BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14193
(239 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|449681386|ref|XP_002157256.2| PREDICTED: RNA-binding protein 34-like [Hydra magnipapillata]
Length = 360
Score = 140 bits (354), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 64/135 (47%), Positives = 91/135 (67%)
Query: 54 VTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKAL 113
+ +F +G +ET+R RSVPVA+ LP+K + K H++R +MNAYV FK S EKAL
Sbjct: 119 IKKLFAKFGNIETIRIRSVPVAESKLPKKVALLQKKFHKERDSMNAYVVFKEKSSAEKAL 178
Query: 114 EMNGHVIDEHTIRVDKALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRD 173
E NG++++ +RVDKA +F+GN+PF +EELR F+ CG I+++R+IRD
Sbjct: 179 ESNGYLLEGLHLRVDKADFQKVDQKLCLFVGNLPFSLSDEELRSHFKDCGWIEDIRIIRD 238
Query: 174 QHTNIGKGFGYVNFK 188
+ T +GKGFGYV FK
Sbjct: 239 KATGLGKGFGYVRFK 253
>gi|49114983|gb|AAH72838.1| LOC443584 protein, partial [Xenopus laevis]
Length = 403
Score = 136 bits (342), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 72/144 (50%), Positives = 95/144 (65%), Gaps = 8/144 (5%)
Query: 53 SVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKA 112
++TS+FK +G +E++RFRSV A+ L RK KVH KR N+NAYV FK+ S KA
Sbjct: 185 TLTSLFKEFGPIESLRFRSVARAEANLSRKVATIQRKVHPKRNNINAYVVFKDESSASKA 244
Query: 113 LEMNG-HVIDEHTIRVDKALTTTKSNSH----SIFIGNIPFEAEEEELRKAFESCGEIDN 167
L NG V IRVD A +KS+SH S F+GN+P++ EEE +RK F CG++
Sbjct: 245 LMRNGAEVGSGFHIRVDMA---SKSSSHDNKRSAFVGNLPYDIEEESIRKHFSQCGDVQG 301
Query: 168 VRLIRDQHTNIGKGFGYVNFKAEE 191
VR+IRDQ T IGKGFGYV F++ +
Sbjct: 302 VRIIRDQKTGIGKGFGYVLFESAD 325
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 75/180 (41%), Gaps = 65/180 (36%)
Query: 111 KALEMNGHVIDEHTIRVDKALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVR- 169
++L+ +G V+ +V++A K N ++F+GN+P + ++ L F+ G I+++R
Sbjct: 143 QSLDEDGIVVQPRKRKVNRAEERIK-NKRTVFVGNLPADCTKQTLTSLFKEFGPIESLRF 201
Query: 170 --------------------------------LIRDQHT----------NIGKGF----- 182
+ +D+ + +G GF
Sbjct: 202 RSVARAEANLSRKVATIQRKVHPKRNNINAYVVFKDESSASKALMRNGAEVGSGFHIRVD 261
Query: 183 ----------------GYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 226
G + + EEE +RK F CG++ VR+IRDQ T IGKGFGYV F
Sbjct: 262 MASKSSSHDNKRSAFVGNLPYDIEEESIRKHFSQCGDVQGVRIIRDQKTGIGKGFGYVLF 321
>gi|147898640|ref|NP_001085272.1| RNA binding motif protein 34 [Xenopus laevis]
gi|62185676|gb|AAH92323.1| LOC443584 protein [Xenopus laevis]
Length = 414
Score = 136 bits (342), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 72/144 (50%), Positives = 95/144 (65%), Gaps = 8/144 (5%)
Query: 53 SVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKA 112
++TS+FK +G +E++RFRSV A+ L RK KVH KR N+NAYV FK+ S KA
Sbjct: 185 TLTSLFKEFGPIESLRFRSVARAEANLSRKVATIQRKVHPKRNNINAYVVFKDESSASKA 244
Query: 113 LEMNG-HVIDEHTIRVDKALTTTKSNSH----SIFIGNIPFEAEEEELRKAFESCGEIDN 167
L NG V IRVD A +KS+SH S F+GN+P++ EEE +RK F CG++
Sbjct: 245 LMRNGAEVGSGFHIRVDMA---SKSSSHDNKRSAFVGNLPYDIEEESIRKHFSQCGDVQG 301
Query: 168 VRLIRDQHTNIGKGFGYVNFKAEE 191
VR+IRDQ T IGKGFGYV F++ +
Sbjct: 302 VRIIRDQKTGIGKGFGYVLFESAD 325
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 75/180 (41%), Gaps = 65/180 (36%)
Query: 111 KALEMNGHVIDEHTIRVDKALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVR- 169
++L+ +G V+ +V++A K N ++F+GN+P + ++ L F+ G I+++R
Sbjct: 143 QSLDEDGIVVQPRKRKVNRAEERIK-NKRTVFVGNLPADCTKQTLTSLFKEFGPIESLRF 201
Query: 170 --------------------------------LIRDQHT----------NIGKGF----- 182
+ +D+ + +G GF
Sbjct: 202 RSVARAEANLSRKVATIQRKVHPKRNNINAYVVFKDESSASKALMRNGAEVGSGFHIRVD 261
Query: 183 ----------------GYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 226
G + + EEE +RK F CG++ VR+IRDQ T IGKGFGYV F
Sbjct: 262 MASKSSSHDNKRSAFVGNLPYDIEEESIRKHFSQCGDVQGVRIIRDQKTGIGKGFGYVLF 321
>gi|405973847|gb|EKC38537.1| Serine/threonine-protein kinase PAK 6 [Crassostrea gigas]
Length = 1486
Score = 134 bits (338), Expect = 2e-29, Method: Composition-based stats.
Identities = 62/136 (45%), Positives = 93/136 (68%), Gaps = 1/136 (0%)
Query: 57 MFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMN 116
+F+ +G +ETVR R VP +D LP++A + + H +R N+ AYV FK ES +KAL+MN
Sbjct: 293 LFRKFGSIETVRLRCVPRSDTKLPKRAAVILKDFHPERDNICAYVCFKEEESAQKALKMN 352
Query: 117 GHVIDEHTIRVDKALTTTKSN-SHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQH 175
G ++ IRVD + K++ SIF+GN+P + +EE++R FESCG+I NVR+IRD
Sbjct: 353 GKLVKSFHIRVDMSNHDPKTDFKRSIFVGNLPLDIKEEDVRSHFESCGKIRNVRVIRDSK 412
Query: 176 TNIGKGFGYVNFKAEE 191
+ +GKG YV FK+++
Sbjct: 413 SGVGKGICYVTFKSKD 428
Score = 62.8 bits (151), Expect = 1e-07, Method: Composition-based stats.
Identities = 45/162 (27%), Positives = 62/162 (38%), Gaps = 63/162 (38%)
Query: 129 KALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRL-----------------I 171
K+ T + +IF+GN+P +++EL K F G I+ VRL +
Sbjct: 264 KSKRDTSKDCKTIFVGNLPVNTDKKELHKLFRKFGSIETVRLRCVPRSDTKLPKRAAVIL 323
Query: 172 RDQHTNIGKGFGYVNFKAE----------------------------------------- 190
+D H YV FK E
Sbjct: 324 KDFHPERDNICAYVCFKEEESAQKALKMNGKLVKSFHIRVDMSNHDPKTDFKRSIFVGNL 383
Query: 191 -----EEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK 227
EE++R FESCG+I NVR+IRD + +GKG YV FK
Sbjct: 384 PLDIKEEDVRSHFESCGKIRNVRVIRDSKSGVGKGICYVTFK 425
>gi|253683404|ref|NP_001156572.1| RNA binding motif protein 34 [Acyrthosiphon pisum]
gi|239792368|dbj|BAH72536.1| ACYPI010185 [Acyrthosiphon pisum]
Length = 418
Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 64/143 (44%), Positives = 91/143 (63%), Gaps = 2/143 (1%)
Query: 51 LSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVE 110
+S+V +FK +GEVET R RSV V ++ +P++ I H +R N YVRFK +E +
Sbjct: 191 MSAVKKLFKQFGEVETTRLRSVAVKNLEVPKRVSIMKGDFHPQRDTANVYVRFKTIEEAQ 250
Query: 111 KALEMNGHVIDEHTIRVDKALTTT-KSN-SHSIFIGNIPFEAEEEELRKAFESCGEIDNV 168
KAL +N + HTIRVD AL + K N IFIGN+P+ +E+E+ F+ CG I V
Sbjct: 251 KALVLNATQFEGHTIRVDMALNSNHKQNMKKGIFIGNLPYSIQEDEIWDYFKDCGTISAV 310
Query: 169 RLIRDQHTNIGKGFGYVNFKAEE 191
R++RD T + KGFGYV+F+ +E
Sbjct: 311 RIVRDNATGVSKGFGYVDFETKE 333
>gi|66804529|ref|XP_635997.1| hypothetical protein DDB_G0289941 [Dictyostelium discoideum AX4]
gi|60464334|gb|EAL62483.1| hypothetical protein DDB_G0289941 [Dictyostelium discoideum AX4]
Length = 481
Score = 129 bits (325), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 70/149 (46%), Positives = 97/149 (65%), Gaps = 5/149 (3%)
Query: 48 NHALSS-VTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNL 106
NHA + + +FKP+G++E++RFRS+P++ I RK + HEKR NAY+ FK +
Sbjct: 267 NHAKDNELKQLFKPFGQIESIRFRSIPLSSIDGNRKETFIKKEFHEKRETCNAYIVFKQI 326
Query: 107 ESVEKAL-EMNGHVIDEHTIRVDKA--LTTTKSNSHSIFIGNIPFEAEEEELRKAFESC- 162
+KA +MNG +RVD A T S++ +IFIGNIP+E EEEEL F+
Sbjct: 327 ADAKKAAKQMNGKEAFGKHLRVDMADHKPTKASDAKTIFIGNIPYETEEEELFLIFDKTF 386
Query: 163 GEIDNVRLIRDQHTNIGKGFGYVNFKAEE 191
G++ +VR+IRD HTNIGKGFGYVNF +E
Sbjct: 387 GDVVSVRIIRDSHTNIGKGFGYVNFSTDE 415
>gi|89266850|emb|CAJ83915.1| novel protein containing RNA recognition motifs. (a.k.a. RRM, RBD,
or RNP domain) [Xenopus (Silurana) tropicalis]
Length = 406
Score = 129 bits (324), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 67/138 (48%), Positives = 89/138 (64%), Gaps = 2/138 (1%)
Query: 56 SMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALEM 115
S+FK +G +E++RFRSV A+ L RK KVH KR N+NAY+ FK+ S +AL+
Sbjct: 186 SLFKEFGHIESMRFRSVARAEANLSRKVAAIQRKVHPKRKNINAYIVFKDESSASQALKR 245
Query: 116 NG-HVIDEHTIRVDKALT-TTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRD 173
NG V IRVD A ++ N S FIGN+P+E EEE +R F CG++ VR+IRD
Sbjct: 246 NGAEVGSGFHIRVDIASKRSSHDNKRSAFIGNLPYEIEEEAVRDHFSECGKVQGVRIIRD 305
Query: 174 QHTNIGKGFGYVNFKAEE 191
Q T IGKGFGYV F++ +
Sbjct: 306 QKTGIGKGFGYVLFESAD 323
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 76/180 (42%), Gaps = 65/180 (36%)
Query: 111 KALEMNGHVIDEHTIRVDKALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVR- 169
++L+ +G V+ +V++A K N ++F+GN+P + ++ L+ F+ G I+++R
Sbjct: 141 QSLDDDGVVVQPRKRKVNRAEERIK-NKRTVFVGNLPADYTKQMLKSLFKEFGHIESMRF 199
Query: 170 --------------------------------LIRDQHT----------NIGKGF----- 182
+ +D+ + +G GF
Sbjct: 200 RSVARAEANLSRKVAAIQRKVHPKRKNINAYIVFKDESSASQALKRNGAEVGSGFHIRVD 259
Query: 183 ----------------GYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 226
G + ++ EEE +R F CG++ VR+IRDQ T IGKGFGYV F
Sbjct: 260 IASKRSSHDNKRSAFIGNLPYEIEEEAVRDHFSECGKVQGVRIIRDQKTGIGKGFGYVLF 319
>gi|52345686|ref|NP_001004890.1| RNA binding motif protein 34 [Xenopus (Silurana) tropicalis]
gi|49523226|gb|AAH75294.1| MGC88935 protein [Xenopus (Silurana) tropicalis]
Length = 412
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 67/140 (47%), Positives = 90/140 (64%), Gaps = 2/140 (1%)
Query: 54 VTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKAL 113
+ S+FK +G +E++RFRSV A+ L RK KVH KR N+NAY+ FK+ S +AL
Sbjct: 184 LKSLFKEFGHIESMRFRSVARAEANLSRKVAAIQRKVHPKRKNINAYIVFKDESSASQAL 243
Query: 114 EMNG-HVIDEHTIRVDKALT-TTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLI 171
+ NG V IRVD A ++ N S FIGN+P+E EEE +R F CG++ VR+I
Sbjct: 244 KRNGAEVGSGFHIRVDIASKRSSHDNKRSAFIGNLPYEIEEEAVRDHFSECGKVQGVRII 303
Query: 172 RDQHTNIGKGFGYVNFKAEE 191
RDQ T IGKGFGYV F++ +
Sbjct: 304 RDQKTGIGKGFGYVLFESAD 323
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 76/180 (42%), Gaps = 65/180 (36%)
Query: 111 KALEMNGHVIDEHTIRVDKALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVR- 169
++L+ +G V+ +V++A K N ++F+GN+P + ++ L+ F+ G I+++R
Sbjct: 141 QSLDDDGVVVQPRKRKVNRAEERIK-NKRTVFVGNLPADYTKQMLKSLFKEFGHIESMRF 199
Query: 170 --------------------------------LIRDQHT----------NIGKGF----- 182
+ +D+ + +G GF
Sbjct: 200 RSVARAEANLSRKVAAIQRKVHPKRKNINAYIVFKDESSASQALKRNGAEVGSGFHIRVD 259
Query: 183 ----------------GYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 226
G + ++ EEE +R F CG++ VR+IRDQ T IGKGFGYV F
Sbjct: 260 IASKRSSHDNKRSAFIGNLPYEIEEEAVRDHFSECGKVQGVRIIRDQKTGIGKGFGYVLF 319
>gi|345566286|gb|EGX49229.1| hypothetical protein AOL_s00078g262 [Arthrobotrys oligospora ATCC
24927]
Length = 574
Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 66/159 (41%), Positives = 99/159 (62%), Gaps = 3/159 (1%)
Query: 41 PSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAY 100
PS S ++ S FK +G V ++RFRS+ +D +PRKA +H + N+NAY
Sbjct: 293 PSSIISDKAQYKTLQSAFKVHGVVSSIRFRSIAFSD-QIPRKAAFITKALHVDQNNVNAY 351
Query: 101 VRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKSNSHS-IFIGNIPFEAEEEELRKAF 159
+ FK E+ +L++NG ++ H IRVD K++S +F+GN+ FEA EE L K F
Sbjct: 352 IVFKTPEAARSSLQLNGTIVLNHHIRVDSVAHPAKNDSRKCVFVGNLDFEAAEESLWKHF 411
Query: 160 ESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAF 198
+CG+++NVRL+RD TN+GKGF YV F A++ ++ KA
Sbjct: 412 STCGKVENVRLVRDAKTNVGKGFAYVQF-ADDVDVEKAL 449
>gi|118398866|ref|XP_001031760.1| RNA binding protein [Tetrahymena thermophila]
gi|89286093|gb|EAR84097.1| RNA binding protein [Tetrahymena thermophila SB210]
Length = 451
Score = 127 bits (318), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 67/151 (44%), Positives = 92/151 (60%), Gaps = 1/151 (0%)
Query: 52 SSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEK 111
S + FK YG++E + RSVPV + +P++A + + K + NAY+ F E EK
Sbjct: 96 SQIAKEFKQYGKIEKIWIRSVPVENSKMPKRASVILKKFKDGADRKNAYILFSTQEEAEK 155
Query: 112 ALEMNGHVIDEHTIRVDKALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLI 171
+LE NG V E +RVDKA + +IF+GN+ F+ EE+LR FESCG+I NVR+I
Sbjct: 156 SLEANGKVFLEKHLRVDKANEKILDYTRTIFVGNLHFKISEEQLRHHFESCGDILNVRVI 215
Query: 172 RDQHTNIGKGFGYVNFKAEEEELRKAFESCG 202
RD T+ GKGFGYV FK E+ + A E G
Sbjct: 216 RDPKTHEGKGFGYVFFK-EKTGFQNALEKNG 245
>gi|328766510|gb|EGF76564.1| hypothetical protein BATDEDRAFT_36238 [Batrachochytrium
dendrobatidis JAM81]
Length = 417
Score = 126 bits (317), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 63/141 (44%), Positives = 93/141 (65%), Gaps = 4/141 (2%)
Query: 50 ALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESV 109
AL + ++F +G +E +RFRS+ + LPRK + H+KR ++NAY+ ++ ESV
Sbjct: 189 ALQQLKTLFSQFGTIECIRFRSIAF-NSKLPRKLAYSAKQFHDKRDSLNAYIVYELPESV 247
Query: 110 EKALEMNGHVIDEHTIRVDKALTTTK---SNSHSIFIGNIPFEAEEEELRKAFESCGEID 166
KALE++G + E +RVD++ TT + + SIFIGN+ F+ EE L F CG+I
Sbjct: 248 SKALELHGTLFLEKHLRVDRSETTQQKKYDHKKSIFIGNLLFDISEEALWSFFSDCGDIT 307
Query: 167 NVRLIRDQHTNIGKGFGYVNF 187
NVR+IRD++TN+GKGFGYV F
Sbjct: 308 NVRVIRDRNTNVGKGFGYVQF 328
>gi|291402150|ref|XP_002717371.1| PREDICTED: poly(A) binding protein, nuclear 1-like [Oryctolagus
cuniculus]
Length = 430
Score = 126 bits (317), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 64/135 (47%), Positives = 87/135 (64%), Gaps = 1/135 (0%)
Query: 54 VTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKAL 113
+ S FK YG +E+VRFRS+ A+ TL +K K+H + N+NAYV FK+ + KAL
Sbjct: 200 LKSFFKEYGPIESVRFRSLIPAEGTLSKKLAAIKRKIHPDQKNINAYVVFKDQSAATKAL 259
Query: 114 EMNG-HVIDEHTIRVDKALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIR 172
E NG H+ D IRVD A T+ + S+F+GN+P++ EE + + F CG I VR++R
Sbjct: 260 ERNGTHIADGFRIRVDLASETSSRDKRSVFVGNLPYKVEETAVEEHFLDCGNIVAVRIVR 319
Query: 173 DQHTNIGKGFGYVNF 187
DQ T IGKGFGYV F
Sbjct: 320 DQITGIGKGFGYVLF 334
>gi|406608094|emb|CCH40528.1| Nucleolar protein 12 [Wickerhamomyces ciferrii]
Length = 458
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 61/132 (46%), Positives = 88/132 (66%), Gaps = 2/132 (1%)
Query: 58 FKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNG 117
F +G +E++RFRS+ + +PRKA K+HE R ++NAY+ FK ++ K+LE NG
Sbjct: 196 FTQFGLIESIRFRSISFNE-PIPRKAAFVQQKLHESRDSINAYIVFKEKDAARKSLEANG 254
Query: 118 HVIDEHTIRVDKALTTTK-SNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHT 176
V+ + +RVD +K N +IF+GN+ FE +EEEL F CGEI++VR++RD T
Sbjct: 255 KVLFDLHLRVDSVSHPSKIDNKRTIFVGNLDFEEKEEELWNIFSECGEIESVRIVRDSTT 314
Query: 177 NIGKGFGYVNFK 188
N+GKGFGYV FK
Sbjct: 315 NMGKGFGYVQFK 326
>gi|242022697|ref|XP_002431775.1| RNA-binding protein, putative [Pediculus humanus corporis]
gi|212517100|gb|EEB19037.1| RNA-binding protein, putative [Pediculus humanus corporis]
Length = 292
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 55/139 (39%), Positives = 100/139 (71%), Gaps = 1/139 (0%)
Query: 52 SSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEK 111
+ VT +F +G+V + R R +P+A I + +K + + +R ++ AYV+F + +SV+
Sbjct: 44 TKVTKLFSRFGKVVSARIRCIPIASINMKKKVAAIKKEFNPRRNSVVAYVKFASEDSVKA 103
Query: 112 ALEMNGHVIDEHTIRVDKALTTTKSNSH-SIFIGNIPFEAEEEELRKAFESCGEIDNVRL 170
A++ NG ++D H +R++ A T+T+ +++ +IF+G +PF+ E++EL + FE+CG+I++VR+
Sbjct: 104 AVDANGMIVDGHHLRINLAETSTEIDTNKAIFVGGLPFDIEDDELWEFFENCGKINSVRI 163
Query: 171 IRDQHTNIGKGFGYVNFKA 189
IRD HT++GKG GYVNF +
Sbjct: 164 IRDSHTSMGKGIGYVNFDS 182
>gi|296230931|ref|XP_002760846.1| PREDICTED: RNA-binding protein 34 [Callithrix jacchus]
Length = 429
Score = 124 bits (310), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 62/135 (45%), Positives = 87/135 (64%), Gaps = 1/135 (0%)
Query: 54 VTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKAL 113
+ S FK YG++E+VRFRS+ A+ TL +K K+H + N+NAYV FK+ + +AL
Sbjct: 201 LKSFFKEYGQIESVRFRSLIPAEGTLSKKLAAIKRKIHPDQKNINAYVVFKDGSAATQAL 260
Query: 114 EMNG-HVIDEHTIRVDKALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIR 172
+ NG + D IRVD A T+ + S+F+GN+P++ EE + K F CG I VR++R
Sbjct: 261 KRNGAQIADGFRIRVDLASATSSRDKRSVFVGNLPYKVEESAVEKHFLDCGSIMAVRIVR 320
Query: 173 DQHTNIGKGFGYVNF 187
DQ T IGKGFGYV F
Sbjct: 321 DQVTGIGKGFGYVLF 335
>gi|426334252|ref|XP_004028672.1| PREDICTED: AT-rich interactive domain-containing protein 4B [Gorilla
gorilla gorilla]
Length = 1500
Score = 124 bits (310), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 62/135 (45%), Positives = 88/135 (65%), Gaps = 1/135 (0%)
Query: 54 VTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKAL 113
+ S FK YG++E+VRFRS+ A+ TL +K K+H + N+NAYV FK + +AL
Sbjct: 1271 LKSFFKEYGQIESVRFRSLIPAEGTLSKKLAAIKRKIHPDQKNINAYVVFKEESAAMQAL 1330
Query: 114 EMNG-HVIDEHTIRVDKALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIR 172
+ NG H+ D IRVD+A T+ + S+F+GN+P++ EE + K F CG I VR++R
Sbjct: 1331 KRNGAHIADGFRIRVDRASETSSRDKRSVFVGNLPYKVEESAIEKHFLDCGSIMAVRIVR 1390
Query: 173 DQHTNIGKGFGYVNF 187
D+ T IGKGFGYV F
Sbjct: 1391 DKMTGIGKGFGYVLF 1405
>gi|189237665|ref|XP_001812360.1| PREDICTED: similar to RNA binding motif protein 34 [Tribolium
castaneum]
gi|270007816|gb|EFA04264.1| hypothetical protein TcasGA2_TC014554 [Tribolium castaneum]
Length = 369
Score = 124 bits (310), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 61/138 (44%), Positives = 86/138 (62%), Gaps = 5/138 (3%)
Query: 54 VTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKAL 113
+ FK YG VE+VR R VPVAD LP+K + + H R + Y+RF++ + K+
Sbjct: 127 IKQFFKKYGNVESVRIRGVPVADPKLPKKVAMIKREFHPDRKGFHGYIRFESRDDAIKST 186
Query: 114 EMNGHVIDEHTIRVDKALTTTKSN---SHSIFIGNIPFEAEEEELRKAFESCGEIDNVRL 170
E +G + EH +RV + K + +IF+GN+ F AEE++L K FESCG I +VR+
Sbjct: 187 EADGVLFQEHHLRV--CMCDAKESPDEDKAIFVGNLSFYAEEDDLWKTFESCGPIASVRI 244
Query: 171 IRDQHTNIGKGFGYVNFK 188
+RD T IGKGFG+VNFK
Sbjct: 245 VRDGKTGIGKGFGFVNFK 262
>gi|452824970|gb|EME31969.1| nucleolar RNA-binding protein [Galdieria sulphuraria]
Length = 254
Score = 123 bits (309), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 56/132 (42%), Positives = 87/132 (65%)
Query: 57 MFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMN 116
FK G +E+VRFRS+PV ++ LP++A + + +R +MNAYV F+N +V+ AL +N
Sbjct: 43 FFKNCGPIESVRFRSIPVKNVKLPKRAAVLSGERLPERDSMNAYVVFENKVAVDIALSLN 102
Query: 117 GHVIDEHTIRVDKALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHT 176
G V +++D+ T S + IF+GN+PF+ E+E++ + F G + VR++RD+HT
Sbjct: 103 GSVFQNKHLKIDRDERPTVSVGYCIFVGNLPFDVEDEQVYEVFSKIGSVKYVRIVRDKHT 162
Query: 177 NIGKGFGYVNFK 188
GKGFGYV FK
Sbjct: 163 GFGKGFGYVCFK 174
Score = 38.5 bits (88), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 24/33 (72%)
Query: 138 SHSIFIGNIPFEAEEEELRKAFESCGEIDNVRL 170
+ +IF+GN+P + E+L K F++CG I++VR
Sbjct: 23 ARTIFVGNVPLQTRREKLIKFFKNCGPIESVRF 55
>gi|291220976|ref|XP_002730499.1| PREDICTED: hypothetical protein [Saccoglossus kowalevskii]
Length = 458
Score = 123 bits (308), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 61/136 (44%), Positives = 88/136 (64%), Gaps = 1/136 (0%)
Query: 54 VTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKAL 113
+T +FK YG++E+VR RS + + LP+K + H R N+NAYV +K S K+L
Sbjct: 197 LTKLFKKYGDIESVRLRSAAPSTLALPKKVVMIKEDFHPDRKNLNAYVVYKEEISALKSL 256
Query: 114 EMNGHVIDEHTIRVDKALTTTKSN-SHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIR 172
+ NG V+ H IRVD + +K + S+FIGN+P++ +EE +R+ F CG + +VRL+R
Sbjct: 257 KKNGKVVRGHHIRVDVSSNASKHDHQRSVFIGNLPYKIDEEIVRQHFMQCGNVISVRLVR 316
Query: 173 DQHTNIGKGFGYVNFK 188
D T IGKGFGYV FK
Sbjct: 317 DGKTGIGKGFGYVLFK 332
>gi|440901028|gb|ELR52037.1| RNA-binding protein 34 [Bos grunniens mutus]
Length = 428
Score = 123 bits (308), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 60/135 (44%), Positives = 88/135 (65%), Gaps = 1/135 (0%)
Query: 54 VTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKAL 113
+ S FK YG++E+VRFRS+ A+ TL +K K+H + N+NAYV FK+ + KAL
Sbjct: 201 LKSFFKEYGQIESVRFRSLIPAEGTLSKKLAAIKRKIHPDQKNINAYVVFKDESAATKAL 260
Query: 114 EMNGHVIDEH-TIRVDKALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIR 172
E NG +E +RVD A T+ + S+F+GN+P++ EE + K F +CG + VR++R
Sbjct: 261 ERNGAQFEEGFRVRVDLATETSSRDKRSVFVGNLPYKVEESAVEKHFLACGNVVAVRIVR 320
Query: 173 DQHTNIGKGFGYVNF 187
DQ T +G+GFGYV F
Sbjct: 321 DQVTGVGRGFGYVLF 335
>gi|431895672|gb|ELK05098.1| RNA-binding protein 34 [Pteropus alecto]
Length = 448
Score = 123 bits (308), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 61/139 (43%), Positives = 88/139 (63%), Gaps = 1/139 (0%)
Query: 51 LSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVE 110
L + S FK YG++E+VRFRSV A+ TL +K KVH + N+NAYV FK+ S
Sbjct: 218 LEKLKSFFKEYGQIESVRFRSVIPAEGTLSKKLAAIKRKVHPDQKNINAYVVFKDENSAA 277
Query: 111 KALEMNG-HVIDEHTIRVDKALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVR 169
+AL NG + D IRVD A T+ + S+F+GN+P++AEE + + F CG + VR
Sbjct: 278 RALSRNGAQIADGFRIRVDLASETSSRDKRSVFVGNLPYKAEEPAVEEHFLDCGSVVAVR 337
Query: 170 LIRDQHTNIGKGFGYVNFK 188
++RD T +G+GFG+V F+
Sbjct: 338 IVRDPRTGVGRGFGFVLFE 356
>gi|194042563|ref|XP_001925470.1| PREDICTED: RNA-binding protein 34 [Sus scrofa]
Length = 424
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 60/135 (44%), Positives = 86/135 (63%), Gaps = 1/135 (0%)
Query: 54 VTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKAL 113
+ S FK YG++E+VRFRS+ A+ TL +K K+H + N+NAYV FK+ + KAL
Sbjct: 197 LKSFFKEYGQIESVRFRSLIPAEGTLSKKLAAIKRKIHPDQKNINAYVVFKDESAAAKAL 256
Query: 114 EMNG-HVIDEHTIRVDKALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIR 172
E NG + D IRVD A T+ + S+F+GN+P++ EE + K F CG + VR++R
Sbjct: 257 ERNGAQIADGFRIRVDLASETSSRDKRSVFVGNLPYKVEESAVEKHFLDCGSVVAVRIVR 316
Query: 173 DQHTNIGKGFGYVNF 187
D T +G+GFGYV F
Sbjct: 317 DPVTGVGRGFGYVLF 331
>gi|345491945|ref|XP_001599982.2| PREDICTED: nucleolar protein 12-like [Nasonia vitripennis]
Length = 613
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 55/149 (36%), Positives = 98/149 (65%), Gaps = 7/149 (4%)
Query: 47 KNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNL 106
K + ++ +F+P+GE++++R R V D + K K+H K + + YV FK
Sbjct: 341 KEMTVKTIKKLFRPFGEIDSIRVRGVVAEDSRMSAKVATITKKMHPKVSTVYVYVAFKEE 400
Query: 107 ESVEKALEMNGHVIDEHTIRVDKALTTTKSNSH----SIFIGNIPFEAEEEELRKAFESC 162
+S + AL++NGH + E+T+RVD +TK+ H ++F+GNIPF+ E+E+RK F+SC
Sbjct: 401 QSAKDALKLNGHKLGENTLRVD---LSTKNKDHDQKRAVFLGNIPFDITEDEVRKHFDSC 457
Query: 163 GEIDNVRLIRDQHTNIGKGFGYVNFKAEE 191
G+I++VR+++D+ + + +G GYVNF+ ++
Sbjct: 458 GKIESVRIVKDRKSGLSRGIGYVNFENQD 486
>gi|344278331|ref|XP_003410948.1| PREDICTED: RNA-binding protein 34 [Loxodonta africana]
Length = 433
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 61/135 (45%), Positives = 87/135 (64%), Gaps = 1/135 (0%)
Query: 54 VTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKAL 113
+ S FK YG++E+VRFRS+ A+ TL +K K+H + N+NAYV FK+ + KAL
Sbjct: 204 LKSFFKEYGQIESVRFRSLIPAEGTLSKKLAAIKRKIHPDQKNINAYVVFKDESAATKAL 263
Query: 114 EMNG-HVIDEHTIRVDKALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIR 172
+ NG + D IRVD A T+ + S+F+GN+P++ EE + K F CG + VR++R
Sbjct: 264 KRNGTQIADGFRIRVDLASETSSRDKRSVFVGNLPYKIEESMVEKHFLDCGSVVAVRIVR 323
Query: 173 DQHTNIGKGFGYVNF 187
DQ T +GKGFGYV F
Sbjct: 324 DQVTGVGKGFGYVLF 338
>gi|397508184|ref|XP_003824546.1| PREDICTED: LOW QUALITY PROTEIN: RNA-binding protein 34 [Pan
paniscus]
Length = 459
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 61/135 (45%), Positives = 86/135 (63%), Gaps = 1/135 (0%)
Query: 54 VTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKAL 113
+ S FK YG++E+VRFRS+ A+ TL +K K+H + N+NAYV FK + +AL
Sbjct: 230 LKSFFKEYGQIESVRFRSLIPAEGTLSKKLAAIKRKIHPDQKNINAYVVFKEESAATQAL 289
Query: 114 EMNG-HVIDEHTIRVDKALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIR 172
+ NG + D IRVD A T+ + S+F+GN+P++ EE + K F CG I VR++R
Sbjct: 290 KRNGAQIADGFRIRVDLASETSSRDKRSVFVGNLPYKVEESAVEKHFLDCGSIMAVRIVR 349
Query: 173 DQHTNIGKGFGYVNF 187
D+ T IGKGFGYV F
Sbjct: 350 DKMTGIGKGFGYVLF 364
>gi|332236264|ref|XP_003267324.1| PREDICTED: RNA-binding protein 34 [Nomascus leucogenys]
Length = 430
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 61/135 (45%), Positives = 86/135 (63%), Gaps = 1/135 (0%)
Query: 54 VTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKAL 113
+ S FK YG++E+VRFRS+ A+ TL +K K+H + N+NAYV FK + +AL
Sbjct: 201 LKSFFKEYGQIESVRFRSLIPAEGTLSKKLAAIKRKIHPDQKNINAYVVFKEESAATQAL 260
Query: 114 EMNG-HVIDEHTIRVDKALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIR 172
+ NG + D IRVD A T+ + S+F+GN+P++ EE + K F CG I VR++R
Sbjct: 261 KRNGAQIADGFRIRVDLACETSSRDKRSVFVGNLPYKVEESAVEKHFLDCGSILAVRIVR 320
Query: 173 DQHTNIGKGFGYVNF 187
D+ T IGKGFGYV F
Sbjct: 321 DKMTGIGKGFGYVLF 335
>gi|119590411|gb|EAW70005.1| RNA binding motif protein 34, isoform CRA_a [Homo sapiens]
Length = 459
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 61/135 (45%), Positives = 86/135 (63%), Gaps = 1/135 (0%)
Query: 54 VTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKAL 113
+ S FK YG++E+VRFRS+ A+ TL +K K+H + N+NAYV FK + +AL
Sbjct: 230 LKSFFKEYGQIESVRFRSLIPAEGTLSKKLAAIKRKIHPDQKNINAYVVFKEESAATQAL 289
Query: 114 EMNG-HVIDEHTIRVDKALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIR 172
+ NG + D IRVD A T+ + S+F+GN+P++ EE + K F CG I VR++R
Sbjct: 290 KRNGAQIADGFRIRVDLASETSSRDKRSVFVGNLPYKVEESAIEKHFLDCGSIMAVRIVR 349
Query: 173 DQHTNIGKGFGYVNF 187
D+ T IGKGFGYV F
Sbjct: 350 DKMTGIGKGFGYVLF 364
>gi|238859597|ref|NP_055829.2| RNA-binding protein 34 isoform 1 [Homo sapiens]
gi|57013870|sp|P42696.2|RBM34_HUMAN RecName: Full=RNA-binding protein 34; AltName: Full=RNA-binding
motif protein 34
gi|119590412|gb|EAW70006.1| RNA binding motif protein 34, isoform CRA_b [Homo sapiens]
gi|306921633|dbj|BAJ17896.1| RNA binding motif protein 34 [synthetic construct]
Length = 430
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 61/135 (45%), Positives = 86/135 (63%), Gaps = 1/135 (0%)
Query: 54 VTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKAL 113
+ S FK YG++E+VRFRS+ A+ TL +K K+H + N+NAYV FK + +AL
Sbjct: 201 LKSFFKEYGQIESVRFRSLIPAEGTLSKKLAAIKRKIHPDQKNINAYVVFKEESAATQAL 260
Query: 114 EMNG-HVIDEHTIRVDKALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIR 172
+ NG + D IRVD A T+ + S+F+GN+P++ EE + K F CG I VR++R
Sbjct: 261 KRNGAQIADGFRIRVDLASETSSRDKRSVFVGNLPYKVEESAIEKHFLDCGSIMAVRIVR 320
Query: 173 DQHTNIGKGFGYVNF 187
D+ T IGKGFGYV F
Sbjct: 321 DKMTGIGKGFGYVLF 335
>gi|20809545|gb|AAH29451.1| RNA binding motif protein 34 [Homo sapiens]
gi|312151154|gb|ADQ32089.1| RNA binding motif protein 34 [synthetic construct]
Length = 425
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 61/135 (45%), Positives = 86/135 (63%), Gaps = 1/135 (0%)
Query: 54 VTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKAL 113
+ S FK YG++E+VRFRS+ A+ TL +K K+H + N+NAYV FK + +AL
Sbjct: 196 LKSFFKEYGQIESVRFRSLIPAEGTLSKKLAAIKRKIHPDQKNINAYVVFKEESAATQAL 255
Query: 114 EMNG-HVIDEHTIRVDKALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIR 172
+ NG + D IRVD A T+ + S+F+GN+P++ EE + K F CG I VR++R
Sbjct: 256 KRNGAQIADGFRIRVDLASETSSRDKRSVFVGNLPYKVEESAIEKHFLDCGSIMAVRIVR 315
Query: 173 DQHTNIGKGFGYVNF 187
D+ T IGKGFGYV F
Sbjct: 316 DKMTGIGKGFGYVLF 330
>gi|158258156|dbj|BAF85051.1| unnamed protein product [Homo sapiens]
Length = 425
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 61/135 (45%), Positives = 86/135 (63%), Gaps = 1/135 (0%)
Query: 54 VTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKAL 113
+ S FK YG++E+VRFRS+ A+ TL +K K+H + N+NAYV FK + +AL
Sbjct: 196 LKSFFKEYGQIESVRFRSLIPAEGTLSKKLAAIKRKIHPDQKNINAYVVFKEESAATQAL 255
Query: 114 EMNG-HVIDEHTIRVDKALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIR 172
+ NG + D IRVD A T+ + S+F+GN+P++ EE + K F CG I VR++R
Sbjct: 256 KRNGAQIADGFRIRVDLASETSSRDKRSVFVGNLPYKVEESAIEKHFLDCGSIMAVRIVR 315
Query: 173 DQHTNIGKGFGYVNF 187
D+ T IGKGFGYV F
Sbjct: 316 DKMTGIGKGFGYVLF 330
>gi|332812270|ref|XP_514284.3| PREDICTED: RNA-binding protein 34 isoform 2 [Pan troglodytes]
gi|410225796|gb|JAA10117.1| RNA binding motif protein 34 [Pan troglodytes]
gi|410267564|gb|JAA21748.1| RNA binding motif protein 34 [Pan troglodytes]
gi|410289770|gb|JAA23485.1| RNA binding motif protein 34 [Pan troglodytes]
Length = 430
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 61/135 (45%), Positives = 86/135 (63%), Gaps = 1/135 (0%)
Query: 54 VTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKAL 113
+ S FK YG++E+VRFRS+ A+ TL +K K+H + N+NAYV FK + +AL
Sbjct: 201 LKSFFKEYGQIESVRFRSLIPAEGTLSKKLAAIKRKIHPDQKNINAYVVFKEESAATQAL 260
Query: 114 EMNG-HVIDEHTIRVDKALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIR 172
+ NG + D IRVD A T+ + S+F+GN+P++ EE + K F CG I VR++R
Sbjct: 261 KRNGAQIADGFRIRVDLASETSSRDKRSVFVGNLPYKVEESAVEKHFLDCGSIMAVRIVR 320
Query: 173 DQHTNIGKGFGYVNF 187
D+ T IGKGFGYV F
Sbjct: 321 DKMTGIGKGFGYVLF 335
>gi|432843238|ref|XP_004065582.1| PREDICTED: RNA-binding protein 34-like [Oryzias latipes]
Length = 421
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 61/140 (43%), Positives = 92/140 (65%), Gaps = 4/140 (2%)
Query: 53 SVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKA 112
+V ++FK G +E++RFRS+ D + RK +VH +R +MNAYV FK +A
Sbjct: 176 TVLNLFKDKGSIESIRFRSLVREDPAMSRKLAAIRRQVHPQRKSMNAYVVFKEEAGAIRA 235
Query: 113 LEMNGHVID-EHTIRVDKALTTTKSNSH--SIFIGNIPFEAEEEELRKAFESCGEIDNVR 169
LE NG ++ + IRVD+A T S+ H S+F+GN+PF+ E+ RK FE+CG ++ VR
Sbjct: 236 LESNGMEVETNYNIRVDRA-TDGSSHDHKRSVFVGNLPFDIHEQAFRKHFETCGTVEAVR 294
Query: 170 LIRDQHTNIGKGFGYVNFKA 189
L+RD+ + +GKGFGYV F++
Sbjct: 295 LVRDKDSGLGKGFGYVLFES 314
>gi|354468817|ref|XP_003496847.1| PREDICTED: RNA-binding protein 34-like [Cricetulus griseus]
Length = 425
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 61/135 (45%), Positives = 87/135 (64%), Gaps = 1/135 (0%)
Query: 54 VTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKAL 113
+ S+FK YG++E+VRFRSV A+ TL +K K H + ++NAYV FK+ + KAL
Sbjct: 199 LKSLFKEYGQIESVRFRSVMPAEGTLTKKLAAIKRKFHPDQKSINAYVVFKDESAATKAL 258
Query: 114 EMNGHVIDEH-TIRVDKALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIR 172
+ NG I+E IRVD A TT + S+F+GN+P++ EE L + F CG I VR++R
Sbjct: 259 QRNGAQIEEGFRIRVDLASETTSRDKRSVFVGNLPYKVEEAALEEHFLDCGSIVAVRILR 318
Query: 173 DQHTNIGKGFGYVNF 187
+ T +G+GFGYV F
Sbjct: 319 NPQTGVGRGFGYVLF 333
>gi|443722303|gb|ELU11225.1| hypothetical protein CAPTEDRAFT_227550 [Capitella teleta]
Length = 565
Score = 119 bits (299), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 57/138 (41%), Positives = 86/138 (62%), Gaps = 3/138 (2%)
Query: 54 VTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKAL 113
+ +FK G + ++RFRSV ++ LP++A + HE + NAY+ FK ES KAL
Sbjct: 322 ILKLFKGCGSIASIRFRSVTPSNPKLPKRAALITKDFHESMASFNAYIVFKEQESATKAL 381
Query: 114 EMNGHVIDEHTIRVD---KALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRL 170
++NG +RVD + + S+F+GN+P E +E+E+R F+ CGE++NVRL
Sbjct: 382 KLNGEKFLNFHLRVDSLHPGVKKCHDDKRSVFLGNLPLEVQEDEVRLHFQECGEVENVRL 441
Query: 171 IRDQHTNIGKGFGYVNFK 188
+RD+ T IGKGFG+V FK
Sbjct: 442 VRDRGTGIGKGFGFVLFK 459
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 71/169 (42%), Gaps = 65/169 (38%)
Query: 124 TIRVDKALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVR-------------- 169
+ R K +++ ++FIGNI +AE++++ K F+ CG I ++R
Sbjct: 291 STRPKKRKRDPEADKRTVFIGNISLKAEKKDILKLFKGCGSIASIRFRSVTPSNPKLPKR 350
Query: 170 ---LIRDQHTNIGKGFGYVNFK-------------------------------------- 188
+ +D H ++ Y+ FK
Sbjct: 351 AALITKDFHESMASFNAYIVFKEQESATKALKLNGEKFLNFHLRVDSLHPGVKKCHDDKR 410
Query: 189 ----------AEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK 227
+E+E+R F+ CGE++NVRL+RD+ T IGKGFG+V FK
Sbjct: 411 SVFLGNLPLEVQEDEVRLHFQECGEVENVRLVRDRGTGIGKGFGFVLFK 459
>gi|395728858|ref|XP_003775451.1| PREDICTED: AT-rich interactive domain-containing protein 4B [Pongo
abelii]
Length = 1815
Score = 119 bits (299), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 61/135 (45%), Positives = 86/135 (63%), Gaps = 1/135 (0%)
Query: 54 VTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKAL 113
+ S FK YG++E+VRFRS+ A+ TL +K K+H + N+NAYV FK + +AL
Sbjct: 1586 LKSFFKEYGQIESVRFRSLIPAEGTLSKKLAAIKRKIHPDQKNINAYVVFKEESAATQAL 1645
Query: 114 EMNG-HVIDEHTIRVDKALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIR 172
+ NG + D IRVD A T+ + S+F+GN+P++ EE + K F CG I VR++R
Sbjct: 1646 KRNGAQIADGFRIRVDLASETSSRDKRSVFVGNLPYKVEESAVEKHFLDCGSIMAVRIVR 1705
Query: 173 DQHTNIGKGFGYVNF 187
D+ T IGKGFGYV F
Sbjct: 1706 DKMTGIGKGFGYVLF 1720
>gi|50539824|ref|NP_001002382.1| RNA-binding protein 34 [Danio rerio]
gi|49900339|gb|AAH75875.1| RNA binding motif protein 34 [Danio rerio]
Length = 411
Score = 119 bits (299), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 67/153 (43%), Positives = 94/153 (61%), Gaps = 7/153 (4%)
Query: 41 PSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAY 100
PS K K+ + S+FK G +E+VRFRSV D T+ RK KVH K+ N+NAY
Sbjct: 157 PSSCKKKD-----LLSVFKKSGVIESVRFRSVIREDPTMSRKVAAIQRKVHPKKQNINAY 211
Query: 101 VRFKNLESVEKALEMNGHVIDEH-TIRVDKALTTTKSN-SHSIFIGNIPFEAEEEELRKA 158
+ FK ES AL+ NGH I IRVD+ +K + SIF+GN+P++ E L+
Sbjct: 212 IVFKEEESATDALKWNGHEIQAGFYIRVDRVSQHSKHDHKRSIFVGNLPYDISELPLQNH 271
Query: 159 FESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEE 191
F+ CG I+ VRL+RD+ + +GKGFGYV F++ +
Sbjct: 272 FQECGNIEAVRLVRDRDSGMGKGFGYVLFESPD 304
>gi|301782455|ref|XP_002926642.1| PREDICTED: RNA-binding protein 34-like [Ailuropoda melanoleuca]
Length = 430
Score = 119 bits (299), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 58/135 (42%), Positives = 87/135 (64%), Gaps = 1/135 (0%)
Query: 54 VTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKAL 113
+ S F+ YG++E+VRFRS+ A+ TL +K K+H + N+NAYV FK+ + KAL
Sbjct: 203 LKSFFREYGQIESVRFRSLIPAEGTLSKKLAAIKRKIHPDQKNINAYVVFKDESAATKAL 262
Query: 114 EMNG-HVIDEHTIRVDKALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIR 172
+ NG + D IRVD A T+ + S+F+GN+P++ EE + + F CG I VR++R
Sbjct: 263 KRNGAQIADGFRIRVDLASDTSSRDKRSVFVGNLPYKVEESAVEEHFLDCGSIVAVRIVR 322
Query: 173 DQHTNIGKGFGYVNF 187
D+ T +G+GFGYV F
Sbjct: 323 DRVTGVGRGFGYVLF 337
>gi|281341646|gb|EFB17230.1| hypothetical protein PANDA_016323 [Ailuropoda melanoleuca]
Length = 428
Score = 119 bits (299), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 58/135 (42%), Positives = 87/135 (64%), Gaps = 1/135 (0%)
Query: 54 VTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKAL 113
+ S F+ YG++E+VRFRS+ A+ TL +K K+H + N+NAYV FK+ + KAL
Sbjct: 201 LKSFFREYGQIESVRFRSLIPAEGTLSKKLAAIKRKIHPDQKNINAYVVFKDESAATKAL 260
Query: 114 EMNG-HVIDEHTIRVDKALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIR 172
+ NG + D IRVD A T+ + S+F+GN+P++ EE + + F CG I VR++R
Sbjct: 261 KRNGAQIADGFRIRVDLASDTSSRDKRSVFVGNLPYKVEESAVEEHFLDCGSIVAVRIVR 320
Query: 173 DQHTNIGKGFGYVNF 187
D+ T +G+GFGYV F
Sbjct: 321 DRVTGVGRGFGYVLF 335
>gi|159155220|gb|AAI54771.1| Rbm34 protein [Danio rerio]
Length = 410
Score = 119 bits (299), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 67/153 (43%), Positives = 94/153 (61%), Gaps = 7/153 (4%)
Query: 41 PSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAY 100
PS K K+ + S+FK G +E+VRFRSV D T+ RK KVH K+ N+NAY
Sbjct: 156 PSSCKKKD-----LLSVFKKSGVIESVRFRSVIREDPTMSRKVAAIQRKVHPKKQNINAY 210
Query: 101 VRFKNLESVEKALEMNGHVIDEH-TIRVDKALTTTKSN-SHSIFIGNIPFEAEEEELRKA 158
+ FK ES AL+ NGH I IRVD+ +K + SIF+GN+P++ E L+
Sbjct: 211 IVFKEEESATDALKWNGHEIQAGFYIRVDRVSQHSKHDHKRSIFVGNLPYDISELPLQNH 270
Query: 159 FESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEE 191
F+ CG I+ VRL+RD+ + +GKGFGYV F++ +
Sbjct: 271 FQECGNIEAVRLVRDRDSGMGKGFGYVLFESPD 303
>gi|355715678|gb|AES05401.1| RNA binding motif protein 34 [Mustela putorius furo]
Length = 398
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 59/135 (43%), Positives = 88/135 (65%), Gaps = 1/135 (0%)
Query: 54 VTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKAL 113
+ S F+ YG++E+VRFRS+ A+ TL +K K+H + N+NAYV FK+ + KAL
Sbjct: 171 LKSFFREYGQIESVRFRSLIPAEGTLSKKLAAIKRKIHPDQKNINAYVVFKDKSAATKAL 230
Query: 114 EMNGHVI-DEHTIRVDKALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIR 172
+ NG +I D IRVD A T+ + S+F+GN+P++ EE + + F CG I VR++R
Sbjct: 231 KRNGTLIADGFRIRVDLASETSSRDKRSVFVGNLPYKIEESAVEEHFLDCGSIVAVRIVR 290
Query: 173 DQHTNIGKGFGYVNF 187
D+ T +G+GFGYV F
Sbjct: 291 DRVTGVGRGFGYVLF 305
>gi|324507077|gb|ADY43007.1| RNA-binding protein 34 [Ascaris suum]
Length = 376
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 56/137 (40%), Positives = 88/137 (64%), Gaps = 1/137 (0%)
Query: 53 SVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKA 112
S+ +F YG +E+VR RSV + L +K + N + K +++ YV+F N +SV+ A
Sbjct: 142 SIKKLFSKYGTIESVRLRSVVSDNAKLSKKIAVLKNDLSPKMHSLHFYVKFINADSVKAA 201
Query: 113 LEMNGHVIDEHTIRVDKALTTTKSNSH-SIFIGNIPFEAEEEELRKAFESCGEIDNVRLI 171
L+MNG +D+H +RVD + +S ++FIGN+PF +E++L FE CG++D VR++
Sbjct: 202 LDMNGEKLDDHRLRVDSCASKRNYDSQKTVFIGNVPFGTQEDDLCAHFEKCGDVDFVRIV 261
Query: 172 RDQHTNIGKGFGYVNFK 188
RD+ T IGKG +V FK
Sbjct: 262 RDRATGIGKGIAFVAFK 278
>gi|383872573|ref|NP_001244577.1| RNA-binding protein 34 [Macaca mulatta]
gi|380810788|gb|AFE77269.1| RNA-binding protein 34 isoform 1 [Macaca mulatta]
gi|383416755|gb|AFH31591.1| RNA-binding protein 34 isoform 1 [Macaca mulatta]
Length = 427
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 60/135 (44%), Positives = 85/135 (62%), Gaps = 1/135 (0%)
Query: 54 VTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKAL 113
+ S FK YG++E+VRFRS+ A+ TL +K K+H + N+NAYV FK + +AL
Sbjct: 201 LKSFFKEYGQIESVRFRSLIPAEGTLSKKLAAIKRKIHPDQKNINAYVVFKEESAATQAL 260
Query: 114 EMNG-HVIDEHTIRVDKALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIR 172
+ NG + D IRVD A T+ + S+F+GN+P++ E + K F CG + VR++R
Sbjct: 261 KRNGAQIADGFRIRVDLASETSSRDKRSVFVGNLPYKVAESAVEKHFLDCGSVMAVRIVR 320
Query: 173 DQHTNIGKGFGYVNF 187
DQ T IGKGFGYV F
Sbjct: 321 DQVTGIGKGFGYVLF 335
>gi|351694564|gb|EHA97482.1| RNA-binding protein 34 [Heterocephalus glaber]
Length = 428
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 60/135 (44%), Positives = 85/135 (62%), Gaps = 1/135 (0%)
Query: 54 VTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKAL 113
+ S FK YG++E+VRFRS+ A+ T+ +K K+H + N+NAYV FK + KAL
Sbjct: 199 LKSFFKEYGQIESVRFRSLIPAEGTVSKKLAAIKRKIHPDQKNINAYVVFKEESAATKAL 258
Query: 114 EMNG-HVIDEHTIRVDKALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIR 172
+ NG + D IRVD A T+ + S+FIGN+P++ EE + + F CG I VR++R
Sbjct: 259 KRNGAQIADGFRIRVDLASETSSRDKRSVFIGNLPYKVEETAVEEHFLDCGSIVAVRIVR 318
Query: 173 DQHTNIGKGFGYVNF 187
D T +GKGFGYV F
Sbjct: 319 DPVTGVGKGFGYVLF 333
>gi|346466155|gb|AEO32922.1| hypothetical protein [Amblyomma maculatum]
Length = 502
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 60/138 (43%), Positives = 87/138 (63%), Gaps = 2/138 (1%)
Query: 53 SVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKA 112
++ MF YG +E+VRFRS+ A L +K +H + +NAYV ++ E+V+KA
Sbjct: 249 TLRQMFCQYGPIESVRFRSIVPAREGLSKKVAFLTKSLHSTKQTVNAYVVYREREAVKKA 308
Query: 113 LEMNGHVIDEHTIRVDKALTT--TKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRL 170
L +NG V+ IRVD T S SH++F+GN+P E ++EEL F CG++ +VRL
Sbjct: 309 LALNGTVVLGKHIRVDVVGDTKPQASESHTVFVGNLPHEVQDEELWTFFADCGDVTSVRL 368
Query: 171 IRDQHTNIGKGFGYVNFK 188
IRD+ T +GKGFG+V FK
Sbjct: 369 IRDKGTGMGKGFGFVTFK 386
>gi|410975075|ref|XP_003993961.1| PREDICTED: LOW QUALITY PROTEIN: RNA-binding protein 34 [Felis
catus]
Length = 433
Score = 118 bits (295), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 58/135 (42%), Positives = 85/135 (62%), Gaps = 1/135 (0%)
Query: 54 VTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKAL 113
+ S FK YG++E+VRFRS+ A+ TL +K K+H + N+NAYV FK+ + KAL
Sbjct: 206 LKSFFKEYGQIESVRFRSLIPAEGTLSKKLAAIKRKIHPDQKNINAYVVFKDESAATKAL 265
Query: 114 EMNG-HVIDEHTIRVDKALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIR 172
+ NG D +RVD A T+ + S+F+GN+P++ EE + + F CG I VR++R
Sbjct: 266 KRNGTQFADGFRVRVDLASETSSRDKRSVFVGNLPYKVEESAIEEHFLDCGSIVAVRIVR 325
Query: 173 DQHTNIGKGFGYVNF 187
D T +G+GFGYV F
Sbjct: 326 DPATGVGRGFGYVLF 340
>gi|402858632|ref|XP_003893797.1| PREDICTED: LOW QUALITY PROTEIN: AT-rich interactive domain-containing
protein 4B, partial [Papio anubis]
Length = 1816
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 60/133 (45%), Positives = 84/133 (63%), Gaps = 1/133 (0%)
Query: 56 SMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALEM 115
S FK YG++E+VRFRS+ A+ TL +K K+H + N+NAYV FK + +AL+
Sbjct: 1590 SFFKEYGQIESVRFRSLIPAEGTLSKKLAAIKRKIHPDQKNINAYVVFKEESAATQALKR 1649
Query: 116 NG-HVIDEHTIRVDKALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQ 174
NG + D IRVD A T+ + S+F+GN+P++ E + K F CG + VR++RDQ
Sbjct: 1650 NGAQIADGFRIRVDLASETSSRDKRSVFVGNLPYKVAESAVEKHFLDCGSVMAVRIVRDQ 1709
Query: 175 HTNIGKGFGYVNF 187
T IGKGFGYV F
Sbjct: 1710 VTGIGKGFGYVLF 1722
>gi|410917640|ref|XP_003972294.1| PREDICTED: RNA-binding protein 34-like [Takifugu rubripes]
Length = 399
Score = 117 bits (294), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 58/141 (41%), Positives = 93/141 (65%), Gaps = 2/141 (1%)
Query: 53 SVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKA 112
++ ++F+ G +E++RFRSV D ++ RK + K+H K+ +MNAYV FK+ V +A
Sbjct: 162 TLQNLFRDEGSIESIRFRSVVREDPSMSRKVAVIKRKIHPKKQSMNAYVVFKDEGGVTRA 221
Query: 113 LEMNGHVIDEH-TIRVDKAL-TTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRL 170
LE NG I++ IRVDK + ++ + S+F+GN+ F+ E R FE CG ++ VRL
Sbjct: 222 LERNGLEIEKDFYIRVDKVVKNSSHDHKRSVFVGNLSFDINELAFRHHFEDCGSVEAVRL 281
Query: 171 IRDQHTNIGKGFGYVNFKAEE 191
+RDQ++ +GKGFGY+ FK+ +
Sbjct: 282 VRDQNSGLGKGFGYILFKSAD 302
>gi|340714141|ref|XP_003395590.1| PREDICTED: hypothetical protein LOC100644519 [Bombus terrestris]
Length = 628
Score = 117 bits (294), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 56/140 (40%), Positives = 90/140 (64%), Gaps = 8/140 (5%)
Query: 57 MFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMN 116
+FK +G+++ +R R + +P++ N +H K ++ AY+RF++ ES +KAL +N
Sbjct: 361 LFKQFGKIDAIRLRGKISKSLNIPKRVAAITNDLHPKMKSVYAYIRFESEESTKKALSIN 420
Query: 117 GHVIDEHTIRVDKALTTTKSNSH-----SIFIGNIPFEAEEEELRKAFESCGEIDNVRLI 171
G + + +RVD +TKSN S+FIGN+ F +++ +R F+ CGEI +VR+I
Sbjct: 421 GTKFEGNYVRVD---MSTKSNDKYETKKSVFIGNLHFNVDDDSVRNHFKRCGEIQSVRII 477
Query: 172 RDQHTNIGKGFGYVNFKAEE 191
RD T +GKGFGYVNFK+E+
Sbjct: 478 RDNQTGVGKGFGYVNFKSED 497
Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 68/164 (41%), Gaps = 64/164 (39%)
Query: 128 DKALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRL----------------- 170
D +L K N +IF+GN+P + +++L+K F+ G+ID +RL
Sbjct: 331 DSSLEDFKENERTIFVGNLPKDVTKKQLQKLFKQFGKIDAIRLRGKISKSLNIPKRVAAI 390
Query: 171 IRDQHTNIGKGFGYVNFKAEE--------------------------------------- 191
D H + + Y+ F++EE
Sbjct: 391 TNDLHPKMKSVYAYIRFESEESTKKALSINGTKFEGNYVRVDMSTKSNDKYETKKSVFIG 450
Query: 192 --------EELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK 227
+ +R F+ CGEI +VR+IRD T +GKGFGYVNFK
Sbjct: 451 NLHFNVDDDSVRNHFKRCGEIQSVRIIRDNQTGVGKGFGYVNFK 494
>gi|213402043|ref|XP_002171794.1| nucleolar protein [Schizosaccharomyces japonicus yFS275]
gi|211999841|gb|EEB05501.1| nucleolar protein [Schizosaccharomyces japonicus yFS275]
Length = 437
Score = 117 bits (294), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 68/172 (39%), Positives = 105/172 (61%), Gaps = 13/172 (7%)
Query: 22 SKLKVFLNIWKMALKLKMNPSLTKS-KNHALSSVTSMFKPYGEVETVRFRSVPVADITLP 80
S+ VF+N + K+ + LTKS K H F YG+V++VRFRS+ +++ +P
Sbjct: 176 SERTVFVN--NLPAKIVTDKKLTKSLKKH--------FSQYGKVQSVRFRSIAFSEV-IP 224
Query: 81 RKACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDK-ALTTTKSNSH 139
RKA K H++R ++NAYV F+ ++ +A+++NG + +RVD + + N
Sbjct: 225 RKAAFIEKKFHDERDSVNAYVVFETSKAAREAVKLNGTMFLNRHLRVDHISHPAPQVNKR 284
Query: 140 SIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEE 191
+F+GN+ FEAEEE L FE CG ++ VR+IRD TN+GKGF YV F++ E
Sbjct: 285 CVFVGNLAFEAEEEPLWCYFEPCGPVEYVRIIRDPKTNLGKGFAYVQFQSAE 336
>gi|350417503|ref|XP_003491454.1| PREDICTED: hypothetical protein LOC100748299 [Bombus impatiens]
Length = 622
Score = 117 bits (294), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 56/140 (40%), Positives = 91/140 (65%), Gaps = 8/140 (5%)
Query: 57 MFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMN 116
+FK +G+++ +R R + +P++ N++H K ++ AY+RF++ ES +KAL +N
Sbjct: 361 LFKQFGKIDAIRLRGKISKSLNIPKRVAAITNELHPKMKSVYAYIRFESEESTKKALSVN 420
Query: 117 GHVIDEHTIRVDKALTTTKSNSH-----SIFIGNIPFEAEEEELRKAFESCGEIDNVRLI 171
G + + IRVD ++ KSN S+FIGN+ F +++ +R F+ CGEI +VR+I
Sbjct: 421 GRKFEGNYIRVDMSM---KSNDRYETKKSVFIGNLHFNVDDDSVRNHFKRCGEIQSVRII 477
Query: 172 RDQHTNIGKGFGYVNFKAEE 191
RD T +GKGFGYVNFK+E+
Sbjct: 478 RDNQTGVGKGFGYVNFKSED 497
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 68/164 (41%), Gaps = 64/164 (39%)
Query: 128 DKALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRL----------------- 170
D +L K N +IF+GN+P + +++L+K F+ G+ID +RL
Sbjct: 331 DSSLEDFKENERTIFVGNLPKDVTKKQLQKLFKQFGKIDAIRLRGKISKSLNIPKRVAAI 390
Query: 171 IRDQHTNIGKGFGYVNFKAEE--------------------------------------- 191
+ H + + Y+ F++EE
Sbjct: 391 TNELHPKMKSVYAYIRFESEESTKKALSVNGRKFEGNYIRVDMSMKSNDRYETKKSVFIG 450
Query: 192 --------EELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK 227
+ +R F+ CGEI +VR+IRD T +GKGFGYVNFK
Sbjct: 451 NLHFNVDDDSVRNHFKRCGEIQSVRIIRDNQTGVGKGFGYVNFK 494
>gi|348538194|ref|XP_003456577.1| PREDICTED: RNA-binding protein 34-like [Oreochromis niloticus]
Length = 425
Score = 117 bits (293), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 60/140 (42%), Positives = 95/140 (67%), Gaps = 4/140 (2%)
Query: 53 SVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKA 112
++ S+F+ G +E++RFRSV D ++ RK KVH K+ ++NAYV FK+ + V KA
Sbjct: 175 TLRSLFRDKGSIESIRFRSVVREDPSMSRKVAAIKRKVHPKKQSINAYVVFKDEDGVTKA 234
Query: 113 LEMNGHVIDEH-TIRVDKALTTTKSNSH--SIFIGNIPFEAEEEELRKAFESCGEIDNVR 169
LE NG +++ IRVD+ +T + S+ H S+F+GN+ F+ E R+ FE CG ++ VR
Sbjct: 235 LERNGMEMEKDFHIRVDR-VTDSSSHDHKRSVFVGNLSFDINELTFRRHFEECGTVEAVR 293
Query: 170 LIRDQHTNIGKGFGYVNFKA 189
L+RD+++ +GKGFGYV F++
Sbjct: 294 LVRDKNSGLGKGFGYVLFES 313
>gi|426255548|ref|XP_004021410.1| PREDICTED: RNA-binding protein 34 [Ovis aries]
Length = 427
Score = 117 bits (292), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 57/128 (44%), Positives = 83/128 (64%), Gaps = 1/128 (0%)
Query: 61 YGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVI 120
YG++E+VRFRS+ A+ TL +K K+H + N+NAYV FK+ + KALE NG
Sbjct: 207 YGQIESVRFRSLIPAEGTLSKKLAAIKRKIHPDQKNINAYVVFKDENAATKALERNGAQF 266
Query: 121 DEH-TIRVDKALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIG 179
E +RVD A T+ + S+F+GN+P++ EE + K F +CG + VR++RDQ T +G
Sbjct: 267 AEGFRVRVDLATETSSRDKRSVFVGNLPYKVEESAVEKHFLACGNVVAVRIVRDQVTGVG 326
Query: 180 KGFGYVNF 187
+GFGYV F
Sbjct: 327 RGFGYVLF 334
>gi|348575610|ref|XP_003473581.1| PREDICTED: RNA-binding protein 34-like [Cavia porcellus]
Length = 430
Score = 117 bits (292), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 60/135 (44%), Positives = 88/135 (65%), Gaps = 1/135 (0%)
Query: 54 VTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKAL 113
+ S FK YG++E+VRFRS+ A+ T+ +K K+H + N+NAYV FKN + KAL
Sbjct: 200 LKSFFKEYGQIESVRFRSLIPAEGTVSKKLAAIKRKIHPDQKNINAYVVFKNESAATKAL 259
Query: 114 EMNG-HVIDEHTIRVDKALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIR 172
+ NG + D IRVD A ++ + S+F+GN+P++ EE +++ F CG I VRL+R
Sbjct: 260 KSNGAEIADGFHIRVDLASKSSSRDKRSVFVGNLPYKVEETAVKEHFLDCGSIVAVRLVR 319
Query: 173 DQHTNIGKGFGYVNF 187
D+ T +GKGFGYV F
Sbjct: 320 DRVTGVGKGFGYVLF 334
>gi|340384626|ref|XP_003390812.1| PREDICTED: nucleolar protein 12-like, partial [Amphimedon
queenslandica]
Length = 224
Score = 117 bits (292), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 62/136 (45%), Positives = 84/136 (61%), Gaps = 4/136 (2%)
Query: 54 VTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKAL 113
+ + P+G VE++R RSV V+ LP + K+ K T N YV + ES L
Sbjct: 3 ILKLVSPFGPVESLRQRSVAVSPGKLPVEVARKLGK-QLTGTTTNFYVVMETEESASACL 61
Query: 114 EMNGHVIDEHTIRVDKALTTTKSNSH-SIFIGNIPFEAEEEELRKAFESCGEIDNVRLIR 172
E+NG +D IRVD L T +++H S+F+GN+PF A+EE+LRK FESCG ID +R+I+
Sbjct: 62 ELNGREVDGRHIRVD--LATPTNDTHCSVFVGNVPFGADEEKLRKVFESCGPIDGIRIIK 119
Query: 173 DQHTNIGKGFGYVNFK 188
D T I KGF YV FK
Sbjct: 120 DTRTGINKGFAYVKFK 135
>gi|194206109|ref|XP_001915106.1| PREDICTED: RNA-binding protein 34 [Equus caballus]
Length = 428
Score = 117 bits (292), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 58/135 (42%), Positives = 85/135 (62%), Gaps = 1/135 (0%)
Query: 54 VTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKAL 113
+ S FK YG++E+VRFRS+ A+ T +K +H + N+NAYV FK+ + KAL
Sbjct: 201 LKSFFKEYGQIESVRFRSLIPAEGTRSKKLAAIKRTIHPNQKNINAYVVFKDDSAAAKAL 260
Query: 114 EMNG-HVIDEHTIRVDKALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIR 172
+ NG + D IRVD A T+ + S+F+GN+P++ EE + + F CG I VR++R
Sbjct: 261 KRNGAQIADGFRIRVDLASETSSRDKRSVFVGNLPYKVEESAVEEHFLDCGHIVAVRIVR 320
Query: 173 DQHTNIGKGFGYVNF 187
DQ T +G+GFGYV F
Sbjct: 321 DQVTGVGRGFGYVLF 335
>gi|50555293|ref|XP_505055.1| YALI0F05918p [Yarrowia lipolytica]
gi|74689345|sp|Q6C2Q7.1|NOP12_YARLI RecName: Full=Nucleolar protein 12
gi|49650925|emb|CAG77862.1| YALI0F05918p [Yarrowia lipolytica CLIB122]
Length = 509
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 58/134 (43%), Positives = 85/134 (63%), Gaps = 2/134 (1%)
Query: 56 SMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALEM 115
++F G V +VRFRS+ + + LPRK + H KR +NAY+ FKN++SV+ AL +
Sbjct: 191 ALFAAIGTVASVRFRSISFSKL-LPRKVAFISQQFHSKRDTVNAYIVFKNVKSVKGALTL 249
Query: 116 NGHVIDEHTIRVDK-ALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQ 174
NG V +RVD A + + +F+G + FE +EE L +AF SCG+++ VR++RD
Sbjct: 250 NGSVFKGFHMRVDSVAHPGAQDHKRCVFVGALDFEEQEESLWEAFSSCGDVEYVRIVRDP 309
Query: 175 HTNIGKGFGYVNFK 188
TN+GKGF YV FK
Sbjct: 310 KTNVGKGFAYVQFK 323
>gi|345798762|ref|XP_536341.3| PREDICTED: RNA-binding protein 34 [Canis lupus familiaris]
Length = 428
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 57/135 (42%), Positives = 86/135 (63%), Gaps = 1/135 (0%)
Query: 54 VTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKAL 113
+ S F+ YG++++VRFRS+ A+ TL +K K+H + +NAYV FK+ S KAL
Sbjct: 200 LKSFFREYGQIDSVRFRSLIPAEGTLSKKLAAIKRKIHPDQKYINAYVVFKDESSATKAL 259
Query: 114 EMNG-HVIDEHTIRVDKALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIR 172
+ NG + D IRVD A T+ + S+F+GN+P++ EE + + F CG I VR++R
Sbjct: 260 KRNGAQIADGFRIRVDLASETSSRDKRSVFVGNLPYKVEESAVEEHFLDCGSIVAVRIVR 319
Query: 173 DQHTNIGKGFGYVNF 187
D+ T +G+GFGYV F
Sbjct: 320 DRVTGVGRGFGYVLF 334
>gi|340383699|ref|XP_003390354.1| PREDICTED: RNA-binding protein 34-like [Amphimedon queenslandica]
Length = 305
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 65/149 (43%), Positives = 88/149 (59%), Gaps = 9/149 (6%)
Query: 41 PSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAY 100
P TK K+ + + P+G VE++R RSV V+ LP + K+ K T N Y
Sbjct: 67 PLSTKKKD-----ILKLVSPFGPVESLRQRSVVVSPGKLPVEVARKLGK-QLTGTTTNFY 120
Query: 101 VRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKSNSH-SIFIGNIPFEAEEEELRKAF 159
V + ES LE+NG +D IRVD L T +++H S+F+GN+PF +EE+LRK F
Sbjct: 121 VVMETEESASACLELNGREVDGRHIRVD--LATPTNDTHCSVFVGNVPFGTDEEKLRKVF 178
Query: 160 ESCGEIDNVRLIRDQHTNIGKGFGYVNFK 188
ESCG ID +R+I+D T I KGF YV FK
Sbjct: 179 ESCGPIDGIRIIKDTRTGINKGFAYVKFK 207
>gi|417410496|gb|JAA51720.1| Putative splicing factor, partial [Desmodus rotundus]
Length = 412
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 57/135 (42%), Positives = 83/135 (61%), Gaps = 1/135 (0%)
Query: 54 VTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKAL 113
+ S FK YG +E+VRFRSV A+ T+ +K + K+H + N+NAYV FK+ + KAL
Sbjct: 185 LKSFFKEYGPIESVRFRSVIPAEGTMSKKLAVIKRKIHPDQKNINAYVVFKDERAATKAL 244
Query: 114 EMNG-HVIDEHTIRVDKALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIR 172
NG + D +RVD A T+ + S+F+GN+P++ E + F CG I VR++R
Sbjct: 245 NRNGAQIADGFRVRVDLASETSSRDKRSVFVGNLPYKVGESAVEHHFLDCGNIVAVRIVR 304
Query: 173 DQHTNIGKGFGYVNF 187
D T +G+GFGYV F
Sbjct: 305 DPLTGVGRGFGYVLF 319
>gi|146331996|gb|ABQ22504.1| RNA-binding protein 34-like protein [Callithrix jacchus]
Length = 220
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 57/126 (45%), Positives = 81/126 (64%), Gaps = 1/126 (0%)
Query: 63 EVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNG-HVID 121
++E+VRFRS+ A+ TL +K K+H + N+NAYV FK+ + +AL+ NG + D
Sbjct: 1 QIESVRFRSLIPAEGTLSKKLAAIKRKIHPDQKNINAYVVFKDGSAATQALKRNGAQIAD 60
Query: 122 EHTIRVDKALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKG 181
IRVD A T+ + S+F+GN+P++ EE + K F CG I VR++RDQ T IGKG
Sbjct: 61 GFRIRVDLASATSSRDKRSVFVGNLPYKVEESAVEKHFLDCGSIMAVRIVRDQVTGIGKG 120
Query: 182 FGYVNF 187
FGYV F
Sbjct: 121 FGYVLF 126
>gi|76363311|sp|Q8C5L7.1|RBM34_MOUSE RecName: Full=RNA-binding protein 34; AltName: Full=RNA-binding
motif protein 34
gi|26346951|dbj|BAC37124.1| unnamed protein product [Mus musculus]
Length = 375
Score = 114 bits (286), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 60/133 (45%), Positives = 83/133 (62%), Gaps = 1/133 (0%)
Query: 56 SMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALEM 115
S FK YG+VE+VRFRSV A+ TL +K K H + ++NAYV FK+ + KAL+
Sbjct: 207 SFFKEYGQVESVRFRSVMPAEGTLTKKLAAIKRKFHPDQKSINAYVVFKDESAAAKALQR 266
Query: 116 NGHVIDEH-TIRVDKALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQ 174
NG I E IRVD A T + S+F+GN+P++ E+ L + F CG I VR++R+
Sbjct: 267 NGAQIAEGFRIRVDLASETASRDKRSVFVGNLPYKIEDSALEEHFLDCGSIVAVRIVRNP 326
Query: 175 HTNIGKGFGYVNF 187
T +G+GFGYV F
Sbjct: 327 LTGVGRGFGYVLF 339
>gi|42794007|ref|NP_766350.2| RNA-binding protein 34 [Mus musculus]
gi|148679875|gb|EDL11822.1| RNA binding motif protein 34, isoform CRA_a [Mus musculus]
gi|187954471|gb|AAI41279.1| RNA binding motif protein 34 [Mus musculus]
Length = 442
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 60/135 (44%), Positives = 84/135 (62%), Gaps = 1/135 (0%)
Query: 54 VTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKAL 113
+ S FK YG+VE+VRFRSV A+ TL +K K H + ++NAYV FK+ + KAL
Sbjct: 205 LKSFFKEYGQVESVRFRSVMPAEGTLTKKLAAIKRKFHPDQKSINAYVVFKDESAAAKAL 264
Query: 114 EMNGHVIDEH-TIRVDKALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIR 172
+ NG I E IRVD A T + S+F+GN+P++ E+ L + F CG I VR++R
Sbjct: 265 QRNGAQIAEGFRIRVDLASETASRDKRSVFVGNLPYKIEDSALEEHFLDCGSIVAVRIVR 324
Query: 173 DQHTNIGKGFGYVNF 187
+ T +G+GFGYV F
Sbjct: 325 NPLTGVGRGFGYVLF 339
>gi|357485153|ref|XP_003612864.1| RNA-binding protein [Medicago truncatula]
gi|355514199|gb|AES95822.1| RNA-binding protein [Medicago truncatula]
Length = 518
Score = 114 bits (285), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 61/153 (39%), Positives = 87/153 (56%), Gaps = 18/153 (11%)
Query: 58 FKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNG 117
FK +GEVE+VR RSVP+ D PRK I K+ E ++NAY+ FK ES + +L N
Sbjct: 206 FKVFGEVESVRIRSVPLQDTKKPRKGAILAKKISETAESVNAYIVFKTEESAQASLSHNM 265
Query: 118 HVIDEHTIRVDKALTTTK----------SNSHSIFIGNIPFEAEEEELRKAFESCG---- 163
V+D + IRVD+A K N ++F+GN+PF+ ++EEL + F CG
Sbjct: 266 TVVDGNHIRVDRACPPRKKLKGDSAPLYDNKRTVFVGNLPFDVKDEELYQLF--CGIPSL 323
Query: 164 --EIDNVRLIRDQHTNIGKGFGYVNFKAEEEEL 194
I+ +R++RD H N+GKG Y FK + L
Sbjct: 324 ESSIEAIRVVRDPHLNVGKGIAYALFKTRDAAL 356
>gi|345326998|ref|XP_001512144.2| PREDICTED: RNA-binding protein 34-like [Ornithorhynchus anatinus]
Length = 416
Score = 114 bits (284), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 61/134 (45%), Positives = 85/134 (63%), Gaps = 3/134 (2%)
Query: 56 SMFKPYGEVETVRFRSV-PVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALE 114
S+FK YG +E+VRFRSV P I+ + A IK K H ++ N+NAYV FK S KAL+
Sbjct: 191 SIFKEYGPIESVRFRSVIPAEGISTKKLAAIK-RKFHPEQKNINAYVVFKKESSAAKALK 249
Query: 115 MNG-HVIDEHTIRVDKALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRD 173
NG + D IRVD A T+ + S+F+GN+ ++ EE +++ F CG++ VR++RD
Sbjct: 250 RNGTQISDGFRIRVDLASETSSRDKRSVFVGNLAYKIEEASVQEHFSDCGQVVAVRIVRD 309
Query: 174 QHTNIGKGFGYVNF 187
T GKGFGYV F
Sbjct: 310 GVTGAGKGFGYVLF 323
>gi|62078761|ref|NP_001014037.1| RNA-binding protein 34 [Rattus norvegicus]
gi|76363312|sp|Q5M9F1.1|RBM34_RAT RecName: Full=RNA-binding protein 34; AltName: Full=RNA-binding
motif protein 34
gi|56541178|gb|AAH87155.1| RNA binding motif protein 34 [Rattus norvegicus]
gi|149043245|gb|EDL96777.1| RNA binding motif protein 34 [Rattus norvegicus]
Length = 428
Score = 113 bits (283), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 60/135 (44%), Positives = 82/135 (60%), Gaps = 1/135 (0%)
Query: 54 VTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKAL 113
+ S FK YG+VE+VRFRSV A+ TL +K K H + ++NAYV FK + KAL
Sbjct: 199 LKSFFKEYGQVESVRFRSVMPAEGTLSKKLAAIKRKFHPDQKSINAYVVFKEERAAAKAL 258
Query: 114 EMNGHVIDEH-TIRVDKALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIR 172
+ NG I E IRVD A T + S+F+GN+P+ +E L + F CG I VR++R
Sbjct: 259 QRNGAQIAEGFRIRVDLASETASRDKRSVFVGNLPYRVDESALEEHFLDCGSIVAVRIVR 318
Query: 173 DQHTNIGKGFGYVNF 187
+ T +G+GFGYV F
Sbjct: 319 NPLTGVGRGFGYVLF 333
>gi|432106224|gb|ELK32110.1| AT-rich interactive domain-containing protein 4B [Myotis davidii]
Length = 1743
Score = 112 bits (281), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 57/135 (42%), Positives = 83/135 (61%), Gaps = 1/135 (0%)
Query: 54 VTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKAL 113
+ S FK YG +E+VRFRSV A+ T+ +K K+H + N+NAYV FK+ + KAL
Sbjct: 1516 LKSFFKEYGPIESVRFRSVIPAEGTMSKKLAAIKRKIHPDQKNINAYVVFKDESAATKAL 1575
Query: 114 EMNG-HVIDEHTIRVDKALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIR 172
NG + D +RVD A T+ + S+F+GN+P++ E+ + F CG I VR++R
Sbjct: 1576 NRNGTQIADGFRVRVDLASETSSRDKRSVFVGNLPYKIEDAVVEDHFLDCGNIVAVRIVR 1635
Query: 173 DQHTNIGKGFGYVNF 187
D T +G+GFGYV F
Sbjct: 1636 DPLTGVGRGFGYVLF 1650
>gi|367017858|ref|XP_003683427.1| hypothetical protein TDEL_0H03570 [Torulaspora delbrueckii]
gi|359751091|emb|CCE94216.1| hypothetical protein TDEL_0H03570 [Torulaspora delbrueckii]
Length = 419
Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 57/127 (44%), Positives = 82/127 (64%), Gaps = 3/127 (2%)
Query: 64 VETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKAL-EMNGHVIDE 122
+E++RFRS+ D LPRK K+H+ R ++NAYV +K+ +V+KA ++NGHV +
Sbjct: 172 IESIRFRSISF-DEALPRKVAFVQQKLHKSRESVNAYVVYKDKGAVKKACAKLNGHVFLQ 230
Query: 123 HTIRVDKAL-TTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKG 181
+RVD N SIF+GN+ FE ++E L F+ CGEI+ VRL+RD TN+GKG
Sbjct: 231 RHLRVDSVTHPAVHENKRSIFVGNLDFEEDDESLWLHFKDCGEIEYVRLVRDAKTNMGKG 290
Query: 182 FGYVNFK 188
F Y+ FK
Sbjct: 291 FAYIQFK 297
>gi|156839965|ref|XP_001643668.1| hypothetical protein Kpol_1040p23 [Vanderwaltozyma polyspora DSM
70294]
gi|156114288|gb|EDO15810.1| hypothetical protein Kpol_1040p23 [Vanderwaltozyma polyspora DSM
70294]
Length = 467
Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 58/127 (45%), Positives = 79/127 (62%), Gaps = 3/127 (2%)
Query: 64 VETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEK-ALEMNGHVIDE 122
+ET+RFRS+ D LPRK K+H+ R ++NAY+ +K SV ++NG V +
Sbjct: 219 IETIRFRSISF-DEALPRKVAFVQQKLHKSRNSINAYIVYKEKSSVNPICTKLNGTVFQK 277
Query: 123 HTIRVDKALT-TTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKG 181
+ +RVD N SIF+GN+ FE +EE L FESCGEI+ VR+IRD TN+GKG
Sbjct: 278 NHLRVDSVSNPAAHENKRSIFVGNMDFEQDEETLWSHFESCGEIEYVRIIRDSKTNLGKG 337
Query: 182 FGYVNFK 188
F Y+ FK
Sbjct: 338 FAYIQFK 344
>gi|427796107|gb|JAA63505.1| Putative transcriptional coactivator caper rrm superfamily, partial
[Rhipicephalus pulchellus]
Length = 505
Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 58/138 (42%), Positives = 86/138 (62%), Gaps = 2/138 (1%)
Query: 53 SVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKA 112
+V +F YG +E++RFRS+ A +L +K +H + +NAYV FK E+V KA
Sbjct: 254 AVRHVFSKYGTIESIRFRSIVPAKESLSKKVAFISKALHSNKQTVNAYVVFKAKEAVNKA 313
Query: 113 LEMNGHVIDEHTIRVD--KALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRL 170
L +NG V+ + IRVD A + S ++F+GN+ E ++EEL K F CG++ VRL
Sbjct: 314 LSLNGGVLFGNHIRVDCVGAPKSQVSEKQTVFVGNLAHEVQDEELWKLFAECGDVVAVRL 373
Query: 171 IRDQHTNIGKGFGYVNFK 188
+RD+ T +GKGFG+V FK
Sbjct: 374 VRDKVTGMGKGFGFVTFK 391
>gi|254581390|ref|XP_002496680.1| ZYRO0D05654p [Zygosaccharomyces rouxii]
gi|238939572|emb|CAR27747.1| ZYRO0D05654p [Zygosaccharomyces rouxii]
Length = 441
Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 59/134 (44%), Positives = 83/134 (61%), Gaps = 3/134 (2%)
Query: 57 MFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKAL-EM 115
+F+ +E++RFRS+ ++ LPRK K+H+ R ++NAYV +KN SV +
Sbjct: 186 LFQDEKGLESIRFRSISF-EVPLPRKVAFVQQKLHKSRGSVNAYVVYKNKNSVSSVCSRL 244
Query: 116 NGHVIDEHTIRVDKALTTTK-SNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQ 174
NG V + +RVD K N S+F+GN+ FE +EE L + F SCGEI+ VR+IRD
Sbjct: 245 NGQVFVDRHLRVDSVTHPAKHDNKRSVFVGNLDFEEDEESLWRHFGSCGEIEYVRIIRDP 304
Query: 175 HTNIGKGFGYVNFK 188
TN+GKGF YV FK
Sbjct: 305 KTNMGKGFAYVQFK 318
>gi|365982827|ref|XP_003668247.1| hypothetical protein NDAI_0A08510 [Naumovozyma dairenensis CBS 421]
gi|343767013|emb|CCD23004.1| hypothetical protein NDAI_0A08510 [Naumovozyma dairenensis CBS 421]
Length = 474
Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 59/127 (46%), Positives = 80/127 (62%), Gaps = 3/127 (2%)
Query: 64 VETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEK-ALEMNGHVIDE 122
+E++RFRS+ D LPRK K+H+ R ++NAY+ +KN V+ E+NG V
Sbjct: 223 IESIRFRSISF-DEALPRKVAFVQQKLHKSRDSVNAYIVYKNKNIVKTICSELNGTVFHN 281
Query: 123 HTIRVDK-ALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKG 181
H +RVD A + + SIF+GN+ FE EE L F+SCGEI+ VR+IRD TN+GKG
Sbjct: 282 HHLRVDSVAHPSAQDKKRSIFVGNLDFEEAEESLWNHFKSCGEIEYVRIIRDAKTNMGKG 341
Query: 182 FGYVNFK 188
F YV FK
Sbjct: 342 FAYVQFK 348
>gi|299470988|emb|CBN78849.2| white-brown-complex ABC transporter family (Partial) [Ectocarpus
siliculosus]
Length = 777
Score = 111 bits (278), Expect = 2e-22, Method: Composition-based stats.
