RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14180
(131 letters)
>1keq_A F65A/Y131C-MI carbonic anhydrase V; proton transfer, engineered
residue, lyase; HET: 4MZ; 1.88A {Mus musculus} SCOP:
b.74.1.1 PDB: 1dmx_A 1dmy_A* 1urt_A
Length = 248
Score = 179 bits (456), Expect = 3e-58
Identities = 60/129 (46%), Positives = 78/129 (60%), Gaps = 4/129 (3%)
Query: 5 ASGERQSPVNVDTTKVSSDKTLEEKPLTWKYNPDKTKTITNPGYCWRVDVDG--EDSELT 62
A+G RQSP+N+ D L PL Y+ + + N GY ++V+ D EDS ++
Sbjct: 2 ATGTRQSPINIQWKDSVYDPQL--APLRVSYDAASCRYLWNTGYAFQVEFDDSCEDSGIS 59
Query: 63 GGPLHHKYRLEQFHCHWGCVSNKGSEHTVDGKAYAGELHLVHWNSDKYSTFGEAAGQPDG 122
GGPL + YRL+QFH HWG GSEH VDG Y ELHLVHWNS KY +A+ +G
Sbjct: 60 GGPLGNHYRLKQFHFHWGATDEWGSEHAVDGHTYPAELHLVHWNSTKYENCKKASVGENG 119
Query: 123 LAVLGVLLE 131
LAV+GV L+
Sbjct: 120 LAVIGVFLK 128
>2foy_A Carbonic anhydrase 1; lyase, zinc, inhibitor, copper; HET: B30;
1.55A {Homo sapiens} SCOP: b.74.1.1 PDB: 1bzm_A* 1czm_A*
1azm_A 1hug_A 1huh_A 1hcb_A* 2fw4_A* 2nmx_A* 2nn1_A*
2nn7_A* 3lxe_A* 1jv0_A 1j9w_A 1crm_A 2cab_A 2it4_A
Length = 260
Score = 171 bits (434), Expect = 1e-54
Identities = 64/133 (48%), Positives = 87/133 (65%), Gaps = 4/133 (3%)
Query: 1 MFPEASGERQSPVNVDTTKVSSDKTLEEKPLTWKYNPDKTKTITNPGYCWRVDVDGEDSE 60
++P A+G QSPV++ T++ D +L KP++ YNP K I N G+ + V+ + D+
Sbjct: 19 LYPIANGNNQSPVDIKTSETKHDTSL--KPISVSYNPATAKEIINVGHSFHVNFEDNDNR 76
Query: 61 --LTGGPLHHKYRLEQFHCHWGCVSNKGSEHTVDGKAYAGELHLVHWNSDKYSTFGEAAG 118
L GGP YRL QFH HWG + GSEHTVDG Y+ ELH+ HWNS KYS+ EAA
Sbjct: 77 SVLKGGPFSDSYRLFQFHFHWGSTNEHGSEHTVDGVKYSAELHVAHWNSAKYSSLAEAAS 136
Query: 119 QPDGLAVLGVLLE 131
+ DGLAV+GVL++
Sbjct: 137 KADGLAVIGVLMK 149
>4e9o_X D8L antigen, IMV membrane protein; CAH alpha fold, VP7 motif, beta
sheet, cell surface chondroi binding, viral entry,
chondroitin sulfate; 1.42A {Vaccinia virus} PDB: 4etq_X
Length = 269
Score = 169 bits (431), Expect = 4e-54
Identities = 47/125 (37%), Positives = 71/125 (56%), Gaps = 4/125 (3%)
Query: 7 GERQSPVNVDTTKVSSDKTLEEKPLTWKYNPDKTKTITNPGYCWRVDVDGEDSELTGGPL 66
++ SP+N++T K S+ L KPL YN K TI N G R++ ++GG L
