Query psy14180
Match_columns 131
No_of_seqs 140 out of 1079
Neff 7.8
Searched_HMMs 46136
Date Fri Aug 16 21:28:46 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14180.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14180hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd03121 alpha_CARP_X_XI_like C 100.0 4.1E-45 8.9E-50 277.8 15.3 128 2-131 12-141 (256)
2 cd03119 alpha_CA_I_II_III_XIII 100.0 2E-44 4.4E-49 274.4 15.2 127 2-131 20-148 (259)
3 cd03120 alpha_CARP_VIII Carbon 100.0 3.3E-44 7.2E-49 272.8 15.2 127 2-131 8-138 (256)
4 cd03149 alpha_CA_VII Carbonic 100.0 7.7E-44 1.7E-48 268.0 14.4 123 7-131 1-125 (236)
5 cd03150 alpha_CA_IX Carbonic a 100.0 7.8E-44 1.7E-48 269.5 13.4 125 2-131 9-136 (247)
6 cd03118 alpha_CA_V Carbonic an 100.0 2E-43 4.4E-48 265.8 15.2 123 7-131 1-125 (236)
7 cd03126 alpha_CA_XII_XIV Carbo 100.0 2.4E-43 5.2E-48 267.2 15.2 125 2-131 9-137 (249)
8 cd03123 alpha_CA_VI_IX_XII_XIV 100.0 2E-43 4.4E-48 267.4 14.5 126 2-131 9-138 (248)
9 cd03125 alpha_CA_VI Carbonic a 100.0 3.3E-43 7.2E-48 266.4 14.9 125 2-131 9-137 (249)
10 cd03122 alpha_CARP_receptor_li 100.0 1.9E-42 4.1E-47 262.8 15.5 127 2-131 9-140 (253)
11 PF00194 Carb_anhydrase: Eukar 100.0 1.3E-42 2.8E-47 263.9 12.5 128 2-131 16-145 (256)
12 cd03117 alpha_CA_IV_XV_like Ca 100.0 8.1E-42 1.8E-46 256.8 14.2 121 7-131 1-123 (234)
13 KOG0382|consensus 100.0 3E-40 6.4E-45 251.1 14.1 128 2-131 21-151 (262)
14 cd00326 alpha_CA Carbonic anhy 100.0 1.1E-39 2.4E-44 244.2 14.3 121 7-131 1-121 (227)
15 PLN02202 carbonate dehydratase 100.0 6.7E-34 1.5E-38 218.9 12.0 106 2-131 49-156 (284)
16 cd03124 alpha_CA_prokaryotic_l 100.0 1.9E-33 4.1E-38 209.1 12.3 106 2-131 12-118 (216)
17 PLN02179 carbonic anhydrase 100.0 1.5E-33 3.3E-38 211.8 11.7 106 2-131 57-163 (235)
18 COG3338 Cah Carbonic anhydrase 100.0 2.2E-31 4.7E-36 195.9 8.5 105 2-131 46-151 (250)
19 PF09211 DUF1958: Domain of un 53.1 5.6 0.00012 24.2 0.4 16 86-101 7-22 (65)
20 PF00976 ACTH_domain: Corticot 50.2 7.5 0.00016 21.0 0.6 7 76-82 6-12 (39)
21 PF07385 DUF1498: Protein of u 27.4 1.1E+02 0.0024 23.1 3.9 32 71-107 98-129 (225)
22 PF08942 DUF1919: Domain of un 23.5 36 0.00077 25.3 0.6 17 96-117 93-109 (201)
23 COG3402 Uncharacterized conser 23.2 43 0.00094 24.0 1.0 29 62-95 111-139 (161)
24 PF06255 DUF1020: Protein of u 21.8 87 0.0019 24.8 2.5 43 42-91 65-110 (327)
No 1
>cd03121 alpha_CARP_X_XI_like Carbonic anhydrase alpha related protein: groups X, XI and related proteins. This subgroup contains carbonic anhydrase related proteins (CARPs) X and XI, which have been implicated in various biological processes of the central nervous system. CARPs are sequence similar to carbonic anhydrases. Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism. CARPs have lost conserved histidines involved in zinc binding and consequently their catalytic activity. CARP XI plays a role in the development of gastrointestinal stromal tumors.
Probab=100.00 E-value=4.1e-45 Score=277.79 Aligned_cols=128 Identities=34% Similarity=0.661 Sum_probs=115.2
Q ss_pred CCCC-CCCCCCCceEeCCceeecCCCCCCCeeeeecCCCceEEEecCcEEEEEeCCCC-ceEecCCCCccEEeEEEEEee
Q psy14180 2 FPEA-SGERQSPVNVDTTKVSSDKTLEEKPLTWKYNPDKTKTITNPGYCWRVDVDGED-SELTGGPLHHKYRLEQFHCHW 79 (131)
Q Consensus 2 ~~~c-~G~~QSPI~I~~~~~~~~~~~~l~~l~~~Y~~~~~~~i~N~g~t~~~~~~~~~-~~i~gg~l~~~Y~l~q~HfHw 79 (131)
|..| .|++||||||.+..+.+++. +.+|.|+|......++.|+|||+++.+.++. ..+.||+|..+|+|.||||||
T Consensus 12 ~~~C~~G~~QSPI~I~~~~~~~~~~--l~~L~~~~~~~~~~~l~N~Ghtv~v~~~~~~~~~i~gG~l~~~Y~l~Q~HFHw 89 (256)
T cd03121 12 WNLCSKGRRQSPVDIEPSRLLFDPF--LTPLRIDTGRKVSGTFYNTGRHVSFRPDKDPVVNISGGPLSYRYRLEEIRLHF 89 (256)
T ss_pred hhhccCCCCcCCEeEeccceEECCC--CCceeeccCCCCceEEEECCEEEEEEECCCCceEEeCCCCCCcEEEEEEEEec
Confidence 5589 69999999999988877777 8899997763346899999999999986543 267799988999999999999
Q ss_pred cCCCCCCcceeeCCcccceeEeeEEecCCCCCChhhhcCCCCcEEEEEEEcC
Q psy14180 80 GCVSNKGSEHTVDGKAYAGELHLVHWNSDKYSTFGEAAGQPDGLAVLGVLLE 131 (131)
Q Consensus 80 G~~~~~~SEH~idG~~~~~E~HlVh~~~~~~~~~~~a~~~~~glaVl~v~~~ 131 (131)
|+++..||||+|||++|||||||||++.++|.+++||...++|+|||||||+
T Consensus 90 G~~~~~gSEH~idG~~yp~E~HlVH~n~~~y~~~~~A~~~~~glaVvgv~~~ 141 (256)
T cd03121 90 GREDEQGSEHTVNGQAFPGEVQLIHYNSELYPNFSEASKSPNGLVIVSLFVK 141 (256)
T ss_pred CCCCCCCCceeeCCcccCceEEEEEEcccccCCHHHHhcCCCCeEEEEEEEe
Confidence 9999999999999999999999999998899999999999999999999985
No 2
>cd03119 alpha_CA_I_II_III_XIII Carbonic anhydrase alpha, isozymes I, II, and III and XIII. Carbonic anhydrases (CAs) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism: a nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. Most alpha CAs are monomeric enzymes. The zinc ion is complexed by three histidines. This vertebrate subgroup comprises isozymes I, II, and III, which are cytoplasmic enzymes. CA I, for example, is expressed in erythrocyes of many vertebrates; CA II is the most active cytosolic isozyme; while it is being expressed nearly ubiquitously, it comprises 95% of the renal carbonic anhydrase and is required for renal acidification; C
Probab=100.00 E-value=2e-44 Score=274.41 Aligned_cols=127 Identities=58% Similarity=1.014 Sum_probs=115.4
Q ss_pred CCCCCCCCCCCceEeCCceeecCCCCCCCeeeeecCCCceEEEecCcEEEEEeCCCC--ceEecCCCCccEEeEEEEEee
Q psy14180 2 FPEASGERQSPVNVDTTKVSSDKTLEEKPLTWKYNPDKTKTITNPGYCWRVDVDGED--SELTGGPLHHKYRLEQFHCHW 79 (131)
Q Consensus 2 ~~~c~G~~QSPI~I~~~~~~~~~~~~l~~l~~~Y~~~~~~~i~N~g~t~~~~~~~~~--~~i~gg~l~~~Y~l~q~HfHw 79 (131)
||.|.|++||||||.+..+++++. +.+|.++|+.....++.|+|||+++.+.+.. ..+.||+|..+|+|.||||||
T Consensus 20 ~~~~~G~~QSPI~I~~~~~~~~~~--l~~l~~~y~~~~~~~l~N~G~tv~~~~~~~~~~~~~~gg~l~~~Y~l~q~HfHw 97 (259)
T cd03119 20 FPIAKGDRQSPIDIKTKDAKHDPS--LKPLSVSYDPATAKTILNNGHSFNVEFDDTDDRSVLRGGPLTGSYRLRQFHFHW 97 (259)
T ss_pred CcCCCCCCCCCEeEccCeeeEcCC--CCceecccccCcceEEEeCCeeEEEEeCCCCCcceEeCCCCCCcEEEEEEEEEe
Confidence 456899999999999988877777 8899999986556799999999999987532 378899998999999999999
Q ss_pred cCCCCCCcceeeCCcccceeEeeEEecCCCCCChhhhcCCCCcEEEEEEEcC
Q psy14180 80 GCVSNKGSEHTVDGKAYAGELHLVHWNSDKYSTFGEAAGQPDGLAVLGVLLE 131 (131)
Q Consensus 80 G~~~~~~SEH~idG~~~~~E~HlVh~~~~~~~~~~~a~~~~~glaVl~v~~~ 131 (131)
|..+..||||+|||++|||||||||++. +|.++++|...++|||||||||+
T Consensus 98 G~~~~~gSEH~idg~~~p~E~HlVH~n~-~y~~~~~A~~~~~glaVvgvl~~ 148 (259)
T cd03119 98 GSSDDHGSEHTVDGVKYAAELHLVHWNS-KYGSFGEAAKQPDGLAVVGVFLK 148 (259)
T ss_pred CCCCCCCccceecCccccceEEEEEecc-cCCCHHHHhcCCCCeEEEEEEEE
Confidence 9999999999999999999999999998 89999999999999999999985
No 3
>cd03120 alpha_CARP_VIII Carbonic anhydrase alpha related protein, group VIII. Carbonic anhydrase related proteins (CARPs) are sequence similar to carbonic anhydrases. Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism. CARPs have lost conserved histidines involved in zinc binding and consequently their catalytic activity. CARP VIII may play roles in various biological processes of the central nervous system, and could be involved in protein-protein interactions. CARP VIII has been shown to bind inositol 1,4,5-triphosphate (IP3) receptor type I (IP3RI), reducing the affinity of the receptor for IP3. IP3RI is an intracellular IP3-gated Ca2+ channel located on intracellular Ca2+ stores. IP3RI converts IP3 signaling into Ca2+ signaling thereby participating in a variety of cell functions.