Identities = 63/146 (43%), Positives = 90/146 (61%), Gaps = 14/146 (9%)
Query: 54 VTSMFKPYGEVETVRFRSVPV--------ADITLPRKACIKMNKVHEK-RTNMNAYVRFK 104
V + FK YG VE+VR RSV V D L RK C+ V E+ ++++NAYV +K
Sbjct: 346 VKAAFKEYGAVESVRLRSVAVQGMAVDKAGDQQLVRKVCVNRGMVDEEVKSSVNAYVVYK 405
Query: 105 NLESVEKALEMNGHVIDEHTIRVDKALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGE 164
+ SVEKAL NG + +RVD+A + ++ S+F+GN+P +A EEE+R+ F S E
Sbjct: 406 DCASVEKALAANGTDVGGKHVRVDRAKSGEYDHTRSVFLGNLPMDAGEEEVRELFASKLE 465
Query: 165 -----IDNVRLIRDQHTNIGKGFGYV 185
++ VRL+RD+ T +GKGFGYV
Sbjct: 466 GGPKSVEGVRLVRDKATLVGKGFGYV 491
>gi|430813955|emb|CCJ28747.1| unnamed protein product [Pneumocystis jirovecii]
Length = 364
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 58/137 (42%), Positives = 84/137 (61%), Gaps = 2/137 (1%)
Query: 56 SMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALEM 115
+ F +G+++++RFRS+ + LP+K K H KR +NAY+ ++ ES + AL +
Sbjct: 138 TKFLEFGKIKSIRFRSIAFSTF-LPKKIAYIQKKFHTKRDLLNAYIVYETQESSKNALAL 196
Query: 116 NGHVIDEHTIRVDK-ALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQ 174
NG V + +RVD A SIFIGN+ F+A+EE+L F CGEI+ VR++RD
Sbjct: 197 NGVVFLDRHLRVDSVAYPAPHVPKRSIFIGNLSFDAQEEQLWSYFAHCGEIEFVRIVRDN 256
Query: 175 HTNIGKGFGYVNFKAEE 191
TN+GKGF YV FK E
Sbjct: 257 KTNLGKGFAYVQFKDRE 273
>gi|356496350|ref|XP_003517031.1| PREDICTED: nucleolar protein 12-like [Glycine max]
Length = 515
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 58/150 (38%), Positives = 89/150 (59%), Gaps = 18/150 (12%)
Query: 58 FKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNG 117
FK +GEVE+VR RSVP+ D PRK I K+++ +++AY+ FK +S + +L N
Sbjct: 209 FKKFGEVESVRIRSVPIQDTKKPRKGAILAKKINDAADSVHAYIVFKTEQSAQASLAHNM 268
Query: 118 HVIDEHTIRVDKALTTTK----------SNSHSIFIGNIPFEAEEEELRKAFESCG---- 163
+++ + IRVD+A K N ++F+GN+PF+ ++EEL K F CG
Sbjct: 269 SLVEGNHIRVDRACPPRKKHKGESTPLYDNKRTVFVGNLPFDVKDEELYKLF--CGISNL 326
Query: 164 --EIDNVRLIRDQHTNIGKGFGYVNFKAEE 191
I+ +R++RD H N+GKG YV FK +E
Sbjct: 327 ESSIEAIRVVRDPHLNVGKGIAYVLFKTKE 356
>gi|145482073|ref|XP_001427059.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124394138|emb|CAK59661.1| unnamed protein product [Paramecium tetraurelia]
Length = 347
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 60/160 (37%), Positives = 95/160 (59%), Gaps = 8/160 (5%)
Query: 48 NHALSSVTSMFKPYGEVETVRFRSVPV------ADITLPRKACIKMNKVHEKRTNMNAYV 101
N + + +F YGE+E V FRS+PV ++ LP +A + M K+ E + N Y+
Sbjct: 76 NAKKNDMRKLFTQYGEIEKVWFRSIPVDRKTKKENVKLPVRAAVLMGKIQEGAQSQNCYI 135
Query: 102 RFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKSNSHSIFIGNIPFEAEEEELRKAFES 161
FK+++S + A + +G + +R K + + F+GN+PF+ EEEE+RKAFE
Sbjct: 136 LFKDVKSAKSATQQDGQLFMNLHLRCTLEGQKKKDHIKTAFVGNLPFDIEEEEVRKAFEE 195
Query: 162 C-GEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFES 200
GEI+ VR+I+D ++GKGFGYV F E + L+KA ++
Sbjct: 196 AFGEINYVRVIKDPQRHVGKGFGYVCFN-EFQSLKKALQA 234
>gi|390363636|ref|XP_781943.2| PREDICTED: uncharacterized protein LOC576551 [Strongylocentrotus
purpuratus]
Length = 394
Score = 109 bits (273), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 53/135 (39%), Positives = 86/135 (63%), Gaps = 1/135 (0%)
Query: 54 VTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKAL 113
+ +FK YG +E++RFRS+ AD ++ +K +++ K+T+ NAY+ F+ + AL
Sbjct: 168 LKGLFKIYGAIESMRFRSMGAADPSMSKKVAAIKQELNPKKTSFNAYIVFEEEQCARAAL 227
Query: 114 EMNGHVIDEHTIRVDKALTTTKSN-SHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIR 172
NG ++++H +RVD A K + S+F+GN+ F ++E +R FE G ++ VRLIR
Sbjct: 228 ASNGKIVNKHHMRVDIAGNNKKHDMKRSLFVGNLAFNIDDEAVRNHFEEFGTVEGVRLIR 287
Query: 173 DQHTNIGKGFGYVNF 187
D+ T +GKGFGYV F
Sbjct: 288 DKATGVGKGFGYVLF 302
>gi|45185960|ref|NP_983676.1| ACR274Wp [Ashbya gossypii ATCC 10895]
gi|74694749|sp|Q75BJ7.1|NOP12_ASHGO RecName: Full=Nucleolar protein 12
gi|44981750|gb|AAS51500.1| ACR274Wp [Ashbya gossypii ATCC 10895]
Length = 426
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 63/158 (39%), Positives = 88/158 (55%), Gaps = 13/158 (8%)
Query: 64 VETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEH 123
VE++RFRS+ + LPRK K+H R ++NAYV + E+V A ++NG V +H
Sbjct: 184 VESIRFRSIAFEE-ALPRKVAFVQQKLHHTRDSVNAYVVYAEKEAVTAACKLNGSVFHDH 242
Query: 124 TIRVDK-ALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGF 182
+R D A S+F+GN+ FE EE L K F SCG I+ VR++RD TN+GKGF
Sbjct: 243 HLRFDSVAHPAPHDRKRSVFVGNLDFEESEESLWKHFMSCGPIEYVRIVRDPKTNVGKGF 302
Query: 183 GYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKG 220
YV F A+ + KA L+ D+ +GKG
Sbjct: 303 AYVQF-ADLVSVNKAL----------LLNDKKMAVGKG 329
>gi|356529724|ref|XP_003533438.1| PREDICTED: nucleolar protein 12-like [Glycine max]
Length = 519
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 57/150 (38%), Positives = 89/150 (59%), Gaps = 18/150 (12%)
Query: 58 FKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNG 117
FK +GEVE+VR RSVP+ D PRK I K+++ +++AY+ FK +S + +L N
Sbjct: 213 FKKFGEVESVRIRSVPIQDTKKPRKGAILAKKINDAADSVHAYIVFKTEQSAQASLSHNM 272
Query: 118 HVIDEHTIRVDKALTTTK----------SNSHSIFIGNIPFEAEEEELRKAFESCG---- 163
+++ + IRVD+A K + ++F+GN+PF+ ++EEL + F CG
Sbjct: 273 SLVEGNHIRVDRACPPRKKHKGESTPLYDDKRTVFVGNLPFDVKDEELYQLF--CGISNL 330
Query: 164 --EIDNVRLIRDQHTNIGKGFGYVNFKAEE 191
I+ VR++RD H N+GKG YV FK +E
Sbjct: 331 ESSIEAVRVVRDPHLNVGKGIAYVLFKTKE 360
>gi|296412075|ref|XP_002835753.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295629543|emb|CAZ79910.1| unnamed protein product [Tuber melanosporum]
Length = 453
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 53/123 (43%), Positives = 82/123 (66%), Gaps = 2/123 (1%)
Query: 66 TVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTI 125
++RFRSV ++ +PRKA +K+HEK+ +NAYV + +AL++NG V+ + I
Sbjct: 202 SIRFRSVAFSE-QIPRKAAFVTHKLHEKQQTVNAYVVYSTPVEAREALKLNGKVVLDRHI 260
Query: 126 RVDK-ALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGY 184
RVD A + + +FIGN+ FEA+EE L + F +CG++++VR++RD TN+GKGF Y
Sbjct: 261 RVDSVAHPSPQDPKRCVFIGNLDFEAQEENLWRHFGTCGKVESVRVVRDAKTNVGKGFAY 320
Query: 185 VNF 187
V F
Sbjct: 321 VQF 323
>gi|374106883|gb|AEY95792.1| FACR274Wp [Ashbya gossypii FDAG1]
Length = 426
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 63/158 (39%), Positives = 88/158 (55%), Gaps = 13/158 (8%)
Query: 64 VETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEH 123
VE++RFRS+ + LPRK K+H R ++NAYV + E+V A ++NG V +H
Sbjct: 184 VESIRFRSIAFEE-ALPRKVAFVQQKLHHTRDSVNAYVVYAEKEAVTAACKLNGSVFHDH 242
Query: 124 TIRVDK-ALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGF 182
+R D A S+F+GN+ FE EE L K F SCG I+ VR++RD TN+GKGF
Sbjct: 243 HLRFDSVAHPAPHDRKRSVFVGNLDFEESEESLWKHFMSCGPIEYVRIVRDPKTNVGKGF 302
Query: 183 GYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKG 220
YV F A+ + KA L+ D+ +GKG
Sbjct: 303 AYVQF-ADLVSVNKAL----------LLNDKKMAVGKG 329
>gi|323352349|gb|EGA84884.1| Nop12p [Saccharomyces cerevisiae VL3]
Length = 346
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 58/127 (45%), Positives = 76/127 (59%), Gaps = 3/127 (2%)
Query: 64 VETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALE-MNGHVIDE 122
+E++RFRS+ D LPRK K H+ R +NAY+ +KN +V K +N V +
Sbjct: 191 IESIRFRSISF-DEALPRKVAFVQQKFHKSRDTINAYIVYKNKSAVRKICSNLNAVVFQD 249
Query: 123 HTIRVDK-ALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKG 181
H +RVD A SIF+GN+ FE EE L K FE CG+I+ VR+IRD TN+GKG
Sbjct: 250 HHLRVDSVAHPAPHDKKRSIFVGNLDFEEIEESLWKHFEPCGDIEYVRIIRDSKTNMGKG 309
Query: 182 FGYVNFK 188
F YV FK
Sbjct: 310 FAYVQFK 316
>gi|323335669|gb|EGA76952.1| Nop12p [Saccharomyces cerevisiae Vin13]
Length = 358
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 58/127 (45%), Positives = 76/127 (59%), Gaps = 3/127 (2%)
Query: 64 VETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALE-MNGHVIDE 122
+E++RFRS+ D LPRK K H+ R +NAY+ +KN +V K +N V +
Sbjct: 203 IESIRFRSISF-DEALPRKVAFVQQKFHKSRDTINAYIVYKNKSAVRKICSNLNAVVFQD 261
Query: 123 HTIRVDK-ALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKG 181
H +RVD A SIF+GN+ FE EE L K FE CG+I+ VR+IRD TN+GKG
Sbjct: 262 HHLRVDSVAHPAPHDKKRSIFVGNLDFEEIEESLWKHFEPCGDIEYVRIIRDSKTNMGKG 321
Query: 182 FGYVNFK 188
F YV FK
Sbjct: 322 FAYVQFK 328
>gi|323303035|gb|EGA56838.1| Nop12p [Saccharomyces cerevisiae FostersB]
Length = 459
Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 58/127 (45%), Positives = 76/127 (59%), Gaps = 3/127 (2%)
Query: 64 VETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALE-MNGHVIDE 122
+E++RFRS+ D LPRK K H+ R +NAY+ +KN +V K +N V +
Sbjct: 203 IESIRFRSISF-DEALPRKVAFVQQKFHKSRDTINAYIVYKNKSAVRKICSNLNAVVFQD 261
Query: 123 HTIRVDK-ALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKG 181
H +RVD A SIF+GN+ FE EE L K FE CG+I+ VR+IRD TN+GKG
Sbjct: 262 HHLRVDSVAHPAPHDKKRSIFVGNLDFEEIEESLWKHFEPCGDIEYVRIIRDSKTNMGKG 321
Query: 182 FGYVNFK 188
F YV FK
Sbjct: 322 FAYVQFK 328
>gi|190407303|gb|EDV10570.1| nucleolar protein 12 [Saccharomyces cerevisiae RM11-1a]
Length = 459
Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 58/127 (45%), Positives = 76/127 (59%), Gaps = 3/127 (2%)
Query: 64 VETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALE-MNGHVIDE 122
+E++RFRS+ D LPRK K H+ R +NAY+ +KN +V K +N V +
Sbjct: 203 IESIRFRSISF-DEALPRKVAFVQQKFHKSRDTINAYIVYKNKSAVRKICSNLNAVVFQD 261
Query: 123 HTIRVDK-ALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKG 181
H +RVD A SIF+GN+ FE EE L K FE CG+I+ VR+IRD TN+GKG
Sbjct: 262 HHLRVDSVAHPAPHDKKRSIFVGNLDFEEIEESLWKHFEPCGDIEYVRIIRDSKTNMGKG 321
Query: 182 FGYVNFK 188
F YV FK
Sbjct: 322 FAYVQFK 328
>gi|151945592|gb|EDN63833.1| nucleolar protein [Saccharomyces cerevisiae YJM789]
Length = 459
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 58/127 (45%), Positives = 76/127 (59%), Gaps = 3/127 (2%)
Query: 64 VETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALE-MNGHVIDE 122
+E++RFRS+ D LPRK K H+ R +NAY+ +KN +V K +N V +
Sbjct: 203 IESIRFRSISF-DEALPRKVAFVQQKFHKSRDTINAYIVYKNKSAVRKICSNLNAVVFQD 261
Query: 123 HTIRVDK-ALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKG 181
H +RVD A SIF+GN+ FE EE L K FE CG+I+ VR+IRD TN+GKG
Sbjct: 262 HHLRVDSVAHPAPHDKKRSIFVGNLDFEEIEESLWKHFEPCGDIEYVRIIRDSKTNMGKG 321
Query: 182 FGYVNFK 188
F YV FK
Sbjct: 322 FAYVQFK 328
>gi|6324532|ref|NP_014601.1| Nop12p [Saccharomyces cerevisiae S288c]
gi|74676462|sp|Q08208.1|NOP12_YEAST RecName: Full=Nucleolar protein 12
gi|1419839|emb|CAA99043.1| unnamed protein product [Saccharomyces cerevisiae]
gi|207341353|gb|EDZ69435.1| YOL041Cp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|256273915|gb|EEU08834.1| Nop12p [Saccharomyces cerevisiae JAY291]
gi|259149444|emb|CAY86248.1| Nop12p [Saccharomyces cerevisiae EC1118]
gi|285814848|tpg|DAA10741.1| TPA: Nop12p [Saccharomyces cerevisiae S288c]
gi|323346597|gb|EGA80883.1| Nop12p [Saccharomyces cerevisiae Lalvin QA23]
gi|349581127|dbj|GAA26285.1| K7_Nop12p [Saccharomyces cerevisiae Kyokai no. 7]
gi|365763209|gb|EHN04739.1| Nop12p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 459
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 58/127 (45%), Positives = 76/127 (59%), Gaps = 3/127 (2%)
Query: 64 VETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALE-MNGHVIDE 122
+E++RFRS+ D LPRK K H+ R +NAY+ +KN +V K +N V +
Sbjct: 203 IESIRFRSISF-DEALPRKVAFVQQKFHKSRDTINAYIVYKNKSAVRKICSNLNAVVFQD 261
Query: 123 HTIRVDK-ALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKG 181
H +RVD A SIF+GN+ FE EE L K FE CG+I+ VR+IRD TN+GKG
Sbjct: 262 HHLRVDSVAHPAPHDKKRSIFVGNLDFEEIEESLWKHFEPCGDIEYVRIIRDSKTNMGKG 321
Query: 182 FGYVNFK 188
F YV FK
Sbjct: 322 FAYVQFK 328
>gi|401623704|gb|EJS41793.1| nop12p [Saccharomyces arboricola H-6]
Length = 470
Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 58/131 (44%), Positives = 79/131 (60%), Gaps = 4/131 (3%)
Query: 60 PYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALE-MNGH 118
P+ +E++RFRS+ D LPRK K H+ R +NAY+ +KN +V + +N
Sbjct: 211 PFA-IESIRFRSISF-DEALPRKVAFVQQKFHKSRDTVNAYIVYKNKSAVRQICSTLNST 268
Query: 119 VIDEHTIRVDK-ALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTN 177
+ +H +RVD A SIF+GN+ FE EE L K FESCG+I+ VR+IRD TN
Sbjct: 269 LFQDHHLRVDAVAHPAPHDKKRSIFVGNLDFEEIEESLWKHFESCGDIEYVRIIRDSKTN 328
Query: 178 IGKGFGYVNFK 188
+GKGF YV FK
Sbjct: 329 MGKGFAYVQFK 339
>gi|326915530|ref|XP_003204069.1| PREDICTED: RNA-binding protein 34-like [Meleagris gallopavo]
Length = 475
Score = 107 bits (267), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 56/142 (39%), Positives = 85/142 (59%), Gaps = 2/142 (1%)
Query: 48 NHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLE 107
N+ + S+FK YG++E++RFRSV A++ L RK K+H +NAYV FK
Sbjct: 164 NYTAQMLKSLFKEYGQIESIRFRSVVPAEVALSRKLATIKRKIHPNVKYINAYVVFKEEH 223
Query: 108 SVEKALEMNG-HVIDEHTIRVDKALTTT-KSNSHSIFIGNIPFEAEEEELRKAFESCGEI 165
+ KAL+ NG V IRVD A + N S+F+GN+ ++ + +R+ F CG++
Sbjct: 224 AAVKALKKNGTEVASGFHIRVDSASKNSLHDNKRSVFLGNLAYDISDSAVREHFADCGDV 283
Query: 166 DNVRLIRDQHTNIGKGFGYVNF 187
VR++RD+ + +GKGFGYV F
Sbjct: 284 VAVRIVRDRQSGMGKGFGYVLF 305
>gi|255724660|ref|XP_002547259.1| nucleolar protein 12 [Candida tropicalis MYA-3404]
gi|240135150|gb|EER34704.1| nucleolar protein 12 [Candida tropicalis MYA-3404]
Length = 476
Score = 107 bits (267), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 57/139 (41%), Positives = 85/139 (61%), Gaps = 4/139 (2%)
Query: 53 SVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKA 112
S +FK YG++E++R+RS+ D LPRK +H+ R ++NAY+ +K + A
Sbjct: 193 SFKKLFKHYGKIESIRYRSISF-DENLPRKVAFAKKNLHKSRDSVNAYIVYKEKPASLAA 251
Query: 113 LEMNGHVIDEHTIRVDK-ALTTTKSNSHSIFIGNIPFEAEEEELRKAFES--CGEIDNVR 169
E+N V ++H +RVD A K N +IF+GN+ FE +EE L K F S ++++VR
Sbjct: 252 KELNATVFEDHHLRVDHVAHPAPKDNKKTIFVGNLDFEEKEESLWKYFNSKLDNDVESVR 311
Query: 170 LIRDQHTNIGKGFGYVNFK 188
+IRD TN+GKGF V FK
Sbjct: 312 IIRDSKTNLGKGFALVQFK 330
>gi|224138160|ref|XP_002326533.1| predicted protein [Populus trichocarpa]
gi|222833855|gb|EEE72332.1| predicted protein [Populus trichocarpa]
Length = 487
Score = 107 bits (266), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 58/148 (39%), Positives = 87/148 (58%), Gaps = 14/148 (9%)
Query: 58 FKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNG 117
F +G+VE+VR RSVP+A+ +PRK I + K ++ +++AYV FKN +S E +L N
Sbjct: 184 FSKFGDVESVRIRSVPIAESKIPRKGAILLKKFNDNVDSVHAYVVFKNEQSAEASLSHNM 243
Query: 118 HVIDEHTIRVDKALTTTK----------SNSHSIFIGNIPFEAEEEELRKAF----ESCG 163
V+ + IRVD+A K N ++F+GN+PF+ ++EEL + F +
Sbjct: 244 AVVGGNHIRVDRACPPRKKLKGSDAPLYDNKRTVFVGNLPFDVKDEELYQLFTGIKDLAS 303
Query: 164 EIDNVRLIRDQHTNIGKGFGYVNFKAEE 191
I+ VR+IRD H +GKG YV FK E
Sbjct: 304 SIEAVRVIRDPHVGLGKGIAYVLFKTRE 331
>gi|327262180|ref|XP_003215903.1| PREDICTED: RNA-binding protein 34-like [Anolis carolinensis]
Length = 377
Score = 106 bits (265), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 54/136 (39%), Positives = 81/136 (59%), Gaps = 2/136 (1%)
Query: 54 VTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKAL 113
+ + F+ YG++E++RFRS+ ++ TL +K K H R +NAY+ FK + AL
Sbjct: 149 LKAFFREYGQIESIRFRSLIPSEDTLSKKLAAIKRKFHPNRKYINAYIVFKEEHAANDAL 208
Query: 114 EMNG-HVIDEHTIRVDKAL-TTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLI 171
+ NG IRVD A +T N S+F+GN+P+ +++ +R F CG + VR++
Sbjct: 209 KCNGTEFCSGFHIRVDLASKSTCHDNKRSVFVGNLPYAIDDDTVRTHFSQCGNVMGVRIV 268
Query: 172 RDQHTNIGKGFGYVNF 187
RDQ T IGKGFGYV F
Sbjct: 269 RDQRTGIGKGFGYVLF 284
>gi|330801407|ref|XP_003288719.1| hypothetical protein DICPUDRAFT_79507 [Dictyostelium purpureum]
gi|325081234|gb|EGC34757.1| hypothetical protein DICPUDRAFT_79507 [Dictyostelium purpureum]
Length = 475
Score = 106 bits (265), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 71/165 (43%), Positives = 100/165 (60%), Gaps = 9/165 (5%)
Query: 35 LKLKMNP-----SLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNK 89
L+ K NP S K +N + S F +G++E+VRFRS+P++ I RK +
Sbjct: 258 LREKQNPRTVFVSNIKLENANEKDIKSKFIEFGKIESVRFRSIPISSIDANRKETFIKKQ 317
Query: 90 VHEKRTNMNAYVRFKNLESVEKALE-MNGHVIDEHTIRVDKA--LTTTKSNSHSIFIGNI 146
HEKR NAY+ F S +KA++ MNG + IRVD A + S++ +F+GN+
Sbjct: 318 FHEKRDTCNAYIVFDTEASAKKAVDSMNGKELFGKHIRVDLASHKPSKDSDAKCVFVGNV 377
Query: 147 PFEAEEEELRKAFESC-GEIDNVRLIRDQHTNIGKGFGYVNFKAE 190
P+E EEEEL F + GE+ +VR++RDQH+NIGKGFGYVNF E
Sbjct: 378 PYEIEEEELFLLFNTTFGEVLSVRIVRDQHSNIGKGFGYVNFNTE 422
>gi|444314259|ref|XP_004177787.1| hypothetical protein TBLA_0A04750 [Tetrapisispora blattae CBS 6284]
gi|387510826|emb|CCH58268.1| hypothetical protein TBLA_0A04750 [Tetrapisispora blattae CBS 6284]
Length = 473
Score = 106 bits (265), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 57/131 (43%), Positives = 83/131 (63%), Gaps = 4/131 (3%)
Query: 60 PYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEK-ALEMNGH 118
P+ +E++RFRS+ D LPRK K H+ R ++NAY+ +K ++V++ A +NG
Sbjct: 220 PFA-IESIRFRSISF-DEALPRKVAFVQQKFHKLRDSVNAYIVYKRRKAVKQIAKHLNGM 277
Query: 119 VIDEHTIRVDK-ALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTN 177
+ +RVD A + N SIF+GN+ FE +EE L K F SCG+I+ VR++RD TN
Sbjct: 278 EFHDRHLRVDSVAHPSVHENKRSIFVGNLDFEEDEENLWKHFLSCGDIEYVRIVRDSKTN 337
Query: 178 IGKGFGYVNFK 188
+GKGF YV FK
Sbjct: 338 LGKGFAYVQFK 348
>gi|367004328|ref|XP_003686897.1| hypothetical protein TPHA_0H02600 [Tetrapisispora phaffii CBS 4417]
gi|357525199|emb|CCE64463.1| hypothetical protein TPHA_0H02600 [Tetrapisispora phaffii CBS 4417]
Length = 458
Score = 106 bits (264), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 53/128 (41%), Positives = 83/128 (64%), Gaps = 3/128 (2%)
Query: 63 EVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALE-MNGHVID 121
E+E++RFRS+ ++ LPRK K+H+ R ++NAY+ +KN + ++ + +NG++
Sbjct: 199 EIESIRFRSISFEEM-LPRKIAYVKQKLHKTRDSVNAYIIYKNKKVIKTITKNLNGYIFH 257
Query: 122 EHTIRVDK-ALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGK 180
+H +RVD + T N S+F+GN+ FE EE L + F GEI+ VR++RD TN+GK
Sbjct: 258 DHHLRVDSVSHPTAHDNKRSLFVGNLDFEEAEETLWRHFAKAGEIEYVRVVRDSKTNVGK 317
Query: 181 GFGYVNFK 188
GF YV FK
Sbjct: 318 GFAYVQFK 325
>gi|392296290|gb|EIW07392.1| Nop12p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 459
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 57/127 (44%), Positives = 75/127 (59%), Gaps = 3/127 (2%)
Query: 64 VETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALE-MNGHVIDE 122
+E++RFRS+ D LPRK K H+ R +N Y+ +KN +V K +N V +
Sbjct: 203 IESIRFRSISF-DEALPRKVAFVQQKFHKSRDTINTYIVYKNKSAVRKICSNLNAVVFQD 261
Query: 123 HTIRVDK-ALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKG 181
H +RVD A SIF+GN+ FE EE L K FE CG+I+ VR+IRD TN+GKG
Sbjct: 262 HHLRVDSVAHPAPHDKKRSIFVGNLDFEEIEESLWKHFEPCGDIEYVRIIRDSKTNMGKG 321
Query: 182 FGYVNFK 188
F YV FK
Sbjct: 322 FAYVQFK 328
>gi|401840528|gb|EJT43313.1| NOP12-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 460
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 58/127 (45%), Positives = 75/127 (59%), Gaps = 3/127 (2%)
Query: 64 VETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALE-MNGHVIDE 122
+E++RFRS+ D LPRK K H+ R +NAYV +KN +V + +N V
Sbjct: 204 IESIRFRSISF-DEALPRKVAFVQQKFHKSRDTVNAYVVYKNRSAVRQICSNLNATVFQN 262
Query: 123 HTIRVDK-ALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKG 181
H +RVD A SIF+GN+ FE EE L K FESCG I+ VR++RD TN+GKG
Sbjct: 263 HHLRVDAVAHPAPHDKKRSIFVGNLDFEEIEESLWKHFESCGGIEYVRIVRDSKTNMGKG 322
Query: 182 FGYVNFK 188
F YV FK
Sbjct: 323 FAYVQFK 329
>gi|365758459|gb|EHN00299.1| Nop12p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 460
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 58/127 (45%), Positives = 75/127 (59%), Gaps = 3/127 (2%)
Query: 64 VETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALE-MNGHVIDE 122
+E++RFRS+ D LPRK K H+ R +NAYV +KN +V + +N V
Sbjct: 204 IESIRFRSISF-DEALPRKVAFVQQKFHKSRDTVNAYVVYKNRSAVRQICSNLNATVFQN 262
Query: 123 HTIRVDK-ALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKG 181
H +RVD A SIF+GN+ FE EE L K FESCG I+ VR++RD TN+GKG
Sbjct: 263 HHLRVDAVAHPAPHDKKRSIFVGNLDFEEIEESLWKHFESCGGIEYVRIVRDSKTNMGKG 322
Query: 182 FGYVNFK 188
F YV FK
Sbjct: 323 FAYVQFK 329
>gi|255713116|ref|XP_002552840.1| KLTH0D02640p [Lachancea thermotolerans]
gi|238934220|emb|CAR22402.1| KLTH0D02640p [Lachancea thermotolerans CBS 6340]
Length = 462
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 56/127 (44%), Positives = 78/127 (61%), Gaps = 3/127 (2%)
Query: 64 VETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALE-MNGHVIDE 122
VE++RFRS+ + LPRK K+H+ R + NAYV + +V+ A + +NG V +
Sbjct: 221 VESIRFRSISFEE-ALPRKVAFVQQKLHKSRDSANAYVVYAEKAAVKAACQTLNGTVFYD 279
Query: 123 HTIRVDK-ALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKG 181
H +RVD A N S+F+GN+ FE EE L K FE GEI+ VR++RD TN+GKG
Sbjct: 280 HHLRVDSVAHPAQHDNKRSVFVGNLDFEEAEENLWKHFEKSGEIEYVRVVRDSKTNMGKG 339
Query: 182 FGYVNFK 188
F YV F+
Sbjct: 340 FAYVQFR 346
>gi|363731894|ref|XP_423974.3| PREDICTED: RNA-binding protein 34 [Gallus gallus]
Length = 405
Score = 105 bits (262), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 56/136 (41%), Positives = 82/136 (60%), Gaps = 2/136 (1%)
Query: 54 VTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKAL 113
+ S+FK YG++E++RFRSV A+ TL RK K+H +NAYV FK KAL
Sbjct: 178 LKSLFKEYGQIESIRFRSVVPAEDTLSRKLAAIKRKIHPNVKYINAYVVFKEERDAVKAL 237
Query: 114 EMNG-HVIDEHTIRVDKALTTT-KSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLI 171
+ NG V IRVD A + N S+F+GN+ ++ + +R+ F CG++ VR++
Sbjct: 238 KKNGTEVASGFHIRVDSASKNSLHDNKRSVFLGNLAYDISDSAVREHFADCGDVVAVRIV 297
Query: 172 RDQHTNIGKGFGYVNF 187
RD+ + +GKGFGYV F
Sbjct: 298 RDRQSGMGKGFGYVLF 313
>gi|255573457|ref|XP_002527654.1| RNA binding protein, putative [Ricinus communis]
gi|223532959|gb|EEF34725.1| RNA binding protein, putative [Ricinus communis]
Length = 830
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 86/148 (58%), Gaps = 14/148 (9%)
Query: 58 FKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNG 117
F +GE+++VR RSVP+ D +PRK + + K+++ +++AY+ FK +S E +L N
Sbjct: 183 FSQFGEIDSVRIRSVPIVDTKIPRKGAVILKKINDSADSVHAYIVFKTEQSAEASLANNM 242
Query: 118 HVIDEHTIRVDKALTTTK----------SNSHSIFIGNIPFEAEEEELRKAFESCGE--- 164
VI + IRVD+A K N ++F+GN+PF+ ++EE+ + F +
Sbjct: 243 AVIGGNHIRVDRACPPRKKLKGEATPLYDNKRTLFVGNLPFDVKDEEIYQLFSGIKDLES 302
Query: 165 -IDNVRLIRDQHTNIGKGFGYVNFKAEE 191
I+ VR+IRD + +G+G YV FK E
Sbjct: 303 SIEAVRVIRDSYVGLGRGIAYVLFKTRE 330
>gi|241622203|ref|XP_002408913.1| RNA-binding protein musashi, putative [Ixodes scapularis]
gi|215503069|gb|EEC12563.1| RNA-binding protein musashi, putative [Ixodes scapularis]
Length = 266
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 54/131 (41%), Positives = 77/131 (58%), Gaps = 18/131 (13%)
Query: 58 FKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNG 117
F YG +E+VRFRS +H + N+NAYV FK ESV+KAL NG
Sbjct: 86 FNQYGAIESVRFRS-----------------SLHSSKQNVNAYVVFKQKESVDKALVANG 128
Query: 118 HVIDEHTIRVDKALTTTK-SNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHT 176
++ + IRVD+ + + S+F+GN+P E ++EEL F CG++ VR+IRD+ T
Sbjct: 129 SLLLGNHIRVDRVGKKPQVDDRKSVFVGNLPHEVQDEELWNCFSECGQVTGVRVIRDRET 188
Query: 177 NIGKGFGYVNF 187
+GKGFG+V F
Sbjct: 189 GMGKGFGFVTF 199
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 56/135 (41%), Gaps = 46/135 (34%)
Query: 138 SHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEE------ 191
+ +IF+GN+P A E+ LR+ F G I++VR H++ YV FK +E
Sbjct: 65 ARTIFVGNLPVTASEKPLRRFFNQYGAIESVRFRSSLHSSKQNVNAYVVFKQKESVDKAL 124
Query: 192 ----------------------------------------EELRKAFESCGEIDNVRLIR 211
EEL F CG++ VR+IR
Sbjct: 125 VANGSLLLGNHIRVDRVGKKPQVDDRKSVFVGNLPHEVQDEELWNCFSECGQVTGVRVIR 184
Query: 212 DQHTNIGKGFGYVNF 226
D+ T +GKGFG+V F
Sbjct: 185 DRETGMGKGFGFVTF 199
>gi|19115130|ref|NP_594218.1| RNA-binding protein Nop12 (predicted) [Schizosaccharomyces pombe
972h-]
gi|17367899|sp|O13741.1|NOP12_SCHPO RecName: Full=Nucleolar protein 12
gi|2462671|emb|CAB11047.1| RNA-binding protein Nop12 (predicted) [Schizosaccharomyces pombe]
Length = 438
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 54/136 (39%), Positives = 83/136 (61%), Gaps = 2/136 (1%)
Query: 54 VTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKAL 113
+T F+ +G V+++RFRS+ ++ +PRK K H +R +NAY+ F++ S AL
Sbjct: 185 LTKHFRQFGAVDSIRFRSLAFSE-AIPRKVAFFEKKFHSERDTVNAYIVFRDSSSARSAL 243
Query: 114 EMNGHVIDEHTIRVDK-ALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIR 172
+NG + + +RVD + + +F+GN+ FEAEEE L + F CG ID VR++R
Sbjct: 244 SLNGTMFMDRHLRVDSVSHPMPQDTKRCVFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVR 303
Query: 173 DQHTNIGKGFGYVNFK 188
D TN+GKGF Y+ FK
Sbjct: 304 DPKTNLGKGFAYIQFK 319
>gi|297794545|ref|XP_002865157.1| RNA recognition motif-containing protein [Arabidopsis lyrata subsp.
lyrata]
gi|297310992|gb|EFH41416.1| RNA recognition motif-containing protein [Arabidopsis lyrata subsp.
lyrata]
Length = 509
Score = 104 bits (259), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 58/149 (38%), Positives = 90/149 (60%), Gaps = 15/149 (10%)
Query: 58 FKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNG 117
F +GEVE+VR RSVP+ D RK I + +++EK ++++AYV F+ +S E +L N
Sbjct: 197 FSKFGEVESVRIRSVPIVDSKRTRKGAIMLKQINEKASSVHAYVVFETEKSAEASLAHNM 256
Query: 118 HVIDEHTIRVDKALTTTK-----SNSH------SIFIGNIPFEAEEEELRKAFESCGEID 166
+ID + +RVD+A K ++H ++F+GN+PF+ ++EE+ + F ++
Sbjct: 257 SLIDGNHVRVDRACPPRKKQKGQDDTHLYDPKRTVFMGNLPFDVKDEEVYQLFTGKSNLE 316
Query: 167 N----VRLIRDQHTNIGKGFGYVNFKAEE 191
N VR+IRD H NIGKG YV FK E
Sbjct: 317 NSIEAVRVIRDPHLNIGKGIAYVLFKTRE 345
>gi|302310751|ref|XP_455433.2| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|223590101|sp|Q6CKV6.2|NOP12_KLULA RecName: Full=Nucleolar protein 12
gi|199425080|emb|CAG98141.2| KLLA0F07799p [Kluyveromyces lactis]
Length = 462
Score = 103 bits (258), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 56/130 (43%), Positives = 81/130 (62%), Gaps = 9/130 (6%)
Query: 64 VETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALE-MNGHVIDE 122
VE++RFRS+ + LPRK K+H+ R ++NAY + + V+ + +NG V ++
Sbjct: 221 VESIRFRSIAFEE-ALPRKVAFVHQKLHKSRDSINAYAVYGSSNPVKIMCQYLNGKVFND 279
Query: 123 HTIRVDKALTTTKSNSH----SIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNI 178
H +RVD + T + H S+F+GN+ FE EE L K FE CG+I+ VR+IRD TN+
Sbjct: 280 HHLRVD---SVTHPSPHDKRRSVFVGNLDFEEVEESLWKHFEPCGDIEYVRIIRDSKTNM 336
Query: 179 GKGFGYVNFK 188
GKGF YV FK
Sbjct: 337 GKGFAYVQFK 346
>gi|254567033|ref|XP_002490627.1| Nucleolar protein, required for pre-25S rRNA processing
[Komagataella pastoris GS115]
gi|238030423|emb|CAY68347.1| Nucleolar protein, required for pre-25S rRNA processing
[Komagataella pastoris GS115]
gi|328351015|emb|CCA37415.1| Nucleolar protein 12 [Komagataella pastoris CBS 7435]
Length = 445
Score = 103 bits (258), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 59/131 (45%), Positives = 80/131 (61%), Gaps = 5/131 (3%)
Query: 62 GEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVID 121
G VE++RFRS+ + +PR+ E R+ +NAYV ++N +KA E+NG V
Sbjct: 184 GPVESIRFRSIAFK-LPMPRRDAFLSKAFDETRSALNAYVVYENKNDSKKAKELNGKVFK 242
Query: 122 EHTIRVDK-ALTTTKSNSHSIFIGNIPFEAEEEELRKAF-ESCGE--IDNVRLIRDQHTN 177
+H +RVD A + + N SIFIGN+ FE EEE L K F E G+ ++NVR+IRD TN
Sbjct: 243 DHHLRVDHVAHPSPQDNKKSIFIGNLDFEEEEESLWKYFTEKVGQDKVENVRIIRDTKTN 302
Query: 178 IGKGFGYVNFK 188
GKGF V FK
Sbjct: 303 FGKGFAMVQFK 313
>gi|145334753|ref|NP_001078722.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|222424348|dbj|BAH20130.1| AT5G46840 [Arabidopsis thaliana]
gi|332008050|gb|AED95433.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 364
Score = 103 bits (257), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 57/149 (38%), Positives = 89/149 (59%), Gaps = 15/149 (10%)
Query: 58 FKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNG 117
F +GEVE+VR RSVP+ D RK I + +++EK ++++AYV F+ +S +L N
Sbjct: 54 FSKFGEVESVRIRSVPIVDSKRTRKGAIMLKQINEKASSVHAYVVFETEQSAAASLAHNM 113
Query: 118 HVIDEHTIRVDKALTTTK-----SNSH------SIFIGNIPFEAEEEELRKAFESCGEID 166
+ID + +RVD+A K ++H ++F+GN+PF+ ++EE+ + F ++
Sbjct: 114 SLIDGNHVRVDRACPPRKKQKGHDDTHLYDPKRTVFMGNLPFDVKDEEVYQLFTGKSNLE 173
Query: 167 N----VRLIRDQHTNIGKGFGYVNFKAEE 191
N VR+IRD H NIGKG YV FK E
Sbjct: 174 NSIEAVRVIRDPHLNIGKGIAYVLFKTRE 202
>gi|190347472|gb|EDK39744.2| hypothetical protein PGUG_03842 [Meyerozyma guilliermondii ATCC
6260]
Length = 442
Score = 103 bits (257), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 58/136 (42%), Positives = 80/136 (58%), Gaps = 5/136 (3%)
Query: 57 MFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKAL-EM 115
+F G VE+VRFRS+ + LPRKA K+H R ++NAYV +K A+ +
Sbjct: 189 LFSEVGPVESVRFRSIAFGE-ALPRKAAFAQKKLHGARDSVNAYVVYKEKTPSRNAVSRL 247
Query: 116 NGHVIDEHTIRVDK-ALTTTKSNSHSIFIGNIPFEAEEEELRKAFES--CGEIDNVRLIR 172
N D H +RVD A K N +IF+GN+ FEA EEEL + F S ++++VR++R
Sbjct: 248 NAREFDHHHLRVDHVAHPVAKDNKRTIFVGNLDFEASEEELWRYFNSHTDNDVESVRVVR 307
Query: 173 DQHTNIGKGFGYVNFK 188
D TN+GKGF V FK
Sbjct: 308 DSKTNLGKGFALVQFK 323
>gi|410078654|ref|XP_003956908.1| hypothetical protein KAFR_0D01270 [Kazachstania africana CBS 2517]
gi|372463493|emb|CCF57773.1| hypothetical protein KAFR_0D01270 [Kazachstania africana CBS 2517]
Length = 443
Score = 103 bits (256), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 53/126 (42%), Positives = 76/126 (60%), Gaps = 3/126 (2%)
Query: 64 VETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALE-MNGHVIDE 122
+E++RFRS+ D LPRK K+H+ R ++NAY+ +KN +S++ + +NG V
Sbjct: 193 IESIRFRSISF-DEALPRKVAFVRQKLHKSRQSVNAYIVYKNKKSIKPIISALNGKVFHN 251
Query: 123 HTIRVDKAL-TTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKG 181
++VD SIF+GN+ FE +EE L F CGEI+ VR+IRD TN+GKG
Sbjct: 252 RHLKVDSVTHPAPHDKKRSIFVGNLDFEEDEESLWNHFSKCGEIEYVRIIRDSKTNLGKG 311
Query: 182 FGYVNF 187
F YV F
Sbjct: 312 FAYVQF 317
>gi|341884119|gb|EGT40054.1| hypothetical protein CAEBREN_26109 [Caenorhabditis brenneri]
Length = 401
Score = 103 bits (256), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 55/141 (39%), Positives = 88/141 (62%), Gaps = 3/141 (2%)
Query: 53 SVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKA 112
SV +F +G V +VR R++ + L ++ K+++K++++ YV+F+N ESVEKA
Sbjct: 165 SVRRIFSDFGTVSSVRMRNLIPINEKLSKRVTHLSGKLNDKQSSLTFYVKFENEESVEKA 224
Query: 113 LEMNGHVIDEHTIRVDKALTTTKS--NSHSIFIGNIPFEAEEEELRKAF-ESCGEIDNVR 169
L+ NG +++H +RVDK K +IF+GN+PFE E+ L F E G ++ VR
Sbjct: 225 LKYNGTKLEDHVVRVDKVGNKKKDFGKDLAIFVGNLPFETTEDALITFFSEQIGPVEGVR 284
Query: 170 LIRDQHTNIGKGFGYVNFKAE 190
++RD+ T GKGF +VNFK +
Sbjct: 285 IVRDKDTGKGKGFAFVNFKQD 305
>gi|241951268|ref|XP_002418356.1| nucleolar protein, putative [Candida dubliniensis CD36]
gi|223641695|emb|CAX43656.1| nucleolar protein, putative [Candida dubliniensis CD36]
Length = 451
Score = 103 bits (256), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 54/135 (40%), Positives = 84/135 (62%), Gaps = 4/135 (2%)
Query: 57 MFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMN 116
+FK YG+++++R+RS+ D LPRK +H+ R ++NAY+ +K + A E+N
Sbjct: 180 LFKHYGKIDSIRYRSISF-DENLPRKVAFAKKNLHKSRDSVNAYIVYKEKPASIAAKELN 238
Query: 117 GHVIDEHTIRVDK-ALTTTKSNSHSIFIGNIPFEAEEEELRKAFES--CGEIDNVRLIRD 173
V ++H +RVD + K N +IF+GN+ FE +EE L K F S ++++VR+IRD
Sbjct: 239 AAVFEDHHLRVDHVSHPAPKDNKRTIFVGNLDFEEKEETLWKYFNSKFDEDVESVRIIRD 298
Query: 174 QHTNIGKGFGYVNFK 188
TN+GKGF V FK
Sbjct: 299 SKTNLGKGFALVQFK 313
>gi|68469607|ref|XP_721055.1| hypothetical protein CaO19.8429 [Candida albicans SC5314]
gi|68469846|ref|XP_720933.1| hypothetical protein CaO19.809 [Candida albicans SC5314]
gi|74680276|sp|Q5AHI7.1|NOP12_CANAL RecName: Full=Nucleolar protein 12
gi|46442827|gb|EAL02113.1| hypothetical protein CaO19.809 [Candida albicans SC5314]
gi|46442956|gb|EAL02241.1| hypothetical protein CaO19.8429 [Candida albicans SC5314]
Length = 454
Score = 103 bits (256), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 54/135 (40%), Positives = 84/135 (62%), Gaps = 4/135 (2%)
Query: 57 MFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMN 116
+FK YG+++++R+RS+ D LPRK +H+ R ++NAY+ +K + A E+N
Sbjct: 183 LFKHYGKIDSIRYRSISF-DEHLPRKVAFAKKNLHKSRDSVNAYIVYKEKPASIAAKELN 241
Query: 117 GHVIDEHTIRVDK-ALTTTKSNSHSIFIGNIPFEAEEEELRKAFES--CGEIDNVRLIRD 173
V ++H +RVD + K N +IF+GN+ FE +EE L K F S ++++VR+IRD
Sbjct: 242 ATVFEDHHLRVDHVSHPAPKDNKRTIFVGNLDFEEKEETLWKYFNSKLDQDVESVRIIRD 301
Query: 174 QHTNIGKGFGYVNFK 188
TN+GKGF V FK
Sbjct: 302 SKTNLGKGFALVQFK 316
>gi|363749889|ref|XP_003645162.1| hypothetical protein Ecym_2633 [Eremothecium cymbalariae
DBVPG#7215]
gi|356888795|gb|AET38345.1| Hypothetical protein Ecym_2633 [Eremothecium cymbalariae
DBVPG#7215]
Length = 430
Score = 103 bits (256), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 63/161 (39%), Positives = 88/161 (54%), Gaps = 18/161 (11%)
Query: 63 EVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVE---KALEMNGHV 119
+VE++RFRS+ + LPRK K+H+ R ++NAYV +K S+ KAL NG V
Sbjct: 186 KVESIRFRSIAFEE-PLPRKVAFVQQKLHKSRDSVNAYVVYKERSSIPVVCKAL--NGVV 242
Query: 120 IDEHTIRVDK-ALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNI 178
H +R D A S+F+GN+ FE EE L K FESCG+I+ VR+IRD +N+
Sbjct: 243 FHGHHLRFDSVAHPAPHDKKRSVFVGNLDFEEIEENLWKHFESCGDIEYVRIIRDPKSNV 302
Query: 179 GKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGK 219
GKGF YV F G ++ L+ ++ IGK
Sbjct: 303 GKGFAYVQFM-----------DAGSVNKALLLHEKKMTIGK 332
>gi|15237960|ref|NP_199496.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|8809667|dbj|BAA97218.1| unnamed protein product [Arabidopsis thaliana]
gi|32441262|gb|AAP81806.1| At5g46840 [Arabidopsis thaliana]
gi|110736326|dbj|BAF00133.1| hypothetical protein [Arabidopsis thaliana]
gi|332008049|gb|AED95432.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 501
Score = 102 bits (255), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 57/149 (38%), Positives = 89/149 (59%), Gaps = 15/149 (10%)
Query: 58 FKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNG 117
F +GEVE+VR RSVP+ D RK I + +++EK ++++AYV F+ +S +L N
Sbjct: 191 FSKFGEVESVRIRSVPIVDSKRTRKGAIMLKQINEKASSVHAYVVFETEQSAAASLAHNM 250
Query: 118 HVIDEHTIRVDKALTTTK-----SNSH------SIFIGNIPFEAEEEELRKAFESCGEID 166
+ID + +RVD+A K ++H ++F+GN+PF+ ++EE+ + F ++
Sbjct: 251 SLIDGNHVRVDRACPPRKKQKGHDDTHLYDPKRTVFMGNLPFDVKDEEVYQLFTGKSNLE 310
Query: 167 N----VRLIRDQHTNIGKGFGYVNFKAEE 191
N VR+IRD H NIGKG YV FK E
Sbjct: 311 NSIEAVRVIRDPHLNIGKGIAYVLFKTRE 339
>gi|238882194|gb|EEQ45832.1| nucleolar protein 12 [Candida albicans WO-1]
Length = 455
Score = 102 bits (255), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 54/135 (40%), Positives = 84/135 (62%), Gaps = 4/135 (2%)
Query: 57 MFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMN 116
+FK YG+++++R+RS+ D LPRK +H+ R ++NAY+ +K + A E+N
Sbjct: 184 LFKHYGKIDSIRYRSISF-DEHLPRKVAFAKKNLHKSRDSVNAYIVYKEKPASIAAKELN 242
Query: 117 GHVIDEHTIRVDK-ALTTTKSNSHSIFIGNIPFEAEEEELRKAFES--CGEIDNVRLIRD 173
V ++H +RVD + K N +IF+GN+ FE +EE L K F S ++++VR+IRD
Sbjct: 243 ATVFEDHHLRVDHVSHPAPKDNKRTIFVGNLDFEEKEETLWKYFNSKLDQDVESVRIIRD 302
Query: 174 QHTNIGKGFGYVNFK 188
TN+GKGF V FK
Sbjct: 303 SKTNLGKGFALVQFK 317
>gi|403218189|emb|CCK72680.1| hypothetical protein KNAG_0L00570 [Kazachstania naganishii CBS
8797]
Length = 431
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 53/127 (41%), Positives = 79/127 (62%), Gaps = 3/127 (2%)
Query: 64 VETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALE-MNGHVIDE 122
++++RFRS+ D LPRK K+H+ R ++NAY+ +K ++V+ + +NG
Sbjct: 178 IDSIRFRSISF-DEPLPRKVAFVQQKLHKSRDSINAYIVYKTKDAVKLVCQKLNGVEFHN 236
Query: 123 HTIRVDKALTTTKSNSH-SIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKG 181
+RVD TK + S+FIGN+ FE +EE L K F +CG I+ VR++RD TN+GKG
Sbjct: 237 RHLRVDSVSHPTKHDKQRSVFIGNLDFEEDEETLWKHFATCGPIEYVRIVRDSKTNVGKG 296
Query: 182 FGYVNFK 188
F YV FK
Sbjct: 297 FAYVQFK 303
>gi|449018258|dbj|BAM81660.1| similar to nucleolar RNA-binding protein [Cyanidioschyzon merolae
strain 10D]
Length = 406
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 59/174 (33%), Positives = 87/174 (50%), Gaps = 39/174 (22%)
Query: 56 SMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALEM 115
++F+ G++ + R RS A LPRKA + +H R NA++ F++ +VE+AL +
Sbjct: 62 ALFRSCGKIVSSRLRSFTPAKPNLPRKAAMNQGAIHPTRRTCNAFLVFEDDVAVERALLL 121
Query: 116 NGHVIDEHT-----IRVDKAL---------TTTKSNS----------------------- 138
NG ++ +RVD+ TT++++
Sbjct: 122 NGTPLETDDGSQVHMRVDRCYLAPQKMREQRTTRADTGTGDAAAPSYTSPDALSAKIAWD 181
Query: 139 --HSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAE 190
HSIFIGN+PF A EEE+R F CG I NVR++RD T +GKGF YV F E
Sbjct: 182 HRHSIFIGNVPFTANEEEIRSVFSDCGAILNVRIVRDAQTGMGKGFAYVTFAPE 235
>gi|21554835|gb|AAM63703.1| unknown [Arabidopsis thaliana]
Length = 501
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 57/149 (38%), Positives = 89/149 (59%), Gaps = 15/149 (10%)
Query: 58 FKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNG 117
F +GEVE+VR RSVP+ D RK I + +++EK ++++AYV F+ +S +L N
Sbjct: 191 FSKFGEVESVRIRSVPIVDSKRTRKGAIMLKQINEKASSVHAYVVFETEQSAAASLAHNM 250
Query: 118 HVIDEHTIRVDKALTTTK-----SNSH------SIFIGNIPFEAEEEELRKAFESCGEID 166
+ID + +RVD+A K ++H ++F+GN+PF+ ++EE+ + F ++
Sbjct: 251 SLIDGNHVRVDRACPPRKKQKGHDDTHLYDPKRTVFMGNLPFDVKDEEVYQLFTGKSNLE 310
Query: 167 N----VRLIRDQHTNIGKGFGYVNFKAEE 191
N VR+IRD H NIGKG YV FK E
Sbjct: 311 NSIEAVRVIRDPHLNIGKGIAYVLFKTRE 339
>gi|17539754|ref|NP_502291.1| Protein F11A10.7 [Caenorhabditis elegans]
gi|15718191|emb|CAC70081.1| Protein F11A10.7 [Caenorhabditis elegans]
Length = 394
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 55/141 (39%), Positives = 88/141 (62%), Gaps = 3/141 (2%)
Query: 53 SVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKA 112
SV +F +G + +VR R++ A+ L ++ K+++K++++ YV+F ESVEKA
Sbjct: 158 SVRRIFSDFGTISSVRMRNLLPANEKLTKRVTHLTGKLNDKQSSLTFYVKFGAEESVEKA 217
Query: 113 LEMNGHVIDEHTIRVDKALTTTK--SNSHSIFIGNIPFEAEEEELRKAFES-CGEIDNVR 169
L+ NG +D+H IRVDK + K +IF+GN+PFE E+ L F + G ++ VR
Sbjct: 218 LKYNGTKLDDHVIRVDKVGSKKKEFGKDMAIFVGNLPFEITEDALITFFSAQIGPVEAVR 277
Query: 170 LIRDQHTNIGKGFGYVNFKAE 190
++RD+ T GKGF +VNFK +
Sbjct: 278 IVRDKDTGKGKGFAFVNFKQD 298
>gi|125546498|gb|EAY92637.1| hypothetical protein OsI_14381 [Oryza sativa Indica Group]
Length = 441
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 56/160 (35%), Positives = 91/160 (56%), Gaps = 16/160 (10%)
Query: 45 KSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFK 104
K+K AL T F +GE+E+VR RSVP+ D +PRK + K+++ N++AY+ FK
Sbjct: 137 KTKRKAL---TKEFAAFGEIESVRIRSVPLTDTKIPRKGAVIKGKINDSVDNVHAYIVFK 193
Query: 105 NLESVEKALEMNGHVIDEHTIRVDKALTTTK---------SNSHSIFIGNIPFEAEEEEL 155
+ + AL N + D + +RVD A K ++F+GN+PF+ ++EE+
Sbjct: 194 DEQGARAALSHNMALFDGNHVRVDMACPPRKKLKGEGPLYDRKRTVFVGNLPFDIKDEEV 253
Query: 156 RKAF----ESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEE 191
+ F S G+++ +R++RD T++GKG YV FK E
Sbjct: 254 YQKFCGSSGSEGDVEAIRVVRDPDTSLGKGIAYVLFKTRE 293
>gi|115456673|ref|NP_001051937.1| Os03g0854300 [Oryza sativa Japonica Group]
gi|29126350|gb|AAO66542.1| expressed protein [Oryza sativa Japonica Group]
gi|108712166|gb|ABF99961.1| RNA recognition motif, putative, expressed [Oryza sativa Japonica
Group]
gi|113550408|dbj|BAF13851.1| Os03g0854300 [Oryza sativa Japonica Group]
gi|125588687|gb|EAZ29351.1| hypothetical protein OsJ_13417 [Oryza sativa Japonica Group]
gi|215706962|dbj|BAG93422.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 441
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 56/160 (35%), Positives = 91/160 (56%), Gaps = 16/160 (10%)
Query: 45 KSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFK 104
K+K AL T F +GE+E+VR RSVP+ D +PRK + K+++ N++AY+ FK
Sbjct: 137 KTKRKAL---TKEFAAFGEIESVRIRSVPLTDTKIPRKGAVIKGKINDSVDNVHAYIVFK 193
Query: 105 NLESVEKALEMNGHVIDEHTIRVDKALTTTK---------SNSHSIFIGNIPFEAEEEEL 155
+ + AL N + D + +RVD A K ++F+GN+PF+ ++EE+
Sbjct: 194 DEQGARAALSHNMALFDGNHVRVDMACPPRKKLKGEGPLYDRKRTVFVGNLPFDIKDEEV 253
Query: 156 RKAF----ESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEE 191
+ F S G+++ +R++RD T++GKG YV FK E
Sbjct: 254 YQKFCGSSGSEGDVEAIRVVRDPDTSLGKGIAYVLFKTRE 293
>gi|268536642|ref|XP_002633456.1| Hypothetical protein CBG06224 [Caenorhabditis briggsae]
Length = 393
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 56/140 (40%), Positives = 86/140 (61%), Gaps = 2/140 (1%)
Query: 53 SVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKA 112
SV+ +F +G+V +VR R + + L R+ K+ +K+T++ YV+F+ ESVEKA
Sbjct: 159 SVSRIFSDFGKVSSVRMRCLIPTNEKLTRRVTHLSGKLSDKQTSLTFYVKFEEEESVEKA 218
Query: 113 LEMNGHVIDEHTIRVDKALTTTK-SNSHSIFIGNIPFEAEEEELRKAF-ESCGEIDNVRL 170
L+ NG +++H IRVD T +IF+GN+PF+ E+ L F E G I+ VR+
Sbjct: 219 LKYNGTKLEDHLIRVDTVGTKKGFGKDMAIFVGNLPFDITEDTLSNFFTEKVGAIEAVRI 278
Query: 171 IRDQHTNIGKGFGYVNFKAE 190
IRD+ + GKGF +VNFK +
Sbjct: 279 IRDKDSGKGKGFAFVNFKQD 298
Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 62/162 (38%), Gaps = 64/162 (39%)
Query: 130 ALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRL------------------- 170
A +T N+ ++F+GN+P E+ + + F G++ +VR+
Sbjct: 135 ARSTAADNAKTVFVGNMPLTMNEKSVSRIFSDFGKVSSVRMRCLIPTNEKLTRRVTHLSG 194
Query: 171 -IRDQHTNI-----------------------------------GKGFGY--------VN 186
+ D+ T++ KGFG +
Sbjct: 195 KLSDKQTSLTFYVKFEEEESVEKALKYNGTKLEDHLIRVDTVGTKKGFGKDMAIFVGNLP 254
Query: 187 FKAEEEELRKAF-ESCGEIDNVRLIRDQHTNIGKGFGYVNFK 227
F E+ L F E G I+ VR+IRD+ + GKGF +VNFK
Sbjct: 255 FDITEDTLSNFFTEKVGAIEAVRIIRDKDSGKGKGFAFVNFK 296
>gi|344303112|gb|EGW33386.1| hypothetical protein SPAPADRAFT_50271 [Spathaspora passalidarum
NRRL Y-27907]
Length = 463
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 55/135 (40%), Positives = 83/135 (61%), Gaps = 4/135 (2%)
Query: 57 MFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMN 116
+FK YG+V+++RFRS+ + LPRK +H+ R ++NAYV FK + + ++N
Sbjct: 191 LFKAYGKVDSMRFRSISFEE-NLPRKISFAKKNLHKSRDSVNAYVVFKEKGASMDSRKLN 249
Query: 117 GHVIDEHTIRVDK-ALTTTKSNSHSIFIGNIPFEAEEEELRKAFES--CGEIDNVRLIRD 173
G V ++H +RVD A K SIF+GN+ FE +E+ L K F ++++VR+IRD
Sbjct: 250 GTVFEDHHLRVDHVAHPAAKDTKRSIFVGNLDFEEKEDNLWKYFNKKLDNDVESVRIIRD 309
Query: 174 QHTNIGKGFGYVNFK 188
TN+GKGF V FK
Sbjct: 310 SKTNLGKGFALVQFK 324
>gi|449278094|gb|EMC86061.1| RNA-binding protein 34, partial [Columba livia]
Length = 184
Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 57/143 (39%), Positives = 86/143 (60%), Gaps = 2/143 (1%)
Query: 48 NHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLE 107
N + S+FK YG+++++RFRS+ A+ TL +K +KVH +NAYV FK
Sbjct: 11 NCTAQELKSLFKEYGQIKSIRFRSLVPAEETLSKKLAAIKHKVHPNVKFVNAYVVFKEEC 70
Query: 108 SVEKALEMNG-HVIDEHTIRVDKAL-TTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEI 165
KAL NG + IRVD A T++ N S+F+GN+ ++ + +R+ F CGE+
Sbjct: 71 DAIKALNENGTEIARGFHIRVDIASKTSSHDNKRSVFLGNLSYDISNDAVREHFAVCGEV 130
Query: 166 DNVRLIRDQHTNIGKGFGYVNFK 188
VR++RD+ T +GKGFGYV F+
Sbjct: 131 VAVRIVRDRKTGLGKGFGYVLFE 153
>gi|395531593|ref|XP_003767862.1| PREDICTED: RNA-binding protein 34 [Sarcophilus harrisii]
Length = 438
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 55/135 (40%), Positives = 82/135 (60%), Gaps = 1/135 (0%)
Query: 54 VTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKAL 113
+ S FK YG++E VRFRS+ A L +K +VH ++ ++N YV FK + EKAL
Sbjct: 208 LKSFFKEYGQIECVRFRSLIPAKSNLSKKIAAIKREVHPEQKSINGYVVFKEESAAEKAL 267
Query: 114 EMNGHVIDEH-TIRVDKALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIR 172
+ NG I E IRV+ T + S+F+GN+P++ EE +++ F CG + V+L+R
Sbjct: 268 KRNGAQIAEGFPIRVELISDTPLRSKRSVFVGNLPYKIEETAIQEHFSDCGSVLAVKLVR 327
Query: 173 DQHTNIGKGFGYVNF 187
++ T IGKG GYV F
Sbjct: 328 NKVTGIGKGCGYVLF 342
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 39/165 (23%), Positives = 64/165 (38%), Gaps = 64/165 (38%)
Query: 125 IRVDKALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVR--------------- 169
I++++A K N ++F+GN+P +++EL+ F+ G+I+ VR
Sbjct: 179 IQINEAEERIK-NKRTVFVGNLPVTCKKKELKSFFKEYGQIECVRFRSLIPAKSNLSKKI 237
Query: 170 --LIRDQHTNIGKGFGYVNFKA-------------------------------------- 189
+ R+ H GYV FK
Sbjct: 238 AAIKREVHPEQKSINGYVVFKEESAAEKALKRNGAQIAEGFPIRVELISDTPLRSKRSVF 297
Query: 190 --------EEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 226
EE +++ F CG + V+L+R++ T IGKG GYV F
Sbjct: 298 VGNLPYKIEETAIQEHFSDCGSVLAVKLVRNKVTGIGKGCGYVLF 342
>gi|334322146|ref|XP_001378610.2| PREDICTED: RNA-binding protein 34-like [Monodelphis domestica]
Length = 510
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 53/133 (39%), Positives = 81/133 (60%), Gaps = 1/133 (0%)
Query: 56 SMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALEM 115
S FK YG++E VRFRS+ A TL +K +VH ++ ++N YV FK + EKAL+
Sbjct: 191 SFFKEYGQIECVRFRSLIPAKSTLSKKIAAIKREVHPEQKSINGYVVFKEESAAEKALKR 250
Query: 116 NGHVIDEH-TIRVDKALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQ 174
NG I E +RV+ T S+F+GN+P++ EE +++ F CG + V+++R++
Sbjct: 251 NGAQIAEGFPVRVELISDTPLRGKRSVFVGNLPYKIEEAAIQEHFSDCGSVLAVKIVRNK 310
Query: 175 HTNIGKGFGYVNF 187
T +GKG GYV F
Sbjct: 311 VTGVGKGCGYVLF 323
Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 38/165 (23%), Positives = 64/165 (38%), Gaps = 64/165 (38%)
Query: 125 IRVDKALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVR--------------- 169
I+V++A K N ++F+GN+P +++EL+ F+ G+I+ VR
Sbjct: 160 IQVNEAEEKIK-NKRTVFVGNLPVTCKKKELKSFFKEYGQIECVRFRSLIPAKSTLSKKI 218
Query: 170 --LIRDQHTNIGKGFGYVNFKA-------------------------------------- 189
+ R+ H GYV FK
Sbjct: 219 AAIKREVHPEQKSINGYVVFKEESAAEKALKRNGAQIAEGFPVRVELISDTPLRGKRSVF 278
Query: 190 --------EEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 226
EE +++ F CG + V+++R++ T +GKG GYV F
Sbjct: 279 VGNLPYKIEEAAIQEHFSDCGSVLAVKIVRNKVTGVGKGCGYVLF 323
>gi|156375625|ref|XP_001630180.1| predicted protein [Nematostella vectensis]
gi|156217196|gb|EDO38117.1| predicted protein [Nematostella vectensis]
Length = 962
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 62/148 (41%), Positives = 86/148 (58%), Gaps = 22/148 (14%)
Query: 60 PYGEVETVRFRSVPVADI-TLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGH 118
P E + V FR+ AD TLP +A K H +R +N YV +K E+ +A+ NG
Sbjct: 695 PNNEDKDVGFRATAGADPETLPPRA-----KFHSERHTLNGYVVYKTAENANQAIASNGE 749
Query: 119 VIDEHTIRVDKALTTTKSNSH--SIFIGNIPF-------------EAEEEELRKAFESCG 163
ID IRVD A + K++ H S+FIGN+PF EEE LR+ F +CG
Sbjct: 750 EIDGFHIRVDLA-SNDKAHDHQRSVFIGNLPFVLIQNPKSFVFVPNIEEEPLRELFTTCG 808
Query: 164 EIDNVRLIRDQHTNIGKGFGYVNFKAEE 191
+++VRLIRD+ T IGKGFGYV F++++
Sbjct: 809 NVESVRLIRDRKTGIGKGFGYVLFESKD 836
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 53/94 (56%), Gaps = 4/94 (4%)
Query: 57 MFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMN 116
+ KP+ + T R+ +A L RK +K + H +R +N YV +K E+ +A+ N
Sbjct: 510 IHKPW-KTGTFLTRTKALAKPNLSRKVGMKRKEFHSERHTLNGYVVYKAAENANQAIASN 568
Query: 117 GHVIDEHTIRVDKALTTTKSNSH--SIFIGNIPF 148
G ID IRVD A + K++ H S+FIGN+PF
Sbjct: 569 GEEIDGFHIRVDLA-SNDKAHDHQRSVFIGNLPF 601
>gi|297742077|emb|CBI33864.3| unnamed protein product [Vitis vinifera]
Length = 421
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 55/151 (36%), Positives = 87/151 (57%), Gaps = 19/151 (12%)
Query: 58 FKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNG 117
F +GEV++VR RSVP+ D PRK I K+++ +++AY+ FK ES + +L N
Sbjct: 160 FSVFGEVQSVRIRSVPILDSKKPRKGAIISKKINDSVDSVHAYIVFKTEESAQTSLSHNM 219
Query: 118 HVIDEHTIRVDKALTTTK-----------SNSHSIFIGNIPFEAEEEELRKAFESCG--- 163
VI + IRVD+A K N ++F+GN+PF+ + EE+ + F CG
Sbjct: 220 SVIGGNHIRVDRACPPRKKLKGENDASLYDNKRTVFVGNLPFDVKAEEIYQLF--CGIDS 277
Query: 164 ---EIDNVRLIRDQHTNIGKGFGYVNFKAEE 191
I+ VR++R+ HT++GKG Y+ FK ++
Sbjct: 278 LESSIEAVRVVRNPHTSVGKGIAYILFKTKD 308
>gi|146416983|ref|XP_001484461.1| hypothetical protein PGUG_03842 [Meyerozyma guilliermondii ATCC
6260]
Length = 442
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 57/136 (41%), Positives = 80/136 (58%), Gaps = 5/136 (3%)
Query: 57 MFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKAL-EM 115
+F G VE+VRFRS+ + LPRKA K+H R ++NAYV +K A+ +
Sbjct: 189 LFSEVGPVESVRFRSIAFGE-ALPRKAAFAQKKLHGARDSVNAYVVYKEKTPSRNAVSRL 247
Query: 116 NGHVIDEHTIRVDK-ALTTTKSNSHSIFIGNIPFEAEEEELRKAF--ESCGEIDNVRLIR 172
N D H +RVD A K N +IF+GN+ FEA EEEL + F + ++++VR++R
Sbjct: 248 NAREFDHHHLRVDHVAHPVAKDNKRTIFVGNLDFEALEEELWRYFNLHTDNDVESVRVVR 307
Query: 173 DQHTNIGKGFGYVNFK 188
D TN+GKGF V FK
Sbjct: 308 DSKTNLGKGFALVQFK 323
>gi|225427165|ref|XP_002277589.1| PREDICTED: uncharacterized protein LOC100266124 [Vitis vinifera]
Length = 541
Score = 100 bits (250), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 55/151 (36%), Positives = 87/151 (57%), Gaps = 19/151 (12%)
Query: 58 FKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNG 117
F +GEV++VR RSVP+ D PRK I K+++ +++AY+ FK ES + +L N