Sbjct: 2 PQQLSPINIETKKAISNARL--KPLDIHYNESKPTTIQNTGKLVRINFK--GGYISGGFL 57
Query: 67 HHKYRLEQFHCHWGCVSNKGSEHTVDGKAYAGELHLVHWNSDKYSTFGEAAGQPDGLAVL 126
++Y L H +WG + GS H +D Y+GE++LVHWN KYS++ EA DGL ++
Sbjct: 58 PNEYVLSSLHIYWGKEDDYGSNHLIDVYKYSGEINLVHWNKKKYSSYEEAKKHDDGLIII 117
Query: 127 GVLLE 131
+ L+
Sbjct: 118 SIFLQ 122
>3d0n_A Carbonic anhydrase 13; lyase, metal-binding, metal binding PROT;
HET: GOL; 1.55A {Homo sapiens} PDB: 3czv_A* 3da2_A*
Length = 264
Score = 169 bits (430), Expect = 4e-54
Identities = 71/133 (53%), Positives = 89/133 (66%), Gaps = 4/133 (3%)
Query: 1 MFPEASGERQSPVNVDTTKVSSDKTLEEKPLTWKYNPDKTKTITNPGYCWRVDVDG--ED 58
FP A G++QSP+ + T +V D +L +PL+ KY+P K I+N G+ + VD D
Sbjct: 22 FFPIADGDQQSPIEIKTKEVKYDSSL--RPLSIKYDPSSAKIISNSGHSFNVDFDDTENK 79
Query: 59 SELTGGPLHHKYRLEQFHCHWGCVSNKGSEHTVDGKAYAGELHLVHWNSDKYSTFGEAAG 118
S L GGPL YRL Q H HWG + GSEH VDG +YA ELH+VHWNSDKY +F EAA
Sbjct: 80 SVLRGGPLTGSYRLRQVHLHWGSADDHGSEHIVDGVSYAAELHVVHWNSDKYPSFVEAAH 139
Query: 119 QPDGLAVLGVLLE 131
+PDGLAVLGV L+
Sbjct: 140 EPDGLAVLGVFLQ 152
>3ml5_A Carbonic anhydrase 7; protein-inhibitor complex, lyase; HET: AZM;
2.05A {Homo sapiens} PDB: 3mdz_A*
Length = 269
Score = 169 bits (429), Expect = 7e-54
Identities = 69/133 (51%), Positives = 91/133 (68%), Gaps = 4/133 (3%)
Query: 1 MFPEASGERQSPVNVDTTKVSSDKTLEEKPLTWKYNPDKTKTITNPGYCWRVDVDGEDSE 60
++P A G+RQSP+N+ +++ +L +PL Y + +ITN G+ +VD + D
Sbjct: 26 LYPIAQGDRQSPINIISSQAVYSPSL--QPLELSYEACMSLSITNNGHSVQVDFNDSDDR 83
Query: 61 --LTGGPLHHKYRLEQFHCHWGCVSNKGSEHTVDGKAYAGELHLVHWNSDKYSTFGEAAG 118
+TGGPL YRL+QFH HWG + GSEHTVDGK++ ELHLVHWN+ KYSTFGEAA
Sbjct: 84 TVVTGGPLEGPYRLKQFHFHWGKKHDVGSEHTVDGKSFPSELHLVHWNAKKYSTFGEAAS 143
Query: 119 QPDGLAVLGVLLE 131
PDGLAV+GV LE
Sbjct: 144 APDGLAVVGVFLE 156
>3k34_A Carbonic anhydrase 2; atomic resolution, sulfonamide inhibitor
mutation, lyase, metal-binding, lyase-lyase inhibitor
compl; HET: HGB SUA; 0.90A {Homo sapiens} PDB: 1ca3_A*
1cnw_A* 1cny_A* 1eou_A* 1g6v_A 1hca_A 1kwq_A* 1kwr_A*
1t9n_A 1tb0_X 1tbt_X 1te3_X 1teq_X 1teu_X 1cnx_A 1xev_A
1xeg_A 2ax2_A* 2eu3_A* 2ez7_A* ...