Probab=100.00 E-value=3.3e-44 Score=272.82 Aligned_cols=127 Identities=39% Similarity=0.719 Sum_probs=114.1
Q ss_pred CCCCCCCCCCCceEeCCceeecCCCCCC--CeeeeecCCCceEEEecCcEEEEEeCCCCceEecCCCC--ccEEeEEEEE
Q psy14180 2 FPEASGERQSPVNVDTTKVSSDKTLEEK--PLTWKYNPDKTKTITNPGYCWRVDVDGEDSELTGGPLH--HKYRLEQFHC 77 (131)
Q Consensus 2 ~~~c~G~~QSPI~I~~~~~~~~~~~~l~--~l~~~Y~~~~~~~i~N~g~t~~~~~~~~~~~i~gg~l~--~~Y~l~q~Hf 77 (131)
+|.|.|++||||||.+..+.+++. +. +|.++|+....+++.|+|||++|.+.+.. .+.||+|. .+|+|.||||
T Consensus 8 ~~~c~G~~QSPInI~~~~~~~~~~--~~~~~l~~~y~~~~~~~l~N~Ghtv~v~~~~~~-~~~gg~l~~~~~Y~l~q~HF 84 (256)
T cd03120 8 FPEANGEYQSPINLNSREARYDPS--LLEVRLSPNYVVCRDCEVINDGHTIQIILKSKS-VLSGGPLPQGHEFELAEVRF 84 (256)
T ss_pred CCCCCCCcCCCccCccCceEECCC--CCcccceeccCCCCceEEEECCeEEEEEeCCCc-eeecCCCCCCceEEEEEEEE
Confidence 578999999999999988877777 65 57778875546799999999999987654 78899884 6899999999
Q ss_pred eecCCCCCCcceeeCCcccceeEeeEEecCCCCCChhhhcCCCCcEEEEEEEcC
Q psy14180 78 HWGCVSNKGSEHTVDGKAYAGELHLVHWNSDKYSTFGEAAGQPDGLAVLGVLLE 131 (131)
Q Consensus 78 HwG~~~~~~SEH~idG~~~~~E~HlVh~~~~~~~~~~~a~~~~~glaVl~v~~~ 131 (131)
|||+++..||||+|||++|||||||||++.++|.++++|+..++|||||||||+
T Consensus 85 HwG~~~~~gSEH~idG~~yp~E~HlVH~n~~~y~~~~~A~~~~~glaVlgv~~~ 138 (256)
T cd03120 85 HWGRENQRGSEHTVNFKAFPMELHLIHWNSTLYSSLEEAMGKPHGIAIIALFVQ 138 (256)
T ss_pred EeCCCCCCCCceeecCccccceEEEEEecCcccCCHHHHhcCCCceEEEEEEEe
Confidence 999999999999999999999999999998889999999999999999999985
No 4
>cd03149 alpha_CA_VII Carbonic anhydrase alpha, CA isozyme VII_like subgroup. Carbonic anhydrases (CAs) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism: a nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. Most alpha CAs are monomeric enzymes. The zinc ion is complexed by three histidines. This vertebrate subgroup comprises isozyme VII. CA VII is the most active cytosolic enzyme after CA II, and may be highly expressed in the brain. Human CA VII may be a target of antiepileptic sulfonamides/sulfamates.
Probab=100.00 E-value=7.7e-44 Score=268.05 Aligned_cols=123 Identities=53% Similarity=0.955 Sum_probs=112.7
Q ss_pred CCCCCCceEeCCceeecCCCCCCCeeeeecCCCceEEEecCcEEEEEeCCC--CceEecCCCCccEEeEEEEEeecCCCC
Q psy14180 7 GERQSPVNVDTTKVSSDKTLEEKPLTWKYNPDKTKTITNPGYCWRVDVDGE--DSELTGGPLHHKYRLEQFHCHWGCVSN 84 (131)
Q Consensus 7 G~~QSPI~I~~~~~~~~~~~~l~~l~~~Y~~~~~~~i~N~g~t~~~~~~~~--~~~i~gg~l~~~Y~l~q~HfHwG~~~~ 84 (131)
|++||||||.+..+.+++. +.+|.++|+....+++.|+|||+++.+.++ ...+.||+|..+|+|.|||||||++++
T Consensus 1 G~~QSPInI~~~~~~~~~~--l~~l~~~y~~~~~~~~~N~Ghtv~v~~~~~~~~~~~~gg~l~~~Y~l~q~HfHwG~~~~ 78 (236)
T cd03149 1 GNRQSPIDIVSSEAVYDPK--LKPLSLSYDPCTSLSISNNGHSVMVEFDDSDDKTVITGGPLENPYRLKQFHFHWGAKHG 78 (236)
T ss_pred CCCCCCeeEccCceEECCC--CCceEeecCCCcceEEEECCEEEEEEecCCCCceEEecCCCCCcEEEEEEEEecCCCCC
Confidence 7899999999998887777 889999998655689999999999998642 237889999899999999999999999
Q ss_pred CCcceeeCCcccceeEeeEEecCCCCCChhhhcCCCCcEEEEEEEcC
Q psy14180 85 KGSEHTVDGKAYAGELHLVHWNSDKYSTFGEAAGQPDGLAVLGVLLE 131 (131)
Q Consensus 85 ~~SEH~idG~~~~~E~HlVh~~~~~~~~~~~a~~~~~glaVl~v~~~ 131 (131)
.||||+|||++|||||||||+|.++|.|+++|+.+++|+|||||||+
T Consensus 79 ~gSEH~idg~~yp~E~HlVH~n~~~y~~~~~A~~~~~glaVlgv~~~ 125 (236)
T cd03149 79 SGSEHTVDGKTFPSELHLVHWNAKKYKSFGEAAAAPDGLAVLGVFLE 125 (236)
T ss_pred CCCceeecCeeccceeeeeEecccccCCHHHHhhccCCcEEEEEEEE
Confidence 99999999999999999999998789999999999999999999985
No 5
>cd03150 alpha_CA_IX Carbonic anhydrase alpha, isozyme IX. Carbonic anhydrases (CAs) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism: a nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Alpha CAs are strictly monomeric enzymes. The zinc ion is complexed by three histidine residues. This sub-family comprises the membrane protein CA IX. CA IX is functionally implicated in tumor growth and survival. CA IX is mainly present in solid tumors and its expression in normal tissues is limited t
Probab=100.00 E-value=7.8e-44 Score=269.54 Aligned_cols=125 Identities=34% Similarity=0.610 Sum_probs=112.5
Q ss_pred CCCCCCCCCCCceEeCCceeecCCCCCCCeee-eecCC--CceEEEecCcEEEEEeCCCCceEecCCCCccEEeEEEEEe
Q psy14180 2 FPEASGERQSPVNVDTTKVSSDKTLEEKPLTW-KYNPD--KTKTITNPGYCWRVDVDGEDSELTGGPLHHKYRLEQFHCH 78 (131)
Q Consensus 2 ~~~c~G~~QSPI~I~~~~~~~~~~~~l~~l~~-~Y~~~--~~~~i~N~g~t~~~~~~~~~~~i~gg~l~~~Y~l~q~HfH 78 (131)
+|.|+|++||||||.+..+.+++. +++|.| +|+.. ...++.|+|||++|.+.++. .+++|+ +.+|+|.|||||
T Consensus 9 ~~~c~G~~QSPIdI~~~~~~~~~~--l~~l~~~~y~~~~~~~~~i~N~Ghtv~v~~~~~~-~~~~g~-~~~Y~l~QfHfH 84 (247)
T cd03150 9 SPACAGRFQSPVDIRPHLVAFCPA--LRPLELLGFDLPPSPSLRLLNNGHTVQLSLPSGL-RMALGP-GQEYRALQLHLH 84 (247)
T ss_pred CCCCCCCCcCCEeeccCceeECCC--CCCceeeccccCCCCceEEEECCEEEEEEEeccc-ccccCC-CCcEEEEEEEEE
Confidence 467999999999999988877777 889998 78742 35799999999999987654 677665 689999999999