Sbjct: 232 FSVFGEVQSVRIRSVPILDSKKPRKGAIISKKINDSVDSVHAYIVFKTEESAQTSLSHNM 291
Query: 118 HVIDEHTIRVDKALTTTK-----------SNSHSIFIGNIPFEAEEEELRKAFESCG--- 163
VI + IRVD+A K N ++F+GN+PF+ + EE+ + F CG
Sbjct: 292 SVIGGNHIRVDRACPPRKKLKGENDASLYDNKRTVFVGNLPFDVKAEEIYQLF--CGIDS 349
Query: 164 ---EIDNVRLIRDQHTNIGKGFGYVNFKAEE 191
I+ VR++R+ HT++GKG Y+ FK ++
Sbjct: 350 LESSIEAVRVVRNPHTSVGKGIAYILFKTKD 380
>gi|357117195|ref|XP_003560359.1| PREDICTED: RNA-binding protein 34-like [Brachypodium distachyon]
Length = 461
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 54/154 (35%), Positives = 88/154 (57%), Gaps = 17/154 (11%)
Query: 53 SVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKA 112
++T F +GEVE+VR RSVP+ D +PRK + K+++ N++AY+ FK+ + A
Sbjct: 161 ALTKEFAAFGEVESVRIRSVPLGDTKIPRKGAVIKGKINDLVDNVHAYIVFKDEQCARAA 220
Query: 113 LEMNGHVIDEHTIRVDKALTTTK---------SNSHSIFIGNIPFEAEEEELRKAFESC- 162
L N + + + IRVD A K ++F+GN+PF+ ++EEL K F C
Sbjct: 221 LSHNMALFNGNHIRVDMACPPRKKLRGEGPLYDRKRTVFVGNLPFDVKDEELYKMF--CG 278
Query: 163 -----GEIDNVRLIRDQHTNIGKGFGYVNFKAEE 191
G+++ +R++RD +++GKG YV FK E
Sbjct: 279 PSGPQGDVEAIRVVRDPDSSLGKGIAYVLFKTRE 312
>gi|281202984|gb|EFA77185.1| hypothetical protein PPL_12393 [Polysphondylium pallidum PN500]
Length = 487
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 59/139 (42%), Positives = 84/139 (60%), Gaps = 8/139 (5%)
Query: 56 SMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKAL-E 114
+ F +G ++T RFRS+PV+ RKA + HEKR NAYV + E +KA E
Sbjct: 283 AFFGRFGTIKTARFRSLPVSKEGANRKATYINKEFHEKRETCNAYVVYSKEEEAQKAADE 342
Query: 115 MNGHVIDEHTIRVDKALTTTKSN----SHSIFIGNIPFEAEEEELRKAFE-SCGEIDNVR 169
NG + E IRVD L + K N +++F+G IP+E E E+L K FE + G++ +VR
Sbjct: 343 TNGTLFKERHIRVD--LASNKHNKGKDENTVFVGGIPYELENEDLFKLFEDNIGDVMSVR 400
Query: 170 LIRDQHTNIGKGFGYVNFK 188
++RD+ T +GKGF YV FK
Sbjct: 401 IVRDKLTGLGKGFAYVEFK 419
>gi|380026003|ref|XP_003696751.1| PREDICTED: uncharacterized protein LOC100864850 [Apis florea]
Length = 632
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 88/137 (64%), Gaps = 2/137 (1%)
Query: 57 MFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMN 116
+FK +G+++T+R R + + ++ N++H K ++ AY++F + ESV+++L +N
Sbjct: 367 LFKQFGKIDTIRLRGKIAKSVNVSKRVAAIKNELHPKLKSVYAYIKFVSKESVKESLSIN 426
Query: 117 GHVIDEHTIRVDKALTTTK--SNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQ 174
G + + +RV+ + + + SIF+GN+ + ++ + K F+ CGEI++VR++RD
Sbjct: 427 GTEFEGNYLRVNASNKSENKFDSKKSIFLGNLHYNIDDNTIIKHFKQCGEIESVRVVRDN 486
Query: 175 HTNIGKGFGYVNFKAEE 191
T +GKGFGYVNFK E+
Sbjct: 487 KTGVGKGFGYVNFKNED 503
Score = 41.2 bits (95), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 30/44 (68%)
Query: 127 VDKALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRL 170
+D +L K + +IF+GN+P + +++LRK F+ G+ID +RL
Sbjct: 336 MDTSLEEIKEDERTIFVGNLPKDVTKKKLRKLFKQFGKIDTIRL 379
>gi|341893358|gb|EGT49293.1| hypothetical protein CAEBREN_16941 [Caenorhabditis brenneri]
Length = 401
Score = 100 bits (249), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 54/141 (38%), Positives = 87/141 (61%), Gaps = 3/141 (2%)
Query: 53 SVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKA 112
SV +F +G V +VR R++ + L ++ K+++K++++ YV+F+N ESVE A
Sbjct: 165 SVRRIFSDFGTVSSVRMRNLIPINEKLSKRVTHLSGKLNDKQSSLTFYVKFENEESVENA 224
Query: 113 LEMNGHVIDEHTIRVDKALTTTKS--NSHSIFIGNIPFEAEEEELRKAF-ESCGEIDNVR 169
L+ NG +++H +RVDK K +IF+GN+PFE E+ L F E G ++ VR
Sbjct: 225 LKYNGTKLEDHVVRVDKVGNKKKDFGKDLAIFVGNLPFEITEDALITFFSEQIGPVEGVR 284
Query: 170 LIRDQHTNIGKGFGYVNFKAE 190
++RD+ T GKGF +VNFK +
Sbjct: 285 IVRDKDTGKGKGFAFVNFKQD 305
>gi|395849832|ref|XP_003797517.1| PREDICTED: RNA-binding protein 34, partial [Otolemur garnettii]
Length = 406
Score = 100 bits (248), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 51/114 (44%), Positives = 71/114 (62%), Gaps = 1/114 (0%)
Query: 75 ADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNG-HVIDEHTIRVDKALTT 133
A+ TL +K K+H + N+NAYV FK+ + KAL+ NG + D IRVD A T
Sbjct: 202 AEGTLSKKLAAIKRKIHPDQKNINAYVVFKDKSAAVKALKRNGTQIADGFRIRVDLASET 261
Query: 134 TKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 187
+ + S+F+GN+P++ EE + K F CG I VR++RDQ T +GKGFGYV F
Sbjct: 262 SSRDKRSVFVGNLPYKVEESVVEKHFLDCGNIVAVRIVRDQATGLGKGFGYVLF 315
>gi|320580392|gb|EFW94615.1| hypothetical protein HPODL_4115 [Ogataea parapolymorpha DL-1]
Length = 345
Score = 99.8 bits (247), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 61/154 (39%), Positives = 87/154 (56%), Gaps = 9/154 (5%)
Query: 41 PSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAY 100
P+ + + + ++FKP+G++E++RFRS V LPRKA ++ V + T N Y
Sbjct: 92 PTAIMASKKSTKELKALFKPFGKIESMRFRSFAVQS-NLPRKAAYILHNVKDDDT-TNCY 149
Query: 101 VRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTK-SNSHSIFIGNIPFEAEEEELRKAF 159
+ F+ E KA+E+NG V +H +RVD K N S+F+GN+ FE EE L + F
Sbjct: 150 MVFEKEEDSLKAVELNGTVFMDHHLRVDHVAQPLKHDNKLSVFVGNLDFEETEESLWRFF 209
Query: 160 -ESCGE-----IDNVRLIRDQHTNIGKGFGYVNF 187
E+C I NVRL+RD TN GKGF V F
Sbjct: 210 NETCSPDKSNVIANVRLVRDSKTNYGKGFAIVQF 243
>gi|50287177|ref|XP_446018.1| hypothetical protein [Candida glabrata CBS 138]
gi|74691041|sp|Q6FUS6.1|NOP12_CANGA RecName: Full=Nucleolar protein 12
gi|49525325|emb|CAG58942.1| unnamed protein product [Candida glabrata]
Length = 396
Score = 99.8 bits (247), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 51/127 (40%), Positives = 74/127 (58%), Gaps = 4/127 (3%)
Query: 64 VETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKAL--EMNGHVID 121
++++RFRSV D LPRK K+H+ R ++NAY+ +K + L +NG V
Sbjct: 151 IQSIRFRSVSFED-ALPRKVAFVQQKLHKSRASVNAYIVYKEQSPLLNKLIKRLNGQVFS 209
Query: 122 EHTIRVDKALTTTKSNSH-SIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGK 180
+RVD + S+F+GN+ FE +EE L K F +CG I+ VR++RD TN+GK
Sbjct: 210 NRHLRVDSITHPAPHDKQRSVFVGNLDFEEDEESLWKHFGACGSIEYVRIVRDPKTNMGK 269
Query: 181 GFGYVNF 187
GF YV F
Sbjct: 270 GFAYVQF 276
>gi|384249082|gb|EIE22564.1| hypothetical protein COCSUDRAFT_63712 [Coccomyxa subellipsoidea
C-169]
Length = 557
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 60/174 (34%), Positives = 87/174 (50%), Gaps = 17/174 (9%)
Query: 54 VTSMFKPYGEVETVRFRSVPVA-DITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKA 112
+ F YG VE+VR RS+P+ D LPR A + V E R + NAYV F + S A
Sbjct: 255 IKQTFSQYGTVESVRLRSLPLKEDTKLPRHAAVAAGAVDESRGSANAYVVFSSGGSASHA 314
Query: 113 LEMNGHVIDEHTIRVDKALTTTKS-----------NSHSIFIGNIPFEAEEEELRKAF-- 159
L N + IRVD+A +K ++ S+F+GN+PF+ ++EEL + F
Sbjct: 315 LAHNMREFEGRHIRVDRAAAVSKGTAGGGTQVLYESARSVFVGNLPFDTQDEELIELFGD 374
Query: 160 --ESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIR 211
G + VR++RD T++GKG +V F R A + G + R IR
Sbjct: 375 GKGGPGNVTAVRIVRDPKTSVGKGIAFVEFSG-RPAARMAMSADGRVLRGRQIR 427
>gi|242037365|ref|XP_002466077.1| hypothetical protein SORBIDRAFT_01g000750 [Sorghum bicolor]
gi|241919931|gb|EER93075.1| hypothetical protein SORBIDRAFT_01g000750 [Sorghum bicolor]
Length = 440
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/151 (36%), Positives = 86/151 (56%), Gaps = 13/151 (8%)
Query: 54 VTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKAL 113
+T F +GE+E+VR RSVP+ D L RK + KV+E N++AY+ FK+ +S AL
Sbjct: 146 LTKEFAAFGEIESVRIRSVPLVDTKLSRKGAVLQGKVNELVDNVHAYIVFKDEQSARTAL 205
Query: 114 EMNGHVIDEHTIRVDKALTTTK---------SNSHSIFIGNIPFEAEEEELRKAF----E 160
N + + IRVD A K ++F+GN+PF+ ++EE+ + F
Sbjct: 206 SHNMALFGGNHIRVDMACPPRKKLRGEGPLYDRKRTVFVGNLPFDVKDEEVYQVFCGSSG 265
Query: 161 SCGEIDNVRLIRDQHTNIGKGFGYVNFKAEE 191
S G+++ +R+IRD +++GKG YV FK E
Sbjct: 266 SEGDVEAIRVIRDPSSSLGKGIAYVLFKTRE 296
>gi|448512989|ref|XP_003866856.1| Nop12 protein [Candida orthopsilosis Co 90-125]
gi|380351194|emb|CCG21417.1| Nop12 protein [Candida orthopsilosis Co 90-125]
Length = 466
Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 51/134 (38%), Positives = 80/134 (59%), Gaps = 4/134 (2%)
Query: 57 MFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMN 116
+FK +G+++++RFRS+ + +LPRK +HE R ++NAY+ F + A ++N
Sbjct: 190 LFKEFGKIDSIRFRSISFGE-SLPRKVSFAKKSLHESRDSVNAYIVFAEKSASLTAKKLN 248
Query: 117 GHVIDEHTIRVDK-ALTTTKSNSHSIFIGNIPFEAEEEELRKAFES--CGEIDNVRLIRD 173
V + H +RVD A K N +IF+GN+ FE +EE L F ++++VR+IRD
Sbjct: 249 ATVFENHHLRVDHVAHPAPKDNKRTIFVGNLDFEEKEESLWTYFNDKLDNDVESVRIIRD 308
Query: 174 QHTNIGKGFGYVNF 187
TN+GKGF V F
Sbjct: 309 SKTNMGKGFALVQF 322
>gi|308477111|ref|XP_003100770.1| hypothetical protein CRE_15490 [Caenorhabditis remanei]
gi|308264582|gb|EFP08535.1| hypothetical protein CRE_15490 [Caenorhabditis remanei]
Length = 393
Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 50/141 (35%), Positives = 89/141 (63%), Gaps = 3/141 (2%)
Query: 53 SVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKA 112
SV +F +G + +VR R++ + L ++ K+++K+ ++ YV++ + ESVEK+
Sbjct: 157 SVRKIFSDFGAISSVRMRNLIPVNEKLTKRVTHLSGKLNDKQNSLIFYVKYNDEESVEKS 216
Query: 113 LEMNGHVIDEHTIRVDKALTTTK--SNSHSIFIGNIPFEAEEEELRKAF-ESCGEIDNVR 169
L+ NG +++H +RVDK + K +IF+GN+PF+ E+ L F E G+++ VR
Sbjct: 217 LKYNGTKLEDHIVRVDKVGSKKKEFGKDLAIFVGNLPFDITEDALITFFTEQIGQVEAVR 276
Query: 170 LIRDQHTNIGKGFGYVNFKAE 190
++RD+ T +GKGF +VNFK +
Sbjct: 277 IVRDKATGVGKGFAFVNFKQD 297
>gi|307211749|gb|EFN87744.1| RNA-binding protein 34 [Harpegnathos saltator]
Length = 555
Score = 97.1 bits (240), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 87/148 (58%), Gaps = 3/148 (2%)
Query: 47 KNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNL 106
K ++++ +F YG ++ +RFR++ + + +K +H K + AY+++K+
Sbjct: 276 KETKITTLKKVFGQYGPIDNLRFRNIVPKNPKISKKVAAIKQDIHPKIVTVVAYIKYKSE 335
Query: 107 ESVEKALEMNGHVIDEH--TIRVDKALTTTKSN-SHSIFIGNIPFEAEEEELRKAFESCG 163
ES +KAL MNG + + +++ L K N SIFIGN+ F ++ + F CG
Sbjct: 336 ESAKKALSMNGKKFEGNYVNVKIVAKLGQEKHNIKKSIFIGNLKFGMNTNDIWENFSKCG 395
Query: 164 EIDNVRLIRDQHTNIGKGFGYVNFKAEE 191
EI++VRLIRD+ T +GFGYVNFK+E+
Sbjct: 396 EIESVRLIRDKKTGQTRGFGYVNFKSED 423
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 58/153 (37%), Gaps = 65/153 (42%)
Query: 140 SIFIGNIPFEAEEEELRKAFESCGEIDNVR-----------------LIRDQHTNIGKGF 182
+IFI NIP E + L+K F G IDN+R + +D H I
Sbjct: 268 TIFIDNIPKETKITTLKKVFGQYGPIDNLRFRNIVPKNPKISKKVAAIKQDIHPKIVTVV 327
Query: 183 GYVNFKAEEE------------------------------------------------EL 194
Y+ +K+EE ++
Sbjct: 328 AYIKYKSEESAKKALSMNGKKFEGNYVNVKIVAKLGQEKHNIKKSIFIGNLKFGMNTNDI 387
Query: 195 RKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK 227
+ F CGEI++VRLIRD+ T +GFGYVNFK
Sbjct: 388 WENFSKCGEIESVRLIRDKKTGQTRGFGYVNFK 420
>gi|449462029|ref|XP_004148744.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein
LOC101206555 [Cucumis sativus]
Length = 559
Score = 97.1 bits (240), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 61/153 (39%), Positives = 85/153 (55%), Gaps = 22/153 (14%)
Query: 58 FKPYGEVETVRFRSVPV--ADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALEM 115
F +GE+++VR RSVP+ A+ PRK I K++E + +AYV FK ES + +L
Sbjct: 236 FSQFGEIDSVRIRSVPIDIANSKKPRKGAIISKKLNEAADSSHAYVVFKTEESAQASLSH 295
Query: 116 NGHVIDEHTIRVDKALTTTK----------SNSHSIFIGNIPFEAEEEELRKAFESCGEI 165
N V + IRVD+A K ++F+GN+PF+ ++EEL + F CG I
Sbjct: 296 NMAVFAGNHIRVDRACPPHKKLKVGNGPIYDPKRTVFVGNLPFDVKDEELYQLF--CG-I 352
Query: 166 DN-------VRLIRDQHTNIGKGFGYVNFKAEE 191
DN VR+IRD N+GKGF YV FK E
Sbjct: 353 DNMGSSVEAVRVIRDPKVNVGKGFAYVFFKTRE 385
>gi|320168946|gb|EFW45845.1| hypothetical protein CAOG_03829 [Capsaspora owczarzaki ATCC 30864]
Length = 617
Score = 96.7 bits (239), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 51/113 (45%), Positives = 69/113 (61%), Gaps = 3/113 (2%)
Query: 79 LPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALEM-NGHVIDEHTIRVDKALTTTKSN 137
L RK K+H +R MNAYV + +A NG V++ +RVD A + K +
Sbjct: 361 LDRKVAFARGKLHPERHVMNAYVVMREAAVARRAALALNGTVLEGKHLRVDIASNSNKPH 420
Query: 138 SH--SIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK 188
H S+F+GN+P AEEE L +AF CG+I VRL+RD TN+GKGFG+V+FK
Sbjct: 421 DHRKSVFVGNLPMNAEEEALWEAFGKCGDIATVRLVRDAETNVGKGFGFVSFK 473
>gi|328785951|ref|XP_003250682.1| PREDICTED: hypothetical protein LOC411091 [Apis mellifera]
Length = 642
Score = 96.3 bits (238), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 47/133 (35%), Positives = 84/133 (63%), Gaps = 2/133 (1%)
Query: 61 YGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVI 120
+G+++T+R R + ++ N++H K ++ AY++F + ESV+++L MNG
Sbjct: 381 FGKIDTIRLRGKIAKSANVSKRVAAIKNELHPKLKSVYAYIKFVSKESVKESLSMNGTEF 440
Query: 121 DEHTIRVDKALTTTK--SNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNI 178
+ + +RV+ + + + SIF+GN+ + ++ + K F+ CGEI++VR+IRD T +
Sbjct: 441 EGNYLRVNASNKSENKFDSKKSIFLGNLHYNIDDNTIIKHFKQCGEIESVRVIRDNKTGV 500
Query: 179 GKGFGYVNFKAEE 191
GKGFGYVNFK E+
Sbjct: 501 GKGFGYVNFKNED 513
>gi|226500848|ref|NP_001140275.1| uncharacterized protein LOC100272319 [Zea mays]
gi|194698806|gb|ACF83487.1| unknown [Zea mays]
gi|413932387|gb|AFW66938.1| hypothetical protein ZEAMMB73_491336 [Zea mays]
Length = 443
Score = 96.3 bits (238), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 53/147 (36%), Positives = 84/147 (57%), Gaps = 13/147 (8%)
Query: 58 FKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNG 117
F +GE+E+VR RSVP+ D L R+ + KV+ N++AY+ FK+ +S AL N
Sbjct: 153 FAAFGEIESVRIRSVPLVDTKLSRRGAVLQGKVNGLVDNVHAYIVFKDEQSARAALSHNM 212
Query: 118 HVIDEHTIRVDKALTTTK---------SNSHSIFIGNIPFEAEEEELRKAFESC----GE 164
+ + IRVD A K ++F+GN+PF+ ++EE+ +AF S G+
Sbjct: 213 ALFGGNHIRVDMACPPRKKLRGEGPLYDRKRTVFVGNLPFDVKDEEVYQAFCSSSGSEGD 272
Query: 165 IDNVRLIRDQHTNIGKGFGYVNFKAEE 191
++ +R+IRD +++GKG YV FK E
Sbjct: 273 VEAIRVIRDPSSSLGKGIAYVLFKTRE 299
>gi|354546721|emb|CCE43453.1| hypothetical protein CPAR2_210970 [Candida parapsilosis]
Length = 473
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 53/134 (39%), Positives = 79/134 (58%), Gaps = 4/134 (2%)
Query: 57 MFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMN 116
+FK +G+++++RFRS+ D LPRK +H R ++NAYV F S A ++N
Sbjct: 196 LFKQFGKIDSIRFRSISF-DENLPRKVSFAKKSLHNSRDSVNAYVVFVEKSSSLAAKKLN 254
Query: 117 GHVIDEHTIRVDK-ALTTTKSNSHSIFIGNIPFEAEEEELRKAFES--CGEIDNVRLIRD 173
V + H +RVD A K N +IF+GN+ FE +EE L F + ++++VR+IRD
Sbjct: 255 AIVFENHHLRVDHVAHPAPKDNKRTIFVGNLDFEEKEESLWNYFNNKLDNDVESVRIIRD 314
Query: 174 QHTNIGKGFGYVNF 187
TN+GKGF V F
Sbjct: 315 SKTNMGKGFALVQF 328
>gi|167531199|ref|XP_001748165.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163773285|gb|EDQ86926.1| predicted protein [Monosiga brevicollis MX1]
Length = 454
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 62/171 (36%), Positives = 93/171 (54%), Gaps = 27/171 (15%)
Query: 41 PSLTKSKNHALSSVTSMFKPYGEVETVRFRSV-----PVADITLPRKACIKMNK-VHEKR 94
P+ K+K ++ +F GE+E++R R+V P+A P A + K + ++
Sbjct: 111 PATVKAK-----ALKELFADCGEIESIRLRTVVRCCCPLA--VSPAYADPALRKRLASEQ 163
Query: 95 TNMNAYVRFKNLESVEKALEM--------------NGHVIDEHTIRVDKALTTTKSNSHS 140
++MNAYV F +V +AL + NG H +RV +A T T S
Sbjct: 164 SSMNAYVVFTADAAVTQALTLFSPGMPLADIWTFSNGVEFQGHHLRVTRAETKTFDLHRS 223
Query: 141 IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEE 191
IF+GN+PF+A EEEL AF+SCG ++ VR++RD+ IGKGF YV F+ E
Sbjct: 224 IFVGNLPFDASEEELHGAFDSCGTVEGVRIVRDKKYAIGKGFAYVLFELAE 274
Score = 37.7 bits (86), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 24/34 (70%)
Query: 137 NSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRL 170
+ +IF+GN+P + + L++ F CGEI+++RL
Sbjct: 101 TARTIFVGNLPATVKAKALKELFADCGEIESIRL 134
>gi|150865243|ref|XP_001384380.2| hypothetical protein PICST_59522 [Scheffersomyces stipitis CBS
6054]
gi|149386499|gb|ABN66351.2| predicted protein [Scheffersomyces stipitis CBS 6054]
Length = 447
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 55/135 (40%), Positives = 78/135 (57%), Gaps = 6/135 (4%)
Query: 58 FKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALE-MN 116
F +G +++VRFRS+ LPRK I +H+ R NAYV FK E+ KA+ N
Sbjct: 171 FSDFGAIDSVRFRSISFE--GLPRKVAIATKNLHKSRGTCNAYVVFKEKEASLKAVSGAN 228
Query: 117 GHVIDEHTIRVDK-ALTTTKSNSHSIFIGNIPFEAEEEELRKAFES--CGEIDNVRLIRD 173
V + +RVD A K N +IF+GN+ FE EEE L + F + ++++VR++RD
Sbjct: 229 AKVFENFHLRVDHVAHPAPKDNRRTIFVGNLDFEEEEENLWRYFNTKLDNDVESVRVVRD 288
Query: 174 QHTNIGKGFGYVNFK 188
TN+GKGF V FK
Sbjct: 289 SKTNVGKGFALVQFK 303
>gi|391336574|ref|XP_003742654.1| PREDICTED: nucleolar protein 12-like [Metaseiulus occidentalis]
Length = 411
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 50/135 (37%), Positives = 79/135 (58%)
Query: 54 VTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKAL 113
V +F+ G++ VRF + A +P +A IK + ++ T ++A+V FK+ SV+ A+
Sbjct: 174 VKRLFEKCGDILFVRFANAIPAKAGIPVEAAIKKRSLIKEGTTISAFVVFKDASSVQTAI 233
Query: 114 EMNGHVIDEHTIRVDKALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRD 173
++NG + H +RVD+ + S+F GNIPF+ ++ L FE G ID VR++RD
Sbjct: 234 DLNGIEYEGHHLRVDRREASNIPQKRSVFCGNIPFDTTDDALWDFFEEAGAIDYVRVVRD 293
Query: 174 QHTNIGKGFGYVNFK 188
T IGKG +V FK
Sbjct: 294 NETGIGKGIAFVVFK 308
>gi|440803738|gb|ELR24621.1| RNA recognition motif domain containing protein [Acanthamoeba
castellanii str. Neff]
Length = 411
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 55/148 (37%), Positives = 80/148 (54%), Gaps = 13/148 (8%)
Query: 57 MFKPYGEVETVRFRSVPVADITLPR------KACIKMNKVHEKRTNMNAYVRFKNLESVE 110
+F PYG+++++RFRSV A P+ KA H R N YV F +S
Sbjct: 160 IFAPYGKIQSIRFRSVAFA---FPKRKNGDKKAAFLGKHFHPDRDTCNVYVVFAEKDSAL 216
Query: 111 KALEMNGHVIDEHT----IRVDKALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEID 166
KAL N I+ + VD A T + + + F+GN+PF +EELR FES G +
Sbjct: 217 KALAANNTKIELSDGVAHLSVDLAYAPTWNMARAAFVGNLPFSIRDEELRSHFESAGTVK 276
Query: 167 NVRLIRDQHTNIGKGFGYVNFKAEEEEL 194
VR++RD T +GKGFG+V F+ +++ L
Sbjct: 277 RVRIVRDSATFMGKGFGFVEFENKDDLL 304
>gi|449516037|ref|XP_004165054.1| PREDICTED: RNA-binding protein 34-like [Cucumis sativus]
Length = 410
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 60/153 (39%), Positives = 85/153 (55%), Gaps = 22/153 (14%)
Query: 58 FKPYGEVETVRFRSVPV--ADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALEM 115
F +GE+++VR RSVP+ A+ PRK I K++E + +AYV FK ES + +L
Sbjct: 87 FSQFGEIDSVRIRSVPIDIANSKKPRKGAIISKKLNEAADSSHAYVVFKTEESAQASLSH 146
Query: 116 NGHVIDEHTIRVDKALTTTK----------SNSHSIFIGNIPFEAEEEELRKAFESCGEI 165
N V + IRVD+A + ++F+GN+PF+ ++EEL + F CG I
Sbjct: 147 NMAVFAGNHIRVDRACPPHEKLKVGNGPIYDPKRTVFVGNLPFDVKDEELYQLF--CG-I 203
Query: 166 DN-------VRLIRDQHTNIGKGFGYVNFKAEE 191
DN VR+IRD N+GKGF YV FK E
Sbjct: 204 DNMGSSVEAVRVIRDPKVNVGKGFAYVFFKTRE 236
>gi|344228239|gb|EGV60125.1| RNA-binding domain-containing protein [Candida tenuis ATCC 10573]
Length = 430
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/135 (37%), Positives = 80/135 (59%), Gaps = 5/135 (3%)
Query: 57 MFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALEM- 115
+F G V+++RFRS+ D LPRK H R N+N+YV F+ E+ KA+++
Sbjct: 162 LFANVGPVQSIRFRSISF-DQALPRKIAFAQKSFHANRQNINSYVVFETKEASLKAVDLL 220
Query: 116 NGHVIDEHTIRVDKAL-TTTKSNSHSIFIGNIPFEAEEEELRKAF--ESCGEIDNVRLIR 172
N V D+ ++VD T K N ++F+GN+ F+ +EE L K F + ++++VR++R
Sbjct: 221 NATVFDQFHLKVDHVTHPTAKDNKRTVFVGNLDFDEQEETLWKYFNAHTANDVESVRIVR 280
Query: 173 DQHTNIGKGFGYVNF 187
D TN+GKGF V F
Sbjct: 281 DAKTNLGKGFALVQF 295
>gi|169219255|gb|ACA50448.1| putative RNA recognition motif-containing protein [Cucumis sativus]
Length = 566
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 61/153 (39%), Positives = 84/153 (54%), Gaps = 22/153 (14%)
Query: 58 FKPYGEVETVRFRSVPV--ADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALEM 115
F +GE+++VR RSVP+ A+ PRK I K++E + +AYV FK ES +L
Sbjct: 243 FSQFGEIDSVRIRSVPIDIANSKKPRKGAIISKKLNEAADSSHAYVVFKTEESAWASLSH 302
Query: 116 NGHVIDEHTIRVDKALTTTK----------SNSHSIFIGNIPFEAEEEELRKAFESCGEI 165
N V + IRVD+A K ++F+GN+PF+ ++EEL + F CG I
Sbjct: 303 NMAVFAGNHIRVDRACPPHKKLKVGNGPIYDPKRTVFVGNLPFDVKDEELYQLF--CG-I 359
Query: 166 DN-------VRLIRDQHTNIGKGFGYVNFKAEE 191
DN VR+IRD N+GKGF YV FK E
Sbjct: 360 DNMGSSVEAVRVIRDPKVNVGKGFAYVFFKTRE 392
>gi|224071371|ref|XP_002303427.1| predicted protein [Populus trichocarpa]
gi|222840859|gb|EEE78406.1| predicted protein [Populus trichocarpa]
Length = 491
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 82/148 (55%), Gaps = 14/148 (9%)
Query: 58 FKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNG 117
F +GEVE++R RS+P+ + +PRK I + K ++ +++AY+ F +S E +L N
Sbjct: 188 FSKFGEVESLRIRSMPITESKIPRKGAILLKKFNDNADSVHAYIVFNTEQSAEASLTHNM 247
Query: 118 HVIDEHTIRVDKALTTTK----------SNSHSIFIGNIPFEAEEEELRKAFES----CG 163
V+ + IRVD+A K N ++F+GN+PF+ ++EE+ + F
Sbjct: 248 AVVGGNHIRVDRACPPRKKLKGSDAPLYDNKRTVFVGNLPFDVKDEEIYQLFTGIKDLAS 307
Query: 164 EIDNVRLIRDQHTNIGKGFGYVNFKAEE 191
I+ VR+IR H +GKG YV FK E
Sbjct: 308 SIEAVRVIRHPHIGLGKGIAYVLFKTRE 335
>gi|326428919|gb|EGD74489.1| hypothetical protein PTSG_05853 [Salpingoeca sp. ATCC 50818]
Length = 481
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 53/146 (36%), Positives = 84/146 (57%), Gaps = 2/146 (1%)
Query: 48 NHALSSVTSMFKPYGEVETVRFRSVPV-ADITLPRKACIKMNKVHEKRTNMNAYVRFKNL 106
N ++ +F +G++E+ RFR+ + A + A + KV + ++NAYV F
Sbjct: 131 NTKPKALKKLFSQFGKIESCRFRTTNLMAHKGGAKAAVLLRRKVGGEENSVNAYVVFAED 190
Query: 107 ESVEKALEMNGHVIDEHTIRVDKALTTTK-SNSHSIFIGNIPFEAEEEELRKAFESCGEI 165
AL+ NG V +E +RVD A + T+ + ++F+GN+PF+ EEEL AF+ G +
Sbjct: 191 AMARAALKCNGMVFNERHLRVDMAGSNTRLPPTKTVFVGNLPFDVTEEELYAAFDEAGTV 250
Query: 166 DNVRLIRDQHTNIGKGFGYVNFKAEE 191
VR+IRD+ +GKGF YV+F EE
Sbjct: 251 AGVRVIRDKVLRVGKGFAYVSFALEE 276
>gi|326529257|dbj|BAK01022.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 466
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 51/154 (33%), Positives = 87/154 (56%), Gaps = 17/154 (11%)
Query: 53 SVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKA 112
++T F +G V++VR RSVP+ D +PRK + K+++ N++AY+ FK+ + A
Sbjct: 167 ALTKEFATFGVVDSVRIRSVPLGDTKIPRKGAVIKGKINDSVDNVHAYIVFKDEQCARTA 226
Query: 113 LEMNGHVIDEHTIRVDKALTTTK---------SNSHSIFIGNIPFEAEEEELRKAFESC- 162
L N + + + IRVD A K ++F+GN+PF+ ++EEL + F C
Sbjct: 227 LSHNMALFNGNHIRVDMACPPRKKLKGDGPLYDRKRTVFVGNLPFDVKDEELYQLF--CG 284
Query: 163 -----GEIDNVRLIRDQHTNIGKGFGYVNFKAEE 191
G+++ +R++RD +++GKG YV FK E
Sbjct: 285 PSGPQGDVEAIRVVRDPDSSLGKGIAYVLFKTRE 318
>gi|224047848|ref|XP_002191823.1| PREDICTED: RNA-binding protein 34 [Taeniopygia guttata]
Length = 428
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 55/136 (40%), Positives = 87/136 (63%), Gaps = 2/136 (1%)
Query: 54 VTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKAL 113
+TS+FK YG ++++RFRS+ A+ T+ +K +KVH ++NAYV FK + AL
Sbjct: 189 LTSLFKKYGRIQSIRFRSLIPAEDTVSKKVAAIKHKVHPNAKSVNAYVVFKEECDAQNAL 248
Query: 114 EMNG-HVIDEHTIRVDKALTTT-KSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLI 171
+ NG + IRVD A T+ N S+F+GN+ ++ ++ +R+ F+ CG+I VR++
Sbjct: 249 KENGTEIASGFHIRVDTASKTSLHDNKRSVFVGNLSYDIRDDAVREHFQVCGDIVGVRVV 308
Query: 172 RDQHTNIGKGFGYVNF 187
RD+ T +GKGFGYV F
Sbjct: 309 RDRRTGLGKGFGYVLF 324
>gi|348685768|gb|EGZ25583.1| hypothetical protein PHYSODRAFT_479368 [Phytophthora sojae]
Length = 379
Score = 94.4 bits (233), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 60/180 (33%), Positives = 93/180 (51%), Gaps = 33/180 (18%)
Query: 54 VTSMFKPYGEVETVRFRSVPVADIT--------LPRKACIKMNKVHEKRTNMNAYVRFKN 105
+ + F G+VE+VR R +P+A L K C + + N NAYV F
Sbjct: 90 IKTHFSVCGKVESVRLRHMPIAGCAVGEAGNQKLMMKVCANKKILTTAKDNCNAYVIFAE 149
Query: 106 LESVEKALEMNGHVIDEHTIRVDKALTTTKSNSHSIFIGNIPFEAEEEELRKAF------ 159
SVE AL++NG ++ + IRVD++ ++ S+F+GN+PF+ +E++++ F
Sbjct: 150 ESSVEDALKLNGTILVQKKIRVDRSTPVIDAH-RSVFVGNVPFKCTDEQMQQFFAKHLRS 208
Query: 160 -ESCGEIDNVRLIRDQHTNIGKGFGYV---------------NFKAEEEELRKAFESCGE 203
E I+NVRLIRD+ + +GKGFGY+ N K E ELR + CG+
Sbjct: 209 EEEPEPIENVRLIRDRESGLGKGFGYLLLKTPALVAKTLALRNLKMETRELR--VQVCGK 266
>gi|300176269|emb|CBK23580.2| unnamed protein product [Blastocystis hominis]
Length = 276
Score = 94.0 bits (232), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 60/164 (36%), Positives = 89/164 (54%), Gaps = 26/164 (15%)
Query: 52 SSVTSMFKPYGEVETVRFRSVPVA-------DITLPRKACIKMNKVHEKRTNMNAYVRFK 104
S V +F +G + ++RFRS+ V D L +KA + NK+ E + +NAY+ ++
Sbjct: 83 SQVHKVFSKFGSIRSLRFRSISVESTPISHFDKKLLKKASVIKNKLSEDKKCVNAYIVYE 142
Query: 105 NLESVEKALEMNGHVIDEHTIRVDKALTTTKS-----NSHSIFIGNIPFEAEEEELRKAF 159
ESVE AL +N ++ + I VD+ K N ++FIGN+PF+A+EEELR F
Sbjct: 143 QKESVEAALVLNNTLLFDRHIVVDRVSKKKKPFDKERNHRTLFIGNLPFDADEEELRSFF 202
Query: 160 ESC----------GE----IDNVRLIRDQHTNIGKGFGYVNFKA 189
ES G +++VRLIR + GKGFGYV K+
Sbjct: 203 ESGMLKQKTHLEEGSHEEFVESVRLIRSKDLQKGKGFGYVTLKS 246
>gi|294656141|ref|XP_458390.2| DEHA2C16170p [Debaryomyces hansenii CBS767]
gi|218511717|sp|Q6BTS9.2|NOP12_DEBHA RecName: Full=Nucleolar protein 12
gi|199430891|emb|CAG86472.2| DEHA2C16170p [Debaryomyces hansenii CBS767]
Length = 462
Score = 94.0 bits (232), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 53/136 (38%), Positives = 79/136 (58%), Gaps = 5/136 (3%)
Query: 57 MFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKAL-EM 115
+F YG+++++RFRS+ D +PRK K+H R +NAYV F E K + ++
Sbjct: 183 LFSQYGKIQSIRFRSISFDD-AVPRKVAFAKKKLHSSRDTLNAYVVFAEKEPSLKCVPKL 241
Query: 116 NGHVIDEHTIRVDK-ALTTTKSNSHSIFIGNIPFEAEEEELRKAFES--CGEIDNVRLIR 172
N + +RVD A K N +IF+GN+ FE +EE L + F S ++++VR+IR
Sbjct: 242 NATEFEHAHLRVDHVAHPAPKDNKRTIFVGNLDFEEKEETLWRYFNSKTDNDVESVRVIR 301
Query: 173 DQHTNIGKGFGYVNFK 188
D TN+GKGF V FK
Sbjct: 302 DAKTNVGKGFALVQFK 317
>gi|303274408|ref|XP_003056525.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226462609|gb|EEH59901.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 481
Score = 93.2 bits (230), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 66/197 (33%), Positives = 97/197 (49%), Gaps = 29/197 (14%)
Query: 11 TMIPTQNRNLMSKLKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGEVETVRFR 70
T +P R+ + ++ L L P L KS +F +G V +VR R
Sbjct: 149 TALPGLPRHQAPDELLSCTVFVGNLPLTTKPKLLKS----------VFSKFGPVVSVRIR 198
Query: 71 SVPVA-DITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDK 129
SVPV + +PR I K+H +R + NAY+ FKN SV A E+N + IRVD+
Sbjct: 199 SVPVDLEGKMPRGRKIITGKLHTERKSTNAYIVFKNASSVMAATELNMQEFNGRHIRVDR 258
Query: 130 AL-TTTKSNSHS----------IFIGNIPFEAEEEELRKAFESCGE-------IDNVRLI 171
A T+K N H +F+GN+P+ +EEE+ + F E I+ VR++
Sbjct: 259 ATPPTSKGNRHGSDLAYDHSRCLFLGNLPYAVDEEEIIRFFHRSKEYPELSNSIEAVRIV 318
Query: 172 RDQHTNIGKGFGYVNFK 188
RD+ T++GKG V FK
Sbjct: 319 RDRKTSVGKGIALVLFK 335
>gi|223998584|ref|XP_002288965.1| rna-binding protein [Thalassiosira pseudonana CCMP1335]
gi|220976073|gb|EED94401.1| rna-binding protein [Thalassiosira pseudonana CCMP1335]
Length = 198
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 57/158 (36%), Positives = 87/158 (55%), Gaps = 22/158 (13%)
Query: 53 SVTSMFKPYGEVETVRFRSVPV-----ADITLPRKACIKMNKV--HEKRTNMNAYVRFKN 105
++ +FKP G V + R RS+ + + L RK C K+ + + YV FK+
Sbjct: 20 ALAGIFKPCGTVTSARLRSMALPPDQAGNQNLMRKVCANTGKLLSDNPKKSAQGYVVFKS 79
Query: 106 LESVEKALEMNGHVIDEHTIRVDKALTTTKSN-----SHSIFIGNIPFEAEEEELR---- 156
++SVE+AL++N + HTIRVD A ++ ++ S S+FIGN+P+ AEEE LR
Sbjct: 80 VDSVEEALKLNNTTYETHTIRVDHATVSSWNDEMIEPSRSVFIGNLPYGAEEETLRDLFL 139
Query: 157 KAFESCGEID------NVRLIRDQHTNIGKGFGYVNFK 188
K + G+ D VR++RD+ T KGF YV F+
Sbjct: 140 KGVGADGDDDEDPVVSGVRIVRDKETQKCKGFAYVTFR 177
>gi|321463774|gb|EFX74787.1| hypothetical protein DAPPUDRAFT_306960 [Daphnia pulex]
Length = 432
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 49/141 (34%), Positives = 78/141 (55%), Gaps = 2/141 (1%)
Query: 53 SVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKA 112
+V F G++ V R +AD +P+K + + H R +++A+VRF+ E+ + A
Sbjct: 161 TVHHFFAKCGKINAVWLRCAALADPAMPKKVAVIKQEFHPNRQSISAFVRFETNEAAQAA 220
Query: 113 LEMNGHVIDEHTIRVD--KALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRL 170
+ M G E+ I V K S IF+GN+ F+ +E L F CG+I +VR+
Sbjct: 221 VAMTGCEFQENHIAVSLLSDSNIKKQLSLGIFVGNLTFDVTDEALWLHFGECGKISDVRI 280
Query: 171 IRDQHTNIGKGFGYVNFKAEE 191
IRD+ +GKGFGYVNF++ +
Sbjct: 281 IRDRVNGMGKGFGYVNFESAD 301
>gi|307190796|gb|EFN74665.1| RNA-binding protein 34 [Camponotus floridanus]
Length = 433
Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 80/140 (57%), Gaps = 4/140 (2%)
Query: 52 SSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEK 111
+ + +F +G + +RFR++ ++ + +K ++H K T + Y+ +K+ ES +K
Sbjct: 165 AEIKKVFSKFGPINNLRFRNIVPQNLKMSKKVAAITKQIHPKVTTVVVYINYKSKESAQK 224
Query: 112 ALEMNGHVIDEHTIRV----DKALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDN 167
AL MNG + + I V DK++ +N ++FI N+ + + + K F CG+I++
Sbjct: 225 ALSMNGKIFQGNYIHVQIVSDKSMKKEWNNKKAVFIANLRYGTDNNTIWKHFGICGDIES 284
Query: 168 VRLIRDQHTNIGKGFGYVNF 187
V L+RD+ T KGFGY+NF
Sbjct: 285 VHLVRDKETGQTKGFGYINF 304
>gi|403347285|gb|EJY73063.1| RNA-binding protein 34 [Oxytricha trifallax]
Length = 412
Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 60/148 (40%), Positives = 87/148 (58%), Gaps = 8/148 (5%)
Query: 57 MFKPYGEVETVRFRSVPVA-DITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALE- 114
+FKPYG V + FRS+ + + K I + ++ + NAYV FK ES KA E
Sbjct: 146 LFKPYGNVVKIWFRSIACDHESKITHKGKIIKKEYGLQKDSKNAYVLFKTKESAIKAAEN 205
Query: 115 MNGHVIDEHTIRVDKALTTTKSNSH--SIFIGNIPFEAEEEELRKAFESCGEIDNVRLIR 172
+N + +RVD T + N + +IFIGN+P+ +E+LR FE CG+I NVR++R
Sbjct: 206 LNQIQLGNKHLRVD---TENQENDYDTTIFIGNLPWVLNDEDLRAHFEDCGKILNVRVVR 262
Query: 173 DQHTNIGKGFGYVNFKAEEEELRKAFES 200
D+ IGKG YV FK +EE+RK+ E+
Sbjct: 263 DKDNFIGKGIAYVQFKT-KEEMRKSIET 289
>gi|328874715|gb|EGG23080.1| hypothetical protein DFA_05210 [Dictyostelium fasciculatum]
Length = 450
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 56/134 (41%), Positives = 76/134 (56%), Gaps = 4/134 (2%)
Query: 58 FKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKAL-EMN 116
F YG+VE+ R RS+ RK K +EKR NAYV F+ ES +K + E N
Sbjct: 255 FSKYGKVESARLRSISTESKDSNRKDSYINKKFNEKRETCNAYVVFEKEESAQKVVAECN 314
Query: 117 GHVIDEHTIRVDKALTTTKSNS--HSIFIGNIPFEAEEEELRKAFESC-GEIDNVRLIRD 173
G + E + VD A + S ++FIGN+PFE+E EE+ F+ G +++VRL+RD
Sbjct: 315 GIIFKERHLYVDLASHKHEKGSVEETVFIGNVPFESENEEIFTLFDHAFGGVESVRLVRD 374
Query: 174 QHTNIGKGFGYVNF 187
T GKGFGYV F
Sbjct: 375 GQTGQGKGFGYVLF 388
>gi|340503205|gb|EGR29817.1| RNA binding motif protein 34, putative [Ichthyophthirius
multifiliis]
Length = 330
Score = 89.7 bits (221), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 50/141 (35%), Positives = 81/141 (57%), Gaps = 7/141 (4%)
Query: 48 NHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKV-HEKRTNMNAYVRFKNL 106
N + +FK YG++E + FRS+PV + +KA I + +V ++++ N ++ K +
Sbjct: 74 NAKSKDIQKIFKQYGKIEKIWFRSIPVEKSKIGKKAAIMLKQVKYDQQQNQQFFI--KKV 131
Query: 107 ESVEKALEMNGHVIDEHTIRVDKALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEID 166
+ + ++ + I + K L TK+ IFIGN+PF+ EE LR F CG I
Sbjct: 132 QRRQSWIKNSKKNIYINLFLNLKKLDYTKT----IFIGNLPFQITEEALRNHFIDCGNIQ 187
Query: 167 NVRLIRDQHTNIGKGFGYVNF 187
N+R+IRD +T+ GKGFGY+ F
Sbjct: 188 NLRIIRDPYTHNGKGFGYIYF 208
>gi|148679876|gb|EDL11823.1| RNA binding motif protein 34, isoform CRA_b [Mus musculus]
Length = 432
Score = 89.7 bits (221), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 47/114 (41%), Positives = 68/114 (59%), Gaps = 1/114 (0%)
Query: 75 ADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEH-TIRVDKALTT 133
A+ TL +K K H + ++NAYV FK+ + KAL+ NG I E IRVD A T
Sbjct: 216 AEGTLTKKLAAIKRKFHPDQKSINAYVVFKDESAAAKALQRNGAQIAEGFRIRVDLASET 275
Query: 134 TKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 187
+ S+F+GN+P++ E+ L + F CG I VR++R+ T +G+GFGYV F
Sbjct: 276 ASRDKRSVFVGNLPYKIEDSALEEHFLDCGSIVAVRIVRNPLTGVGRGFGYVLF 329
>gi|219119333|ref|XP_002180429.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217407902|gb|EEC47837.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 393
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 60/157 (38%), Positives = 88/157 (56%), Gaps = 23/157 (14%)
Query: 53 SVTSMFKPYGEVETVRFRSVPVADITLP----------RKACIKMNKVHEK-RTNMNAYV 101
S+ +FK G+VE+ R RS+ V + LP +K C ++V K ++++ YV
Sbjct: 107 SLAKLFKDCGKVESSRIRSLAVTGVKLPQENAGNQKLVKKVCANTSQVDTKAKSSVQGYV 166
Query: 102 RFKNLESVEKALEMNG-HVIDEHT-----IRVDKALTTTKSNSHSIFIGNIPFEAEEEEL 155
F N +++EKAL +N V DE T IRVD A + SIF+GN+P+ A+E+ L
Sbjct: 167 VFVNKDAIEKALVLNNTEVKDERTGTTRRIRVDHA-NAEYDAARSIFVGNLPYTADEDSL 225
Query: 156 RKAF-ESCG----EIDNVRLIRDQHTNIGKGFGYVNF 187
+ F E CG +I VR++RD+ T KGFGYV F
Sbjct: 226 AEHFCEGCGLNVDDIQGVRIVRDKETFQCKGFGYVLF 262
>gi|413932388|gb|AFW66939.1| hypothetical protein ZEAMMB73_491336 [Zea mays]
Length = 441
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 51/147 (34%), Positives = 84/147 (57%), Gaps = 15/147 (10%)
Query: 58 FKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNG 117
F +GE+E+VR RSVP+ ++ R+ + KV+ N++AY+ FK+ +S AL N
Sbjct: 153 FAAFGEIESVRIRSVPLTKLS--RRGAVLQGKVNGLVDNVHAYIVFKDEQSARAALSHNM 210
Query: 118 HVIDEHTIRVDKALTTTK---------SNSHSIFIGNIPFEAEEEELRKAFESC----GE 164
+ + IRVD A K ++F+GN+PF+ ++EE+ +AF S G+
Sbjct: 211 ALFGGNHIRVDMACPPRKKLRGEGPLYDRKRTVFVGNLPFDVKDEEVYQAFCSSSGSEGD 270
Query: 165 IDNVRLIRDQHTNIGKGFGYVNFKAEE 191
++ +R+IRD +++GKG YV FK E
Sbjct: 271 VEAIRVIRDPSSSLGKGIAYVLFKTRE 297
>gi|224033657|gb|ACN35904.1| unknown [Zea mays]
Length = 441
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 51/147 (34%), Positives = 84/147 (57%), Gaps = 15/147 (10%)
Query: 58 FKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNG 117
F +GE+E+VR RSVP+ ++ R+ + KV+ N++AY+ FK+ +S AL N
Sbjct: 153 FAAFGEIESVRIRSVPLTKLS--RRGAVLQGKVNGLVDNVHAYIVFKDEQSARAALSHNM 210
Query: 118 HVIDEHTIRVDKALTTTK---------SNSHSIFIGNIPFEAEEEELRKAFESC----GE 164
+ + IRVD A K ++F+GN+PF+ ++EE+ +AF S G+
Sbjct: 211 ALFGGNHIRVDMACPPRKKLRGEGPLYDRKRTVFVGNLPFDVKDEEVYQAFCSSSGSEGD 270
Query: 165 IDNVRLIRDQHTNIGKGFGYVNFKAEE 191
++ +R+IRD +++GKG YV FK E
Sbjct: 271 VEAIRVIRDPSSSLGKGIAYVLFKTRE 297
>gi|448091708|ref|XP_004197396.1| Piso0_004648 [Millerozyma farinosa CBS 7064]
gi|448096281|ref|XP_004198427.1| Piso0_004648 [Millerozyma farinosa CBS 7064]
gi|359378818|emb|CCE85077.1| Piso0_004648 [Millerozyma farinosa CBS 7064]
gi|359379849|emb|CCE84046.1| Piso0_004648 [Millerozyma farinosa CBS 7064]
Length = 450
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/136 (38%), Positives = 78/136 (57%), Gaps = 5/136 (3%)
Query: 57 MFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKAL-EM 115
+F +G+VE++R RS+ AD +PRK + E R NAYV F + K + E+
Sbjct: 190 LFSQFGKVESIRLRSISFAD-KVPRKVAFVKKTLDETRATANAYVVFAEKPASLKCVPEL 248
Query: 116 NGHVIDEHTIRVDKALTTTKS-NSHSIFIGNIPFEAEEEELRKAFE--SCGEIDNVRLIR 172
N V ++ +RVD +K+ N ++FIGN+ FE EE L + F S +++ VR++R
Sbjct: 249 NATVFEDFHLRVDHLAHPSKTDNKRTVFIGNLSFEESEETLWRYFNEVSNNDVEAVRIVR 308
Query: 173 DQHTNIGKGFGYVNFK 188
D TN GKGF +V FK
Sbjct: 309 DPKTNFGKGFAFVQFK 324
>gi|149248228|ref|XP_001528501.1| hypothetical protein LELG_01021 [Lodderomyces elongisporus NRRL
YB-4239]
gi|146448455|gb|EDK42843.1| hypothetical protein LELG_01021 [Lodderomyces elongisporus NRRL
YB-4239]
Length = 452
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 58/181 (32%), Positives = 92/181 (50%), Gaps = 40/181 (22%)
Query: 53 SVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRF-KNLESVEK 111
S +FK +G+++++RFRS+ +D LP+K +HE R ++NAYV F + +S++
Sbjct: 193 SFKRLFKEHGKIDSIRFRSIAFSD-QLPKKVSYVKKNLHESRDSVNAYVVFVEPKDSLKA 251
Query: 112 ALEMNGHVIDEHTIRVDK-ALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRL 170
A +N V ++H +RVD K N +IF+GN+ FE +EE L K F N +L
Sbjct: 252 AKALNATVFEDHHLRVDHVGEPAPKDNKRTIFVGNLDFEEKEENLWKFF-------NEKL 304
Query: 171 IRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKVSF 230
G++++VR++RD TN+GKGF V FK S
Sbjct: 305 ------------------------------DGDVESVRIVRDSVTNMGKGFALVQFKDSL 334
Query: 231 T 231
+
Sbjct: 335 S 335
>gi|260951259|ref|XP_002619926.1| hypothetical protein CLUG_01085 [Clavispora lusitaniae ATCC 42720]
gi|238847498|gb|EEQ36962.1| hypothetical protein CLUG_01085 [Clavispora lusitaniae ATCC 42720]
Length = 512
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 58/183 (31%), Positives = 86/183 (46%), Gaps = 40/183 (21%)
Query: 57 MFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLE-SVEKALEM 115
+FK G+V ++RFRS+ D +PRK +H R +NAYV F E S++ A +
Sbjct: 213 LFKSIGKVSSIRFRSIAF-DEAVPRKVAFVKKALHSTRDTVNAYVVFAEKEASMKAASRL 271
Query: 116 NGHVIDEHTIRVDK-ALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQ 174
N + D H IRVD A K N +IF+GN+ FE +EE L
Sbjct: 272 NATIFDHHHIRVDHVAHPAPKDNKRTIFVGNLDFEEQEERL------------------- 312
Query: 175 HTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKVSFTTLS 234
+ Y N K ++ +++VR++RD TN+GKGF V FK S +
Sbjct: 313 -------WRYFNSKTNDD-----------VESVRIVRDSKTNLGKGFALVQFKDSLSVDK 354
Query: 235 SIF 237
++
Sbjct: 355 ALL 357
>gi|301111538|ref|XP_002904848.1| RNA-binding protein, putative [Phytophthora infestans T30-4]
gi|262095178|gb|EEY53230.1| RNA-binding protein, putative [Phytophthora infestans T30-4]
Length = 382
Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 86/176 (48%), Gaps = 33/176 (18%)
Query: 58 FKPYGEVETVRFRSVPVADIT--------LPRKACIKMNKVHEKRTNMNAYVRFKNLESV 109
F G+VE+VR R +P+A L K C + + N NAYV F S
Sbjct: 94 FSVCGQVESVRLRHLPIAGCAVGDAGNQKLMMKVCANKKILTTAKDNCNAYVTFVEESSA 153
Query: 110 EKALEMNGHVIDEHTIRVDKALTTTKSNSHSIFIGNIPFEAEEEELRKAF-------ESC 162
E A+++NG + + IRVD+ + S+FIGN+PF+ +E++ + F +
Sbjct: 154 EAAIKLNGTTLVQMKIRVDRCEPVIDAR-RSVFIGNVPFKCTDEQIFQFFLKRLKSDDEP 212
Query: 163 GEIDNVRLIRDQHTNIGKGFGYV---------------NFKAEEEELRKAFESCGE 203
I+NVRLIRD+ + +GKGFGY+ N K E ELR + CG+
Sbjct: 213 EPIENVRLIRDRESGLGKGFGYLLLKTPALVAKTLTLRNLKMETRELR--VQVCGK 266
Score = 37.4 bits (85), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 25/32 (78%)
Query: 139 HSIFIGNIPFEAEEEELRKAFESCGEIDNVRL 170
++F+GN+ +A +++++K F CG++++VRL
Sbjct: 74 RTVFVGNVSLDATQKDIKKHFSVCGQVESVRL 105
>gi|255074609|ref|XP_002500979.1| predicted protein [Micromonas sp. RCC299]
gi|226516242|gb|ACO62237.1| predicted protein [Micromonas sp. RCC299]
Length = 543
Score = 86.7 bits (213), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 54/164 (32%), Positives = 92/164 (56%), Gaps = 29/164 (17%)
Query: 54 VTSMFKPYGEVETVRFRSVPV-ADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKA 112
+ ++F +G V++VR R+VPV + +PR + K+ E R + NAYV FK +SVE A
Sbjct: 234 LKTLFSEFGAVDSVRLRNVPVDPEGKMPRGGKVITGKLVENRKSTNAYVVFKEEKSVEAA 293
Query: 113 LE-MNGHVIDEHTIRVDKALT-TTKSN-------------------SHSIFIGNIPFEAE 151
+ MN +D +RVD+A+ + K+N + S+F+GN+P++ +
Sbjct: 294 CKGMNMREVDGRHVRVDRAVAPSAKANETIAKEKGANAGGEVAYDHTRSLFLGNLPYDVD 353
Query: 152 EEELRKAF-------ESCGEIDNVRLIRDQHTNIGKGFGYVNFK 188
EE++ + F E G ++ VR++RD+ TN+GKG +V F+
Sbjct: 354 EEDVIRLFHRSKEYPELNGAVEAVRVVRDRKTNLGKGIAFVLFR 397
>gi|428181217|gb|EKX50082.1| hypothetical protein GUITHDRAFT_104476 [Guillardia theta CCMP2712]
Length = 358
Score = 86.7 bits (213), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 60/162 (37%), Positives = 87/162 (53%), Gaps = 26/162 (16%)
Query: 53 SVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKA 112
S+ F+ +G +E+VR RS+P+++ LP+K I + V+ +R NAYVRFK SV KA
Sbjct: 131 SIKKFFQEFGFIESVRMRSIPISNPKLPKKTSIALGMVNSERETCNAYVRFKEKGSVAKA 190
Query: 113 LEMNGHVIDEHTIRVDKALTTTKSNSH-SIFIGNIPFEAEEEELRKAFESCGEIDNVRLI 171
L NG +++ H I+VD A + N S+F+GN+PF A K F
Sbjct: 191 LSKNGSLMEGHRIKVDHANISKNYNVRLSVFVGNLPFNAG-----KRFH----------- 234
Query: 172 RDQHTNIGKGFGYVNF-KAEEEELR-KAFESCGEIDNVRLIR 211
+H GFGYV F AEE +L K E+ E +R++R
Sbjct: 235 --KH-----GFGYVTFTNAEEVQLALKKHEAKFEGRALRVVR 269
>gi|312075541|ref|XP_003140463.1| RNA recognition domain-containing protein [Loa loa]
gi|307764379|gb|EFO23613.1| RNA recognition domain-containing protein [Loa loa]
Length = 359
Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 50/146 (34%), Positives = 75/146 (51%), Gaps = 10/146 (6%)
Query: 48 NHALSS----VTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRF 103
N LSS + +F +G VE+VR A+ + +K + ++ YV+F
Sbjct: 139 NAPLSSSRKGIKKLFSQFGAVESVRLHCFIAANEKITKK-----RDIPSGVRSLTFYVKF 193
Query: 104 KNLESVEKALEMNGHVIDEHTIRVDKALTTTKSNSHS-IFIGNIPFEAEEEELRKAFESC 162
KN +S E AL +NG D + +RVD K N + +F+GN+P++ E EL FE
Sbjct: 194 KNAKSKEAALALNGEKYDGNLLRVDSCCAKRKYNCRTTVFVGNLPYDVSENELIAHFEMS 253
Query: 163 GEIDNVRLIRDQHTNIGKGFGYVNFK 188
G + VR++RD T KGF +V FK
Sbjct: 254 GNVSFVRIVRDSRTGNSKGFAFVAFK 279
>gi|402078123|gb|EJT73472.1| nucleolar protein 12 [Gaeumannomyces graminis var. tritici
R3-111a-1]
Length = 532
Score = 84.0 bits (206), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 64/226 (28%), Positives = 113/226 (50%), Gaps = 26/226 (11%)
Query: 11 TMIPTQNRNLMSKLK--VFL-NIWKMALKLKMNPSLTKSKNHALSSVTSMFK----PYGE 63
+++P+ ++ + K VFL N+ A+ K +K L+ ++S+FK P
Sbjct: 156 SLLPSSEKSELDKAARTVFLSNVSTEAITSKA------AKKQLLAHLSSVFKKDASPPQS 209
Query: 64 VETVRFRSVPVADITLPRKACIKMNKVHEKRT-NMNAYVRFKNLESVEKAL-EMNGHVID 121
++++RFRSVPVA +P++A + V E T + NAYV + + + A+ +NG ++
Sbjct: 210 IDSLRFRSVPVATAAMPKRAAVITQAVMEATTKSANAYVVYSDTAAARVAVASLNGTIVL 269
Query: 122 EHTIRVDK-ALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGK 180
E +RVD A + +F+GN+ F +E + + G+ + R +
Sbjct: 270 ERHLRVDSVAHPAPVDHKRCVFVGNLGFVDDETVMNTTVDDDGKEKTEKRKRTK------ 323
Query: 181 GFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 226
V EE R +S G++++VR++RDQ T +GKG YV F
Sbjct: 324 ----VPMDVEEGLWRTFGKSAGKVESVRVVRDQTTRVGKGIAYVQF 365
>gi|452987409|gb|EME87164.1| hypothetical protein MYCFIDRAFT_22137, partial [Pseudocercospora
fijiensis CIRAD86]
Length = 261
Score = 83.2 bits (204), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 48/132 (36%), Positives = 77/132 (58%), Gaps = 5/132 (3%)
Query: 63 EVETVRFRSVPVADITLPRKACIKMNKVHEKRT-NMNAYVRFKNLESVEKALE-MNGHVI 120
+VE++RFRS P A +P+KA ++ + T + NAYV + + +A+ +NG ++
Sbjct: 51 KVESIRFRSTPYA-TAIPKKAAFAKKELMDATTKSTNAYVVYSTEKLAREAVRHLNGTIV 109
Query: 121 DEHTIRVDKALTTTK-SNSHSIFIGNIPFEAE-EEELRKAFESCGEIDNVRLIRDQHTNI 178
E +RVD K N +F+GN+ F A+ EE L + F G++++VR+IRD T +
Sbjct: 110 LERHLRVDSVAHPAKIDNRRCVFVGNLGFPADIEEGLWRTFSKSGKVESVRVIRDSTTRV 169
Query: 179 GKGFGYVNFKAE 190
GKG YV F+ E
Sbjct: 170 GKGIAYVQFEDE 181
>gi|398410594|ref|XP_003856645.1| hypothetical protein MYCGRDRAFT_30158, partial [Zymoseptoria
tritici IPO323]
gi|339476530|gb|EGP91621.1| hypothetical protein MYCGRDRAFT_30158 [Zymoseptoria tritici IPO323]
Length = 298
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/132 (37%), Positives = 73/132 (55%), Gaps = 5/132 (3%)
Query: 63 EVETVRFRSVPVADITLPRKACIKMNKVHEKRT-NMNAYVRFKNLE-SVEKALEMNGHVI 120
+VE++RFRS P A +P+KA ++ + T + NAY + + E +NG +
Sbjct: 75 KVESLRFRSTPFASA-IPKKAAFAKKELMDATTKSTNAYAVYSTPALAREACTRLNGTSV 133
Query: 121 DEHTIRVDKALTTTKSNSH-SIFIGNIPFEAE-EEELRKAFESCGEIDNVRLIRDQHTNI 178
+RVD K ++H IFIGN+ F A+ EE L + F CG +++VR+IRD T +
Sbjct: 134 LARHMRVDSVAHPAKVDNHRCIFIGNLGFPADVEEGLWRTFSKCGTVESVRVIRDSTTRV 193
Query: 179 GKGFGYVNFKAE 190
GKG YV F E
Sbjct: 194 GKGIAYVQFTDE 205
>gi|358336551|dbj|GAA55028.1| nucleolar protein 12 [Clonorchis sinensis]
Length = 459
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 58/145 (40%), Positives = 75/145 (51%), Gaps = 21/145 (14%)
Query: 64 VETVRFRSV-PVADIT--LPRK-ACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHV 119
VE+VRFR V PV T L RK A I+ NM AYV + + L +NGH
Sbjct: 170 VESVRFRGVVPVTGGTGKLARKRAVIQGEFSAGVSQNMIAYVVLTSTAGIPAGLSLNGHW 229
Query: 120 I-------DEHT--------IRVDKALT--TTKSNSHSIFIGNIPFEAEEEELRKAFESC 162
+ D T IRVD+AL + S+F+GN+PF+ +EEE+R A
Sbjct: 230 LQTKPISTDTPTDYQSSGKHIRVDRALRHRPVEQFKQSVFLGNLPFDVQEEEVRSAMSKF 289
Query: 163 GEIDNVRLIRDQHTNIGKGFGYVNF 187
G I NVRLIRD+ T KGFG+V +
Sbjct: 290 GPIANVRLIRDKETGAVKGFGFVQY 314
>gi|315046214|ref|XP_003172482.1| nucleolar protein 12 [Arthroderma gypseum CBS 118893]
gi|311342868|gb|EFR02071.1| nucleolar protein 12 [Arthroderma gypseum CBS 118893]
Length = 540
Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 93/181 (51%), Gaps = 19/181 (10%)
Query: 53 SVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRT-NMNAYVRFKNLESVEK 111
S T P ++E++RFRS + LPR+A ++ + T N YV + + + +K
Sbjct: 223 SSTDTPSPIHKIESLRFRSTAFSSTALPRRAAYAKKELMDSTTKGTNVYVVYSTVLAAKK 282
Query: 112 ALEMNGHVIDEHTIRVDKALTTTKSN-SHSIFIGNIPFEAEEEELRKAFESCGEIDNVRL 170
AL++NG ++ + IRVD + ++ + +F+GN+ F +EE E GE+
Sbjct: 283 ALKLNGTMVLDRHIRVDSVSKPSPTDHTRCVFVGNLGF-VDEETQPAPDEGDGEVK---- 337
Query: 171 IRDQHTNIGKGFGYVNFKAEEEELRKAF-ESCGE---IDNVRLIRDQHTNIGKGFGYVNF 226
+ G G V EE L + F E CG +++VR++RD+ T +GKGF YV F
Sbjct: 338 ---KKAKKGSEAGDV-----EEGLWRTFNERCGGEGVVESVRVVRDRLTRVGKGFAYVQF 389
Query: 227 K 227
K
Sbjct: 390 K 390
>gi|432104101|gb|ELK30931.1| Heterogeneous nuclear ribonucleoprotein A/B [Myotis davidii]
Length = 308
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/152 (31%), Positives = 77/152 (50%), Gaps = 6/152 (3%)
Query: 94 RTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKSNSHSIFIGNIPFEAEEE 153
R+ ++ FK+ SVEK L+ H +D I KA+ K IF+G + EA EE
Sbjct: 38 RSRGFGFILFKDAASVEKVLDQKEHKLDGRVIDPKKAMAMKKEPVKKIFVGGLNPEATEE 97
Query: 154 ELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE------SCGEIDNV 207
++R+ F GEI+ + L D +N +GF ++ FK EEE ++K E S +I+ +
Sbjct: 98 KIREYFGEFGEIEAIDLPMDPKSNKRRGFVFITFKEEEEPVKKVLEKKFHTISGSKIEAI 157
Query: 208 RLIRDQHTNIGKGFGYVNFKVSFTTLSSIFSK 239
L D +N +GF ++ FK + + K
Sbjct: 158 DLPMDPKSNKRRGFVFITFKEEEEPVKKVLEK 189
>gi|308798913|ref|XP_003074236.1| FOG: RRM domain (ISS) [Ostreococcus tauri]
gi|116000408|emb|CAL50088.1| FOG: RRM domain (ISS) [Ostreococcus tauri]
Length = 366
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/157 (33%), Positives = 85/157 (54%), Gaps = 28/157 (17%)
Query: 58 FKPYGEVETVRFRSVPV-ADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALE-M 115
F G+V++ R R+VPV AD PRK + K++ +R N A+V F+ ES +KA E +
Sbjct: 165 FGAAGKVKSARLRNVPVEADGHEPRKVKVLKGKLNAERGNATAFVVFEKAESAQKAAETL 224
Query: 116 NGHVIDEHTIRVDKALTTT-------KSNSHSIFIGNIPFEAEEE-------------EL 155
N + +RVD A + ++ S+F+G++PF ++E EL
Sbjct: 225 NMKAFEGRHVRVDLAAKPSIVSSEVVYDHTRSVFLGHLPFNVDDEDVIRLFNKNEEYPEL 284
Query: 156 RKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEE 192
RK+ E+ VR++RD+ T +GKG G+V FK +E+
Sbjct: 285 RKSVEA------VRVVRDRKTTMGKGIGFVLFKTKEQ 315
>gi|453089190|gb|EMF17230.1| hypothetical protein SEPMUDRAFT_146322 [Mycosphaerella populorum
SO2202]
Length = 565
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 89/178 (50%), Gaps = 20/178 (11%)
Query: 52 SSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRT-NMNAYVRFKNLESVE 110
SSV + KP +VE++RFRS P A +P+KA ++ + + + NAYV +
Sbjct: 244 SSVKAGPKP--KVESIRFRSTPYAS-AIPKKAAFAKKELMDATSKSTNAYVVYSTPSLAR 300
Query: 111 KALE-MNGHVIDEHTIRVDKALTTTK-SNSHSIFIGNIPFEAEEEELRKAFESCGEIDNV 168
+A + +NG V+ + +RVD K N +F+GN+ F +E ++ A E G
Sbjct: 301 EACKSLNGTVVLDRHLRVDSVAHPAKVDNRRCVFVGNLGFVDDESNIQDANEDDGREKRK 360
Query: 169 RLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 226
R GK V EE L + F CG +++VR+IRD T +GKG YV F
Sbjct: 361 R---------GKEPADV-----EEGLWRCFAKCGTVESVRVIRDNTTRVGKGIAYVQF 404
>gi|407036329|gb|EKE38119.1| RNA recognition motif (RRM, RBD, or RNP domain) containing protein
[Entamoeba nuttalli P19]
Length = 413
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 85/164 (51%), Gaps = 5/164 (3%)
Query: 52 SSVTSMFKPYGEVETVRFRSVP-VADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVE 110
+ + K +G++E+ RFR + D + +K + R N Y + E E
Sbjct: 190 AQMKKFLKQFGKLESYRFRGGAFIQDEKSKKVHFLKKEYDTKVRKTQNCYAVYATSEDAE 249
Query: 111 KAL-EMNGHVIDEHTIRVDKALTTTKSNS--HSIFIGNIPFEAEEEELRKAFESCGEIDN 167
KA E++G + +R D + K + +IF+GN+PF+ EEE+LRK F GEI+
Sbjct: 250 KAAKEIDGKEFLGYHLRADWEVNKGKKRNIRQTIFVGNLPFKMEEEQLRKLFSKAGEIER 309
Query: 168 VRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIR 211
V+++R+ + +G+G G+V F +E+++K GE R IR
Sbjct: 310 VKIVRESKSGMGRGIGFVTF-TNKEDVQKGLNMVGEKIKGRQIR 352
>gi|195453715|ref|XP_002073909.1| GK12898 [Drosophila willistoni]
gi|194169994|gb|EDW84895.1| GK12898 [Drosophila willistoni]
Length = 421
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 51/145 (35%), Positives = 79/145 (54%), Gaps = 25/145 (17%)
Query: 57 MFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTN---MNAYVRFKNLESVEKAL 113
+F+PYG V ++R R+ A K+ H++R + +NAYV ++ E +KAL
Sbjct: 167 LFEPYGTVNSIRLRT-----------AGGKLLFKHKQRKSAGSLNAYVVLQSPEVAQKAL 215
Query: 114 EMNGHVIDEHTIRVDKALTT-----TKSNSHS-----IFIGNIPFEAEEEELRKAFESCG 163
+NG E+ +RV A T K++S + +F+GN+ + A E++L F SCG
Sbjct: 216 TLNGTEFKENHLRVTLATQTGAGDGDKASSDADAKRCVFVGNLKYSATEKKLHDVFSSCG 275
Query: 164 EIDNVRLIRDQHTNIGKGFGYVNFK 188
EIDN+R ++D T G YVNFK
Sbjct: 276 EIDNIRCLQD-GTKGCSGVAYVNFK 299
>gi|302846041|ref|XP_002954558.1| hypothetical protein VOLCADRAFT_118759 [Volvox carteri f.
nagariensis]
gi|300260230|gb|EFJ44451.1| hypothetical protein VOLCADRAFT_118759 [Volvox carteri f.
nagariensis]
Length = 1010
Score = 77.8 bits (190), Expect = 4e-12, Method: Composition-based stats.