Length = 260
Score = 167 bits (424), Expect = 3e-53
Identities = 70/133 (52%), Positives = 87/133 (65%), Gaps = 5/133 (3%)
Query: 1 MFPEASGERQSPVNVDTTKVSSDKTLEEKPLTWKYNPDKTKTITNPGYCWRVDVDG--ED 58
FP A GERQSPV++DT D +L KPL+ Y+ + I N G+ + V+ D +
Sbjct: 19 DFPIAKGERQSPVDIDTHTAKYDPSL--KPLSVSYDQATSLRILNNGHAFNVEFDDSQDK 76
Query: 59 SELTGGPLHHKYRLEQFHCHWGCVSNKGSEHTVDGKAYAGELHLVHWNSDKYSTFGEAAG 118
+ L GGPL YRL QFH HWG + +GSEHTVD K YA ELHLVHWN+ KY FG+A
Sbjct: 77 AVLKGGPLDGTYRLIQFHFHWGSLDGQGSEHTVDKKKYAAELHLVHWNT-KYGDFGKAVQ 135
Query: 119 QPDGLAVLGVLLE 131
QPDGLAVLG+ L+
Sbjct: 136 QPDGLAVLGIFLK 148
>2w2j_A Carbonic anhydrase-related protein; lyase, metal-binding; 1.60A
{Homo sapiens}
Length = 291
Score = 168 bits (426), Expect = 3e-53
Identities = 50/133 (37%), Positives = 84/133 (63%), Gaps = 3/133 (2%)
Query: 1 MFPEASGERQSPVNVDTTKVSSDKTLEEKPLTWKYNPDKTKTITNPGYCWRVDVDGEDSE 60
+FP+A+GE QSP+N+++ + D +L + L+ Y + +TN G+ +V + S
Sbjct: 41 VFPDANGEYQSPINLNSREARYDPSLLDVRLSPNYVVCRDCEVTNDGHTIQVILKS-KSV 99
Query: 61 LTGGPLH--HKYRLEQFHCHWGCVSNKGSEHTVDGKAYAGELHLVHWNSDKYSTFGEAAG 118
L+GGPL H++ L + HWG + +GSEHTV+ KA+ ELHL+HWNS + + EA G
Sbjct: 100 LSGGPLPQGHEFELYEVRFHWGRENQRGSEHTVNFKAFPMELHLIHWNSTLFGSIDEAVG 159
Query: 119 QPDGLAVLGVLLE 131
+P G+A++ + ++
Sbjct: 160 KPHGIAIIALFVQ 172
>2hfx_A Carbonic anhydrase 3; proton shuttle, HCA III, proton transfer,
lyase; 1.70A {Homo sapiens} PDB: 3uyq_A 2hfw_A 1z93_A
2hfy_A 3uyn_A 1z97_A 1flj_A*
Length = 260
Score = 166 bits (423), Expect = 4e-53
Identities = 67/133 (50%), Positives = 83/133 (62%), Gaps = 5/133 (3%)
Query: 1 MFPEASGERQSPVNVDTTKVSSDKTLEEKPLTWKYNPDKTKTITNPGYCWRVDVDG--ED 58
+FP A GE QSP+ + T + D +L +P + Y+ KTI N G+ RV D +
Sbjct: 19 LFPNAKGENQSPIELHTKDIRHDPSL--QPWSVSYDGGSAKTILNNGHTCRVVFDDTYDR 76
Query: 59 SELTGGPLHHKYRLEQFHCHWGCVSNKGSEHTVDGKAYAGELHLVHWNSDKYSTFGEAAG 118
S L GGPL YRL QFH HWG + GSEHTVDG YA ELHLVHWN KY+TF EA
Sbjct: 77 SMLRGGPLPGPYRLRQFHLHWGSSDDHGSEHTVDGVKYAAELHLVHWNP-KYNTFKEALK 135
Query: 119 QPDGLAVLGVLLE 131
Q DG+AV+G+ L+
Sbjct: 136 QRDGIAVIGIFLK 148
>1rj5_A Carbonic anhydrase XIV; beta-sheet, alpha-helix, zinc enzyme,
lyase; HET: NAG BMA; 2.81A {Mus musculus} SCOP: b.74.1.1
PDB: 1rj6_A*
Length = 261
Score = 162 bits (411), Expect = 3e-51