Q ss_pred ecCCCCCCcceeeCCcccceeEeeEEecCCCCCChhhhcCCCCcEEEEEEEcC
Q psy14180 79 WGCVSNKGSEHTVDGKAYAGELHLVHWNSDKYSTFGEAAGQPDGLAVLGVLLE 131 (131)
Q Consensus 79 wG~~~~~~SEH~idG~~~~~E~HlVh~~~~~~~~~~~a~~~~~glaVl~v~~~ 131 (131)
||++++.||||+|||++|||||||||+|. +|.+++||++.++||||||+||+
T Consensus 85 wG~~~~~gSEH~idg~~yp~E~HlVH~n~-~y~~~~~A~~~~~glaVl~v~~~ 136 (247)
T cd03150 85 WGAAGRPGSEHTVDGHRFPAEIHVVHLST-AFANLDEALGRPGGLAVLAAFLA 136 (247)
T ss_pred eCCCCCCCcceeeCCcccchhhheeeecc-cCCCHHHHhcCCCCcEEEEEEEE
Confidence 99999999999999999999999999998 89999999999999999999985
No 6
>cd03118 alpha_CA_V Carbonic anhydrase alpha, CA isozyme V_like subgroup. Carbonic anhydrases (CAs) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism: a nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. Most alpha CAs are monomeric enzymes. The zinc ion is complexed by three histidines. This vertebrate subgroup comprises isozyme V. CA V is the mitochondrial isozyme, which may play a role in gluconeogenesis and ureagenesis and possibly also in lipogenesis.
Probab=100.00 E-value=2e-43 Score=265.75 Aligned_cols=123 Identities=50% Similarity=0.875 Sum_probs=112.4
Q ss_pred CCCCCCceEeCCceeecCCCCCCCeeeeecCCCceEEEecCcEEEEEeCCCC--ceEecCCCCccEEeEEEEEeecCCCC
Q psy14180 7 GERQSPVNVDTTKVSSDKTLEEKPLTWKYNPDKTKTITNPGYCWRVDVDGED--SELTGGPLHHKYRLEQFHCHWGCVSN 84 (131)
Q Consensus 7 G~~QSPI~I~~~~~~~~~~~~l~~l~~~Y~~~~~~~i~N~g~t~~~~~~~~~--~~i~gg~l~~~Y~l~q~HfHwG~~~~ 84 (131)
|++||||||.+..+.+++. +.+|.++|+....+++.|+|||+++.+.++. ..+.||+|..+|+|.|||||||+++.
T Consensus 1 G~~QSPIdI~~~~~~~~~~--l~~l~~~y~~~~~~~l~N~Ghtv~v~~~~~~~~~~~~gg~l~~~Y~l~q~HfHwG~~~~ 78 (236)
T cd03118 1 GTRQSPINIQWRDSVYDPQ--LAPLRVSYDPATCLYIWNNGYSFQVEFDDSTDKSGISGGPLENHYRLKQFHFHWGANNE 78 (236)
T ss_pred CCcCCCeeEecCceeECCC--CCceEEecCCCCceEEEECCEEEEEEecCCCCceEEecCCCCCcEEEEEEEEEECCCCC
Confidence 7899999999988877777 8899999986556799999999999986532 37889999899999999999999999
Q ss_pred CCcceeeCCcccceeEeeEEecCCCCCChhhhcCCCCcEEEEEEEcC
Q psy14180 85 KGSEHTVDGKAYAGELHLVHWNSDKYSTFGEAAGQPDGLAVLGVLLE 131 (131)
Q Consensus 85 ~~SEH~idG~~~~~E~HlVh~~~~~~~~~~~a~~~~~glaVl~v~~~ 131 (131)
.||||+|||++|||||||||++.++|.++++|...++|||||||||+
T Consensus 79 ~gSEH~idg~~~p~E~HlVH~n~~~y~~~~~A~~~~~~laVvgv~~~ 125 (236)
T cd03118 79 WGSEHTVDGHTYPAELHLVHWNSVKYENFEEAVMEENGLAVIGVFLK 125 (236)
T ss_pred CCCceEECCEeccceeeEEEEcccccCCHHHHhcCCCCeEEEEEEEE
Confidence 99999999999999999999998899999999999999999999985
No 7
>cd03126 alpha_CA_XII_XIV Carbonic anhydrase alpha, isozymes XII and XIV. Carbonic anhydrases (CAs) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism: a nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Most alpha CAs are monomeric enzymes. The zinc ion is complexed by three histidine residues. This sub-family comprises the membrane proteins CA XII and XIV.
Probab=100.00 E-value=2.4e-43 Score=267.17 Aligned_cols=125 Identities=41% Similarity=0.715 Sum_probs=111.0
Q ss_pred CCCCCCCCCCCceEeCCceeecCCCCCCCeee-eecCC--CceEEEecCcEEEEEeCCCCceEecCCCCccEEeEEEEEe
Q psy14180 2 FPEASGERQSPVNVDTTKVSSDKTLEEKPLTW-KYNPD--KTKTITNPGYCWRVDVDGEDSELTGGPLHHKYRLEQFHCH 78 (131)
Q Consensus 2 ~~~c~G~~QSPI~I~~~~~~~~~~~~l~~l~~-~Y~~~--~~~~i~N~g~t~~~~~~~~~~~i~gg~l~~~Y~l~q~HfH 78 (131)
||.|.|++||||||.+..+.+++. +++|.| +|+.. ...++.|+|||+++.+.+.. .+ ++++.+|+|.|||||
T Consensus 9 ~~~C~G~~QSPInI~~~~~~~~~~--l~~l~~~~y~~~~~~~~~l~N~Ghtv~v~~~~~~-~~--~~l~~~Y~l~qfHfH 83 (249)
T cd03126 9 YPFCGGVAQSPIDIHTDILQYDSS--LPPLEFHGYNVSGTEQFTLTNNGHTVQLSLPPTM-HI--GGLPFKYTASQLHLH 83 (249)
T ss_pred CCCCCCCccCCEeEecCceeECCC--CCccEEeccccCCCCceEEEECCEeEEEEEcCCc-ee--cCCCccEEEEEEEEE
Confidence 678999999999999988877777 899999 79853 35799999999999987543 44 456689999999999
Q ss_pred ecCCCC-CCcceeeCCcccceeEeeEEecCCCCCChhhhcCCCCcEEEEEEEcC
Q psy14180 79 WGCVSN-KGSEHTVDGKAYAGELHLVHWNSDKYSTFGEAAGQPDGLAVLGVLLE 131 (131)
Q Consensus 79 wG~~~~-~~SEH~idG~~~~~E~HlVh~~~~~~~~~~~a~~~~~glaVl~v~~~ 131 (131)
||++++ .||||+|||++|||||||||+|.++|.++++|..+++|||||||||+
T Consensus 84 wG~~~~~~gSEH~idG~~y~~E~HlVH~n~~~y~~~~~A~~~~~glaVl~v~~~ 137 (249)
T cd03126 84 WGQRGSPEGSEHTISGKHFAAELHIVHYNSDKYPDISTAMNKSQGLAVLGILIE 137 (249)
T ss_pred eCCCCCCCCceeeecCcccCceEEEEEecCccCCCHHHHhhcCCCeEEEEEEEE
Confidence 999654 89999999999999999999998899999999999999999999985
No 8
>cd03123 alpha_CA_VI_IX_XII_XIV Carbonic anhydrase alpha, isozymes VI, IX, XII and XIV. Carbonic anhydrases (CAs) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism: a nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Alpha CAs are mostly monomeric enzymes. The zinc ion is complexed by three histidine residues. This sub-family comprises the secreted CA VI, which is found in saliva, for example, and the membrane proteins CA IX, XII, and XIV.