Identities = 59/210 (28%), Positives = 90/210 (42%), Gaps = 53/210 (25%)
Query: 54 VTSMFKPYGEVETVRFRSVPVA-DITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKA 112
V +F+ +G VE+VR R VPV D +PR+A I KV +R A+V FK E + A
Sbjct: 743 VRRLFEGFGAVESVRIRGVPVKMDANMPRRAAILSGKVDFERGPCTAFVVFKQPEVAQAA 802
Query: 113 LEMNGHVIDEHTIRVDKALTTTKSN----------------------------------- 137
L N +++ H IRVD A + +
Sbjct: 803 LGANMQLVEGHHIRVDLAAPRSAAAAAAAAAAAAVGSGKVKAKAAAAAAAAAAAAAAAAG 862
Query: 138 --------SHSIFIGNIPFEAEEEELRKAF--------ESCGEIDNVRLIRDQHTNIGKG 181
S S+F+GN+ F+ +EEL + E ++ VR++RD+ +GKG
Sbjct: 863 SSGGMYDPSRSVFVGNLHFQVTDEELIELVLGQAAMHPELTDAVEAVRVVRDRENTVGKG 922
Query: 182 FGYVNFKAEEEELRKAFESCGEIDNVRLIR 211
F +V K +E R A G++ R +R
Sbjct: 923 FAFVLLKTKEAA-RAALSLNGQLLRNRPLR 951
>gi|449704866|gb|EMD45026.1| RNA recognition motif domain containing protein [Entamoeba
histolytica KU27]
Length = 414
Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 85/164 (51%), Gaps = 5/164 (3%)
Query: 52 SSVTSMFKPYGEVETVRFRSVP-VADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVE 110
+ + K +G++E+ RFR + D + +K + R N Y + E E
Sbjct: 191 AQMKKFLKQFGKLESYRFRGGAFIQDEKSKKVHFLKKEYDTKVRKTQNCYAVYTTPEDAE 250
Query: 111 KAL-EMNGHVIDEHTIRVDKALTTTKSNS--HSIFIGNIPFEAEEEELRKAFESCGEIDN 167
KA E++G + +R D + K + +IF+GN+PF+ EEE+LRK F GEI+
Sbjct: 251 KAAKEIDGKEFLGYHLRADWEVNKGKKRNIRQTIFVGNLPFKMEEEQLRKLFSKAGEIER 310
Query: 168 VRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIR 211
V+++R+ + +G+G G+V F +E+++K GE R IR
Sbjct: 311 VKIVRESKSGMGRGIGFVTF-TNKEDVQKGLNMVGEKVKGRQIR 353
>gi|67477043|ref|XP_654040.1| RNA recognition motif domain containing protein [Entamoeba
histolytica HM-1:IMSS]
gi|56471058|gb|EAL48654.1| RNA recognition motif domain containing protein [Entamoeba
histolytica HM-1:IMSS]
Length = 414
Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 85/164 (51%), Gaps = 5/164 (3%)
Query: 52 SSVTSMFKPYGEVETVRFRSVP-VADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVE 110
+ + K +G++E+ RFR + D + +K + R N Y + E E
Sbjct: 191 AQMKKFLKQFGKLESYRFRGGAFIQDEKSKKVHFLKKEYDTKVRKTQNCYAVYTTPEDAE 250
Query: 111 KAL-EMNGHVIDEHTIRVDKALTTTKSNS--HSIFIGNIPFEAEEEELRKAFESCGEIDN 167
KA E++G + +R D + K + +IF+GN+PF+ EEE+LRK F GEI+
Sbjct: 251 KAAKEIDGKEFLGYHLRADWEVNKGKKRNIRQTIFVGNLPFKMEEEQLRKLFSKAGEIER 310
Query: 168 VRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIR 211
V+++R+ + +G+G G+V F +E+++K GE R IR
Sbjct: 311 VKIVRESKSGMGRGIGFVTF-TNKEDVQKGLNMVGEKVKGRQIR 353
>gi|156600447|gb|ABU86408.1| cleavage stimulation factor, partial [Clonorchis sinensis]
Length = 260
Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 43/109 (39%), Positives = 58/109 (53%), Gaps = 17/109 (15%)
Query: 96 NMNAYVRFKNLESVEKALEMNGHVI-------DEHT--------IRVDKALT--TTKSNS 138
NM AYV + + L +NGH + D T IRVD+AL +
Sbjct: 7 NMIAYVVLTSTAGIPAGLSLNGHWLQTKPISTDTPTDYQSSGKHIRVDRALRHRPVEQFK 66
Query: 139 HSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 187
S+F+GN+PF+ +EEE+R A G I NVRLIRD+ T KGFG+V +
Sbjct: 67 QSVFLGNLPFDVQEEEVRSAMSKFGPIANVRLIRDKETGAVKGFGFVQY 115
>gi|429860604|gb|ELA35334.1| nucleolar protein 12 [Colletotrichum gloeosporioides Nara gc5]
Length = 540
Score = 76.6 bits (187), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 88/171 (51%), Gaps = 19/171 (11%)
Query: 60 PYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRT-NMNAYVRFKNLESVEKAL-EMNG 117
P ++E++RFRSV + LP++A V ++ T + NAYV F + K + E+NG
Sbjct: 217 PAQKIESIRFRSVAFSGGALPKRAAYITKAVMQETTKSANAYVVFSTPAAARKVVAELNG 276
Query: 118 HVIDEHTIRVDK-ALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHT 176
V+ E +RVD A + + +F+GN+ F ++E + GE ++ + T
Sbjct: 277 TVVLERHLRVDSVAHPSPTDHRRCVFVGNLGFV--DDETITTVDEAGET-----VQRKRT 329
Query: 177 NIGKGFGYVNFKAEEEELRKAF-ESCGEIDNVRLIRDQHTNIGKGFGYVNF 226
+ EE L + F + G+++NVR+IRD T +GKGF YV F
Sbjct: 330 KVPADI--------EEGLWRTFGKQAGKVENVRVIRDPKTRVGKGFAYVQF 372
>gi|195483935|ref|XP_002090493.1| GE13151 [Drosophila yakuba]
gi|194176594|gb|EDW90205.1| GE13151 [Drosophila yakuba]
Length = 433
Score = 76.3 bits (186), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 48/147 (32%), Positives = 76/147 (51%), Gaps = 27/147 (18%)
Query: 57 MFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRT---NMNAYVRFKNLESVEKAL 113
+F+PYG V+++R R+ A K H++R ++NAYV +N E ++AL
Sbjct: 172 LFQPYGLVQSIRLRT-----------AGGKQLFKHKQRKVAGSLNAYVVLQNPEIAQQAL 220
Query: 114 EMNGHVIDEHTIRVDKAL------------TTTKSNSHSIFIGNIPFEAEEEELRKAFES 161
+NG E+ +RV A + K +IF+G++ + A EE+LR+ F S
Sbjct: 221 SLNGTEFKENHLRVTPAAKAEGFGQGADQQPSDKDAKRTIFVGSLKYSATEEQLREIFSS 280
Query: 162 CGEIDNVRLIRDQHTNIGKGFGYVNFK 188
CGEID +R ++D KG YV F+
Sbjct: 281 CGEIDYIRCLQDGDKGC-KGVAYVCFQ 306
>gi|195344626|ref|XP_002038882.1| GM17146 [Drosophila sechellia]
gi|194134012|gb|EDW55528.1| GM17146 [Drosophila sechellia]
Length = 436
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 48/147 (32%), Positives = 76/147 (51%), Gaps = 27/147 (18%)
Query: 57 MFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRT---NMNAYVRFKNLESVEKAL 113
+F+PYG V+++R R+ A K H++R ++NAYV +N E ++AL
Sbjct: 175 LFQPYGLVQSIRLRT-----------AGGKQLFKHKQRKVAGSLNAYVVLQNPEIAQQAL 223
Query: 114 EMNGHVIDEHTIRVDKA------------LTTTKSNSHSIFIGNIPFEAEEEELRKAFES 161
+NG E+ +RV A + K +IF+G++ + A EE+LR+ F S
Sbjct: 224 ALNGTEFKENHLRVTPASMAEKFGQGKDQQPSDKDAKRTIFVGSLKYSATEEQLREIFSS 283
Query: 162 CGEIDNVRLIRDQHTNIGKGFGYVNFK 188
CGEID +R ++D KG YV F+
Sbjct: 284 CGEIDYIRCLQDGDKGC-KGVAYVCFQ 309
>gi|195579698|ref|XP_002079698.1| GD21886 [Drosophila simulans]
gi|194191707|gb|EDX05283.1| GD21886 [Drosophila simulans]
Length = 436
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 48/147 (32%), Positives = 76/147 (51%), Gaps = 27/147 (18%)
Query: 57 MFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRT---NMNAYVRFKNLESVEKAL 113
+F+PYG V+++R R+ A K H++R ++NAYV +N E ++AL
Sbjct: 175 LFQPYGLVQSIRLRT-----------AGGKQLFKHKQRKVAGSLNAYVVLQNPEIAQQAL 223
Query: 114 EMNGHVIDEHTIRVDKA------------LTTTKSNSHSIFIGNIPFEAEEEELRKAFES 161
+NG E+ +RV A + K +IF+G++ + A EE+LR+ F S
Sbjct: 224 SLNGTEFKENHLRVTPASMAEKFSQGKDQQPSDKDAKRTIFVGSLKYSATEEQLREIFSS 283
Query: 162 CGEIDNVRLIRDQHTNIGKGFGYVNFK 188
CGEID +R ++D KG YV F+
Sbjct: 284 CGEIDYIRCLQDGDKGC-KGVAYVCFQ 309
>gi|195112762|ref|XP_002000941.1| GI10515 [Drosophila mojavensis]
gi|193917535|gb|EDW16402.1| GI10515 [Drosophila mojavensis]
Length = 433
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 75/150 (50%), Gaps = 26/150 (17%)
Query: 54 VTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRT--NMNAYVRFKNLESVEK 111
+ + KP+G V ++R R+ K+ K+ +++ ++NAYV N E +K
Sbjct: 173 IVRLLKPFGAVHSIRLRTA----------GGKKLFKLKQRKAAVSLNAYVVLDNPEIAQK 222
Query: 112 ALEMNGHVIDEHTIRVDKAL-------------TTTKSNSHSIFIGNIPFEAEEEELRKA 158
AL +NG E+ +RV A ++ ++FIGN+ + A EE+LR+
Sbjct: 223 ALALNGTQFKENHLRVTPAAKCGEVKDVGNGQASSEADVKRTVFIGNLKYSASEEKLREI 282
Query: 159 FESCGEIDNVRLIRDQHTNIGKGFGYVNFK 188
F SCGEID +R ++D KG YV F+
Sbjct: 283 FSSCGEIDYIRCLQDGEKGC-KGVAYVCFQ 311
>gi|260830184|ref|XP_002610041.1| hypothetical protein BRAFLDRAFT_129224 [Branchiostoma floridae]
gi|229295404|gb|EEN66051.1| hypothetical protein BRAFLDRAFT_129224 [Branchiostoma floridae]
Length = 542
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 64/106 (60%), Gaps = 6/106 (5%)
Query: 129 KALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRL--IRDQHTNIGKGF-GYV 185
K L + + ++F+GN+P ++EL+K F GEI++VR I D +I F G +
Sbjct: 339 KTLRDPERDQRTVFVGNLPVSTTKKELKKMFRKFGEIESVRFRSIFDHKLSI---FVGNL 395
Query: 186 NFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKVSFT 231
F E++ + + F CGE++ VR+IRD + +GKGFGYV F+ S +
Sbjct: 396 PFDVEDDSVYEHFSQCGEVEGVRIIRDSKSGLGKGFGYVLFQDSAS 441
>gi|290990600|ref|XP_002677924.1| NOP12_SCHPO nucleolar protein 12-like protein [Naegleria gruberi]
gi|284091534|gb|EFC45180.1| NOP12_SCHPO nucleolar protein 12-like protein [Naegleria gruberi]
Length = 377
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/154 (34%), Positives = 81/154 (52%), Gaps = 8/154 (5%)
Query: 54 VTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKAL 113
VT +F YGE+E++RFRS+ +P + + K YV F + + +
Sbjct: 187 VTKLFSVYGEIESIRFRSLGFEKSKIPTRKGHLAAGLRTKDYGT-VYVHFSEMTAEMSKI 245
Query: 114 --EMNGHVIDEHTIRVDKAL---TTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNV 168
++NG V+ + VD A T+ N SIFI N+PFE ++EE+ + S EI V
Sbjct: 246 ISDLNGKVLHGRHLNVDTASHKETSKDENDSSIFIQNLPFEIDDEEVWETIGSEHEIVRV 305
Query: 169 RLIRDQHTNIGKGFGYVNFKAEE--EELRKAFES 200
R++RD + KGFGYV K +E EE+ K+ +S
Sbjct: 306 RIVRDPISGKCKGFGYVQLKDKETVEEILKSIKS 339
>gi|302667361|ref|XP_003025267.1| RNA binding protein, putative [Trichophyton verrucosum HKI 0517]
gi|291189365|gb|EFE44656.1| RNA binding protein, putative [Trichophyton verrucosum HKI 0517]
Length = 551
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 84/171 (49%), Gaps = 22/171 (12%)
Query: 63 EVETVRFRSVPVADITLPRKACIKMNKVHEKRT-NMNAYVRFKNLESVEKALEMNGHVID 121
++E++RFRS + LPR+A ++ + T NAYV + + +KAL++NG ++
Sbjct: 242 KIESLRFRSTAFSSTALPRRAAYAKKELMDSTTKGTNAYVVYSTAVAAKKALKLNGTIVL 301
Query: 122 EHTIRVDKALTTTK-SNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGK 180
+ IRVD ++ +F+GN+ F EE + DQ + K
Sbjct: 302 DRHIRVDSVSKPAPVDHTRCVFVGNLGFVDEEAQ----------------PADQDGEVKK 345
Query: 181 GFGYVNFKAEEEELRKAF-ESCGE---IDNVRLIRDQHTNIGKGFGYVNFK 227
EE L + F + CG +++VR++RD+ T +GKGF YV FK
Sbjct: 346 KKKAAAAADVEEGLWRTFNDQCGGEGVVESVRVVRDRLTRVGKGFAYVQFK 396
>gi|258575621|ref|XP_002541992.1| predicted protein [Uncinocarpus reesii 1704]
gi|237902258|gb|EEP76659.1| predicted protein [Uncinocarpus reesii 1704]
Length = 565
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 82/167 (49%), Gaps = 20/167 (11%)
Query: 64 VETVRFRSVPVADITLPRKACIKMNKVHEKRT-NMNAYVRFKNLESVEKALEMNGHVIDE 122
+E++RFRS A +P++A ++ + T + NAYV + + KA+ +NG ++ E
Sbjct: 276 IESIRFRSTAFATAAVPKRAAFAKKELMDSTTQSTNAYVVYTTAAAARKAISLNGTIVLE 335
Query: 123 HTIRVDK-ALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKG 181
+RVD A N +F+GN+ F EE L + G+ + R
Sbjct: 336 RHLRVDSIAHPAPIDNKRCVFVGNLGFVDEETAL-----ADGDAEKKRKK---------- 380
Query: 182 FGYVNFKAEEEELRKAF-ESCGEIDNVRLIRDQHTNIGKGFGYVNFK 227
Y EE L + F + G +++VR++RD T +GKGF YV F+
Sbjct: 381 --YTPPADVEEGLWRTFNQHAGPVESVRVVRDPSTRVGKGFAYVQFR 425
>gi|452846765|gb|EME48697.1| hypothetical protein DOTSEDRAFT_141994 [Dothistroma septosporum
NZE10]
Length = 562
Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 84/166 (50%), Gaps = 18/166 (10%)
Query: 64 VETVRFRSVPVADITLPRKACIKMNKVHEKRT-NMNAYVRFKN-LESVEKALEMNGHVID 121
VE++RFRS P A +P+KA ++ + T + NAY + + + + E + +NG +
Sbjct: 254 VESIRFRSTPYAS-AIPKKAAFAKKELMDATTKSTNAYAVYSSPILAREASKRLNGTTVL 312
Query: 122 EHTIRVDKALTTTK-SNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGK 180
+ IRVD+ K N +F+GN+ F +E ++ A E G R GK
Sbjct: 313 DRHIRVDEVAHPAKVDNRRCVFVGNLGFVDDESNIQDANEEDGREKRKR---------GK 363
Query: 181 GFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 226
+ EE L + F CG++++VR+IRD T +GKG YV F
Sbjct: 364 EPADI-----EEGLWRTFGKCGKVESVRVIRDSTTRVGKGIAYVQF 404
>gi|392592716|gb|EIW82042.1| RNA-binding domain-containing protein [Coniophora puteana
RWD-64-598 SS2]
Length = 589
Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 63/121 (52%), Gaps = 17/121 (14%)
Query: 83 ACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKA------------ 130
A ++M++ R+ YV F E+VEKA+E+NG ID + VDK+
Sbjct: 362 ATVQMDR-STGRSRGFGYVHFSTSEAVEKAIELNGKEIDGRAVNVDKSNPPNKDASREKR 420
Query: 131 ----LTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVN 186
TT S ++F+GN+ F ++ L +AF GE+ NVRL D+ + KGFGYV
Sbjct: 421 AKTFGDTTSPPSATLFVGNLSFGMNDDALWEAFSEHGEVKNVRLPTDRESGRPKGFGYVE 480
Query: 187 F 187
F
Sbjct: 481 F 481
Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Query: 140 SIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
SIF+G + + + + L K F CGE+ + + D+ T +GFGYV+F + E + KA E
Sbjct: 334 SIFVGRLSWNVDNDWLAKEFAECGEVVSATVQMDRSTGRSRGFGYVHF-STSEAVEKAIE 392
Query: 200 SCG-EIDN 206
G EID
Sbjct: 393 LNGKEIDG 400
Score = 37.0 bits (84), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 27/47 (57%)
Query: 183 GYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKVS 229
G +++ + + L K F CGE+ + + D+ T +GFGYV+F S
Sbjct: 338 GRLSWNVDNDWLAKEFAECGEVVSATVQMDRSTGRSRGFGYVHFSTS 384
>gi|194880593|ref|XP_001974476.1| GG21761 [Drosophila erecta]
gi|190657663|gb|EDV54876.1| GG21761 [Drosophila erecta]
Length = 455
Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 76/151 (50%), Gaps = 27/151 (17%)
Query: 53 SVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRT---NMNAYVRFKNLESV 109
+ +F+PYG V+++R R+ A K H++R ++NAYV +N +
Sbjct: 190 QLVKLFQPYGLVQSIRLRT-----------AGGKQLFKHKQRKGAGSLNAYVVLQNPDIA 238
Query: 110 EKALEMNGHVIDEHTIRVDKALTT------------TKSNSHSIFIGNIPFEAEEEELRK 157
++AL MNG E+ +RV A K +IF+G++ + A EE+LR+
Sbjct: 239 KQALAMNGTEFKENHLRVTPAAKAEGFGQGKDEQPNDKDAKRTIFVGSLKYSANEEQLRE 298
Query: 158 AFESCGEIDNVRLIRDQHTNIGKGFGYVNFK 188
F SCGEID +R ++D KG YV F+
Sbjct: 299 IFSSCGEIDYIRCLQDGDKGC-KGVAYVCFQ 328
>gi|406859534|gb|EKD12598.1| nucleolar protein 12 [Marssonina brunnea f. sp. 'multigermtubi'
MB_m1]
Length = 593
Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 91/180 (50%), Gaps = 22/180 (12%)
Query: 51 LSSVTSMF-KPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRT-NMNAYVRFKNLES 108
LSS+ + KP ++E++RFRS A LP+KA + T + NAYV + +
Sbjct: 266 LSSLAPLAGKPEHKIESLRFRSTAYAGTALPKKAAFAKKDLMAATTKSTNAYVVYSTAFA 325
Query: 109 VEKALE-MNGHVIDEHTIRVDKALTTTKSN-SHSIFIGNIPFEAEEEELRKAFESCGEID 166
+A++ +NG ++ + +RVD K++ +F+GN+ F +E + E G D
Sbjct: 326 AREAVKKLNGTMVLDRHLRVDGVAHPAKTDHRRCVFVGNLGFVDDESMM----EQGG--D 379
Query: 167 NVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 226
N R ++I EE L + F G +++VR++RD+ T +GKGF YV F
Sbjct: 380 NERKRSKIPSDI------------EEGLWRQFGKVGTVESVRVVRDEKTRVGKGFAYVQF 427
>gi|389631593|ref|XP_003713449.1| nucleolar protein 12 [Magnaporthe oryzae 70-15]
gi|351645782|gb|EHA53642.1| nucleolar protein 12 [Magnaporthe oryzae 70-15]
Length = 551
Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 88/181 (48%), Gaps = 13/181 (7%)
Query: 49 HALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRT-NMNAYVRFKNLE 107
H S + KP +E++RFRSVPVA +P++A + V + T + NAYV + +
Sbjct: 212 HLASVLDKEAKPPQTIESLRFRSVPVATAAMPKRAAVITEAVMDATTKSANAYVVYSDAA 271
Query: 108 SVEKAL-EMNGHVIDEHTIRVDK-ALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEI 165
A+ ++NG ++ + +R D A + +F+GN+ F +E + + G+
Sbjct: 272 GARAAVTKLNGTMVLDRHLRTDSVAHPAPVDHRRCVFVGNLGFVDDETVVNVTVDEDGKQ 331
Query: 166 DNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVN 225
+ R + V EE R +S G+++NVR++RD T +GKG YV
Sbjct: 332 KEEKRKRTK----------VPMDVEEGLWRTFGKSAGKVENVRVVRDGVTRVGKGIAYVQ 381
Query: 226 F 226
F
Sbjct: 382 F 382
>gi|440463708|gb|ELQ33262.1| nucleolar protein 12 [Magnaporthe oryzae Y34]
gi|440483702|gb|ELQ64051.1| nucleolar protein 12 [Magnaporthe oryzae P131]
Length = 551
Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 88/181 (48%), Gaps = 13/181 (7%)
Query: 49 HALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRT-NMNAYVRFKNLE 107
H S + KP +E++RFRSVPVA +P++A + V + T + NAYV + +
Sbjct: 212 HLASVLDKEAKPPQTIESLRFRSVPVATAAMPKRAAVITEAVMDATTKSANAYVVYSDAA 271
Query: 108 SVEKAL-EMNGHVIDEHTIRVDK-ALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEI 165
A+ ++NG ++ + +R D A + +F+GN+ F +E + + G+
Sbjct: 272 GARAAVTKLNGTMVLDRHLRTDSVAHPAPVDHRRCVFVGNLGFVDDETVVNVTVDEDGKQ 331
Query: 166 DNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVN 225
+ R + V EE R +S G+++NVR++RD T +GKG YV
Sbjct: 332 KEEKRKRTK----------VPMDVEEGLWRTFGKSAGKVENVRVVRDGVTRVGKGIAYVQ 381
Query: 226 F 226
F
Sbjct: 382 F 382
>gi|303321530|ref|XP_003070759.1| RNA recognition motif containing protein [Coccidioides posadasii
C735 delta SOWgp]
gi|240110456|gb|EER28614.1| RNA recognition motif containing protein [Coccidioides posadasii
C735 delta SOWgp]
Length = 557
Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 99/211 (46%), Gaps = 33/211 (15%)
Query: 26 VFL-NIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGE------VETVRFRSVPVADIT 78
VFL N+ A+K K SK L+ ++S F E +E++RFRS A
Sbjct: 231 VFLGNVSSEAIKSKS------SKKALLAHLSSFFPSLPESSTPHKIESIRFRSTAFATAA 284
Query: 79 LPRKACIKMNKVHEKRT-NMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDK-ALTTTKS 136
+P++A + + T + NAYV + + KAL +NG + + +RVD A
Sbjct: 285 VPKRAAFAKKDLMDSTTRSTNAYVVYTTAAAARKALSLNGTTVLDRHLRVDSIAHPAPID 344
Query: 137 NSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRK 196
+ +F+GN+ F EE A S + + R +++ EE L +
Sbjct: 345 HKRCVFVGNLGFVDEE-----AAASTDDQEKKRKKSATPSDV------------EEGLWR 387
Query: 197 AF-ESCGEIDNVRLIRDQHTNIGKGFGYVNF 226
F E+ G +++VR++RD T +GKGF Y+ F
Sbjct: 388 TFNENAGRVESVRVVRDPSTRVGKGFAYIQF 418
>gi|119195671|ref|XP_001248439.1| hypothetical protein CIMG_02210 [Coccidioides immitis RS]
gi|392862354|gb|EAS37006.2| nucleolar protein 12 [Coccidioides immitis RS]
Length = 556
Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 65/212 (30%), Positives = 101/212 (47%), Gaps = 35/212 (16%)
Query: 26 VFL-NIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGE------VETVRFRSVPVADIT 78
VFL N+ A+K K SK L+ ++S F E +E++RFRS A
Sbjct: 229 VFLGNVSSEAIKSKS------SKKALLAHLSSFFPSLPESSTPHKIESIRFRSTAFATAA 282
Query: 79 LPRKACIKMNKVHEKRT-NMNAYVRFKNLESVEKALEMNGH-VIDEHTIRVDK-ALTTTK 135
+P++A + + T + NAYV + + KAL +NG V+D H +RVD A
Sbjct: 283 VPKRAAFAKKDLMDSTTRSTNAYVVYTTAAAARKALSLNGTTVLDRH-LRVDSIAHPAPI 341
Query: 136 SNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELR 195
+ +F+GN+ F EE A S + + R +++ EE L
Sbjct: 342 DHKRCVFVGNLGFVDEE-----AAASTDDQEKKRKKSATPSDV------------EEGLW 384
Query: 196 KAF-ESCGEIDNVRLIRDQHTNIGKGFGYVNF 226
+ F E+ G +++VR++RD T +GKGF YV F
Sbjct: 385 RTFNENAGRVESVRVVRDPSTRVGKGFAYVQF 416
>gi|154308958|ref|XP_001553814.1| hypothetical protein BC1G_08007 [Botryotinia fuckeliana B05.10]
gi|347838569|emb|CCD53141.1| hypothetical protein [Botryotinia fuckeliana]
Length = 614
Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 87/171 (50%), Gaps = 21/171 (12%)
Query: 59 KPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRT-NMNAYVRFKNLESVEKALE-MN 116
KP ++E++RFRS A LP+KA + T + NAY + + +A++ +N
Sbjct: 295 KPSHKLESLRFRSTAYATAALPKKAAFAKKDIMTATTKSTNAYAVYSTAFAAREAVKKLN 354
Query: 117 GHVIDEHTIRVDKALTTTKSN-SHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQH 175
G ++ + +RVD K++ +F+GN+ F ++E L E GE N R
Sbjct: 355 GTIVLDRHLRVDGVAHPAKTDHRRCVFVGNLGF-VDDESL---LEQDGE--NSRKRSKIP 408
Query: 176 TNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 226
++I EE L + F GE+++VR+IRD+ T +GKGF YV F
Sbjct: 409 SDI------------EEGLWRQFGKAGEVESVRVIRDEKTRVGKGFAYVQF 447
>gi|401407368|ref|XP_003883133.1| hypothetical protein NCLIV_028890 [Neospora caninum Liverpool]
gi|325117549|emb|CBZ53101.1| hypothetical protein NCLIV_028890 [Neospora caninum Liverpool]
Length = 687
Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 69/132 (52%), Gaps = 7/132 (5%)
Query: 63 EVETVRFRSVPV-ADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVID 121
+VE++R RS+PV R I + + + NAY+ K+ + V L+ +G
Sbjct: 477 DVESIRLRSIPVHPKFNKCRLGGIVQGQFTDLKDFQNAYIVLKDRKLVRAVLQHDGSTFQ 536
Query: 122 EHTIRVDKALTTTK------SNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQH 175
+ +RVD+A + ++F+GN+P EE+LRKA E G + VR+IRD+
Sbjct: 537 DRRLRVDEAGERGQNVFSRFDRKKTVFVGNLPARCSEEDLRKALECNGAVKAVRIIRDKV 596
Query: 176 TNIGKGFGYVNF 187
T KGFG+V F
Sbjct: 597 TTESKGFGFVCF 608
>gi|24584762|ref|NP_609822.1| CG12288 [Drosophila melanogaster]
gi|7298360|gb|AAF53587.1| CG12288 [Drosophila melanogaster]
Length = 435
Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 75/147 (51%), Gaps = 27/147 (18%)
Query: 57 MFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRT---NMNAYVRFKNLESVEKAL 113
+F+PYG V+++R R+ A K H++R ++NAYV + E ++AL
Sbjct: 174 LFQPYGLVQSIRLRT-----------AGGKQLFKHKQRKVAGSLNAYVVLEKPEIAQQAL 222
Query: 114 EMNGHVIDEHTIRVDKA------------LTTTKSNSHSIFIGNIPFEAEEEELRKAFES 161
+NG E+ +RV A + K +IF+G++ + A EE+LR+ F S
Sbjct: 223 ALNGSEFKENHLRVTPASMAEKFGQAKDKQPSDKDAKRTIFVGSLKYSATEEQLREIFSS 282
Query: 162 CGEIDNVRLIRDQHTNIGKGFGYVNFK 188
CGEID +R ++D KG YV F+
Sbjct: 283 CGEIDYIRCLQDGDKGC-KGVAYVCFQ 308
>gi|21430048|gb|AAM50702.1| GM13065p [Drosophila melanogaster]
Length = 435
Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 75/147 (51%), Gaps = 27/147 (18%)
Query: 57 MFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRT---NMNAYVRFKNLESVEKAL 113
+F+PYG V+++R R+ A K H++R ++NAYV + E ++AL
Sbjct: 174 LFQPYGLVQSIRLRT-----------AGGKQLFKHKQRKVAGSLNAYVVLEKPEIAQQAL 222
Query: 114 EMNGHVIDEHTIRVDKA------------LTTTKSNSHSIFIGNIPFEAEEEELRKAFES 161
+NG E+ +RV A + K +IF+G++ + A EE+LR+ F S
Sbjct: 223 ALNGSEFKENHLRVTPASMAEKFGQAKDQQPSDKDAKRTIFVGSLKYSATEEQLREIFSS 282
Query: 162 CGEIDNVRLIRDQHTNIGKGFGYVNFK 188
CGEID +R ++D KG YV F+
Sbjct: 283 CGEIDYIRCLQDGDKGC-KGVAYVCFQ 308
>gi|167377342|ref|XP_001734363.1| nucleolar protein [Entamoeba dispar SAW760]
gi|165904154|gb|EDR29480.1| nucleolar protein, putative [Entamoeba dispar SAW760]
Length = 422
Score = 73.2 bits (178), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 51/164 (31%), Positives = 85/164 (51%), Gaps = 5/164 (3%)
Query: 52 SSVTSMFKPYGEVETVRFRSVP-VADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVE 110
+ + K +G++E+ RFR + D + +K + R N Y + E E
Sbjct: 199 AQMKKFLKQFGKLESYRFRGGAFIQDEKSKKVHFLKKEYDTKVRKTQNCYAVYSTPEEAE 258
Query: 111 KAL-EMNGHVIDEHTIRVDKALTTT-KSN-SHSIFIGNIPFEAEEEELRKAFESCGEIDN 167
KA E+NG + +R D + K N +IF+GN+PF+ EEE+LR F GEI++
Sbjct: 259 KAAKEINGKEFLGYHLRADWEVNKGMKRNIRKTIFVGNLPFKMEEEQLRHFFSKVGEIES 318
Query: 168 VRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIR 211
V+++R+ + +G+G G+V F +E+++K GE R IR
Sbjct: 319 VKIVRESKSGMGRGIGFVTF-TNKEDVQKGLNMVGEKIKGRQIR 361
>gi|320040233|gb|EFW22166.1| conserved hypothetical protein [Coccidioides posadasii str.
Silveira]
Length = 465
Score = 73.2 bits (178), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 99/211 (46%), Gaps = 33/211 (15%)
Query: 26 VFL-NIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGE------VETVRFRSVPVADIT 78
VFL N+ A+K K SK L+ ++S F E +E++RFRS A
Sbjct: 231 VFLGNVSSEAIKSKS------SKKALLAHLSSFFPSLPESSTPHKIESIRFRSTAFATAA 284
Query: 79 LPRKACIKMNKVHEKRT-NMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDK-ALTTTKS 136
+P++A + + T + NAYV + + KAL +NG + + +RVD A
Sbjct: 285 VPKRAAFAKKDLMDSTTRSTNAYVVYTTAAAARKALSLNGTTVLDRHLRVDSIAHPAPID 344
Query: 137 NSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRK 196
+ +F+GN+ F EE A S + + R +++ EE L +
Sbjct: 345 HKRCVFVGNLGFVDEE-----AAASTDDQEKKRKKSATPSDV------------EEGLWR 387
Query: 197 AF-ESCGEIDNVRLIRDQHTNIGKGFGYVNF 226
F E+ G +++VR++RD T +GKGF Y+ F
Sbjct: 388 TFNENAGRVESVRVVRDPSTRVGKGFAYIQF 418
>gi|340897413|gb|EGS17003.1| hypothetical protein CTHT_0073280 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 623
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 91/182 (50%), Gaps = 16/182 (8%)
Query: 49 HALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRT-NMNAYVRFKNLE 107
H S + P ++E++RFRS P +PR+ ++ E T + NAYV +
Sbjct: 261 HLASPLDKKADPPQKIESIRFRSTPFGTTKIPRRVAYIKKEIMEGTTKSTNAYVVYSTAA 320
Query: 108 SVEKALE-MNGHVIDEHTIRVDK-ALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEI 165
+ A++ +NG ++ + +R D A N +F+GN+ F +E R ++
Sbjct: 321 AARLAVQHLNGTIVLDRHLRADSVAHPAPIDNRRCVFVGNLGFVDDESVYRT------KV 374
Query: 166 DNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAF-ESCGEIDNVRLIRDQHTNIGKGFGYV 224
++ +L+ ++ GK V EE L + F E G++++VR++RD T +GKGF YV
Sbjct: 375 EDGKLVTEKKKK-GKEPSDV-----EEGLWRVFGEHAGKVESVRVVRDPATRVGKGFAYV 428
Query: 225 NF 226
F
Sbjct: 429 QF 430
>gi|449297210|gb|EMC93228.1| hypothetical protein BAUCODRAFT_46871, partial [Baudoinia
compniacensis UAMH 10762]
Length = 479
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 85/171 (49%), Gaps = 18/171 (10%)
Query: 60 PYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRT-NMNAYVRFKNLE-SVEKALEMNG 117
P ++E++RFRS P A ++PRKA + + T + NAY + + E A +NG
Sbjct: 183 PAPKLESLRFRSTPYA-TSIPRKAAFARKDLMDATTKSTNAYAVYSSPHLCREAAKRLNG 241
Query: 118 HVIDEHTIRVDK-ALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHT 176
+I + +RVD A + +F+GN+ F +E ++ A E+ G R
Sbjct: 242 SIILDRHLRVDVVAHPAPTDHRRCVFVGNLGFVDDESNIQDANEADGYEKRKR------- 294
Query: 177 NIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK 227
GK V EE L + F CG +++VR+IRD T +GKG YV F+
Sbjct: 295 --GKEPADV-----EEGLWRTFSKCGTVESVRVIRDSTTRVGKGVAYVQFE 338
>gi|417409049|gb|JAA51051.1| Putative rna-binding protein musashi/mrna cleavage and
polyadenylation factor i complex subunit hrp1, partial
[Desmodus rotundus]
Length = 252
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/115 (37%), Positives = 64/115 (55%), Gaps = 1/115 (0%)
Query: 85 IKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKSNSHSIFIG 144
IKM+ + R+ ++ FK+ SVEK L+ H +D I KA+ K IF+G
Sbjct: 68 IKMDP-NTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKKAMAMKKEPVKKIFVG 126
Query: 145 NIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
+ EA EEE+R+ F GEI+ + L D ++ +GF ++ FK EEE +RKA E
Sbjct: 127 GLNPEATEEEIREYFGEFGEIEAIDLPMDPKSHKRRGFVFITFKEEEEPVRKALE 181
Score = 40.0 bits (92), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 29/141 (20%), Positives = 57/141 (40%), Gaps = 45/141 (31%)
Query: 132 TTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK--- 188
+ T+ ++ +F+G + ++ + +L+ F GE+ + + D +T +GFG++ FK
Sbjct: 30 SRTEDDAGKMFVGGLSWDTSKNDLKDYFSKFGEVVDCTIKMDPNTGRSRGFGFILFKDAA 89
Query: 189 ------------------------------------------AEEEELRKAFESCGEIDN 206
A EEE+R+ F GEI+
Sbjct: 90 SVEKVLDQKEHRLDGRVIDPKKAMAMKKEPVKKIFVGGLNPEATEEEIREYFGEFGEIEA 149
Query: 207 VRLIRDQHTNIGKGFGYVNFK 227
+ L D ++ +GF ++ FK
Sbjct: 150 IDLPMDPKSHKRRGFVFITFK 170
>gi|198452886|ref|XP_002137558.1| GA27287 [Drosophila pseudoobscura pseudoobscura]
gi|198132120|gb|EDY68116.1| GA27287 [Drosophila pseudoobscura pseudoobscura]
Length = 429
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 74/144 (51%), Gaps = 24/144 (16%)
Query: 57 MFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRT---NMNAYVRFKNLESVEKAL 113
+ KPYG V+++R R+ A K H++R ++NAYV + E E+AL
Sbjct: 171 LLKPYGNVKSIRLRT-----------AGGKQLFKHKQRKGAGSLNAYVVLDSAEIAERAL 219
Query: 114 EMNGHVIDEHTIRVDKALTTTKSNS---------HSIFIGNIPFEAEEEELRKAFESCGE 164
+NG E+ +RV A + + +IF+G++ + A EE+LR+ F SCGE
Sbjct: 220 ALNGTEFKENHLRVTPAAKSESGDDKGPKDADAKRTIFVGSLKYSATEEKLREIFSSCGE 279
Query: 165 IDNVRLIRDQHTNIGKGFGYVNFK 188
I+ +R +++ KG YV FK
Sbjct: 280 IEYIRCLQEGEKGC-KGVAYVCFK 302
>gi|169623947|ref|XP_001805380.1| hypothetical protein SNOG_15221 [Phaeosphaeria nodorum SN15]
gi|160705083|gb|EAT77446.2| hypothetical protein SNOG_15221 [Phaeosphaeria nodorum SN15]
Length = 504
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 77/150 (51%), Gaps = 22/150 (14%)
Query: 60 PYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRT-NMNAYVRFKNLESVEKALE-MNG 117
P +VE++R+RS+ ++ P++A ++ + T + NAY + + +A++ +NG
Sbjct: 225 PPHKVESIRYRSIRLSITACPKRAAFAKKEIKDSTTRSTNAYAVYTTTTAAREAVKRLNG 284
Query: 118 HVIDEHTIRVDKALTTTK-SNSHSIFIGNIPF----------EAE---------EEELRK 157
V + + VD TK + +F+GN+PF E E EE L
Sbjct: 285 SVFLKRHMHVDSVAHPTKIDHRRCVFVGNLPFVDDRSQVPTAEGEVKKKPSSDVEEGLWT 344
Query: 158 AFESCGEIDNVRLIRDQHTNIGKGFGYVNF 187
F S G+I++VR++RD T +GKGF YV F
Sbjct: 345 HFASAGKIESVRVVRDAATRVGKGFAYVQF 374
>gi|195144442|ref|XP_002013205.1| GL23520 [Drosophila persimilis]
gi|194102148|gb|EDW24191.1| GL23520 [Drosophila persimilis]
Length = 434
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 74/144 (51%), Gaps = 24/144 (16%)
Query: 57 MFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRT---NMNAYVRFKNLESVEKAL 113
+ KPYG V+++R R+ A K H++R ++NAYV + E E+AL
Sbjct: 176 LLKPYGNVKSIRLRT-----------AGGKQLFKHKQRKGAGSLNAYVVLDSAEIAERAL 224
Query: 114 EMNGHVIDEHTIRVDKALTTTKSNS---------HSIFIGNIPFEAEEEELRKAFESCGE 164
+NG E+ +RV A + + +IF+G++ + A EE+LR+ F SCGE
Sbjct: 225 ALNGTEFKENHLRVTPAAKSESGDDKGPKDADAKRTIFVGSLKYSATEEKLREIFSSCGE 284
Query: 165 IDNVRLIRDQHTNIGKGFGYVNFK 188
I+ +R +++ KG YV FK
Sbjct: 285 IEYIRCLQEGEKGC-KGVAYVCFK 307
>gi|409049565|gb|EKM59042.1| hypothetical protein PHACADRAFT_169505 [Phanerochaete carnosa
HHB-10118-sp]
Length = 578
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/130 (33%), Positives = 69/130 (53%), Gaps = 18/130 (13%)
Query: 99 AYVRFKNLESVEKALEMNGHVIDEHTIRVDKAL----------------TTTKSNSHSIF 142
+V F + E+V+KALE+NG ID I +DK++ T + S +F
Sbjct: 353 GFVTFASPEAVDKALELNGKEIDGRPINIDKSVEKDQNQVRERRAKAFGDATSAPSSVLF 412
Query: 143 IGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFES-C 201
+GN+ F+A E++L + F G + +VR+ D+ + KGFGYV F+ + E +KA E
Sbjct: 413 VGNLSFDATEDQLWEVFSDYGSVKSVRMPTDRESGRPKGFGYVEFE-DVESAKKAHEGLA 471
Query: 202 GEIDNVRLIR 211
G+ R +R
Sbjct: 472 GQEIAGRAVR 481
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 48/83 (57%), Gaps = 3/83 (3%)
Query: 125 IRVDKALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGY 184
++VD+A + S + +IF+G + + + + L F CGE+ + R+ D++T +GFG+
Sbjct: 296 VKVDEAADDSAS-TKTIFVGKLSWNVDNDWLESEFAECGEVVSARVQMDRNTGKSRGFGF 354
Query: 185 VNFKAEEEELRKAFESCG-EIDN 206
V F A E + KA E G EID
Sbjct: 355 VTF-ASPEAVDKALELNGKEIDG 376
>gi|417409403|gb|JAA51208.1| Putative rna-binding protein musashi/mrna cleavage and
polyadenylation factor i complex subunit hrp1, partial
[Desmodus rotundus]
Length = 292
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/115 (37%), Positives = 64/115 (55%), Gaps = 1/115 (0%)
Query: 85 IKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKSNSHSIFIG 144
IKM+ + R+ ++ FK+ SVEK L+ H +D I KA+ K IF+G
Sbjct: 61 IKMDP-NTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKKAMAMKKEPVKKIFVG 119
Query: 145 NIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
+ EA EEE+R+ F GEI+ + L D ++ +GF ++ FK EEE +RKA E
Sbjct: 120 GLNPEATEEEIREYFGEFGEIEAIDLPMDPKSHKRRGFVFITFKEEEEPVRKALE 174
Score = 38.9 bits (89), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 29/141 (20%), Positives = 57/141 (40%), Gaps = 45/141 (31%)
Query: 132 TTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK--- 188
+ T+ ++ +F+G + ++ + +L+ F GE+ + + D +T +GFG++ FK
Sbjct: 23 SRTEDDAGKMFVGGLSWDTSKNDLKDYFSKFGEVVDCTIKMDPNTGRSRGFGFILFKDAA 82
Query: 189 ------------------------------------------AEEEELRKAFESCGEIDN 206
A EEE+R+ F GEI+
Sbjct: 83 SVEKVLDQKEHRLDGRVIDPKKAMAMKKEPVKKIFVGGLNPEATEEEIREYFGEFGEIEA 142
Query: 207 VRLIRDQHTNIGKGFGYVNFK 227
+ L D ++ +GF ++ FK
Sbjct: 143 IDLPMDPKSHKRRGFVFITFK 163
>gi|221484519|gb|EEE22813.1| RNA binding motif-containing protein, putative [Toxoplasma gondii
GT1]
Length = 802
Score = 72.0 bits (175), Expect = 2e-10, Method: Composition-based stats.
Identities = 45/149 (30%), Positives = 73/149 (48%), Gaps = 7/149 (4%)
Query: 63 EVETVRFRSVPV-ADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVID 121
+VE++R RS+PV R + + + + NAY+ K+ L+ +G
Sbjct: 583 DVESIRLRSIPVHPKFNKCRLGGLVKGQFTDLKDFQNAYIVLKDRRLFRSILQHDGTSFQ 642
Query: 122 EHTIRVDKA------LTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQH 175
+RVD+A + + ++F+GN+P EE+LR+A ES G + VR+IRD+
Sbjct: 643 GRRLRVDEAGERGRNVFSRFDRKKTVFVGNLPSRCSEEDLRRALESNGTVKAVRIIRDKV 702
Query: 176 TNIGKGFGYVNFKAEEEELRKAFESCGEI 204
T KGFG+V F+ R S G +
Sbjct: 703 TTESKGFGFVCFEDRVSAARAVLASNGVV 731
>gi|237839677|ref|XP_002369136.1| RNA binding motif-containing protein [Toxoplasma gondii ME49]
gi|211966800|gb|EEB01996.1| RNA binding motif-containing protein [Toxoplasma gondii ME49]
Length = 802
Score = 72.0 bits (175), Expect = 2e-10, Method: Composition-based stats.
Identities = 45/149 (30%), Positives = 73/149 (48%), Gaps = 7/149 (4%)
Query: 63 EVETVRFRSVPV-ADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVID 121
+VE++R RS+PV R + + + + NAY+ K+ L+ +G
Sbjct: 583 DVESIRLRSIPVHPKFNKCRLGGLVKGQFTDLKDFQNAYIVLKDRRLFRSILQHDGTSFQ 642
Query: 122 EHTIRVDKA------LTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQH 175
+RVD+A + + ++F+GN+P EE+LR+A ES G + VR+IRD+
Sbjct: 643 GRRLRVDEAGERGRNVFSRFDRKKTVFVGNLPSRCSEEDLRRALESNGTVKAVRIIRDKV 702
Query: 176 TNIGKGFGYVNFKAEEEELRKAFESCGEI 204
T KGFG+V F+ R S G +
Sbjct: 703 TTESKGFGFVCFEDRVSAARAVLASNGVV 731
>gi|221504716|gb|EEE30381.1| RNA binding motif-containing protein, putative [Toxoplasma gondii
VEG]
Length = 802
Score = 72.0 bits (175), Expect = 2e-10, Method: Composition-based stats.
Identities = 45/149 (30%), Positives = 73/149 (48%), Gaps = 7/149 (4%)
Query: 63 EVETVRFRSVPV-ADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVID 121
+VE++R RS+PV R + + + + NAY+ K+ L+ +G
Sbjct: 583 DVESIRLRSIPVHPKFNKCRLGGLVKGQFTDLKDFQNAYIVLKDRRLFRSILQHDGTSFQ 642
Query: 122 EHTIRVDKA------LTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQH 175
+RVD+A + + ++F+GN+P EE+LR+A ES G + VR+IRD+
Sbjct: 643 GRRLRVDEAGERGRNVFSRFDRKKTVFVGNLPSRCSEEDLRRALESNGTVKAVRIIRDKV 702
Query: 176 TNIGKGFGYVNFKAEEEELRKAFESCGEI 204
T KGFG+V F+ R S G +
Sbjct: 703 TTESKGFGFVCFEDRVSAARAVLASNGVV 731
>gi|358391644|gb|EHK41048.1| hypothetical protein TRIATDRAFT_130480 [Trichoderma atroviride IMI
206040]
Length = 546
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 56/182 (30%), Positives = 91/182 (50%), Gaps = 20/182 (10%)
Query: 49 HALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRT-NMNAYVRFKNLE 107
H S + P ++E++RFRSV + ++P++A + + T + NAY F +
Sbjct: 221 HLASVLDKDASPPQKIESLRFRSVAFSAGSMPKRAAYITKALMDATTKSTNAYAVFSDPA 280
Query: 108 SVEKAL-EMNGHVIDEHTIRVDKALTTTKSNSHS-IFIGNIPFEAEEEELRKAFESCGEI 165
+ K + E+NG I IRVD + N S +F+GN+ F +E L + +
Sbjct: 281 AARKVVAELNGTEILGRHIRVDSVAHPSPMNHRSCVFVGNLGFVDDETVLNRQADG---- 336
Query: 166 DNVRLIRDQ-HTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYV 224
D V R++ ++I EE L + F + G+++NVR+IRD T +GKGF YV
Sbjct: 337 DTVEKKRNKVPSDI------------EEGLWRTFGTKGKVENVRVIRDSKTRVGKGFAYV 384
Query: 225 NF 226
F
Sbjct: 385 QF 386
>gi|170091988|ref|XP_001877216.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164648709|gb|EDR12952.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 218
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 72/143 (50%), Gaps = 19/143 (13%)
Query: 75 ADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTT 134
AD A ++M++ K YV F ++VEKAL+MNG ID I+VD++L
Sbjct: 20 ADCGEIESATVQMDRNTGKSRGF-GYVHFTTPDAVEKALQMNGQEIDGRAIKVDRSLPRD 78
Query: 135 KSN----------------SHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNI 178
KS S ++F+GN+ F E+ + F G + +VRL D+ T
Sbjct: 79 KSQVREKRAQAFGDEVSAPSSTLFVGNLSFGVTEDTVWSFFNDYG-VKSVRLPTDRETGR 137
Query: 179 GKGFGYVNFKAEEEELRKAFESC 201
KGFGYV F+ + + +KAFE+
Sbjct: 138 PKGFGYVEFE-DIDGAKKAFEAA 159
Score = 44.3 bits (103), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 141 IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFES 200
+F+G + + + + L + F CGEI++ + D++T +GFGYV+F + + KA +
Sbjct: 1 VFVGQLSWAVDNDRLAQEFADCGEIESATVQMDRNTGKSRGFGYVHFTT-PDAVEKALQM 59
Query: 201 CGEIDNVRLIR 211
G+ + R I+
Sbjct: 60 NGQEIDGRAIK 70
Score = 38.1 bits (87), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 28/44 (63%)
Query: 183 GYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 226
G +++ + + L + F CGEI++ + D++T +GFGYV+F
Sbjct: 4 GQLSWAVDNDRLAQEFADCGEIESATVQMDRNTGKSRGFGYVHF 47
>gi|195331490|ref|XP_002032434.1| GM23518 [Drosophila sechellia]
gi|194121377|gb|EDW43420.1| GM23518 [Drosophila sechellia]
Length = 464
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/141 (34%), Positives = 73/141 (51%), Gaps = 14/141 (9%)
Query: 80 PRKACIKMNKVHEKRTNMNAYVRFKNLESVEKAL-EMNGHVIDEHTIRVDKALT------ 132
P K+C + E + A++ + N ++ AL MN + E I+V+ A +
Sbjct: 32 PVKSC---KIIREPGNDPYAFIEYSNYQAASTALTAMNKRLFLEKEIKVNWATSPGNQPK 88
Query: 133 TTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF--KAE 190
T S+ H IF+G++ E E E LR+AF GEI N R++RD HT KG+ +V+F KAE
Sbjct: 89 TDISSHHHIFVGDLSPEIETETLREAFAPFGEISNCRIVRDPHTMKSKGYAFVSFVKKAE 148
Query: 191 EEELRKAFESCGEIDNVRLIR 211
E +A G+ R IR
Sbjct: 149 AENAIQAMN--GQWIGSRSIR 167
>gi|17944383|gb|AAL48083.1| RE71384p [Drosophila melanogaster]
Length = 470
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/141 (34%), Positives = 73/141 (51%), Gaps = 14/141 (9%)
Query: 80 PRKACIKMNKVHEKRTNMNAYVRFKNLESVEKAL-EMNGHVIDEHTIRVDKALT------ 132
P K+C + E + A++ + N ++ AL MN + E I+V+ A +
Sbjct: 32 PVKSC---KIIREPGNDPYAFIEYSNYQAATTALTAMNKRLFLEKEIKVNWATSPGNQPK 88
Query: 133 TTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF--KAE 190
T S+ H IF+G++ E E E LR+AF GEI N R++RD HT KG+ +V+F KAE
Sbjct: 89 TDISSHHHIFVGDLSPEIETETLREAFAPFGEISNCRIVRDPHTMKSKGYAFVSFVKKAE 148
Query: 191 EEELRKAFESCGEIDNVRLIR 211
E +A G+ R IR
Sbjct: 149 AENAIQAMN--GQWIGSRSIR 167
>gi|24649513|ref|NP_732942.1| Rox8, isoform B [Drosophila melanogaster]
gi|24649515|ref|NP_732943.1| Rox8, isoform C [Drosophila melanogaster]
gi|7301090|gb|AAF56224.1| Rox8, isoform C [Drosophila melanogaster]
gi|7301091|gb|AAF56225.1| Rox8, isoform B [Drosophila melanogaster]
Length = 464
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/141 (34%), Positives = 73/141 (51%), Gaps = 14/141 (9%)
Query: 80 PRKACIKMNKVHEKRTNMNAYVRFKNLESVEKAL-EMNGHVIDEHTIRVDKALT------ 132
P K+C + E + A++ + N ++ AL MN + E I+V+ A +
Sbjct: 32 PVKSC---KIIREPGNDPYAFIEYSNYQAATTALTAMNKRLFLEKEIKVNWATSPGNQPK 88
Query: 133 TTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF--KAE 190
T S+ H IF+G++ E E E LR+AF GEI N R++RD HT KG+ +V+F KAE
Sbjct: 89 TDISSHHHIFVGDLSPEIETETLREAFAPFGEISNCRIVRDPHTMKSKGYAFVSFVKKAE 148
Query: 191 EEELRKAFESCGEIDNVRLIR 211
E +A G+ R IR
Sbjct: 149 AENAIQAMN--GQWIGSRSIR 167
>gi|330906317|ref|XP_003295431.1| hypothetical protein PTT_00922 [Pyrenophora teres f. teres 0-1]
gi|311333292|gb|EFQ96474.1| hypothetical protein PTT_00922 [Pyrenophora teres f. teres 0-1]
Length = 561
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 76/152 (50%), Gaps = 25/152 (16%)
Query: 60 PYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRT-NMNAYVRFKNLESVEKALE-MNG 117
P ++E++RFRS +LP++A ++ E T + NAY + + +A++ +NG
Sbjct: 275 PPHKIESIRFRSTAFGS-SLPKRAAFAKKEIMEATTKSTNAYAVYTTKVAAREAVKRLNG 333
Query: 118 HVIDEHTIRVDKALTTTK-SNSHSIFIGNIPF----------EAE-----------EEEL 155
V+ + VD TK + +F+GN+PF E E EE L
Sbjct: 334 SVLLNRHLHVDSVAHPTKVDHRRCVFVGNLPFVDDESQTPTVEGEKPKSKKPASDIEEGL 393
Query: 156 RKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 187
F CG++++VR++RD T +GKGF YV F
Sbjct: 394 WLQFAKCGKVESVRVVRDAKTRVGKGFAYVQF 425
>gi|24649519|ref|NP_732945.1| Rox8, isoform D [Drosophila melanogaster]
gi|442620772|ref|NP_732944.2| Rox8, isoform E [Drosophila melanogaster]
gi|442620774|ref|NP_001262897.1| Rox8, isoform G [Drosophila melanogaster]
gi|442620776|ref|NP_001262898.1| Rox8, isoform H [Drosophila melanogaster]
gi|23172126|gb|AAN13978.1| Rox8, isoform D [Drosophila melanogaster]
gi|211938549|gb|ACJ13171.1| FI04408p [Drosophila melanogaster]
gi|440217818|gb|AAN13977.2| Rox8, isoform E [Drosophila melanogaster]
gi|440217819|gb|AGB96277.1| Rox8, isoform G [Drosophila melanogaster]
gi|440217820|gb|AGB96278.1| Rox8, isoform H [Drosophila melanogaster]
Length = 470
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/141 (34%), Positives = 73/141 (51%), Gaps = 14/141 (9%)
Query: 80 PRKACIKMNKVHEKRTNMNAYVRFKNLESVEKAL-EMNGHVIDEHTIRVDKALT------ 132
P K+C + E + A++ + N ++ AL MN + E I+V+ A +
Sbjct: 32 PVKSC---KIIREPGNDPYAFIEYSNYQAATTALTAMNKRLFLEKEIKVNWATSPGNQPK 88
Query: 133 TTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF--KAE 190
T S+ H IF+G++ E E E LR+AF GEI N R++RD HT KG+ +V+F KAE
Sbjct: 89 TDISSHHHIFVGDLSPEIETETLREAFAPFGEISNCRIVRDPHTMKSKGYAFVSFVKKAE 148
Query: 191 EEELRKAFESCGEIDNVRLIR 211
E +A G+ R IR
Sbjct: 149 AENAIQAMN--GQWIGSRSIR 167
>gi|302923245|ref|XP_003053634.1| hypothetical protein NECHADRAFT_74992 [Nectria haematococca mpVI
77-13-4]
gi|256734575|gb|EEU47921.1| hypothetical protein NECHADRAFT_74992 [Nectria haematococca mpVI
77-13-4]
Length = 569
Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 79/156 (50%), Gaps = 29/156 (18%)
Query: 60 PYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRT-NMNAYVRFKNLESVEKAL-EMNG 117
P +E++RFRSV A +LP++A + + T + NAYV + + + +A+ ++NG
Sbjct: 251 PPQTIESIRFRSVAFAGGSLPKRAAYITKSLMDATTKSANAYVVYSTIAAAREAVAKLNG 310
Query: 118 -HVIDEHTIRVDK-ALTTTKSNSHSIFIGNIPFEAEE----------------------- 152
V+D H +RVD A + + +F+GN+ F +E
Sbjct: 311 TQVLDRH-LRVDSVAHPSPTDHRRCVFVGNLGFVDDETILATNADGDTTQKKRNKTPSDI 369
Query: 153 -EELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 187
E L + F + G+++NVR++RD T +GKG YV F
Sbjct: 370 EEGLWRTFSTQGKVENVRVVRDSKTRVGKGIAYVQF 405
>gi|310793454|gb|EFQ28915.1| RNA recognition domain-containing protein [Glomerella graminicola
M1.001]
Length = 570
Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 83/172 (48%), Gaps = 21/172 (12%)
Query: 60 PYGEVETVRFRSVPVADITLPRKAC-IKMNKVHEKRTNMNAYVRFKNLESVEK-ALEMNG 117
P ++E++RFRSV + LP++A I + + E + NAYV F + K E+NG
Sbjct: 238 PPQKIESIRFRSVAFSGGGLPKRAAYITKSLMKETTKSANAYVVFSTPAAARKVCAELNG 297
Query: 118 HVIDEHTIRVDK-ALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIR--DQ 174
V+ + +RVD A + +F+GN+ F ID+ ++ D+
Sbjct: 298 TVVLDRHLRVDSVAHPAPTDHRRCVFVGNLGF----------------IDDETIVSTNDE 341
Query: 175 HTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 226
+ K V EE R + G+++NVR++RD T +GKGF YV F
Sbjct: 342 GETVQKKRTKVPADIEEGLWRTFGKHAGKVENVRVVRDPKTRVGKGFAYVQF 393
>gi|195054168|ref|XP_001993998.1| GH17992 [Drosophila grimshawi]
gi|193895868|gb|EDV94734.1| GH17992 [Drosophila grimshawi]
Length = 444
Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 74/148 (50%), Gaps = 25/148 (16%)
Query: 57 MFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMN 116
+ +P+G V ++R R T K K +K ++ ++NAYV + + EKAL +N
Sbjct: 184 LLQPFGTVNSIRLR-------TAGGKHLFK-HKQRKEAGSLNAYVVLNSAQVAEKALALN 235
Query: 117 GHVIDEHTIRVD---KALTTT-------------KSNSHSIFIGNIPFEAEEEELRKAFE 160
G E+ +RV KA TT N +IF+GN+ + A EE+LR+ F
Sbjct: 236 GTEFKENHLRVTPAAKAGTTAGNDLSSASSAPSDADNKRTIFVGNLKYSANEEKLREIFS 295
Query: 161 SCGEIDNVRLIRDQHTNIGKGFGYVNFK 188
SCGEID +R + D KG YV F+
Sbjct: 296 SCGEIDYIRCLHDGERGC-KGVAYVCFQ 322
>gi|195573327|ref|XP_002104645.1| GD18328 [Drosophila simulans]
gi|194200572|gb|EDX14148.1| GD18328 [Drosophila simulans]
Length = 824
Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 49/141 (34%), Positives = 73/141 (51%), Gaps = 14/141 (9%)
Query: 80 PRKACIKMNKVHEKRTNMNAYVRFKNLESVEKAL-EMNGHVIDEHTIRVDKALT------ 132
P K+C + E + A++ + N ++ AL MN + E I+V+ A +
Sbjct: 32 PVKSC---KIIREPGNDPYAFIEYSNYQAASTALTAMNKRLFLEKEIKVNWATSPGNQPK 88
Query: 133 TTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF--KAE 190
T S+ H IF+G++ E E E LR+AF GEI N R++RD HT KG+ +V+F KAE
Sbjct: 89 TDISSHHHIFVGDLSPEIETETLREAFAPFGEISNCRIVRDPHTMKSKGYAFVSFVKKAE 148
Query: 191 EEELRKAFESCGEIDNVRLIR 211
E +A G+ R IR
Sbjct: 149 AENAIQAMN--GQWIGSRSIR 167
>gi|189441636|gb|AAI67421.1| LOC734098 protein [Xenopus (Silurana) tropicalis]
Length = 254
Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 51/154 (33%), Positives = 80/154 (51%), Gaps = 4/154 (2%)
Query: 85 IKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKSNSHSIFIG 144
IKM+ + R+ ++ FK+ SV+K LE H +D I KA+ K IF+G
Sbjct: 83 IKMDP-NTGRSRGFGFILFKDAASVDKVLEQKEHRLDGRLIDPKKAMAMKKDPIKKIFVG 141
Query: 145 NIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEI 204
+ EA E+++R+ FE+ GEI+ + L D TN +GF ++ FK EEE ++K E +
Sbjct: 142 GLNPEAGEDKIREYFETFGEIEAIELPMDPKTNKRRGFVFITFK-EEEPVKKILEIS--M 198
Query: 205 DNVRLIRDQHTNIGKGFGYVNFKVSFTTLSSIFS 238
D ++L R H F + + +SSI S
Sbjct: 199 DLLQLYRLTHPREPVSLSTFLFYIVLSYISSIGS 232
Score = 44.7 bits (104), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 29/136 (21%), Positives = 57/136 (41%), Gaps = 45/136 (33%)
Query: 137 NSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK-------- 188
++ +F+G + ++ +++L+ F GE+ + + D +T +GFG++ FK
Sbjct: 50 DAGKMFVGGLSWDTSKKDLKDYFSKFGEVSDCTIKMDPNTGRSRGFGFILFKDAASVDKV 109
Query: 189 -------------------------------------AEEEELRKAFESCGEIDNVRLIR 211
A E+++R+ FE+ GEI+ + L
Sbjct: 110 LEQKEHRLDGRLIDPKKAMAMKKDPIKKIFVGGLNPEAGEDKIREYFETFGEIEAIELPM 169
Query: 212 DQHTNIGKGFGYVNFK 227
D TN +GF ++ FK
Sbjct: 170 DPKTNKRRGFVFITFK 185
>gi|400599227|gb|EJP66931.1| RNA recognition domain-containing protein [Beauveria bassiana ARSEF
2860]
Length = 561
Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 83/172 (48%), Gaps = 18/172 (10%)
Query: 60 PYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRT-NMNAYVRFKNLESVEKAL-EMNG 117
P +VE++RFRSV + ++P++A V E T + NAY+ F + + E+NG
Sbjct: 223 PSQKVESIRFRSVAFSGGSMPKRAAYITKSVMEATTHSTNAYIVFSTTAAARRVCKELNG 282
Query: 118 HVIDEHTIRVDK-ALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHT 176
+ IRVD A + + IF+GN+ F +E L + E + +
Sbjct: 283 SEVLGRHIRVDSVAHPSPTDHRRCIFVGNLGFVDDETMLNTNKDGEAESKKRNKV---PS 339
Query: 177 NIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKV 228
++ EE L + F G+++NVR++RD T +GKGF YV F V
Sbjct: 340 DV------------EEGLWRTFSKIGKVENVRVVRDPKTRVGKGFAYVQFYV 379
>gi|290996979|ref|XP_002681059.1| RRM domain-containing protein [Naegleria gruberi]
gi|284094682|gb|EFC48315.1| RRM domain-containing protein [Naegleria gruberi]
Length = 285
Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 59/100 (59%), Gaps = 8/100 (8%)
Query: 94 RTNMNAYVRFKNLESVEK-----ALEMNGHVIDEHTIRVDKALTTTKSNSHSIFIGNIPF 148
R+ +V F +E+ +K A+EM+G + ++ KA + +F+GN+P
Sbjct: 89 RSRGYGFVEFDEVEAAQKVVDLKAMEMDGREV---QLQQSKARDEFSGRTTQVFVGNLPE 145
Query: 149 EAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK 188
AEE+++R+ FE+CGEI+ VR+ +D+ T KGF +V F+
Sbjct: 146 SAEEQDIRELFETCGEIEEVRMPKDKDTEKKKGFAFVQFR 185
>gi|440632842|gb|ELR02761.1| hypothetical protein GMDG_05705 [Geomyces destructans 20631-21]
Length = 590
Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 86/172 (50%), Gaps = 24/172 (13%)
Query: 60 PYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRT-NMNAYVRF-KNLESVEKALEMNG 117
P +VE++RFRS + TLP+KA + T + NAYV + + + E A +N
Sbjct: 269 PKPKVESIRFRST-AYESTLPKKASFATKALMAATTKSTNAYVVYTSSFAAREAAKRLNS 327
Query: 118 HVIDEHTIRVDKALTTTKSN-SHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQ-H 175
V+ + +RVD K++ +F+GN+ F +E + E D + R +
Sbjct: 328 TVVLDRHLRVDGVAHPAKTDHRRCVFVGNLGFVDDESMM-------DEGDETQRKRSKIP 380
Query: 176 TNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK 227
++I EE L + F GE+++VR++RD+ T +GKGF YV FK
Sbjct: 381 SDI------------EEGLWRQFGKAGEVESVRVVRDEKTRVGKGFAYVQFK 420
>gi|389744282|gb|EIM85465.1| RNA-binding domain-containing protein [Stereum hirsutum FP-91666
SS1]
Length = 564
Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 63/123 (51%), Gaps = 17/123 (13%)
Query: 99 AYVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKSN----------------SHSIF 142
YV F + ++VE AL++ G ID I VDK+ +K S ++F
Sbjct: 344 GYVEFTSPDAVEAALKLTGKEIDGRPINVDKSTGVSKDKVRDSRAKAFGDQKSEPSSTLF 403
Query: 143 IGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCG 202
+GN+ F A E+ L +AF S G++ VR+ D+ T KGF YV+F + E +KA +
Sbjct: 404 VGNLSFSASEDVLWEAFASYGDVKGVRMPTDRETGQPKGFAYVDF-TDIESAKKAHDEGA 462
Query: 203 EID 205
+D
Sbjct: 463 GMD 465
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 51/93 (54%), Gaps = 9/93 (9%)
Query: 128 DKALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 187
D+A+TT IF+G + + + + L+ FE CGE+ + R+ D++T +GFGYV F
Sbjct: 296 DEAVTT-------IFVGRLSWNVDNDWLKSEFEECGEVVSARVQMDRNTGKSRGFGYVEF 348
Query: 188 KAEEEELRKAFESCG-EIDNVRLIRDQHTNIGK 219
+ + + A + G EID + D+ T + K
Sbjct: 349 TS-PDAVEAALKLTGKEIDGRPINVDKSTGVSK 380
Score = 41.2 bits (95), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 28/44 (63%)
Query: 183 GYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 226
G +++ + + L+ FE CGE+ + R+ D++T +GFGYV F
Sbjct: 305 GRLSWNVDNDWLKSEFEECGEVVSARVQMDRNTGKSRGFGYVEF 348
>gi|195069101|ref|XP_001996948.1| GH22238 [Drosophila grimshawi]
gi|193891982|gb|EDV90848.1| GH22238 [Drosophila grimshawi]
Length = 370
Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 74/148 (50%), Gaps = 25/148 (16%)
Query: 57 MFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMN 116
+ +P+G V ++R R T K K +K ++ ++NAYV + + EKAL +N
Sbjct: 184 LLQPFGTVNSIRLR-------TAGGKHLFK-HKQRKEAGSLNAYVVLNSAQVAEKALALN 235
Query: 117 GHVIDEHTIRVD---KALTTT-------------KSNSHSIFIGNIPFEAEEEELRKAFE 160
G E+ +RV KA TT N +IF+GN+ + A EE+LR+ F
Sbjct: 236 GTEFKENHLRVTPAAKAGTTAGNDLSSASSAPSDADNKRTIFVGNLKYSANEEKLREIFS 295
Query: 161 SCGEIDNVRLIRDQHTNIGKGFGYVNFK 188
SCGEID +R + D KG YV F+
Sbjct: 296 SCGEIDYIRCLHDGERGC-KGVAYVCFQ 322
>gi|336261210|ref|XP_003345396.1| hypothetical protein SMAC_04627 [Sordaria macrospora k-hell]
gi|380090650|emb|CCC11645.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 591
Score = 70.1 bits (170), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 89/183 (48%), Gaps = 17/183 (9%)
Query: 49 HALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRT-NMNAYVRFKNLE 107
H S + KP +VE++RFRS A +P++A V E T + NAYV F
Sbjct: 224 HMASVLDKEAKPAQKVESIRFRSTAFATAAIPKRAAYIKKSVMEATTKSTNAYVVFSTPA 283
Query: 108 SVEKAL-EMNGHVIDEHTIRVDK-ALTTTKSNSHSIFIGNIPFEAEEEELR-KAFESCGE 164
+ A ++NG ++ + +RVD A + +F+GN+ F +E L+ K E E
Sbjct: 284 AARLACSKLNGTIVLDRHVRVDSVAHPAPVDHKRCVFVGNLGFVDDESVLQTKVNEEGKE 343
Query: 165 IDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAF-ESCGEIDNVRLIRDQHTNIGKGFGY 223
+ + Q ++ EE L + F + G++++VR++RD T +GKGF Y
Sbjct: 344 VTEKKKRTKQPMDV------------EEGLWRVFGKEGGKVESVRVVRDPVTRVGKGFAY 391
Query: 224 VNF 226
V F
Sbjct: 392 VQF 394
>gi|195996811|ref|XP_002108274.1| hypothetical protein TRIADDRAFT_37071 [Trichoplax adhaerens]
gi|190589050|gb|EDV29072.1| hypothetical protein TRIADDRAFT_37071 [Trichoplax adhaerens]
Length = 351
Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 78/155 (50%), Gaps = 30/155 (19%)
Query: 57 MFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMN 116
+F P GE+ +R +AD + +R+ AYV F+ ++SV+KAL++N
Sbjct: 15 LFSPVGEMRDIRV----IAD-------------RNSRRSKGIAYVEFRLVDSVDKALKLN 57
Query: 117 GHVIDEHTIRVDKALT------------TTKSNSHSIFIGNIPFEAEEEELRKAFESCGE 164
G ++ I + + + + ++IG++ + E+ LR FE G
Sbjct: 58 GTKVEGIPIMIQRTQSEKNKIAALQAQQKAQQGPTRLYIGSLHYNINEDMLRAIFEPFGL 117
Query: 165 IDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
++NV +IRD TN+ KG+G++ +K E + R+A E
Sbjct: 118 VENVNIIRDSDTNVSKGYGFIQYK-EPDSARRALE 151
>gi|189204099|ref|XP_001938385.1| nucleolar protein 12 [Pyrenophora tritici-repentis Pt-1C-BFP]
gi|187985484|gb|EDU50972.1| nucleolar protein 12 [Pyrenophora tritici-repentis Pt-1C-BFP]
Length = 562
Score = 70.1 bits (170), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 77/152 (50%), Gaps = 25/152 (16%)
Query: 60 PYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRT-NMNAYVRFKNLESVEKALE-MNG 117
P ++E++RFRS +LP++A ++ E T + NAY + + +A++ +NG
Sbjct: 278 PPHKIESIRFRSTAFGS-SLPKRAAFAKKEIMEATTKSTNAYAVYTTKVAAREAVKRLNG 336
Query: 118 HVIDEHTIRVDKALTTTK-SNSHSIFIGNIPF---EAE------------------EEEL 155
V+ + VD TK + +F+GN+PF E++ EE L
Sbjct: 337 SVLLNRHLHVDSVAHPTKVDHRRCVFVGNLPFVDDESQTPTVEGDKPKSKKPASDIEEGL 396
Query: 156 RKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 187
F CG++++VR++RD T +GKGF YV F
Sbjct: 397 WVQFAKCGKVESVRVVRDAKTRVGKGFAYVQF 428
>gi|304798|gb|AAA28828.1| polyadenylate-binding protein [Drosophila melanogaster]
gi|304800|gb|AAA02941.1| polyadenylate-binding protein [Drosophila melanogaster]
Length = 465
Score = 70.1 bits (170), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 45/127 (35%), Positives = 68/127 (53%), Gaps = 12/127 (9%)
Query: 80 PRKACIKMNKVHEKRTNMNAYVRFKNLESVEKAL-EMNGHVIDEHTIRVDKALT------ 132
P K+C + E + A++ + N ++ AL MN + E I+V+ A +
Sbjct: 32 PVKSC---KIIREPGNDPYAFIEYSNYQAATTALTAMNKRLFLEKEIKVNWATSPGNQPK 88
Query: 133 TTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF--KAE 190
T S+ H IF+G++ E E E LR+AF GEI N R++RD HT KG+ +V+F KAE
Sbjct: 89 TDISSHHHIFVGDLSPEIETETLREAFAPFGEISNCRIVRDPHTMKSKGYAFVSFVKKAE 148
Query: 191 EEELRKA 197
E +A
Sbjct: 149 AENAIQA 155
>gi|194910009|ref|XP_001982056.1| GG12380 [Drosophila erecta]
gi|190656694|gb|EDV53926.1| GG12380 [Drosophila erecta]
Length = 464
Score = 70.1 bits (170), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 48/141 (34%), Positives = 73/141 (51%), Gaps = 14/141 (9%)
Query: 80 PRKACIKMNKVHEKRTNMNAYVRFKNLESVEKAL-EMNGHVIDEHTIRVDKALT------ 132
P K+C + E + A++ + N ++ AL MN + + I+V+ A +
Sbjct: 32 PVKSC---KIIREPGNDPYAFIEYSNYQAATTALTAMNKRLFLDKEIKVNWATSPGNQPK 88
Query: 133 TTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF--KAE 190
T S+ H IF+G++ E E E LR+AF GEI N R++RD HT KG+ +V+F KAE
Sbjct: 89 TDISSHHHIFVGDLSPEIETETLREAFAPFGEISNCRIVRDPHTMKSKGYAFVSFVKKAE 148
Query: 191 EEELRKAFESCGEIDNVRLIR 211
E +A G+ R IR
Sbjct: 149 AENAIQAMN--GQWIGSRSIR 167
>gi|195504962|ref|XP_002099304.1| GE10834 [Drosophila yakuba]
gi|194185405|gb|EDW99016.1| GE10834 [Drosophila yakuba]
Length = 464
Score = 70.1 bits (170), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 48/141 (34%), Positives = 73/141 (51%), Gaps = 14/141 (9%)
Query: 80 PRKACIKMNKVHEKRTNMNAYVRFKNLESVEKAL-EMNGHVIDEHTIRVDKALT------ 132
P K+C + E + A++ + N ++ AL MN + + I+V+ A +
Sbjct: 32 PVKSC---KIIREPGNDPYAFIEYSNYQAATTALTAMNKRLFLDKEIKVNWATSPGNQPK 88
Query: 133 TTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF--KAE 190
T S+ H IF+G++ E E E LR+AF GEI N R++RD HT KG+ +V+F KAE
Sbjct: 89 TDISSHHHIFVGDLSPEIETETLREAFAPFGEISNCRIVRDPHTMKSKGYAFVSFVKKAE 148
Query: 191 EEELRKAFESCGEIDNVRLIR 211
E +A G+ R IR
Sbjct: 149 AENAIQAMN--GQWIGSRSIR 167
>gi|346324418|gb|EGX94015.1| nucleolar protein 12 [Cordyceps militaris CM01]
Length = 552
Score = 69.7 bits (169), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 80/166 (48%), Gaps = 27/166 (16%)
Query: 49 HALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRT-NMNAYVRFKNLE 107
H +++ +P +VE++RFRSV + ++P++A V E T + NAYV F
Sbjct: 227 HLATALDKEAQPLQKVESIRFRSVAFSTGSMPKRAAYITKSVMEATTHSTNAYVVFSTDA 286
Query: 108 SVEKALE-MNGHVIDEHTIRVDK-ALTTTKSNSHSIFIGNIPFEAEE------------- 152
+ + + +NG I +RVD A + ++ +F+GN+ F +E
Sbjct: 287 AARRVCQQLNGTEILGRHLRVDSVAHPSPTAHRRCVFVGNLGFVDDETVLNTNKDGDKGT 346
Query: 153 -----------EELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 187
E L + F G+++NVR++RD T +GKGF YV F
Sbjct: 347 KKRNKVPSDVEEGLWRLFSKNGKVENVRVVRDPKTRVGKGFAYVQF 392
>gi|195110141|ref|XP_001999640.1| GI22960 [Drosophila mojavensis]
gi|193916234|gb|EDW15101.1| GI22960 [Drosophila mojavensis]
Length = 475
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 66/122 (54%), Gaps = 12/122 (9%)
Query: 80 PRKACIKMNKVHEKRTNMNAYVRFKNLESVEKAL-EMNGHVIDEHTIRVDKALT------ 132
P K+C + E + A++ + N ++ AL MN V + I+V+ A +
Sbjct: 32 PVKSC---KIIREPGNDPYAFIEYSNYQAASTALTAMNKRVFLDKEIKVNWATSPGNTPK 88
Query: 133 TTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF--KAE 190
T S+ H IF+G++ E E E LR+AF GEI N R++RD HT KG+ +V+F KAE
Sbjct: 89 TDISSHHHIFVGDLSPEIETETLREAFAPFGEISNCRIVRDPHTMKSKGYAFVSFVKKAE 148
Query: 191 EE 192
E
Sbjct: 149 AE 150
>gi|350296302|gb|EGZ77279.1| nucleolar protein 12 [Neurospora tetrasperma FGSC 2509]
Length = 594
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 89/183 (48%), Gaps = 17/183 (9%)
Query: 49 HALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRT-NMNAYVRFKNLE 107
H S + KP +VE++RFRS A +P++A V E T + NAYV +
Sbjct: 224 HMASVLDKEAKPAQKVESIRFRSTAFATAAIPKRAAYIKKSVMEATTKSTNAYVVYSTPA 283
Query: 108 SVEKAL-EMNGHVIDEHTIRVDK-ALTTTKSNSHSIFIGNIPFEAEEEELR-KAFESCGE 164
+ A ++NG ++ + IRVD A + +F+GN+ F +E L+ K E E
Sbjct: 284 AARLACSKLNGTIVLDRHIRVDSVAHPAPVDHKRCVFVGNLGFVDDETVLQVKVDEDGKE 343
Query: 165 IDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAF-ESCGEIDNVRLIRDQHTNIGKGFGY 223
+ + Q ++ EE L + F + G++++VR++RD T +GKGF Y
Sbjct: 344 VTEKKKRTKQPMDV------------EEGLWRVFGKEGGKVESVRVVRDPVTRVGKGFAY 391
Query: 224 VNF 226
V F
Sbjct: 392 VQF 394
>gi|380492766|emb|CCF34363.1| RNA recognition domain-containing protein [Colletotrichum
higginsianum]
Length = 470
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 88/183 (48%), Gaps = 21/183 (11%)
Query: 49 HALSSVTSMFKPYGEVETVRFRSVPVADITLPRKAC-IKMNKVHEKRTNMNAYVRFKNLE 107
H +S + P ++E++RFRS+ + LP++A I + ++E + NAYV F
Sbjct: 212 HLVSVLDKDATPPQKIESIRFRSIAFSGGALPKRAAYITKSLMNETTKSANAYVVFSTPA 271
Query: 108 SVEK-ALEMNGHVIDEHTIRVDK-ALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEI 165
+ K E+NG ++ + +RVD A + +F+GN+ F I
Sbjct: 272 AARKVCAELNGTIVLDRHLRVDSVAHPAPTDHRRCVFVGNLGF----------------I 315
Query: 166 DNVRLI--RDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGY 223
D+ ++ ++ + K V EE R + G+++NVR++RD T +GKGF Y
Sbjct: 316 DDETILTTNEEGETVQKKRTKVPADIEEGLWRTFGKHAGKVENVRVVRDPKTRVGKGFAY 375
Query: 224 VNF 226
V F
Sbjct: 376 VQF 378
>gi|85091441|ref|XP_958903.1| nucleolar protein 12 [Neurospora crassa OR74A]
gi|74696324|sp|Q7S2L7.1|NOP12_NEUCR RecName: Full=Nucleolar protein 12
gi|28920294|gb|EAA29667.1| nucleolar protein 12 [Neurospora crassa OR74A]
Length = 594
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 89/183 (48%), Gaps = 17/183 (9%)
Query: 49 HALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRT-NMNAYVRFKNLE 107
H S + KP +VE++RFRS A +P++A V E T + NAYV +
Sbjct: 224 HMASVLDKEAKPAQKVESIRFRSTAFATAAIPKRAAYIKKSVMEATTKSTNAYVVYSTPA 283
Query: 108 SVEKAL-EMNGHVIDEHTIRVDK-ALTTTKSNSHSIFIGNIPFEAEEEELR-KAFESCGE 164
+ A ++NG ++ + IRVD A + +F+GN+ F +E L+ K E E
Sbjct: 284 AARLACSKLNGTIVLDRHIRVDSVAHPAPVDHKRCVFVGNLGFVDDETVLQVKVDEDGKE 343
Query: 165 IDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAF-ESCGEIDNVRLIRDQHTNIGKGFGY 223
+ + Q ++ EE L + F + G++++VR++RD T +GKGF Y
Sbjct: 344 VTEKKKRTKQPMDV------------EEGLWRVFGKEGGKVESVRVVRDPVTRVGKGFAY 391
Query: 224 VNF 226
V F
Sbjct: 392 VQF 394
>gi|336464220|gb|EGO52460.1| nucleolar protein 12 [Neurospora tetrasperma FGSC 2508]
Length = 594
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 89/183 (48%), Gaps = 17/183 (9%)
Query: 49 HALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRT-NMNAYVRFKNLE 107
H S + KP +VE++RFRS A +P++A V E T + NAYV +
Sbjct: 224 HLASVLDKEAKPAQKVESIRFRSTAFATAAIPKRAAYIKKSVMEATTKSTNAYVVYSTPA 283
Query: 108 SVEKAL-EMNGHVIDEHTIRVDK-ALTTTKSNSHSIFIGNIPFEAEEEELR-KAFESCGE 164
+ A ++NG ++ + IRVD A + +F+GN+ F +E L+ K E E
Sbjct: 284 AARLACSKLNGTIVLDRHIRVDSVAHPAPVDHKRCVFVGNLGFVDDETVLQVKVDEDGKE 343
