Query psy14176
Match_columns 262
No_of_seqs 158 out of 1129
Neff 7.0
Searched_HMMs 29240
Date Fri Aug 16 21:22:04 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14176.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14176hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zvd_A SMAD ubiquitination reg 100.0 5.3E-55 1.8E-59 408.8 17.6 232 6-262 65-322 (380)
2 1nd7_A WW domain-containing pr 100.0 8.7E-55 3E-59 406.7 18.8 234 4-261 62-321 (374)
3 2oni_A E3 ubiquitin-protein li 100.0 1.3E-54 4.6E-59 407.4 17.5 231 6-261 84-341 (392)
4 3h1d_A E3 ubiquitin-protein li 100.0 9.5E-55 3.2E-59 409.3 16.1 235 4-262 86-346 (405)
5 3olm_A E3 ubiquitin-protein li 100.0 1.6E-53 5.4E-58 404.1 19.1 232 6-262 115-372 (429)
6 1c4z_A E6AP, ubiquitin-protein 100.0 6.5E-53 2.2E-57 391.9 16.4 235 4-262 47-307 (358)
7 3pt3_A E3 ubiquitin-protein li 99.8 4.8E-20 1.6E-24 145.3 3.6 61 188-261 2-68 (118)
8 1l6x_B Minimized B-domain of p 50.7 14 0.00048 21.9 2.7 23 223-245 4-28 (34)
9 3ivp_A Putative transposon-rel 36.4 45 0.0015 24.5 4.5 71 175-248 37-107 (126)
10 1zda_A Mini protein A domain, 31.3 16 0.00056 22.1 0.9 22 224-245 10-33 (38)
11 2lr2_A Immunoglobulin G-bindin 28.5 34 0.0012 24.1 2.3 27 222-248 20-48 (88)
12 2kzi_A Engineered protein, ZHE 28.3 23 0.00079 24.4 1.4 20 226-245 23-44 (70)
13 3lfp_A CSP231I C protein; tran 25.4 67 0.0023 22.4 3.6 65 175-249 26-94 (98)
14 1b0n_A Protein (SINR protein); 23.6 81 0.0028 22.1 3.9 70 175-247 26-102 (111)
No 1
>1zvd_A SMAD ubiquitination regulatory factor 2; ubiquitin ligasecatalytic mechanism,X-RAY ligase; 2.10A {Homo sapiens}
Probab=100.00 E-value=5.3e-55 Score=408.81 Aligned_cols=232 Identities=44% Similarity=0.692 Sum_probs=207.7
Q ss_pred CCCCCcchHHHHHHHhhhccc---ceecCCCCC----C-----hHHHHHHHHHHHHHhhccccccccccCeeecCCCCHH
Q psy14176 6 GASMVRDEKQIDLAEQLESVA---FVLCGEDHI----S-----LDKFCQIFQAKGMILGLSDQMILALSDDLSVHGFKNK 73 (262)
Q Consensus 6 ~~~~~~~e~~~~~~~~~~~~~---~~~~~~~~~----~-----~~~~~~~f~~~G~llg~al~~~~~~~~~~l~l~f~~~ 73 (262)
+++=+..|+=..++.++.++. |..++++.. + .++++++|+|+|+++|+|| +++.+++++||++
T Consensus 65 D~GG~~rEff~ll~~el~~p~~gLF~~~~~~~~~~~~np~s~~~~~~l~~f~flG~l~g~al-----~~~~~ld~~f~~~ 139 (380)
T 1zvd_A 65 DYGGVAREWLYLLSHEMLNPYYGLFQYSRDDIYTLQINPDSAVNPEHLSYFHFVGRIMGMAV-----FHGHYIDGGFTLP 139 (380)
T ss_dssp CHHHHHHHHHHHHHHHHTSGGGSSEEEETTEEEEEEECTTGGGSTTHHHHHHHHHHHHHHHH-----HTTCCCCCCCCHH
T ss_pred CCCccHHHHHHHHHHHHcCCcCCCeeccCCCCeeeccCchhhcChHHHHHHHHhHHHHHHHH-----hCCceeCCcCCHH
Confidence 343356677678899988764 444433311 1 2568899999999999999 9999999999999
Q ss_pred HHHHhhCCCCChhhhhhccCccchhhHhhHHHHHHhcCccchheeeeEeEeeeeCC-----------e--eeeech-HHH
Q psy14176 74 MWKFSLGQHCHQNKSKSTCYDTYNHGHRLYVNWRFMRGIEQQFLALQKGFTHWILG-----------L--LRYWEN-PTM 139 (262)
Q Consensus 74 f~k~Llg~~~tl~Dl~~~~~D~~~~l~~s~l~~l~~~~~~~~~l~l~F~v~~~~~g-----------~--~vt~eN-~eY 139 (262)
|||+|+|.+++++||+++ | |++|++ |++|+++++++. ++++|+++.+.+| . .||.+| .+|
T Consensus 140 f~k~llg~~~~l~Dl~~~--D--p~l~~s-L~~ll~~d~~~~-l~ltF~~~~~~~g~~~~veL~p~G~~i~VT~~N~~eY 213 (380)
T 1zvd_A 140 FYKQLLGKSITLDDMELV--D--PDLHNS-LVWILENDITGV-LDHTFCVEHNAYGEIIQHELKPNGKSIPVNEENKKEY 213 (380)