Probab=100.00 E-value=2e-43 Score=267.44 Aligned_cols=126 Identities=45% Similarity=0.785 Sum_probs=113.0
Q ss_pred CCCCCCCCCCCceEeCCceeecCCCCCCCeee-eecCC--CceEEEecCcEEEEEeCCCCceEecCCCCccEEeEEEEEe
Q psy14180 2 FPEASGERQSPVNVDTTKVSSDKTLEEKPLTW-KYNPD--KTKTITNPGYCWRVDVDGEDSELTGGPLHHKYRLEQFHCH 78 (131)
Q Consensus 2 ~~~c~G~~QSPI~I~~~~~~~~~~~~l~~l~~-~Y~~~--~~~~i~N~g~t~~~~~~~~~~~i~gg~l~~~Y~l~q~HfH 78 (131)
||.|.|++||||||.+..+.+++. +++|.| +|+.. ...++.|+|||+++.+.+.. .++||+ ..+|+|.|||||
T Consensus 9 ~~~C~G~~QSPInI~~~~~~~~~~--l~~l~~~~y~~~~~~~~~i~N~Ghtv~v~~~~~~-~~~gg~-~~~Y~l~qfHfH 84 (248)
T cd03123 9 YPACGGKRQSPIDIQTDIVQFDPS--LPPLELVGYDLPGTEEFTLTNNGHTVQLSLPPTM-HIRGGP-GTEYTAAQLHLH 84 (248)
T ss_pred CcCCCCCCCCCEeEeccceeecCC--CCcceecccccCCCCceEEEECCeeEEEEeCCCc-cccCCC-CCCEEEEEEEEe
Confidence 588999999999999988877777 889998 79753 26799999999999987654 676665 479999999999
Q ss_pred ecCCC-CCCcceeeCCcccceeEeeEEecCCCCCChhhhcCCCCcEEEEEEEcC
Q psy14180 79 WGCVS-NKGSEHTVDGKAYAGELHLVHWNSDKYSTFGEAAGQPDGLAVLGVLLE 131 (131)
Q Consensus 79 wG~~~-~~~SEH~idG~~~~~E~HlVh~~~~~~~~~~~a~~~~~glaVl~v~~~ 131 (131)
||+.+ ..||||+|||++|||||||||++.++|.++++|...++++|||||||+
T Consensus 85 wG~~~~~~gSEH~idG~~yp~E~HlVh~n~~~y~~~~~A~~~~~~laVl~v~~~ 138 (248)
T cd03123 85 WGGRGSLSGSEHTIDGIRFAAELHIVHYNSDKYSSFDEAADKPDGLAVLAILIE 138 (248)
T ss_pred eCCCCCCCCccceecCccCcceeEEEEEcccccCCHHHHhcCCCCeEEEEEEEE
Confidence 99988 589999999999999999999998899999999999999999999985
No 9
>cd03125 alpha_CA_VI Carbonic anhydrase alpha, isozyme VI. Carbonic anhydrases (CAs) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism: a nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Most alpha CAs are monomeric enzymes. The zinc ion is complexed by three histidine residues. This sub-family comprises the secreted CA VI, which is found in saliva.
Probab=100.00 E-value=3.3e-43 Score=266.37 Aligned_cols=125 Identities=39% Similarity=0.675 Sum_probs=111.7
Q ss_pred CCCCCCCCCCCceEeCCceeecCCCCCCCeee-eecC-CCceEEEecCcEEEEEeCCCCceEecCCCCccEEeEEEEEee
Q psy14180 2 FPEASGERQSPVNVDTTKVSSDKTLEEKPLTW-KYNP-DKTKTITNPGYCWRVDVDGEDSELTGGPLHHKYRLEQFHCHW 79 (131)
Q Consensus 2 ~~~c~G~~QSPI~I~~~~~~~~~~~~l~~l~~-~Y~~-~~~~~i~N~g~t~~~~~~~~~~~i~gg~l~~~Y~l~q~HfHw 79 (131)
||.|+|++||||||.+..+.+++. +.+|.| +|+. ....++.|+|||+++.+.++. .++++ ++.+|+|.||||||
T Consensus 9 ~~~C~G~~QSPInI~~~~~~~~~~--l~~l~~~~y~~~~~~~~i~N~Ghtv~v~~~~~~-~~~~~-~~~~Y~l~q~HFHW 84 (249)
T cd03125 9 YPACGGKRQSPIDIQRREVRFNPS--LLQLELVGYEKEQGEFTMTNNGHTVQIDLPPTM-SITTG-DGTVYTAVQMHFHW 84 (249)
T ss_pred CcCCCCCCCCCEeEccCceeECCC--CCceEeecccCCCccEEEEECCEEEEEEeCCCc-ccccC-CCCCEEEEEEEEEe
Confidence 689999999999999988877777 889998 8975 345899999999999987655 56554 56899999999999
Q ss_pred cCCCC--CCcceeeCCcccceeEeeEEecCCCCCChhhhcCCCCcEEEEEEEcC
Q psy14180 80 GCVSN--KGSEHTVDGKAYAGELHLVHWNSDKYSTFGEAAGQPDGLAVLGVLLE 131 (131)
Q Consensus 80 G~~~~--~~SEH~idG~~~~~E~HlVh~~~~~~~~~~~a~~~~~glaVl~v~~~ 131 (131)
|.++. .||||+|||++|||||||||++. +|.++++|...++|+|||||||+
T Consensus 85 G~~~~~~~gSEH~idG~~yp~E~HlVH~n~-~y~~~~~a~~~~~glaVl~v~~~ 137 (249)
T cd03125 85 GGRDSEISGSEHTIDGMRYVAELHIVHYNS-KYKSYEEAKDKPDGLAVLAFLYK 137 (249)
T ss_pred cCCCCCCCCccceeccccCCceEEEEEecC-CCCCHHHHhcCCCceEEEEEEEE
Confidence 99875 89999999999999999999998 89999999999999999999985
No 10
>cd03122 alpha_CARP_receptor_like Carbonic anhydrase alpha related protein, receptor_like subfamily. Carbonic anhydrase related proteins (CARPs) are sequence similar to carbonic anhydrases. Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism. CARPs have lost conserved histidines involved in zinc binding and consequently their catalytic activity. This sub-family of carbonic anhydrase-related domains found in tyrosine phosphatase receptors may play a role in cell adhesion.