Query: 165 IDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAF-ESCGEIDNVRLIRDQHTNIGKGFGY 223
+ + Q ++ EE L + F + G++++VR++RD T +GKGF Y
Sbjct: 344 VTEKKKRTKQPMDV------------EEGLWRVFGKEGGKVESVRVVRDPVTRVGKGFAY 391
Query: 224 VNF 226
V F
Sbjct: 392 VQF 394
>gi|195445204|ref|XP_002070221.1| GK11939 [Drosophila willistoni]
gi|194166306|gb|EDW81207.1| GK11939 [Drosophila willistoni]
Length = 469
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/141 (34%), Positives = 72/141 (51%), Gaps = 14/141 (9%)
Query: 80 PRKACIKMNKVHEKRTNMNAYVRFKNLESVEKAL-EMNGHVIDEHTIRVDKALT------ 132
P K+C + E + A++ + N ++ AL MN V E I+V+ A +
Sbjct: 32 PVKSC---KIIREPGNDPYAFIEYSNYQAATTALTAMNKRVFLEKEIKVNWATSPGNQPK 88
Query: 133 TTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF--KAE 190
T S+ H IF+G++ E E E LR+AF GEI N R++RD T KG+ +V+F KAE
Sbjct: 89 TDISSHHHIFVGDLSPEIETETLREAFAPFGEISNCRIVRDPQTMKSKGYAFVSFVKKAE 148
Query: 191 EEELRKAFESCGEIDNVRLIR 211
E +A G+ R IR
Sbjct: 149 AENAIQAMN--GQWIGSRSIR 167
>gi|159123747|gb|EDP48866.1| RNA binding protein, putative [Aspergillus fumigatus A1163]
Length = 538
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 60/212 (28%), Positives = 109/212 (51%), Gaps = 24/212 (11%)
Query: 26 VFL-NIWKMALKLK-MNPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADIT-LPRK 82
VFL N+ A+K K +L K LS++ P+ +VE++RFRSV A +P++
Sbjct: 205 VFLGNVSSQAIKSKSAKKTLLKHLASFLSTLPESTGPH-KVESIRFRSVAFASGGKVPKR 263
Query: 83 ACIKMNKVHEKRT-NMNAYVRFKNLESVEKA-LEMNGHVIDEHTIRVDKALTTTK-SNSH 139
A ++ + T + NAYV + +++ KA +NG V+ + +RVD ++ +
Sbjct: 264 AAFARREILDDTTPSTNAYVVYSTVQAARKAPAALNGTVVLDRHLRVDSVAHPSQIDHKR 323
Query: 140 SIFIGNIPF-----EAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEEL 194
+F+GN+ F + EE++ +K + G D + +G + F A +
Sbjct: 324 CVFVGNLDFVDNETDPEEDDKKKKKKKSGPAD-----------VEEGL-WRTFNAHTKGS 371
Query: 195 RKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 226
++ + G +++VR++RD+ T +GKGF YV F
Sbjct: 372 KERASTRGNVESVRVVRDRTTRVGKGFAYVQF 403
>gi|332376136|gb|AEE63208.1| unknown [Dendroctonus ponderosae]
Length = 371
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/141 (35%), Positives = 71/141 (50%), Gaps = 14/141 (9%)
Query: 80 PRKACIKMNKVHEKRTNMNAYVRFKNLESVEKAL-EMNGHVIDEHTIRVDKALT------ 132
P K C + E + A+V F N +S AL MN V + ++V+ A +
Sbjct: 33 PVKGC---KIIREPGNDPYAFVEFTNHQSASTALIAMNKRVFLDKEMKVNWATSPGNQPK 89
Query: 133 TTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF--KAE 190
T SN H IF+G++ E E + LR+AF GEI N R++RD T KG+ +V+F KAE
Sbjct: 90 TDTSNHHHIFVGDLSPEIETDTLREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAE 149
Query: 191 EEELRKAFESCGEIDNVRLIR 211
E +A G+ R IR
Sbjct: 150 AENAIQAMN--GQWLGSRSIR 168
>gi|70983440|ref|XP_747247.1| RNA binding protein [Aspergillus fumigatus Af293]
gi|74667235|sp|Q4WCH5.1|NOP12_ASPFU RecName: Full=Nucleolar protein 12
gi|66844873|gb|EAL85209.1| RNA binding protein, putative [Aspergillus fumigatus Af293]
Length = 538
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 60/212 (28%), Positives = 109/212 (51%), Gaps = 24/212 (11%)
Query: 26 VFL-NIWKMALKLK-MNPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADIT-LPRK 82
VFL N+ A+K K +L K LS++ P+ +VE++RFRSV A +P++
Sbjct: 205 VFLGNVSSQAIKSKSAKKTLLKHLASFLSTLPESTGPH-KVESIRFRSVAFASGGKVPKR 263
Query: 83 ACIKMNKVHEKRT-NMNAYVRFKNLESVEKA-LEMNGHVIDEHTIRVDKALTTTK-SNSH 139
A ++ + T + NAYV + +++ KA +NG V+ + +RVD ++ +
Sbjct: 264 AAFARREILDDTTPSTNAYVVYSTVQAARKAPAALNGTVVLDRHLRVDSVAHPSQIDHKR 323
Query: 140 SIFIGNIPF-----EAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEEL 194
+F+GN+ F + EE++ +K + G D + +G + F A +
Sbjct: 324 CVFVGNLDFVDNETDPEEDDKKKKKKKSGPAD-----------VEEGL-WRTFNAHTKGS 371
Query: 195 RKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 226
++ + G +++VR++RD+ T +GKGF YV F
Sbjct: 372 KERASTRGNVESVRVVRDRTTRVGKGFAYVQF 403
>gi|393246659|gb|EJD54168.1| RNA-binding domain-containing protein [Auricularia delicata
TFB-10046 SS5]
Length = 531
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/147 (33%), Positives = 74/147 (50%), Gaps = 22/147 (14%)
Query: 83 ACIKMNKVHEKRTNMNAYVRFKNLESVEKALE-MNGHVIDEHTIRVD------------- 128
A ++M++ K YV F + S +KA+E MNG ID + +D
Sbjct: 301 ARVQMDRQTGKSKGFG-YVEFADAASAKKAVETMNGREIDGRPVNLDLATPRGPPNPERR 359
Query: 129 -KALTTTKSN-SHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVN 186
KA ++S S ++F+GN+ F A ++ + + F + GE+ NVRL D+ + KGFGYV
Sbjct: 360 AKAFGDSRSEPSATLFVGNLAFSATQDAVYELFGAVGEVVNVRLPTDRDSGQPKGFGYVE 419
Query: 187 FKAEEEELRKAFESCGEID----NVRL 209
F A+ E KA G D N+RL
Sbjct: 420 F-ADVETASKALNELGGTDFEGRNIRL 445
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 5/79 (6%)
Query: 139 HSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAF 198
SIF+G + + ++E L+ F GE+ + R+ D+ T KGFGYV F A+ +KA
Sbjct: 272 KSIFVGRLSWNVDDEWLKTEFAEAGEVVSARVQMDRQTGKSKGFGYVEF-ADAASAKKAV 330
Query: 199 ESCGEIDNVRLIRDQHTNI 217
E+ N R I + N+
Sbjct: 331 ETM----NGREIDGRPVNL 345
Score = 37.7 bits (86), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 26/44 (59%)
Query: 183 GYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 226
G +++ ++E L+ F GE+ + R+ D+ T KGFGYV F
Sbjct: 277 GRLSWNVDDEWLKTEFAEAGEVVSARVQMDRQTGKSKGFGYVEF 320
>gi|169861389|ref|XP_001837329.1| single-stranded DNA binding protein [Coprinopsis cinerea
okayama7#130]
gi|116502051|gb|EAU84946.1| single-stranded DNA binding protein [Coprinopsis cinerea
okayama7#130]
Length = 569
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/146 (33%), Positives = 75/146 (51%), Gaps = 20/146 (13%)
Query: 83 ACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVD-------------K 129
A ++M++ K YV F +E+ +KALE+NG ID I+VD +
Sbjct: 356 ATVQMDRNTGKSRGF-GYVHFTTVEAAQKALELNGKEIDNRPIKVDISTPRNPDAARQKR 414
Query: 130 ALT---TTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVN 186
A T T S+++F+GN+ F E+ + F G + +VRL D+ + KGFGYV
Sbjct: 415 AQTFGDVTSPPSNTLFVGNLSFNTSEDSVWSLFNDYG-VKSVRLPTDRESGRPKGFGYVE 473
Query: 187 FKAEEEELRKAFESCGEID-NVRLIR 211
F+ + E +KAFE+ D + R IR
Sbjct: 474 FE-DVEGAKKAFEANNGADLDGRPIR 498
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 45/75 (60%), Gaps = 3/75 (4%)
Query: 138 SHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKA 197
S ++F+G + + + + L F SCGEI++ + D++T +GFGYV+F E +KA
Sbjct: 326 SKAVFVGQLSWNVDNDWLASEFASCGEIESATVQMDRNTGKSRGFGYVHF-TTVEAAQKA 384
Query: 198 FESCG-EIDNVRLIR 211
E G EIDN R I+
Sbjct: 385 LELNGKEIDN-RPIK 398
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 28/44 (63%)
Query: 183 GYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 226
G +++ + + L F SCGEI++ + D++T +GFGYV+F
Sbjct: 332 GQLSWNVDNDWLASEFASCGEIESATVQMDRNTGKSRGFGYVHF 375
>gi|115491023|ref|XP_001210139.1| nucleolar protein 12 [Aspergillus terreus NIH2624]
gi|114196999|gb|EAU38699.1| nucleolar protein 12 [Aspergillus terreus NIH2624]
Length = 532
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 57/198 (28%), Positives = 92/198 (46%), Gaps = 37/198 (18%)
Query: 26 VFL-NIWKMALKLK-MNPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADIT-LPRK 82
VFL N+ A+K K +L + LS++ P+ +VE++RFRS A +P++
Sbjct: 203 VFLGNVSSEAIKSKSAKKTLLRHLASVLSTLPESTGPH-KVESIRFRSTAFASGGKIPKR 261
Query: 83 AC-IKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTK-SNSHS 140
A K + E + NAY + ++ KAL +NG V+ + +RVD K N
Sbjct: 262 AAFAKRELLDETTPSTNAYAVYSTIQGARKALSLNGTVVLDRHLRVDSVAHPAKIDNKRC 321
Query: 141 IFIGNIPFEAE-------------------EEELRKAFES------------CGEIDNVR 169
+F+GN+ F + EE L + F + G +++VR
Sbjct: 322 VFVGNLDFVDQEGEMEGEEKKKKKRAPADVEEGLWRTFNAHTGGSKKGDDAKKGSVESVR 381
Query: 170 LIRDQHTNIGKGFGYVNF 187
++RD+ T +GKGF YV F
Sbjct: 382 VVRDRATRVGKGFAYVQF 399
>gi|407929215|gb|EKG22050.1| Nucleotide-binding alpha-beta plait [Macrophomina phaseolina MS6]
Length = 436
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 86/169 (50%), Gaps = 22/169 (13%)
Query: 59 KPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRT-NMNAYVRFKNLESV-EKALEMN 116
KP + E++RFRS P + +P+KA ++ E+ T + NAYV + ++ E A +N
Sbjct: 157 KPPHKFESIRFRSTPFS-TYVPKKAAFAKKEILEETTHSTNAYVVYSTQQAAREAARRLN 215
Query: 117 GHVIDEHTIRVDKALTTTKSN-SHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQH 175
G ++ E IRVD+ K++ +F+GN+ F +D+ +I++
Sbjct: 216 GTIVLERHIRVDEVAHPAKTDHRRCVFVGNLGF----------------VDDESMIQEAE 259
Query: 176 TN-IGKGFGYVNFKAE-EEELRKAFESCGEIDNVRLIRDQHTNIGKGFG 222
+ IGK + EE L + F G +++VR++RD T +GKGF
Sbjct: 260 SKRIGKEIRKRKEPGDVEEGLWRTFGKVGTVESVRVVRDPKTRVGKGFA 308
>gi|115474525|ref|NP_001060859.1| Os08g0117100 [Oryza sativa Japonica Group]
gi|50725630|dbj|BAD33097.1| putative RNA-binding protein RNP-D precursor [Oryza sativa Japonica
Group]
gi|113622828|dbj|BAF22773.1| Os08g0117100 [Oryza sativa Japonica Group]
gi|125559951|gb|EAZ05399.1| hypothetical protein OsI_27607 [Oryza sativa Indica Group]
gi|215704603|dbj|BAG94231.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 319
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 85/173 (49%), Gaps = 27/173 (15%)
Query: 57 MFKPYGEVETVRFRSVPVADITLPRKAC--IKMNKVHEKRTNMNAYVRFKNLESVEKALE 114
+FKPYG V +V P ++ + C + M + E RT MNA F +L+ E ++
Sbjct: 153 LFKPYGTVLSVEISRDPETGLS---RGCGFVTMRSLPEARTAMNALDGF-DLDGREMLVK 208
Query: 115 MNGHVIDE-------HTIRVDKALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDN 167
++ V+ + HT V + + H I++GNI + E +ELR+ F CG + +
Sbjct: 209 LSSDVVSKRRNINMTHTPPVKDHIFESP---HKIYVGNIAWSVEPQELREYFSQCGTVVS 265
Query: 168 VRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVR------LIRDQH 214
RL+ D+ G+ +G+++F + EE E+ ++DN L+R H
Sbjct: 266 TRLLTDRKGGRGRVYGFLSFASAEE-----LEAALKLDNTHFHGRNILVRQAH 313
>gi|405963075|gb|EKC28679.1| ELAV-like protein 2 [Crassostrea gigas]
Length = 502
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 60/108 (55%), Gaps = 5/108 (4%)
Query: 90 VHEKRTNMN---AYVRFKNLESVEKAL-EMNGHVIDEHTIRVDKAL-TTTKSNSHSIFIG 144
V +K TN + +V + N E E+A+ EMNG +D TI+V A ++S +I+I
Sbjct: 223 VRDKATNYSYGFGFVDYVNEEDAERAIHEMNGQKMDHKTIKVSYARKNDSESKGANIYIA 282
Query: 145 NIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEE 192
NIP EEEL F GEI VRL+RD+ TN KG G+V + E
Sbjct: 283 NIPRSFGEEELGAHFRQFGEIIQVRLLRDKSTNESKGVGFVYYTKRSE 330
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 54/134 (40%), Gaps = 47/134 (35%)
Query: 140 SIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAE--------- 190
++ + +P +E+ ++ FE G + + +++RD+ TN GFG+V++ E
Sbjct: 192 NLIVNYLPQTLSDEDFKELFEKIGPLKSYKIVRDKATNYSYGFGFVDYVNEEDAERAIHE 251
Query: 191 --------------------------------------EEELRKAFESCGEIDNVRLIRD 212
EEEL F GEI VRL+RD
Sbjct: 252 MNGQKMDHKTIKVSYARKNDSESKGANIYIANIPRSFGEEELGAHFRQFGEIIQVRLLRD 311
Query: 213 QHTNIGKGFGYVNF 226
+ TN KG G+V +
Sbjct: 312 KSTNESKGVGFVYY 325
Score = 38.5 bits (88), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 28/48 (58%)
Query: 141 IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK 188
+F+ NI ++AEE+ L + F G + V +I D N KG+G+V K
Sbjct: 427 LFVYNIGYDAEEKTLWQLFAPLGTVTKVNVIMDHVRNQCKGYGFVTMK 474
>gi|195400098|ref|XP_002058655.1| GJ14540 [Drosophila virilis]
gi|194142215|gb|EDW58623.1| GJ14540 [Drosophila virilis]
Length = 472
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/141 (34%), Positives = 72/141 (51%), Gaps = 14/141 (9%)
Query: 80 PRKACIKMNKVHEKRTNMNAYVRFKNLESVEKAL-EMNGHVIDEHTIRVDKALT------ 132
P K+C + E + A++ + N ++ AL MN V + I+V+ A +
Sbjct: 32 PVKSC---KIIREPGNDPYAFIEYSNYQAASTALTAMNKRVFLDKEIKVNWATSPGNTPK 88
Query: 133 TTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF--KAE 190
T S+ H IF+G++ E E E LR+AF GEI N R++RD T KG+ +V+F KAE
Sbjct: 89 TDISSHHHIFVGDLSPEIETETLREAFAPFGEISNCRIVRDPQTMKSKGYAFVSFVKKAE 148
Query: 191 EEELRKAFESCGEIDNVRLIR 211
E +A G+ R IR
Sbjct: 149 AENAIQAMN--GQWIGSRSIR 167
>gi|170034332|ref|XP_001845028.1| RNA-binding protein 34 [Culex quinquefasciatus]
gi|167875661|gb|EDS39044.1| RNA-binding protein 34 [Culex quinquefasciatus]
Length = 468
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/140 (35%), Positives = 73/140 (52%), Gaps = 19/140 (13%)
Query: 52 SSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEK 111
++ +F PYG + T+RFR+ ++L +K K ++ ++ YVRF E
Sbjct: 228 GAIKKLFMPYGRILTIRFRTS--DGVSLFKK------KDRKEAKSLICYVRFTTKEESIA 279
Query: 112 ALEMNGHVIDEHTIRVDKALTTTKSNSH---SIFIGNIPFEAEEEELRKAFESCGEIDNV 168
A MNG +++E+ IRV +L T K H ++F+GNI + + EL F GEI+ V
Sbjct: 280 ACAMNGQMVEENRIRV--SLQTQKHLGHIASTVFVGNISRKTTDNELYDFFGQVGEIEYV 337
Query: 169 RLIRDQHTNIGKGFGYVNFK 188
R I D KG GYV FK
Sbjct: 338 RQISD------KGIGYVCFK 351
>gi|195037090|ref|XP_001989998.1| GH19101 [Drosophila grimshawi]
gi|193894194|gb|EDV93060.1| GH19101 [Drosophila grimshawi]
Length = 476
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 48/141 (34%), Positives = 72/141 (51%), Gaps = 14/141 (9%)
Query: 80 PRKACIKMNKVHEKRTNMNAYVRFKNLESVEKAL-EMNGHVIDEHTIRVDKALT------ 132
P K+C + E + A++ + N ++ AL MN V + I+V+ A +
Sbjct: 32 PVKSC---KIIREPGNDPYAFIEYSNYQAASTALTAMNKRVFLDKEIKVNWATSPGNTPK 88
Query: 133 TTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF--KAE 190
T S+ H IF+G++ E E E LR+AF GEI N R++RD T KG+ +V+F KAE
Sbjct: 89 TDISSHHHIFVGDLSPEIETETLREAFAPFGEISNCRIVRDPQTMKSKGYAFVSFVKKAE 148
Query: 191 EEELRKAFESCGEIDNVRLIR 211
E +A G+ R IR
Sbjct: 149 AENAIQAMN--GQWIGSRSIR 167
>gi|410948034|ref|XP_003980746.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A/B [Felis
catus]
Length = 300
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 63/115 (54%), Gaps = 2/115 (1%)
Query: 85 IKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKSNSHSIFIG 144
IKM+ + R+ ++ FK+ SVEK L+ H +D I KA+ K IF+G
Sbjct: 69 IKMDP-NTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKKAMAMKKDPVKKIFVG 127
Query: 145 NIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
+ EA EE++R+ F GEI+ + L D TN +GF ++ FK EEE ++K E
Sbjct: 128 GLNPEATEEKIREYFGEFGEIEAIELPMDPKTNKRRGFVFITFK-EEEPVKKVLE 181
>gi|171846711|gb|AAI61598.1| LOC734098 protein [Xenopus (Silurana) tropicalis]
Length = 280
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 65/115 (56%), Gaps = 2/115 (1%)
Query: 85 IKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKSNSHSIFIG 144
IKM+ + R+ ++ FK+ SV+K LE H +D I KA+ K IF+G
Sbjct: 50 IKMDP-NTGRSRGFGFILFKDAASVDKVLEQKEHRLDGRLIDPKKAMAMKKDPIKKIFVG 108
Query: 145 NIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
+ EA E+++R+ FE+ GEI+ + L D TN +GF ++ FK EEE ++K E
Sbjct: 109 GLNPEAGEDKIREYFETFGEIEAIELPMDPKTNKRRGFVFITFK-EEEPVKKILE 162
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 29/132 (21%), Positives = 55/132 (41%), Gaps = 45/132 (34%)
Query: 141 IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK------------ 188
+F+G + ++ +++L+ F GE+ + + D +T +GFG++ FK
Sbjct: 21 MFVGGLSWDTSKKDLKDYFSKFGEVSDCTIKMDPNTGRSRGFGFILFKDAASVDKVLEQK 80
Query: 189 ---------------------------------AEEEELRKAFESCGEIDNVRLIRDQHT 215
A E+++R+ FE+ GEI+ + L D T
Sbjct: 81 EHRLDGRLIDPKKAMAMKKDPIKKIFVGGLNPEAGEDKIREYFETFGEIEAIELPMDPKT 140
Query: 216 NIGKGFGYVNFK 227
N +GF ++ FK
Sbjct: 141 NKRRGFVFITFK 152
>gi|409079870|gb|EKM80231.1| hypothetical protein AGABI1DRAFT_73218 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 568
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 51/149 (34%), Positives = 77/149 (51%), Gaps = 23/149 (15%)
Query: 83 ACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKSN----- 137
A +++++ + R+ YV F ++VEKAL+MNG+ ID I+VD + T SN
Sbjct: 337 ATVQLDR-NTGRSRGFGYVHFSTADAVEKALKMNGYEIDGRAIKVDLS-TPPNSNQIRER 394
Query: 138 ------------SHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYV 185
S ++FIGN+PF E+ L F+ + +RL D+ T KGFGYV
Sbjct: 395 RAKVFNDEISPPSSTLFIGNLPFSITEDGLWSYFDGH-SVKTIRLPTDRETGQLKGFGYV 453
Query: 186 NFKAEEEELRKAFE--SCGEIDNVRLIRD 212
+ E+ +KAFE S EI+ R+ D
Sbjct: 454 ELE-NVEDAKKAFEAISGQEIEGRRVRVD 481
Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 49/95 (51%), Gaps = 4/95 (4%)
Query: 119 VIDEHTIRVDKA-LTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTN 177
+DE K L + SIF+G + + + + L + F CGE+ + + D++T
Sbjct: 287 AVDEEQPEAKKVKLDPATPETLSIFVGQLSWSVDNDRLAQEFSECGEVSSATVQLDRNTG 346
Query: 178 IGKGFGYVNFKAEEEELRKAFESCG-EIDNVRLIR 211
+GFGYV+F + + + KA + G EID R I+
Sbjct: 347 RSRGFGYVHF-STADAVEKALKMNGYEIDG-RAIK 379
Score = 38.1 bits (87), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 28/47 (59%)
Query: 183 GYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKVS 229
G +++ + + L + F CGE+ + + D++T +GFGYV+F +
Sbjct: 313 GQLSWSVDNDRLAQEFSECGEVSSATVQLDRNTGRSRGFGYVHFSTA 359
>gi|426198367|gb|EKV48293.1| hypothetical protein AGABI2DRAFT_142473 [Agaricus bisporus var.
bisporus H97]
Length = 559
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 49/133 (36%), Positives = 68/133 (51%), Gaps = 22/133 (16%)
Query: 99 AYVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKSN-----------------SHSI 141
YV F ++VEKAL+MNG+ ID I+VD + T SN S ++
Sbjct: 352 GYVHFSTADAVEKALKMNGYEIDGRAIKVDLS-TPPNSNQIRERRAKVFNDEISPPSSTL 410
Query: 142 FIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE-- 199
FIGN+PF E+ L F+ + +RL D+ T KGFGYV + E+ +KAFE
Sbjct: 411 FIGNLPFSITEDGLWSYFDGH-SVKTIRLPTDRETGQLKGFGYVELE-NVEDAKKAFEAI 468
Query: 200 SCGEIDNVRLIRD 212
S EI+ R+ D
Sbjct: 469 SGQEIEGRRVRVD 481
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 49/95 (51%), Gaps = 4/95 (4%)
Query: 119 VIDEHTIRVDKA-LTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTN 177
+DE K L + SIF+G + + + + L + F CGE+ + + D++T
Sbjct: 287 AVDEEQPEAKKVKLDPATPETLSIFVGQLSWSVDNDRLAQEFSECGEVSSATVQLDRNTG 346
Query: 178 IGKGFGYVNFKAEEEELRKAFESCG-EIDNVRLIR 211
+GFGYV+F + + + KA + G EID R I+
Sbjct: 347 RSRGFGYVHF-STADAVEKALKMNGYEIDG-RAIK 379
Score = 38.5 bits (88), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 28/47 (59%)
Query: 183 GYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKVS 229
G +++ + + L + F CGE+ + + D++T +GFGYV+F +
Sbjct: 313 GQLSWSVDNDRLAQEFSECGEVSSATVQLDRNTGRSRGFGYVHFSTA 359
>gi|123468140|ref|XP_001317333.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121900064|gb|EAY05110.1| hypothetical protein TVAG_108440 [Trichomonas vaginalis G3]
Length = 332
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 77/145 (53%), Gaps = 10/145 (6%)
Query: 52 SSVTSMFKPYGEVETVRFRSVPVA-DITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVE 110
V + K +G +E+VR R++ D + +K ++ +K N +AYV FKN+E +
Sbjct: 76 DDVKRLCKEFGPIESVRIRNLQFKEDRKVNKKVAVRRGDF-DKTQNADAYVVFKNVEDRD 134
Query: 111 KAL-EMNGHVIDEHTIRVDKALT-------TTKSNSHSIFIGNIPFEAEEEELRKAFESC 162
KA+ + ++ T+R DKA + + ++ ++FIG + E+ LRK F +
Sbjct: 135 KAIVGLKNKEVEGFTLRTDKATPKNVSEKISNEESNRTVFIGQLKPTVTEDMLRKLFSNA 194
Query: 163 GEIDNVRLIRDQHTNIGKGFGYVNF 187
GEID+V++ RD+ T + YV F
Sbjct: 195 GEIDHVKIPRDRETGKSRYVAYVTF 219
>gi|125775095|ref|XP_001358799.1| GA18869 [Drosophila pseudoobscura pseudoobscura]
gi|195144954|ref|XP_002013461.1| GL24152 [Drosophila persimilis]
gi|54638540|gb|EAL27942.1| GA18869 [Drosophila pseudoobscura pseudoobscura]
gi|194102404|gb|EDW24447.1| GL24152 [Drosophila persimilis]
Length = 464
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 45/131 (34%), Positives = 68/131 (51%), Gaps = 11/131 (8%)
Query: 90 VHEKRTNMNAYVRFKNLESVEKAL-EMNGHVIDEHTIRVDKALT------TTKSNSHSIF 142
+ E + A++ + N ++ AL MN + E I+V+ A + T S+ H IF
Sbjct: 39 IREPGNDPYAFIEYSNYQAASTALTAMNKRLFLEKEIKVNWATSPGNQPKTDISSHHHIF 98
Query: 143 IGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF--KAEEEELRKAFES 200
+G++ E E E LR+AF GEI N R++RD T KG+ +V+F KAE E +A
Sbjct: 99 VGDLSPEIETETLREAFAPFGEISNCRIVRDPQTMKSKGYAFVSFVKKAEAENAIQAMN- 157
Query: 201 CGEIDNVRLIR 211
G+ R IR
Sbjct: 158 -GQWIGSRSIR 167
>gi|340520494|gb|EGR50730.1| predicted protein [Trichoderma reesei QM6a]
Length = 557
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 95/183 (51%), Gaps = 22/183 (12%)
Query: 49 HALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRT-NMNAYVRFKNLE 107
H S + P ++E++RFRSV + ++P++A + + T + NAY F
Sbjct: 226 HLASVLDKDASPPEKIESLRFRSVAFSTGSMPKRAAYITKSLMDATTKSTNAYAVFSTPA 285
Query: 108 SVEKAL-EMNG-HVIDEHTIRVDKALTTTKSNSHS-IFIGNIPFEAEEEELRKAFESCGE 164
+V K + E+NG V+ H IRVD + N + +F+GN+ F +E + + ++ GE
Sbjct: 286 AVRKVVAELNGTEVLGRH-IRVDSVAHPSPMNHRACVFVGNLGFVDDETVISQ--KAGGE 342
Query: 165 IDNVRLIRDQ-HTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGY 223
V R++ ++I EE L + F + G+++NVR++RD T +GKGF Y
Sbjct: 343 T--VEKKRNKVPSDI------------EEGLWRTFGTQGKVENVRVVRDSKTRVGKGFAY 388
Query: 224 VNF 226
V F
Sbjct: 389 VQF 391
>gi|301095902|ref|XP_002897050.1| conserved hypothetical protein [Phytophthora infestans T30-4]
gi|262108479|gb|EEY66531.1| conserved hypothetical protein [Phytophthora infestans T30-4]
Length = 286
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 65/125 (52%), Gaps = 17/125 (13%)
Query: 99 AYVRFKNLESVEKALEMNGHVI---------DEHTIRVDKALTTTKSNS--------HSI 141
A+V F + ++EKALE++G + E V+ AL N+ ++
Sbjct: 106 AHVVFDDEAALEKALELDGQYLFNRYLSIRRAEAPRAVEMALKEKTQNATKKAVKGCRTV 165
Query: 142 FIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESC 201
+I +P+E EE+ +R+A SCG I +VRL HT KGFGYV F +E+E L A S
Sbjct: 166 YIKQLPYEVEEDTIRQALASCGTITSVRLPIWNHTKKLKGFGYVEFSSEDEALAAARRSG 225
Query: 202 GEIDN 206
+I +
Sbjct: 226 MKIGD 230
Score = 43.5 bits (101), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 140 SIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
++++ IP++A E ++ F SCG + VR+ R Q + +G+ +V F +E L KA E
Sbjct: 63 TVYVEGIPYKASEGDIVTHFSSCGTVREVRMPRYQDSGKPRGYAHVVFD-DEAALEKALE 121
Query: 200 SCGE 203
G+
Sbjct: 122 LDGQ 125
>gi|409049562|gb|EKM59039.1| hypothetical protein PHACADRAFT_249208 [Phanerochaete carnosa
HHB-10118-sp]
Length = 292
Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 46/135 (34%), Positives = 71/135 (52%), Gaps = 18/135 (13%)
Query: 94 RTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKSN---------------- 137
R+ +V F + E+V+KALE+NG ID +I VDK++ ++
Sbjct: 78 RSRGFGFVTFASPEAVDKALELNGKEIDGRSINVDKSVEKDQNQVRERRARTFGDAPSEP 137
Query: 138 SHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKA 197
S +F+GN+ F+A EE+L + F G I +V + + + KGFGYV F+ + E +KA
Sbjct: 138 SSRLFVGNLSFDATEEQLWEVFSDYGSIKSVHMPTSRDSGRPKGFGYVEFE-DIESAKKA 196
Query: 198 FES-CGEIDNVRLIR 211
ES G+ R IR
Sbjct: 197 HESLVGQEIAGRAIR 211
Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 46/95 (48%), Gaps = 7/95 (7%)
Query: 114 EMNGHVIDE-HTIRVDKALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIR 172
E G ++ RVD TK+ IF+G + + + L F CGEI + +
Sbjct: 17 EFEGEAVEPAQKARVDDGSAPTKT----IFVGMLSWNVDNAWLESEFAQCGEIVSAHVQT 72
Query: 173 DQHTNIGKGFGYVNFKAEEEELRKAFESCG-EIDN 206
D++T +GFG+V F A E + KA E G EID
Sbjct: 73 DRNTGRSRGFGFVTF-ASPEAVDKALELNGKEIDG 106
>gi|358379161|gb|EHK16842.1| hypothetical protein TRIVIDRAFT_115017, partial [Trichoderma virens
Gv29-8]
Length = 538
Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 84/171 (49%), Gaps = 20/171 (11%)
Query: 60 PYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRT-NMNAYVRFKNLESVEKAL-EMNG 117
P ++E++RFRSV + ++P++A + + T + NAY F + K + E+NG
Sbjct: 226 PPQKIESLRFRSVAFSTGSMPKRAAYITKALMDATTKSTNAYAVFSTPAAARKVVTELNG 285
Query: 118 HVIDEHTIRVDKALTTTKSNSHS-IFIGNIPFEAEEEEL-RKAFESCGEIDNVRLIRDQH 175
I IRVD + N + +F+GN+ F +E L RKA E ++ D
Sbjct: 286 TEILGRHIRVDSVAHPSPMNHRNCVFVGNLGFVDDETVLNRKADGETVEKKRNKVPSDI- 344
Query: 176 TNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 226
EE L + F + G+++NVR++RD T +GKGF YV F
Sbjct: 345 ---------------EEGLWRTFGTQGKVENVRVVRDSKTRVGKGFAYVQF 380
>gi|342874417|gb|EGU76431.1| hypothetical protein FOXB_13109 [Fusarium oxysporum Fo5176]
Length = 560
Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 77/155 (49%), Gaps = 27/155 (17%)
Query: 60 PYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRT-NMNAYVRFK-NLESVEKALEMNG 117
P +E++RFRSV A +LP++A + + T + NAYV + + + + A E+NG
Sbjct: 245 PPQTIESLRFRSVAFAGGSLPKRAAYITKSLMDATTKSANAYVVYSTSAAARKAAAELNG 304
Query: 118 HVIDEHTIRVDK-ALTTTKSNSHSIFIGNIPFEAEE------------------------ 152
+ E +RVD A + + +F+GN+ F +E
Sbjct: 305 TQVLERHLRVDSVAHPSPTDHRRCVFVGNLGFVDDETVLNTNADGDTTEKKKNKTPSDVE 364
Query: 153 EELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 187
E L + F + G+++NVR++RD T +GKGF YV F
Sbjct: 365 EGLWRTFSTQGKVENVRVVRDSKTRVGKGFAYVQF 399
>gi|397618570|gb|EJK64953.1| hypothetical protein THAOC_14256 [Thalassiosira oceanica]
Length = 210
Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 38/92 (41%), Positives = 54/92 (58%), Gaps = 12/92 (13%)
Query: 105 NLESVEKALEMNGHVIDEHTIRVDKALTTTKSNSHSIFIGNIPFEAEEEELRKAFES--- 161
+L+SV++ALEMN T+RVD A + T S S+F+GN+P+ AEEE LR FE+
Sbjct: 14 SLDSVKEALEMNNTEHGGFTLRVDHA-SPTNDASRSVFVGNLPYAAEEETLRSHFETYLS 72
Query: 162 --------CGEIDNVRLIRDQHTNIGKGFGYV 185
+ +VR+IRD+ T KG GY+
Sbjct: 73 RFDVNERDGSAVSSVRIIRDKDTQQCKGIGYI 104
>gi|157133021|ref|XP_001662743.1| hypothetical protein AaeL_AAEL012618 [Aedes aegypti]
gi|108870976|gb|EAT35201.1| AAEL012618-PA [Aedes aegypti]
Length = 557
Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 49/138 (35%), Positives = 72/138 (52%), Gaps = 15/138 (10%)
Query: 52 SSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEK 111
S++ S+F YG++ T+RFRS ITL +K K K +N Y+RF+ +
Sbjct: 318 STMKSLFNQYGKILTIRFRSN--DGITLFKKKDRKEAKA------LNCYIRFETKPEAQA 369
Query: 112 ALEMNGHVIDEHTIRVDKALTTTKSNSHS-IFIGNIPFEAEEEELRKAFESCGEIDNVRL 170
A MNG +++ + IRV + ++ S +F+GNI + + EL F GEI+ VR
Sbjct: 370 ACAMNGQLVEGNRIRVTMHMQKQMGHASSTVFVGNINRKTTDNELYDFFSRVGEIEYVRQ 429
Query: 171 IRDQHTNIGKGFGYVNFK 188
I D KG GYV FK
Sbjct: 430 IAD------KGIGYVCFK 441
>gi|213401557|ref|XP_002171551.1| gar2 [Schizosaccharomyces japonicus yFS275]
gi|211999598|gb|EEB05258.1| gar2 [Schizosaccharomyces japonicus yFS275]
Length = 449
Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 56/111 (50%), Gaps = 20/111 (18%)
Query: 99 AYVRFKNLESVEKALEMNGHV-IDEHTIRVDKALTTTKSN-------------------S 138
YV F + E+ + A+ +NG ID + +D + N S
Sbjct: 250 GYVDFDSPEAAKAAVAVNGQKEIDGRMVNLDISTPRPAQNNNGFAQQRASNFGDKQSPPS 309
Query: 139 HSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKA 189
++FIGN+ F A E+++R AF SCGEI +VRL D ++ KGFGYV F +
Sbjct: 310 DTVFIGNLSFNATEDDVRNAFSSCGEIQSVRLPTDMNSGRPKGFGYVTFDS 360
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 31/44 (70%)
Query: 183 GYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 226
G ++F A E+++R AF SCGEI +VRL D ++ KGFGYV F
Sbjct: 315 GNLSFNATEDDVRNAFSSCGEIQSVRLPTDMNSGRPKGFGYVTF 358
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 36/63 (57%)
Query: 129 KALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK 188
KA + S ++F+G + + ++E L K FE G + N R+I D + KGFGYV+F
Sbjct: 196 KAAKSESGESCTVFVGRLSWNVDDEWLGKEFEEYGTVVNARVIMDGQSGRSKGFGYVDFD 255
Query: 189 AEE 191
+ E
Sbjct: 256 SPE 258
Score = 40.0 bits (92), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 27/44 (61%)
Query: 183 GYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 226
G +++ ++E L K FE G + N R+I D + KGFGYV+F
Sbjct: 211 GRLSWNVDDEWLGKEFEEYGTVVNARVIMDGQSGRSKGFGYVDF 254
>gi|194740804|ref|XP_001952880.1| GF17498 [Drosophila ananassae]
gi|190625939|gb|EDV41463.1| GF17498 [Drosophila ananassae]
Length = 325
Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 70/141 (49%), Gaps = 18/141 (12%)
Query: 57 MFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMN 116
+F+PYG V+++R R T K K +K ++ ++NAYV + + E AL +N
Sbjct: 76 LFQPYGVVQSIRLR-------TAGGKQLFK-HKQRKEAGSLNAYVVLQTPQIAESALALN 127
Query: 117 GHVIDEHTIRVDKALTTTKSNS---------HSIFIGNIPFEAEEEELRKAFESCGEIDN 167
G ++ +RV A + S +++F+GN+ + E+ L F SCG ID
Sbjct: 128 GFEFKDNHLRVTPAKKVKRDGSEEVNEGDSKNTVFVGNLKYSTNEKMLHDIFSSCGVIDY 187
Query: 168 VRLIRDQHTNIGKGFGYVNFK 188
+R +RD KG YV FK
Sbjct: 188 IRCLRDGEKGC-KGVAYVCFK 207
>gi|301119623|ref|XP_002907539.1| nucleolin, putative [Phytophthora infestans T30-4]
gi|262106051|gb|EEY64103.1| nucleolin, putative [Phytophthora infestans T30-4]
Length = 496
Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 63/123 (51%), Gaps = 6/123 (4%)
Query: 94 RTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKA-----LTTTKSNSHSIFIGNIPF 148
R++ A+V F E+ E AL M+G +++ A S+FIGN+ +
Sbjct: 286 RSSGTAFVTFATSEAAEAALAMDGQDFGGRWMKIRTAEKKNMFDEKPEGCTSVFIGNLSW 345
Query: 149 EAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVR 208
+ +E +R+ F CGEI + RL D+ T +GFG+V+F A E + +A + G N R
Sbjct: 346 DVDENTVRETFGECGEILSCRLATDRETGEFRGFGHVDF-ASTEAVDEAVKLAGSYVNGR 404
Query: 209 LIR 211
IR
Sbjct: 405 AIR 407
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/147 (22%), Positives = 54/147 (36%), Gaps = 48/147 (32%)
Query: 128 DKALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGF----- 182
D A + IFI +P+ A E+E+++ F CGE+ R+ + G F
Sbjct: 238 DAAAVANPQKTLEIFIAGLPWSATEDEVKEHFAGCGEVTGARIPLQNGRSSGTAFVTFAT 297
Query: 183 -------------------------------------------GYVNFKAEEEELRKAFE 199
G +++ +E +R+ F
Sbjct: 298 SEAAEAALAMDGQDFGGRWMKIRTAEKKNMFDEKPEGCTSVFIGNLSWDVDENTVRETFG 357
Query: 200 SCGEIDNVRLIRDQHTNIGKGFGYVNF 226
CGEI + RL D+ T +GFG+V+F
Sbjct: 358 ECGEILSCRLATDRETGEFRGFGHVDF 384
>gi|328850756|gb|EGF99917.1| hypothetical protein MELLADRAFT_118186 [Melampsora larici-populina
98AG31]
Length = 667
Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 44/120 (36%), Positives = 57/120 (47%), Gaps = 28/120 (23%)
Query: 94 RTNMNAYVRFKNLESVEKALE-MNGHVIDEHTIRVD---------------------KAL 131
R+ YV F + E KA+E M G ID TI VD A
Sbjct: 440 RSKGFGYVDFASPEDARKAVEAMAGTEIDGRTINVDFSAPKPERPPQEKRSFGQEELSAP 499
Query: 132 TTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEE 191
TTT +FIGN+PF A ++ + +AF G+I++VRL D T KGFGYV F +E
Sbjct: 500 TTT------LFIGNLPFSATQDSVYEAFSEYGDINSVRLPTDPETERIKGFGYVEFATQE 553
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 43/68 (63%), Gaps = 3/68 (4%)
Query: 141 IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFES 200
+F+G + + +++ L+K FE GE+ + R+I ++ T KGFGYV+F A E+ RKA E+
Sbjct: 403 LFVGGLSWNVDDDWLKKEFEKFGEVISARVITERGTERSKGFGYVDF-ASPEDARKAVEA 461
Query: 201 CG--EIDN 206
EID
Sbjct: 462 MAGTEIDG 469
Score = 41.2 bits (95), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 30/44 (68%)
Query: 183 GYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 226
G +++ +++ L+K FE GE+ + R+I ++ T KGFGYV+F
Sbjct: 406 GGLSWNVDDDWLKKEFEKFGEVISARVITERGTERSKGFGYVDF 449
>gi|148224084|ref|NP_001080489.1| heterogeneous nuclear ribonucleoprotein A/B [Xenopus laevis]
gi|27694771|gb|AAH43814.1| Hnrpab-prov protein [Xenopus laevis]
Length = 324
Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 66/115 (57%), Gaps = 2/115 (1%)
Query: 85 IKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKSNSHSIFIG 144
IKM+ + R+ ++ FK+ ESV+K LE H +D I KA+ K IF+G
Sbjct: 95 IKMDP-NTGRSRGFGFILFKDAESVDKVLEHKEHRLDGRLIDPKKAMAMKKDPIKKIFVG 153
Query: 145 NIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
+ EA E+++R+ FE+ GEI+ + L D TN +GF ++ FK EE+ ++K E
Sbjct: 154 GLNPEAGEDQIREYFETFGEIEAIELPMDPKTNKRRGFVFITFK-EEDPVKKILE 207
Score = 41.6 bits (96), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 29/132 (21%), Positives = 55/132 (41%), Gaps = 45/132 (34%)
Query: 141 IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK------------ 188
+F+G + ++ +++L+ F GE+ + + D +T +GFG++ FK
Sbjct: 66 MFVGGLSWDTSKKDLKDYFAKFGEVSDCTIKMDPNTGRSRGFGFILFKDAESVDKVLEHK 125
Query: 189 ---------------------------------AEEEELRKAFESCGEIDNVRLIRDQHT 215
A E+++R+ FE+ GEI+ + L D T
Sbjct: 126 EHRLDGRLIDPKKAMAMKKDPIKKIFVGGLNPEAGEDQIREYFETFGEIEAIELPMDPKT 185
Query: 216 NIGKGFGYVNFK 227
N +GF ++ FK
Sbjct: 186 NKRRGFVFITFK 197
>gi|281353447|gb|EFB29031.1| hypothetical protein PANDA_013362 [Ailuropoda melanoleuca]
Length = 316
Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 63/115 (54%), Gaps = 2/115 (1%)
Query: 85 IKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKSNSHSIFIG 144
IKM+ + R+ ++ FK+ SVEK L+ H +D I KA+ K IF+G
Sbjct: 85 IKMDP-NTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKKAMAMKKDPVKKIFVG 143
Query: 145 NIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
+ EA EE++R+ F GEI+ + L D +N +GF ++ FK EEE ++K E
Sbjct: 144 GLNPEATEEKIREYFGEFGEIEAIELPMDPKSNKRRGFVFITFK-EEEPVKKVLE 197
>gi|322708946|gb|EFZ00523.1| nucleolar protein 12 [Metarhizium anisopliae ARSEF 23]
Length = 548
Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 57/189 (30%), Positives = 94/189 (49%), Gaps = 24/189 (12%)
Query: 46 SKNHALSSVTSMFKPYG----EVETVRFRSVPVADITLPRKAC-IKMNKVHEKRTNMNAY 100
+K L+ ++S+ P+G ++E++RFRSV + ++P++A I + + + NAY
Sbjct: 223 AKKTLLTHLSSVLDPHGMPVQKLESIRFRSVAFSTGSMPKRAAYITKSLMGATTKSTNAY 282
Query: 101 VRFKNLESVE-KALEMNG-HVIDEHTIRVDK-ALTTTKSNSHSIFIGNIPFEAEEEELRK 157
F + A ++NG V+ H IRVD A + + IF+GN+ F +E
Sbjct: 283 AVFSTPAAARLVASKLNGTEVLGRH-IRVDSVAHPSPTDHRRCIFVGNLGFVDDE----T 337
Query: 158 AFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNI 217
+ E +NV R T + EE L + F G+++NVR++RD T +
Sbjct: 338 VVNTTKEGENVEKKR---TKVPSDI--------EEGLWRTFSKTGKVENVRVVRDPTTRV 386
Query: 218 GKGFGYVNF 226
GKGF YV F
Sbjct: 387 GKGFAYVQF 395
>gi|91086169|ref|XP_970456.1| PREDICTED: similar to TIA-1 homolog [Tribolium castaneum]
gi|270010230|gb|EFA06678.1| hypothetical protein TcasGA2_TC009608 [Tribolium castaneum]
Length = 364
Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 49/141 (34%), Positives = 70/141 (49%), Gaps = 14/141 (9%)
Query: 80 PRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALE-MNGHVIDEHTIRVDKALTTTK--- 135
P K C + E + A+V F N +S AL MN + + ++V+ A +
Sbjct: 33 PVKGC---KIIREPGNDPYAFVEFTNHQSASTALAAMNKRLFLDKEMKVNWATSPGNQPK 89
Query: 136 ---SNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF--KAE 190
SN H IF+G++ E E E LR+AF GEI N R++RD T KG+ +V+F KAE
Sbjct: 90 QDTSNHHHIFVGDLSPEIETETLREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAE 149
Query: 191 EEELRKAFESCGEIDNVRLIR 211
E +A G+ R IR
Sbjct: 150 AENAIQAMN--GQWLGSRSIR 168
>gi|408400703|gb|EKJ79780.1| hypothetical protein FPSE_00060 [Fusarium pseudograminearum CS3096]
Length = 555
Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 78/156 (50%), Gaps = 29/156 (18%)
Query: 60 PYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRT-NMNAYVRF-KNLESVEKALEMNG 117
P +E++RFRSV A +LP++A + + T + NAYV + + A ++NG
Sbjct: 242 PPQTIESLRFRSVAFAGGSLPKRAAYITKSLMDSTTKSANAYVVYSTTAAARTAATKLNG 301
Query: 118 -HVIDEHTIRVDK-ALTTTKSNSHSIFIGNIPF---------EAE--------------- 151
V+D H +RVD A + + +F+GN+ F AE
Sbjct: 302 TQVLDRH-LRVDSVAHPSPTDHRRCVFVGNLGFVDDETVLNTNAEGDTTEKKKNKTPSDI 360
Query: 152 EEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 187
EE L + F + G+++NVR++RD T +GKGF YV F
Sbjct: 361 EEGLWRTFSTQGKVENVRVVRDSKTRVGKGFAYVQF 396
>gi|19173032|ref|NP_597583.1| NUCLEOLAR PROTEIN OF THE GAR FAMILY [Encephalitozoon cuniculi
GB-M1]
gi|449329681|gb|AGE95951.1| nucleolar protein of the gar family [Encephalitozoon cuniculi]
Length = 293
Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 62/114 (54%), Gaps = 1/114 (0%)
Query: 82 KACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKSNSHSI 141
+ I M H KR YV F E V+KAL+++G V + V+ A H+I
Sbjct: 115 RVGIPMTNDH-KRNKGFGYVEFCKEEDVKKALKLDGTVFLGREVVVNMAHPRANKERHTI 173
Query: 142 FIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELR 195
++ NIP+E ++ +L+K FE GE+ + L D+ N KG+G+V+F +E+ R
Sbjct: 174 YVSNIPYECDKRDLKKYFEGMGEVVGMSLPYDRDNNRLKGYGFVDFGNKEDYER 227
Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 37/159 (23%), Positives = 60/159 (37%), Gaps = 45/159 (28%)
Query: 113 LEMNGHVIDEHTIRVDKALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIR 172
LE + I+E T + ++ S ++FI I ++ E +L+ E G++ V +
Sbjct: 61 LEGSSTEIEEETSSGSGEESRRENPSLTVFIKGISYDLTEYDLKSEMEKIGKVARVGIPM 120
Query: 173 DQHTNIGKGFGYVNFKAEEE---------------------------------------- 192
KGFGYV F EE+
Sbjct: 121 TNDHKRNKGFGYVEFCKEEDVKKALKLDGTVFLGREVVVNMAHPRANKERHTIYVSNIPY 180
Query: 193 -----ELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 226
+L+K FE GE+ + L D+ N KG+G+V+F
Sbjct: 181 ECDKRDLKKYFEGMGEVVGMSLPYDRDNNRLKGYGFVDF 219
>gi|353241625|emb|CCA73428.1| related to NSR1-nuclear localization sequence binding protein
[Piriformospora indica DSM 11827]
Length = 657
Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 49/147 (33%), Positives = 72/147 (48%), Gaps = 21/147 (14%)
Query: 82 KACIKMNKVHEKRTNMNAYVRFKNLESVEKAL-EMNGHVIDEHTIRVDKALT-------- 132
+A ++M++ R+ YV F E+ EKA+ EMNG ID + V+ A
Sbjct: 419 RASVQMDR-QTGRSKGFGYVSFSTPEAAEKAIAEMNGKEIDGRAVNVNAATPKTPNPAGR 477
Query: 133 ------TTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVN 186
T + S +F+GN+ F A E+ L + F G+I +VRL D+ T KGFGYV
Sbjct: 478 AKQFGDTVSAESKVLFVGNVSFNANEDMLWETFGEHGDIVSVRLPTDRETGQMKGFGYVE 537
Query: 187 FKAEEEELRKAFESCGEID----NVRL 209
F + E + AF + D N+RL
Sbjct: 538 FTS-VENAKSAFNALNGKDIAGRNIRL 563
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 141 IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFES 200
IF+G + + ++E L+ FE+CGE+ + D+ T KGFGYV+F E + E
Sbjct: 393 IFVGKLSWNVDDEWLKSEFEACGEVVRASVQMDRQTGRSKGFGYVSFSTPEAAEKAIAEM 452
Query: 201 CG-EIDN 206
G EID
Sbjct: 453 NGKEIDG 459
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 28/44 (63%)
Query: 183 GYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 226
G +++ ++E L+ FE+CGE+ + D+ T KGFGYV+F
Sbjct: 396 GKLSWNVDDEWLKSEFEACGEVVRASVQMDRQTGRSKGFGYVSF 439
>gi|46105869|ref|XP_380574.1| hypothetical protein FG00398.1 [Gibberella zeae PH-1]
gi|83288330|sp|Q4IQW0.1|NOP12_GIBZE RecName: Full=Nucleolar protein 12
Length = 559
Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 78/156 (50%), Gaps = 29/156 (18%)
Query: 60 PYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRT-NMNAYVRF-KNLESVEKALEMNG 117
P +E++RFRSV A +LP++A + + T + NAYV + + A ++NG
Sbjct: 246 PPQTIESLRFRSVAFAGGSLPKRAAYITKSLMDSTTKSANAYVVYSTTAAARTAATKLNG 305
Query: 118 -HVIDEHTIRVDK-ALTTTKSNSHSIFIGNIPF---------EAE--------------- 151
V+D H +RVD A + + +F+GN+ F AE
Sbjct: 306 TQVLDRH-LRVDSVAHPSPTDHRRCVFVGNLGFVDDETVLNTNAEGDTTEKKKNKTPSDI 364
Query: 152 EEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 187
EE L + F + G+++NVR++RD T +GKGF YV F
Sbjct: 365 EEGLWRTFSTQGKVENVRVVRDSKTRVGKGFAYVQF 400
>gi|345777448|ref|XP_003431598.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A/B [Canis lupus
familiaris]
Length = 353
Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 63/115 (54%), Gaps = 2/115 (1%)
Query: 85 IKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKSNSHSIFIG 144
IKM+ + R+ ++ FK+ SVEK L+ H +D I KA+ K IF+G
Sbjct: 151 IKMDP-NTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKKAMAMKKDPVKKIFVG 209
Query: 145 NIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
+ EA EE++R+ F GEI+ + L D +N +GF ++ FK EEE ++K E
Sbjct: 210 GLNPEATEEKIREYFGEFGEIEAIELPMDPKSNKRRGFVFITFK-EEEPVKKVLE 263
>gi|402078039|gb|EJT73388.1| nuclear localization sequence binding protein [Gaeumannomyces
graminis var. tritici R3-111a-1]
Length = 499
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 67/137 (48%), Gaps = 21/137 (15%)
Query: 94 RTNMNAYVRFKNLESVEKA-LEMNGHVIDEHTIRVDKALTTTKSN--------------- 137
R+ YV F + EKA E G ID I+VD +T KSN
Sbjct: 292 RSKGFGYVDFASPADAEKAHAEKQGAFIDGRQIKVD--FSTGKSNNNDSADRAKKFGDVT 349
Query: 138 ---SHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEEL 194
S ++F+GN+PF+A+E+ + + F S EI ++RL DQ + KGFGYV+F + E+
Sbjct: 350 SPESDTLFVGNLPFDADEDVVSEFFGSVAEIKSLRLPTDQESGRRKGFGYVSFNSVEDAK 409
Query: 195 RKAFESCGEIDNVRLIR 211
+ G+ N R R
Sbjct: 410 SAFTQLSGQSINGRPCR 426
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 44/72 (61%)
Query: 140 SIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
++F+G++ + +++ L++ F+ CGE+ + R+I D+ T KGFGYV+F + + + E
Sbjct: 254 TLFVGSLSWNVDDDMLKEEFKFCGEVVSARVITDRETGRSKGFGYVDFASPADAEKAHAE 313
Query: 200 SCGEIDNVRLIR 211
G + R I+
Sbjct: 314 KQGAFIDGRQIK 325
Score = 43.5 bits (101), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 31/44 (70%)
Query: 183 GYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 226
G +++ +++ L++ F+ CGE+ + R+I D+ T KGFGYV+F
Sbjct: 258 GSLSWNVDDDMLKEEFKFCGEVVSARVITDRETGRSKGFGYVDF 301
>gi|344247222|gb|EGW03326.1| RNA-binding protein 34 [Cricetulus griseus]
Length = 285
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/82 (46%), Positives = 52/82 (63%), Gaps = 1/82 (1%)
Query: 54 VTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKAL 113
+ S+FK YG++E+VRFRSV A+ TL +K K H + ++NAYV FK+ + KAL
Sbjct: 199 LKSLFKEYGQIESVRFRSVMPAEGTLTKKLAAIKRKFHPDQKSINAYVVFKDESAATKAL 258
Query: 114 EMNGHVIDEH-TIRVDKALTTT 134
+ NG I+E IRVD A TT
Sbjct: 259 QRNGAQIEEGFRIRVDLASETT 280
>gi|378733246|gb|EHY59705.1| hypothetical protein HMPREF1120_07688 [Exophiala dermatitidis
NIH/UT8656]
Length = 392
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 59/198 (29%), Positives = 97/198 (48%), Gaps = 30/198 (15%)
Query: 22 SKLKVFL-NIWKMALKLKMNPS-LTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITL 79
SK VFL N+ A+KLK L++ AL + + G++E++RFRS
Sbjct: 83 SKRTVFLGNVSTDAIKLKRAKKILSRHLRSALKTPAQGPR-LGKLESLRFRSTAYHSDAG 141
Query: 80 PRKACIKMNKVHEKRT-NMNAYVRFKNLESVEK-ALEMNGHVIDEHTIRVDKALTTTK-S 136
P+KA ++ ++ T + NAY F E+ + A ++NG V+ + +RVD +
Sbjct: 142 PKKATFAKKELMDETTPSTNAYAVFTTEEAAKHVAKKLNGSVVLDRHLRVDYMGKPAEID 201
Query: 137 NSHSIFIGNIPF------------EAE------------EEELRKAFESCGEIDNVRLIR 172
+ IF+GN+ F EA+ EE L + F G++++VR++R
Sbjct: 202 HRRCIFVGNLSFVSKETAGNDEDDEAKRRRAAAKEPADPEEGLWRTFSKVGKVESVRVVR 261
Query: 173 DQHTNIGKGFGYVNFKAE 190
DQ T + KG YV F++E
Sbjct: 262 DQETRVSKGIAYVQFESE 279
>gi|5052976|gb|AAD38787.1|AF153444_1 hnRNP A/B related protein, partial [Felis catus]
Length = 279
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 58/106 (54%), Gaps = 1/106 (0%)
Query: 94 RTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKSNSHSIFIGNIPFEAEEE 153
R+ ++ FK+ SVEK L+ H +D I KA+ K IF+G + EA EE
Sbjct: 103 RSKGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKKAMAMKKDPVKKIFVGGLNPEATEE 162
Query: 154 ELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
++R+ F GEI+ + L D TN +GF ++ FK EEE ++K E
Sbjct: 163 KIREYFGEFGEIEAIELPMDPKTNKRRGFVFITFK-EEEPVKKVLE 207
>gi|143346991|gb|ABO93208.1| Elav [Platynereis dumerilii]
Length = 361
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 67/144 (46%), Gaps = 11/144 (7%)
Query: 54 VTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKAL 113
+ S+F GEVE+ + D + +C + +V +K E EKA+
Sbjct: 58 IRSLFSSIGEVESCKLIRDKATDQSSGTSSCQSLGY---------GFVNYKRPEDAEKAI 108
Query: 114 E-MNGHVIDEHTIRVDKALTTTKS-NSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLI 171
+NG + TI+V A +++S ++++ +P E ELR F SCG I N R++
Sbjct: 109 NTLNGLRLQNKTIKVSYARPSSESIKGANLYLSGLPKSMSEPELRSLFSSCGSIINCRIL 168
Query: 172 RDQHTNIGKGFGYVNFKAEEEELR 195
D T + KG G++ F E R
Sbjct: 169 CDNTTGLSKGVGFIRFDQRVEAER 192
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 55/141 (39%), Gaps = 55/141 (39%)
Query: 141 IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGK--------GFGYVNFKAEEE 192
+ + +P +EE+R F S GE+++ +LIRD+ T+ G+G+VN+K E+
Sbjct: 44 LIVNYLPQTMTQEEIRSLFSSIGEVESCKLIRDKATDQSSGTSSCQSLGYGFVNYKRPED 103
Query: 193 -----------------------------------------------ELRKAFESCGEID 205
ELR F SCG I
Sbjct: 104 AEKAINTLNGLRLQNKTIKVSYARPSSESIKGANLYLSGLPKSMSEPELRSLFSSCGSII 163
Query: 206 NVRLIRDQHTNIGKGFGYVNF 226
N R++ D T + KG G++ F
Sbjct: 164 NCRILCDNTTGLSKGVGFIRF 184
Score = 40.4 bits (93), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 30/54 (55%)
Query: 141 IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEEL 194
IF+ N+ E EE L + F G + +V++IRD T KGFG+V +E L
Sbjct: 281 IFVYNLAPETEENVLWQLFGPFGAVQSVKVIRDFQTQKCKGFGFVTMTNYDEAL 334
Score = 38.1 bits (87), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 8/52 (15%)
Query: 184 YVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGK--------GFGYVNFK 227
Y+ +EE+R F S GE+++ +LIRD+ T+ G+G+VN+K
Sbjct: 48 YLPQTMTQEEIRSLFSSIGEVESCKLIRDKATDQSSGTSSCQSLGYGFVNYK 99
>gi|440898381|gb|ELR49895.1| Heterogeneous nuclear ribonucleoprotein A/B, partial [Bos grunniens
mutus]
Length = 262
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 58/106 (54%), Gaps = 1/106 (0%)
Query: 94 RTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKSNSHSIFIGNIPFEAEEE 153
R+ ++ FK+ SVEK L+ H +D I KA+ K IF+G + EA EE
Sbjct: 39 RSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKKAMAMKKDPVKKIFVGGLNPEATEE 98
Query: 154 ELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
++R+ F GEI+ + L D +N +GF ++ FK EEE ++K E
Sbjct: 99 KIREYFGEFGEIEAIELPMDPKSNKRRGFVFITFK-EEEPVKKVLE 143
>gi|392512575|emb|CAD26218.2| NUCLEOLAR PROTEIN OF THE GAR FAMILY [Encephalitozoon cuniculi
GB-M1]
Length = 270
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 62/114 (54%), Gaps = 1/114 (0%)
Query: 82 KACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKSNSHSI 141
+ I M H KR YV F E V+KAL+++G V + V+ A H+I
Sbjct: 92 RVGIPMTNDH-KRNKGFGYVEFCKEEDVKKALKLDGTVFLGREVVVNMAHPRANKERHTI 150
Query: 142 FIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELR 195
++ NIP+E ++ +L+K FE GE+ + L D+ N KG+G+V+F +E+ R
Sbjct: 151 YVSNIPYECDKRDLKKYFEGMGEVVGMSLPYDRDNNRLKGYGFVDFGNKEDYER 204
Score = 38.5 bits (88), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 37/159 (23%), Positives = 60/159 (37%), Gaps = 45/159 (28%)
Query: 113 LEMNGHVIDEHTIRVDKALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIR 172
LE + I+E T + ++ S ++FI I ++ E +L+ E G++ V +
Sbjct: 38 LEGSSTEIEEETSSGSGEESRRENPSLTVFIKGISYDLTEYDLKSEMEKIGKVARVGIPM 97
Query: 173 DQHTNIGKGFGYVNFKAEEE---------------------------------------- 192
KGFGYV F EE+
Sbjct: 98 TNDHKRNKGFGYVEFCKEEDVKKALKLDGTVFLGREVVVNMAHPRANKERHTIYVSNIPY 157
Query: 193 -----ELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 226
+L+K FE GE+ + L D+ N KG+G+V+F
Sbjct: 158 ECDKRDLKKYFEGMGEVVGMSLPYDRDNNRLKGYGFVDF 196
>gi|301777376|ref|XP_002924104.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A/B-like
[Ailuropoda melanoleuca]
Length = 261
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 58/106 (54%), Gaps = 1/106 (0%)
Query: 94 RTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKSNSHSIFIGNIPFEAEEE 153
R+ ++ FK+ SVEK L+ H +D I KA+ K IF+G + EA EE
Sbjct: 38 RSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKKAMAMKKDPVKKIFVGGLNPEATEE 97
Query: 154 ELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
++R+ F GEI+ + L D +N +GF ++ FK EEE ++K E
Sbjct: 98 KIREYFGEFGEIEAIELPMDPKSNKRRGFVFITFK-EEEPVKKVLE 142
>gi|113931574|ref|NP_001039236.1| heterogeneous nuclear ribonucleoprotein A/B [Xenopus (Silurana)
tropicalis]
gi|89272441|emb|CAJ82657.1| heterogeneous nuclear ribonucleoprotein A/B [Xenopus (Silurana)
tropicalis]
Length = 313
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 65/115 (56%), Gaps = 2/115 (1%)
Query: 85 IKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKSNSHSIFIG 144
IKM+ + R+ ++ FK+ SV+K LE H +D I KA+ K IF+G
Sbjct: 83 IKMD-PNTGRSRGFGFILFKDAASVDKVLEQKEHRLDGRLIDPKKAMAMKKDPIKKIFVG 141
Query: 145 NIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
+ EA E+++R+ FE+ GEI+ + L D TN +GF ++ FK EEE ++K E
Sbjct: 142 GLNPEAGEDKIREYFETFGEIEAIELPMDPKTNKRRGFVFITFK-EEEPVKKILE 195
Score = 41.6 bits (96), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 29/141 (20%), Positives = 59/141 (41%), Gaps = 45/141 (31%)
Query: 132 TTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK--- 188
+ + ++ +F+G + ++ +++L+ F GE+ + + D +T +GFG++ FK
Sbjct: 45 SKGEEDAGKMFVGGLSWDTSKKDLKDYFSKFGEVSDCTIKMDPNTGRSRGFGFILFKDAA 104
Query: 189 ------------------------------------------AEEEELRKAFESCGEIDN 206
A E+++R+ FE+ GEI+
Sbjct: 105 SVDKVLEQKEHRLDGRLIDPKKAMAMKKDPIKKIFVGGLNPEAGEDKIREYFETFGEIEA 164
Query: 207 VRLIRDQHTNIGKGFGYVNFK 227
+ L D TN +GF ++ FK
Sbjct: 165 IELPMDPKTNKRRGFVFITFK 185
>gi|396472606|ref|XP_003839165.1| similar to nucleolar protein 12 [Leptosphaeria maculans JN3]
gi|312215734|emb|CBX95686.1| similar to nucleolar protein 12 [Leptosphaeria maculans JN3]
Length = 555
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 75/150 (50%), Gaps = 23/150 (15%)
Query: 60 PYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRT-NMNAYVRFKNLESVEKALE-MNG 117
P ++E++RFRS A +LP++A ++ + T + NAY + + +A++ +NG
Sbjct: 274 PPHKIESIRFRSTAFAS-SLPKRAAFAKKEIMDSTTKSTNAYAVYTTKVAAREAVKRLNG 332
Query: 118 HVIDEHTIRVDKALTTTK-SNSHSIFIGNIPFEAE-------------------EEELRK 157
++ + + VD K + +F+GN+PF + EE L
Sbjct: 333 TLLLDRHLHVDSVAHPAKVDHRRCVFVGNLPFVDDREPASTDEKPKKPRPSSDVEEGLWV 392
Query: 158 AFESCGEIDNVRLIRDQHTNIGKGFGYVNF 187
F G+I++VR++RD T IGKGF YV F
Sbjct: 393 HFAKAGKIESVRVVRDAQTRIGKGFAYVQF 422
>gi|194742700|ref|XP_001953839.1| GF17967 [Drosophila ananassae]
gi|190626876|gb|EDV42400.1| GF17967 [Drosophila ananassae]
Length = 471
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 67/131 (51%), Gaps = 11/131 (8%)
Query: 90 VHEKRTNMNAYVRFKNLESVEKAL-EMNGHVIDEHTIRVDKALT------TTKSNSHSIF 142
+ E + A++ + ++ AL MN + + I+V+ A + T S+ H IF
Sbjct: 39 IREPGNDPYAFIEYSTYQAATTALTAMNKRLFLDKEIKVNWATSPGNQPKTDISSHHHIF 98
Query: 143 IGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF--KAEEEELRKAFES 200
+G++ E E E LR+AF GEI N R++RD HT KG+ +V+F KAE E A
Sbjct: 99 VGDLSPEIETETLREAFAPFGEISNCRIVRDPHTMKSKGYAFVSFVKKAEAENAITAMN- 157
Query: 201 CGEIDNVRLIR 211
G+ R IR
Sbjct: 158 -GQWIGSRSIR 167
Score = 45.4 bits (106), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 25/37 (67%)
Query: 190 EEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 226
E E LR+AF GEI N R++RD HT KG+ +V+F
Sbjct: 107 ETETLREAFAPFGEISNCRIVRDPHTMKSKGYAFVSF 143
>gi|402225922|gb|EJU05982.1| RNA-binding domain-containing protein [Dacryopinax sp. DJM-731 SS1]
Length = 541
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 61/125 (48%), Gaps = 16/125 (12%)
Query: 94 RTNMNAYVRFKNLESVEKALE-MNGHVIDEHTIRVDKALT--------------TTKSNS 138
R+ ++ F ++V KALE M G +D I VDK + T S
Sbjct: 327 RSRGFGFIDFSTSDAVAKALETMQGKEVDGRAIAVDKTESNPRNTQARAAKFGDTPSEPS 386
Query: 139 HSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAF 198
+IF+GN+ F A+E+ L + F G + +VRL D+ T KGF YV F+ ++ AF
Sbjct: 387 QTIFVGNVAFSADEDALWQTFADYGAVRSVRLPTDRETGQPKGFAYVEFE-DQAGATAAF 445
Query: 199 ESCGE 203
E+ E
Sbjct: 446 EAGKE 450
Score = 44.7 bits (104), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 138 SHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKA 197
S +I + N+ + +++ L+ FE CGEI +VR+ D+ + +GFG+++F + + + KA
Sbjct: 287 SKTIIVKNLSWNVDDDWLKTEFEECGEIVSVRVQLDRQSGRSRGFGFIDF-STSDAVAKA 345
Query: 198 FES 200
E+
Sbjct: 346 LET 348
Score = 40.0 bits (92), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 30/45 (66%)
Query: 185 VNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKVS 229
+++ +++ L+ FE CGEI +VR+ D+ + +GFG+++F S
Sbjct: 295 LSWNVDDDWLKTEFEECGEIVSVRVQLDRQSGRSRGFGFIDFSTS 339
>gi|302506797|ref|XP_003015355.1| RNA binding protein, putative [Arthroderma benhamiae CBS 112371]
gi|291178927|gb|EFE34715.1| RNA binding protein, putative [Arthroderma benhamiae CBS 112371]
Length = 552
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 84/171 (49%), Gaps = 22/171 (12%)
Query: 63 EVETVRFRSVPVADITLPRKACIKMNKVHEKRT-NMNAYVRFKNLESVEKALEMNGHVID 121
++E++RFRS + LPR+A ++ + T NAYV + + +KAL++NG ++
Sbjct: 243 KIESLRFRSTAFSSTALPRRAAYAKKELMDSTTKGTNAYVVYSTALAAKKALKLNGTIVL 302
Query: 122 EHTIRVDKALTTTK-SNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGK 180
+ IRVD ++ +F+GN+ F EE + DQ + K
Sbjct: 303 DRHIRVDSVSKPAPVDHTRCVFVGNLGFVDEEAQ----------------PADQDGEVKK 346
Query: 181 GFGYVNFKAEEEELRKAF-ESCGE---IDNVRLIRDQHTNIGKGFGYVNFK 227
EE L + F + CG +++VR++RD+ T +GKGF YV FK
Sbjct: 347 KKKAAAAADVEEGLWRTFNDQCGGEGVVESVRVVRDRLTRVGKGFAYVQFK 397
>gi|195997575|ref|XP_002108656.1| hypothetical protein TRIADDRAFT_5340 [Trichoplax adhaerens]
gi|190589432|gb|EDV29454.1| hypothetical protein TRIADDRAFT_5340, partial [Trichoplax
adhaerens]
Length = 172
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 58/108 (53%)
Query: 84 CIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKSNSHSIFI 143
CI + KR+ ++ ++N+ ++KAL HVID + +++ ++ + IFI
Sbjct: 32 CIILRDPVTKRSRGFGFIIYRNVSDIDKALLHATHVIDGKQVEPKRSVPREQTRTKKIFI 91
Query: 144 GNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEE 191
G +P +E+L+ F G + V L+RD+ T +GFG+V+F E
Sbjct: 92 GGLPPNTSDEDLKIYFGKYGVVSEVELLRDKETGRLRGFGFVSFDTPE 139
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/144 (22%), Positives = 57/144 (39%), Gaps = 45/144 (31%)
Query: 141 IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK------------ 188
+F+G + +E EE R+ FE GE+ N ++RD T +GFG++ ++
Sbjct: 5 LFVGGLSWETTEERFREHFEKFGEVVNCIILRDPVTKRSRGFGFIIYRNVSDIDKALLHA 64
Query: 189 ---------------------------------AEEEELRKAFESCGEIDNVRLIRDQHT 215
+E+L+ F G + V L+RD+ T
Sbjct: 65 THVIDGKQVEPKRSVPREQTRTKKIFIGGLPPNTSDEDLKIYFGKYGVVSEVELLRDKET 124
Query: 216 NIGKGFGYVNFKVSFTTLSSIFSK 239
+GFG+V+F ++ +K
Sbjct: 125 GRLRGFGFVSFDTPEGAQKALVTK 148
>gi|322699077|gb|EFY90842.1| nucleolar protein 12 [Metarhizium acridum CQMa 102]
Length = 548
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 94/193 (48%), Gaps = 22/193 (11%)
Query: 46 SKNHALSSVTSMFKPYG----EVETVRFRSVPVADITLPRKAC-IKMNKVHEKRTNMNAY 100
+K L+ ++S+ P G ++E++RFRSV + ++P++A I + + + NAY
Sbjct: 223 AKKALLTHLSSVLDPQGMPAQKLESIRFRSVAFSTGSMPKRAAYITKSLMGATTKSANAY 282
Query: 101 VRFKNLESVE-KALEMNGHVIDEHTIRVDK-ALTTTKSNSHSIFIGNIPFEAEEEELRKA 158
F + A ++NG I IRVD A + + IF+GN+ F ++E +
Sbjct: 283 AVFSTPAAARLVASKLNGTEILGRHIRVDSVAHPSPTDHRRCIFVGNLGF-VDDETVVNT 341
Query: 159 FESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIG 218
E ++ R T + EE L + F G+++NVR++RD T +G
Sbjct: 342 NEGGENVEKKR------TKVPSDI--------EEGLWRTFSKTGKVENVRVVRDPKTRVG 387
Query: 219 KGFGYVNFKVSFT 231
KGF YV F ++ T
Sbjct: 388 KGFAYVQFYLTQT 400
>gi|321249350|ref|XP_003191429.1| single-stranded DNA binding protein [Cryptococcus gattii WM276]
gi|317457896|gb|ADV19642.1| single-stranded DNA binding protein, putative [Cryptococcus gattii
WM276]
Length = 442
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 59/111 (53%), Gaps = 18/111 (16%)
Query: 99 AYVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKSN-----------------SHSI 141
YV F +LE+ KA+E +G ID IRV+ A T K N + ++
Sbjct: 238 GYVEFADLEASAKAIEKDGSEIDGRAIRVNYA-TQRKPNEAAEKRAKVFNDKQSPPAETL 296
Query: 142 FIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEE 192
+IG++ F E+++ +AF G++ +VRL D+ T KGFGYV F + E+
Sbjct: 297 WIGSLSFSVTEDQVYEAFGQHGDVQSVRLPTDRDTGAPKGFGYVQFSSVED 347
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 44/72 (61%), Gaps = 3/72 (4%)
Query: 141 IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFES 200
+F+G + + + + L+ FESCGE+ + R++ D+ + +GFGYV F A+ E KA E
Sbjct: 196 VFVGQLSWNVDNDWLKSEFESCGEVVSARVVFDRDSQKSRGFGYVEF-ADLEASAKAIEK 254
Query: 201 CG-EIDNVRLIR 211
G EID R IR
Sbjct: 255 DGSEIDG-RAIR 265
Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 29/44 (65%)
Query: 183 GYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 226
G +++ + + L+ FESCGE+ + R++ D+ + +GFGYV F
Sbjct: 199 GQLSWNVDNDWLKSEFESCGEVVSARVVFDRDSQKSRGFGYVEF 242
>gi|303388667|ref|XP_003072567.1| splicing factor CC1-like protein [Encephalitozoon intestinalis ATCC
50506]
gi|303301708|gb|ADM11207.1| splicing factor CC1-like protein [Encephalitozoon intestinalis ATCC
50506]
Length = 295
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 58/100 (58%)
Query: 93 KRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKSNSHSIFIGNIPFEAEE 152
KR YV F E V+KAL+++G V + V+ A T H+I+I N+PFE ++
Sbjct: 126 KRNKGFGYVEFCKEEDVKKALKLDGTVFLGREVIVNMAHPRTNKEKHTIYISNLPFECDK 185
Query: 153 EELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEE 192
++L+K FE GE+ + D+ + KG+G+V+F +E+
Sbjct: 186 KKLKKYFEEMGEVVGMSFPYDKENDRLKGYGFVDFGNKED 225
>gi|242799056|ref|XP_002483297.1| RNA binding protein, putative [Talaromyces stipitatus ATCC 10500]
gi|218716642|gb|EED16063.1| RNA binding protein, putative [Talaromyces stipitatus ATCC 10500]
Length = 536
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 89/181 (49%), Gaps = 13/181 (7%)
Query: 51 LSSVTSMFKPYGEVETVRFRSVPVA-DITLPRKACIKMNKVHEKRT-NMNAYVRFKNLES 108
L S+ P+ ++E++RFRS +PR+A + + T + NAYV F +
Sbjct: 233 LPSLPKSHTPH-KIESIRFRSTAYGTQQGVPRRAAYAHKETMDSTTLSTNAYVVFSTSIA 291
Query: 109 VEKAL-EMNGHVIDEHTIRVDK-ALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEID 166
+KA +NG V+ +RVD A N +F+GN+ F +E + G+ +
Sbjct: 292 AQKAPGALNGTVVLGRHLRVDNIAHPAAIDNKRCVFVGNLDFVGQENDAE------GDEE 345
Query: 167 NVRLIRD-QHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVN 225
N + ++ ++ +G + F A K + G +++VR++RDQ T +GKGF YV
Sbjct: 346 NPKKKKNTPPADVEEGL-WRTFNANTGVAEKKNAAGGNVESVRVVRDQATRVGKGFAYVQ 404
Query: 226 F 226
F
Sbjct: 405 F 405
>gi|401825695|ref|XP_003886942.1| RNA binding domain-containing protein [Encephalitozoon hellem ATCC
50504]
gi|392998099|gb|AFM97961.1| RNA binding domain-containing protein [Encephalitozoon hellem ATCC
50504]
Length = 274
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 56/100 (56%)
Query: 93 KRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKSNSHSIFIGNIPFEAEE 152
KR YV F E V+KAL+++G V + V+ A H+I+I NIPFE ++
Sbjct: 105 KRNKGFGYVEFSKEEDVKKALKLDGTVFLGREVVVNMAHPRENKQRHTIYISNIPFECDK 164
Query: 153 EELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEE 192
+L+K FE GE+ + D+ + KG+G+V+F +E+
Sbjct: 165 RKLKKYFEEMGEVVGMSFPYDKENDRLKGYGFVDFGNKED 204
>gi|449540824|gb|EMD31812.1| hypothetical protein CERSUDRAFT_88684 [Ceriporiopsis subvermispora
B]
Length = 292
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 60/119 (50%), Gaps = 17/119 (14%)
Query: 99 AYVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKSN----------------SHSIF 142
YV F +E+V+ A+ NG ID + +DK++ K S +F
Sbjct: 88 GYVTFATVEAVDAAIAQNGKEIDGRAVNIDKSIEKDKGAVRQKRAEAYGDKASEPSSVLF 147
Query: 143 IGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESC 201
+GN+ ++A E+ L + F G+I +VR+ D+ T KGF YV F ++ E +KAFE
Sbjct: 148 VGNLSWDATEDTLWETFNEYGDIKSVRVPTDRETGKPKGFAYVEF-SDIEASKKAFEGA 205
Score = 43.9 bits (102), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 38/69 (55%), Gaps = 4/69 (5%)
Query: 119 VIDEHTIRVDKALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNI 178
+ D + ++A TK+ IF+G + + + + L + F CGE+ + R+ D++T
Sbjct: 28 LADGNAAPAEEASDATKT----IFVGKLSWNVDNDWLAQEFAECGEVVSARVQMDRNTGK 83
Query: 179 GKGFGYVNF 187
+GFGYV F
Sbjct: 84 SRGFGYVTF 92
Score = 37.4 bits (85), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 27/44 (61%)
Query: 183 GYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 226