T ss_dssp HHHHHTTCCCCSTTHHHH--C--HHHHHH-HHHHHHSCCTTT-SCCCSEEEEEETTEEEEEESSTTCCCCCCTTTTHHHH
T ss_pred HHHHHhCCCCCHHHHHHh--C--HHHHHH-HHHHHhCCcccc-ccceeEEeeecCCcEeEEecCCCCCCCccccccHHHH
Confidence 999999999999999999 9 999999 999999999876 8999998765444 2 266679 999
Q ss_pred HHHHHHHHHHHhHHHHHHHHHhccccccccccCCCCCHHHHHHHHcCCCCCchhhhccceeecccccchhhhhhccCCCC
Q psy14176 140 LQLYVNWRFMRGIEQQFLALQKGFTEIVPLHLLRPFDERELELVIGGLTSIDIHDWKQHTRLKQFSNIWHLFFLLSQHCT 219 (262)
Q Consensus 140 v~~~~~~~l~~~i~~q~~afr~Gf~~vip~~~L~~fs~~EL~~licG~~~id~~dlk~~t~y~~~~~~~~~~~~~~~g~~ 219 (262)
|+++++|+++++++.|++||++||++|+|.++|++|+|+||+.++||.++||+++|+++|.|. ||+
T Consensus 214 v~l~~~~~l~~~i~~q~~af~~Gf~~vip~~~L~~F~~~ELe~li~G~~~id~~dl~~~t~y~--------------gy~ 279 (380)
T 1zvd_A 214 VRLYVNWRFLRGIEAQFLALQKGFNEVIPQHLLKTFDEKELELIICGLGKIDVNDWKVNTRLK--------------HCT 279 (380)
T ss_dssp HHHHHHHHHTTTTHHHHHHHHHHHHHHSCGGGGTTCCHHHHHHHHHCBSSCCHHHHHHTEEEE--------------SSC
T ss_pred HHHHHHHHHHHhHHHHHHHHHHhHHHHhHHHHHhCCCHHHHHHhhCCCCCCChhhhhhccEec--------------CCC
Confidence 999999999999999999999999999999999999999999999999999999999999999 899
Q ss_pred CCCHHHHHHHHHHHhCCHHHHHhhcccccCCCCCCcccccccC
Q psy14176 220 SDTPVVKWFWQIVESYSEEMRARLLQFVTGSSRVPLQGFKALQ 262 (262)
Q Consensus 220 ~~~~~i~~Fw~vl~~~s~eer~~fL~FvTGs~rlP~gGf~~L~ 262 (262)
+++++|+|||++|++||++||++||+|||||+|+|++||++|+
T Consensus 280 ~~~~~i~~FW~vv~~~s~eer~~fL~FvTGs~rlP~~Gf~~L~ 322 (380)
T 1zvd_A 280 PDSNIVKWFWKAVEFFDEERRARLLQFVTGSSRVPLQGFKALQ 322 (380)
T ss_dssp TTSHHHHHHHHHHHHSCHHHHHHHHHHHHSCSSBCTTCGGGCE
T ss_pred CCcchhhhHHHHHHhCCHHHHHHHHHHHhCCCCCCCcchhhcc
Confidence 9999999999999999999999999999999999999999873
No 2
>1nd7_A WW domain-containing protein 1; HECT, ubiquitin, ligase, WWP1; 2.10A {Homo sapiens} SCOP: d.148.1.1 PDB: 3tug_A
Probab=100.00 E-value=8.7e-55 Score=406.68 Aligned_cols=234 Identities=30% Similarity=0.487 Sum_probs=210.1
Q ss_pred ccCCCCCcchHHHHHHHhhhccc---ceecCCCCCC---------hHHHHHHHHHHHHHhhccccccccccCeeecCCCC
Q psy14176 4 ATGASMVRDEKQIDLAEQLESVA---FVLCGEDHIS---------LDKFCQIFQAKGMILGLSDQMILALSDDLSVHGFK 71 (262)
Q Consensus 4 ~~~~~~~~~e~~~~~~~~~~~~~---~~~~~~~~~~---------~~~~~~~f~~~G~llg~al~~~~~~~~~~l~l~f~ 71 (262)
+++++=+..|+=..++.++.++. |..++++... .++++++|+|+|+++|+|| +++.+++++||
T Consensus 62 G~D~GG~~rEff~ll~~el~~p~~~lF~~~~~~~~~~~~~p~s~~~~~~l~~f~flG~lig~al-----~~~~~ld~~f~ 136 (374)
T 1nd7_A 62 GLDYGGLAREWFFLLSHEVLNPMYCLFEYAGKNNYCLQINPASTINPDHLSYFCFIGRFIAMAL-----FHGKFIDTGFS 136 (374)
T ss_dssp CCCCTHHHHHHHHHHHHHHTCGGGSSEEESSSSSCCEEECGGGGGSTTHHHHHHHHHHHHHHHH-----HTTCCCCCCCC
T ss_pred CcCCCccHHHHHHHHHHHHcCCccccccccCCCCceeccCCcccCCHHHHHHHHHHHHHHHHHH-----hcCCeeCCcCC
Confidence 34555466777679999998874 5555544321 2568899999999999999 99999999999
Q ss_pred HHHHHHhhCCCCChhhhhhccCccchhhHhhHHHHHHhcCccchheeeeEeEeeee-----------CCe--eeeech-H
Q psy14176 72 NKMWKFSLGQHCHQNKSKSTCYDTYNHGHRLYVNWRFMRGIEQQFLALQKGFTHWI-----------LGL--LRYWEN-P 137 (262)
Q Consensus 72 ~~f~k~Llg~~~tl~Dl~~~~~D~~~~l~~s~l~~l~~~~~~~~~l~l~F~v~~~~-----------~g~--~vt~eN-~ 137 (262)
++|||+|+|.+++++||+++ | |++|++ |++|+++++++..++++|+++.+. +|. .||.+| .