Probab=100.00 E-value=1.9e-42 Score=262.83 Aligned_cols=127 Identities=28% Similarity=0.597 Sum_probs=109.5
Q ss_pred CCCCC-CCCCCCceEeCCceeecCCCCCCCeeeee-cC-CCceEEEecCcEEEEEeCCC--CceEecCCCCccEEeEEEE
Q psy14180 2 FPEAS-GERQSPVNVDTTKVSSDKTLEEKPLTWKY-NP-DKTKTITNPGYCWRVDVDGE--DSELTGGPLHHKYRLEQFH 76 (131)
Q Consensus 2 ~~~c~-G~~QSPI~I~~~~~~~~~~~~l~~l~~~Y-~~-~~~~~i~N~g~t~~~~~~~~--~~~i~gg~l~~~Y~l~q~H 76 (131)
|+.|. |++||||||.+..+..... +++|.|.| +. ....++.|+|||+++.+.++ ...|.||+|..+|+|.|||
T Consensus 9 ~~~C~~G~~QSPIdI~~~~~~~~~~--l~~l~~~~~~~~~~~~~l~N~Ghtv~v~~~~~~~~~~i~gg~l~~~Y~l~q~H 86 (253)
T cd03122 9 YPACGEGRQQSPIDIVEDTQVQRQG--LQPLHFDGYEELTASTTLENTGKTVILRLEGNSSDPFVSGGPLLGRYKFSEIT 86 (253)
T ss_pred CCcCCCCCCCCCEeEeecceeccCC--CCCeEEeccCCCCCceEEEECCeEEEEEecCCCCceEEeCCCCCCcEEEEEEE
Confidence 57895 9999999999864443333 67899954 32 24689999999999998753 2389999999999999999
Q ss_pred EeecCCCCCCcceeeCCcccceeEeeEEecCCCCCChhhhcCCCCcEEEEEEEcC
Q psy14180 77 CHWGCVSNKGSEHTVDGKAYAGELHLVHWNSDKYSTFGEAAGQPDGLAVLGVLLE 131 (131)
Q Consensus 77 fHwG~~~~~~SEH~idG~~~~~E~HlVh~~~~~~~~~~~a~~~~~glaVl~v~~~ 131 (131)
||||+++..||||+|||++|||||||||++. +|.++.||.+.++|+|||||||+
T Consensus 87 FHwG~~~~~gSEH~idg~~yp~E~H~VH~n~-~~~~~~~A~~~~~~laVv~vl~~ 140 (253)
T cd03122 87 FHWGTCNSDGSEHSIDGHKFPLEMQILHRNT-DFFDSFEAIKSPGGVLALAYLFE 140 (253)
T ss_pred EEeCCCCCCCCceeecCccCcceEEEEEEcC-CCCCHHHHhhcCCCeEEEEEEEE
Confidence 9999999999999999999999999999998 67787899999999999999985
No 11
>PF00194 Carb_anhydrase: Eukaryotic-type carbonic anhydrase; InterPro: IPR001148 Carbonic anhydrases (CA: 4.2.1.1 from EC) are zinc metalloenzymes which catalyse the reversible hydration of carbon dioxide to bicarbonate [, ]. CAs have essential roles in facilitating the transport of carbon dioxide and protons in the intracellular space, across biological membranes and in the layers of the extracellular space; they are also involved in many other processes, from respiration and photosynthesis in eukaryotes to cyanate degradation in prokaryotes. There are five known evolutionarily distinct CA families (alpha, beta, gamma, delta and epsilon) that have no significant sequence identity and have structurally distinct overall folds. Some CAs are membrane-bound, while others act in the cytosol; there are several related proteins that lack enzymatic activity. The active site of alpha-CAs is well described, consisting of a zinc ion coordinated through 3 histidine residues and a water molecule/hydroxide ion that acts as a potent nucleophile. The enzyme employs a two-step mechanism: in the first step, there is a nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide; in the second step, the active site is regenerated by the ionisation of the zinc-bound water molecule and the removal of a proton from the active site []. Beta- and gamma-CAs also employ a zinc hydroxide mechanism, although at least some beta-class enzymes do not have water directly coordinated to the metal ion. The alpha-CAs are found predominantly in animals but also in bacteria and green algae. There are at least 15 isoforms found in mammals, which can be subdivided into cytosolic CAs (CA-I, CA-II, CA-III, CA-VII and CA XIII), mitochondrial CAs (CA-VA and CA-VB), secreted CAs (CA-VI), membrane-associated (CA-IV, CA-IX, CA-XII and CA-XIV) and those without CA activity, the CA-related proteins (CA-RP VIII, X and XI). The beta-CAs are highly abundant in plants, diatoms, eubacteria and archaea [, ]. The beta-CAs are far more diverse in sequence than other classes, and can be divided into different clades based on sequence identity, with the plant enzymes forming two clades representing dicotyledonous and monocotyledonous plants. Characterisation of these enzymes reveals sharp differences between the beta class, which forms dimers, tetramers, hexamers and octomers, and the alpha and gamma classes, which form strictly monomers and trimers. The gamma-CAs may be the most ancient form of carbonic anhydrases, having evolved long before the alpha class, to which it is more closely related than to the beta-class [, ]. The reaction mechanism of the gamma-class is similar to that of the alpha-class, even though the overall folds are dissimilar and the active site residues differ. The delta-CAs are found in marine algae and dinoflagellates []. The epsilon-CAs are found in prokaryotes such as Thiobacillus neapolitanus (Halothiobacillus neapolitanus) in which it is a component of the carboxysome shell, where it could supply the active sites of RuBisCO in the carboxysome with the high concentrations of carbon dioxide necessary for optimal RuBisCO activity and efficient carbon fixation []. This entry represents a domain found in alpha class carbonic anhydrases. More information about these proteins can be found at Protein of the Month: Carbonic Anhydrase [].; PDB: 3FE4_A 2W2J_A 3B1B_B 2HFW_A 1Z93_A 1Z97_A 3UYQ_A 3UYN_A 1JD0_B 1JCZ_B ....
Probab=100.00 E-value=1.3e-42 Score=263.94 Aligned_cols=128 Identities=48% Similarity=0.876 Sum_probs=112.3
Q ss_pred CCCCCCCCCCCceEeCCceeecCCCCCCCeeeeecCCCceEEEecCcEEEEEeCCCC--ceEecCCCCccEEeEEEEEee
Q psy14180 2 FPEASGERQSPVNVDTTKVSSDKTLEEKPLTWKYNPDKTKTITNPGYCWRVDVDGED--SELTGGPLHHKYRLEQFHCHW 79 (131)
Q Consensus 2 ~~~c~G~~QSPI~I~~~~~~~~~~~~l~~l~~~Y~~~~~~~i~N~g~t~~~~~~~~~--~~i~gg~l~~~Y~l~q~HfHw 79 (131)
||.|.|++||||||.+..+.+++. +.+|.|.|......++.|+|+++++.+++.. ..+.|+++..+|+|.||||||
T Consensus 16 ~~~~~G~~QSPInI~~~~~~~~~~--l~~l~~~~~~~~~~~~~N~G~tv~v~~~~~~~~~~i~g~~l~~~Y~l~q~HfHw 93 (256)
T PF00194_consen 16 YPCCGGKRQSPININTSEAVYDPS--LPPLKFSYYESSAGTLKNNGHTVQVNFDDTNNKPTISGGPLPGEYRLEQFHFHW 93 (256)
T ss_dssp SGGGGSSS-S-BEE-GGGSEEETT--SEEEEEESTTSGEEEEEE-SSSEEEEECTSSSSSEEEETTESSEEEEEEEEEEE
T ss_pred CcccCCCccCCEeeCcCccccccC--CCCcEEeeccccceEEEecCceEEEEeCCCcccceecCCCccceEEEEEEEEec
Confidence 678899999999999998888877 8899998876655699999999999998742 389999998999999999999
Q ss_pred cCCCCCCcceeeCCcccceeEeeEEecCCCCCChhhhcCCCCcEEEEEEEcC
Q psy14180 80 GCVSNKGSEHTVDGKAYAGELHLVHWNSDKYSTFGEAAGQPDGLAVLGVLLE 131 (131)
Q Consensus 80 G~~~~~~SEH~idG~~~~~E~HlVh~~~~~~~~~~~a~~~~~glaVl~v~~~ 131 (131)
|+++..||||+|||++|||||||||++.++|.++++|.+.++++||||+|++
T Consensus 94 g~~~~~gSEH~idG~~y~~E~H~Vh~~~~~y~~~~~a~~~~~~laVl~v~~~ 145 (256)
T PF00194_consen 94 GSDNSSGSEHTIDGKRYPMEMHFVHRNSKKYSSFEEASKEPDGLAVLGVFFE 145 (256)
T ss_dssp SSSTTSSSSSEETTBE-SEEEEEEEEETTTGSSHHHHTTSTTSEEEEEEEEE
T ss_pred ccCCCCccccchhhhhcccceeeeeeccccccchhhhhhccccceEEEEEee
Confidence 9999999999999999999999999996699999999999999999999985
No 12
>cd03117 alpha_CA_IV_XV_like Carbonic anhydrase alpha, CA_IV, CA_XV, like isozymes. Carbonic anhydrases (CAs) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism: a nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Most alpha CAs are monomeric enzymes. The zinc ion is complexed by three histidine residues. This subgroup, restricted to animals, contains isozyme IV and similar proteins such as mouse CA XV. Isozymes IV is attached to membranes via a glycosylphosphatidylinositol (GPI) tail. I
Probab=100.00 E-value=8.1e-42 Score=256.78 Aligned_cols=121 Identities=44% Similarity=0.738 Sum_probs=111.5
Q ss_pred CCCCCCceEeCCceeecCCCCCCCeee-eecC-CCceEEEecCcEEEEEeCCCCceEecCCCCccEEeEEEEEeecCCCC
Q psy14180 7 GERQSPVNVDTTKVSSDKTLEEKPLTW-KYNP-DKTKTITNPGYCWRVDVDGEDSELTGGPLHHKYRLEQFHCHWGCVSN 84 (131)
Q Consensus 7 G~~QSPI~I~~~~~~~~~~~~l~~l~~-~Y~~-~~~~~i~N~g~t~~~~~~~~~~~i~gg~l~~~Y~l~q~HfHwG~~~~ 84 (131)
|++||||||.+..+.+++. +++|.| +|+. ....++.|+|+|+++.+.+. ..+.||+|..+|+|.|||||||+++.