Identities = 51/133 (38%), Positives = 74/133 (55%), Gaps = 5/133 (3%)
Query: 1 MFPEASGERQSPVNVDTTKVSSDKTLEE-KPLTWKYNPDKTKTITNPGYCWRVDVDGEDS 59
+PE G+ QSP+N+ T V D L +P + + + N G+ ++ +
Sbjct: 19 SYPECGGDAQSPINIQTDSVIFDPDLPAVQPHGYDQLGTEPLDLHNNGHTVQLSLPPT-- 76
Query: 60 ELTGGPLHHKYRLEQFHCHWGCV-SNKGSEHTVDGKAYAGELHLVHWNSDKYSTFGEAAG 118
L G L KY Q H HWG S +GSEH ++ +A A ELH+VH++S YS+ EAA
Sbjct: 77 -LHLGGLPRKYTAAQLHLHWGQRGSLEGSEHHINSEATAAELHVVHYDSQSYSSLSEAAQ 135
Query: 119 QPDGLAVLGVLLE 131
+P GLAVLG+L+E
Sbjct: 136 KPQGLAVLGILIE 148
>3iai_A Carbonic anhydrase 9; transmembrane proteins, cell membrane,
projection, disulfide bond, glycoprotein, lyase,
membrane, binding, nucleus; HET: AZM NAG BMA MAN; 2.20A
{Homo sapiens}
Length = 257
Score = 160 bits (407), Expect = 1e-50
Identities = 44/134 (32%), Positives = 67/134 (50%), Gaps = 8/134 (5%)
Query: 1 MFPEASGERQSPVNVDTTKVSSDKTLEEKPLTW---KYNPDKTKTITNPGYCWRVDVDGE 57
+ P +G QSPV++ + L +PL + P + N G+ ++ +
Sbjct: 18 VSPACAGRFQSPVDIRPQLAAFSPAL--RPLELLGFQLPPLPELRLRNNGHSVQLTLPP- 74
Query: 58 DSELTGGPLHHKYRLEQFHCHWGCVSNKGSEHTVDGKAYAGELHLVHWNSDKYSTFGEAA 117
E+ GP +YR Q H HWG GSEHTV+G + E+H+VH ++ ++ EA
Sbjct: 75 GLEMALGPGR-EYRALQLHLHWGAAGRPGSEHTVEGHRFPAEIHVVHLST-AFARVDEAL 132
Query: 118 GQPDGLAVLGVLLE 131
G+P GLAVL LE
Sbjct: 133 GRPGGLAVLAAFLE 146
>3fw3_A Carbonic anhydrase 4; structure-based drug design. small molecule
complex. CO-CRYS membrane, disease mutation,
glycoprotein, GPI-anchor; HET: ETS GLC; 1.72A {Homo
sapiens} PDB: 1znc_A* 3f7b_A* 3f7u_A*
Length = 266
Score = 158 bits (402), Expect = 8e-50
Identities = 44/129 (34%), Positives = 69/129 (53%), Gaps = 5/129 (3%)
Query: 5 ASGERQSPVNVDTTKVSSDKTLEEKPLTWK-YNPDKTKTITNPGYCWRVDVDGEDSELTG 63
+RQSP+N+ TTK DK L + Y+ +T T+ N G+ + ++ + ++G
Sbjct: 28 CQKDRQSPINIVTTKAKVDKKL--GRFFFSGYDKKQTWTVQNNGHSVMMLLEN-KASISG 84
Query: 64 GPLHHKYRLEQFHCHWGCVSNKGSEHTVDGKAYAGELHLVHWNSDK-YSTFGEAAGQPDG 122
G L Y+ +Q H HW + KGSEH++DG+ +A E+H+VH EA D
Sbjct: 85 GGLPAPYQAKQLHLHWSDLPYKGSEHSLDGEHFAMEMHIVHEKEKGTSRNVKEAQDPEDE 144
Query: 123 LAVLGVLLE 131
+AVL L+E
Sbjct: 145 IAVLAFLVE 153
>1jd0_A Carbonic anhydrase XII; extracellular domain, bitopic protein, type
I membrane protein, lyase; HET: AZM; 1.50A {Homo