T Consensus 137 ~~f~k~llg~~~~l~Dl~~~--D--p~l~~s-L~~l~~~~~~~~~l~l~F~~~~~~~G~~~~veL~p~G~~i~VT~~N~~ 211 (374)
T 1nd7_A 137 LPFYKRMLSKKLTIKDLESI--D--TEFYNS-LIWIRDNNIEECGLEMYFSVDMEILGKVTSHDLKLGGSNILVTEENKD 211 (374)
T ss_dssp HHHHHHHTTCCCCHHHHHTT--C--HHHHHH-HHHHHSSCSCSSCCCCBSEECCCSSTTCCCEESSTTGGGCBCCTTTHH
T ss_pred HHHHHHHhCCCCCHHHHHHh--h--HHHHHh-hhhhccCChhhhhcceeEEEeeccCCceeeEecCCCCcCceeccccHH
Confidence 99999999999999999999 9 999999 999999988874478899876543 343 367789 9
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHhccccccccccCCCCCHHHHHHHHcCCCCCchhhhccceeecccccchhhhhhccCC
Q psy14176 138 TMLQLYVNWRFMRGIEQQFLALQKGFTEIVPLHLLRPFDERELELVIGGLTSIDIHDWKQHTRLKQFSNIWHLFFLLSQH 217 (262)
Q Consensus 138 eYv~~~~~~~l~~~i~~q~~afr~Gf~~vip~~~L~~fs~~EL~~licG~~~id~~dlk~~t~y~~~~~~~~~~~~~~~g 217 (262)
+||+++++|+++++++.|++||++||++|+|.++|++|+|+||+.++||.++||+++|+++|.|. |
T Consensus 212 eYv~l~~~~~l~~~i~~q~~af~~Gf~~vip~~~L~~F~~~ELe~li~G~~~id~~dl~~~t~y~--------------g 277 (374)
T 1nd7_A 212 EYIGLMTEWRFSRGVQEQTKAFLDGFNEVVPLQWLQYFDEKELEVMLCGMQEVDLADWQRNTVYR--------------H 277 (374)
T ss_dssp HHHHHHHHHHHHTTTHHHHHHHHHHHHHHSCGGGGTTCCHHHHHHHHHCCCCCCHHHHHHTEEEE--------------S
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHhhhhhCCHHHHhcCCHHHHHHHhcCCCCCCHHHHhhheEEc--------------C
Confidence 99999999999999999999999999999999999999999999999999999999999999999 8
Q ss_pred CCCCCHHHHHHHHHHHhCCHHHHHhhcccccCCCCCCccccccc
Q psy14176 218 CTSDTPVVKWFWQIVESYSEEMRARLLQFVTGSSRVPLQGFKAL 261 (262)
Q Consensus 218 ~~~~~~~i~~Fw~vl~~~s~eer~~fL~FvTGs~rlP~gGf~~L 261 (262)
|++++++|+|||++|++||++||++||+|||||+|+|++||++|
T Consensus 278 y~~~~~~i~~FW~vv~~~~~eer~~fL~FvTGs~rlP~~Gf~~L 321 (374)
T 1nd7_A 278 YTRNSKQIIWFWQFVKETDNEVRMRLLQFVTGTCRLPLGGFAEL 321 (374)
T ss_dssp CCTTSHHHHHHHHHHHHSCHHHHHHHHHHHHSCSCCCTTCGGGC
T ss_pred CCCCCcceeeHHHHHHhcCHHHHHHHHHHHhCCCCCCCcchhhc
Confidence 99999999999999999999999999999999999999999987
No 3
>2oni_A E3 ubiquitin-protein ligase NEDD4-like protein; alpha and beta protein (A + B), E3 ligase, HECT domain, UBL- conjugation pathway; HET: MSE; 2.20A {Homo sapiens} PDB: 3jvz_C 3jw0_C 2xbf_A 2xbb_A
Probab=100.00 E-value=1.3e-54 Score=407.42 Aligned_cols=231 Identities=32% Similarity=0.543 Sum_probs=208.0
Q ss_pred CCCCCcchHHHHHHHhhhccc---ceecCCCCCC----------hHHHHHHHHHHHHHhhccccccccccCeeecCCCCH
Q psy14176 6 GASMVRDEKQIDLAEQLESVA---FVLCGEDHIS----------LDKFCQIFQAKGMILGLSDQMILALSDDLSVHGFKN 72 (262)
Q Consensus 6 ~~~~~~~e~~~~~~~~~~~~~---~~~~~~~~~~----------~~~~~~~f~~~G~llg~al~~~~~~~~~~l~l~f~~ 72 (262)
+++=+..|+=..++.++.++. |..++.+... .++++++|+|+|+++|+|| +++.+++++|++
T Consensus 84 D~GG~~rEff~ll~~el~~p~~gLF~~~~~~~~~~~~np~s~~~~~~~l~~f~flG~lig~Al-----~~~~~ld~~f~~ 158 (392)
T 2oni_A 84 DYGGVAREWFFLLSKEMFNPYYGLFEYSATDNYTLQINPNSGLCNEDHLSYFTFIGRVAGLAV-----FHGKLLDGFFIR 158 (392)
T ss_dssp CHHHHHHHHHHHHHHHHTCGGGSSEEESSTTCCCEEECTTHHHHCTTHHHHHHHHHHHHHHHH-----HHTCCCSSCBCH
T ss_pred cCCccHHHHHHHHHHHHcCcccCCceecCCCCceeccCCccccccHHHHHHHHhcchhhhhhh-----cCCcccCccchH
Confidence 333356777678999998864 4444443321 1567899999999999999 999999999999
Q ss_pred HHHHHhhCCCCChhhhhhccCccchhhHhhHHHHHHhcCccchheeeeEeEeeeeCCe-------------eeeech-HH
Q psy14176 73 KMWKFSLGQHCHQNKSKSTCYDTYNHGHRLYVNWRFMRGIEQQFLALQKGFTHWILGL-------------LRYWEN-PT 138 (262)
Q Consensus 73 ~f~k~Llg~~~tl~Dl~~~~~D~~~~l~~s~l~~l~~~~~~~~~l~l~F~v~~~~~g~-------------~vt~eN-~e 138 (262)
+|||+|+|.+++++||+++ | |++|++ |++|+++++++ ++++|+++.+..|. .||.+| .+