G +++ + + L + F CGE+ + R+ D++T +GFGYV F
Sbjct: 49 GKLSWNVDNDWLAQEFAECGEVVSARVQMDRNTGKSRGFGYVTF 92
>gi|326928651|ref|XP_003210489.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A/B-like
[Meleagris gallopavo]
gi|449474690|ref|XP_004175898.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A/B [Taeniopygia
guttata]
gi|449474694|ref|XP_002196057.2| PREDICTED: heterogeneous nuclear ribonucleoprotein A/B [Taeniopygia
guttata]
Length = 262
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 62/115 (53%), Gaps = 2/115 (1%)
Query: 85 IKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKSNSHSIFIG 144
IKM+ + R+ ++ FK SVEK LE H +D I KA+ K IF+G
Sbjct: 30 IKMDP-NTGRSRGFGFILFKEPGSVEKVLEQKEHRLDGRLIDPKKAMAMKKDPVKKIFVG 88
Query: 145 NIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
+ EA EE++R+ F GEI+ + L D TN +GF ++ FK EE+ ++K E
Sbjct: 89 GLNPEATEEKIREYFGEFGEIEAIELPMDPKTNKRRGFVFITFK-EEDPVKKVLE 142
Score = 40.0 bits (92), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 29/132 (21%), Positives = 53/132 (40%), Gaps = 45/132 (34%)
Query: 141 IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK------------ 188
+F+G + ++ +++L+ F GE+ + + D +T +GFG++ FK
Sbjct: 1 MFVGGLSWDTSKKDLKDYFTKFGEVTDCTIKMDPNTGRSRGFGFILFKEPGSVEKVLEQK 60
Query: 189 ---------------------------------AEEEELRKAFESCGEIDNVRLIRDQHT 215
A EE++R+ F GEI+ + L D T
Sbjct: 61 EHRLDGRLIDPKKAMAMKKDPVKKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKT 120
Query: 216 NIGKGFGYVNFK 227
N +GF ++ FK
Sbjct: 121 NKRRGFVFITFK 132
>gi|302411744|ref|XP_003003705.1| nucleolar protein [Verticillium albo-atrum VaMs.102]
gi|261357610|gb|EEY20038.1| nucleolar protein [Verticillium albo-atrum VaMs.102]
Length = 550
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 94/189 (49%), Gaps = 18/189 (9%)
Query: 42 SLTKSKNHALSSVTSMFKPYGE-VETVRFRSVPVADITLPRKACIKMNKVHEKRT-NMNA 99
S TK+ L + S GE +E++RFRS+ + ++P++A + + E T + NA
Sbjct: 204 STTKAAKKTLMTHLSTVLEKGEKIESIRFRSLAFSAGSMPKRAAYITHSLMEATTKSANA 263
Query: 100 YVRFKNLESVEKALE-MNGHVIDEHTIRVDK-ALTTTKSNSHSIFIGNIPFEAEEEELRK 157
YV + + KA +NG V+ + IRVD A + +F+GN+ F +E L
Sbjct: 264 YVVYSTPAAARKACTTLNGSVVLDRHIRVDSVAHPAPTDHRRCVFVGNLGFVDDETVLN- 322
Query: 158 AFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNI 217
++ GE R ++I +G V F E+ G++++VR+IRD T +
Sbjct: 323 -TDASGETKE-RKRNKVPSDIEEGLWRV-FGKED----------GKVESVRVIRDPKTRV 369
Query: 218 GKGFGYVNF 226
GKGF YV F
Sbjct: 370 GKGFAYVQF 378
>gi|449267179|gb|EMC78145.1| Heterogeneous nuclear ribonucleoprotein A/B, partial [Columba
livia]
Length = 263
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 62/115 (53%), Gaps = 2/115 (1%)
Query: 85 IKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKSNSHSIFIG 144
IKM+ + R+ ++ FK SVEK LE H +D I KA+ K IF+G
Sbjct: 31 IKMD-PNTGRSRGFGFILFKEPGSVEKVLEQKEHRLDGRLIDPKKAMAMKKDPVKKIFVG 89
Query: 145 NIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
+ EA EE++R+ F GEI+ + L D TN +GF ++ FK EE+ ++K E
Sbjct: 90 GLNPEATEEKIREYFGEFGEIEAIELPMDPKTNKRRGFVFITFK-EEDPVKKVLE 143
Score = 40.0 bits (92), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 29/132 (21%), Positives = 53/132 (40%), Gaps = 45/132 (34%)
Query: 141 IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK------------ 188
+F+G + ++ +++L+ F GE+ + + D +T +GFG++ FK
Sbjct: 2 MFVGGLSWDTSKKDLKDYFTKFGEVTDCTIKMDPNTGRSRGFGFILFKEPGSVEKVLEQK 61
Query: 189 ---------------------------------AEEEELRKAFESCGEIDNVRLIRDQHT 215
A EE++R+ F GEI+ + L D T
Sbjct: 62 EHRLDGRLIDPKKAMAMKKDPVKKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKT 121
Query: 216 NIGKGFGYVNFK 227
N +GF ++ FK
Sbjct: 122 NKRRGFVFITFK 133
>gi|346978411|gb|EGY21863.1| nucleolar protein [Verticillium dahliae VdLs.17]
Length = 550
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 86/167 (51%), Gaps = 17/167 (10%)
Query: 63 EVETVRFRSVPVADITLPRKACIKMNKVHEKRT-NMNAYVRFKNLESVEKALE-MNGHVI 120
++E++RFRS+ + ++P++A + + E T + NAYV + + KA +NG V+
Sbjct: 226 KIESIRFRSLAFSAGSMPKRAAYITHSLMEATTKSANAYVVYSTPAAARKACTTLNGSVV 285
Query: 121 DEHTIRVDK-ALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIG 179
+ IRVD A + +F+GN+ F +E L ++ GE R ++I
Sbjct: 286 LDRHIRVDSVAHPAPTDHRRCVFVGNLGFVDDETVLN--TDASGETKE-RKRNKVPSDIE 342
Query: 180 KGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 226
+G V F E+ G++++VR+IRD T +GKGF YV F
Sbjct: 343 EGLWRV-FGKED----------GKVESVRVIRDPKTRVGKGFAYVQF 378
>gi|403290028|ref|XP_003936135.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A/B [Saimiri
boliviensis boliviensis]
Length = 260
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 57/106 (53%), Gaps = 1/106 (0%)
Query: 94 RTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKSNSHSIFIGNIPFEAEEE 153
R+ ++ FK+ SVEK L+ H +D I KA+ K IF+G + EA EE
Sbjct: 38 RSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKKAMAMKKDPVKKIFVGGLNPEATEE 97
Query: 154 ELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
++R+ F GEI+ + L D N +GF ++ FK EEE ++K E
Sbjct: 98 KIREYFGDFGEIEAIELPMDPKLNKRRGFVFITFK-EEEPVKKVLE 142
>gi|428182843|gb|EKX51702.1| hypothetical protein GUITHDRAFT_102308 [Guillardia theta CCMP2712]
Length = 275
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/91 (39%), Positives = 49/91 (53%), Gaps = 17/91 (18%)
Query: 125 IRVDKALTTTKSNSHSIFIGNIPF-EAEEEELRKA---------------FESCGEIDNV 168
IR D A ++ SIF+GN+PF A E+ +R F SCG+I+NV
Sbjct: 47 IRCDIATGANYVSARSIFLGNVPFVNASEDSIRNIWHIVTISFDESCRLLFRSCGDIENV 106
Query: 169 RLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
RL+RD+ T GKGFGY+ F E + KA +
Sbjct: 107 RLVRDKMTGYGKGFGYIQF-VNETSVHKALQ 136
>gi|297676866|ref|XP_002816343.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A/B [Pongo
abelii]
Length = 259
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 62/116 (53%), Gaps = 2/116 (1%)
Query: 84 CIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKSNSHSIFI 143
IKM+ + R+ ++ FK+ SVEK L+ H +D I KA+ K IF+
Sbjct: 29 TIKMDP-NTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKKAMAMKKDPVKKIFV 87
Query: 144 GNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
G + EA EE++R+ F GEI+ + L D N +GF ++ FK EEE ++K E
Sbjct: 88 GGLNPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFK-EEEPVKKVLE 142
>gi|240849376|ref|NP_001155365.1| Vg1 mRNA binding protein 40 [Xenopus laevis]
gi|49257602|gb|AAH74212.1| Unknown (protein for MGC:83385) [Xenopus laevis]
gi|157415960|gb|ABV54637.1| Vg1 mRNA binding protein 40 [Xenopus laevis]
Length = 326
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 60/106 (56%), Gaps = 1/106 (0%)
Query: 94 RTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKSNSHSIFIGNIPFEAEEE 153
R+ ++ FK+ SV+K LE H +D I KA+ K IF+G + EA E+
Sbjct: 104 RSRGFGFILFKDAASVDKVLEHKEHRLDGRLIDPKKAMAMKKEPIKKIFVGGLNPEAGED 163
Query: 154 ELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
++R+ FE+ GEI+ V L D TN +GF ++ FK EEE ++K E
Sbjct: 164 KIREYFETFGEIEAVELPMDPKTNKRRGFVFITFK-EEEPVKKILE 208
Score = 43.5 bits (101), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 56/132 (42%), Gaps = 45/132 (34%)
Query: 141 IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK------------ 188
+F+G + ++ +++L+ FE GE+ + + D +T +GFG++ FK
Sbjct: 67 MFVGGLSWDTSKKDLKDYFEKFGEVSDCTIKMDPNTGRSRGFGFILFKDAASVDKVLEHK 126
Query: 189 ---------------------------------AEEEELRKAFESCGEIDNVRLIRDQHT 215
A E+++R+ FE+ GEI+ V L D T
Sbjct: 127 EHRLDGRLIDPKKAMAMKKEPIKKIFVGGLNPEAGEDKIREYFETFGEIEAVELPMDPKT 186
Query: 216 NIGKGFGYVNFK 227
N +GF ++ FK
Sbjct: 187 NKRRGFVFITFK 198
>gi|342183672|emb|CCC93152.1| putative RNA binding protein [Trypanosoma congolense IL3000]
Length = 423
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 81/161 (50%), Gaps = 28/161 (17%)
Query: 53 SVTSMFKPYGEVETVRFRSVPVAD-------ITLPRKACIKMNKVHEKRTNMN------- 98
+V +FK G +E++R R V D T R+ + +H R ++
Sbjct: 142 TVEKIFKSCGTIESLRIRGQAVVDEGGVDENGTNARQRKV-GRAIHVLRGDVKKGEHYSA 200
Query: 99 -AYVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKSNSH------SIFIGNIPFEAE 151
AYV FK+ S+++AL+ NG V++ I +TT S S+FIGNI ++
Sbjct: 201 VAYVLFKDKSSIQEALKKNGIVVEGRHI----VVTTMDPESREYAPETSVFIGNIAYDTN 256
Query: 152 EEELRKAFESCGEID--NVRLIRDQHTNIGKGFGYVNFKAE 190
EE +R F G +D +RL+RD+ T KGFGYV F+++
Sbjct: 257 EEAVRNFFVERGILDVKRIRLVRDRSTGDCKGFGYVEFESK 297
>gi|367018418|ref|XP_003658494.1| hypothetical protein MYCTH_2294324 [Myceliophthora thermophila ATCC
42464]
gi|347005761|gb|AEO53249.1| hypothetical protein MYCTH_2294324 [Myceliophthora thermophila ATCC
42464]
Length = 608
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 86/172 (50%), Gaps = 17/172 (9%)
Query: 60 PYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRT-NMNAYVRFKNLESVEKAL-EMNG 117
P +VE++RFRS P +P++A +V E T + NAYV + + A+ ++NG
Sbjct: 266 PPQKVESIRFRSTPFQSAGIPKRAAYIKKEVLEATTKSTNAYVVYSTTAASRLAVAQLNG 325
Query: 118 HVIDEHTIRVDK-ALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCG-EIDNVRLIRDQH 175
++ + +RVD A + +F+GN+ F +E + G E+ +++ +
Sbjct: 326 TIVLDRHLRVDSVAHPAPIDHRRCVFVGNLGFVDDETVYNTKIDEEGKEV----VVKRKR 381
Query: 176 TNIGKGFGYVNFKAEEEELRKAF-ESCGEIDNVRLIRDQHTNIGKGFGYVNF 226
T EE L + F E G++++VR++RD T +GKGF YV F
Sbjct: 382 TKTPMDV--------EEGLWRVFGEEAGKVESVRVVRDPVTRVGKGFAYVQF 425
>gi|14388456|dbj|BAB60767.1| hypothetical protein [Macaca fascicularis]
Length = 183
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 57/106 (53%), Gaps = 1/106 (0%)
Query: 94 RTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKSNSHSIFIGNIPFEAEEE 153
R+ ++ FK+ SVEK L+ H +D I KA+ K IF+G + EA EE
Sbjct: 7 RSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKKAMAMKKDPVKKIFVGGLNPEATEE 66
Query: 154 ELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
++R+ F GEI+ + L D N +GF ++ FK EEE ++K E
Sbjct: 67 KIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFK-EEEPVKKVLE 111
>gi|332265255|ref|XP_003281643.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A/B [Nomascus
leucogenys]
Length = 261
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 57/106 (53%), Gaps = 1/106 (0%)
Query: 94 RTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKSNSHSIFIGNIPFEAEEE 153
R+ ++ FK+ SVEK L+ H +D I KA+ K IF+G + EA EE
Sbjct: 38 RSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKKAMAMKKDPVKKIFVGGLNPEATEE 97
Query: 154 ELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
++R+ F GEI+ + L D N +GF ++ FK EEE ++K E
Sbjct: 98 KIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFK-EEEPVKKVLE 142
>gi|195390115|ref|XP_002053714.1| GJ23196 [Drosophila virilis]
gi|194151800|gb|EDW67234.1| GJ23196 [Drosophila virilis]
Length = 439
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 72/149 (48%), Gaps = 29/149 (19%)
Query: 57 MFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRT---NMNAYVRFKNLESVEKAL 113
+ +P+G V ++R R T K K H++R ++NAYV + EKAL
Sbjct: 178 LLQPFGTVHSIRLR-------TAGGKQLFK----HKQRKGAGSLNAYVVLDSAVIAEKAL 226
Query: 114 EMNGHVIDEHTIRVDKALTT----------TKSNS----HSIFIGNIPFEAEEEELRKAF 159
+NG E+ +RV A SN ++F+GN+ + A E++LR+ F
Sbjct: 227 ALNGTEFKENHLRVTPAAQVRGAVGAAGNDQASNDADVKRTVFVGNLKYTASEQKLREIF 286
Query: 160 ESCGEIDNVRLIRDQHTNIGKGFGYVNFK 188
SCGEID +R ++D KG YV F+
Sbjct: 287 SSCGEIDYIRCLQDGDKGC-KGVAYVCFQ 314
>gi|397467431|ref|XP_003805422.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A/B [Pan
paniscus]
Length = 261
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 57/106 (53%), Gaps = 1/106 (0%)
Query: 94 RTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKSNSHSIFIGNIPFEAEEE 153
R+ ++ FK+ SVEK L+ H +D I KA+ K IF+G + EA EE
Sbjct: 38 RSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKKAMAMKKDPVKKIFVGGLNPEATEE 97
Query: 154 ELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
++R+ F GEI+ + L D N +GF ++ FK EEE ++K E
Sbjct: 98 KIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFK-EEEPVKKVLE 142
>gi|355691911|gb|EHH27096.1| hypothetical protein EGK_17210, partial [Macaca mulatta]
gi|355750475|gb|EHH54813.1| hypothetical protein EGM_15724, partial [Macaca fascicularis]
Length = 262
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 57/106 (53%), Gaps = 1/106 (0%)
Query: 94 RTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKSNSHSIFIGNIPFEAEEE 153
R+ ++ FK+ SVEK L+ H +D I KA+ K IF+G + EA EE
Sbjct: 39 RSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKKAMAMKKDPVKKIFVGGLNPEATEE 98
Query: 154 ELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
++R+ F GEI+ + L D N +GF ++ FK EEE ++K E
Sbjct: 99 KIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFK-EEEPVKKVLE 143
>gi|156089293|ref|XP_001612053.1| RNA recognition motif domain containing protein [Babesia bovis]
gi|154799307|gb|EDO08485.1| RNA recognition motif domain containing protein [Babesia bovis]
Length = 344
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 67/128 (52%), Gaps = 4/128 (3%)
Query: 64 VETVRFRSVPV-ADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDE 122
V+++ FRS+PV + ++ I K + ++ NAYV+ + + V+ L N ID
Sbjct: 143 VQSIYFRSLPVESKFARNKRVGIIRGKFSDAKSTQNAYVKLVDEKYVDTLLAKNTMEIDG 202
Query: 123 HTIRVDKALTTTKSN---SHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIG 179
H + ++K ++ S +IF+G +P E EL F + + VR+IRD T+
Sbjct: 203 HYLFINKNSPSSFSKFNRKKTIFVGRLPKSTTENELFDVFSNVSAVKGVRIIRDPQTHES 262
Query: 180 KGFGYVNF 187
KGFG+V F
Sbjct: 263 KGFGFVAF 270
>gi|312385885|gb|EFR30277.1| hypothetical protein AND_00214 [Anopheles darlingi]
Length = 399
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 53/162 (32%), Positives = 80/162 (49%), Gaps = 34/162 (20%)
Query: 42 SLTKSKNHAL-----------SSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKV 90
+L K HA+ + V S+FKPYG + TVRFR+ I PR+ +K
Sbjct: 184 ALPKGPEHAIFIGNLPPTINQNKVKSLFKPYGTILTVRFRTNEGGKI--PRRKDMK---- 237
Query: 91 HEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRV----DKALTTTKSNSHSIFIGNI 146
K ++ Y+RF + +E+A M+G +++E+ IRV K + TKS ++F+GNI
Sbjct: 238 --KLKSLICYIRFSSKSEMEQACAMDGQLVEENRIRVCPQKQKQIGATKS---TVFVGNI 292
Query: 147 PFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK 188
+ EL F G I+ VR I + KG +V FK
Sbjct: 293 --TTTDNELYDFFSGVGAIEYVRQIAN------KGVAFVCFK 326
>gi|291387921|ref|XP_002710458.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A/B [Oryctolagus
cuniculus]
Length = 306
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 63/115 (54%), Gaps = 2/115 (1%)
Query: 85 IKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKSNSHSIFIG 144
IKM+ + R+ ++ FK+ SVEK L+ H +D I KA+ K IF+G
Sbjct: 75 IKMDP-NTGRSRGFGFILFKDATSVEKVLDQKEHRLDGRVIDPKKAMAMKKDPVKKIFVG 133
Query: 145 NIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
+ EA EE++R+ F GEI+ + L D +N +GF ++ FK EE+ ++K E
Sbjct: 134 GLNPEATEEKIREYFGEFGEIEAIELPMDPKSNKRRGFVFITFK-EEDPVKKVLE 187
>gi|134106861|ref|XP_777972.1| hypothetical protein CNBA4410 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50260672|gb|EAL23325.1| hypothetical protein CNBA4410 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 444
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 56/106 (52%), Gaps = 18/106 (16%)
Query: 99 AYVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKSN-----------------SHSI 141
YV F +LES KA+E +G ID IRV+ A T K N + ++
Sbjct: 240 GYVEFADLESSAKAIEKDGSEIDGRAIRVNYA-TQRKPNEAAEKRARVFNDKQSPPAETL 298
Query: 142 FIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 187
+IG++ F E+++ +AF G++ +VRL D+ T KGFGYV F
Sbjct: 299 WIGSLSFSVTEDQVYEAFGQHGDVQSVRLPTDRDTGAPKGFGYVQF 344
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 44/72 (61%), Gaps = 3/72 (4%)
Query: 141 IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFES 200
+F+G + + + + L+ FESCGE+ + R++ D+ + +GFGYV F A+ E KA E
Sbjct: 198 VFVGQLSWNVDNDWLKSEFESCGEVVSARVVFDRDSQKSRGFGYVEF-ADLESSAKAIEK 256
Query: 201 CG-EIDNVRLIR 211
G EID R IR
Sbjct: 257 DGSEIDG-RAIR 267
Score = 42.0 bits (97), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 29/44 (65%)
Query: 183 GYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 226
G +++ + + L+ FESCGE+ + R++ D+ + +GFGYV F
Sbjct: 201 GQLSWNVDNDWLKSEFESCGEVVSARVVFDRDSQKSRGFGYVEF 244
>gi|392569148|gb|EIW62322.1| RNA-binding domain-containing protein [Trametes versicolor
FP-101664 SS1]
Length = 556
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 59/118 (50%), Gaps = 17/118 (14%)
Query: 99 AYVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKSNSHS----------------IF 142
YV F E+VE AL +NG ID + +DK+ K + +F
Sbjct: 341 GYVEFATTEAVEAALLLNGKEIDGRPVNIDKSEQKDKGAAREKRAEKFGDSASEPSAVLF 400
Query: 143 IGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFES 200
+GN+ ++ E+++ + F G++ +VRL D+ T KGFGYV F + E +KAFE
Sbjct: 401 VGNLSWDCTEDQVWEVFGEHGDVKSVRLPTDRETGRPKGFGYVEF-TDIETAKKAFEG 457
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 34/62 (54%)
Query: 130 ALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKA 189
A + + SIF+G + + + + L + F CGE+ + R+ D++T +GFGYV F
Sbjct: 288 AAAVEEEGTKSIFVGRLSWNVDNDWLAQEFAECGEVISARVQMDRNTGKSRGFGYVEFAT 347
Query: 190 EE 191
E
Sbjct: 348 TE 349
Score = 37.4 bits (85), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 27/44 (61%)
Query: 183 GYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 226
G +++ + + L + F CGE+ + R+ D++T +GFGYV F
Sbjct: 302 GRLSWNVDNDWLAQEFAECGEVISARVQMDRNTGKSRGFGYVEF 345
>gi|119484168|ref|XP_001261987.1| RNA binding protein, putative [Neosartorya fischeri NRRL 181]
gi|119410143|gb|EAW20090.1| RNA binding protein, putative [Neosartorya fischeri NRRL 181]
Length = 537
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 97/185 (52%), Gaps = 23/185 (12%)
Query: 51 LSSVTSMFKPYGEVETVRFRSVPVADIT-LPRKACIKMNKVHEKRT-NMNAYVRFKNLES 108
LS++ P+ +VE++RFRSV A +P++A ++ + T + NAY + +++
Sbjct: 232 LSTLPESTGPH-KVESIRFRSVAFASGGKVPKRAAFARREILDDTTPSTNAYAVYSTVQA 290
Query: 109 VEKA-LEMNGHVIDEHTIRVDKALTTTK-SNSHSIFIGNIPF-----EAEEEELRKAFES 161
KA +NG V+ + +RVD ++ + +F+GN+ F + EE+E +K +S
Sbjct: 291 ARKAPAALNGTVVLDRHLRVDSVAHPSQIDHKRCVFVGNLDFVDNETDPEEDEKKKKKKS 350
Query: 162 CGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGF 221
G D + +G + F A + ++ + G +++VR++RD+ T +GKGF
Sbjct: 351 -GPAD-----------VEEGL-WRTFNAHTKGSKERTSTKGNVESVRVVRDRTTRVGKGF 397
Query: 222 GYVNF 226
YV F
Sbjct: 398 AYVQF 402
>gi|550458|gb|AAA68014.1| ribonucleoprotein [Gallus gallus]
gi|1095499|prf||2109229A RNA-binding protein
Length = 285
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 62/115 (53%), Gaps = 2/115 (1%)
Query: 85 IKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKSNSHSIFIG 144
IKM+ + R+ + FK SVEK LE H +D I KA+ K IF+G
Sbjct: 104 IKMD-PNTGRSRGFGFRLFKEPGSVEKVLEQKEHRLDGRLIDPKKAMAMKKDPVKKIFVG 162
Query: 145 NIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
+ EA EE++R+ F GEI+ + L D TN +GF +++FK EE+ ++K E
Sbjct: 163 GLNPEATEEKIREYFGEFGEIEAIELPMDPKTNKRRGFVFISFK-EEDPVKKVLE 216
>gi|451849708|gb|EMD63011.1| hypothetical protein COCSADRAFT_119937 [Cochliobolus sativus
ND90Pr]
Length = 555
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 72/152 (47%), Gaps = 25/152 (16%)
Query: 60 PYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRT-NMNAYVRFKNLESVEKALE-MNG 117
P ++E++RFRS +LP++A + + T + NAY + + +A++ +NG
Sbjct: 270 PPHKIESIRFRSTAFGS-SLPKRAAFAKKDIMDATTKSTNAYAVYTTKVAAREAVKRLNG 328
Query: 118 HVIDEHTIRVDKALTTTK-SNSHSIFIGNIPFEAEEEELRKA------------------ 158
V+ + VD K + +F+GN+PF +E ++ A
Sbjct: 329 SVLLNRHLHVDSVAHPAKVDHRRCVFVGNLPFVDDESQMPVAEGEKPKKNKPSSDVEEGL 388
Query: 159 ---FESCGEIDNVRLIRDQHTNIGKGFGYVNF 187
CG I++VR++RD T +GKGF YV F
Sbjct: 389 WVHLSKCGTIESVRVVRDAKTRVGKGFAYVQF 420
>gi|162951821|ref|NP_001106165.1| heterogeneous nuclear ribonucleoprotein A/B [Sus scrofa]
gi|160858224|dbj|BAF93845.1| CArG-binding factor A [Sus scrofa]
Length = 302
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 63/115 (54%), Gaps = 2/115 (1%)
Query: 85 IKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKSNSHSIFIG 144
IKM+ + R+ ++ FK+ SVEK L+ H +D I KA+ K IF+G
Sbjct: 117 IKMD-PNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKKAMAMKKDPVKKIFVG 175
Query: 145 NIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
+ EA EE++R+ F GEI+ + L D +N +GF ++ FK EEE ++K E
Sbjct: 176 GLNPEATEEKIREYFGEFGEIEAIELPMDPKSNKRRGFVFITFK-EEEPVKKVLE 229
>gi|58258845|ref|XP_566835.1| single-stranded DNA binding protein [Cryptococcus neoformans var.
neoformans JEC21]
gi|57222972|gb|AAW41016.1| single-stranded DNA binding protein, putative [Cryptococcus
neoformans var. neoformans JEC21]
Length = 441
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 56/106 (52%), Gaps = 18/106 (16%)
Query: 99 AYVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKSN-----------------SHSI 141
YV F +LES KA+E +G ID IRV+ A T K N + ++
Sbjct: 237 GYVEFADLESSAKAIEKDGSEIDGRAIRVNYA-TQRKPNEAAEKRARVFNDKQSPPAETL 295
Query: 142 FIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 187
+IG++ F E+++ +AF G++ +VRL D+ T KGFGYV F
Sbjct: 296 WIGSLSFSVTEDQVYEAFGQHGDVQSVRLPTDRDTGAPKGFGYVQF 341
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 44/72 (61%), Gaps = 3/72 (4%)
Query: 141 IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFES 200
+F+G + + + + L+ FESCGE+ + R++ D+ + +GFGYV F A+ E KA E
Sbjct: 195 VFVGQLSWNVDNDWLKSEFESCGEVVSARVVFDRDSQKSRGFGYVEF-ADLESSAKAIEK 253
Query: 201 CG-EIDNVRLIR 211
G EID R IR
Sbjct: 254 DGSEIDG-RAIR 264
Score = 41.6 bits (96), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 29/44 (65%)
Query: 183 GYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 226
G +++ + + L+ FESCGE+ + R++ D+ + +GFGYV F
Sbjct: 198 GQLSWNVDNDWLKSEFESCGEVVSARVVFDRDSQKSRGFGYVEF 241
>gi|390594976|gb|EIN04384.1| RNA-binding domain-containing protein [Punctularia strigosozonata
HHB-11173 SS5]
Length = 611
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 64/119 (53%), Gaps = 18/119 (15%)
Query: 99 AYVRFKNLESVEKALE-MNGHVIDEHTIRVDKAL----------------TTTKSNSHSI 141
+V F + SV+KA++ MNG ID + VD+A +T + S +
Sbjct: 387 GHVEFADASSVQKAIDTMNGKEIDGRPVNVDRAPGLNKNQQRENRAKAFGDSTSAPSSVL 446
Query: 142 FIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFES 200
F+GN+ ++A E+ + +AF GE+ +VRL D+ + KGFGYV F + + + AFE+
Sbjct: 447 FVGNLSWDATEDAVWEAFGEHGEVKSVRLPTDRESGRPKGFGYVEF-VDVDAAKAAFEA 504
Score = 44.7 bits (104), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 50/96 (52%), Gaps = 12/96 (12%)
Query: 138 SHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKA 197
S +IF+G + + ++++L F CGE+ + R+ D++T +GFG+V F A+ ++KA
Sbjct: 342 SKTIFVGRLSWNVDDDQLASEFAECGEVVSARVNIDRNTGKSRGFGHVEF-ADASSVQKA 400
Query: 198 FESCG--EIDNVRLIRD---------QHTNIGKGFG 222
++ EID + D Q N K FG
Sbjct: 401 IDTMNGKEIDGRPVNVDRAPGLNKNQQRENRAKAFG 436
>gi|431892736|gb|ELK03169.1| Heterogeneous nuclear ribonucleoprotein A/B [Pteropus alecto]
Length = 230
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 58/106 (54%), Gaps = 1/106 (0%)
Query: 94 RTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKSNSHSIFIGNIPFEAEEE 153
R+ ++ FK+ SVEK L+ H +D I KA+ K IF+G + EA EE
Sbjct: 7 RSRGFGFILFKDSASVEKVLDQKEHRLDGRVIDPKKAMAMKKDPVKKIFVGGLNPEATEE 66
Query: 154 ELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
++R+ F GEI+ + L D +N +GF ++ FK EEE ++K E
Sbjct: 67 KIREYFGEFGEIEAIELPVDPKSNKRRGFVFITFK-EEEPVKKVLE 111
>gi|157114083|ref|XP_001657973.1| nucleolysin tia-1 [Aedes aegypti]
gi|108877443|gb|EAT41668.1| AAEL006710-PA [Aedes aegypti]
Length = 453
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 62/112 (55%), Gaps = 9/112 (8%)
Query: 90 VHEKRTNMNAYVRFKNLESVEKALE-MNGHVIDEHTIRVDKALT------TTKSNSHSIF 142
+ E ++ A++ + N +S + AL MN + + I+V+ A + T S H IF
Sbjct: 40 IREASSDPYAFIEYANHQSAQTALAAMNKRLFLKKEIKVNWATSPGNQPKTDTSQHHHIF 99
Query: 143 IGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF--KAEEE 192
+G++ E E E LR+AF GEI N R++RD T +G+ +V+F KAE E
Sbjct: 100 VGDLSPEIETETLREAFAPFGEISNCRIVRDPQTLKSRGYAFVSFVKKAEAE 151
>gi|154344829|ref|XP_001568356.1| putative RNA binding protein [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134065693|emb|CAM43465.1| putative RNA binding protein [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 458
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 82/193 (42%), Gaps = 45/193 (23%)
Query: 54 VTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMN--------------- 98
V +FK G + VR R C + ++ EK NM
Sbjct: 180 VEKIFKSCGSITAVRIR-------------CQALEELDEKHQNMGRAVRVLRGEIKKDAK 226
Query: 99 ----AYVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKSNS------HSIFIGNIPF 148
AYV F + ES+ ALE NG V I +TT S SIF+GN+ +
Sbjct: 227 YSSTAYVLFDSAESIASALEKNGLVFHNRHI----VVTTMDVESCAYPPETSIFLGNVAY 282
Query: 149 EAEEEELRKAFESCG--EIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDN 206
+ EE++ F+ G ++ VRL+RD+ T KGFGYV F + A E+ G+ N
Sbjct: 283 DTTEEDVWNFFQEHGIRDVKRVRLVRDRETGDCKGFGYVEF-MHASSVHPAIETRGDKLN 341
Query: 207 VRLIRDQHTNIGK 219
R +R H N K
Sbjct: 342 GRELRIVHVNKSK 354
>gi|452989554|gb|EME89309.1| hypothetical protein MYCFIDRAFT_149907 [Pseudocercospora fijiensis
CIRAD86]
Length = 500
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 64/136 (47%), Gaps = 27/136 (19%)
Query: 94 RTNMNAYVRFKNLESVEKALEM-NGHVIDEHTIRVDKALTTTKSN--------------- 137
R+ YV F+N E KALE NG +D IR+D + + N
Sbjct: 284 RSKGFGYVEFENAEDAAKALEAKNGAELDNRAIRLD--FSVPRQNNAQNPQQRGQERRQQ 341
Query: 138 --------SHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKA 189
S ++F+GN+ F+A E+ +R+ FE G I+ +RL D+ + KGFGYV
Sbjct: 342 YGDKASEPSQTLFVGNLSFDATEDMVREYFEEHGSINGIRLPTDRESGAPKGFGYVEM-G 400
Query: 190 EEEELRKAFESCGEID 205
+E + A+E+ D
Sbjct: 401 SIDEAKAAYEALQGAD 416
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/95 (38%), Positives = 53/95 (55%), Gaps = 5/95 (5%)
Query: 120 IDEHTIRVDKALTTTKSN-SHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNI 178
DE + K T N + ++FIGN+ + +EE L + FE GE+ VR+I D+ +
Sbjct: 225 ADEEPEQSPKKAKTEDPNVTGNLFIGNLSWNVDEEWLTREFEEFGELKGVRIITDRDSGR 284
Query: 179 GKGFGYVNFKAEEEELRKAFES--CGEIDNVRLIR 211
KGFGYV F+ E+ KA E+ E+DN R IR
Sbjct: 285 SKGFGYVEFE-NAEDAAKALEAKNGAELDN-RAIR 317
Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 28/44 (63%)
Query: 183 GYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 226
G +++ +EE L + FE GE+ VR+I D+ + KGFGYV F
Sbjct: 250 GNLSWNVDEEWLTREFEEFGELKGVRIITDRDSGRSKGFGYVEF 293
>gi|427794973|gb|JAA62938.1| Putative transcriptional coactivator caper rrm superfamily, partial
[Rhipicephalus pulchellus]
Length = 509
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 65/125 (52%), Gaps = 19/125 (15%)
Query: 93 KRTNMNAYVRFKNLESVEKALEMNGH-------VIDEHTIRVDKALTTTKSNSHS----- 140
+R+ AYV F+++ESV A+ +NG V+ ++A S S+S
Sbjct: 188 RRSKGIAYVEFQDVESVPLAMGLNGQKLFGIPIVVQPTQAERNRAAAQNASTSNSTLQRG 247
Query: 141 ------IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEEL 194
+++G++ F EE L+ FE G+ID + LI+D TN KG+G++ F + E+
Sbjct: 248 NVGPMRLYVGSLHFNITEEMLKGIFEPFGKIDKIELIKDMETNRSKGYGFITFH-DSEDA 306
Query: 195 RKAFE 199
+KA E
Sbjct: 307 KKALE 311
>gi|426229393|ref|XP_004008775.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A/B isoform 1
[Ovis aries]
Length = 285
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 58/106 (54%), Gaps = 1/106 (0%)
Query: 94 RTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKSNSHSIFIGNIPFEAEEE 153
R+ ++ FK+ SVEK L+ H +D I KA+ K IF+G + EA EE
Sbjct: 109 RSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKKAMAMKKDPVKKIFVGGLNPEATEE 168
Query: 154 ELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
++R+ F GEI+ + L D +N +GF ++ FK EEE ++K E
Sbjct: 169 KIREYFGEFGEIEAIELPMDPKSNKRRGFVFITFK-EEEPVKKVLE 213
>gi|452001527|gb|EMD93986.1| hypothetical protein COCHEDRAFT_1201816 [Cochliobolus
heterostrophus C5]
Length = 560
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 73/155 (47%), Gaps = 25/155 (16%)
Query: 60 PYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRT-NMNAYVRFKNLESVEKALE-MNG 117
P ++E++RFRS +LP++A + + T + NAY + + +A++ +NG
Sbjct: 275 PPHKIESIRFRSTAFGS-SLPKRAAFAKKDIMDATTKSTNAYAVYTTKVAAREAVKRLNG 333
Query: 118 HVIDEHTIRVDKALTTTK-SNSHSIFIGNIPFEAEEEELRKA------------------ 158
V+ + VD K + +F+GN+PF +E ++ A
Sbjct: 334 SVLLNRHLHVDSVAHPAKVDHRRCVFVGNLPFVDDESQMPVAEGEKPKKNKPSSDVEEGL 393
Query: 159 ---FESCGEIDNVRLIRDQHTNIGKGFGYVNFKAE 190
CG I++VR++RD T +GKGF YV F E
Sbjct: 394 WVHLSKCGTIESVRVVRDAKTRVGKGFAYVQFTDE 428
>gi|340056502|emb|CCC50835.1| putative RNA-binding protein [Trypanosoma vivax Y486]
Length = 429
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/124 (37%), Positives = 65/124 (52%), Gaps = 8/124 (6%)
Query: 99 AYVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKSNSH--SIFIGNIPFEAEEEELR 156
AYV FK+ SV +AL+ NG V++ I V ++ S+FIGNI + EE +R
Sbjct: 205 AYVLFKSASSVPEALKHNGVVVEGRHIVVTAMDMESREYKPELSVFIGNIDYGTNEESVR 264
Query: 157 KAFESCG--EIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEI---DNVRLIR 211
F G ++ VRLIRD+ T + KGFGYV F + KA G I +R++R
Sbjct: 265 NFFVEKGLDDVRRVRLIRDRETGVCKGFGYVEF-GSSSSVPKAVGLRGSIFSGREIRIVR 323
Query: 212 DQHT 215
Q +
Sbjct: 324 TQKS 327
>gi|94966849|ref|NP_001035612.1| heterogeneous nuclear ribonucleoprotein A/B [Bos taurus]
gi|73587357|gb|AAI02924.1| Heterogeneous nuclear ribonucleoprotein A/B [Bos taurus]
gi|296485515|tpg|DAA27630.1| TPA: heterogeneous nuclear ribonucleoprotein A/B [Bos taurus]
Length = 285
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 58/106 (54%), Gaps = 1/106 (0%)
Query: 94 RTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKSNSHSIFIGNIPFEAEEE 153
R+ ++ FK+ SVEK L+ H +D I KA+ K IF+G + EA EE
Sbjct: 109 RSRGFGFILFKDATSVEKVLDQKEHRLDGRVIDPKKAMAMKKDPVKKIFVGGLNPEATEE 168
Query: 154 ELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
++R+ F GEI+ + L D +N +GF ++ FK EEE ++K E
Sbjct: 169 KIREYFGEFGEIEAIELPMDPKSNKRRGFVFITFK-EEEPVKKVLE 213
>gi|410343157|gb|JAA40525.1| heterogeneous nuclear ribonucleoprotein A/B [Pan troglodytes]
Length = 285
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 63/115 (54%), Gaps = 2/115 (1%)
Query: 85 IKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKSNSHSIFIG 144
IKM+ + R+ ++ FK+ SVEK L+ H +D I KA+ K+ IF+G
Sbjct: 101 IKMDP-NTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKKAMAMKKAPVKKIFVG 159
Query: 145 NIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
+ EA EE++R+ F GEI+ + L D N +GF ++ FK EEE ++K E
Sbjct: 160 GLNPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFK-EEEPVKKVLE 213
>gi|427792527|gb|JAA61715.1| Putative transcriptional coactivator caper rrm superfamily, partial
[Rhipicephalus pulchellus]
Length = 497
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 65/125 (52%), Gaps = 19/125 (15%)
Query: 93 KRTNMNAYVRFKNLESVEKALEMNGH-------VIDEHTIRVDKALTTTKSNSHS----- 140
+R+ AYV F+++ESV A+ +NG V+ ++A S S+S
Sbjct: 176 RRSKGIAYVEFQDVESVPLAMGLNGQKLFGIPIVVQPTQAERNRAAAQNASTSNSTLQRG 235
Query: 141 ------IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEEL 194
+++G++ F EE L+ FE G+ID + LI+D TN KG+G++ F + E+
Sbjct: 236 NVGPMRLYVGSLHFNITEEMLKGIFEPFGKIDKIELIKDMETNRSKGYGFITFH-DSEDA 294
Query: 195 RKAFE 199
+KA E
Sbjct: 295 KKALE 299
>gi|332822801|ref|XP_518142.3| PREDICTED: heterogeneous nuclear ribonucleoprotein A/B [Pan
troglodytes]
Length = 338
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 62/115 (53%), Gaps = 2/115 (1%)
Query: 85 IKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKSNSHSIFIG 144
IKM+ + R+ ++ FK+ SVEK L+ H +D I KA+ K IF+G
Sbjct: 107 IKMDP-NTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKKAMAMKKDPVKKIFVG 165
Query: 145 NIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
+ EA EE++R+ F GEI+ + L D N +GF ++ FK EEE ++K E
Sbjct: 166 GLNPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFK-EEEPVKKVLE 219
>gi|426229395|ref|XP_004008776.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A/B isoform 2
[Ovis aries]
Length = 332
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 63/115 (54%), Gaps = 2/115 (1%)
Query: 85 IKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKSNSHSIFIG 144
IKM+ + R+ ++ FK+ SVEK L+ H +D I KA+ K IF+G
Sbjct: 101 IKMD-PNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKKAMAMKKDPVKKIFVG 159
Query: 145 NIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
+ EA EE++R+ F GEI+ + L D +N +GF ++ FK EEE ++K E
Sbjct: 160 GLNPEATEEKIREYFGEFGEIEAIELPMDPKSNKRRGFVFITFK-EEEPVKKVLE 213
>gi|351704017|gb|EHB06936.1| Heterogeneous nuclear ribonucleoprotein A/B, partial
[Heterocephalus glaber]
Length = 261
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 57/106 (53%), Gaps = 1/106 (0%)
Query: 94 RTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKSNSHSIFIGNIPFEAEEE 153
R+ ++ FK+ SVEK L+ H +D I KA+ K IF+G + EA EE
Sbjct: 39 RSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKKAMAMKKDPVKKIFVGGLNPEATEE 98
Query: 154 ELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
++R+ F GEI+ + L D N +GF ++ FK EE+ ++K E
Sbjct: 99 KIREYFGDFGEIEAIELPMDPKLNKRRGFVFITFK-EEDPVKKVLE 143
>gi|7446337|pir||T15542 hypothetical protein C18A3.5 - Caenorhabditis elegans
Length = 448
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 76/147 (51%), Gaps = 12/147 (8%)
Query: 77 ITLPRKACIKMNKVH-EKRTNMN---AYVRFKNLESVEKALE-MNGHVIDEHTIRVDKAL 131
I +P C + +H + T N A+V F + +AL+ MN ++ + ++V+ A+
Sbjct: 101 IGVPGYKCTRRQPIHTDTETGSNDPYAFVEFSDHGQASQALQTMNKRLLLDREMKVNWAV 160
Query: 132 TTTKSNSH-------SIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGY 184
+ S +F+G++ E + ++LR+AF+ G++ + ++IRD +T KG+G+
Sbjct: 161 EPGQQQSKIDTTRHFHVFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGF 220
Query: 185 VNFKAEEEELRKAFESCGEIDNVRLIR 211
V++ EE R + G+ R IR
Sbjct: 221 VSYPKREEAERAIEQMNGQWLGRRTIR 247
Score = 42.0 bits (97), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 62/152 (40%), Gaps = 46/152 (30%)
Query: 58 FKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALE-MN 116
F+P+G+V +D + R +K + +V + E E+A+E MN
Sbjct: 195 FQPFGDV----------SDAKVIRDTNTTKSKGY-------GFVSYPKREEAERAIEQMN 237
Query: 117 GHVIDEHTIRV---------------------DKALTTTKSNSHSIFIGNIPFEAEEEEL 155
G + TIR D+ T ++ S+++GNI E+E+
Sbjct: 238 GQWLGRRTIRTNWATRKPGDQEKPSHYNEKSYDEIYNQTSGDNTSVYVGNIA-SLTEDEI 296
Query: 156 RKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 187
R+ F S G I VR+ + Q G+ +V F
Sbjct: 297 RQGFASFGRITEVRIFKMQ------GYAFVKF 322
>gi|45384514|ref|NP_990659.1| heterogeneous nuclear ribonucleoprotein A/B [Gallus gallus]
gi|515838|emb|CAA56586.1| single stranded D box binding factor [Gallus gallus]
Length = 302
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 57/106 (53%), Gaps = 1/106 (0%)
Query: 94 RTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKSNSHSIFIGNIPFEAEEE 153
R+ ++ FK SVEK LE H +D I KA+ K IF+G + EA EE
Sbjct: 129 RSRGFGFILFKEPGSVEKVLEQKEHRLDGRLIDPKKAMAMKKDPVKKIFVGGLNPEATEE 188
Query: 154 ELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
++R+ F GEI+ + L D TN +GF ++ FK EE+ ++K E
Sbjct: 189 KIREYFGEFGEIEAIELPMDPKTNKRRGFVFITFK-EEDPVKKVLE 233
Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/141 (20%), Positives = 57/141 (40%), Gaps = 45/141 (31%)
Query: 132 TTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK--- 188
+ + ++ +F+G + ++ +++L+ F GE+ + + D +T +GFG++ FK
Sbjct: 83 SKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVTDCTIKMDPNTGRSRGFGFILFKEPG 142
Query: 189 ------------------------------------------AEEEELRKAFESCGEIDN 206
A EE++R+ F GEI+
Sbjct: 143 SVEKVLEQKEHRLDGRLIDPKKAMAMKKDPVKKIFVGGLNPEATEEKIREYFGEFGEIEA 202
Query: 207 VRLIRDQHTNIGKGFGYVNFK 227
+ L D TN +GF ++ FK
Sbjct: 203 IELPMDPKTNKRRGFVFITFK 223
>gi|367020140|ref|XP_003659355.1| hypothetical protein MYCTH_2296269 [Myceliophthora thermophila ATCC
42464]
gi|347006622|gb|AEO54110.1| hypothetical protein MYCTH_2296269 [Myceliophthora thermophila ATCC
42464]
Length = 534
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 69/140 (49%), Gaps = 23/140 (16%)
Query: 94 RTNMNAYVRFKNLESVEKAL-EMNGHVIDEHTIRVD-----------KALTTTKSNSH-- 139
R+ YV F+N ++ EKA E NG + +R+D A ++ H
Sbjct: 335 RSRGFGYVDFENPDAAEKAYNEKNGAFLQGREMRLDFASKPNADAPPSARAAERARKHGD 394
Query: 140 -------SIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEE 192
++F+GN+PF A+E+ + K F ++ ++R+ DQ + KGF YV F + E
Sbjct: 395 VISPESDTLFVGNLPFSADEDSVSKFFNKAAKVQSLRIPTDQESGRPKGFAYVTF-SSVE 453
Query: 193 ELRKAFESCGEID-NVRLIR 211
+ +KAFE+ D + R +R
Sbjct: 454 DAKKAFETLNGSDLDGRPVR 473
>gi|345790896|ref|XP_543410.3| PREDICTED: probable RNA-binding protein 19 [Canis lupus familiaris]
Length = 970
Score = 63.5 bits (153), Expect = 6e-08, Method: Composition-based stats.
Identities = 41/131 (31%), Positives = 72/131 (54%), Gaps = 17/131 (12%)
Query: 86 KMNKVHEKRTNMNAYVRFKNLESVEKAL-EMNGHVIDEHTIRV-------DKALTTT--- 134
K NK E + +V ++ E +KAL ++ GHV+D H + V ALT+T
Sbjct: 766 KKNKAGELLSMGFGFVEYRKPEQAQKALKQLQGHVVDSHKLEVRISERATKPALTSTRKK 825
Query: 135 ----KSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQH-TNIGKGFGYVNFKA 189
K + I + NIPF+A++ E+++ F + GE+ VRL + T +GFG+V+F
Sbjct: 826 QVPRKQTTSKILVRNIPFQADKREIQELFSTFGELKTVRLPKKMTGTGTHRGFGFVDFLT 885
Query: 190 EEEELRKAFES 200
+++ ++AF++
Sbjct: 886 KQDA-KRAFQA 895
Score = 44.7 bits (104), Expect = 0.034, Method: Composition-based stats.
Identities = 47/213 (22%), Positives = 86/213 (40%), Gaps = 38/213 (17%)
Query: 41 PSLTKSKNHALSSVTSMFKPYGEVETVRFRSVP-------VADITLP-RKACIKMNKVHE 92
P +++ L++ PY TV+ R P V + P R I++ +
Sbjct: 277 PGAARAEADKLANQKEPTTPY----TVKLRGAPFNVTEKNVLEFLAPLRPVAIRIVRNAH 332
Query: 93 KRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRV--DKALTTTK--------------- 135
+V F++ E +++AL+ N + I + +K + TTK
Sbjct: 333 GNKTGYIFVDFRSEEEIKQALKCNREYMGGRYIEIFREKNVPTTKGPLKNSAKPWQGRTL 392
Query: 136 ---------SNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVN 186
++S +FI N+P+ + EE+L++ F G + + D T KGF +V
Sbjct: 393 GENEEEEDLADSGRLFIRNLPYTSTEEDLQRLFSKFGPLSELHYPIDSLTKKPKGFAFVT 452
Query: 187 FKAEEEELRKAFESCGEIDNVRLIRDQHTNIGK 219
F E +R E G++ R++ + I K
Sbjct: 453 FIFPEHAVRAYAEVDGQVFQGRMLHVLPSTIKK 485
>gi|328876996|gb|EGG25359.1| hypothetical protein DFA_03608 [Dictyostelium fasciculatum]
Length = 1145
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 76/143 (53%), Gaps = 14/143 (9%)
Query: 57 MFKPYGEVETVRF---RSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKAL 113
+F+ +GE+E+ + R P LP++ + N + +V+F + ES A+
Sbjct: 723 LFEEFGEIESYKVVANRKAP--STLLPQQPPPQANMGY-------GFVKFVHSESAAAAI 773
Query: 114 E-MNGHVIDEHTIRVDKALTTTKSNSHS-IFIGNIPFEAEEEELRKAFESCGEIDNVRLI 171
E MNGH+ D TI+V A T++ ++H+ ++I + +E+L +AF GE+ R++
Sbjct: 774 ESMNGHMTDSKTIKVSYATPTSQQSTHANLYINRLEPHVTKEDLAEAFSKFGELVETRIL 833
Query: 172 RDQHTNIGKGFGYVNFKAEEEEL 194
D +TN + G+V+F + L
Sbjct: 834 MDLNTNTSRCVGFVHFSNRRDAL 856
>gi|347967649|ref|XP_312633.5| AGAP002335-PA [Anopheles gambiae str. PEST]
gi|333468363|gb|EAA07505.5| AGAP002335-PA [Anopheles gambiae str. PEST]
Length = 458
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 58/103 (56%), Gaps = 9/103 (8%)
Query: 99 AYVRFKNLESVEKALE-MNGHVIDEHTIRVDKALT------TTKSNSHSIFIGNIPFEAE 151
A++ + N +S + AL MN + + IRV+ A + T S H IF+G++ E +
Sbjct: 49 AFIEYANHQSAQTALAAMNKRMFLKKEIRVNWATSAGNQPKTDTSQHHHIFVGDLSPEID 108
Query: 152 EEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF--KAEEE 192
E LR+AF GEI N R++RD T +G+ +V+F KAE E
Sbjct: 109 TETLREAFAPFGEISNCRIVRDPQTLKSRGYAFVSFVKKAEAE 151
>gi|121719695|ref|XP_001276546.1| RNA binding protein, putative [Aspergillus clavatus NRRL 1]
gi|119404758|gb|EAW15120.1| RNA binding protein, putative [Aspergillus clavatus NRRL 1]
Length = 536
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 59/207 (28%), Positives = 102/207 (49%), Gaps = 15/207 (7%)
Query: 26 VFL-NIWKMALKLKMNP-SLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADI-TLPRK 82
VFL N+ A+K K +L K LS++ P+ +VE++RFRSV A +P++
Sbjct: 199 VFLGNVSNEAIKSKSGKKTLLKHLASFLSTLPESTGPH-KVESIRFRSVAFASGGKVPKR 257
Query: 83 ACIKMNKVHEKRT-NMNAYVRFKNLESVEKA-LEMNGHVIDEHTIRVDK-ALTTTKSNSH 139
A V + T + NAY + +++ KA +NG V+ + +RVD A + N
Sbjct: 258 ADFARRDVLDDTTPSTNAYAVYSTIQAARKAPAALNGTVVLDRHLRVDSIAHPSPVDNKR 317
Query: 140 SIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
+F+GN+ F E + + + + R ++ +G + F + + +
Sbjct: 318 CVFVGNLDFVDNET-------NPDDDEKKKKKRSVPADVEEGL-WRTFNVQTKGSKDKSS 369
Query: 200 SCGEIDNVRLIRDQHTNIGKGFGYVNF 226
S G +++VR++RD T +GKGF YV F
Sbjct: 370 SRGNVESVRVVRDPITRVGKGFAYVQF 396
>gi|331228813|ref|XP_003327073.1| hypothetical protein PGTG_08850 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309306063|gb|EFP82654.1| hypothetical protein PGTG_08850 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 637
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 45/128 (35%), Positives = 66/128 (51%), Gaps = 22/128 (17%)
Query: 100 YVRFKNLESVEKALEM-NGHVIDEHTIRVD-------KALTTTK---------SNSHSIF 142
Y+ F+ E +KA+E NG +D T++VD +A K + S ++F
Sbjct: 403 YIDFETCEGAQKAIETKNGTELDGRTLKVDLSAPRAERAPAENKRDFSKEELSAESTTLF 462
Query: 143 IGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESC- 201
+GN+PF A ++ + + F G++++VRL D T KGFGYV F A E R A E
Sbjct: 463 VGNLPFSATQDSVWEIFAEYGDVNSVRLPTDPETQRVKGFGYVEF-ATLESARAAVEKGR 521
Query: 202 GE---IDN 206
GE IDN
Sbjct: 522 GEGVYIDN 529
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 31/47 (65%)
Query: 141 IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 187
+++G + + + E L+ FESCG I + R+I D+ T KGFGY++F
Sbjct: 360 VYVGGLSWNVDSEWLKSEFESCGPIVDARVITDRDTQKSKGFGYIDF 406
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 29/44 (65%)
Query: 183 GYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 226
G +++ + E L+ FESCG I + R+I D+ T KGFGY++F
Sbjct: 363 GGLSWNVDSEWLKSEFESCGPIVDARVITDRDTQKSKGFGYIDF 406
>gi|402873600|ref|XP_003900659.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A/B [Papio
anubis]
Length = 311
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 62/115 (53%), Gaps = 2/115 (1%)
Query: 85 IKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKSNSHSIFIG 144
IKM+ + R+ ++ FK+ SVEK L+ H +D I KA+ K IF+G
Sbjct: 101 IKMDP-NTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKKAMAMKKDPVKKIFVG 159
Query: 145 NIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
+ EA EE++R+ F GEI+ + L D N +GF ++ FK EEE ++K E
Sbjct: 160 GLNPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFK-EEEPVKKVLE 213
>gi|443919574|gb|ELU39701.1| RNA recognition motif domain-containing protein [Rhizoctonia solani
AG-1 IA]
Length = 716
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 60/117 (51%), Gaps = 16/117 (13%)
Query: 99 AYVRFKNLESVEKALE-MNGHVIDEHTIRVD-----------KALTTTKSNSH---SIFI 143
AYV F + +KA+E MNG ID + VD +A S S ++F+
Sbjct: 154 AYVEFSSPAEAQKAVEEMNGKQIDGREVNVDISQPRQPNPEKRAQVFGDSESQPSTTLFV 213
Query: 144 GNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFES 200
GN+ + E+ L AF G++ +VRL DQ + KGFGYV F ++E KA+E+
Sbjct: 214 GNLSWNTTEDGLWTAFGEFGDVTHVRLPTDQESGKPKGFGYVEF-GDQEGATKAYEA 269
Score = 43.5 bits (101), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 44/80 (55%), Gaps = 2/80 (2%)
Query: 129 KALTTTKSN-SHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 187
KA T T++ S+++F+G + + + + L + F+ CG + R+ D+++ +GF YV F
Sbjct: 99 KAKTDTEAGESNTVFVGRLSWNVDNDWLAQEFQGCGTVVAARVQMDRNSGKSRGFAYVEF 158
Query: 188 KAEEEELRKAFESCG-EIDN 206
+ E + E G +ID
Sbjct: 159 SSPAEAQKAVEEMNGKQIDG 178
>gi|410343159|gb|JAA40526.1| heterogeneous nuclear ribonucleoprotein A/B [Pan troglodytes]
Length = 332
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 63/115 (54%), Gaps = 2/115 (1%)
Query: 85 IKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKSNSHSIFIG 144
IKM+ + R+ ++ FK+ SVEK L+ H +D I KA+ K+ IF+G
Sbjct: 101 IKMDP-NTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKKAMAMKKAPVKKIFVG 159
Query: 145 NIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
+ EA EE++R+ F GEI+ + L D N +GF ++ FK EEE ++K E
Sbjct: 160 GLNPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFK-EEEPVKKVLE 213
>gi|392579826|gb|EIW72953.1| hypothetical protein TREMEDRAFT_72942 [Tremella mesenterica DSM
1558]
Length = 475
Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 57/116 (49%), Gaps = 16/116 (13%)
Query: 100 YVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTT---------------KSNSHSIFIG 144
+VRFK E KA+ M GH ID IR D A T + + ++++G
Sbjct: 257 FVRFKTAEEAAKAVAMTGHEIDGRAIRCDFAAEKTDNPVERRAQKFNDQRSAPAATLYLG 316
Query: 145 NIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFES 200
+ ++ E+ + +AF G+I V L D+ T KGFGYV F A+ ++ A E+
Sbjct: 317 GLSYDLNEDAVYEAFGDFGDIQRVSLPTDRETGAPKGFGYVEF-ADVDQATAALEA 371
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 51/103 (49%), Gaps = 6/103 (5%)
Query: 114 EMNGH----VIDEHTIRVDKALTTTKSN-SHSIFIGNIPFEAEEEELRKAFESCGEIDNV 168
E+NGH E K+ T ++ + ++++G + + + E L F+SCGE+
Sbjct: 182 EINGHGKRKADQEAQAPAKKSRTDGEAEPTANVYVGGLSWNVDNEWLASEFQSCGEVVEA 241
Query: 169 RLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIR 211
R++ D KGFG+V FK EE + + EID R IR
Sbjct: 242 RVMFDHQNQKSKGFGFVRFKTAEEAAKAVAMTGHEIDG-RAIR 283
Score = 39.7 bits (91), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 27/47 (57%)
Query: 183 GYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKVS 229
G +++ + E L F+SCGE+ R++ D KGFG+V FK +
Sbjct: 217 GGLSWNVDNEWLASEFQSCGEVVEARVMFDHQNQKSKGFGFVRFKTA 263
>gi|55956921|ref|NP_004490.2| heterogeneous nuclear ribonucleoprotein A/B isoform b [Homo
sapiens]
gi|426351246|ref|XP_004043166.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A/B isoform 2
[Gorilla gorilla gorilla]
gi|12803583|gb|AAH02625.1| Heterogeneous nuclear ribonucleoprotein A/B [Homo sapiens]
gi|13528732|gb|AAH04561.1| Heterogeneous nuclear ribonucleoprotein A/B [Homo sapiens]
gi|13905354|gb|AAH01616.1| Heterogeneous nuclear ribonucleoprotein A/B [Homo sapiens]
gi|14424683|gb|AAH09359.1| Heterogeneous nuclear ribonucleoprotein A/B [Homo sapiens]
gi|119574228|gb|EAW53843.1| heterogeneous nuclear ribonucleoprotein A/B, isoform CRA_b [Homo
sapiens]
gi|119574229|gb|EAW53844.1| heterogeneous nuclear ribonucleoprotein A/B, isoform CRA_b [Homo
sapiens]
gi|119574230|gb|EAW53845.1| heterogeneous nuclear ribonucleoprotein A/B, isoform CRA_b [Homo
sapiens]
gi|193786114|dbj|BAG51397.1| unnamed protein product [Homo sapiens]
gi|208966452|dbj|BAG73240.1| heterogeneous nuclear ribonucleoprotein A/B [synthetic construct]
Length = 285
Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 62/115 (53%), Gaps = 2/115 (1%)
Query: 85 IKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKSNSHSIFIG 144
IKM+ + R+ ++ FK+ SVEK L+ H +D I KA+ K IF+G
Sbjct: 101 IKMDP-NTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKKAMAMKKDPVKKIFVG 159
Query: 145 NIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
+ EA EE++R+ F GEI+ + L D N +GF ++ FK EEE ++K E
Sbjct: 160 GLNPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFK-EEEPVKKVLE 213
>gi|410225698|gb|JAA10068.1| heterogeneous nuclear ribonucleoprotein A/B [Pan troglodytes]
gi|410260868|gb|JAA18400.1| heterogeneous nuclear ribonucleoprotein A/B [Pan troglodytes]
gi|410299216|gb|JAA28208.1| heterogeneous nuclear ribonucleoprotein A/B [Pan troglodytes]
Length = 285
Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 62/115 (53%), Gaps = 2/115 (1%)
Query: 85 IKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKSNSHSIFIG 144
IKM+ + R+ ++ FK+ SVEK L+ H +D I KA+ K IF+G
Sbjct: 101 IKMDP-NTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKKAMAMKKDPVKKIFVG 159
Query: 145 NIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
+ EA EE++R+ F GEI+ + L D N +GF ++ FK EEE ++K E
Sbjct: 160 GLNPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFK-EEEPVKKVLE 213
>gi|348677689|gb|EGZ17506.1| hypothetical protein PHYSODRAFT_501188 [Phytophthora sojae]
Length = 293
Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 66/125 (52%), Gaps = 17/125 (13%)
Query: 99 AYVRFKNLESVEKALEMNGHVI---------DEHTIRVDKAL------TTTKS--NSHSI 141
A+V F + +++KAL+++G + E V+ AL TT K+ ++
Sbjct: 112 AHVVFDDEAALKKALKLDGQYLFNRYLSIRRAEAPRAVEMALKEKNQNTTKKAVKGCRTV 171
Query: 142 FIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESC 201
FI +P+E EE +R+A SCG I +VRL HT KGFGYV F +E+E L A S
Sbjct: 172 FIKQLPYEVEEGTIREALASCGTITSVRLPIWNHTKKLKGFGYVEFSSEDEALAAARRSG 231
Query: 202 GEIDN 206
+I +
Sbjct: 232 MKIGD 236
Score = 43.5 bits (101), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 140 SIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
++++ IP+ A E +L F SCG + VR+ R Q + +G+ +V F +E L+KA +
Sbjct: 69 TVYVEGIPYRANEGDLVTHFSSCGTVREVRMPRYQDSGKPRGYAHVVFD-DEAALKKALK 127
Query: 200 SCGE 203
G+
Sbjct: 128 LDGQ 131
Score = 41.2 bits (95), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 25/40 (62%)
Query: 187 FKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 226
++ EE +R+A SCG I +VRL HT KGFGYV F
Sbjct: 178 YEVEEGTIREALASCGTITSVRLPIWNHTKKLKGFGYVEF 217
>gi|327305109|ref|XP_003237246.1| nucleolar protein 12 [Trichophyton rubrum CBS 118892]
gi|326460244|gb|EGD85697.1| nucleolar protein 12 [Trichophyton rubrum CBS 118892]
Length = 538
Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 87/171 (50%), Gaps = 22/171 (12%)
Query: 63 EVETVRFRSVPVADITLPRKACIKMNKVHEKRT-NMNAYVRFKNLESVEKALEMNGHVID 121
++E++RFRS + LPR+A ++ + T NAYV + + +KAL++NG ++
Sbjct: 230 KIESLRFRSTAFSSTALPRRAAYAKKELMDSTTKGTNAYVVYSTALAAKKALKLNGTMVL 289
Query: 122 EHTIRVDKALTTTK-SNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGK 180
+ IRVD ++ +F+GN+ F EE + E GE+ + ++
Sbjct: 290 DRHIRVDSVSKPAPVDHTRCVFVGNLGFVDEETQ---PAEQDGEVKKKKKAA-AAADV-- 343
Query: 181 GFGYVNFKAEEEELRKAF-ESCGE---IDNVRLIRDQHTNIGKGFGYVNFK 227
EE L + F + CG +++VR++RD+ T +GKGF YV FK
Sbjct: 344 ----------EEGLWRTFNDHCGGEGVVESVRVVRDRLTRVGKGFAYVQFK 384
>gi|302828556|ref|XP_002945845.1| hypothetical protein VOLCADRAFT_54847 [Volvox carteri f.
nagariensis]
gi|300268660|gb|EFJ52840.1| hypothetical protein VOLCADRAFT_54847 [Volvox carteri f.
nagariensis]
Length = 220
Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 60/137 (43%), Gaps = 40/137 (29%)
Query: 130 ALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF-- 187
A T ++S +F+GN+ ++A E+++RK F+ CG+I NVR+ D T +GF +V F
Sbjct: 52 AATNGGTDSTRVFVGNLSWKATEDDVRKHFKDCGKIVNVRMGVDPETGRSRGFAHVEFGD 111
Query: 188 ----------------------------------KAEEEELRKAFE----SCGEIDNVRL 209
E+E+R A E CG I ++RL
Sbjct: 112 AAQAKKAVSKAGTEIDGRAIKVEVTQPRPQSFGGGGREDEIRSALEEVFGGCGGIKSIRL 171
Query: 210 IRDQHTNIGKGFGYVNF 226
D+ KGF Y+ F
Sbjct: 172 PSDREAGTLKGFAYIEF 188
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 51/106 (48%), Gaps = 13/106 (12%)
Query: 94 RTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKSNSHSIFIGNIPFEAEEE 153
R+ A+V F + +KA+ G ID I+V+ +T + S F G E+
Sbjct: 100 RSRGFAHVEFGDAAQAKKAVSKAGTEIDGRAIKVE--VTQPRPQS---FGGG----GRED 150
Query: 154 ELRKAFE----SCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELR 195
E+R A E CG I ++RL D+ KGF Y+ F + E ++R
Sbjct: 151 EIRSALEEVFGGCGGIKSIRLPSDREAGTLKGFAYIEFDSTEAKVR 196
>gi|395861189|ref|XP_003802876.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A/B [Otolemur
garnettii]
Length = 332
Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 62/115 (53%), Gaps = 2/115 (1%)
Query: 85 IKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKSNSHSIFIG 144
IKM+ + R+ ++ FK+ SVEK L+ H +D I KA+ K IF+G
Sbjct: 101 IKMD-PNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKKAMAMKKDPVKKIFVG 159
Query: 145 NIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
+ EA EE++R+ F GEI+ + L D N +GF ++ FK EEE ++K E
Sbjct: 160 GLNPEATEEKIREYFGDFGEIEAIELPMDPKLNKRRGFVFITFK-EEEPVKKVLE 213
>gi|380786855|gb|AFE65303.1| heterogeneous nuclear ribonucleoprotein A/B isoform b [Macaca
mulatta]
gi|383409141|gb|AFH27784.1| heterogeneous nuclear ribonucleoprotein A/B isoform b [Macaca
mulatta]
gi|384940568|gb|AFI33889.1| heterogeneous nuclear ribonucleoprotein A/B isoform b [Macaca
mulatta]
Length = 285
Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 62/115 (53%), Gaps = 2/115 (1%)
Query: 85 IKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKSNSHSIFIG 144
IKM+ + R+ ++ FK+ SVEK L+ H +D I KA+ K IF+G
Sbjct: 101 IKMD-PNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKKAMAMKKDPVKKIFVG 159
Query: 145 NIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
+ EA EE++R+ F GEI+ + L D N +GF ++ FK EEE ++K E
Sbjct: 160 GLNPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFK-EEEPVKKVLE 213
>gi|444318191|ref|XP_004179753.1| hypothetical protein TBLA_0C04360 [Tetrapisispora blattae CBS 6284]
gi|387512794|emb|CCH60234.1| hypothetical protein TBLA_0C04360 [Tetrapisispora blattae CBS 6284]
Length = 403
Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 71/142 (50%), Gaps = 21/142 (14%)
Query: 90 VHEKRTNMN---AYVRFKNLESVEKAL-EMNGHVIDEHTIRVDKALTTTKSN-------- 137
++EK T+ + YV FKN EKA+ EM G ID I D + + SN
Sbjct: 193 IYEKGTDRSRGYGYVDFKNKTFAEKAIKEMQGKEIDGRPINCDMSTSKPASNGGDRAKKF 252
Query: 138 -------SHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAE 190
S ++F+GN+ F+A+ + + + F GEI +VR+ T KGFGYV + +
Sbjct: 253 GDTPSEPSETLFLGNLSFDADRDNIYEVFSKYGEIISVRIPTHPETEQPKGFGYVQY-GD 311
Query: 191 EEELRKAFESC-GEIDNVRLIR 211
E +KA ++ GE N R +R
Sbjct: 312 VESAKKALDALQGEYINNRPVR 333
Score = 43.1 bits (100), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 37/68 (54%)
Query: 121 DEHTIRVDKALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGK 180
DE + K +IF+G + + ++E L+ FE G + + R+I ++ T+ +
Sbjct: 143 DEESSESKKQKPDESEEPATIFVGRLSWSIDDEWLKTEFEPIGGVLSARVIYEKGTDRSR 202
Query: 181 GFGYVNFK 188
G+GYV+FK
Sbjct: 203 GYGYVDFK 210
>gi|194387362|dbj|BAG60045.1| unnamed protein product [Homo sapiens]
Length = 323
Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 62/115 (53%), Gaps = 2/115 (1%)
Query: 85 IKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKSNSHSIFIG 144
IKM+ + R+ ++ FK+ SVEK L+ H +D I KA+ K IF+G
Sbjct: 92 IKMDP-NTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKKAMAMKKDPVKKIFVG 150
Query: 145 NIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
+ EA EE++R+ F GEI+ + L D N +GF ++ FK EEE ++K E
Sbjct: 151 GLNPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFK-EEEPVKKVLE 204
>gi|1362732|pir||S56750 single stranded D box binding factor 2 - chicken
Length = 353
Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 57/106 (53%), Gaps = 1/106 (0%)
Query: 94 RTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKSNSHSIFIGNIPFEAEEE 153
R+ ++ FK SVEK LE H +D I KA+ K IF+G + EA EE
Sbjct: 129 RSRGFGFILFKEPGSVEKVLEQKEHRLDGRLIDPKKAMAMKKDPVKKIFVGGLNPEATEE 188
Query: 154 ELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
++R+ F GEI+ + L D TN +GF ++ FK EE+ ++K E
Sbjct: 189 KIREYFGEFGEIEAIELPMDPKTNKRRGFVFITFK-EEDPVKKVLE 233
Score = 38.9 bits (89), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 29/141 (20%), Positives = 57/141 (40%), Gaps = 45/141 (31%)
Query: 132 TTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK--- 188
+ + ++ +F+G + ++ +++L+ F GE+ + + D +T +GFG++ FK
Sbjct: 83 SKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVTDCTIKMDPNTGRSRGFGFILFKEPG 142
Query: 189 ------------------------------------------AEEEELRKAFESCGEIDN 206
A EE++R+ F GEI+
Sbjct: 143 SVEKVLEQKEHRLDGRLIDPKKAMAMKKDPVKKIFVGGLNPEATEEKIREYFGEFGEIEA 202
Query: 207 VRLIRDQHTNIGKGFGYVNFK 227
+ L D TN +GF ++ FK
Sbjct: 203 IELPMDPKTNKRRGFVFITFK 223
>gi|452848411|gb|EME50343.1| hypothetical protein DOTSEDRAFT_69017 [Dothistroma septosporum
NZE10]
Length = 516
Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 68/143 (47%), Gaps = 26/143 (18%)
Query: 94 RTNMNAYVRFKNLESVEKALEM-NGHVIDEHTIRVDKALTTTKSN--------------- 137
R+ YV F++ + KALE +G+ +D +RVD + N
Sbjct: 292 RSKGYGYVEFESADDAAKALEARHGYTLDNRELRVDLGTPRAQRNDGQTPQQRSNDRQKQ 351
Query: 138 --------SHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKA 189
S ++F+GNI F+A ++ + + F+ G I+ VRL D+ T KGFGYV F +
Sbjct: 352 YGDTPSQPSATLFVGNISFDATQDMVTEVFQEYGSINAVRLPTDRETGAPKGFGYVEF-S 410
Query: 190 EEEELRKAFESCGEID-NVRLIR 211
EE + A E+ +D R IR
Sbjct: 411 SIEEAKSAMENLTGVDIAGRPIR 433
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
Query: 129 KALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK 188
K T + + ++F+GN+ + +EE L + FE G I VR+I D+ + KG+GYV F+
Sbjct: 243 KTKTEDPAATGNLFVGNLSWNVDEEWLTREFEEFGAIKAVRVITDRDSGRSKGYGYVEFE 302
Query: 189 AEEEELRKAFES 200
+ ++ KA E+
Sbjct: 303 SADDAA-KALEA 313
Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 27/44 (61%)
Query: 183 GYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 226
G +++ +EE L + FE G I VR+I D+ + KG+GYV F
Sbjct: 258 GNLSWNVDEEWLTREFEEFGAIKAVRVITDRDSGRSKGYGYVEF 301
>gi|170055835|ref|XP_001863758.1| nucleolysin tia-1 [Culex quinquefasciatus]
gi|167875726|gb|EDS39109.1| nucleolysin tia-1 [Culex quinquefasciatus]
Length = 456
Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 62/112 (55%), Gaps = 9/112 (8%)
Query: 90 VHEKRTNMNAYVRFKNLESVEKALE-MNGHVIDEHTIRVDKALT------TTKSNSHSIF 142
+ E ++ A++ + + +S + AL MN + + I+V+ A + T S H IF
Sbjct: 40 IREASSDPYAFIEYASHQSAQTALAAMNKRLFLKKEIKVNWATSPGNQPKTDTSQHHHIF 99
Query: 143 IGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF--KAEEE 192
+G++ E E E LR+AF GEI N R++RD T KG+ +V+F KAE E
Sbjct: 100 VGDLSPEIETETLREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAE 151
>gi|12835985|dbj|BAB23448.1| unnamed protein product [Mus musculus]
Length = 590
Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 63/116 (54%), Gaps = 17/116 (14%)
Query: 99 AYVRFKNLESVEKAL-EMNGHVIDEHTIRV-------DKALTTT-------KSNSHSIFI 143
+V +K E +KAL ++ GH +D H + V ALT+T K + I +
Sbjct: 407 GFVEYKKPEQAQKALKQLQGHTVDGHKLEVRISERATKPALTSTRKKQVPKKQTTSKILV 466
Query: 144 GNIPFEAEEEELRKAFESCGEIDNVRLIRDQ-HTNIGKGFGYVNFKAEEEELRKAF 198
NIPF+A + E+R+ F + GE+ VRL + T +GFG+V+F +++ +KAF
Sbjct: 467 RNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDF-ITKQDAKKAF 521
Score = 38.9 bits (89), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 38/75 (50%)
Query: 136 SNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELR 195
++S +F+ N+ + + EE+L K F + G + + D T KGF +V F E ++
Sbjct: 35 ADSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVK 94
Query: 196 KAFESCGEIDNVRLI 210
E G++ R++
Sbjct: 95 AYAEVDGQVFQGRML 109
>gi|431914230|gb|ELK15488.1| Putative RNA-binding protein 19 [Pteropus alecto]
Length = 949
Score = 63.2 bits (152), Expect = 9e-08, Method: Composition-based stats.