sapiens} SCOP: b.74.1.1 PDB: 1jcz_A*
Length = 263
Score = 156 bits (397), Expect = 4e-49
Identities = 46/135 (34%), Positives = 74/135 (54%), Gaps = 9/135 (6%)
Query: 1 MFPEASGERQSPVNVDTTKVSSDKTLEEKPLTWKY---NPDKTKTITNPGYCWRVDVDGE 57
+P G QSP+++ + + D +L PL ++ + +K +TN G+ ++++ +
Sbjct: 18 KYPSCGGLLQSPIDLHSDILQYDASL--TPLEFQGYNLSANKQFLLTNNGHSVKLNLPSD 75
Query: 58 DSELTGGPLHHKYRLEQFHCHWG-CVSNKGSEHTVDGKAYAGELHLVHWNSDKYSTFGEA 116
+ L +Y Q H HWG GSEHTV G+ +A ELH+VH+NSD Y A
Sbjct: 76 ---MHIQGLQSRYSATQLHLHWGNPNDPHGSEHTVSGQHFAAELHIVHYNSDLYPDASTA 132
Query: 117 AGQPDGLAVLGVLLE 131
+ + +GLAVL VL+E
Sbjct: 133 SNKSEGLAVLAVLIE 147
>3jxg_A Receptor-type tyrosine-protein phosphatase gamma; Ca-like domain,
glycoprotein, hydrolase, membrane, phosphoprotein,
transmembrane, cell adhesion; 1.70A {Mus musculus} PDB:
3kld_B* 3jxh_C
Length = 269
Score = 156 bits (397), Expect = 4e-49
Identities = 26/133 (19%), Positives = 55/133 (41%), Gaps = 3/133 (2%)
Query: 1 MFPEASGERQSPVNVDTTKVSSDKTLEEKPLT-WKYNPDKTKTITNPGYCWRVDVDGEDS 59
G QSP+++ +E L + + N G + + D
Sbjct: 23 SSVSCGGSHQSPIDILDHHARVGDEYQELQLDGFDNESSNKTWMKNTGKTVAILLKD-DY 81
Query: 60 ELTGGPLHHKYRLEQFHCHWG-CVSNKGSEHTVDGKAYAGELHLVHWNSDKYSTFGEAAG 118
++G L +++ E+ HWG + GSEH+V+G+ + E+ + +N D + +F A
Sbjct: 82 FVSGAGLPGRFKAEKVEFHWGHSNGSAGSEHSVNGRRFPVEMQIFFYNPDDFDSFQTAIS 141
Query: 119 QPDGLAVLGVLLE 131
+ + + + +
Sbjct: 142 ENRIIGAMAIFFQ 154
>3jxf_A Receptor-type tyrosine-protein phosphatase zeta; Ca-like domain,
alternative splicing, glycoprotein, hydrolase, membrane,
polymorphism; 2.00A {Homo sapiens} PDB: 3s97_A*
Length = 272
Score = 155 bits (394), Expect = 2e-48
Identities = 34/136 (25%), Positives = 67/136 (49%), Gaps = 8/136 (5%)
Query: 1 MFPEASGERQSPVNVDTTKVSSDKTLEEKPLTWKY---NPDKTKTITNPGYCWRVDVDGE 57
+P + +QSP+N+D + L K L ++ + I N G +++
Sbjct: 22 KYPTCNSPKQSPINIDEDLTQVNVNL--KKLKFQGWDKTSLENTFIHNTGKTVEINLTN- 78
Query: 58 DSELTGGPLHHKYRLEQFHCHWGC--VSNKGSEHTVDGKAYAGELHLVHWNSDKYSTFGE 115
D ++GG ++ + HWG +S+ GSEH+++G+ + E+ + +++D++S+F E
Sbjct: 79 DYRVSGGVSEMVFKASKITFHWGKCNMSSDGSEHSLEGQKFPLEMQIYCFDADRFSSFEE 138
Query: 116 AAGQPDGLAVLGVLLE 131
A L L +L E
Sbjct: 139 AVKGKGKLRALSILFE 154
>2znc_A Carbonic anhydrase IV; lyase, zinc, murine, membrane; 2.80A {Mus
musculus} SCOP: b.74.1.1 PDB: 3znc_A*
Length = 258
Score = 154 bits (391), Expect = 3e-48
Identities = 35/128 (27%), Positives = 58/128 (45%), Gaps = 9/128 (7%)
Query: 5 ASGERQSPVNVDTTKVSSDKTLEEKPLTW-KYNPDKTKTITNPGYCWRVDVDGEDSELTG 63
+QSP+N+ T + + L P Y+ + I N + + + G + + G
Sbjct: 24 CKENQQSPINIVTARTKVNPRL--TPFILVGYDQKQQWPIKNNQHTVEMTLGG-GACIIG 80
Query: 64 GPLHHKYRLEQFHCHWGCVSNKGSEHTVDGKAYAGELHLVHWNSDKYSTFGEAAGQPDGL 123
G L +Y Q H HW ++ GSEH++DG+ +A E+H+VH D
Sbjct: 81 GDLPARYEAVQLHLHWSNGNDNGSEHSIDGRHFAMEMHIVHKKLTS-----SKEDSKDKF 135
Query: 124 AVLGVLLE 131
AVL ++E
Sbjct: 136 AVLAFMIE 143
>3fe4_A Carbonic anhydrase 6; secretion, metal binding, structural GEN
structural genomics consortium, SGC, glycoprotein,
lyase, M binding, secreted; 1.90A {Homo sapiens}
Length = 278
Score = 151 bits (382), Expect = 1e-46
Identities = 47/134 (35%), Positives = 71/134 (52%), Gaps = 7/134 (5%)
Query: 1 MFPEASGERQSPVNVDTTKVSSDKTLEEKPLTWKYNPDKTKTITNPGYCWRVDV-DGEDS 59
+P G+RQSP+N+ TKV + +L+ +T + N G+ ++ +
Sbjct: 19 HYPACGGQRQSPINLQRTKVRYNPSLKGLNMTGYETQAGEFPMVNNGHTVQISLPSTMRM 78
Query: 60 ELTGGPLHHKYRLEQFHCHWGCVSN--KGSEHTVDGKAYAGELHLVHWNSDKYSTFGEAA 117
+ G + Y +Q H HWG S+ GSEHTVDG + E+H+VH+NS KY ++ A
Sbjct: 79 TVADGTV---YIAQQMHFHWGGASSEISGSEHTVDGIRHVIEIHIVHYNS-KYKSYDIAQ 134
Query: 118 GQPDGLAVLGVLLE 131
PDGLAVL +E
Sbjct: 135 DAPDGLAVLAAFVE 148
>1y7w_A Halotolerant alpha-type carbonic anhydrase (DCA I; haltolerant
protein, algal Ca anhydrase, salt tolerant protein, zinc
enzyme; 1.86A {Dunaliella salina}
Length = 291
Score = 141 bits (357), Expect = 7e-43
Identities = 34/143 (23%), Positives = 53/143 (37%), Gaps = 24/143 (16%)
Query: 2 FPEASGERQSPVNVDTTKVSSDKTLEE------KPLTWKYNPDKTKTITNPGY----CWR 51
+P SG QSP++++T ++ + L T+TN +
Sbjct: 43 YPACSGSNQSPIDINTNQLMEPSSRSGTSAVSLNGLNVDGAQADGITLTNAKVDLEQGMK 102
Query: 52 VDVD---GEDSELTGGPLHHKYRLEQFHCHWGCVSNKGSEHTVDGKAYAGELHLVHWNSD 108
V D + G + QFH H SEHT++G Y ELH+V D
Sbjct: 103 VTFDQPAANLPTIEIGGTTKSFVPIQFHFHHF-----LSEHTINGIHYPLELHIVMQEQD 157
Query: 109 KYSTFGEAAGQPDGLAVLGVLLE 131
A LAV+G++ +
Sbjct: 158 ------PADVATAQLAVIGIMYK 174
>3q31_A Carbonic anhydrase; glysosy secreted, dimeric, lyase; HET: NAG;
2.70A {Aspergillus oryzae}
Length = 244