T Consensus 159 ~f~K~llg~~~~l~Dl~~~--D--p~l~~s-L~~l~~~d~~~--l~L~F~v~~~~~G~~~~veL~p~G~~i~VT~~N~~e 231 (392)
T 2oni_A 159 PFYKMMLGKQITLNDMESV--D--SEYYNS-LKWILENDPTE--LDLMFCIDEENFGQTYQVDLKPNGSEIMVTNENKRE 231 (392)
T ss_dssp HHHHHHTTCCCCTHHHHTT--C--HHHHHH-HHHHHHSCCGG--GCCBSEEEEEETTEEEEEESSTTGGGCBCCTTTHHH
T ss_pred HHHHHHhCCCCCHHHHHHh--C--HHHHHH-HHHHhcCChhH--ceeeEEEeeecCCceeEEecCCCCccCccchhhHHH
Confidence 9999999999999999999 9 999999 99999999988 89999987654443 367779 99
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHhccccccccccCCCCCHHHHHHHHcCCCCCchhhhccceeecccccchhhhhhccCCC
Q psy14176 139 MLQLYVNWRFMRGIEQQFLALQKGFTEIVPLHLLRPFDERELELVIGGLTSIDIHDWKQHTRLKQFSNIWHLFFLLSQHC 218 (262)
Q Consensus 139 Yv~~~~~~~l~~~i~~q~~afr~Gf~~vip~~~L~~fs~~EL~~licG~~~id~~dlk~~t~y~~~~~~~~~~~~~~~g~ 218 (262)
||+++++|+++++++.|++||++||++|+|.++|++|+|+||+.++||.++||+++|+++|+|+ +||
T Consensus 232 Yv~l~~~~~l~~~i~~q~~af~~Gf~~vip~~~L~~F~~~ELe~licG~~~id~~dl~~~t~y~-------------~gy 298 (392)
T 2oni_A 232 YIDLVIQWRFVNRVQKQMNAFLEGFTELLPIDLIKIFDENELELLMCGLGDVDVNDWRQHSIYK-------------NGY 298 (392)
T ss_dssp HHHHHHHHHHTTTSHHHHHHHHHHHHHHSCHHHHTTSCHHHHHHHHHCCCCCCHHHHHHTCEEE-------------TTC
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHhccHHhhhcCCHHHHHHhhcCCCCCCHHHHhcceEEC-------------CCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999 489
Q ss_pred CCCCHHHHHHHHHHHhCCHHHHHhhcccccCCCCCCccccccc
Q psy14176 219 TSDTPVVKWFWQIVESYSEEMRARLLQFVTGSSRVPLQGFKAL 261 (262)
Q Consensus 219 ~~~~~~i~~Fw~vl~~~s~eer~~fL~FvTGs~rlP~gGf~~L 261 (262)
++++++|+|||++|++||+|||++||+|||||+|+|++||++|
T Consensus 299 ~~~~~~i~~FW~vv~~~s~eer~~fL~FvTGs~rlP~~Gf~~L 341 (392)
T 2oni_A 299 CPNHPVIQWFWKAVLLMDAEKRIRLLQFVTGTSRVPMNGFAEL 341 (392)
T ss_dssp CTTCHHHHHHHHHHHHSCHHHHHHHHHHHHSCSCCCTTCGGGC
T ss_pred CCCCchheeHHHHHHhCCHHHHHHHHHHHhCCCCCCCcchhhh
Confidence 9999999999999999999999999999999999999999987
No 4
>3h1d_A E3 ubiquitin-protein ligase HUWE1; E3ligase, HECT, LOBE, alternative splicing, chromosomal rearrangement, cytoplasm, differentiation; 1.89A {Homo sapiens} PDB: 3g1n_A
Probab=100.00 E-value=9.5e-55 Score=409.33 Aligned_cols=235 Identities=29% Similarity=0.423 Sum_probs=210.0
Q ss_pred ccCCCCCcchHHHHHHHhhhcc---cceecCCCCCC---------hHHHHHHHHHHHHHhhccccccccccCeeecCCCC
Q psy14176 4 ATGASMVRDEKQIDLAEQLESV---AFVLCGEDHIS---------LDKFCQIFQAKGMILGLSDQMILALSDDLSVHGFK 71 (262)
Q Consensus 4 ~~~~~~~~~e~~~~~~~~~~~~---~~~~~~~~~~~---------~~~~~~~f~~~G~llg~al~~~~~~~~~~l~l~f~ 71 (262)
+++++=+..|+=..++.++.++ .|..+++++.. .++++++|+|+|+++|+|| +++.+++++||
T Consensus 86 G~D~GG~~rEff~ll~~elf~p~~gLF~~~~~~~~~~~~np~s~~~~~~l~~f~flGrliG~Al-----~~~~~ld~~F~ 160 (405)
T 3h1d_A 86 GQDAGGLLREWYMIISREMFNPMYALFRTSPGDRVTYTINPSSHANPNHLSYFKFVGRIVAKAV-----YDNRLLECYFT 160 (405)
T ss_dssp SCCCTTHHHHHHHHHHHHTTCGGGTSEEECSSCSSEEEECCC-----CHHHHHHHHHHHHHHHH-----HHTCCCCCEEC
T ss_pred CcCCChhHHHHHHHHHHHHhCCcccceeeccCCceeEeeCCccccChhHHHHHHHHhHHHHHHH-----hCCCccCCCcc
Confidence 3455557778867999999986 44555544321 3678899999999999999 99999999999
Q ss_pred HHHHHHhhCCCCChhhhhhccCccchhhHhhHHHHHHhcCccchheeeeEeEee-----------eeCCe--eeeech-H
Q psy14176 72 NKMWKFSLGQHCHQNKSKSTCYDTYNHGHRLYVNWRFMRGIEQQFLALQKGFTH-----------WILGL--LRYWEN-P 137 (262)
Q Consensus 72 ~~f~k~Llg~~~tl~Dl~~~~~D~~~~l~~s~l~~l~~~~~~~~~l~l~F~v~~-----------~~~g~--~vt~eN-~ 137 (262)
++|||+|+|.+++++||+++ | |++|++ |++|+++++++..++++|+++. .++|. .||.+| .
