RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy14180
(131 letters)
>d1hcba_ b.74.1.1 (A:) Carbonic anhydrase {Human (Homo sapiens),
erythrocytes, isozyme I [TaxId: 9606]}
Length = 258
Score = 132 bits (333), Expect = 3e-40
Identities = 64/133 (48%), Positives = 87/133 (65%), Gaps = 4/133 (3%)
Query: 1 MFPEASGERQSPVNVDTTKVSSDKTLEEKPLTWKYNPDKTKTITNPGYCWRVDVDGEDSE 60
++P A+G QSPV++ T++ D +L KP++ YNP K I N G+ + V+ + D+
Sbjct: 17 LYPIANGNNQSPVDIKTSETKHDTSL--KPISVSYNPATAKEIINVGHSFHVNFEDNDNR 74
Query: 61 --LTGGPLHHKYRLEQFHCHWGCVSNKGSEHTVDGKAYAGELHLVHWNSDKYSTFGEAAG 118
L GGP YRL QFH HWG + GSEHTVDG Y+ ELH+ HWNS KYS+ EAA
Sbjct: 75 SVLKGGPFSDSYRLFQFHFHWGSTNEHGSEHTVDGVKYSAELHVAHWNSAKYSSLAEAAS 134
Query: 119 QPDGLAVLGVLLE 131
+ DGLAV+GVL++
Sbjct: 135 KADGLAVIGVLMK 147
>d1flja_ b.74.1.1 (A:) Carbonic anhydrase {Rat (Rattus norvegicus),
isozyme III [TaxId: 10116]}
Length = 259
Score = 131 bits (330), Expect = 1e-39
Identities = 67/132 (50%), Positives = 82/132 (62%), Gaps = 5/132 (3%)
Query: 1 MFPEASGERQSPVNVDTTKVSSDKTLEEKPLTWKYNPDKTKTITNPGYCWRVDVDGEDSE 60
++P A G+ QSP+ + T + D +L +P + Y+P KTI N G RV D
Sbjct: 18 LYPIAKGDNQSPIELHTKDIRHDPSL--QPWSVSYDPGSAKTILNNGKTCRVVFDDTFDR 75
Query: 61 --LTGGPLHHKYRLEQFHCHWGCVSNKGSEHTVDGKAYAGELHLVHWNSDKYSTFGEAAG 118
L GGPL YRL QFH HWG + GSEHTVDG YA ELHLVHWN KY+TFGEA
Sbjct: 76 SMLRGGPLSGPYRLRQFHLHWGSSDDHGSEHTVDGVKYAAELHLVHWN-PKYNTFGEALK 134
Query: 119 QPDGLAVLGVLL 130
QPDG+AV+G+ L
Sbjct: 135 QPDGIAVVGIFL 146
>d1rj6a_ b.74.1.1 (A:) Carbonic anhydrase {Mouse (Mus musculus),
isozyme XIV [TaxId: 10090]}
Length = 259
Score = 130 bits (328), Expect = 2e-39
Identities = 51/133 (38%), Positives = 74/133 (55%), Gaps = 5/133 (3%)
Query: 1 MFPEASGERQSPVNVDTTKVSSDKTLEE-KPLTWKYNPDKTKTITNPGYCWRVDVDGEDS 59
+PE G+ QSP+N+ T V D L +P + + + N G+ ++ +
Sbjct: 17 SYPECGGDAQSPINIQTDSVIFDPDLPAVQPHGYDQLGTEPLDLHNNGHTVQLSLPPT-- 74
Query: 60 ELTGGPLHHKYRLEQFHCHWGCV-SNKGSEHTVDGKAYAGELHLVHWNSDKYSTFGEAAG 118
L G L KY Q H HWG S +GSEH ++ +A A ELH+VH++S YS+ EAA
Sbjct: 75 -LHLGGLPRKYTAAQLHLHWGQRGSLEGSEHHINSEATAAELHVVHYDSQSYSSLSEAAQ 133
Query: 119 QPDGLAVLGVLLE 131
+P GLAVLG+L+E
Sbjct: 134 KPQGLAVLGILIE 146
>d1keqa_ b.74.1.1 (A:) Carbonic anhydrase {Mouse (Mus musculus),
liver, isozyme V [TaxId: 10090]}
Length = 238
Score = 128 bits (322), Expect = 9e-39
Identities = 59/127 (46%), Positives = 76/127 (59%), Gaps = 4/127 (3%)
Query: 7 GERQSPVNVDTTKVSSDKTLEEKPLTWKYNPDKTKTITNPGYCWRVDVD--GEDSELTGG 64
G RQSP+N+ D L PL Y+ + + N GY ++V+ D EDS ++GG
Sbjct: 1 GTRQSPINIQWKDSVYDPQL--APLRVSYDAASCRYLWNTGYAFQVEFDDSCEDSGISGG 58