Identities = 38/118 (32%), Positives = 66/118 (55%), Gaps = 17/118 (14%)
Query: 99 AYVRFKNLESVEKAL-EMNGHVIDEHTIRV-------DKALTTT-------KSNSHSIFI 143
+V ++ E +KAL ++ GHV+D H + V ALT+T K + I +
Sbjct: 779 GFVEYRKPEQAQKALKQLQGHVVDSHKLEVRISERATKPALTSTRKKQVARKQTTSKILV 838
Query: 144 GNIPFEAEEEELRKAFESCGEIDNVRLIRDQH-TNIGKGFGYVNFKAEEEELRKAFES 200
NIPF+A+ E+R+ F + GE+ VRL + T +GFG+V+F ++++ ++AF +
Sbjct: 839 RNIPFQADRREIRELFSTFGELKTVRLPKKMAGTGTHRGFGFVDFLSKQDA-KRAFNA 895
Score = 47.0 bits (110), Expect = 0.007, Method: Composition-based stats.
Identities = 48/190 (25%), Positives = 76/190 (40%), Gaps = 36/190 (18%)
Query: 66 TVRFRSVP-------VADITLPRKACIKMNKVHEKRTNMNAY--VRFKNLESVEKALEMN 116
TV+ R P V + P K + + V N Y V F + E V+KAL+ N
Sbjct: 299 TVKLRGAPFNVTEKNVVEFLAPLKP-VAIRIVRNAHGNKTGYIFVDFSSEEEVKKALKCN 357
Query: 117 GHVIDEHTIRV--DKALTTTK------------------------SNSHSIFIGNIPFEA 150
+ I V +K + TTK ++S +F+ N+P+ +
Sbjct: 358 RDYMGGRYIEVFREKNVPTTKGPPKNSTKAWQGRTLGENEEEEDLADSGRLFVRNLPYTS 417
Query: 151 EEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLI 210
EE+L K F G + + D T KGF +V F E ++ E G++ R++
Sbjct: 418 SEEDLEKIFSRYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRML 477
Query: 211 RDQHTNIGKG 220
+ I KG
Sbjct: 478 HVLPSTIKKG 487
>gi|68062875|ref|XP_673446.1| hypothetical protein [Plasmodium berghei strain ANKA]
gi|56491300|emb|CAI01718.1| conserved hypothetical protein [Plasmodium berghei]
Length = 196
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 67/127 (52%), Gaps = 2/127 (1%)
Query: 64 VETVRFRSVPVAD-ITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDE 122
VE++RFRS+P+ + +K I + K + + N NA +R K E + L+ NG V +
Sbjct: 33 VESIRFRSLPLEEKYANKKKLGIMLKKFTDVKDNKNALIRMKRKEDISLLLDKNGTVYNG 92
Query: 123 HTIRVDKALTTTK-SNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKG 181
H +R++K S S+ + N+ E++L + F+ EI VR++RD + +G
Sbjct: 93 HVLRINKCGDQNYFSRKKSVCLKNLDRSLSEKDLYELFKDIDEIKGVRILRDVENSQSRG 152
Query: 182 FGYVNFK 188
++ FK
Sbjct: 153 VAFILFK 159
>gi|171695272|ref|XP_001912560.1| hypothetical protein [Podospora anserina S mat+]
gi|170947878|emb|CAP60042.1| unnamed protein product [Podospora anserina S mat+]
Length = 516
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 87/182 (47%), Gaps = 15/182 (8%)
Query: 49 HALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTN-MNAYVRFKNLE 107
H S + P +VE++RFRS A +P++A +V E T NAY + E
Sbjct: 165 HLASILDPKADPPQKVESIRFRSTAFATAAIPKRAAFIKKEVMEATTKCTNAYAVYSTPE 224
Query: 108 SVEKALE-MNGHVIDEHTIRVDK-ALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEI 165
+V A++ +NG V+ + +RVD A + +F+GN+ F +E L
Sbjct: 225 AVRLAVQKLNGTVVLDRHLRVDSVAHPAPVDHKRCVFVGNLGFVDDETVL---------- 274
Query: 166 DNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAF-ESCGEIDNVRLIRDQHTNIGKGFGYV 224
NV++ + + K EE L + F + G++++VR++RD T +GKG YV
Sbjct: 275 -NVKVDDEGNQTTTKKKRTKQPMDVEEGLWRVFGKEAGKVESVRVVRDNVTRVGKGIAYV 333
Query: 225 NF 226
F
Sbjct: 334 QF 335
>gi|62898411|dbj|BAD97145.1| heterogeneous nuclear ribonucleoprotein AB isoform a variant [Homo
sapiens]
Length = 332
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 62/115 (53%), Gaps = 2/115 (1%)
Query: 85 IKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKSNSHSIFIG 144
IKM+ + R+ ++ FK+ SVEK L+ H +D I KA+ K IF+G
Sbjct: 101 IKMD-PNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKKAMAMKKDPVKKIFVG 159
Query: 145 NIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
+ EA EE++R+ F GEI+ + L D N +GF ++ FK EEE ++K E
Sbjct: 160 GLNPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFK-EEEPVKKVLE 213
>gi|344265339|ref|XP_003404742.1| PREDICTED: LOW QUALITY PROTEIN: heterogeneous nuclear
ribonucleoprotein A/B-like [Loxodonta africana]
Length = 332
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 63/115 (54%), Gaps = 2/115 (1%)
Query: 85 IKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKSNSHSIFIG 144
IKM+ + R+ ++ FK+ SVEK L+ H +D I KA+ K IF+G
Sbjct: 101 IKMDP-NTGRSRGFGFILFKDATSVEKVLDQKEHRLDGRVIDPKKAMAMKKDPVKKIFVG 159
Query: 145 NIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
+ EA EE++R+ F GEI+ + L D +N +GF ++ +K EEE ++K E
Sbjct: 160 GLNPEATEEKIREYFGEFGEIEAIELPMDPKSNKRRGFVFITYK-EEEPVKKVLE 213
>gi|428170953|gb|EKX39874.1| hypothetical protein GUITHDRAFT_154318 [Guillardia theta CCMP2712]
Length = 270
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 62/130 (47%), Gaps = 18/130 (13%)
Query: 99 AYVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKSNSH-----------------SI 141
++ FK+ +SV KA+ M+G + ++V +A T S +I
Sbjct: 68 GFLTFKDADSVAKAVAMDGQELMGRWVKVKEADGTEGSAGKKPFTPNREPKPKPDGCTTI 127
Query: 142 FIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESC 201
F+GN+ ++ +E+ +R F CGE+ NVR D+ T KGFG+V F AE A
Sbjct: 128 FMGNLSWDVDEDTIRSFFADCGEVVNVRFATDRETGDFKGFGHVQF-AESSATDLAVAKG 186
Query: 202 GEIDNVRLIR 211
GE R IR
Sbjct: 187 GEFVAGRAIR 196
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 35/53 (66%), Gaps = 1/53 (1%)
Query: 136 SNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK 188
+ +F+G +PF+A E++++K FESCG I+N+ L + + GFG++ FK
Sbjct: 22 GDKRRVFLGGLPFKATEKDIKKMFESCGAIENIELPMNADSRPA-GFGFLTFK 73
Score = 41.2 bits (95), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 182 FGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKVSFTTLSSI 236
G + FKA E++++K FESCG I+N+ L + + GFG++ FK + + ++
Sbjct: 29 LGGLPFKATEKDIKKMFESCGAIENIELPMNADSRPA-GFGFLTFKDADSVAKAV 82
>gi|410225700|gb|JAA10069.1| heterogeneous nuclear ribonucleoprotein A/B [Pan troglodytes]
gi|410260870|gb|JAA18401.1| heterogeneous nuclear ribonucleoprotein A/B [Pan troglodytes]
gi|410299218|gb|JAA28209.1| heterogeneous nuclear ribonucleoprotein A/B [Pan troglodytes]
Length = 332
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 62/115 (53%), Gaps = 2/115 (1%)
Query: 85 IKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKSNSHSIFIG 144
IKM+ + R+ ++ FK+ SVEK L+ H +D I KA+ K IF+G
Sbjct: 101 IKMDP-NTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKKAMAMKKDPVKKIFVG 159
Query: 145 NIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
+ EA EE++R+ F GEI+ + L D N +GF ++ FK EEE ++K E
Sbjct: 160 GLNPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFK-EEEPVKKVLE 213
>gi|55956919|ref|NP_112556.2| heterogeneous nuclear ribonucleoprotein A/B isoform a [Homo
sapiens]
gi|426351244|ref|XP_004043165.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A/B isoform 1
[Gorilla gorilla gorilla]
gi|21757498|dbj|BAC05134.1| unnamed protein product [Homo sapiens]
gi|33874222|gb|AAH36708.1| Heterogeneous nuclear ribonucleoprotein A/B [Homo sapiens]
gi|119574227|gb|EAW53842.1| heterogeneous nuclear ribonucleoprotein A/B, isoform CRA_a [Homo
sapiens]
Length = 332
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 62/115 (53%), Gaps = 2/115 (1%)
Query: 85 IKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKSNSHSIFIG 144
IKM+ + R+ ++ FK+ SVEK L+ H +D I KA+ K IF+G
Sbjct: 101 IKMDP-NTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKKAMAMKKDPVKKIFVG 159
Query: 145 NIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
+ EA EE++R+ F GEI+ + L D N +GF ++ FK EEE ++K E
Sbjct: 160 GLNPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFK-EEEPVKKVLE 213
>gi|348551765|ref|XP_003461700.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A/B-like [Cavia
porcellus]
Length = 327
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 62/115 (53%), Gaps = 2/115 (1%)
Query: 85 IKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKSNSHSIFIG 144
IKM+ + R+ ++ FK+ SVEK L+ H +D I KA+ K IF+G
Sbjct: 101 IKMD-PNTGRSRGFGFILFKDATSVEKVLDQKEHRLDGRVIDPKKAMAMKKDPVKKIFVG 159
Query: 145 NIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
+ EA EE++R+ F GEI+ + L D N +GF ++ FK EEE ++K E
Sbjct: 160 GLNPEATEEKIREYFGDFGEIEAIELPMDPKLNKRRGFVFITFK-EEEPVKKVLE 213
>gi|361128049|gb|EHL00002.1| putative Polyadenylate-binding protein, cytoplasmic and nuclear
[Glarea lozoyensis 74030]
Length = 783
Score = 62.8 bits (151), Expect = 1e-07, Method: Composition-based stats.
Identities = 34/103 (33%), Positives = 58/103 (56%), Gaps = 10/103 (9%)
Query: 99 AYVRFKNLESVEKALE-MNGHVIDE-------HTIRVDK--ALTTTKSNSHSIFIGNIPF 148
+V ++ E+ +A++ +NG +++E H + D+ K+N +I++ NIP
Sbjct: 193 GFVHYETDEAASQAIKHVNGMLLNEKKVFVGHHIPKKDRQSKFEEMKANFTNIYVKNIPV 252
Query: 149 EAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEE 191
EA +EE R+ FE G++ + L RDQ T +GFG+VNF E
Sbjct: 253 EATDEEFRELFEKFGDVTSASLARDQDTGKSRGFGFVNFINHE 295
Score = 49.3 bits (116), Expect = 0.001, Method: Composition-based stats.
Identities = 48/195 (24%), Positives = 77/195 (39%), Gaps = 64/195 (32%)
Query: 93 KRTNMNAYVRFKNLESVEKALE-MNGHVIDEHTIRV-----DKALTTTKSNSHSIFIGNI 146
+R+ AYV + EKALE +N +I R+ D AL K+ ++FI N+
Sbjct: 100 RRSLGYAYVNYNTTTDGEKALEELNYTLIKGRPCRIMWSQRDPALR--KTGQGNVFIKNL 157
Query: 147 PFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYV--------------------- 185
+ + L F + G I + ++ +D+ + KG+G+V
Sbjct: 158 DTAIDNKALHDTFAAFGNILSCKVAQDE-SGASKGYGFVHYETDEAASQAIKHVNGMLLN 216
Query: 186 ------------------------NF----------KAEEEELRKAFESCGEIDNVRLIR 211
NF +A +EE R+ FE G++ + L R
Sbjct: 217 EKKVFVGHHIPKKDRQSKFEEMKANFTNIYVKNIPVEATDEEFRELFEKFGDVTSASLAR 276
Query: 212 DQHTNIGKGFGYVNF 226
DQ T +GFG+VNF
Sbjct: 277 DQDTGKSRGFGFVNF 291
>gi|327265526|ref|XP_003217559.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A/B-like [Anolis
carolinensis]
Length = 367
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 62/115 (53%), Gaps = 2/115 (1%)
Query: 85 IKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKSNSHSIFIG 144
IKM+ + R+ ++ FK SV+K LE H +D I KA+ K IF+G
Sbjct: 143 IKMD-PNTGRSRGFGFILFKEAASVDKVLEQKEHKLDGRVIDPKKAMAMKKDPVKKIFVG 201
Query: 145 NIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
+ EA EE++R+ F GEI+ + L D TN +GF ++ FK EE+ ++K E
Sbjct: 202 GLNPEAAEEKIREYFGEFGEIEAIELPMDPKTNKRRGFVFITFK-EEDPVKKILE 255
Score = 38.9 bits (89), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 29/141 (20%), Positives = 57/141 (40%), Gaps = 45/141 (31%)
Query: 132 TTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK--- 188
+ + ++ +F+G + ++ +++L+ F GE+ + + D +T +GFG++ FK
Sbjct: 105 SKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVTDCTIKMDPNTGRSRGFGFILFKEAA 164
Query: 189 ------------------------------------------AEEEELRKAFESCGEIDN 206
A EE++R+ F GEI+
Sbjct: 165 SVDKVLEQKEHKLDGRVIDPKKAMAMKKDPVKKIFVGGLNPEAAEEKIREYFGEFGEIEA 224
Query: 207 VRLIRDQHTNIGKGFGYVNFK 227
+ L D TN +GF ++ FK
Sbjct: 225 IELPMDPKTNKRRGFVFITFK 245
>gi|4378711|gb|AAD19638.1| nucleic acid binding factor pRM10 [Rattus norvegicus]
Length = 298
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 62/115 (53%), Gaps = 2/115 (1%)
Query: 85 IKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKSNSHSIFIG 144
IKM+ + R+ ++ FK+ SVEK L+ H +D I KA+ K IF+G
Sbjct: 119 IKMDP-NTGRSRGFGFILFKDSSSVEKVLDQKEHRLDGRVIDPKKAMAMKKDPVKKIFVG 177
Query: 145 NIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
+ EA EE++R+ F GEI+ + L D N +GF ++ FK EE+ ++K E
Sbjct: 178 GLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFK-EEDPVKKVLE 231
>gi|383873338|ref|NP_001244741.1| heterogeneous nuclear ribonucleoprotein A/B [Macaca mulatta]
gi|380787211|gb|AFE65481.1| heterogeneous nuclear ribonucleoprotein A/B isoform a [Macaca
mulatta]
gi|383409139|gb|AFH27783.1| heterogeneous nuclear ribonucleoprotein A/B isoform a [Macaca
mulatta]
gi|384940566|gb|AFI33888.1| heterogeneous nuclear ribonucleoprotein A/B isoform a [Macaca
mulatta]
Length = 332
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 62/115 (53%), Gaps = 2/115 (1%)
Query: 85 IKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKSNSHSIFIG 144
IKM+ + R+ ++ FK+ SVEK L+ H +D I KA+ K IF+G
Sbjct: 101 IKMD-PNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKKAMAMKKDPVKKIFVG 159
Query: 145 NIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
+ EA EE++R+ F GEI+ + L D N +GF ++ FK EEE ++K E
Sbjct: 160 GLNPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFK-EEEPVKKVLE 213
>gi|395505200|ref|XP_003756932.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A/B [Sarcophilus
harrisii]
Length = 278
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 63/115 (54%), Gaps = 2/115 (1%)
Query: 85 IKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKSNSHSIFIG 144
IKM+ + R+ ++ FK SV+K L+ H +D I KA+ K IF+G
Sbjct: 30 IKMDP-NTGRSRGFGFILFKESASVDKVLDQKEHRLDGRVIDPKKAMAMKKDPVKKIFVG 88
Query: 145 NIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
+ EA E+++R+ F GEI+++ L D TN +GF ++ FK EE+ ++K E
Sbjct: 89 GLNPEATEDKIREYFGDFGEIESIELPMDPKTNKRRGFVFITFK-EEDPVKKILE 142
>gi|326477104|gb|EGE01114.1| nucleolar protein 12 [Trichophyton equinum CBS 127.97]
Length = 516
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 86/171 (50%), Gaps = 22/171 (12%)
Query: 63 EVETVRFRSVPVADITLPRKACIKMNKVHEKRT-NMNAYVRFKNLESVEKALEMNGHVID 121
++E++RFRS + +PR+A + + T NAYV + + +KAL++NG ++
Sbjct: 206 KIESLRFRSTAFSSTAVPRRAAYAKKDLMDSTTKGTNAYVVYSTALAAKKALKLNGTMVL 265
Query: 122 EHTIRVDKALTTTK-SNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGK 180
+ IRVD ++ +F+GN+ F EE + E GE+ + ++
Sbjct: 266 DRHIRVDSVSKPAPVDHTRCVFVGNLGFVDEETQ---PAEQDGEVKKKKKAA-AAADV-- 319
Query: 181 GFGYVNFKAEEEELRKAF-ESCGE---IDNVRLIRDQHTNIGKGFGYVNFK 227
EE L + F + CG +++VR++RD+ T +GKGF YV FK
Sbjct: 320 ----------EEGLWRTFNDQCGGEGVVESVRVVRDRLTRVGKGFAYVQFK 360
>gi|345311474|ref|XP_001513207.2| PREDICTED: heterogeneous nuclear ribonucleoprotein A/B-like
[Ornithorhynchus anatinus]
Length = 480
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 61/115 (53%), Gaps = 2/115 (1%)
Query: 85 IKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKSNSHSIFIG 144
IKM+ + R+ ++ FK SV+K L+ H +D I KA+ K IF+G
Sbjct: 243 IKMDP-NTGRSRGFGFILFKEAASVDKVLDQKEHRLDGRVIDPKKAMAMKKDPVKKIFVG 301
Query: 145 NIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
+ EA E+++R F GEI+ + L D TN +GF ++ FK EEE ++K E
Sbjct: 302 GLNPEATEDKIRDYFGEFGEIEAIELPMDPKTNKRRGFVFITFK-EEEPVKKILE 355
>gi|405117835|gb|AFR92610.1| single-stranded DNA binding protein [Cryptococcus neoformans var.
grubii H99]
Length = 444
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 55/106 (51%), Gaps = 18/106 (16%)
Query: 99 AYVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKSN-----------------SHSI 141
YV F +L S KA+E +G ID IRV+ A T K N + ++
Sbjct: 240 GYVEFADLGSSAKAIEKDGSEIDGRAIRVNYA-TQRKPNEAAEKRARVFNDKQSPPAETL 298
Query: 142 FIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 187
+IG++ F E+++ +AF G++ +VRL D+ T KGFGYV F
Sbjct: 299 WIGSLSFSVTEDQVYEAFGQHGDVQSVRLPTDRDTGAPKGFGYVQF 344
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 43/72 (59%), Gaps = 3/72 (4%)
Query: 141 IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFES 200
+F+G + + + + L+ FESCGE+ + R++ D+ + +GFGYV F A+ KA E
Sbjct: 198 VFVGQLSWNVDNDWLKSEFESCGEVVSARVVFDRDSQKSRGFGYVEF-ADLGSSAKAIEK 256
Query: 201 CG-EIDNVRLIR 211
G EID R IR
Sbjct: 257 DGSEIDG-RAIR 267
Score = 42.0 bits (97), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 29/44 (65%)
Query: 183 GYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 226
G +++ + + L+ FESCGE+ + R++ D+ + +GFGYV F
Sbjct: 201 GQLSWNVDNDWLKSEFESCGEVVSARVVFDRDSQKSRGFGYVEF 244
>gi|444523821|gb|ELV13633.1| Heterogeneous nuclear ribonucleoproteins A2/B1 [Tupaia chinensis]
Length = 304
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 55/111 (49%), Gaps = 7/111 (6%)
Query: 84 CIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALT---TTKSNSH- 139
C+ M KR+ +V F ++ V+ A+ H ID + +A+ + K +H
Sbjct: 66 CVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHV 125
Query: 140 ---SIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 187
+F+G I + EE LR FE G+ID + +I D+ + +GFG+V F
Sbjct: 126 TVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTF 176
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 54/144 (37%), Gaps = 52/144 (36%)
Query: 135 KSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKA----- 189
K +FIG + FE EE LR +E G++ + ++RD + +GFG+V F +
Sbjct: 33 KEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVD 92
Query: 190 -----------------------------------------------EEEELRKAFESCG 202
EE LR FE G
Sbjct: 93 AAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYG 152
Query: 203 EIDNVRLIRDQHTNIGKGFGYVNF 226
+ID + +I D+ + +GFG+V F
Sbjct: 153 KIDTIEIITDRQSGKKRGFGFVTF 176
>gi|389594851|ref|XP_003722648.1| putative RNA binding protein [Leishmania major strain Friedlin]
gi|323363876|emb|CBZ12882.1| putative RNA binding protein [Leishmania major strain Friedlin]
Length = 455
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 84/176 (47%), Gaps = 11/176 (6%)
Query: 54 VTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKV------HEKRTNMNAYVRFKNLE 107
V +FK G + VR R + ++ + + +V + + + AYV F + +
Sbjct: 177 VEKIFKSCGSITAVRIRCQALEELDEQHQNMGRAVRVLRGEIKKDAKYSATAYVLFDSAK 236
Query: 108 SVEKALEMNGHVIDEHTIRVDKALTTTKS--NSHSIFIGNIPFEAEEEELRKAFESCG-- 163
S+ ALE NG + I V +++ SIF+GN+ + EE++ F+ G
Sbjct: 237 SIASALEKNGLIFHNRHIVVTTMDVESRAYPPETSIFLGNVAYNTTEEDVWSFFQEHGIA 296
Query: 164 EIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGK 219
++ VRL+RD+ T KGFGYV F ++ A E+ G+ N R +R H N K
Sbjct: 297 DVKRVRLVRDRETGDCKGFGYVEF-MHASSVQPAIETRGDKLNGRELRIVHVNKSK 351
Score = 38.1 bits (87), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 31/52 (59%), Gaps = 7/52 (13%)
Query: 137 NSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRL-------IRDQHTNIGKG 181
++ ++F+GN+P + ++ K F+SCG I VR+ + +QH N+G+
Sbjct: 159 DARTVFVGNLPNTIHKRDVEKIFKSCGSITAVRIRCQALEELDEQHQNMGRA 210
>gi|326921905|ref|XP_003207194.1| PREDICTED: heterogeneous nuclear ribonucleoproteins A2/B1-like
[Meleagris gallopavo]
Length = 362
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 55/111 (49%), Gaps = 7/111 (6%)
Query: 84 CIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALT---TTKSNSH- 139
C+ M KR+ +V F ++ V+ A+ H ID + +A+ + K +H
Sbjct: 59 CVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHTIDGRVVEPKRAVAREESGKPGAHV 118
Query: 140 ---SIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 187
+F+G I + EE LR FE G+ID + +I D+ + +GFG+V F
Sbjct: 119 TVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTF 169
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 53/138 (38%), Gaps = 52/138 (37%)
Query: 141 IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKA----------- 189
+FIG + FE EE LR +E G++ + ++RD + +GFG+V F +
Sbjct: 32 LFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAAR 91
Query: 190 -----------------------------------------EEEELRKAFESCGEIDNVR 208
EE LR FE G+ID +
Sbjct: 92 PHTIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIE 151
Query: 209 LIRDQHTNIGKGFGYVNF 226
+I D+ + +GFG+V F
Sbjct: 152 IITDRQSGKKRGFGFVTF 169
>gi|392332679|ref|XP_003752658.1| PREDICTED: probable RNA-binding protein 19 [Rattus norvegicus]
Length = 846
Score = 62.4 bits (150), Expect = 1e-07, Method: Composition-based stats.
Identities = 39/118 (33%), Positives = 65/118 (55%), Gaps = 17/118 (14%)
Query: 99 AYVRFKNLESVEKALE-MNGHVIDEHTIRV-------DKALTTT-------KSNSHSIFI 143
+V +K E +KAL+ + GH++D H + V ALT+T K + I +
Sbjct: 663 GFVEYKKPEQAQKALKRLQGHIVDGHKLEVRISERATKPALTSTRKKQVPKKQTTSKILV 722
Query: 144 GNIPFEAEEEELRKAFESCGEIDNVRLIRDQH-TNIGKGFGYVNFKAEEEELRKAFES 200
NIPF+A + E+R+ F + GE+ VRL + T +GFG+V+F +++ +KAF +
Sbjct: 723 RNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDA-KKAFNA 779
>gi|406700097|gb|EKD03282.1| hypothetical protein A1Q2_02392 [Trichosporon asahii var. asahii
CBS 8904]
Length = 387
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 57/109 (52%), Gaps = 14/109 (12%)
Query: 93 KRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVD-------------KALTTTKSN-S 138
+R+ YV F +++S KA+E G +D +RV+ K +S +
Sbjct: 242 QRSRGFGYVEFADVDSAIKAIEFEGKELDGRAVRVNFANARKPDADKRAKVFNDKRSPPA 301
Query: 139 HSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 187
+++IG++PF+ E+ + + F G++ +VRL D+ T KGFGYV F
Sbjct: 302 DTLWIGSLPFDTTEDHIYETFGEYGDVQSVRLPTDRETGAAKGFGYVTF 350
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 138 SHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKA 197
++++F+G + + + + L F SCGE+ + R++ D+ T +GFGYV F A+ + KA
Sbjct: 203 TNTVFVGGLSWNIDNDWLASEFASCGEVVSARIVLDRDTQRSRGFGYVEF-ADVDSAIKA 261
Query: 198 FESCGEIDNVRLIR 211
E G+ + R +R
Sbjct: 262 IEFEGKELDGRAVR 275
Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 27/44 (61%)
Query: 183 GYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 226
G +++ + + L F SCGE+ + R++ D+ T +GFGYV F
Sbjct: 209 GGLSWNIDNDWLASEFASCGEVVSARIVLDRDTQRSRGFGYVEF 252
>gi|401429538|ref|XP_003879251.1| putative RNA binding protein [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322495501|emb|CBZ30806.1| putative RNA binding protein [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 455
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 82/189 (43%), Gaps = 37/189 (19%)
Query: 54 VTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMN--------------- 98
V +FK G + VR R C + ++ EK NM
Sbjct: 177 VEKIFKSCGSITAVRIR-------------CQALEELDEKHQNMGRAVRVLRGEIKKDAK 223
Query: 99 ----AYVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKS--NSHSIFIGNIPFEAEE 152
AYV F + +S+ ALE NG V + V +++ SIF+GN+ + E
Sbjct: 224 YSATAYVLFDSAKSIASALEKNGLVFHSRHLVVTTMDVESRAYPPETSIFLGNVAYNTTE 283
Query: 153 EELRKAFESCG--EIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLI 210
E++ F+ G ++ VRL+RD+ T KGFGYV F ++ A E+ G+ N R +
Sbjct: 284 EDVWSFFQEHGIADVKRVRLVRDRETGDCKGFGYVEF-MHASSVQPAIETRGDKLNGREL 342
Query: 211 RDQHTNIGK 219
R H N K
Sbjct: 343 RIVHVNKSK 351
>gi|357139508|ref|XP_003571323.1| PREDICTED: 28 kDa ribonucleoprotein, chloroplastic-like
[Brachypodium distachyon]
Length = 288
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 73/145 (50%), Gaps = 16/145 (11%)
Query: 57 MFKPYGEVETVRFRSVPVADITLPRKAC--IKMNKVHEKRTNMNAYVRFKNLESVEKALE 114
+F+PYG V +V P I+ + C + M + RT MNA F +L+ E ++
Sbjct: 120 LFQPYGTVLSVEVSRDPETGIS---RGCGFVTMRSLAAARTAMNALDGF-DLDGREMFVK 175
Query: 115 MNGHVIDEHTIRVDKALTTTKS-------NSHSIFIGNIPFEAEEEELRKAFESCGEIDN 167
+ HV+ R + +L+ T + + I++GN+ + + + LR+ F CG I +
Sbjct: 176 LASHVVSN---RRNPSLSHTAPMKDHIFESPYKIYVGNLAWSVQPQHLRELFTQCGNIVS 232
Query: 168 VRLIRDQHTNIGKGFGYVNFKAEEE 192
RL+ D+ + +G+++F + EE
Sbjct: 233 TRLLTDRKGARNRVYGFLSFSSPEE 257
>gi|392352553|ref|XP_003751242.1| PREDICTED: probable RNA-binding protein 19 [Rattus norvegicus]
Length = 955
Score = 62.4 bits (150), Expect = 2e-07, Method: Composition-based stats.
Identities = 39/118 (33%), Positives = 65/118 (55%), Gaps = 17/118 (14%)
Query: 99 AYVRFKNLESVEKALE-MNGHVIDEHTIRV-------DKALTTT-------KSNSHSIFI 143
+V +K E +KAL+ + GH++D H + V ALT+T K + I +
Sbjct: 772 GFVEYKKPEQAQKALKRLQGHIVDGHKLEVRISERATKPALTSTRKKQVPKKQTTSKILV 831
Query: 144 GNIPFEAEEEELRKAFESCGEIDNVRLIRDQH-TNIGKGFGYVNFKAEEEELRKAFES 200
NIPF+A + E+R+ F + GE+ VRL + T +GFG+V+F +++ +KAF +
Sbjct: 832 RNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDA-KKAFNA 888
Score = 38.9 bits (89), Expect = 1.7, Method: Composition-based stats.
Identities = 27/103 (26%), Positives = 46/103 (44%), Gaps = 6/103 (5%)
Query: 117 GHVIDEHTIRVDKALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHT 176
G + EH D A +S +F+ N+ + + EE+L K F + G + + D T
Sbjct: 386 GRTLGEHEEEEDLA------DSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLT 439
Query: 177 NIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGK 219
KGF +V F E ++ E G++ R++ + I K
Sbjct: 440 KKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPSTIKK 482
>gi|344246933|gb|EGW03037.1| Heterogeneous nuclear ribonucleoprotein A/B [Cricetulus griseus]
Length = 211
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 57/106 (53%), Gaps = 1/106 (0%)
Query: 94 RTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKSNSHSIFIGNIPFEAEEE 153
R+ ++ FK+ SVEK L+ H +D I KA+ K IF+G + EA EE
Sbjct: 38 RSRGFGFILFKDSSSVEKVLDQKEHRLDGRVIDPKKAMAMKKDPVKKIFVGGLNPEATEE 97
Query: 154 ELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
++R+ F GEI+ + L D N +GF ++ +K EE+ ++K E
Sbjct: 98 KIREYFGQFGEIEAIELPIDPKLNKRRGFVFITYK-EEDPVKKVLE 142
>gi|396081064|gb|AFN82683.1| splicing factor CC1-like protein [Encephalitozoon romaleae SJ-2008]
Length = 273
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 55/100 (55%)
Query: 93 KRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKSNSHSIFIGNIPFEAEE 152
KR YV F E V+KAL+++G V + V+ A H+I+I NIPF ++
Sbjct: 105 KRNKGFGYVEFCKEEDVKKALKLDGTVFLGREVVVNMAHPRENKQRHTIYISNIPFGCDK 164
Query: 153 EELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEE 192
+L+K FE GE+ V D+ + KG+G+++F +E+
Sbjct: 165 RKLKKYFEEMGEVVGVSFPYDKENDRLKGYGFIDFGNKED 204
>gi|148666221|gb|EDK98637.1| mCG119114, isoform CRA_a [Mus musculus]
Length = 357
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 55/111 (49%), Gaps = 7/111 (6%)
Query: 84 CIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALT---TTKSNSH- 139
C+ M KR+ +V F ++ V+ A+ H ID + +A+ + K +H
Sbjct: 94 CVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHV 153
Query: 140 ---SIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 187
+F+G I + EE LR FE G+ID + +I D+ + +GFG+V F
Sbjct: 154 TVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTF 204
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 57/152 (37%), Gaps = 52/152 (34%)
Query: 127 VDKALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVN 186
+ A+ K +FIG + FE EE LR +E G++ + ++RD + +GFG+V
Sbjct: 53 TESAMEREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVT 112
Query: 187 FKA----------------------------------------------------EEEEL 194
F + EE L
Sbjct: 113 FSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHL 172
Query: 195 RKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 226
R FE G+ID + +I D+ + +GFG+V F
Sbjct: 173 RDYFEEYGKIDTIEIITDRQSGKKRGFGFVTF 204
>gi|367052169|ref|XP_003656463.1| hypothetical protein THITE_2121111 [Thielavia terrestris NRRL 8126]
gi|347003728|gb|AEO70127.1| hypothetical protein THITE_2121111 [Thielavia terrestris NRRL 8126]
Length = 609
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 90/184 (48%), Gaps = 18/184 (9%)
Query: 49 HALSSV-TSMFKPYGEVETVRFRSVPVADITLPRK-ACIKMNKVHEKRTNMNAYVRFKNL 106
H LSSV P +V+++RFRS+ A +P++ A IK + + + NAYV +
Sbjct: 250 HHLSSVLDKKADPPQKVQSIRFRSIAFATTGIPKRVAYIKKSLLEATTKSTNAYVVYSTA 309
Query: 107 ESVEKAL-EMNGHVIDEHTIRVDK-ALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCG- 163
+ A+ ++NG V+ + +RVD A + +F+GN+ F +E + G
Sbjct: 310 AAARLAVAQLNGTVVLDRHLRVDSVAHPAPVDHRRCVFVGNLGFVDDETVYSTKIDKEGK 369
Query: 164 EIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAF-ESCGEIDNVRLIRDQHTNIGKGFG 222
EI R ++ EE L + F E G++++VR++RD T +GKGF
Sbjct: 370 EITEKRKRTKTPMDV------------EEGLWRVFGEEAGKVESVRVVRDAATRVGKGFA 417
Query: 223 YVNF 226
YV F
Sbjct: 418 YVQF 421
>gi|403215569|emb|CCK70068.1| hypothetical protein KNAG_0D03220 [Kazachstania naganishii CBS
8797]
Length = 399
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/138 (34%), Positives = 71/138 (51%), Gaps = 23/138 (16%)
Query: 94 RTNMNAYVRFKNLESVEKAL-EMNGHVIDEHTIRVDKALTTTK-----SN---------- 137
R+ YV F+++ EKAL EM G ID I VD ++T+K SN
Sbjct: 188 RSRGYGYVDFEDISYAEKALKEMQGKEIDGRPINVD--MSTSKPAGGASNDRAKKFGDVP 245
Query: 138 ---SHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEEL 194
S ++F+GN+ F+A+ + L + F GEI +VR+ T KGFGYV + E+
Sbjct: 246 SEPSDTLFLGNLSFDADRDNLYEIFGKFGEIISVRIPTHPETEQPKGFGYVQY-TNTEDA 304
Query: 195 RKAFESC-GEIDNVRLIR 211
+KA ++ GE N R +R
Sbjct: 305 KKALDALQGESINDRPVR 322
Score = 38.1 bits (87), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 32/49 (65%)
Query: 140 SIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK 188
++F+G + + ++E L+ F G + + R+I ++ T+ +G+GYV+F+
Sbjct: 150 TLFVGRLSWSVDDEWLKNEFAPIGGVVSARVIMERGTDRSRGYGYVDFE 198
>gi|302654241|ref|XP_003018929.1| hypothetical protein TRV_07061 [Trichophyton verrucosum HKI 0517]
gi|291182617|gb|EFE38284.1| hypothetical protein TRV_07061 [Trichophyton verrucosum HKI 0517]
Length = 543
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 66/121 (54%), Gaps = 9/121 (7%)
Query: 99 AYVRFKNLESVEKALE-MNGHVIDEHTIRVDKAL---TTTKSNSHS---IFIGNIPFEAE 151
++ + + + E+A++ +NG + + IRV+ A T +K ++ S IF+G++ E
Sbjct: 183 GFIEYDDPGAAERAMQTLNGRRVHQSEIRVNWAYQSNTASKEDTSSHFHIFVGDLSNEVN 242
Query: 152 EEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESC-GEIDNVRLI 210
+E L +AF +CG + R++ D T +G+G+V F+ E + KA S GE R I
Sbjct: 243 DEVLLQAFSACGSVSEARVMWDMKTGRSRGYGFVAFR-ERADAEKALSSMDGEWLGSRAI 301
Query: 211 R 211
R
Sbjct: 302 R 302
>gi|326472030|gb|EGD96039.1| nucleolar protein 12 [Trichophyton tonsurans CBS 112818]
Length = 553
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 86/171 (50%), Gaps = 22/171 (12%)
Query: 63 EVETVRFRSVPVADITLPRKACIKMNKVHEKRT-NMNAYVRFKNLESVEKALEMNGHVID 121
++E++RFRS + +PR+A + + T NAYV + + +KAL++NG ++
Sbjct: 243 KIESLRFRSTAFSSTAVPRRAAYAKKDLMDSTTKGTNAYVVYSTALAAKKALKLNGTMVL 302
Query: 122 EHTIRVDKALTTTK-SNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGK 180
+ IRVD ++ +F+GN+ F EE + E GE+ + ++
Sbjct: 303 DRHIRVDSVSKPAPVDHTRCVFVGNLGFVDEETQ---PAEQDGEVKKKKKAA-AAADV-- 356
Query: 181 GFGYVNFKAEEEELRKAF-ESCGE---IDNVRLIRDQHTNIGKGFGYVNFK 227
EE L + F + CG +++VR++RD+ T +GKGF YV FK
Sbjct: 357 ----------EEGLWRTFNDQCGGEGVVESVRVVRDRLTRVGKGFAYVQFK 397
>gi|354472673|ref|XP_003498562.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A/B-like
[Cricetulus griseus]
Length = 243
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 57/106 (53%), Gaps = 1/106 (0%)
Query: 94 RTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKSNSHSIFIGNIPFEAEEE 153
R+ ++ FK+ SVEK L+ H +D I KA+ K IF+G + EA EE
Sbjct: 42 RSRGFGFILFKDSSSVEKVLDQKEHRLDGRVIDPKKAMAMKKDPVKKIFVGGLNPEATEE 101
Query: 154 ELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
++R+ F GEI+ + L D N +GF ++ +K EE+ ++K E
Sbjct: 102 KIREYFGQFGEIEAIELPIDPKLNKRRGFVFITYK-EEDPVKKVLE 146
>gi|302496843|ref|XP_003010422.1| hypothetical protein ARB_03123 [Arthroderma benhamiae CBS 112371]
gi|291173965|gb|EFE29782.1| hypothetical protein ARB_03123 [Arthroderma benhamiae CBS 112371]
Length = 541
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 66/121 (54%), Gaps = 9/121 (7%)
Query: 99 AYVRFKNLESVEKALE-MNGHVIDEHTIRVDKAL---TTTKSNSHS---IFIGNIPFEAE 151
++ + + + E+A++ +NG + + IRV+ A T +K ++ S IF+G++ E
Sbjct: 181 GFIEYDDPGAAERAMQTLNGRRVHQSEIRVNWAYQSNTASKEDTSSHFHIFVGDLSNEVN 240
Query: 152 EEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESC-GEIDNVRLI 210
+E L +AF +CG + R++ D T +G+G+V F+ E + KA S GE R I
Sbjct: 241 DEVLLQAFSACGSVSEARVMWDMKTGRSRGYGFVAFR-ERADAEKALSSMDGEWLGSRAI 299
Query: 211 R 211
R
Sbjct: 300 R 300
>gi|31455238|gb|AAH00506.3| HNRNPA2B1 protein [Homo sapiens]
Length = 249
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 55/111 (49%), Gaps = 7/111 (6%)
Query: 84 CIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALT---TTKSNSH- 139
C+ M KR+ +V F ++ V+ A+ H ID + +A+ + K +H
Sbjct: 38 CVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHV 97
Query: 140 ---SIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 187
+F+G I + EE LR FE G+ID + +I D+ + +GFG+V F
Sbjct: 98 TVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTF 148
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 54/144 (37%), Gaps = 52/144 (36%)
Query: 135 KSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKA----- 189
K +FIG + FE EE LR +E G++ + ++RD + +GFG+V F +
Sbjct: 5 KEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVD 64
Query: 190 -----------------------------------------------EEEELRKAFESCG 202
EE LR FE G
Sbjct: 65 AAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYG 124
Query: 203 EIDNVRLIRDQHTNIGKGFGYVNF 226
+ID + +I D+ + +GFG+V F
Sbjct: 125 KIDTIEIITDRQSGKKRGFGFVTF 148
>gi|255953657|ref|XP_002567581.1| Pc21g05350 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211589292|emb|CAP95432.1| Pc21g05350 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 521
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 87/171 (50%), Gaps = 18/171 (10%)
Query: 63 EVETVRFRSVPVADIT-LPRKACIKMNKVHEKRT-NMNAYVRFKNLESVEKA-LEMNGHV 119
++E++RFRSV A +P++A ++ ++ T + NAY + +L++ KA +NG +
Sbjct: 231 KIESIRFRSVAFASGGGIPKRASFAKREILDETTPSTNAYAVYTSLQAARKAPAALNGTI 290
Query: 120 IDEHTIRVDK-ALTTTKSNSHSIFIGNIPF---EAEEEELRKAFESCGEIDNVRLIRDQH 175
+ + +RVD A + +F+GN+ F E EE+ E G+ VR D
Sbjct: 291 VLDRHLRVDSLAHPAEIDHKRCVFVGNLSFIDSETPEED-----EKTGKKKKVRAPADIE 345
Query: 176 TNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 226
+ + F +++ ++K ++ VR+IRD T +GKGF YV F
Sbjct: 346 EGLWRIFNAHTGGKDKKAVKK------NVEFVRVIRDSTTRVGKGFAYVQF 390
>gi|417405465|gb|JAA49443.1| Putative rna-binding protein rrm superfamily [Desmodus rotundus]
Length = 968
Score = 62.0 bits (149), Expect = 2e-07, Method: Composition-based stats.
Identities = 38/118 (32%), Positives = 65/118 (55%), Gaps = 17/118 (14%)
Query: 99 AYVRFKNLESVEKAL-EMNGHVIDEHTIRV-------DKALTTT-------KSNSHSIFI 143
+V ++ E +KAL ++ GHV+D H + V ALT+T K + I +
Sbjct: 776 GFVEYRKPEQAQKALKQLQGHVVDSHKLEVRISERATKPALTSTRKKQVPRKQTTSKILV 835
Query: 144 GNIPFEAEEEELRKAFESCGEIDNVRLIRDQH-TNIGKGFGYVNFKAEEEELRKAFES 200
NIPF+A+ E+R+ F + GE+ VRL + T +GFG+V+F +++ ++AF +
Sbjct: 836 RNIPFQADSREIRELFSTFGELKTVRLPKKMAGTGSHRGFGFVDFLTKQDA-KRAFNA 892
Score = 41.6 bits (96), Expect = 0.27, Method: Composition-based stats.
Identities = 42/179 (23%), Positives = 72/179 (40%), Gaps = 34/179 (18%)
Query: 66 TVRFRSVP-------VADITLPRK-ACIKMNKVHEKRTNMNAYVRFKNLESVEKALE--- 114
TV+ R P V + P K A I++ + +V F + E V+KAL+
Sbjct: 297 TVKLRGAPFNVTEKNVLEFLAPLKPAAIRIVRNAHGNKTGYVFVDFSSEEEVKKALKCNR 356
Query: 115 --MNGHVID---EHTIRVDKALTTTKS------------------NSHSIFIGNIPFEAE 151
M G I+ E + + K T + +S +F+ N+P+ +
Sbjct: 357 EYMGGRYIEVFREQNVPIAKGTLKTSAKPWQGRTLGENEEEEDLADSGRLFVRNLPYTST 416
Query: 152 EEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLI 210
EE+L + F G + + D T KGF +V F E ++ E G++ R++
Sbjct: 417 EEDLEQLFSKFGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRML 475
>gi|400602999|gb|EJP70597.1| cutinase negative acting protein [Beauveria bassiana ARSEF 2860]
Length = 448
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 64/139 (46%), Gaps = 27/139 (19%)
Query: 99 AYVRFKNLESVEKALE-MNGHVIDEHTIRVDKA--------------------LTTTKSN 137
YV F + ES KA E M G ID + +D A T +
Sbjct: 247 GYVDFGDSESATKAYEAMQGQEIDGRALNLDYANAKPTEGKPQDRAADRAKRHGDTLSAE 306
Query: 138 SHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKA 197
S ++F+GN+PF+ E++ +R+ F E+ +VRL D + KGFGYV F + E+ + A
Sbjct: 307 SDTLFVGNLPFDTEQDTVRQFFSEVAEVASVRLPTDPDSGNLKGFGYVTFNS-IEDAKSA 365
Query: 198 FE-----SCGEIDNVRLIR 211
+ S G N R +R
Sbjct: 366 LDAKNGASIGNGRNSRAVR 384
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 51/87 (58%), Gaps = 5/87 (5%)
Query: 127 VDKALTTTKSNSH--SIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGY 184
+D+A KS+ ++F G++ + ++ L +AF+S G I + R++ D++T +GFGY
Sbjct: 189 IDEAPKKAKSDDAPMTLFAGSLSWGVDDNALYEAFKSFGNIVSARVVTDKNTGRSRGFGY 248
Query: 185 VNFKAEEEELRKAFES--CGEIDNVRL 209
V+F + E KA+E+ EID L
Sbjct: 249 VDF-GDSESATKAYEAMQGQEIDGRAL 274
Score = 38.9 bits (89), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 30/44 (68%)
Query: 183 GYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 226
G +++ ++ L +AF+S G I + R++ D++T +GFGYV+F
Sbjct: 208 GSLSWGVDDNALYEAFKSFGNIVSARVVTDKNTGRSRGFGYVDF 251
>gi|154322853|ref|XP_001560741.1| hypothetical protein BC1G_00769 [Botryotinia fuckeliana B05.10]
gi|347837080|emb|CCD51652.1| similar to polyadenylate-binding protein [Botryotinia fuckeliana]
Length = 790
Score = 62.0 bits (149), Expect = 2e-07, Method: Composition-based stats.
Identities = 34/103 (33%), Positives = 57/103 (55%), Gaps = 10/103 (9%)
Query: 99 AYVRFKNLESVEKALE-MNGHVIDE-------HTIRVDK--ALTTTKSNSHSIFIGNIPF 148
+V ++ E+ +A++ +NG +++E H + D+ K+N +I++ NIP
Sbjct: 192 GFVHYETDEAAAQAIKHVNGMLLNEKKVFVGHHIPKKDRQSKFEEMKANFTNIYVKNIPV 251
Query: 149 EAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEE 191
EA EEE R+ FE G++ + L RD T +GFG+VNF E
Sbjct: 252 EATEEEFRELFEKFGDVTSASLARDAETGKSRGFGFVNFINHE 294
Score = 48.9 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 48/195 (24%), Positives = 76/195 (38%), Gaps = 64/195 (32%)
Query: 93 KRTNMNAYVRFKNLESVEKALE-MNGHVIDEHTIRV-----DKALTTTKSNSHSIFIGNI 146
+R+ AYV + EKALE +N +I R+ D AL K+ ++FI N+
Sbjct: 99 RRSLGYAYVNYNTTADGEKALEELNYTLIKGRPCRIMWSQRDPALR--KNGQGNVFIKNL 156
Query: 147 PFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYV--------------------- 185
+ + L F + G I + ++ +D+ + KG+G+V
Sbjct: 157 DVAIDNKALHDTFAAFGNILSCKVAQDE-SGASKGYGFVHYETDEAAAQAIKHVNGMLLN 215
Query: 186 ------------------------NF----------KAEEEELRKAFESCGEIDNVRLIR 211
NF +A EEE R+ FE G++ + L R
Sbjct: 216 EKKVFVGHHIPKKDRQSKFEEMKANFTNIYVKNIPVEATEEEFRELFEKFGDVTSASLAR 275
Query: 212 DQHTNIGKGFGYVNF 226
D T +GFG+VNF
Sbjct: 276 DAETGKSRGFGFVNF 290
>gi|389633057|ref|XP_003714181.1| nuclear localization sequence binding protein [Magnaporthe oryzae
70-15]
gi|351646514|gb|EHA54374.1| nuclear localization sequence binding protein [Magnaporthe oryzae
70-15]
gi|440473688|gb|ELQ42470.1| 28 kDa ribonucleoprotein [Magnaporthe oryzae Y34]
gi|440486239|gb|ELQ66126.1| 28 kDa ribonucleoprotein [Magnaporthe oryzae P131]
Length = 486
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 59/125 (47%), Gaps = 20/125 (16%)
Query: 94 RTNMNAYVRFKNLESVEKA-LEMNGHVIDEHTIRVD------------------KALTTT 134
R+ YV F E EKA E G ID I+VD K T
Sbjct: 278 RSKGFGYVDFATPEEAEKAHGEKQGAFIDGREIKVDFSTGKATNSNDAAGARAKKYGDTV 337
Query: 135 KSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEEL 194
S ++F+GN+PF+A+E+ + F E+ ++RL +Q + KGFGYV F + E+
Sbjct: 338 SPESDTLFVGNLPFDADEDSVGAFFSEVAEVKSLRLPTEQESGRRKGFGYVTFNS-VEDA 396
Query: 195 RKAFE 199
+ AFE
Sbjct: 397 KSAFE 401
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 41/72 (56%)
Query: 140 SIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
++F+GN+ + ++ L + F+ CG + + R+I D+ + KGFGYV+F EE + E
Sbjct: 240 TLFVGNLSWNVDDAMLAEEFKFCGTVTSARVITDRESGRSKGFGYVDFATPEEAEKAHGE 299
Query: 200 SCGEIDNVRLIR 211
G + R I+
Sbjct: 300 KQGAFIDGREIK 311
Score = 37.7 bits (86), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 28/44 (63%)
Query: 183 GYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 226
G +++ ++ L + F+ CG + + R+I D+ + KGFGYV+F
Sbjct: 244 GNLSWNVDDAMLAEEFKFCGTVTSARVITDRESGRSKGFGYVDF 287
>gi|348564390|ref|XP_003467988.1| PREDICTED: heterogeneous nuclear ribonucleoproteins A2/B1-like
[Cavia porcellus]
Length = 383
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 55/111 (49%), Gaps = 7/111 (6%)
Query: 84 CIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALT---TTKSNSH- 139
C+ M KR+ +V F ++ V+ A+ H ID + +A+ + K +H
Sbjct: 80 CVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHV 139
Query: 140 ---SIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 187
+F+G I + EE LR FE G+ID + +I D+ + +GFG+V F
Sbjct: 140 TVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTF 190
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 66/173 (38%), Gaps = 53/173 (30%)
Query: 106 LESVEKALEMNGHVIDEHTIRVDKALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEI 165
L+ A E +GH T+ +++ K +FIG + FE EE LR +E G++
Sbjct: 19 LQGFSAAAERSGHRKTLETVPLERK-KREKEQFRKLFIGGLSFETTEESLRNYYEQWGKL 77
Query: 166 DNVRLIRDQHTNIGKGFGYVNFKA------------------------------------ 189
+ ++RD + +GFG+V F +
Sbjct: 78 TDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGA 137
Query: 190 ----------------EEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 226
EE LR FE G+ID + +I D+ + +GFG+V F
Sbjct: 138 HVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTF 190
>gi|363754371|ref|XP_003647401.1| hypothetical protein Ecym_6201 [Eremothecium cymbalariae
DBVPG#7215]
gi|356891038|gb|AET40584.1| hypothetical protein Ecym_6201 [Eremothecium cymbalariae
DBVPG#7215]
Length = 448
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/137 (35%), Positives = 69/137 (50%), Gaps = 22/137 (16%)
Query: 94 RTNMNAYVRFKNLESVEKAL-EMNGHVIDEHTIRVDKALTTTKSN--------------- 137
R+ YV F++ EKA+ EM G ID I VD + + SN
Sbjct: 250 RSRGYGYVDFEDKSYAEKAIKEMQGKEIDGRPINVDMSTSKPASNPKEDRAKKFGDVPSQ 309
Query: 138 -SHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRK 196
S ++F+GN+ F A+ + + + F+ G I +VR+ TN KGFGYV + A EE +K
Sbjct: 310 PSDTLFLGNLSFNADRDNIFELFKDYGSIISVRIPTHPETNQPKGFGYVQY-ASIEEAQK 368
Query: 197 AFESC-GE-IDN--VRL 209
A + GE IDN VRL
Sbjct: 369 ALDKLQGEYIDNRPVRL 385
Score = 39.7 bits (91), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 31/48 (64%)
Query: 140 SIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 187
+IF+G + + ++E L+ FE G + + R+I ++ T +G+GYV+F
Sbjct: 212 TIFVGRLSWSIDDEWLKTEFEHIGGVISARVIYERGTERSRGYGYVDF 259
>gi|410976696|ref|XP_003994750.1| PREDICTED: probable RNA-binding protein 19 [Felis catus]
Length = 994
Score = 61.6 bits (148), Expect = 2e-07, Method: Composition-based stats.
Identities = 40/132 (30%), Positives = 66/132 (50%), Gaps = 16/132 (12%)
Query: 86 KMNKVHEKRTNMNAYVRFKNLESVEKAL-EMNGHVIDEHTIRV-------DKALTTT--- 134
K NK E + +V ++ E +KAL ++ GH++D H + V ALT+
Sbjct: 756 KKNKTGELLSMGFGFVEYRKPEQAQKALKQLQGHIVDGHKLEVRISERATKPALTSARKK 815
Query: 135 ----KSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQH-TNIGKGFGYVNFKA 189
K + I + NIPF+A+ E+R+ F + GE+ VRL + T +GFG+V+F
Sbjct: 816 QVPRKQTTSKILVRNIPFQADSREIRELFSTFGELKTVRLPKKMSGTGSHRGFGFVDFLT 875
Query: 190 EEEELRKAFESC 201
+++ R C
Sbjct: 876 KQDAKRAFHALC 887
Score = 40.8 bits (94), Expect = 0.43, Method: Composition-based stats.
Identities = 43/188 (22%), Positives = 73/188 (38%), Gaps = 34/188 (18%)
Query: 66 TVRFRSVP-------VADITLP-RKACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNG 117
TVR R P V + P R I++ + +V F + E V++AL+ N
Sbjct: 288 TVRLRGAPFNVTEKNVTEFLAPLRPVAIRIVRNAHGNKTGYIFVDFSSEEEVKQALKCNR 347
Query: 118 HVIDEHTIRV--DKALTTTK------------------------SNSHSIFIGNIPFEAE 151
+ I V +K T K ++S +F+ N+P+ +
Sbjct: 348 EYMGGRYIEVFREKNAPTAKGPLKNSAKPWPGRTLGENEEEEDLADSGRLFVRNLPYSST 407
Query: 152 EEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIR 211
EE+L + F G + + D T KGF +V F E ++ E G++ R++
Sbjct: 408 EEDLEQLFSRFGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLH 467
Query: 212 DQHTNIGK 219
+ I K
Sbjct: 468 VLPSTIKK 475
>gi|395540406|ref|XP_003772146.1| PREDICTED: heterogeneous nuclear ribonucleoproteins A2/B1
[Sarcophilus harrisii]
Length = 385
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 55/111 (49%), Gaps = 7/111 (6%)
Query: 84 CIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALT---TTKSNSH- 139
C+ M KR+ +V F ++ V+ A+ H ID + +A+ + K +H
Sbjct: 63 CVVMRDPASKRSRGFGFVTFSSMAEVDAAMSARPHSIDGRVVEPKRAVAREESGKPGAHV 122
Query: 140 ---SIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 187
+F+G I + EE LR FE G+ID + +I D+ + +GFG+V F
Sbjct: 123 TVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTF 173
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 53/138 (38%), Gaps = 52/138 (37%)
Query: 141 IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKA----------- 189
+FIG + FE EE LR +E G++ + ++RD + +GFG+V F +
Sbjct: 36 LFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMSAR 95
Query: 190 -----------------------------------------EEEELRKAFESCGEIDNVR 208
EE LR FE G+ID +
Sbjct: 96 PHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIE 155
Query: 209 LIRDQHTNIGKGFGYVNF 226
+I D+ + +GFG+V F
Sbjct: 156 IITDRQSGKKRGFGFVTF 173
>gi|367002824|ref|XP_003686146.1| hypothetical protein TPHA_0F02310 [Tetrapisispora phaffii CBS 4417]
gi|357524446|emb|CCE63712.1| hypothetical protein TPHA_0F02310 [Tetrapisispora phaffii CBS 4417]
Length = 400
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 59/105 (56%), Gaps = 13/105 (12%)
Query: 100 YVRFKNLESVEKAL-----EMNGHVI-----DEHTIRVDKA-LTTTKSNSHS--IFIGNI 146
Y+ FK LE +E A+ E+NG + ++ R DK+ L + N S +F+GN+
Sbjct: 181 YIDFKTLEQMESAIALSETELNGRKLLIKSSTDYAGRPDKSDLVSMSKNPPSRILFVGNL 240
Query: 147 PFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEE 191
F+ +E LRK F+ CG+I +R+ Q + KGF +V+FK EE
Sbjct: 241 SFDTTDELLRKHFQHCGDIVKIRMATFQDSGKCKGFAFVDFKNEE 285
>gi|326480772|gb|EGE04782.1| nuclear and cytoplasmic polyadenylated RNA-binding protein pub1
[Trichophyton equinum CBS 127.97]
Length = 507
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 66/121 (54%), Gaps = 9/121 (7%)
Query: 99 AYVRFKNLESVEKALE-MNGHVIDEHTIRVDKAL---TTTKSNSHS---IFIGNIPFEAE 151
++ + + + E+A++ +NG + + IRV+ A T +K ++ S IF+G++ E
Sbjct: 147 GFIEYDDPGAAERAMQTLNGRRVHQSEIRVNWAYQSNTASKEDTSSHFHIFVGDLSNEVN 206
Query: 152 EEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESC-GEIDNVRLI 210
+E L +AF +CG + R++ D T +G+G+V F+ E + KA S GE R I
Sbjct: 207 DEVLLQAFSACGSVSEARVMWDMKTGRSRGYGFVAFR-ERADAEKALSSMDGEWLGSRAI 265
Query: 211 R 211
R
Sbjct: 266 R 266
>gi|327299776|ref|XP_003234581.1| nuclear and cytoplasmic polyadenylated RNA-binding protein pub1
[Trichophyton rubrum CBS 118892]
gi|326463475|gb|EGD88928.1| nuclear and cytoplasmic polyadenylated RNA-binding protein pub1
[Trichophyton rubrum CBS 118892]
Length = 507
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 66/121 (54%), Gaps = 9/121 (7%)
Query: 99 AYVRFKNLESVEKALE-MNGHVIDEHTIRVDKAL---TTTKSNSHS---IFIGNIPFEAE 151
++ + + + E+A++ +NG + + IRV+ A T +K ++ S IF+G++ E
Sbjct: 147 GFIEYDDPGAAERAMQTLNGRRVHQSEIRVNWAYQSNTASKEDTSSHFHIFVGDLSNEVN 206
Query: 152 EEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESC-GEIDNVRLI 210
+E L +AF +CG + R++ D T +G+G+V F+ E + KA S GE R I
Sbjct: 207 DEVLLQAFSACGSVSEARVMWDMKTGRSRGYGFVAFR-ERADAEKALSSMDGEWLGSRAI 265
Query: 211 R 211
R
Sbjct: 266 R 266
>gi|12851175|dbj|BAB28963.1| unnamed protein product [Mus musculus]
gi|148701715|gb|EDL33662.1| heterogeneous nuclear ribonucleoprotein A/B, isoform CRA_b [Mus
musculus]
Length = 276
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 62/115 (53%), Gaps = 2/115 (1%)
Query: 85 IKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKSNSHSIFIG 144
IKM+ + R+ ++ FK+ SVEK L+ H +D I KA+ K IF+G
Sbjct: 106 IKMDP-NTGRSRGFGFILFKDSSSVEKVLDQKEHRLDGRVIDPKKAMAMKKDPVKKIFVG 164
Query: 145 NIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
+ EA EE++R+ F GEI+ + L D N +GF ++ FK EE+ ++K E
Sbjct: 165 GLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFK-EEDPVKKVLE 218
>gi|315052890|ref|XP_003175819.1| nucleolysin TIA-1 [Arthroderma gypseum CBS 118893]
gi|311341134|gb|EFR00337.1| nucleolysin TIA-1 [Arthroderma gypseum CBS 118893]
Length = 506
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 66/121 (54%), Gaps = 9/121 (7%)
Query: 99 AYVRFKNLESVEKALE-MNGHVIDEHTIRVDKAL---TTTKSNSHS---IFIGNIPFEAE 151
++ + + + E+A++ +NG + + IRV+ A T +K ++ S IF+G++ E
Sbjct: 146 GFIEYDDPGAAERAMQTLNGRRVHQSEIRVNWAYQSNTASKEDTSSHFHIFVGDLSNEVN 205
Query: 152 EEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESC-GEIDNVRLI 210
+E L +AF +CG + R++ D T +G+G+V F+ E + KA S GE R I
Sbjct: 206 DEVLLQAFSACGSVSEARVMWDMKTGRSRGYGFVAFR-ERADAEKALSSMDGEWLGSRAI 264
Query: 211 R 211
R
Sbjct: 265 R 265
>gi|71896753|ref|NP_001026156.1| heterogeneous nuclear ribonucleoproteins A2/B1 [Gallus gallus]
gi|53127438|emb|CAG31102.1| hypothetical protein RCJMB04_2g17 [Gallus gallus]
Length = 349
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 55/111 (49%), Gaps = 7/111 (6%)
Query: 84 CIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALT---TTKSNSH- 139
C+ M KR+ +V F ++ V+ A+ H ID + +A+ + K +H
Sbjct: 46 CVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHTIDGRVVEPKRAVAREESGKPGAHV 105
Query: 140 ---SIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 187
+F+G I + EE LR FE G+ID + +I D+ + +GFG+V F
Sbjct: 106 TVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTF 156
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 53/138 (38%), Gaps = 52/138 (37%)
Query: 141 IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKA----------- 189
+FIG + FE EE LR +E G++ + ++RD + +GFG+V F +
Sbjct: 19 LFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAAR 78
Query: 190 -----------------------------------------EEEELRKAFESCGEIDNVR 208
EE LR FE G+ID +
Sbjct: 79 PHTIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIE 138
Query: 209 LIRDQHTNIGKGFGYVNF 226
+I D+ + +GFG+V F
Sbjct: 139 IITDRQSGKKRGFGFVTF 156
>gi|339248069|ref|XP_003375668.1| RNA-binding protein 34 [Trichinella spiralis]
gi|316970928|gb|EFV54781.1| RNA-binding protein 34 [Trichinella spiralis]
Length = 217
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 35/48 (72%)
Query: 140 SIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 187
++F+GN+ F+ EEE+ F CGEID +R++RD H IGKGFG+ ++
Sbjct: 85 AVFLGNLAFDIGEEEIYTHFTDCGEIDRIRVVRDPHNYIGKGFGFESY 132
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 49/92 (53%), Gaps = 5/92 (5%)
Query: 143 IGNIPFEAEEEELRKAFESCGEIDNV-RLIRDQHTNIGKG--FGYVNFKAEEEELRKAFE 199
+G+ F A E+ RK SC + + R I+ + + + G + F EEE+ F
Sbjct: 48 LGDYKFYALTEKSRKY--SCQCVHPIHRCIKRRQYDKKRAVFLGNLAFDIGEEEIYTHFT 105
Query: 200 SCGEIDNVRLIRDQHTNIGKGFGYVNFKVSFT 231
CGEID +R++RD H IGKGFG+ ++ V
Sbjct: 106 DCGEIDRIRVVRDPHNYIGKGFGFESYSVGLA 137
>gi|116182340|ref|XP_001221019.1| hypothetical protein CHGG_01798 [Chaetomium globosum CBS 148.51]
gi|88186095|gb|EAQ93563.1| hypothetical protein CHGG_01798 [Chaetomium globosum CBS 148.51]
Length = 641
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 90/183 (49%), Gaps = 17/183 (9%)
Query: 60 PYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRT-NMNAYVRFKNLESVEKAL-EMNG 117
P +VE++RFRS +P++A +V E T + NAY + + A+ ++NG
Sbjct: 306 PPQKVESIRFRSTAFESAGIPKRAAFIKKEVLEATTKSTNAYAVYSTTAAARLAVAQLNG 365
Query: 118 HVIDEHTIRVDK-ALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHT 176
V+ + +RVD A + +F+GN+ F +E + NV+ + ++
Sbjct: 366 TVVLDRHLRVDSVAHPAAVDHRRCVFVGNLGFVDDES-----------VYNVK-VNEEGK 413
Query: 177 NIGKGFGYVNFKAE-EEELRKAF-ESCGEIDNVRLIRDQHTNIGKGFGYVNFKVSFTTLS 234
+G+ + EE L + F + G++++VR++RD T +GKGF YV F + S
Sbjct: 414 EVGERRKRTKTPMDVEEGLWRVFGKEGGKVESVRVVRDAATRVGKGFAYVQFYDGNSVES 473
Query: 235 SIF 237
+I
Sbjct: 474 AIL 476
>gi|449268325|gb|EMC79194.1| Heterogeneous nuclear ribonucleoproteins A2/B1, partial [Columba
livia]
Length = 339
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 55/111 (49%), Gaps = 7/111 (6%)
Query: 84 CIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALT---TTKSNSH- 139
C+ M KR+ +V F ++ V+ A+ H ID + +A+ + K +H
Sbjct: 36 CVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHTIDGRVVEPKRAVAREESGKPGAHV 95
Query: 140 ---SIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 187
+F+G I + EE LR FE G+ID + +I D+ + +GFG+V F
Sbjct: 96 TVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTF 146
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 53/138 (38%), Gaps = 52/138 (37%)
Query: 141 IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKA----------- 189
+FIG + FE EE LR +E G++ + ++RD + +GFG+V F +
Sbjct: 9 LFIGGLSFETTEESLRSYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAAR 68
Query: 190 -----------------------------------------EEEELRKAFESCGEIDNVR 208
EE LR FE G+ID +
Sbjct: 69 PHTIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIE 128
Query: 209 LIRDQHTNIGKGFGYVNF 226
+I D+ + +GFG+V F
Sbjct: 129 IITDRQSGKKRGFGFVTF 146
>gi|344270293|ref|XP_003406980.1| PREDICTED: heterogeneous nuclear ribonucleoproteins A2/B1-like
[Loxodonta africana]
Length = 365
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 55/111 (49%), Gaps = 7/111 (6%)
Query: 84 CIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALT---TTKSNSH- 139
C+ M KR+ +V F ++ V+ A+ H ID + +A+ + K +H
Sbjct: 62 CVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHV 121
Query: 140 ---SIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 187
+F+G I + EE LR FE G+ID + +I D+ + +GFG+V F
Sbjct: 122 TVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTF 172
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 53/138 (38%), Gaps = 52/138 (37%)
Query: 141 IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKA----------- 189
+FIG + FE EE LR +E G++ + ++RD + +GFG+V F +
Sbjct: 35 LFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAAR 94
Query: 190 -----------------------------------------EEEELRKAFESCGEIDNVR 208
EE LR FE G+ID +
Sbjct: 95 PHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIE 154
Query: 209 LIRDQHTNIGKGFGYVNF 226
+I D+ + +GFG+V F
Sbjct: 155 IITDRQSGKKRGFGFVTF 172
>gi|417410136|gb|JAA51545.1| Putative rna-binding protein musashi/mrna cleavage and
polyadenylation factor i complex subunit hrp1, partial
[Desmodus rotundus]
Length = 368
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 55/111 (49%), Gaps = 7/111 (6%)
Query: 84 CIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALT---TTKSNSH- 139
C+ M KR+ +V F ++ V+ A+ H ID + +A+ + K +H
Sbjct: 65 CVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHV 124
Query: 140 ---SIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 187
+F+G I + EE LR FE G+ID + +I D+ + +GFG+V F
Sbjct: 125 TVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTF 175
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 57/152 (37%), Gaps = 52/152 (34%)
Query: 127 VDKALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVN 186
+ A+ K +FIG + FE EE LR +E G++ + ++RD + +GFG+V
Sbjct: 24 TESAMEREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVT 83
Query: 187 FKA----------------------------------------------------EEEEL 194
F + EE L
Sbjct: 84 FSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHL 143
Query: 195 RKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 226
R FE G+ID + +I D+ + +GFG+V F
Sbjct: 144 RDYFEEYGKIDTIEIITDRQSGKKRGFGFVTF 175
>gi|90083957|dbj|BAE90929.1| unnamed protein product [Macaca fascicularis]
Length = 317
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 55/111 (49%), Gaps = 7/111 (6%)
Query: 84 CIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALT---TTKSNSH- 139
C+ M KR+ +V F ++ V+ A+ H ID + +A+ + K +H
Sbjct: 50 CVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHV 109
Query: 140 ---SIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 187
+F+G I + EE LR FE G+ID + +I D+ + +GFG+V F
Sbjct: 110 TVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTF 160
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 53/138 (38%), Gaps = 52/138 (37%)
Query: 141 IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKA----------- 189
+FIG + FE EE LR +E G++ + ++RD + +GFG+V F +
Sbjct: 23 LFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAAR 82
Query: 190 -----------------------------------------EEEELRKAFESCGEIDNVR 208
EE LR FE G+ID +
Sbjct: 83 PHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIE 142
Query: 209 LIRDQHTNIGKGFGYVNF 226
+I D+ + +GFG+V F
Sbjct: 143 IITDRQSGKKRGFGFVTF 160
>gi|355694911|gb|AER99826.1| heteroproteinous nuclear ribonucleoprotein A2/B1 [Mustela putorius
furo]
Length = 173
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 55/111 (49%), Gaps = 7/111 (6%)
Query: 84 CIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALT---TTKSNSH- 139
C+ M KR+ +V F ++ V+ A+ H ID + +A+ + K +H
Sbjct: 36 CVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHV 95
Query: 140 ---SIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 187
+F+G I + EE LR FE G+ID + +I D+ + +GFG+V F
Sbjct: 96 TVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTF 146
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 53/138 (38%), Gaps = 52/138 (37%)
Query: 141 IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKA----------- 189
+FIG + FE EE LR +E G++ + ++RD + +GFG+V F +
Sbjct: 9 LFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAAR 68
Query: 190 -----------------------------------------EEEELRKAFESCGEIDNVR 208
EE LR FE G+ID +
Sbjct: 69 PHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIE 128
Query: 209 LIRDQHTNIGKGFGYVNF 226
+I D+ + +GFG+V F
Sbjct: 129 IITDRQSGKKRGFGFVTF 146
>gi|30794154|ref|NP_083038.1| probable RNA-binding protein 19 [Mus musculus]
gi|73621449|sp|Q8R3C6.1|RBM19_MOUSE RecName: Full=Probable RNA-binding protein 19; AltName:
Full=RNA-binding motif protein 19
gi|19343654|gb|AAH25619.1| RNA binding motif protein 19 [Mus musculus]
gi|21707580|gb|AAH34010.1| RNA binding motif protein 19 [Mus musculus]
gi|148687830|gb|EDL19777.1| RNA binding motif protein 19 [Mus musculus]
Length = 952
Score = 61.6 bits (148), Expect = 3e-07, Method: Composition-based stats.
Identities = 39/118 (33%), Positives = 64/118 (54%), Gaps = 17/118 (14%)
Query: 99 AYVRFKNLESVEKAL-EMNGHVIDEHTIRV-------DKALTTT-------KSNSHSIFI 143
+V +K E +KAL ++ GH +D H + V ALT+T K + I +
Sbjct: 769 GFVEYKKPEQAQKALKQLQGHTVDGHKLEVRISERATKPALTSTRKKQVPKKQTTSKILV 828
Query: 144 GNIPFEAEEEELRKAFESCGEIDNVRLIRDQH-TNIGKGFGYVNFKAEEEELRKAFES 200
NIPF+A + E+R+ F + GE+ VRL + T +GFG+V+F +++ +KAF +
Sbjct: 829 RNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDA-KKAFNA 885
Score = 38.5 bits (88), Expect = 2.4, Method: Composition-based stats.
Identities = 22/84 (26%), Positives = 41/84 (48%)
Query: 136 SNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELR 195
++S +F+ N+ + + EE+L K F + G + + D T KGF +V F E ++
Sbjct: 397 ADSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVK 456
Query: 196 KAFESCGEIDNVRLIRDQHTNIGK 219
E G++ R++ + I K
Sbjct: 457 AYAEVDGQVFQGRMLHVLPSTIKK 480
>gi|417409751|gb|JAA51367.1| Putative rna-binding protein musashi/mrna cleavage and
polyadenylation factor i complex subunit hrp1, partial
[Desmodus rotundus]
Length = 328
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 55/111 (49%), Gaps = 7/111 (6%)
Query: 84 CIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALT---TTKSNSH- 139
C+ M KR+ +V F ++ V+ A+ H ID + +A+ + K +H
Sbjct: 65 CVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHV 124
Query: 140 ---SIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 187
+F+G I + EE LR FE G+ID + +I D+ + +GFG+V F
Sbjct: 125 TVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTF 175
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 57/152 (37%), Gaps = 52/152 (34%)
Query: 127 VDKALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVN 186
+ A+ K +FIG + FE EE LR +E G++ + ++RD + +GFG+V
Sbjct: 24 TESAMEREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVT 83
Query: 187 FKA----------------------------------------------------EEEEL 194
F + EE L
Sbjct: 84 FSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHL 143
Query: 195 RKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 226
R FE G+ID + +I D+ + +GFG+V F
Sbjct: 144 RDYFEEYGKIDTIEIITDRQSGKKRGFGFVTF 175
>gi|354472764|ref|XP_003498607.1| PREDICTED: heterogeneous nuclear ribonucleoproteins A2/B1-like
[Cricetulus griseus]
Length = 357
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 55/111 (49%), Gaps = 7/111 (6%)
Query: 84 CIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALT---TTKSNSH- 139
C+ M KR+ +V F ++ V+ A+ H ID + +A+ + K +H
Sbjct: 54 CVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHV 113
Query: 140 ---SIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 187
+F+G I + EE LR FE G+ID + +I D+ + +GFG+V F
Sbjct: 114 TVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTF 164
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 53/138 (38%), Gaps = 52/138 (37%)
Query: 141 IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKA----------- 189
+FIG + FE EE LR +E G++ + ++RD + +GFG+V F +
Sbjct: 27 LFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAAR 86
Query: 190 -----------------------------------------EEEELRKAFESCGEIDNVR 208
EE LR FE G+ID +
Sbjct: 87 PHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIE 146
Query: 209 LIRDQHTNIGKGFGYVNF 226
+I D+ + +GFG+V F
Sbjct: 147 IITDRQSGKKRGFGFVTF 164
>gi|444727997|gb|ELW68462.1| Heterogeneous nuclear ribonucleoproteins A2/B1 [Tupaia chinensis]
Length = 274
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 55/111 (49%), Gaps = 7/111 (6%)
Query: 84 CIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALT---TTKSNSH- 139
C+ M KR+ +V F ++ V+ A+ H ID + +A+ + K +H
Sbjct: 38 CVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHV 97
Query: 140 ---SIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 187
+F+G I + EE LR FE G+ID + +I D+ + +GFG+V F
Sbjct: 98 TVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVPF 148
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 54/144 (37%), Gaps = 52/144 (36%)
Query: 135 KSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKA----- 189
K +FIG + FE EE LR +E G++ + ++RD + +GFG+V F +
Sbjct: 5 KEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVD 64
Query: 190 -----------------------------------------------EEEELRKAFESCG 202
EE LR FE G
Sbjct: 65 AAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYG 124
Query: 203 EIDNVRLIRDQHTNIGKGFGYVNF 226
+ID + +I D+ + +GFG+V F
Sbjct: 125 KIDTIEIITDRQSGKKRGFGFVPF 148
>gi|406867457|gb|EKD20495.1| 4 family polyadenylate binding protein [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 785
Score = 61.6 bits (148), Expect = 3e-07, Method: Composition-based stats.