T Consensus 161 ~~f~K~Llg~~~~l~DL~~~--D--p~l~~s-L~~ll~~~~~~l~l~ltF~~~~~~~G~~~~veL~p~G~~i~VT~~Nk~ 235 (405)
T 3h1d_A 161 RSFYKHILGKSVRYTDMESE--D--YHFYQG-LVYLLENDVSTLGYDLTFSTEVQEFGVAEVRDLKPNGANILVTEENKK 235 (405)
T ss_dssp HHHHHHHHTCCCCGGGHHHH--C--HHHHHH-HHHHHHSCGGGSSSCEEEETTTCCEEECCGGGGSSCSSEEECCTTTHH
T ss_pred HHHHHHhcCCCCCHHHHHHh--h--HHHHHH-HhhhhcCChhhhcceeEEEEEeecCCceeeEeecCCCCCCccchHhHH
Confidence 99999999999999999999 9 999999 9999999988854678888642 35564 367789 9
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHhccccccccccCCCCCHHHHHHHHcCCCCCchhhhccceeecccccchhhhhhccCC
Q psy14176 138 TMLQLYVNWRFMRGIEQQFLALQKGFTEIVPLHLLRPFDERELELVIGGLTSIDIHDWKQHTRLKQFSNIWHLFFLLSQH 217 (262)
Q Consensus 138 eYv~~~~~~~l~~~i~~q~~afr~Gf~~vip~~~L~~fs~~EL~~licG~~~id~~dlk~~t~y~~~~~~~~~~~~~~~g 217 (262)
+||+++++|+++++++.|++||++||++|+|.++|++|+|+||+.++||.++||+++|+++|.|. |
T Consensus 236 eYV~l~~~~~l~~~v~~q~~aF~~Gf~~Vip~~~L~lF~~~ELe~Li~G~~~id~~dl~~~t~y~--------------g 301 (405)
T 3h1d_A 236 EYVHLVCQMRMTGAIRKQLAAFLEGFYEIIPKRLISIFTEQELELLISGLPTIDIDDLKSNTEYH--------------K 301 (405)
T ss_dssp HHHHHHHHHHHTGGGHHHHHHHHHHHHHHSCHHHHTTSCHHHHHHHHHCCCCCCHHHHHHTEEEE--------------S
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhCCCHHHHHHHhCCCCCCCHHHHHhhCccc--------------C
Confidence 99999999999999999999999999999999999999999999999999999999999999998 9
Q ss_pred CCCCCHHHHHHHHHHHhCCHHHHHhhcccccCCCCCCcccccccC
Q psy14176 218 CTSDTPVVKWFWQIVESYSEEMRARLLQFVTGSSRVPLQGFKALQ 262 (262)
Q Consensus 218 ~~~~~~~i~~Fw~vl~~~s~eer~~fL~FvTGs~rlP~gGf~~L~ 262 (262)
|++++++|+|||+++++||++||++||+|||||+|+|++||++|+
T Consensus 302 y~~~~~~i~~FW~v~~~~s~eer~~fL~FvTGs~rlP~~Gf~~L~ 346 (405)
T 3h1d_A 302 YQSNSIQIQWFWRALRSFDQADRAKFLQFVTGTSKVPLQGFAALE 346 (405)
T ss_dssp SCTTCHHHHHHHHHHHHSCHHHHHHHHHHHHSSSCCCTTCGGGCB
T ss_pred CCCCCchHhhHHHHHHhCCHHHHHHHHHHHcCCCCCCCCcccccc
Confidence 999999999999999999999999999999999999999999873
No 5
>3olm_A E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-53 Score=404.12 Aligned_cols=232 Identities=32% Similarity=0.540 Sum_probs=207.0
Q ss_pred CCCCCcchHHHHHHHhhhccc---ceecCCCCC----C-----hHHHHHHHHHHHHHhhccccccccccCeeecCCCCHH
Q psy14176 6 GASMVRDEKQIDLAEQLESVA---FVLCGEDHI----S-----LDKFCQIFQAKGMILGLSDQMILALSDDLSVHGFKNK 73 (262)
Q Consensus 6 ~~~~~~~e~~~~~~~~~~~~~---~~~~~~~~~----~-----~~~~~~~f~~~G~llg~al~~~~~~~~~~l~l~f~~~ 73 (262)
+++=+..|+=..++.+++++. |..++++.. + .++++++|+|+|++||+|| +++.+++++||++
T Consensus 115 D~GG~~rEff~ll~~elf~p~~gLF~~~~~~~~~~~~np~s~~~~~~l~~f~flG~lig~Al-----~~~~~ld~~f~~~ 189 (429)
T 3olm_A 115 DYGGVSREFFFLLSHEMFNPFYCLFEYSAYDNYTIQINPNSGINPEHLNYFKFIGRVVGLGV-----FHRRFLDAFFVGA 189 (429)
T ss_dssp ------CHHHHHHHHHHTCGGGSSEEESSSSSCCEEECGGGGGSTTHHHHHHHHHHHHHHHH-----HTTCCCCCCBCHH
T ss_pred CCChhHHHHHHHHHHHHcCccCCCceeeCCCCeeEeeCCcccCCHHHHHHHHHHHHHHHHHH-----hcCCccCCCcCHH
Confidence 344466777679999999874 444444432 1 2478899999999999999 9999999999999
Q ss_pred HHHHhhCCCCChhhhhhccCccchhhHhhHHHHHHhcCccchheeeeEeEeeeeCCe-------------eeeech-HHH
Q psy14176 74 MWKFSLGQHCHQNKSKSTCYDTYNHGHRLYVNWRFMRGIEQQFLALQKGFTHWILGL-------------LRYWEN-PTM 139 (262)
Q Consensus 74 f~k~Llg~~~tl~Dl~~~~~D~~~~l~~s~l~~l~~~~~~~~~l~l~F~v~~~~~g~-------------~vt~eN-~eY 139 (262)
|||+|+|.+++++||+++ | |++|++ |++|+++++++. ++++|+++.+.+|. .||.+| ++|
T Consensus 190 f~k~Llg~~~~l~Dl~~~--D--p~l~~s-L~~ll~~d~~~~-l~l~F~~~~~~~g~~~~veL~p~G~~i~VT~~Nk~eY 263 (429)
T 3olm_A 190 LYKMMLRKKVVLQDMEGV--D--AEVYNS-LNWMLENSIDGV-LDLTFSADDERFGEVVTVDLKPDGRNIEVTDGNKKEY 263 (429)
T ss_dssp HHHHHTTCCCCHHHHHHH--C--HHHHHH-HHHHTTSCCTTT-CCCBSEEEEEETTEEEEEESSTTGGGSBCCTTTHHHH
T ss_pred HHHhhcCCCCCHHHHHHH--h--HHHHHH-HHHHHhCCHHHh-hcCceEEEeccCCceeeEeccCCCcccccCchhHHHH
Confidence 999999999999999999 9 999999 999999999876 89999987665543 356679 999
Q ss_pred HHHHHHHHHHHhHHHHHHHHHhccccccccccCCCCCHHHHHHHHcCCCCCchhhhccceeecccccchhhhhhccCCCC
Q psy14176 140 LQLYVNWRFMRGIEQQFLALQKGFTEIVPLHLLRPFDERELELVIGGLTSIDIHDWKQHTRLKQFSNIWHLFFLLSQHCT 219 (262)
Q Consensus 140 v~~~~~~~l~~~i~~q~~afr~Gf~~vip~~~L~~fs~~EL~~licG~~~id~~dlk~~t~y~~~~~~~~~~~~~~~g~~ 219 (262)
|+++++|+++++++.|++||++||++|+|.++|++|+|+||+.++||.++||+++|+++|.|. ||+
T Consensus 264 V~l~~~~~l~~~v~~q~~aF~~Gf~~vip~~~L~~F~~~ELe~Li~G~~~id~~dl~~~t~y~--------------Gy~ 329 (429)
T 3olm_A 264 VELYTQWRIVDRVQEQFKAFMDGFNELIPEDLVTVFDERELELLIGGIAEIDIEDWKKHTDYR--------------GYQ 329 (429)
T ss_dssp HHHHHHHHHTTTTHHHHHHHHHHHHTTSCHHHHTTSCHHHHHHHHTCBCCCCHHHHHHTEEEE--------------SCC
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHhhhcCCHHHHhcCCHHHHHHHhcCCCCCCHHHHHHhcccc--------------CCC
Confidence 999999999999999999999999999999999999999999999999999999999999998 899
Q ss_pred CCCHHHHHHHHHHHhCCHHHHHhhcccccCCCCCCcccccccC
Q psy14176 220 SDTPVVKWFWQIVESYSEEMRARLLQFVTGSSRVPLQGFKALQ 262 (262)
Q Consensus 220 ~~~~~i~~Fw~vl~~~s~eer~~fL~FvTGs~rlP~gGf~~L~ 262 (262)
+++++|+|||++|++||++||++||+|||||+|+|++||++|+
T Consensus 330 ~~~~~I~~FW~vv~~~s~eer~~fL~FvTGs~rlP~~Gf~~L~ 372 (429)
T 3olm_A 330 ESDEVIQWFWKCVSEWDNEQRARLLQFTTGTSRIPVNGFKDLQ 372 (429)
T ss_dssp TTSHHHHHHHHHHHHSCHHHHHHHHHHHHSCSCBCTTCGGGCE
T ss_pred CCchHHHHHHHHHHhCCHHHHHHHHhHhcCCCCCCCccccccc
Confidence 9999999999999999999999999999999999999999884
No 6
>1c4z_A E6AP, ubiquitin-protein ligase E3A; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.148.1.1 PDB: 1d5f_A
Probab=100.00 E-value=6.5e-53 Score=391.90 Aligned_cols=235 Identities=21% Similarity=0.305 Sum_probs=204.1
Q ss_pred ccCCCCCcchHHHHHHHhhhccc---ceecCCCCCC---h--HHHHHHHHHHHHHhhccccccccccCeeecCCCCHHHH
Q psy14176 4 ATGASMVRDEKQIDLAEQLESVA---FVLCGEDHIS---L--DKFCQIFQAKGMILGLSDQMILALSDDLSVHGFKNKMW 75 (262)
Q Consensus 4 ~~~~~~~~~e~~~~~~~~~~~~~---~~~~~~~~~~---~--~~~~~~f~~~G~llg~al~~~~~~~~~~l~l~f~~~f~ 75 (262)
+++++=+..|+=..++.++.++. |..++++... . ....++|+++|+++|+|| +++.+++++||++||
T Consensus 47 G~D~GG~~rEff~ll~~el~~p~~glF~~~~~~~~~~~np~s~~~~~~f~flG~lig~Al-----~~~~~ld~~f~~~f~ 121 (358)
T 1c4z_A 47 GVDEGGVSKEFFQLVVEEIFNPDIGMFTYDESTKLFWFNPSSFETEGQFTLIGIVLGLAI-----YNNCILDVHFPMVVY 121 (358)
T ss_dssp CCCSSHHHHHHHHHHHHHHTSGGGCSEEEETTTTEEEECTTCCSCHHHHHHHHHHHHHHH-----HTTCCCCCCCCHHHH
T ss_pred CcCCCccHHHHHHHHHHHHcCCcCCceeecCCCCeEeeCCccccchHHHHhHHHHHHHHH-----HCCCCcCCcCCHHHH
Confidence 34455467788678999998765 4444332110 0 112479999999999999 999999999999999
Q ss_pred HHhhCCCCChhhhhhccCccchhhHhhHHHHHHhc--CccchheeeeEeEee-e-----------eCCe--eeeech-HH
Q psy14176 76 KFSLGQHCHQNKSKSTCYDTYNHGHRLYVNWRFMR--GIEQQFLALQKGFTH-W-----------ILGL--LRYWEN-PT 138 (262)
Q Consensus 76 k~Llg~~~tl~Dl~~~~~D~~~~l~~s~l~~l~~~--~~~~~~l~l~F~v~~-~-----------~~g~--~vt~eN-~e 138 (262)
|+|+|.+++++||+++ | |++|++ |++|++. ++++. ++++|+++. + ++|. .||.+| .+
T Consensus 122 k~llg~~~~l~Dl~~~--D--p~l~~s-L~~l~~~~~d~~~~-l~ltF~~~~~~~~G~~~~~eL~p~G~~i~VT~~N~~e 195 (358)
T 1c4z_A 122 RKLMGKKGTFRDLGDS--H--PVLYQS-LKDLLEYEGNVEDD-MMITFQISQTDLFGNPMMYDLKENGDKIPITNENRKE 195 (358)
T ss_dssp HHHTTCCCCHHHHHHH--S--HHHHHH-HHHHHHCCSCHHHH-TCCBSEEEECCTTTCCEEEESSTTTTTSBCCTTTHHH
T ss_pred HHHhCCCCCHHHHHHh--C--HHHHHH-HHHHHhcCCchhhh-ccceEEEeccccCCCeeeeecCCCCcccccccccHHH
Confidence 9999999999999999 9 999999 9999975 45554 889998863 2 3343 367789 99
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHhccccccccccCC-CCCHHHHHHHHcCCCCCchhhhccceeecccccchhhhhhccCC