T Consensus 1 G~~QSPI~I~~~~~~~~~~--l~~L~~~~y~~~~~~~~l~N~G~tv~v~~~~~-~~i~gg~L~~~Y~l~qfHfH~G~~~~ 77 (234)
T cd03117 1 GKRQSPINIVTKKVQYDEN--LTPFTFTGYDDTTTNWTITNNGHTVQVTLPDG-AKISGGGLPGTYKALQFHFHWGSNGS 77 (234)
T ss_pred CCcCCCEEEcccceEECCC--CCcceeccccCCCCceEEEECCeEEEEEecCC-ceEeCCCCCCcEEEEEEEEEeCCCCC
Confidence 7999999999988877777 889999 7975 35789999999999998763 38999999999999999999999999
Q ss_pred CCcceeeCCcccceeEeeEEecCCCCCChhhhcCCCCcEEEEEEEcC
Q psy14180 85 KGSEHTVDGKAYAGELHLVHWNSDKYSTFGEAAGQPDGLAVLGVLLE 131 (131)
Q Consensus 85 ~~SEH~idG~~~~~E~HlVh~~~~~~~~~~~a~~~~~glaVl~v~~~ 131 (131)
.||||+|||++|||||||||++. +|.++.||++.++++|||||||+
T Consensus 78 ~gSEH~idg~~~~~E~HlVH~n~-~~~~~~~A~~~~~~laVv~vl~~ 123 (234)
T cd03117 78 PGSEHTIDGERYPMELHIVHIKE-SYNSLLEALKDSDGLAVLGFFIE 123 (234)
T ss_pred CCCcceeCCeecchheeeeEecC-CCCCHHHHhcCCCceEEEEEEEE
Confidence 99999999999999999999998 79999999999999999999985
No 13
>KOG0382|consensus
Probab=100.00 E-value=3e-40 Score=251.08 Aligned_cols=128 Identities=48% Similarity=0.901 Sum_probs=113.5
Q ss_pred CCCCCCCCCCCceEeCCceeecCCCCCCCeeeeecCCCceEEEecCcEEEEE--eCCCCceEecCCCCc-cEEeEEEEEe
Q psy14180 2 FPEASGERQSPVNVDTTKVSSDKTLEEKPLTWKYNPDKTKTITNPGYCWRVD--VDGEDSELTGGPLHH-KYRLEQFHCH 78 (131)
Q Consensus 2 ~~~c~G~~QSPI~I~~~~~~~~~~~~l~~l~~~Y~~~~~~~i~N~g~t~~~~--~~~~~~~i~gg~l~~-~Y~l~q~HfH 78 (131)
+|.|.|++||||||....+.+++. .+.++.++|+......+.|+|++..+. ...+.+.++||+|.. +|++.|+|||
T Consensus 21 ~~~~~g~~QSPIdi~~~~~~~~~~-~l~~~~~~~~~~~~~~~~nng~~~~v~~~~~~~~~~i~gg~l~~~~y~~~q~hfH 99 (262)
T KOG0382|consen 21 YPEWKGKRQSPIDIKRSQIVYDPD-PLKPLRLSYEYKPCNAVLNNGHSRGVDIMLKGGKPEITGGPLPGIRYRLEQLHFH 99 (262)
T ss_pred CcCcCCCccCCccCccceeeecCc-cccceeeecccCcceEEEeCCceEEEEeecCCCCcceecCCCCCcceeEEEeEee
Confidence 678999999999999999999882 267778888877788999999555554 444444899999977 8999999999
Q ss_pred ecCCCCCCcceeeCCcccceeEeeEEecCCCCCChhhhcCCCCcEEEEEEEcC
Q psy14180 79 WGCVSNKGSEHTVDGKAYAGELHLVHWNSDKYSTFGEAAGQPDGLAVLGVLLE 131 (131)
Q Consensus 79 wG~~~~~~SEH~idG~~~~~E~HlVh~~~~~~~~~~~a~~~~~glaVl~v~~~ 131 (131)
||+.++.||||+|||++|+||||+||+| ++|.+++||++.++|||||||||+
T Consensus 100 Wg~~~~~GSEHti~g~~f~~ElHlVH~n-~~y~~~~eA~~~p~GlAVv~vf~k 151 (262)
T KOG0382|consen 100 WGSPDSKGSEHTINGRRFPAELHLVHWN-TKYENFKEALSKPDGLAVVGVFLK 151 (262)
T ss_pred cCCCCCCCCceecCCeecccEEEEEEec-cccCCHHHHhcCCCcEEEEEEeec
Confidence 9999999999999999999999999999 699999999999999999999986
No 14
>cd00326 alpha_CA Carbonic anhydrase alpha (vertebrate-like) group. Carbonic anhydrases (CAs) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism: a nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Most alpha CAs are monomeric enzymes. The zinc ion is complexed by three histidine residues and a fourth conserved histidine plays a potential role in proton transfer.
Probab=100.00 E-value=1.1e-39 Score=244.21 Aligned_cols=121 Identities=50% Similarity=0.843 Sum_probs=108.9
Q ss_pred CCCCCCceEeCCceeecCCCCCCCeeeeecCCCceEEEecCcEEEEEeCCCCceEecCCCCccEEeEEEEEeecCCCCCC
Q psy14180 7 GERQSPVNVDTTKVSSDKTLEEKPLTWKYNPDKTKTITNPGYCWRVDVDGEDSELTGGPLHHKYRLEQFHCHWGCVSNKG 86 (131)
Q Consensus 7 G~~QSPI~I~~~~~~~~~~~~l~~l~~~Y~~~~~~~i~N~g~t~~~~~~~~~~~i~gg~l~~~Y~l~q~HfHwG~~~~~~ 86 (131)
|++||||||.+..+++++. +++|.+.|......++.|+|+|+++.+.++...+++++|..+|+|.|||||||+.+..|
T Consensus 1 G~~QSPI~I~~~~~~~~~~--l~~l~~~~~~~~~~~i~N~G~tv~~~~~~~~~~i~~~~l~~~y~l~q~HfH~G~~~~~g 78 (227)
T cd00326 1 GKRQSPINIVTSAVVYDPS--LPPLNFDYYPTTSLTLVNNGHTVQVNFDDDGGTLSGGGLPGRYKLVQFHFHWGSENSPG 78 (227)
T ss_pred CCCcCCeEECccceeECCC--CCceeecccCCCceEEEECCeeEEEEecCCCceEeCCCCCCCEEEEEEEEecCCCCCCC
Confidence 7899999999988887776 88999966544468999999999999986444888998889999999999999999999
Q ss_pred cceeeCCcccceeEeeEEecCCCCCChhhhcCCCCcEEEEEEEcC
Q psy14180 87 SEHTVDGKAYAGELHLVHWNSDKYSTFGEAAGQPDGLAVLGVLLE 131 (131)
Q Consensus 87 SEH~idG~~~~~E~HlVh~~~~~~~~~~~a~~~~~glaVl~v~~~ 131 (131)
|||+|||++|||||||||++. +|.++ ||...++++||||+||+
T Consensus 79 SEH~i~g~~y~~E~H~Vh~~~-~~~~~-~a~~~~~~laVv~v~~~ 121 (227)
T cd00326 79 SEHTIDGKRYPLELHLVHYNS-DYYSS-EAAKKPGGLAVLGVFFE 121 (227)
T ss_pred CcceeCCEeccccceEEEECC-CCCCh-hhhccCCCeEEEEEEEE
Confidence 999999999999999999998 67777 99999999999999985
No 15
>PLN02202 carbonate dehydratase
Probab=100.00 E-value=6.7e-34 Score=218.86 Aligned_cols=106 Identities=25% Similarity=0.394 Sum_probs=89.4
Q ss_pred CCCC-CCCCCCCceEeCCceeecCCCCCCCeeeeecCCCceEEEecCcEEEEEeCCCCc-eEecCCCCccEEeEEEEEee
Q psy14180 2 FPEA-SGERQSPVNVDTTKVSSDKTLEEKPLTWKYNPDKTKTITNPGYCWRVDVDGEDS-ELTGGPLHHKYRLEQFHCHW 79 (131)
Q Consensus 2 ~~~c-~G~~QSPI~I~~~~~~~~~~~~l~~l~~~Y~~~~~~~i~N~g~t~~~~~~~~~~-~i~gg~l~~~Y~l~q~HfHw 79 (131)
|+.| +|++||||||.+..+.+++. +.+|.++|... ..++.|+|+++++.+.++.. ...+| .+|+|.||||||
T Consensus 49 ~~~C~~G~~QSPIdI~~~~~~~~~~--l~~l~~~~~~~-~~~l~N~Ghtv~v~~~~~~~~~~~~g---~~Y~L~QfHFH~ 122 (284)
T PLN02202 49 FTKCAVGKLQSPIDIQRRQIFYNHK--LESIHRDYYFT-NATLVNHVCNVAMFFGEGAGDVIIDN---KNYTLLQMHWHT 122 (284)
T ss_pred hhhccCCCccCCEeecCCccccCCC--CCceeeeccCC-ceEEEECCccEEEEEcCCCCeeEECC---cEEEEEEEEecC
Confidence 5679 69999999999887666666 78899988753 57899999999999864322 33343 689999999996
Q ss_pred cCCCCCCcceeeCCcccceeEeeEEecCCCCCChhhhcCCCCcEEEEEEEcC
Q psy14180 80 GCVSNKGSEHTVDGKAYAGELHLVHWNSDKYSTFGEAAGQPDGLAVLGVLLE 131 (131)
Q Consensus 80 G~~~~~~SEH~idG~~~~~E~HlVh~~~~~~~~~~~a~~~~~glaVl~v~~~ 131 (131)
||||+|||++|||||||||++. ++++||||+||+
T Consensus 123 ------gSEH~idG~~yp~E~H~VH~~~------------~g~laVlgv~~~ 156 (284)
T PLN02202 123 ------PSEHHLHGVQYAAELHMVHQAK------------DGSFAVVASLFK 156 (284)
T ss_pred ------CcccEECCeeCCeEEEEEEEcC------------CCCEEEEEEEEe
Confidence 7999999999999999999997 789999999985