Score = 119 bits (301), Expect = 6e-35
Identities = 31/130 (23%), Positives = 47/130 (36%), Gaps = 31/130 (23%)
Query: 5 ASGERQSPVNVDTTKVSSDKTLEEKPLTWKYNPDKTKTITNPGYCWRVDVDGEDSELTGG 64
A G+ QSP+ +D+ + + L + N G+ +V LT G
Sbjct: 33 AKGKHQSPIVIDSAAIDYAAS---GSLKLDLPLADGSKLENLGFGLQV-------TLTNG 82
Query: 65 PL---HHKYRLEQFHCHWGCVSNKGSEHTVDGKAYAGELHLVHWNSDKYSTFGEAAGQPD 121
L Y L QFH H SEH V+ + + E+H V + K
Sbjct: 83 SLTANSKTYTLAQFHFHTP------SEHHVNEEHFPMEVHFVFQTAAK------------ 124
Query: 122 GLAVLGVLLE 131
AV+G +
Sbjct: 125 ETAVVGFFFQ 134
>1kop_A Carbonic anhydrase; lyase, structural trimming; 1.90A {Neisseria
gonorrhoeae} SCOP: b.74.1.1 PDB: 1koq_A
Length = 223
Score = 118 bits (298), Expect = 1e-34
Identities = 33/127 (25%), Positives = 50/127 (39%), Gaps = 26/127 (20%)
Query: 5 ASGERQSPVNVDTTKVSSDKTLEEKPLTWKYNPDKTKTITNPGYCWRVDVDGEDSELTGG 64
++G+ QSPVN+ T + Y P + N G+ +V+ + LT
Sbjct: 26 STGKNQSPVNITETVSGKLP-----AIKVNYKPSMV-DVENNGHTIQVNYPEGGNTLTVN 79
Query: 65 PLHHKYRLEQFHCHWGCVSNKGSEHTVDGKAYAGELHLVHWNSDKYSTFGEAAGQPDGLA 124
Y L+QFH H SE+ + G+ + E H VH + +K
Sbjct: 80 G--RTYTLKQFHFHVP------SENQIKGRTFPMEAHFVHLDENK------------QPL 119
Query: 125 VLGVLLE 131
VL VL E
Sbjct: 120 VLAVLYE 126
>3b1b_A Carbonic anhydrase 1; N-glycosylation, zinc-finger, lyase; HET:
NAG; 1.88A {Chlamydomonas reinhardtii}
Length = 377
Score = 117 bits (293), Expect = 9e-33
Identities = 33/160 (20%), Positives = 53/160 (33%), Gaps = 41/160 (25%)
Query: 2 FPEASGERQSPVNVDTTKVSSDKTLE---EKPLTWKY----NPDKTKTITNPGYCWRVDV 54
+ +G +QSP+NV +V K + W Y + + + N G+ +V
Sbjct: 59 WVCKTGRKQSPINVPQYQVLDGKGSKIANGLQTQWSYPDLMSNGTSVQVINNGHTIQVQW 118
Query: 55 DGEDSE-----------------------LTGGPLHHKYRLEQFHCHWGCVSNKGSEHTV 91
+ QFH H SEH +
Sbjct: 119 TYNYAGHATIAIPAMHNQTNRIVDVLEMRPNDAADRVTAVPTQFHFHS------TSEHLL 172
Query: 92 DGKAYAGELHLVHWNSDKYSTFGEAAGQPDGLAVLGVLLE 131
GK Y ELH+VH ++K A + +V G+L +
Sbjct: 173 AGKIYPLELHIVHQVTEKL-----EACKGGCFSVTGILFQ 207
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 31.6 bits (71), Expect = 0.067
Identities = 23/122 (18%), Positives = 40/122 (32%), Gaps = 38/122 (31%)
Query: 11 SPVNVDTT-KVSSDKTLEEKPLTWKYNPDKTKTITNPGYCWRVDVDGEDSELTGGPLHHK 69
S + V + ++ D L + +++ K I P Y DG D + G + +
Sbjct: 429 SHLLVPASDLINKD--LVKNNVSFN-----AKDIQIPVYDTF---DGSDLRVLSGSISER 478
Query: 70 --YRLEQFHCHWGCVSNKGSEHTVDGKAYAGELHLVHWNSDKYSTFGEAAGQPDGLAVLG 127
+ + W + + H +D FG P G + LG
Sbjct: 479 IVDCIIRLPVKWETTTQFKATHILD--------------------FG-----PGGASGLG 513
Query: 128 VL 129
VL
Sbjct: 514 VL 515
>1icf_I Protein (invariant chain); cysteine proteinase, cathepsin, MHC
class II, invariant CHAI thyroglobulin type-1 domain,
hydrolase; HET: NAG; 2.00A {Homo sapiens} SCOP:
g.28.1.1 PDB: 1l3h_A
Length = 65
Score = 24.8 bits (54), Expect = 4.0
Identities = 7/17 (41%), Positives = 9/17 (52%), Gaps = 2/17 (11%)
Query: 47 GYCWRVDVDGEDSELTG 63
GYCW V +G E+
Sbjct: 39 GYCWCVFPNGT--EVPN 53
>1xim_A D-xylose isomerase; isomerase(intramolecular oxidoreductse); HET:
XYL; 2.20A {Actinoplanes missouriensis} SCOP: c.1.15.3
PDB: 4xim_A 5xim_A* 6xim_A* 7xim_A 8xim_A* 9xim_A*
3xin_A 2xim_A* 5xin_A* 1xin_A* 1bhw_A* 2xin_A* 3xim_A*
Length = 393
Score = 26.0 bits (56), Expect = 4.3
Identities = 12/67 (17%), Positives = 17/67 (25%), Gaps = 7/67 (10%)
Query: 69 KYRLEQFHCHWGCVSNKGSEHTVDGKAYAGELHLVHWNSDKYSTFGE----AAGQPDGLA 124
E H SN + + +L + N F + G
Sbjct: 212 GINPETGHEQM---SNLNFTQGIAQALWHKKLFHIDLNGQHGPKFDQDLVFGHGDLLNAF 268
Query: 125 VLGVLLE 131
L LLE
Sbjct: 269 SLVDLLE 275
>2hsz_A Novel predicted phosphatase; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; HET: UNL; 1.90A {Haemophilus somnus 129PT} SCOP:
c.108.1.6
Length = 243
Score = 25.2 bits (56), Expect = 8.0
Identities = 5/22 (22%), Positives = 9/22 (40%)
Query: 71 RLEQFHCHWGCVSNKGSEHTVD 92
L+ V+NK ++H
Sbjct: 125 ALKAQGYILAVVTNKPTKHVQP 146
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.313 0.133 0.425
Gapped
Lambda K H
0.267 0.0636 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,064,653
Number of extensions: 110300
Number of successful extensions: 191
Number of sequences better than 10.0: 1
Number of HSP's gapped: 141
Number of HSP's successfully gapped: 29
Length of query: 131
Length of database: 6,701,793
Length adjustment: 83
Effective length of query: 48
Effective length of database: 4,384,350
Effective search space: 210448800
Effective search space used: 210448800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 52 (24.0 bits)