Q psy14176 139 MLQLYVNWRFMRGIEQQFLALQKGFTEIVPLHLLR-PFDERELELVIGGLTSIDIHDWKQHTRLKQFSNIWHLFFLLSQH 217 (262)
Q Consensus 139 Yv~~~~~~~l~~~i~~q~~afr~Gf~~vip~~~L~-~fs~~EL~~licG~~~id~~dlk~~t~y~~~~~~~~~~~~~~~g 217 (262)
||+++++|+++++++.|++||++||++|+|...|. +|+|+||+.++||.++||+++|+++|+|+ +|
T Consensus 196 Yv~l~~~~~l~~~i~~q~~af~~Gf~~vip~~~L~~lF~~~ELe~li~G~~~id~~~l~~~t~y~-------------~g 262 (358)
T 1c4z_A 196 FVNLYSDYILNKSVEKQFKAFRRGFHMVTNESPLKYLFRPEEIELLICGSRNLDFQALEETTEYD-------------GG 262 (358)
T ss_dssp HHHHHHHHHHTSTTHHHHHHHHHHHHHHHSSSCSCSCSSTHHHHHHHHCBCCCCCTTTSTTCEEE-------------SS
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHhcCcchhhcCCCHHHHHHHhhcccCCCHHHHHHHceeC-------------CC
Confidence 99999999999999999999999999999999886 89999999999999999999999999999 59
Q ss_pred CCCCCHHHHHHHHHHHhCCHHHHHhhcccccCCCCCCcccccccC
Q psy14176 218 CTSDTPVVKWFWQIVESYSEEMRARLLQFVTGSSRVPLQGFKALQ 262 (262)
Q Consensus 218 ~~~~~~~i~~Fw~vl~~~s~eer~~fL~FvTGs~rlP~gGf~~L~ 262 (262)
|++++++|+|||++|++||++||++||+|||||+|+|++||++|+
T Consensus 263 y~~~~~~i~~FW~vv~~~~~eer~~fL~FvTGs~rlP~~Gf~~l~ 307 (358)
T 1c4z_A 263 YTRDSVLIREFWEIVHSFTDEQKRLFLQFTTGTDRAPVGGLGKLK 307 (358)
T ss_dssp CCSSCHHHHHHHHHHHTSCHHHHHHHHHHHSSSSSBCTTCGGGGC
T ss_pred CCCCcchhhhHHHHHHhCCHHHHHHHHHHHcCCCCCCCCCcccce
Confidence 999999999999999999999999999999999999999999885
No 7
>3pt3_A E3 ubiquitin-protein ligase UBR5; EDD, HHYD, mixed alpha-beta fold, ubiquitin ligase; 1.97A {Homo sapiens}
Probab=99.78 E-value=4.8e-20 Score=145.32 Aligned_cols=61 Identities=26% Similarity=0.507 Sum_probs=38.0
Q ss_pred CCCchhhhccceeecccccchhhhhhccCCCCCCC----HHHHHHHHHHHhCCHHHHHhhcccccCCCCCCc--cccccc
Q psy14176 188 TSIDIHDWKQHTRLKQFSNIWHLFFLLSQHCTSDT----PVVKWFWQIVESYSEEMRARLLQFVTGSSRVPL--QGFKAL 261 (262)
Q Consensus 188 ~~id~~dlk~~t~y~~~~~~~~~~~~~~~g~~~~~----~~i~~Fw~vl~~~s~eer~~fL~FvTGs~rlP~--gGf~~L 261 (262)
|-||+++||+||+|. ++|..++ ++|+|||++|++||++||++||+|+|||+|+|+ +||++|
T Consensus 2 ~~~Dv~dLr~~T~Y~-------------~~~~~~~~~~~~~i~wFW~vv~~~~~eer~~fL~FvTGs~rlP~~~~Gf~~l 68 (118)
T 3pt3_A 2 PLGSVQMLISFTSFN-------------DESGENAEKLLQFKRWFWSIVEKMSMTERQDLVYFWTSSPSLPASEEGFQPM 68 (118)
T ss_dssp ----------CCEEE-------------ECSCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHSCC------------
T ss_pred CccCHHHHHhhcEEc-------------CCcCCCccccchHHHHHHHHHHHCCHHHHHHHHhHhcCCCCCCCcccCcccC
Confidence 468999999999999 3666666 999999999999999999999999999999999 799987
No 8
>1l6x_B Minimized B-domain of protein A Z34C; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: k.13.1.1 PDB: 1oqo_C* 1oqx_C* 1zdc_A 1zdd_A
Probab=50.71 E-value=14 Score=21.86 Aligned_cols=23 Identities=17% Similarity=0.401 Sum_probs=19.2
Q ss_pred HHHHHHHHHHH--hCCHHHHHhhcc
Q psy14176 223 PVVKWFWQIVE--SYSEEMRARLLQ 245 (262)
Q Consensus 223 ~~i~~Fw~vl~--~~s~eer~~fL~ 245 (262)
+.-+.|.+||. .+|++||-.|++
T Consensus 4 ~qQnaFYevLh~~nLtEeQrn~yI~ 28 (34)
T 1l6x_B 4 QCQRRFYEALHDPNLNEEQRNAKIK 28 (34)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHhHHH
Confidence 45578999997 699999998875
No 9
>3ivp_A Putative transposon-related DNA-binding protein; APC62618, clostridium diffic structural genomics, PSI-2, protein structure initiative; HET: PG4; 2.02A {Clostridium difficile}
Probab=36.38 E-value=45 Score=24.49 Aligned_cols=71 Identities=8% Similarity=0.009 Sum_probs=49.8
Q ss_pred CCHHHHHHHHcCCCCCchhhhccceeecccccchhhhhhccCCCCCCCHHHHHHHHHHHhCCHHHHHhhccccc
Q psy14176 175 FDERELELVIGGLTSIDIHDWKQHTRLKQFSNIWHLFFLLSQHCTSDTPVVKWFWQIVESYSEEMRARLLQFVT 248 (262)
Q Consensus 175 fs~~EL~~licG~~~id~~dlk~~t~y~~~~~~~~~~~~~~~g~~~~~~~i~~Fw~vl~~~s~eer~~fL~FvT 248 (262)
+++.-+..+-.|...++++.+.+.+.+-+.+-.|=+ ...+....++....+.+.+..+++++++.++.++.