Query: 65 PLHHKYRLEQFHCHWGCVSNKGSEHTVDGKAYAGELHLVHWNSDKYSTFGEAAGQPDGLA 124
PL + YRL+QFH HWG GSEH VDG Y ELHLVHWNS KY +A+ +GLA
Sbjct: 59 PLGNHYRLKQFHFHWGATDEWGSEHAVDGHTYPAELHLVHWNSTKYENCKKASVGENGLA 118
Query: 125 VLGVLLE 131
V+GV L+
Sbjct: 119 VIGVFLK 125
>d1luga_ b.74.1.1 (A:) Carbonic anhydrase {Human (Homo sapiens),
erythrocytes, isozyme II [TaxId: 9606]}
Length = 259
Score = 125 bits (315), Expect = 2e-37
Identities = 70/133 (52%), Positives = 85/133 (63%), Gaps = 5/133 (3%)
Query: 1 MFPEASGERQSPVNVDTTKVSSDKTLEEKPLTWKYNPDKTKTITNPGYCWRVDVDGEDSE 60
FP A GERQSPV++DT D +L KPL+ Y+ + I N G+ + V+ D +
Sbjct: 18 DFPIAKGERQSPVDIDTHTAKYDPSL--KPLSVSYDQATSLRILNNGHAFNVEFDDSQDK 75
Query: 61 --LTGGPLHHKYRLEQFHCHWGCVSNKGSEHTVDGKAYAGELHLVHWNSDKYSTFGEAAG 118
L GGPL YRL QFH HWG + +GSEHTVD K YA ELHLVHWN KY FG+A
Sbjct: 76 AVLKGGPLDGTYRLIQFHFHWGSLDGQGSEHTVDKKKYAAELHLVHWN-TKYGDFGKAVQ 134
Query: 119 QPDGLAVLGVLLE 131
QPDGLAVLG+ L+
Sbjct: 135 QPDGLAVLGIFLK 147
>d1znca_ b.74.1.1 (A:) Carbonic anhydrase {Human (Homo sapiens),
isozyme IV [TaxId: 9606]}
Length = 262
Score = 121 bits (304), Expect = 9e-36
Identities = 44/128 (34%), Positives = 69/128 (53%), Gaps = 5/128 (3%)
Query: 6 SGERQSPVNVDTTKVSSDKTLEEKPLTWK-YNPDKTKTITNPGYCWRVDVDGEDSELTGG 64
+RQSP+N+ TTK DK L + Y+ +T T+ N G+ + ++ + ++GG
Sbjct: 25 QKDRQSPINIVTTKAKVDKKL--GRFFFSGYDKKQTWTVQNNGHSVMMLLEN-KASISGG 81
Query: 65 PLHHKYRLEQFHCHWGCVSNKGSEHTVDGKAYAGELHLVHWNSD-KYSTFGEAAGQPDGL 123
L Y+ +Q H HW + KGSEH++DG+ +A E+H+VH EA D +
Sbjct: 82 GLPAPYQAKQLHLHWSDLPYKGSEHSLDGEHFAMEMHIVHEKEKGTSRNVKEAQDPEDEI 141
Query: 124 AVLGVLLE 131
AVL L+E
Sbjct: 142 AVLAFLVE 149
>d1jd0a_ b.74.1.1 (A:) Carbonic anhydrase {Human (Homo sapiens),
isozyme XII [TaxId: 9606]}
Length = 260
Score = 117 bits (294), Expect = 2e-34
Identities = 46/133 (34%), Positives = 73/133 (54%), Gaps = 9/133 (6%)
Query: 1 MFPEASGERQSPVNVDTTKVSSDKTLEEKPLTWKY---NPDKTKTITNPGYCWRVDVDGE 57
+P G QSP+++ + + D +L PL ++ + +K +TN G+ ++++
Sbjct: 16 KYPSCGGLLQSPIDLHSDILQYDASL--TPLEFQGYNLSANKQFLLTNNGHSVKLNLP-- 71
Query: 58 DSELTGGPLHHKYRLEQFHCHWGCV-SNKGSEHTVDGKAYAGELHLVHWNSDKYSTFGEA 116
S++ L +Y Q H HWG GSEHTV G+ +A ELH+VH+NSD Y A
Sbjct: 72 -SDMHIQGLQSRYSATQLHLHWGNPNDPHGSEHTVSGQHFAAELHIVHYNSDLYPDASTA 130
Query: 117 AGQPDGLAVLGVL 129
+ + +GLAVL VL
Sbjct: 131 SNKSEGLAVLAVL 143
>d2znca_ b.74.1.1 (A:) Carbonic anhydrase {Mouse (Mus musculus),
isozyme IV [TaxId: 10090]}
Length = 258
Score = 105 bits (262), Expect = 1e-29
Identities = 35/128 (27%), Positives = 57/128 (44%), Gaps = 9/128 (7%)
Query: 5 ASGERQSPVNVDTTKVSSDKTLEEKPLTW-KYNPDKTKTITNPGYCWRVDVDGEDSELTG 63