No 16
>cd03124 alpha_CA_prokaryotic_like Carbonic anhydrase alpha, prokaryotic-like subfamily. Carbonic anhydrases (CAs) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism: a nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. Most alpha CAs are monomeric enzymes. The zinc ion is complexed by three histidines. This sub-family includes bacterial carbonic anhydrase alpha, as well as plant enzymes such as tobacco nectarin III and yam dioscorin and, carbonic anhydrases from molluscs, such as nacrein, which are part of the organic matrix layer in shells. Other members of this family may be involved in maintaining pH balance, in facilitating transport of carb
Probab=100.00 E-value=1.9e-33 Score=209.14 Aligned_cols=106 Identities=41% Similarity=0.644 Sum_probs=89.1
Q ss_pred CCCCC-CCCCCCceEeCCceeecCCCCCCCeeeeecCCCceEEEecCcEEEEEeCCCCceEecCCCCccEEeEEEEEeec
Q psy14180 2 FPEAS-GERQSPVNVDTTKVSSDKTLEEKPLTWKYNPDKTKTITNPGYCWRVDVDGEDSELTGGPLHHKYRLEQFHCHWG 80 (131)
Q Consensus 2 ~~~c~-G~~QSPI~I~~~~~~~~~~~~l~~l~~~Y~~~~~~~i~N~g~t~~~~~~~~~~~i~gg~l~~~Y~l~q~HfHwG 80 (131)
|+.|. |++||||||.+..+..+ . +++|.+.|.. ..+++.|+|+++++.+.++...+..++ .+|+|.||||||
T Consensus 12 ~~~C~~G~~QSPI~I~~~~~~~~-~--~~~l~~~~~~-~~~~l~N~G~tv~~~~~~~~~~~~~~g--~~Y~l~q~HfH~- 84 (216)
T cd03124 12 FALCATGKNQSPIDITTKAVVSD-K--LPPLNYNYKP-TSATLVNNGHTIQVNFEGNGGTLTIDG--ETYQLLQFHFHS- 84 (216)
T ss_pred hhhhcCCCCCCCEeeccCceeec-C--CCCceeeccC-CceEEEECCceEEEEEcCCCCeEEECC--cEEEEEEEEecC-
Confidence 68895 99999999999776654 3 6789998875 578999999999999875332232221 789999999996
Q ss_pred CCCCCCcceeeCCcccceeEeeEEecCCCCCChhhhcCCCCcEEEEEEEcC
Q psy14180 81 CVSNKGSEHTVDGKAYAGELHLVHWNSDKYSTFGEAAGQPDGLAVLGVLLE 131 (131)
Q Consensus 81 ~~~~~~SEH~idG~~~~~E~HlVh~~~~~~~~~~~a~~~~~glaVl~v~~~ 131 (131)
||||+|||++|||||||||++. ++++||||+||+
T Consensus 85 -----gSEH~idg~~y~~ElH~Vh~~~------------~~~laVl~v~~~ 118 (216)
T cd03124 85 -----PSEHLINGKRYPLEAHLVHKSK------------DGQLAVVAVLFE 118 (216)
T ss_pred -----CcccEeccccCCceeeEEEEcC------------CCCEEEEEEEEe
Confidence 8999999999999999999997 789999999985
No 17
>PLN02179 carbonic anhydrase
Probab=100.00 E-value=1.5e-33 Score=211.77 Aligned_cols=106 Identities=33% Similarity=0.524 Sum_probs=84.4
Q ss_pred CCCC-CCCCCCCceEeCCceeecCCCCCCCeeeeecCCCceEEEecCcEEEEEeCCCCceEecCCCCccEEeEEEEEeec
Q psy14180 2 FPEA-SGERQSPVNVDTTKVSSDKTLEEKPLTWKYNPDKTKTITNPGYCWRVDVDGEDSELTGGPLHHKYRLEQFHCHWG 80 (131)
Q Consensus 2 ~~~c-~G~~QSPI~I~~~~~~~~~~~~l~~l~~~Y~~~~~~~i~N~g~t~~~~~~~~~~~i~gg~l~~~Y~l~q~HfHwG 80 (131)
|..| +|++||||||.+..+.... .++|.+.|.. ...++.|+|||+++.+.++...+..+ +.+|+|.||||||
T Consensus 57 ~~~C~~G~~QSPIdI~~~~~~~~~---~~~l~~~y~~-~~~~i~N~Ghtv~v~~~~~~~~~~i~--g~~Y~L~QfHFH~- 129 (235)
T PLN02179 57 WKVCSTGKYQSPIDLTDERVSLIH---DQALSRHYKP-APAVIQSRGHDVMVSWKGDAGKITIH--QTDYKLVQCHWHS- 129 (235)
T ss_pred hhhccCCCcCCCEEeecccccccc---CCCcccccCC-ccEEEEECCeEEEEEecCCCCeeEec--CcEEEEEEEEecC-
Confidence 4569 6999999999987543221 2467778875 35799999999999986443222222 2789999999995
Q ss_pred CCCCCCcceeeCCcccceeEeeEEecCCCCCChhhhcCCCCcEEEEEEEcC
Q psy14180 81 CVSNKGSEHTVDGKAYAGELHLVHWNSDKYSTFGEAAGQPDGLAVLGVLLE 131 (131)
Q Consensus 81 ~~~~~~SEH~idG~~~~~E~HlVh~~~~~~~~~~~a~~~~~glaVl~v~~~ 131 (131)
||||+|||++|||||||||++. .+++|||||||+
T Consensus 130 -----gSEH~InG~~yp~E~H~VH~n~------------~g~laVlgvl~~ 163 (235)
T PLN02179 130 -----PSEHTINGTSYDLELHMVHTSA------------SGKTAVVGVLYK 163 (235)
T ss_pred -----CcceEecccccCeeEEEEEEcC------------CCCeEEEEEEEe
Confidence 8999999999999999999997 678999999985
No 18
>COG3338 Cah Carbonic anhydrase [Inorganic ion transport and metabolism]
Probab=99.97 E-value=2.2e-31 Score=195.92 Aligned_cols=105 Identities=37% Similarity=0.599 Sum_probs=90.7
Q ss_pred CCCC-CCCCCCCceEeCCceeecCCCCCCCeeeeecCCCceEEEecCcEEEEEeCCCCceEecCCCCccEEeEEEEEeec
Q psy14180 2 FPEA-SGERQSPVNVDTTKVSSDKTLEEKPLTWKYNPDKTKTITNPGYCWRVDVDGEDSELTGGPLHHKYRLEQFHCHWG 80 (131)
Q Consensus 2 ~~~c-~G~~QSPI~I~~~~~~~~~~~~l~~l~~~Y~~~~~~~i~N~g~t~~~~~~~~~~~i~gg~l~~~Y~l~q~HfHwG 80 (131)
|..| .|++||||||....... + .++|.++|.+ ...+|.|+|||+++.+.++.+.+++. +..|.|.|||||
T Consensus 46 f~~C~~Gk~QSPIdI~~~~~~~--~--~~~l~~~Y~~-s~~~i~nnghTiqv~~~~~~n~l~~~--gk~y~L~qfHFH-- 116 (250)
T COG3338 46 FEACAEGKNQSPIDIEHAVDVQ--D--KPPLQLNYQP-SAVTIKNNGHTIQVNFEPGSNHLRYD--GKTYQLVQFHFH-- 116 (250)
T ss_pred hhHhhccccCCCccHHHheecc--c--ccchheeecc-CceEEEecCcEEEEeccCCCcceeec--CcEEEEEEEEec--
Confidence 4579 89999999998764332 3 5789999987 57999999999999998775466654 378999999999
Q ss_pred CCCCCCcceeeCCcccceeEeeEEecCCCCCChhhhcCCCCcEEEEEEEcC
Q psy14180 81 CVSNKGSEHTVDGKAYAGELHLVHWNSDKYSTFGEAAGQPDGLAVLGVLLE 131 (131)
Q Consensus 81 ~~~~~~SEH~idG~~~~~E~HlVh~~~~~~~~~~~a~~~~~glaVl~v~~~ 131 (131)
.||||.|||+.||||.||||.+. ++.|||+|+|++
T Consensus 117 ----~PsEhlv~Gk~~pmEaHFVHkd~------------~g~L~Vl~v~~~ 151 (250)
T COG3338 117 ----APSEHLVDGKSFPMEAHFVHKDA------------KGTLAVLAVLLQ 151 (250)
T ss_pred ----CchHHhhccccccceeeeeecCC------------CCCEEEEEEeee
Confidence 99999999999999999999998 788999999974
No 19
>PF09211 DUF1958: Domain of unknown function (DUF1958); InterPro: IPR015294 Penicillin-binding proteins are beta-lactam antibiotic-sensitive bacterial enzymes required for the growth and maintenance of the peptidoglycan layer of the bacterial cell wall that protects the cell from osmotic stress. Penicillin-binding protein 4 (PBP4) functions as a transpeptidase, and belongs to MEROPS peptidase family S11 (clan SE). PBP4 acts co-operatively with PBP2 in staphylococcal cell wall biosynthesis and susceptibility to antimicrobial agents []. This entry represents the C-terminal domain PBP4.; PDB: 1TVF_A 3HUN_A 3HUM_B.
Probab=53.06 E-value=5.6 Score=24.20 Aligned_cols=16 Identities=44% Similarity=0.634 Sum_probs=12.2
Q ss_pred CcceeeCCcccceeEe
Q psy14180 86 GSEHTVDGKAYAGELH 101 (131)
Q Consensus 86 ~SEH~idG~~~~~E~H 101 (131)
-.||+|||+.|..+-=
T Consensus 7 kG~h~IdGk~y~v~kD 22 (65)
T PF09211_consen 7 KGEHTIDGKKYYVKKD 22 (65)
T ss_dssp SEEEEETTEEEEESS-
T ss_pred CccEEECCEEEEecCC
Confidence 4599999999987633
No 20
>PF00976 ACTH_domain: Corticotropin ACTH domain; InterPro: IPR013531 Pro-opiomelanocortin is present in high levels in the pituitary and is processed into 3 major peptide families: adrenocorticotrophin (ACTH); alpha-, beta- and gamma-melanocyte- stimulating hormones (MSH); and beta-endorphin []. ACTH regulates the synthesis and release of glucocorticoids and, to some extent, aldosterone in the adrenal cortex. It is synthesised and released in response to corticotrophin-releasing factor at times of stress (i.e. heat, cold, infection, etc.), its release leading to increased metabolism. The action of MSH in man is poorly understood, but it may be involved in temperature regulation []. Full activity of ACTH resides in the first 20 N-terminal amino acids, the first 13 of which are identical to alpha-MSH [, ]. The function of this region is not known, though it is found near the centre of these proteins.
Probab=50.16 E-value=7.5 Score=21.00 Aligned_cols=7 Identities=43% Similarity=1.047 Sum_probs=5.9
Q ss_pred EEeecCC
Q psy14180 76 HCHWGCV 82 (131)
Q Consensus 76 HfHwG~~ 82 (131)
||.||+.
T Consensus 6 hfrwgkp 12 (39)
T PF00976_consen 6 HFRWGKP 12 (39)
T ss_pred ceeccCC
Confidence 8889975
No 21
>PF07385 DUF1498: Protein of unknown function (DUF1498); InterPro: IPR010864 This family consists of several hypothetical bacterial proteins of around 225 residues in length. The function of this family is unknown.; PDB: 3MPB_B 3KMH_A.
Probab=27.36 E-value=1.1e+02 Score=23.14 Aligned_cols=32 Identities=19% Similarity=0.353 Sum_probs=21.4
Q ss_pred EeEEEEEeecCCCCCCcceeeCCcccceeEeeEEecC
Q psy14180 71 RLEQFHCHWGCVSNKGSEHTVDGKAYAGELHLVHWNS 107 (131)
Q Consensus 71 ~l~q~HfHwG~~~~~~SEH~idG~~~~~E~HlVh~~~ 107 (131)
+..-+|||| .-.|-.||.---.+.+.+.....
T Consensus 98 Q~tP~H~H~-----~K~EDIINRGGG~L~i~l~~s~~ 129 (225)
T PF07385_consen 98 QVTPMHFHW-----KKMEDIINRGGGNLVIELYNSDP 129 (225)
T ss_dssp -EEEEEEES-----S--EEEEEEEES-EEEEEEEB--
T ss_pred CcCCcccCc-----chhhheeecCCceEEEEEEeccC
Confidence 678899999 66788898776777788877664
No 22
>PF08942 DUF1919: Domain of unknown function (DUF1919); InterPro: IPR015037 This protein has no known function. It is found in various hypothetical and putative bacterial proteins. ; PDB: 2G6T_B.
Probab=23.51 E-value=36 Score=25.32 Aligned_cols=17 Identities=41% Similarity=0.630 Sum_probs=11.9
Q ss_pred cceeEeeEEecCCCCCChhhhc
Q psy14180 96 YAGELHLVHWNSDKYSTFGEAA 117 (131)
Q Consensus 96 ~~~E~HlVh~~~~~~~~~~~a~ 117 (131)
-+.|+|++|++. +.||.
T Consensus 93 ~dIeihF~HY~s-----~~eA~ 109 (201)
T PF08942_consen 93 GDIEIHFMHYKS-----FEEAK 109 (201)
T ss_dssp C-EEEEESS-SS-----HHHHH
T ss_pred CCEEEEEEecCC-----HHHHH
Confidence 567999999985 67774
No 23
>COG3402 Uncharacterized conserved protein [Function unknown]
Probab=23.17 E-value=43 Score=23.96 Aligned_cols=29 Identities=28% Similarity=0.478 Sum_probs=23.8
Q ss_pred ecCCCCccEEeEEEEEeecCCCCCCcceeeCCcc
Q psy14180 62 TGGPLHHKYRLEQFHCHWGCVSNKGSEHTVDGKA 95 (131)
Q Consensus 62 ~gg~l~~~Y~l~q~HfHwG~~~~~~SEH~idG~~ 95 (131)
.-|||..+|.|.++-++- .+|-|+|.+-.
T Consensus 111 ~~GPL~R~~~La~vti~T-----Ass~~~IeaL~ 139 (161)
T COG3402 111 EQGPLLRRYGLATVTITT-----ASSDHTIEALD 139 (161)
T ss_pred ccChHHHHhCcceEEEEe-----ccccceecccC
Confidence 458999999999999994 67788887653
No 24
>PF06255 DUF1020: Protein of unknown function (DUF1020); InterPro: IPR008106 The pathogenic neisseriae are a small group of virulent bacteria that initiate infection at the human host mucosal membranes []. They are Gram-negative cocci and usually exist in pairs. Neisseria gonorrhoeae is passed through sexual transmission and can cause renal failure in extreme cases. The more extreme Neisseria meningitidis is a usually commensal nasopharynx microbe that causes meningococcemia and acute bacterial meningitis, especially in young children and teenagers []. There are several serogroups, of which types A, B and C are the most virulent. Despite recent advances in vaccinology, this pathogen is highly important to research and still poorly understood []. N. meningitidis has many virulence factors, its major determinant being a antiphagocytic polysaccharide capsule that allows the bacterium to evade the host immune response []. Vaccines based on this polysaccharide have proven effective against serogroups A and C meningococci, but serogroup Bstill does not possess an efficient vaccine, and causes the most severe form of meningitis []. It is believed that a conjugate protein vaccine derived from published neisserial genome sequences, rather than one based on polysaccharide, will be the best way of eradicating this disease []. The focus on novel vaccine targets for N. meningitidis has shifted to the adhesins the bacterium secretes to colonise host mucosal epithelia before a serious infection takes hold []. Interaction of these adhesion moleculeswith their cognate host receptors allows bacterial entry to the epithelium,intracellular transport across the host cell, and exit into the bloodstreamon the other side []. Following publication of the complete genome sequence of an N. meningitidis serogroup B strain [], several new adhesins have been identified, including one identical to MafB from N. gonorrhoreae.
Probab=21.83 E-value=87 Score=24.75 Aligned_cols=43 Identities=23% Similarity=0.435 Sum_probs=22.8
Q ss_pred EEEecCcEEEEEeCCCCc---eEecCCCCccEEeEEEEEeecCCCCCCcceee
Q psy14180 42 TITNPGYCWRVDVDGEDS---ELTGGPLHHKYRLEQFHCHWGCVSNKGSEHTV 91 (131)
Q Consensus 42 ~i~N~g~t~~~~~~~~~~---~i~gg~l~~~Y~l~q~HfHwG~~~~~~SEH~i 91 (131)
.+.+.||.+.--|+.... .-..|.+..-|.+.++| | .|+||--
T Consensus 65 rFSgHGhEvHsPFdnhaS~S~s~~~g~v~dGftvyrl~--w-----~G~EhHP 110 (327)
T PF06255_consen 65 RFSGHGHEVHSPFDNHASKSDSDEAGSVDDGFTVYRLH--W-----TGSEHHP 110 (327)
T ss_pred EecCCCccccCCcccccccchhhhcCCCcCCeEEEEEe--c-----cccccCc
Confidence 344555555544544321 22234444457777776 6 6898643
Done!