T Consensus 37 is~~~is~~E~g~~~p~~~~l~~ia~~l~v~~~~l~---~~~~~~~~~~~~~~l~~~~~~l~~~~~~~i~~~i~ 107 (126)
T 3ivp_A 37 IDPRYLTNIENKGQHPSLQVLYDLVSLLNVSVDEFF---LPASSQVKSTKRRQLENKIDNFTDADLVIMESVAD 107 (126)
T ss_dssp CCHHHHHHHHHSCCCCCHHHHHHHHHHHTCCSHHHH---SCCCCCCCCHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHCCCCCCCHHHHHHHHHHHCcCHHHHh---CCCccccchHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 478888888888877888888877766543322211 11123345677788889999999999998887764
No 10
>1zda_A Mini protein A domain, Z38; IGG binding domain, protein A mimic; NMR {Synthetic construct} SCOP: k.13.1.1 PDB: 1zdb_A
Probab=31.34 E-value=16 Score=22.10 Aligned_cols=22 Identities=18% Similarity=0.400 Sum_probs=18.5
Q ss_pred HHHHHHHHHH--hCCHHHHHhhcc
Q psy14176 224 VVKWFWQIVE--SYSEEMRARLLQ 245 (262)
Q Consensus 224 ~i~~Fw~vl~--~~s~eer~~fL~ 245 (262)
.-+.|.+||. .+|+|||-.|++
T Consensus 10 QQnaFYevLh~~nLtEeQrn~yI~ 33 (38)
T 1zda_A 10 QQRRFYEALHDPNLNEEQRNAKIK 33 (38)
T ss_dssp SSHHHHHHHSCSSSCTTHHHHHHH
T ss_pred HHHHHHHHHcCCCCCHHHHHhHHH
Confidence 3468999997 699999998875
No 11
>2lr2_A Immunoglobulin G-binding protein A; Z domain, lanthanide binding TAG, de novo protein; NMR {Artificial gene}
Probab=28.47 E-value=34 Score=24.13 Aligned_cols=27 Identities=22% Similarity=0.386 Sum_probs=22.2
Q ss_pred CHHHHHHHHHHH--hCCHHHHHhhccccc
Q psy14176 222 TPVVKWFWQIVE--SYSEEMRARLLQFVT 248 (262)
Q Consensus 222 ~~~i~~Fw~vl~--~~s~eer~~fL~FvT 248 (262)
...-..||+|+. .+++|||..|++=.-
T Consensus 20 k~qqnAfyEIl~lPNLneeQrnafiqSLk 48 (88)
T 2lr2_A 20 KEQQNAFYEILHLPNLNEEQRNAFIQSLK 48 (88)
T ss_dssp HHHHHHHHHHHTCSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHhc
Confidence 456678999997 799999999987544
No 12
>2kzi_A Engineered protein, ZHER2 affibody; protein binding; NMR {Staphylococcus aureus} PDB: 2kzj_A 2otk_E
Probab=28.25 E-value=23 Score=24.35 Aligned_cols=20 Identities=10% Similarity=0.512 Sum_probs=17.3
Q ss_pred HHHHHHHH--hCCHHHHHhhcc
Q psy14176 226 KWFWQIVE--SYSEEMRARLLQ 245 (262)
Q Consensus 226 ~~Fw~vl~--~~s~eer~~fL~ 245 (262)
..||+||. .+|++||..|++
T Consensus 23 nAFYeiL~~pnLtEeQrngfI~ 44 (70)
T 2kzi_A 23 NAYWEIALLPNLNNQQKRAFIR 44 (70)
T ss_dssp TSSHHHHHCSSSCHHHHHHHHH
T ss_pred HHHHHHHcCCCcchhhhhcccc
Confidence 47999997 699999998875
No 13
>3lfp_A CSP231I C protein; transcriptional regulator, DNA binding protein, helix-turn-H restriction-modification, transcription; 2.00A {Citrobacter SP} PDB: 3lis_A
Probab=25.41 E-value=67 Score=22.35 Aligned_cols=65 Identities=12% Similarity=0.123 Sum_probs=46.1
Q ss_pred CCHHH----HHHHHcCCCCCchhhhccceeecccccchhhhhhccCCCCCCCHHHHHHHHHHHhCCHHHHHhhcccccC
Q psy14176 175 FDERE----LELVIGGLTSIDIHDWKQHTRLKQFSNIWHLFFLLSQHCTSDTPVVKWFWQIVESYSEEMRARLLQFVTG 249 (262)
Q Consensus 175 fs~~E----L~~licG~~~id~~dlk~~t~y~~~~~~~~~~~~~~~g~~~~~~~i~~Fw~vl~~~s~eer~~fL~FvTG 249 (262)
.++.- +..+-.|...++.+.+.+.+.+-+.+-.| .-.......-....+..++++++..+ .|+.+
T Consensus 26 is~~~~~~~is~~E~g~~~p~~~~l~~la~~l~v~~~~---------l~~~~~~~~~~~~~~~~l~~~~~~~~-~~l~~ 94 (98)
T 3lfp_A 26 IDEASASARMNQYEKGKHAPDFEMANRLAKVLKIPVSY---------LYTPEDDLAQIILTWNELNEQERKRI-NFYIR 94 (98)
T ss_dssp CCHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHTSCGGG---------GGCCCHHHHHHHHHHTTCCHHHHHHH-HHHHT
T ss_pred CCcchhhhHHHHHHCCCCCCCHHHHHHHHHHHCcCHHH---------HhCCChhHHHHHHHHHhCCHHHHHHH-HHHHH
Confidence 46777 88888888778888888777665432222 11234445667788899999999998 88765
No 14
>1b0n_A Protein (SINR protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1 a.35.1.3 PDB: 2yal_A
Probab=23.60 E-value=81 Score=22.12 Aligned_cols=70 Identities=14% Similarity=0.053 Sum_probs=41.2
Q ss_pred CCHHHHHHHHcC-CCCCchhhhccceeecccccchhhhhhccCCC-----CCCCHHHHHHHHHH-HhCCHHHHHhhcccc
Q psy14176 175 FDERELELVIGG-LTSIDIHDWKQHTRLKQFSNIWHLFFLLSQHC-----TSDTPVVKWFWQIV-ESYSEEMRARLLQFV 247 (262)
Q Consensus 175 fs~~EL~~licG-~~~id~~dlk~~t~y~~~~~~~~~~~~~~~g~-----~~~~~~i~~Fw~vl-~~~s~eer~~fL~Fv 247 (262)
.++.-+..+..| ...++.+.+.+.+.+-+.+-.|=+. ..+. ...++....+...+ ..+|++++..++.|+
T Consensus 26 is~~~i~~~e~g~~~~p~~~~l~~ia~~l~v~~~~l~~---~~~~~~~~~~~~~~~~~~l~~~~~~~l~~e~~~~i~~~i 102 (111)
T 1b0n_A 26 VAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLD---EKHETEYDGQLDSEWEKLVRDAMTSGVSKKQFREFLDYQ 102 (111)
T ss_dssp CCHHHHHHHHTTCCSCCCHHHHHHHHHHHTCCHHHHHC---CTTCC-----CCHHHHHHHHHHHHSCCCHHHHHHHHHHH
T ss_pred cCHHHHHHHHcCCCCCCCHHHHHHHHHHHCcCHHHHhc---CCCCCCCcccccHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 467777777778 6666666666666554332222110 0000 01234455566777 899999999888775
Done!