Identities = 34/115 (29%), Positives = 60/115 (52%), Gaps = 10/115 (8%)
Query: 99 AYVRFKNLESVEKALE-MNGHVIDEHTIRV---------DKALTTTKSNSHSIFIGNIPF 148
+V ++ E+ +A++ +NG +++E + V K+N +I++ NIP
Sbjct: 193 GFVHYETDEAASQAIKHVNGMLLNEKKVFVGHHIPKKDRQSKFEEMKANFTNIYVKNIPV 252
Query: 149 EAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGE 203
EA +EE R+ FE G++ + L RD +N +GFG+VNF E + E G+
Sbjct: 253 EATDEEFRELFEKFGDVTSASLARDTDSNKSRGFGFVNFINHEHAAKAVDELNGK 307
Score = 47.4 bits (111), Expect = 0.005, Method: Composition-based stats.
Identities = 48/195 (24%), Positives = 77/195 (39%), Gaps = 64/195 (32%)
Query: 93 KRTNMNAYVRFKNLESVEKALE-MNGHVIDEHTIRV-----DKALTTTKSNSHSIFIGNI 146
+R+ AYV + EKALE +N +I R+ D AL K+ ++FI N+
Sbjct: 100 RRSLGYAYVNYNTTIDGEKALEELNYTLIKGRPCRIMWSQRDPALR--KTGQGNVFIKNL 157
Query: 147 PFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYV--------------------- 185
+ + L F + G I + ++ +D+ T KG+G+V
Sbjct: 158 DTAIDNKALHDTFAAFGNILSCKVAQDE-TGASKGYGFVHYETDEAASQAIKHVNGMLLN 216
Query: 186 ------------------------NF----------KAEEEELRKAFESCGEIDNVRLIR 211
NF +A +EE R+ FE G++ + L R
Sbjct: 217 EKKVFVGHHIPKKDRQSKFEEMKANFTNIYVKNIPVEATDEEFRELFEKFGDVTSASLAR 276
Query: 212 DQHTNIGKGFGYVNF 226
D +N +GFG+VNF
Sbjct: 277 DTDSNKSRGFGFVNF 291
>gi|212541320|ref|XP_002150815.1| RNA binding protein, putative [Talaromyces marneffei ATCC 18224]
gi|210068114|gb|EEA22206.1| RNA binding protein, putative [Talaromyces marneffei ATCC 18224]
Length = 540
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 81/167 (48%), Gaps = 10/167 (5%)
Query: 64 VETVRFRSVPVA-DITLPRKACIKMNKVHEKRT-NMNAYVRFKNLESVEKAL-EMNGHVI 120
+E++RFRS + +PR+A + + T + NAYV + + +KA +NG V+
Sbjct: 248 IESIRFRSTAYGTEKGVPRRAAFAHKETMDSTTLSTNAYVVYSTPIAAQKAPGALNGTVV 307
Query: 121 DEHTIRVDK-ALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIG 179
+RVD A N +F+GN+ F +E++ E+ + N ++
Sbjct: 308 LGRHLRVDNVAHPAAIDNKRCVFVGNLDFVGQEKDENDDEETPKKKKNS-----PPADVE 362
Query: 180 KGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 226
+G + F A K G +++VR++RDQ T +GKGF YV F
Sbjct: 363 EGL-WRTFNANTGVAGKKNAGGGNVESVRVVRDQATRVGKGFAYVQF 408
>gi|158259881|dbj|BAF82118.1| unnamed protein product [Homo sapiens]
Length = 353
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 55/111 (49%), Gaps = 7/111 (6%)
Query: 84 CIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALT---TTKSNSH- 139
C+ M KR+ +V F ++ V+ A+ H ID + +A+ + K +H
Sbjct: 50 CVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHV 109
Query: 140 ---SIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 187
+F+G I + EE LR FE G+ID + +I D+ + +GFG+V F
Sbjct: 110 TVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTF 160
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 53/138 (38%), Gaps = 52/138 (37%)
Query: 141 IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKA----------- 189
+FIG + FE EE LR +E G++ + ++RD + +GFG+V F +
Sbjct: 23 LFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAAR 82
Query: 190 -----------------------------------------EEEELRKAFESCGEIDNVR 208
EE LR FE G+ID +
Sbjct: 83 PHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIE 142
Query: 209 LIRDQHTNIGKGFGYVNF 226
+I D+ + +GFG+V F
Sbjct: 143 IITDRQSGKKRGFGFVTF 160
>gi|351704285|gb|EHB07204.1| Heterogeneous nuclear ribonucleoproteins A2/B1, partial
[Heterocephalus glaber]
gi|355560744|gb|EHH17430.1| Heterogeneous nuclear ribonucleoproteins A2/B1, partial [Macaca
mulatta]
gi|355747762|gb|EHH52259.1| Heterogeneous nuclear ribonucleoproteins A2/B1, partial [Macaca
fascicularis]
Length = 352
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 55/111 (49%), Gaps = 7/111 (6%)
Query: 84 CIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALT---TTKSNSH- 139
C+ M KR+ +V F ++ V+ A+ H ID + +A+ + K +H
Sbjct: 49 CVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHV 108
Query: 140 ---SIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 187
+F+G I + EE LR FE G+ID + +I D+ + +GFG+V F
Sbjct: 109 TVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTF 159
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 53/138 (38%), Gaps = 52/138 (37%)
Query: 141 IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKA----------- 189
+FIG + FE EE LR +E G++ + ++RD + +GFG+V F +
Sbjct: 22 LFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAAR 81
Query: 190 -----------------------------------------EEEELRKAFESCGEIDNVR 208
EE LR FE G+ID +
Sbjct: 82 PHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIE 141
Query: 209 LIRDQHTNIGKGFGYVNF 226
+I D+ + +GFG+V F
Sbjct: 142 IITDRQSGKKRGFGFVTF 159
>gi|291394569|ref|XP_002713772.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A2/B1
[Oryctolagus cuniculus]
gi|291397610|ref|XP_002715276.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A2/B1
[Oryctolagus cuniculus]
Length = 352
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 55/111 (49%), Gaps = 7/111 (6%)
Query: 84 CIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALT---TTKSNSH- 139
C+ M KR+ +V F ++ V+ A+ H ID + +A+ + K +H
Sbjct: 50 CVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHV 109
Query: 140 ---SIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 187
+F+G I + EE LR FE G+ID + +I D+ + +GFG+V F
Sbjct: 110 TVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTF 160
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 53/138 (38%), Gaps = 52/138 (37%)
Query: 141 IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKA----------- 189
+FIG + FE EE LR +E G++ + ++RD + +GFG+V F +
Sbjct: 23 LFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAAR 82
Query: 190 -----------------------------------------EEEELRKAFESCGEIDNVR 208
EE LR FE G+ID +
Sbjct: 83 PHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIE 142
Query: 209 LIRDQHTNIGKGFGYVNF 226
+I D+ + +GFG+V F
Sbjct: 143 IITDRQSGKKRGFGFVTF 160
>gi|157265559|ref|NP_001098083.1| heterogeneous nuclear ribonucleoproteins A2/B1 [Rattus norvegicus]
gi|224493240|sp|A7VJC2.1|ROA2_RAT RecName: Full=Heterogeneous nuclear ribonucleoproteins A2/B1;
Short=hnRNP A2/B1
gi|157059861|dbj|BAF79676.1| heterogeneous nuclear ribonucleoprotein B1 [Rattus norvegicus]
Length = 353
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 55/111 (49%), Gaps = 7/111 (6%)
Query: 84 CIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALT---TTKSNSH- 139
C+ M KR+ +V F ++ V+ A+ H ID + +A+ + K +H
Sbjct: 50 CVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHV 109
Query: 140 ---SIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 187
+F+G I + EE LR FE G+ID + +I D+ + +GFG+V F
Sbjct: 110 TVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTF 160
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 53/138 (38%), Gaps = 52/138 (37%)
Query: 141 IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKA----------- 189
+FIG + FE EE LR +E G++ + ++RD + +GFG+V F +
Sbjct: 23 LFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAAR 82
Query: 190 -----------------------------------------EEEELRKAFESCGEIDNVR 208
EE LR FE G+ID +
Sbjct: 83 PHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIE 142
Query: 209 LIRDQHTNIGKGFGYVNF 226
+I D+ + +GFG+V F
Sbjct: 143 IITDRQSGKKRGFGFVTF 160
>gi|14043072|ref|NP_112533.1| heterogeneous nuclear ribonucleoproteins A2/B1 isoform B1 [Homo
sapiens]
gi|388452958|ref|NP_001252700.1| heterogeneous nuclear ribonucleoproteins A2/B1 [Macaca mulatta]
gi|73976084|ref|XP_532495.2| PREDICTED: heterogeneous nuclear ribonucleoproteins A2/B1 isoform 1
[Canis lupus familiaris]
gi|194209740|ref|XP_001498416.2| PREDICTED: heterogeneous nuclear ribonucleoproteins A2/B1 isoform 1
[Equus caballus]
gi|296209404|ref|XP_002751505.1| PREDICTED: heterogeneous nuclear ribonucleoproteins A2/B1 isoform 1
[Callithrix jacchus]
gi|301754131|ref|XP_002912905.1| PREDICTED: heterogeneous nuclear ribonucleoproteins A2/B1-like
[Ailuropoda melanoleuca]
gi|332242622|ref|XP_003270484.1| PREDICTED: heterogeneous nuclear ribonucleoproteins A2/B1 isoform 2
[Nomascus leucogenys]
gi|332864911|ref|XP_519003.3| PREDICTED: heterogeneous nuclear ribonucleoproteins A2/B1 isoform 2
[Pan troglodytes]
gi|335305558|ref|XP_003134901.2| PREDICTED: heterogeneous nuclear ribonucleoproteins A2/B1 isoform 1
[Sus scrofa]
gi|395830927|ref|XP_003788564.1| PREDICTED: heterogeneous nuclear ribonucleoproteins A2/B1 [Otolemur
garnettii]
gi|397472890|ref|XP_003807965.1| PREDICTED: heterogeneous nuclear ribonucleoproteins A2/B1 isoform 2
[Pan paniscus]
gi|402863877|ref|XP_003896220.1| PREDICTED: heterogeneous nuclear ribonucleoproteins A2/B1 isoform 2
[Papio anubis]
gi|403287971|ref|XP_003935192.1| PREDICTED: heterogeneous nuclear ribonucleoproteins A2/B1 isoform 2
[Saimiri boliviensis boliviensis]
gi|410952508|ref|XP_003982921.1| PREDICTED: heterogeneous nuclear ribonucleoproteins A2/B1 isoform 2
[Felis catus]
gi|426227786|ref|XP_004007996.1| PREDICTED: heterogeneous nuclear ribonucleoproteins A2/B1 [Ovis
aries]
gi|426355699|ref|XP_004045247.1| PREDICTED: heterogeneous nuclear ribonucleoproteins A2/B1 isoform 2
[Gorilla gorilla gorilla]
gi|133257|sp|P22626.2|ROA2_HUMAN RecName: Full=Heterogeneous nuclear ribonucleoproteins A2/B1;
Short=hnRNP A2/B1
gi|337453|gb|AAA60271.1| hnRNP B1 protein [Homo sapiens]
gi|565643|dbj|BAA06031.1| hnRNP B1 protein [Homo sapiens]
gi|119614243|gb|EAW93837.1| heterogeneous nuclear ribonucleoprotein A2/B1, isoform CRA_c [Homo
sapiens]
gi|119614245|gb|EAW93839.1| heterogeneous nuclear ribonucleoprotein A2/B1, isoform CRA_c [Homo
sapiens]
gi|387542844|gb|AFJ72049.1| heterogeneous nuclear ribonucleoproteins A2/B1 isoform B1 [Macaca
mulatta]
gi|410225454|gb|JAA09946.1| heterogeneous nuclear ribonucleoprotein A2/B1 [Pan troglodytes]
gi|410343563|gb|JAA40595.1| heterogeneous nuclear ribonucleoprotein A2/B1 [Pan troglodytes]
Length = 353
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 55/111 (49%), Gaps = 7/111 (6%)
Query: 84 CIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALT---TTKSNSH- 139
C+ M KR+ +V F ++ V+ A+ H ID + +A+ + K +H
Sbjct: 50 CVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHV 109
Query: 140 ---SIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 187
+F+G I + EE LR FE G+ID + +I D+ + +GFG+V F
Sbjct: 110 TVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTF 160
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 53/138 (38%), Gaps = 52/138 (37%)
Query: 141 IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKA----------- 189
+FIG + FE EE LR +E G++ + ++RD + +GFG+V F +
Sbjct: 23 LFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAAR 82
Query: 190 -----------------------------------------EEEELRKAFESCGEIDNVR 208
EE LR FE G+ID +
Sbjct: 83 PHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIE 142
Query: 209 LIRDQHTNIGKGFGYVNF 226
+I D+ + +GFG+V F
Sbjct: 143 IITDRQSGKKRGFGFVTF 160
>gi|27695334|gb|AAH43069.1| Hnrpab protein [Mus musculus]
Length = 311
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 62/115 (53%), Gaps = 2/115 (1%)
Query: 85 IKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKSNSHSIFIG 144
IKM+ + R+ ++ FK+ SVEK L+ H +D I KA+ K IF+G
Sbjct: 106 IKMDP-NTGRSRGFGFILFKDSSSVEKVLDQKEHRLDGRVIDPKKAMAMKKDPVKKIFVG 164
Query: 145 NIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
+ EA EE++R+ F GEI+ + L D N +GF ++ FK EE+ ++K E
Sbjct: 165 GLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFK-EEDPVKKVLE 218
>gi|124028629|sp|O88569.2|ROA2_MOUSE RecName: Full=Heterogeneous nuclear ribonucleoproteins A2/B1;
Short=hnRNP A2/B1
gi|23266713|gb|AAN16352.1|AF452567_1 heterogeneous nuclear ribonucleoprotein A2/B1/B0 [Mus musculus]
Length = 353
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 55/111 (49%), Gaps = 7/111 (6%)
Query: 84 CIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALT---TTKSNSH- 139
C+ M KR+ +V F ++ V+ A+ H ID + +A+ + K +H
Sbjct: 50 CVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHV 109
Query: 140 ---SIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 187
+F+G I + EE LR FE G+ID + +I D+ + +GFG+V F
Sbjct: 110 TVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTF 160
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 53/138 (38%), Gaps = 52/138 (37%)
Query: 141 IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKA----------- 189
+FIG + FE EE LR +E G++ + ++RD + +GFG+V F +
Sbjct: 23 LFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAAR 82
Query: 190 -----------------------------------------EEEELRKAFESCGEIDNVR 208
EE LR FE G+ID +
Sbjct: 83 PHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIE 142
Query: 209 LIRDQHTNIGKGFGYVNF 226
+I D+ + +GFG+V F
Sbjct: 143 IITDRQSGKKRGFGFVTF 160
>gi|209882052|ref|XP_002142463.1| RNA recognition motif. family protein [Cryptosporidium muris RN66]
gi|209558069|gb|EEA08114.1| RNA recognition motif. family protein [Cryptosporidium muris RN66]
Length = 308
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 70/135 (51%), Gaps = 9/135 (6%)
Query: 62 GEVETVRFRSVPV-ADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESV-EKALEMNGHV 119
++E++RFRS+PV + RK + K + NAY+ K+ V E + G +
Sbjct: 113 ADIESIRFRSLPVHPKFSHNRKLGAILEGFSCKSDSKNAYIVLKDSSKVPELVKKFTGII 172
Query: 120 IDEHTIRVDKALTTTKSN----SHSIFIGNIPFEAEEEELRK-AFESCGE--IDNVRLIR 172
+ HT+R+ A N +IF+GN+P E+ELR+ ++ G +D VR++R
Sbjct: 173 LAGHTMRLSPAYIVDNFNIFDRKRTIFVGNLPSLCSEDELRQFVMQNIGTNCVDAVRIVR 232
Query: 173 DQHTNIGKGFGYVNF 187
+ T KGFG++ F
Sbjct: 233 SKITGKTKGFGFILF 247
>gi|157059865|dbj|BAF79678.1| heterogeneous nuclear ribonucleoprotein B0b [Rattus norvegicus]
Length = 313
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 55/111 (49%), Gaps = 7/111 (6%)
Query: 84 CIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALT---TTKSNSH- 139
C+ M KR+ +V F ++ V+ A+ H ID + +A+ + K +H
Sbjct: 50 CVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHV 109
Query: 140 ---SIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 187
+F+G I + EE LR FE G+ID + +I D+ + +GFG+V F
Sbjct: 110 TVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTF 160
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 53/138 (38%), Gaps = 52/138 (37%)
Query: 141 IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKA----------- 189
+FIG + FE EE LR +E G++ + ++RD + +GFG+V F +
Sbjct: 23 LFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAAR 82
Query: 190 -----------------------------------------EEEELRKAFESCGEIDNVR 208
EE LR FE G+ID +
Sbjct: 83 PHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIE 142
Query: 209 LIRDQHTNIGKGFGYVNF 226
+I D+ + +GFG+V F
Sbjct: 143 IITDRQSGKKRGFGFVTF 160
>gi|354466972|ref|XP_003495945.1| PREDICTED: probable RNA-binding protein 19 [Cricetulus griseus]
gi|344237019|gb|EGV93122.1| putative RNA-binding protein 19 [Cricetulus griseus]
Length = 954
Score = 61.2 bits (147), Expect = 3e-07, Method: Composition-based stats.
Identities = 39/118 (33%), Positives = 64/118 (54%), Gaps = 17/118 (14%)
Query: 99 AYVRFKNLESVEKAL-EMNGHVIDEHTIRV-------DKALTTT-------KSNSHSIFI 143
+V +K E +KAL ++ GHV+D H + V +LT T K + I +
Sbjct: 770 GFVEYKKPEKAQKALKQLQGHVVDGHKLEVRISERATKPSLTPTRKKQVSKKQTTSKILV 829
Query: 144 GNIPFEAEEEELRKAFESCGEIDNVRLIRDQH-TNIGKGFGYVNFKAEEEELRKAFES 200
NIPF+A + E+R+ F + GE+ VRL + T +GFG+V+F +++ +KAF +
Sbjct: 830 RNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDF-VTKQDAKKAFNA 886
Score = 38.5 bits (88), Expect = 2.5, Method: Composition-based stats.
Identities = 26/103 (25%), Positives = 46/103 (44%), Gaps = 6/103 (5%)
Query: 117 GHVIDEHTIRVDKALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHT 176
G + EH D A +S +F+ N+ + + EE+L K F + G + + D T
Sbjct: 384 GRTLGEHEEEEDLA------DSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLT 437
Query: 177 NIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGK 219
KGF ++ F E ++ E G++ R++ + I K
Sbjct: 438 KKPKGFAFITFMFPEHAVKAYAEVDGQVFQGRMLHVLPSTIKK 480
>gi|3377279|dbj|BAA32032.1| AlF-C1 [Rattus norvegicus]
Length = 331
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 62/115 (53%), Gaps = 2/115 (1%)
Query: 85 IKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKSNSHSIFIG 144
IKM+ + R+ ++ FK+ SVEK L+ H +D I KA+ K IF+G
Sbjct: 105 IKMDP-NTGRSRGFGFILFKDSSSVEKVLDQKEHRLDGRVIDPKKAMAMKKDPVKKIFVG 163
Query: 145 NIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
+ EA EE++R+ F GEI+ + L D N +GF ++ FK EE+ ++K E
Sbjct: 164 GLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFK-EEDPVKKVLE 217
>gi|334349111|ref|XP_001368260.2| PREDICTED: heterogeneous nuclear ribonucleoproteins A2/B1-like
[Monodelphis domestica]
Length = 341
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 55/111 (49%), Gaps = 7/111 (6%)
Query: 84 CIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALT---TTKSNSH- 139
C+ M KR+ +V F ++ V+ A+ H ID + +A+ + K +H
Sbjct: 38 CVVMRDPASKRSRGFGFVTFSSMAEVDAAMSARPHSIDGRVVEPKRAVAREESGKPGAHV 97
Query: 140 ---SIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 187
+F+G I + EE LR FE G+ID + +I D+ + +GFG+V F
Sbjct: 98 TVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTF 148
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 53/138 (38%), Gaps = 52/138 (37%)
Query: 141 IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKA----------- 189
+FIG + FE EE LR +E G++ + ++RD + +GFG+V F +
Sbjct: 11 LFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMSAR 70
Query: 190 -----------------------------------------EEEELRKAFESCGEIDNVR 208
EE LR FE G+ID +
Sbjct: 71 PHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIE 130
Query: 209 LIRDQHTNIGKGFGYVNF 226
+I D+ + +GFG+V F
Sbjct: 131 IITDRQSGKKRGFGFVTF 148
>gi|149634029|ref|XP_001510026.1| PREDICTED: heterogeneous nuclear ribonucleoproteins A2/B1-like
isoform 1 [Ornithorhynchus anatinus]
gi|345323587|ref|XP_003430725.1| PREDICTED: heterogeneous nuclear ribonucleoproteins A2/B1-like
isoform 2 [Ornithorhynchus anatinus]
Length = 344
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 55/111 (49%), Gaps = 7/111 (6%)
Query: 84 CIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALT---TTKSNSH- 139
C+ M KR+ +V F ++ V+ A+ H ID + +A+ + K +H
Sbjct: 38 CVVMRDPASKRSRGFGFVTFSSMAEVDAAMSARPHSIDGRVVEPKRAVAREESGKPGAHV 97
Query: 140 ---SIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 187
+F+G I + EE LR FE G+ID + +I D+ + +GFG+V F
Sbjct: 98 TVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTF 148
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 53/138 (38%), Gaps = 52/138 (37%)
Query: 141 IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKA----------- 189
+FIG + FE EE LR +E G++ + ++RD + +GFG+V F +
Sbjct: 11 LFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMSAR 70
Query: 190 -----------------------------------------EEEELRKAFESCGEIDNVR 208
EE LR FE G+ID +
Sbjct: 71 PHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIE 130
Query: 209 LIRDQHTNIGKGFGYVNF 226
+I D+ + +GFG+V F
Sbjct: 131 IITDRQSGKKRGFGFVTF 148
>gi|345323589|ref|XP_003430726.1| PREDICTED: heterogeneous nuclear ribonucleoproteins A2/B1-like
isoform 3 [Ornithorhynchus anatinus]
Length = 302
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 55/111 (49%), Gaps = 7/111 (6%)
Query: 84 CIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALT---TTKSNSH- 139
C+ M KR+ +V F ++ V+ A+ H ID + +A+ + K +H
Sbjct: 38 CVVMRDPASKRSRGFGFVTFSSMAEVDAAMSARPHSIDGRVVEPKRAVAREESGKPGAHV 97
Query: 140 ---SIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 187
+F+G I + EE LR FE G+ID + +I D+ + +GFG+V F
Sbjct: 98 TVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTF 148
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 53/138 (38%), Gaps = 52/138 (37%)
Query: 141 IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKA----------- 189
+FIG + FE EE LR +E G++ + ++RD + +GFG+V F +
Sbjct: 11 LFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMSAR 70
Query: 190 -----------------------------------------EEEELRKAFESCGEIDNVR 208
EE LR FE G+ID +
Sbjct: 71 PHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIE 130
Query: 209 LIRDQHTNIGKGFGYVNF 226
+I D+ + +GFG+V F
Sbjct: 131 IITDRQSGKKRGFGFVTF 148
>gi|320586227|gb|EFW98906.1| nucleolar protein 12 [Grosmannia clavigera kw1407]
Length = 530
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 80/177 (45%), Gaps = 14/177 (7%)
Query: 59 KPYGE------VETVRFRSVPVADITLPRKACIKMNKVHEKRTNM-NAYVRFKNLESVEK 111
KP G VE++RFRSVP A +P++A V NAY + + +
Sbjct: 195 KPAGPTPVLATVESLRFRSVPFATAAMPKRAAFITKAVMGATAQATNAYAVYSTAAAARQ 254
Query: 112 ALE-MNGHVIDEHTIRVDK-ALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVR 169
A+ +NG V+ +R D A + +F+GN+ F +EE + E+ + D
Sbjct: 255 AVRQLNGTVVLGRHLRADSVAHPAAVDHRRCVFVGNLGFMDDEEVMVTPDEAKTDEDG-- 312
Query: 170 LIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 226
+ K F V EE R + G +++VR++RD T +GKGF YV F
Sbjct: 313 --QPAEPTKRKRF-KVPMDVEEGLWRTFGKHAGAVESVRVVRDPATRVGKGFAYVQF 366
>gi|340378651|ref|XP_003387841.1| PREDICTED: uncharacterized RNA-binding protein C660.15-like
[Amphimedon queenslandica]
Length = 409
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 53/103 (51%), Gaps = 8/103 (7%)
Query: 93 KRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKAL--------TTTKSNSHSIFIG 144
+R+ +V + + ESVEK L H IDE + KA+ T S S +F+G
Sbjct: 129 RRSRGFGFVTYNSRESVEKCLAAGPHYIDERLVETKKAVPREETPKETDPSSKSKKVFLG 188
Query: 145 NIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 187
+ + +EEL +A + GEI+ V LI D N +GFG++ F
Sbjct: 189 GLHLDTTKEELMEAAKHIGEIEEVSLIIDPERNKPRGFGFITF 231
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/203 (21%), Positives = 74/203 (36%), Gaps = 61/203 (30%)
Query: 85 IKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTK--------S 136
+ M R ++ + + ESVE+ L H IDE + +A+ + S
Sbjct: 29 VVMKDPQTNRPRGFGFITYTSPESVERCLAEGPHEIDERIVETKRAVPREETRQEPEPSS 88
Query: 137 NSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEE----- 191
S +FIG + A +++L + + G I + ++ D T +GFG+V + + E
Sbjct: 89 KSKKMFIGGLTTSATKDKLERYYGQWGMIIDAAVVTDPQTRRSRGFGFVTYNSRESVEKC 148
Query: 192 ------------------------------------------------EELRKAFESCGE 203
EEL +A + GE
Sbjct: 149 LAAGPHYIDERLVETKKAVPREETPKETDPSSKSKKVFLGGLHLDTTKEELMEAAKHIGE 208
Query: 204 IDNVRLIRDQHTNIGKGFGYVNF 226
I+ V LI D N +GFG++ F
Sbjct: 209 IEEVSLIIDPERNKPRGFGFITF 231
>gi|291245052|ref|XP_002742405.1| PREDICTED: MGC81970 protein-like isoform 2 [Saccoglossus
kowalevskii]
Length = 444
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 61/120 (50%), Gaps = 14/120 (11%)
Query: 93 KRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKA-------------LTTTKSNSH 139
+R+ AYV F++ SV AL ++G + I V + L S
Sbjct: 85 RRSKGIAYVEFQDKNSVPLALGLSGQKLLSIPIMVQASQAEKNRAAQNSQNLQKGNSGPM 144
Query: 140 SIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
+++G++ F EE LR FE G+IDN++L++D T KG+G++ F + E+ +KA E
Sbjct: 145 RLYVGSLHFNITEEMLRGIFEPFGKIDNIQLMKDNETGRSKGYGFITFH-DAEDAKKALE 203
>gi|440899276|gb|ELR50605.1| Heterogeneous nuclear ribonucleoproteins A2/B1, partial [Bos
grunniens mutus]
Length = 339
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 55/111 (49%), Gaps = 7/111 (6%)
Query: 84 CIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALT---TTKSNSH- 139
C+ M KR+ +V F ++ V+ A+ H ID + +A+ + K +H
Sbjct: 36 CVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHV 95
Query: 140 ---SIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 187
+F+G I + EE LR FE G+ID + +I D+ + +GFG+V F
Sbjct: 96 TVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTF 146
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 53/138 (38%), Gaps = 52/138 (37%)
Query: 141 IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKA----------- 189
+FIG + FE EE LR +E G++ + ++RD + +GFG+V F +
Sbjct: 9 LFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAAR 68
Query: 190 -----------------------------------------EEEELRKAFESCGEIDNVR 208
EE LR FE G+ID +
Sbjct: 69 PHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIE 128
Query: 209 LIRDQHTNIGKGFGYVNF 226
+I D+ + +GFG+V F
Sbjct: 129 IITDRQSGKKRGFGFVTF 146
>gi|197101465|ref|NP_001127331.1| heterogeneous nuclear ribonucleoproteins A2/B1 [Pongo abelii]
gi|75070806|sp|Q5RBU8.1|ROA2_PONAB RecName: Full=Heterogeneous nuclear ribonucleoproteins A2/B1;
Short=hnRNP A2/B1
gi|55728019|emb|CAH90762.1| hypothetical protein [Pongo abelii]
Length = 353
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 55/111 (49%), Gaps = 7/111 (6%)
Query: 84 CIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALT---TTKSNSH- 139
C+ M KR+ +V F ++ V+ A+ H ID + +A+ + K +H
Sbjct: 50 CVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHV 109
Query: 140 ---SIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 187
+F+G I + EE LR FE G+ID + +I D+ + +GFG+V F
Sbjct: 110 TVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTF 160
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 53/138 (38%), Gaps = 52/138 (37%)
Query: 141 IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKA----------- 189
+FIG + FE EE LR +E G++ + ++RD + +GFG+V F +
Sbjct: 23 LFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAAR 82
Query: 190 -----------------------------------------EEEELRKAFESCGEIDNVR 208
EE LR FE G+ID +
Sbjct: 83 PHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIE 142
Query: 209 LIRDQHTNIGKGFGYVNF 226
+I D+ + +GFG+V F
Sbjct: 143 IITDRQSGKKRGFGFVTF 160
>gi|449492608|ref|XP_002192177.2| PREDICTED: heterogeneous nuclear ribonucleoproteins A2/B1
[Taeniopygia guttata]
Length = 309
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 55/111 (49%), Gaps = 7/111 (6%)
Query: 84 CIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALT---TTKSNSH- 139
C+ M KR+ +V F ++ V+ A+ H ID + +A+ + K +H
Sbjct: 46 CVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHTIDGRVVEPKRAVAREESGKPGAHV 105
Query: 140 ---SIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 187
+F+G I + EE LR FE G+ID + +I D+ + +GFG+V F
Sbjct: 106 TVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTF 156
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 53/138 (38%), Gaps = 52/138 (37%)
Query: 141 IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKA----------- 189
+FIG + FE EE LR +E G++ + ++RD + +GFG+V F +
Sbjct: 19 LFIGGLSFETTEESLRSYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAAR 78
Query: 190 -----------------------------------------EEEELRKAFESCGEIDNVR 208
EE LR FE G+ID +
Sbjct: 79 PHTIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIE 138
Query: 209 LIRDQHTNIGKGFGYVNF 226
+I D+ + +GFG+V F
Sbjct: 139 IITDRQSGKKRGFGFVTF 156
>gi|4504447|ref|NP_002128.1| heterogeneous nuclear ribonucleoproteins A2/B1 isoform A2 [Homo
sapiens]
gi|114051756|ref|NP_001039440.1| heterogeneous nuclear ribonucleoproteins A2/B1 [Bos taurus]
gi|73976082|ref|XP_863847.1| PREDICTED: heterogeneous nuclear ribonucleoproteins A2/B1 isoform 3
[Canis lupus familiaris]
gi|332242620|ref|XP_003270483.1| PREDICTED: heterogeneous nuclear ribonucleoproteins A2/B1 isoform 1
[Nomascus leucogenys]
gi|332864909|ref|XP_003318407.1| PREDICTED: heterogeneous nuclear ribonucleoproteins A2/B1 isoform 1
[Pan troglodytes]
gi|338724111|ref|XP_003364873.1| PREDICTED: heterogeneous nuclear ribonucleoproteins A2/B1 isoform 2
[Equus caballus]
gi|350595419|ref|XP_003484106.1| PREDICTED: heterogeneous nuclear ribonucleoproteins A2/B1 isoform 2
[Sus scrofa]
gi|390466619|ref|XP_003733620.1| PREDICTED: heterogeneous nuclear ribonucleoproteins A2/B1 isoform 2
[Callithrix jacchus]
gi|397472888|ref|XP_003807964.1| PREDICTED: heterogeneous nuclear ribonucleoproteins A2/B1 isoform 1
[Pan paniscus]
gi|402863875|ref|XP_003896219.1| PREDICTED: heterogeneous nuclear ribonucleoproteins A2/B1 isoform 1
[Papio anubis]
gi|403287969|ref|XP_003935191.1| PREDICTED: heterogeneous nuclear ribonucleoproteins A2/B1 isoform 1
[Saimiri boliviensis boliviensis]
gi|410952506|ref|XP_003982920.1| PREDICTED: heterogeneous nuclear ribonucleoproteins A2/B1 isoform 1
[Felis catus]
gi|426355697|ref|XP_004045246.1| PREDICTED: heterogeneous nuclear ribonucleoproteins A2/B1 isoform 1
[Gorilla gorilla gorilla]
gi|122145945|sp|Q2HJ60.1|ROA2_BOVIN RecName: Full=Heterogeneous nuclear ribonucleoproteins A2/B1;
Short=hnRNP A2/B1
gi|337449|gb|AAA36574.1| hnRNP A2 protein [Homo sapiens]
gi|500638|gb|AAB60650.1| hnRNP protein A2 [Homo sapiens]
gi|565644|dbj|BAA06032.1| hnRNP A2 protein [Homo sapiens]
gi|87578315|gb|AAI13299.1| Heterogeneous nuclear ribonucleoprotein A2/B1 [Bos taurus]
gi|119614241|gb|EAW93835.1| heterogeneous nuclear ribonucleoprotein A2/B1, isoform CRA_b [Homo
sapiens]
gi|119614242|gb|EAW93836.1| heterogeneous nuclear ribonucleoprotein A2/B1, isoform CRA_b [Homo
sapiens]
gi|149033380|gb|EDL88181.1| rCG52521, isoform CRA_a [Rattus norvegicus]
gi|149033381|gb|EDL88182.1| rCG52521, isoform CRA_a [Rattus norvegicus]
gi|296488431|tpg|DAA30544.1| TPA: heterogeneous nuclear ribonucleoproteins A2/B1 [Bos taurus]
gi|387542842|gb|AFJ72048.1| heterogeneous nuclear ribonucleoproteins A2/B1 isoform A2 [Macaca
mulatta]
gi|410225452|gb|JAA09945.1| heterogeneous nuclear ribonucleoprotein A2/B1 [Pan troglodytes]
gi|410343561|gb|JAA40594.1| heterogeneous nuclear ribonucleoprotein A2/B1 [Pan troglodytes]
gi|410343565|gb|JAA40596.1| heterogeneous nuclear ribonucleoprotein A2/B1 [Pan troglodytes]
gi|410343567|gb|JAA40597.1| heterogeneous nuclear ribonucleoprotein A2/B1 [Pan troglodytes]
gi|410343569|gb|JAA40598.1| heterogeneous nuclear ribonucleoprotein A2/B1 [Pan troglodytes]
gi|456753293|gb|JAA74140.1| heterogeneous nuclear ribonucleoprotein A2/B1 [Sus scrofa]
Length = 341
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 55/111 (49%), Gaps = 7/111 (6%)
Query: 84 CIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALT---TTKSNSH- 139
C+ M KR+ +V F ++ V+ A+ H ID + +A+ + K +H
Sbjct: 38 CVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHV 97
Query: 140 ---SIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 187
+F+G I + EE LR FE G+ID + +I D+ + +GFG+V F
Sbjct: 98 TVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTF 148
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 53/138 (38%), Gaps = 52/138 (37%)
Query: 141 IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKA----------- 189
+FIG + FE EE LR +E G++ + ++RD + +GFG+V F +
Sbjct: 11 LFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAAR 70
Query: 190 -----------------------------------------EEEELRKAFESCGEIDNVR 208
EE LR FE G+ID +
Sbjct: 71 PHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIE 130
Query: 209 LIRDQHTNIGKGFGYVNF 226
+I D+ + +GFG+V F
Sbjct: 131 IITDRQSGKKRGFGFVTF 148
>gi|109134362|ref|NP_058086.2| heterogeneous nuclear ribonucleoproteins A2/B1 isoform 1 [Mus
musculus]
gi|309267107|ref|XP_001473875.2| PREDICTED: heterogeneous nuclear ribonucleoproteins A2/B1-like
isoform 1 [Mus musculus]
gi|21071091|gb|AAK98601.2| heterogeneous nuclear ribonucleoprotein A2/B1 [Mus musculus]
gi|148666222|gb|EDK98638.1| mCG119114, isoform CRA_b [Mus musculus]
gi|148666223|gb|EDK98639.1| mCG119114, isoform CRA_b [Mus musculus]
Length = 341
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 55/111 (49%), Gaps = 7/111 (6%)
Query: 84 CIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALT---TTKSNSH- 139
C+ M KR+ +V F ++ V+ A+ H ID + +A+ + K +H
Sbjct: 38 CVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHV 97
Query: 140 ---SIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 187
+F+G I + EE LR FE G+ID + +I D+ + +GFG+V F
Sbjct: 98 TVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTF 148
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 53/138 (38%), Gaps = 52/138 (37%)
Query: 141 IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKA----------- 189
+FIG + FE EE LR +E G++ + ++RD + +GFG+V F +
Sbjct: 11 LFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAAR 70
Query: 190 -----------------------------------------EEEELRKAFESCGEIDNVR 208
EE LR FE G+ID +
Sbjct: 71 PHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIE 130
Query: 209 LIRDQHTNIGKGFGYVNF 226
+I D+ + +GFG+V F
Sbjct: 131 IITDRQSGKKRGFGFVTF 148
>gi|157059863|dbj|BAF79677.1| heterogeneous nuclear ribonucleoprotein B0a [Rattus norvegicus]
Length = 301
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 55/111 (49%), Gaps = 7/111 (6%)
Query: 84 CIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALT---TTKSNSH- 139
C+ M KR+ +V F ++ V+ A+ H ID + +A+ + K +H
Sbjct: 38 CVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHV 97
Query: 140 ---SIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 187
+F+G I + EE LR FE G+ID + +I D+ + +GFG+V F
Sbjct: 98 TVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTF 148
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 53/138 (38%), Gaps = 52/138 (37%)
Query: 141 IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKA----------- 189
+FIG + FE EE LR +E G++ + ++RD + +GFG+V F +
Sbjct: 11 LFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAAR 70
Query: 190 -----------------------------------------EEEELRKAFESCGEIDNVR 208
EE LR FE G+ID +
Sbjct: 71 PHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIE 130
Query: 209 LIRDQHTNIGKGFGYVNF 226
+I D+ + +GFG+V F
Sbjct: 131 IITDRQSGKKRGFGFVTF 148
>gi|32880197|ref|NP_872591.1| heterogeneous nuclear ribonucleoproteins A2/B1 isoform 2 [Mus
musculus]
gi|26354140|dbj|BAC40700.1| unnamed protein product [Mus musculus]
gi|223461557|gb|AAI41254.1| Hnrnpa2b1 protein [Mus musculus]
Length = 301
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 55/111 (49%), Gaps = 7/111 (6%)
Query: 84 CIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALT---TTKSNSH- 139
C+ M KR+ +V F ++ V+ A+ H ID + +A+ + K +H
Sbjct: 38 CVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHV 97
Query: 140 ---SIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 187
+F+G I + EE LR FE G+ID + +I D+ + +GFG+V F
Sbjct: 98 TVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTF 148
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 53/138 (38%), Gaps = 52/138 (37%)
Query: 141 IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKA----------- 189
+FIG + FE EE LR +E G++ + ++RD + +GFG+V F +
Sbjct: 11 LFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAAR 70
Query: 190 -----------------------------------------EEEELRKAFESCGEIDNVR 208
EE LR FE G+ID +
Sbjct: 71 PHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIE 130
Query: 209 LIRDQHTNIGKGFGYVNF 226
+I D+ + +GFG+V F
Sbjct: 131 IITDRQSGKKRGFGFVTF 148
>gi|296196619|ref|XP_002745917.1| PREDICTED: heterogeneous nuclear ribonucleoproteins A2/B1-like
[Callithrix jacchus]
Length = 341
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 55/111 (49%), Gaps = 7/111 (6%)
Query: 84 CIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALT---TTKSNSH- 139
C+ M KR+ +V F ++ V+ A+ H ID + +A+ + K +H
Sbjct: 38 CVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHV 97
Query: 140 ---SIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 187
+F+G I + EE LR FE G+ID + +I D+ + +GFG+V F
Sbjct: 98 TVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTF 148
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 53/138 (38%), Gaps = 52/138 (37%)
Query: 141 IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKA----------- 189
+FIG + FE EE LR +E G++ + ++RD + +GFG+V F +
Sbjct: 11 LFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAAR 70
Query: 190 -----------------------------------------EEEELRKAFESCGEIDNVR 208
EE LR FE G+ID +
Sbjct: 71 PHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIE 130
Query: 209 LIRDQHTNIGKGFGYVNF 226
+I D+ + +GFG+V F
Sbjct: 131 IITDRQSGKKRGFGFVTF 148
>gi|281349549|gb|EFB25133.1| hypothetical protein PANDA_000670 [Ailuropoda melanoleuca]
Length = 323
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 55/111 (49%), Gaps = 7/111 (6%)
Query: 84 CIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALT---TTKSNSH- 139
C+ M KR+ +V F ++ V+ A+ H ID + +A+ + K +H
Sbjct: 38 CVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHV 97
Query: 140 ---SIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 187
+F+G I + EE LR FE G+ID + +I D+ + +GFG+V F
Sbjct: 98 TVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTF 148
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 55/148 (37%), Gaps = 52/148 (35%)
Query: 131 LTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKA- 189
L K +FIG + FE EE LR +E G++ + ++RD + +GFG+V F +
Sbjct: 1 LQREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSM 60
Query: 190 ---------------------------------------------------EEEELRKAF 198
EE LR F
Sbjct: 61 AEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYF 120
Query: 199 ESCGEIDNVRLIRDQHTNIGKGFGYVNF 226
E G+ID + +I D+ + +GFG+V F
Sbjct: 121 EEYGKIDTIEIITDRQSGKKRGFGFVTF 148
>gi|408399266|gb|EKJ78389.1| hypothetical protein FPSE_01494 [Fusarium pseudograminearum CS3096]
Length = 498
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 66/141 (46%), Gaps = 24/141 (17%)
Query: 94 RTNMNAYVRFKNLESVEKALE-MNGHVIDEHTIRVDKA--------------------LT 132
R+ YV F + S KA E MNG ++ I +D A
Sbjct: 274 RSRGFGYVDFNDAASCTKAYETMNGTELEGRAINLDYANARPAEANPAARAADRAQRHGD 333
Query: 133 TTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEE 192
T S ++F+GN+PF+ +++ +R FE + +VRL D + KGFGYV+F + E
Sbjct: 334 TVSPESDTLFVGNLPFDVDQDSVRAFFEEVAAVASVRLPTDPDSGNLKGFGYVSF-SSVE 392
Query: 193 ELRKAFES--CGEIDNVRLIR 211
E ++ FE+ I N R+ R
Sbjct: 393 EAKQVFEAKNGAPIGNGRMSR 413
>gi|157059859|dbj|BAF79675.1| heterogeneous nuclear ribonucleoprotein A2 [Rattus norvegicus]
Length = 341
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 55/111 (49%), Gaps = 7/111 (6%)
Query: 84 CIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALT---TTKSNSH- 139
C+ M KR+ +V F ++ V+ A+ H ID + +A+ + K +H
Sbjct: 38 CVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHV 97
Query: 140 ---SIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 187
+F+G I + EE LR FE G+ID + +I D+ + +GFG+V F
Sbjct: 98 TVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTF 148
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 53/138 (38%), Gaps = 52/138 (37%)
Query: 141 IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKA----------- 189
+FIG + FE EE LR +E G++ + ++RD + +GFG+V F +
Sbjct: 11 LFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAAR 70
Query: 190 -----------------------------------------EEEELRKAFESCGEIDNVR 208
EE LR FE G+ID +
Sbjct: 71 PHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIE 130
Query: 209 LIRDQHTNIGKGFGYVNF 226
+I D+ + +GFG+V F
Sbjct: 131 IITDRQSGKKRGFGFVTF 148
>gi|410058693|ref|XP_003951016.1| PREDICTED: heterogeneous nuclear ribonucleoproteins A2/B1 [Pan
troglodytes]
gi|119614240|gb|EAW93834.1| heterogeneous nuclear ribonucleoprotein A2/B1, isoform CRA_a [Homo
sapiens]
Length = 301
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 55/111 (49%), Gaps = 7/111 (6%)
Query: 84 CIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALT---TTKSNSH- 139
C+ M KR+ +V F ++ V+ A+ H ID + +A+ + K +H
Sbjct: 38 CVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHV 97
Query: 140 ---SIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 187
+F+G I + EE LR FE G+ID + +I D+ + +GFG+V F
Sbjct: 98 TVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTF 148
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 53/138 (38%), Gaps = 52/138 (37%)
Query: 141 IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKA----------- 189
+FIG + FE EE LR +E G++ + ++RD + +GFG+V F +
Sbjct: 11 LFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAAR 70
Query: 190 -----------------------------------------EEEELRKAFESCGEIDNVR 208
EE LR FE G+ID +
Sbjct: 71 PHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIE 130
Query: 209 LIRDQHTNIGKGFGYVNF 226
+I D+ + +GFG+V F
Sbjct: 131 IITDRQSGKKRGFGFVTF 148
>gi|6754222|ref|NP_034578.1| heterogeneous nuclear ribonucleoprotein A/B isoform 2 [Mus
musculus]
gi|729000|sp|Q99020.1|ROAA_MOUSE RecName: Full=Heterogeneous nuclear ribonucleoprotein A/B;
Short=hnRNP A/B; AltName: Full=CArG-binding factor-A;
Short=CBF-A
gi|220363|dbj|BAA14181.1| CArG-binding factor-A [Mus musculus]
gi|840648|gb|AAA92146.1| CArG box-binding factor [Mus musculus]
gi|12850708|dbj|BAB28821.1| unnamed protein product [Mus musculus]
gi|89275692|gb|ABD66225.1| S1 protein D2 [Mus musculus]
gi|148701716|gb|EDL33663.1| heterogeneous nuclear ribonucleoprotein A/B, isoform CRA_c [Mus
musculus]
Length = 285
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 62/115 (53%), Gaps = 2/115 (1%)
Query: 85 IKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKSNSHSIFIG 144
IKM+ + R+ ++ FK+ SVEK L+ H +D I KA+ K IF+G
Sbjct: 106 IKMDP-NTGRSRGFGFILFKDSSSVEKVLDQKEHRLDGRVIDPKKAMAMKKDPVKKIFVG 164
Query: 145 NIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
+ EA EE++R+ F GEI+ + L D N +GF ++ FK EE+ ++K E
Sbjct: 165 GLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFK-EEDPVKKVLE 218
>gi|140971918|ref|NP_112620.2| heterogeneous nuclear ribonucleoprotein A/B [Rattus norvegicus]
gi|392351173|ref|XP_003750864.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A/B-like isoform
1 [Rattus norvegicus]
gi|6911221|gb|AAF31437.1|AF216753_1 CArG-binding factor A [Rattus norvegicus]
gi|6562847|emb|CAB62554.1| heterogeneous nuclear ribonucleoprotein [Rattus norvegicus]
gi|44890256|gb|AAH66664.1| Hnrpab protein [Rattus norvegicus]
gi|149052497|gb|EDM04314.1| rCG34663, isoform CRA_b [Rattus norvegicus]
Length = 285
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 62/115 (53%), Gaps = 2/115 (1%)
Query: 85 IKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKSNSHSIFIG 144
IKM+ + R+ ++ FK+ SVEK L+ H +D I KA+ K IF+G
Sbjct: 106 IKMDP-NTGRSRGFGFILFKDSSSVEKVLDQKEHRLDGRVIDPKKAMAMKKDPVKKIFVG 164
Query: 145 NIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
+ EA EE++R+ F GEI+ + L D N +GF ++ FK EE+ ++K E
Sbjct: 165 GLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFK-EEDPVKKVLE 218
>gi|3329498|gb|AAC26867.1| heterogenous nuclear ribonucleoprotein A2/B1 [Mus musculus]
Length = 341
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 55/111 (49%), Gaps = 7/111 (6%)
Query: 84 CIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALT---TTKSNSH- 139
C+ M KR+ +V F ++ V+ A+ H ID + +A+ + K +H
Sbjct: 38 CVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHV 97
Query: 140 ---SIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 187
+F+G I + EE LR FE G+ID + +I D+ + +GFG+V F
Sbjct: 98 TVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTF 148
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 53/138 (38%), Gaps = 52/138 (37%)
Query: 141 IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKA----------- 189
+FIG + FE EE LR +E G++ + ++RD + +GFG+V F +
Sbjct: 11 LFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAAR 70
Query: 190 -----------------------------------------EEEELRKAFESCGEIDNVR 208
EE LR FE G+ID +
Sbjct: 71 PHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIE 130
Query: 209 LIRDQHTNIGKGFGYVNF 226
+I D+ + +GFG+V F
Sbjct: 131 IITDRQSGKKRGFGFVTF 148
>gi|219519440|gb|AAI45589.1| Heterogeneous nuclear ribonucleoprotein A2/B1 [Mus musculus]
Length = 341
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 55/111 (49%), Gaps = 7/111 (6%)
Query: 84 CIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALT---TTKSNSH- 139
C+ M KR+ +V F ++ V+ A+ H ID + +A+ + K +H
Sbjct: 38 CVVMRDPASKRSRGFGFVTFSSMAEVDGAMAARPHSIDGRVVEPKRAVAREESGKPGAHV 97
Query: 140 ---SIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 187
+F+G I + EE LR FE G+ID + +I D+ + +GFG+V F
Sbjct: 98 TVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTF 148
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 53/138 (38%), Gaps = 52/138 (37%)
Query: 141 IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKA----------- 189
+FIG + FE EE LR +E G++ + ++RD + +GFG+V F +
Sbjct: 11 LFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDGAMAAR 70
Query: 190 -----------------------------------------EEEELRKAFESCGEIDNVR 208
EE LR FE G+ID +
Sbjct: 71 PHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIE 130
Query: 209 LIRDQHTNIGKGFGYVNF 226
+I D+ + +GFG+V F
Sbjct: 131 IITDRQSGKKRGFGFVTF 148
>gi|26345118|dbj|BAC36208.1| unnamed protein product [Mus musculus]
Length = 285
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 62/115 (53%), Gaps = 2/115 (1%)
Query: 85 IKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKSNSHSIFIG 144
IKM+ + R+ ++ FK+ SVEK L+ H +D I KA+ K IF+G
Sbjct: 106 IKMDP-NTGRSRGFGFILFKDSSSVEKVLDQKEHRLDGRVIDPKKAMAMKKDPVKKIFVG 164
Query: 145 NIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
+ EA EE++R+ F GEI+ + L D N +GF ++ FK EE+ ++K E
Sbjct: 165 GLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFK-EEDPVKKVLE 218
>gi|74209393|dbj|BAE23274.1| unnamed protein product [Mus musculus]
Length = 301
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 55/111 (49%), Gaps = 7/111 (6%)
Query: 84 CIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALT---TTKSNSH- 139
C+ M KR+ +V F ++ V+ A+ H ID + +A+ + K +H
Sbjct: 38 CVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHV 97
Query: 140 ---SIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 187
+F+G I + EE LR FE G+ID + +I D+ + +GFG+V F
Sbjct: 98 TVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTF 148
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 53/138 (38%), Gaps = 52/138 (37%)
Query: 141 IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKA----------- 189
+FIG + FE EE LR +E G++ + ++RD + +GFG+V F +
Sbjct: 11 LFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAAR 70
Query: 190 -----------------------------------------EEEELRKAFESCGEIDNVR 208
EE LR FE G+ID +
Sbjct: 71 PHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIE 130
Query: 209 LIRDQHTNIGKGFGYVNF 226
+I D+ + +GFG+V F
Sbjct: 131 IITDRQSGKKRGFGFVTF 148
>gi|393215302|gb|EJD00793.1| RNA-binding domain-containing protein [Fomitiporia mediterranea
MF3/22]
Length = 589
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 61/129 (47%), Gaps = 17/129 (13%)
Query: 99 AYVRFKNLESVEKALEMNGHV-IDEHTIRVDKALT--------------TTKSNSHSIFI 143
+V F E A+ +NG ID + +DK +T + S +F+
Sbjct: 365 GFVEFATAEGANAAVALNGQKEIDGRAVNLDKTSAKPADPERRAKAFGDSTSAPSSVLFV 424
Query: 144 GNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGE 203
GN+ F+ E+ L + F GE+ +VRL D+ T KG+GYV F + E +KAFE
Sbjct: 425 GNVSFDMTEDGLWEVFAEYGEVKSVRLPTDRDTQRLKGYGYVEF-VDVESAKKAFEGARG 483
Query: 204 ID-NVRLIR 211
+D R IR
Sbjct: 484 MDVGGRTIR 492
Score = 45.1 bits (105), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 36/60 (60%)
Query: 132 TTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEE 191
+ ++ +S ++F+G + + + + L + F CGE+ + R+ D++T +GFG+V F E
Sbjct: 314 SDSQEDSKTVFVGRLSWNVDNDWLAQEFADCGEVVSARVQMDRNTGKSRGFGFVEFATAE 373
>gi|307178104|gb|EFN66931.1| Nucleolysin TIAR [Camponotus floridanus]
Length = 393
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 65/131 (49%), Gaps = 11/131 (8%)
Query: 90 VHEKRTNMNAYVRFKNLESVEKALE-MNGHVIDEHTIRVDKALTTTK------SNSHSIF 142
+ E + A+V F N +S AL MN + ++V+ A + SN H IF
Sbjct: 40 IREPGNDPYAFVEFTNHQSAATALAAMNKRSFLDKEMKVNWATSPGNQPKLDTSNHHHIF 99
Query: 143 IGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF--KAEEEELRKAFES 200
+G++ E E + L++AF GEI N R++RD T KG+ +V+F K+E E A
Sbjct: 100 VGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKSEAEAAINAMN- 158
Query: 201 CGEIDNVRLIR 211
G+ R IR
Sbjct: 159 -GQWLGSRSIR 168
>gi|343961425|dbj|BAK62302.1| heterogeneous nuclear ribonucleoproteins A2/B1 [Pan troglodytes]
Length = 301
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 55/111 (49%), Gaps = 7/111 (6%)
Query: 84 CIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALT---TTKSNSH- 139
C+ M KR+ +V F ++ V+ A+ H ID + +A+ + K +H
Sbjct: 38 CVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHV 97
Query: 140 ---SIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 187
+F+G I + EE LR FE G+ID + +I D+ + +GFG+V F
Sbjct: 98 TVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTF 148
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 53/138 (38%), Gaps = 52/138 (37%)
Query: 141 IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKA----------- 189
+FIG + FE EE LR +E G++ + ++RD + +GFG+V F +
Sbjct: 11 LFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAAR 70
Query: 190 -----------------------------------------EEEELRKAFESCGEIDNVR 208
EE LR FE G+ID +
Sbjct: 71 PHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIE 130
Query: 209 LIRDQHTNIGKGFGYVNF 226
+I D+ + +GFG+V F
Sbjct: 131 IITDRQSGKKRGFGFVTF 148
>gi|453089427|gb|EMF17467.1| RNA-binding domain-containing protein [Mycosphaerella populorum
SO2202]
Length = 501
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 56/116 (48%), Gaps = 22/116 (18%)
Query: 99 AYVRFKNLESVEKALEM-NGHVIDEHTIRVDKALTTTKSNSH------------------ 139
YV F N E KALE N ++D IRVD + KSN+
Sbjct: 284 GYVEFTNAEDAAKALEAKNESLLDNRNIRVDFSTPRDKSNAGPQQRSNDRQQKFGDAPGE 343
Query: 140 ---SIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEE 192
+I+ GN+ F+A E+ +R+ F G ++++RL D+ T KGFGYV + EE
Sbjct: 344 PTATIWCGNLSFDATEDVVREYFAEHGNVNSIRLPTDRDTGAPKGFGYVEMGSVEE 399
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 49/83 (59%), Gaps = 7/83 (8%)
Query: 134 TKSNSHSI---FIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAE 190
T+SN ++ FIGN+ + +EE L + FE GE+ VR+I D+ + KGFGYV F
Sbjct: 232 TESNPDAVANLFIGNLSWNVDEEWLTREFEEFGELAGVRIITDRDSGRSKGFGYVEF-TN 290
Query: 191 EEELRKAFESCGE--IDNVRLIR 211
E+ KA E+ E +DN R IR
Sbjct: 291 AEDAAKALEAKNESLLDN-RNIR 312
Score = 42.0 bits (97), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 28/44 (63%)
Query: 183 GYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 226
G +++ +EE L + FE GE+ VR+I D+ + KGFGYV F
Sbjct: 245 GNLSWNVDEEWLTREFEEFGELAGVRIITDRDSGRSKGFGYVEF 288
>gi|346465875|gb|AEO32782.1| hypothetical protein [Amblyomma maculatum]
Length = 558
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 63/125 (50%), Gaps = 19/125 (15%)
Query: 93 KRTNMNAYVRFKNLESVEKALEMNGH-------VIDEHTIRVDKALTTTKSNSHS----- 140
+R+ AYV F ++ESV A+ +NG V+ ++A S S S
Sbjct: 235 RRSKGIAYVEFLDVESVPLAMGLNGQKLFGIPIVVQPTQAERNRAAAQNASTSSSTLQRG 294
Query: 141 ------IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEEL 194
+++G++ F E+ L+ FE G+ID + LI+D TN KG+G++ F + E+
Sbjct: 295 NVGPMRLYVGSLHFNITEDMLKGIFEPFGKIDKIELIKDMETNRSKGYGFITFH-DSEDA 353
Query: 195 RKAFE 199
+KA E
Sbjct: 354 KKALE 358
>gi|242021493|ref|XP_002431179.1| nucleolysin TIA-1, putative [Pediculus humanus corporis]
gi|212516428|gb|EEB18441.1| nucleolysin TIA-1, putative [Pediculus humanus corporis]
Length = 403
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 40/112 (35%), Positives = 59/112 (52%), Gaps = 9/112 (8%)
Query: 90 VHEKRTNMNAYVRFKNLESVEKAL-EMNGHVIDEHTIRVDKALTTTK------SNSHSIF 142
+ E + A+V F N ++ AL MN + E I+V+ A + S+ H IF
Sbjct: 42 IREPNNDPYAFVEFVNHQAASTALIAMNKRHVLEKEIKVNWATSPGNQPKQDTSSHHHIF 101
Query: 143 IGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF--KAEEE 192
+G++ E E LR+AF GEI N R++RD T KG+ +V+F KAE E
Sbjct: 102 VGDLSPEIEMHTLREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAE 153
>gi|146260280|ref|NP_001041526.1| heterogeneous nuclear ribonucleoprotein A/B isoform 1 [Mus
musculus]
gi|89275690|gb|ABD66224.1| S1 protein C2 [Mus musculus]
gi|148701714|gb|EDL33661.1| heterogeneous nuclear ribonucleoprotein A/B, isoform CRA_a [Mus
musculus]
Length = 332
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 62/115 (53%), Gaps = 2/115 (1%)
Query: 85 IKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKSNSHSIFIG 144
IKM+ + R+ ++ FK+ SVEK L+ H +D I KA+ K IF+G
Sbjct: 106 IKMDP-NTGRSRGFGFILFKDSSSVEKVLDQKEHRLDGRVIDPKKAMAMKKDPVKKIFVG 164
Query: 145 NIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
+ EA EE++R+ F GEI+ + L D N +GF ++ FK EE+ ++K E
Sbjct: 165 GLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFK-EEDPVKKVLE 218
>gi|74225210|dbj|BAE38291.1| unnamed protein product [Mus musculus]
Length = 325
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 62/115 (53%), Gaps = 2/115 (1%)
Query: 85 IKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKSNSHSIFIG 144
IKM+ + R+ ++ FK+ SVEK L+ H +D I KA+ K IF+G
Sbjct: 99 IKMDP-NTGRSRGFGFILFKDSSSVEKVLDQKEHRLDGRVIDPKKAMAMKKDPVKKIFVG 157
Query: 145 NIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
+ EA EE++R+ F GEI+ + L D N +GF ++ FK EE+ ++K E
Sbjct: 158 GLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFK-EEDPVKKVLE 211
>gi|346321757|gb|EGX91356.1| nucleolin protein Nsr1, putative [Cordyceps militaris CM01]
Length = 438
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 66/144 (45%), Gaps = 27/144 (18%)
Query: 94 RTNMNAYVRFKNLESVEKALE-MNGHVIDEHTIRVDKA--------------------LT 132
R+ YV F + ES KA E M G +D + +D A
Sbjct: 220 RSRGFGYVDFADSESATKAYEAMQGQEVDGRALNLDYANAKPAESKPQDRAADRASRHGD 279
Query: 133 TTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEE 192
T + S ++F+GN+PF+ E++ +R+ F E+ ++RL D + KGFGYV F + +
Sbjct: 280 TLSAESETLFVGNLPFDTEQDAVREFFGEVAEVASIRLPTDPESGNLKGFGYVTFNS-ID 338
Query: 193 ELRKAFE-----SCGEIDNVRLIR 211
+ + A E S G N R +R
Sbjct: 339 DAKTALEAKNGASIGNGRNARAVR 362
Score = 45.4 bits (106), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 47/76 (61%), Gaps = 3/76 (3%)
Query: 127 VDKALTTTKSNS--HSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGY 184
VD+A KS+ ++F G++ + ++ L +AF+S + + R++ D++T +GFGY
Sbjct: 167 VDEASKKAKSDDAPSTLFAGSLSWGVDDNALYEAFKSFSGLVHARVVTDKNTGRSRGFGY 226
Query: 185 VNFKAEEEELRKAFES 200
V+F A+ E KA+E+
Sbjct: 227 VDF-ADSESATKAYEA 241
>gi|325183203|emb|CCA17661.1| nucleolin putative [Albugo laibachii Nc14]
Length = 701
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 55/109 (50%), Gaps = 2/109 (1%)
Query: 85 IKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKA--LTTTKSNSHSIF 142
I M + R + A +RF E ALE++G +++ A + N + F
Sbjct: 465 IDMQTQGDGRPSGKARIRFSCASEAEAALELDGSDFGGRWLKIQLANEILEKPENCTTAF 524
Query: 143 IGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEE 191
+GN+P++A++ + + F CGEI RL+ D+ T +G GYV F + E
Sbjct: 525 VGNLPWDADDNSVCEFFSQCGEIGECRLLSDRETGEFRGIGYVEFTSTE 573
Score = 45.1 bits (105), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 53/132 (40%), Gaps = 46/132 (34%)
Query: 141 IFIGNIPFEAEEEELRKAFESCGEIDNVRL------------------------------ 170
I+I +P+EA E ++R+ FESCG ++++ +
Sbjct: 438 IYILGLPWEATEAQVRERFESCGTVEHIDMQTQGDGRPSGKARIRFSCASEAEAALELDG 497
Query: 171 ---------------IRDQHTNIGKGF-GYVNFKAEEEELRKAFESCGEIDNVRLIRDQH 214
I ++ N F G + + A++ + + F CGEI RL+ D+
Sbjct: 498 SDFGGRWLKIQLANEILEKPENCTTAFVGNLPWDADDNSVCEFFSQCGEIGECRLLSDRE 557
Query: 215 TNIGKGFGYVNF 226
T +G GYV F
Sbjct: 558 TGEFRGIGYVEF 569
>gi|293334069|ref|NP_001168848.1| uncharacterized protein LOC100382653 [Zea mays]
gi|392351175|ref|XP_003750865.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A/B-like isoform
2 [Rattus norvegicus]
gi|6562845|emb|CAB62553.1| heterogeneous nuclear ribonucleoprotein [Rattus norvegicus]
gi|149052496|gb|EDM04313.1| rCG34663, isoform CRA_a [Rattus norvegicus]
gi|223973327|gb|ACN30851.1| unknown [Zea mays]
Length = 332
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 62/115 (53%), Gaps = 2/115 (1%)
Query: 85 IKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKSNSHSIFIG 144
IKM+ + R+ ++ FK+ SVEK L+ H +D I KA+ K IF+G
Sbjct: 106 IKMDP-NTGRSRGFGFILFKDSSSVEKVLDQKEHRLDGRVIDPKKAMAMKKDPVKKIFVG 164
Query: 145 NIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
+ EA EE++R+ F GEI+ + L D N +GF ++ FK EE+ ++K E
Sbjct: 165 GLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFK-EEDPVKKVLE 218
>gi|334310867|ref|XP_001381121.2| PREDICTED: heterogeneous nuclear ribonucleoprotein A/B-like
[Monodelphis domestica]
Length = 376
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 63/115 (54%), Gaps = 2/115 (1%)
Query: 85 IKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKSNSHSIFIG 144
IKM+ + R+ ++ FK SV+K L+ H +D I KA+ K IF+G
Sbjct: 128 IKMD-PNTGRSRGFGFILFKESASVDKVLDQKEHRLDGRVIDPKKAMAMKKDPVKKIFVG 186
Query: 145 NIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
+ EA E+++R+ F GEI+++ L D TN +GF ++ FK EE+ ++K E
Sbjct: 187 GLNPEATEDKIREYFGDFGEIESIELPMDPKTNKRRGFVFITFK-EEDPVKKILE 240
>gi|392339470|ref|XP_003753820.1| PREDICTED: heterogeneous nuclear ribonucleoproteins A2/B1-like
[Rattus norvegicus]
Length = 341
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 55/111 (49%), Gaps = 7/111 (6%)
Query: 84 CIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALT---TTKSNSH- 139
C+ M KR+ +V F ++ V+ A+ H ID + +A+ + K +H
Sbjct: 38 CVVMRDPASKRSRGFGFVTFSSMAEVDVAMAARPHSIDGRVVEPKRAVAREESGKPGAHV 97
Query: 140 ---SIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 187
+F+G I + EE LR FE G+ID + +I D+ + +GFG+V F
Sbjct: 98 TVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGXKRGFGFVTF 148
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 53/138 (38%), Gaps = 52/138 (37%)
Query: 141 IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKA----------- 189
+FIG + FE EE LR +E G++ + ++RD + +GFG+V F +
Sbjct: 11 LFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDVAMAAR 70
Query: 190 -----------------------------------------EEEELRKAFESCGEIDNVR 208
EE LR FE G+ID +
Sbjct: 71 PHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIE 130
Query: 209 LIRDQHTNIGKGFGYVNF 226
+I D+ + +GFG+V F
Sbjct: 131 IITDRQSGXKRGFGFVTF 148
>gi|261331756|emb|CBH14750.1| DRBD9 [Trypanosoma brucei gambiense DAL972]
Length = 429
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 80/156 (51%), Gaps = 26/156 (16%)
Query: 57 MFKPYGEVETVRFRSVPV--------ADITLPRKACIKMNKV------HEKRTNMNAYVR 102
+FK G +E+VR R+ + + T+ K + +V ++ + AYV
Sbjct: 151 VFKTCGPIESVRIRAQALEGEKDLNGGEATVQPKGVGRAIRVLRGDVKKGEQYSAVAYVL 210
Query: 103 FKNLESVEKALEMNGHVIDEHTIRVDKALTTTKSNSH------SIFIGNIPFEAEEEELR 156
FK+ S+++AL+ NG V++ I +TT S+F+GN+ +++ EE L
Sbjct: 211 FKDKSSIKEALDKNGVVVEGRHI----VVTTLDPEGREYAPETSVFVGNVAYDSNEEALW 266
Query: 157 KAFESCG--EIDNVRLIRDQHTNIGKGFGYVNFKAE 190
F G ++ VRL+RD+ + + KGFGYV F+++
Sbjct: 267 NFFVEKGIRDVKRVRLVRDRESGMCKGFGYVEFQSK 302
>gi|452822947|gb|EME29962.1| heterogeneous nuclear ribonucleoprotein A1/A3 [Galdieria
sulphuraria]
Length = 368
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 64/159 (40%), Gaps = 52/159 (32%)
Query: 120 IDEHTIRVDKALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIG 179
I+ + +R + + ++N+ IF+G + +E EE L+K FES G + + ++RD+HT
Sbjct: 31 IESNAVRAEHSDPGNQNNNSKIFVGGLSWETTEETLQKYFESYGRVLDCVIMRDKHTGHP 90
Query: 180 KGFGYVNFKAEEEELRKA------------------------------------------ 197
+GFG+V F+ EE R A
Sbjct: 91 RGFGFVTFEKEESADRAATKRHELDGRQVEAKKAVPKAEYITRSQVTKPTRKIFVGGLPL 150
Query: 198 ----------FESCGEIDNVRLIRDQHTNIGKGFGYVNF 226
FE G + ++ D T I +GFG+V F
Sbjct: 151 SCTEEDFMEYFERLGHVVEAHIMYDHQTGISRGFGFVTF 189
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 75/171 (43%), Gaps = 21/171 (12%)
Query: 84 CIKMNKVHEKRTNMNAYVRFKNLESVEKAL----EMNGHVIDEHTIRVDKALTTTKSN-- 137
C+ M H +V F+ ES ++A E++G + E V KA T+S
Sbjct: 79 CVIMRDKHTGHPRGFGFVTFEKEESADRAATKRHELDGRQV-EAKKAVPKAEYITRSQVT 137
Query: 138 --SHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELR 195
+ IF+G +P EE+ + FE G + ++ D T I +GFG+V F + E+ +
Sbjct: 138 KPTRKIFVGGLPLSCTEEDFMEYFERLGHVVEAHIMYDHQTGISRGFGFVTFSS-EDMVE 196
Query: 196 KAFESC-----GEIDNVRLIRDQHTNIGK------GFGYVNFKVSFTTLSS 235
K FE G+I V+ +H + G+ G Y + F SS
Sbjct: 197 KVFEQSQHEIKGKIVEVKKAEPKHFSEGRRMKDLGGNSYERYPEKFPYFSS 247
Score = 42.0 bits (97), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 38/64 (59%), Gaps = 7/64 (10%)
Query: 171 IRDQHTNIGKG-------FGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGY 223
+R +H++ G G ++++ EE L+K FES G + + ++RD+HT +GFG+
Sbjct: 36 VRAEHSDPGNQNNNSKIFVGGLSWETTEETLQKYFESYGRVLDCVIMRDKHTGHPRGFGF 95
Query: 224 VNFK 227
V F+
Sbjct: 96 VTFE 99
>gi|156064711|ref|XP_001598277.1| hypothetical protein SS1G_00363 [Sclerotinia sclerotiorum 1980]
gi|154691225|gb|EDN90963.1| hypothetical protein SS1G_00363 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 784
Score = 60.5 bits (145), Expect = 5e-07, Method: Composition-based stats.
Identities = 33/103 (32%), Positives = 57/103 (55%), Gaps = 10/103 (9%)
Query: 99 AYVRFKNLESVEKALE-MNGHVIDE-------HTIRVDK--ALTTTKSNSHSIFIGNIPF 148
+V ++ E+ +A++ +NG +++E H + D+ K+N +I++ NIP
Sbjct: 192 GFVHYETDEAAAQAIKHVNGMLLNEKKVFVGHHIPKKDRQSKFEEMKANFTNIYVKNIPV 251
Query: 149 EAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEE 191
EA EEE R+ FE G++ + L RD + +GFG+VNF E
Sbjct: 252 EATEEEFRELFEKFGDVTSASLARDTESGKSRGFGFVNFINHE 294
Score = 47.0 bits (110), Expect = 0.007, Method: Composition-based stats.
Identities = 47/195 (24%), Positives = 76/195 (38%), Gaps = 64/195 (32%)
Query: 93 KRTNMNAYVRFKNLESVEKALE-MNGHVIDEHTIRV-----DKALTTTKSNSHSIFIGNI 146
+R+ AYV + EKALE +N +I R+ D AL K+ ++FI N+
Sbjct: 99 RRSLGYAYVNYNTTVDGEKALEELNYTLIKGRPCRIMWSQRDPALR--KNGQGNVFIKNL 156
Query: 147 PFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYV--------------------- 185
+ + L F + G I + ++ +D+ + KG+G+V
Sbjct: 157 DVAIDNKALHDTFAAFGNILSCKVAQDE-SGASKGYGFVHYETDEAAAQAIKHVNGMLLN 215
Query: 186 ------------------------NF----------KAEEEELRKAFESCGEIDNVRLIR 211
NF +A EEE R+ FE G++ + L R
Sbjct: 216 EKKVFVGHHIPKKDRQSKFEEMKANFTNIYVKNIPVEATEEEFRELFEKFGDVTSASLAR 275
Query: 212 DQHTNIGKGFGYVNF 226
D + +GFG+VNF
Sbjct: 276 DTESGKSRGFGFVNF 290
>gi|291407017|ref|XP_002719829.1| PREDICTED: RBD (RNA binding domain) protein family member
(rbd-1)-like [Oryctolagus cuniculus]
Length = 1025
Score = 60.5 bits (145), Expect = 5e-07, Method: Composition-based stats.
Identities = 39/131 (29%), Positives = 69/131 (52%), Gaps = 17/131 (12%)
Query: 86 KMNKVHEKRTNMNAYVRFKNLESVEKAL-EMNGHVIDEHTIRVD-------KALTTT--- 134
K +K E + +V ++ E ++AL ++ GHV+D H + V ALT+
Sbjct: 738 KKSKTGELLSMGFGFVEYRKPEQADRALKQLQGHVVDGHKLEVRISERATRPALTSARKK 797
Query: 135 ----KSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQH-TNIGKGFGYVNFKA 189
K + I + NIPF+A+ E+R+ F + GE+ VRL + T +GFG+V+F
Sbjct: 798 QVPRKQTTSKILVRNIPFQADSREIRELFSTFGELKTVRLPKKMTGTGTHRGFGFVDFLT 857
Query: 190 EEEELRKAFES 200
+++ ++AF +
Sbjct: 858 KQDA-KRAFNA 867
Score = 41.6 bits (96), Expect = 0.28, Method: Composition-based stats.
Identities = 35/146 (23%), Positives = 60/146 (41%), Gaps = 26/146 (17%)
Query: 100 YVRFKNLESVEKALEMNGHVIDEHTIRV--DKALTTTK---------------------- 135
+V F + E V+KAL+ N + I V +K + TK
Sbjct: 311 FVDFSSEEEVKKALKCNREYMGGRYIEVFREKPVPATKGPQKSSTRPWQGRTLGENEEEE 370
Query: 136 --SNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEE 193
++S +F+ N+P+ + EE+L K F G + + D T KGF +V F E
Sbjct: 371 DLADSGRLFVRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFVTFMMPEHA 430
Query: 194 LRKAFESCGEIDNVRLIRDQHTNIGK 219
++ G++ R++ + I K
Sbjct: 431 VKAYAGVDGQVFQGRMLHVLPSTIKK 456
>gi|291231285|ref|XP_002735593.1| PREDICTED: TIA-1 related protein-like [Saccoglossus kowalevskii]
Length = 409
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 61/114 (53%), Gaps = 8/114 (7%)
Query: 80 PRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALE-MNGHVIDEHTIRVDKALTTTK--- 135
P K+C KM H + +V F AL+ MNG +I ++V+ A T +
Sbjct: 39 PCKSC-KMIAEHGGN-DPYCFVEFVEHSHAAAALQTMNGRMILGKEVKVNWATTPSSMKK 96
Query: 136 --SNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 187
SN H +F+G++ E + +L+ AF G+I + R+++D TN KG+G+V+F
Sbjct: 97 DTSNHHHVFVGDLSSEVDTPDLKAAFAPFGQISDARVVKDLQTNKSKGYGFVSF 150
>gi|71024221|ref|XP_762340.1| hypothetical protein UM06193.1 [Ustilago maydis 521]
gi|46101864|gb|EAK87097.1| hypothetical protein UM06193.1 [Ustilago maydis 521]
Length = 475
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 48/94 (51%), