RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy14176
         (262 letters)



>d1nd7a_ d.148.1.1 (A:) WW domain-containing protein 1, WWP1 {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 374

 Score =  100 bits (250), Expect = 2e-25
 Identities = 49/123 (39%), Positives = 73/123 (59%), Gaps = 14/123 (11%)

Query: 140 LQLYVNWRFMRGIEQQFLALQKGFTEIVPLHLLRPFDERELELVIGGLTSIDIHDWKQHT 199
           + L   WRF RG+++Q  A   GF E+VPL  L+ FDE+ELE+++ G+  +D+ DW+++T
Sbjct: 214 IGLMTEWRFSRGVQEQTKAFLDGFNEVVPLQWLQYFDEKELEVMLCGMQEVDLADWQRNT 273

Query: 200 RLKQFSNIWHLFFLLSQHCTSDTPVVKWFWQIVESYSEEMRARLLQFVTGSSRVPLQGFK 259
                           +H T ++  + WFWQ V+    E+R RLLQFVTG+ R+PL GF 
Sbjct: 274 VY--------------RHYTRNSKQIIWFWQFVKETDNEVRMRLLQFVTGTCRLPLGGFA 319

Query: 260 ALQ 262
            L 
Sbjct: 320 ELM 322


>d1c4za_ d.148.1.1 (A:) Ubiquitin-protein ligase E3a (E6ap) {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 350

 Score = 91.0 bits (225), Expect = 7e-22
 Identities = 34/124 (27%), Positives = 62/124 (50%), Gaps = 14/124 (11%)

Query: 140 LQLYVNWRFMRGIEQQFLALQKGFTEIVPLHLLRP-FDERELELVIGGLTSIDIHDWKQH 198
           + LY ++   + +E+QF A ++GF  +     L+  F   E+EL+I G  ++D    ++ 
Sbjct: 195 VNLYSDYILNKSVEKQFKAFRRGFHMVTNESPLKYLFRPEEIELLICGSRNLDFQALEET 254

Query: 199 TRLKQFSNIWHLFFLLSQHCTSDTPVVKWFWQIVESYSEEMRARLLQFVTGSSRVPLQGF 258
           T                   T D+ +++ FW+IV S+++E +   LQF TG+ R P+ G 
Sbjct: 255 TEYDG-------------GYTRDSVLIREFWEIVHSFTDEQKRLFLQFTTGTDRAPVGGL 301

Query: 259 KALQ 262
             L+
Sbjct: 302 GKLK 305


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.327    0.139    0.447 

Gapped
Lambda     K      H
   0.267   0.0398    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,041,343
Number of extensions: 48178
Number of successful extensions: 150
Number of sequences better than 10.0: 1
Number of HSP's gapped: 148
Number of HSP's successfully gapped: 6
Length of query: 262
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 178
Effective length of database: 1,254,276
Effective search space: 223261128
Effective search space used: 223261128
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 52 (24.7 bits)