+QSP+N+ T + + L P Y+ + I N + + + G + G
Sbjct: 24 CKENQQSPINIVTARTKVNPRL--TPFILVGYDQKQQWPIKNNQHTVEMTLGGGAC-IIG 80
Query: 64 GPLHHKYRLEQFHCHWGCVSNKGSEHTVDGKAYAGELHLVHWNSDKYSTFGEAAGQPDGL 123
G L +Y Q H HW ++ GSEH++DG+ +A E+H+VH D
Sbjct: 81 GDLPARYEAVQLHLHWSNGNDNGSEHSIDGRHFAMEMHIVHKKLTSSK-----EDSKDKF 135
Query: 124 AVLGVLLE 131
AVL ++E
Sbjct: 136 AVLAFMIE 143
>d1kopa_ b.74.1.1 (A:) Carbonic anhydrase {Neisseria gonorrhoeae
[TaxId: 485]}
Length = 223
Score = 76.8 bits (188), Expect = 5e-19
Identities = 28/108 (25%), Positives = 45/108 (41%), Gaps = 14/108 (12%)
Query: 5 ASGERQSPVNVDTTKVSSDKTLEEKPLTWKYNPDKTKTITNPGYCWRVDVDGEDSELTGG 64
++G+ QSPVN+ T + Y P + N G+ +V+ + LT
Sbjct: 26 STGKNQSPVNITETVSGKLP-----AIKVNYKPSMV-DVENNGHTIQVNYPEGGNTLTVN 79
Query: 65 PLHHKYRLEQFHCHWGCVSNKGSEHTVDGKAYAGELHLVHWNSDKYST 112
Y L+QFH H SE+ + G+ + E H VH + +K
Sbjct: 80 --GRTYTLKQFHFHVP------SENQIKGRTFPMEAHFVHLDENKQPL 119
>d2bf5a1 d.137.1.1 (A:11-102) Toluene-4-monooxygenase catalytic
effector protein {Pseudomonas mendocina [TaxId: 300]}
Length = 92
Score = 25.4 bits (56), Expect = 1.1
Identities = 10/49 (20%), Positives = 17/49 (34%), Gaps = 13/49 (26%)
Query: 36 NPDKTKTIT-NPGYCWRVDVDG-------EDSELTGGPLHHKYRLEQFH 76
NP K T+ Y R+ +G E G P + +++
Sbjct: 24 NPGKEITVEDRRAY-VRIAAEGELILTRKTLEEQLGRP----FNMQELE 67
>d1zata2 d.335.1.1 (A:217-338) L,D-transpeptidase, pre-catalytic
domain {Enterococcus faecium [TaxId: 1352]}
Length = 122
Score = 25.5 bits (56), Expect = 1.4
Identities = 7/34 (20%), Positives = 10/34 (29%)
Query: 29 KPLTWKYNPDKTKTITNPGYCWRVDVDGEDSELT 62
+K T+ Y W + D E L
Sbjct: 65 NDTKFKSTKRGEVTVPVGTYSWTIQTDSETEALK 98
>d1ckva_ d.137.1.1 (A:) Soluble methane monooxygenase regulatory
protein B {Escherichia coli [TaxId: 562]}
Length = 141
Score = 23.7 bits (51), Expect = 8.3
Identities = 7/44 (15%), Positives = 17/44 (38%), Gaps = 3/44 (6%)
Query: 36 NPDKTKTITNPGYCWRVDVDGE---DSELTGGPLHHKYRLEQFH 76
N + T + + W + +G+ D + L ++ + F
Sbjct: 63 NVNPTVNVEDRAGYWWIKANGKIEVDCDEISELLGRQFNVYDFL 106
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.313 0.133 0.425
Gapped
Lambda K H
0.267 0.0469 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 515,140
Number of extensions: 21740
Number of successful extensions: 67
Number of sequences better than 10.0: 1
Number of HSP's gapped: 49
Number of HSP's successfully gapped: 19
Length of query: 131
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 55
Effective length of database: 1,364,116
Effective search space: 75026380
Effective search space used: 75026380
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 48 (22.9 bits)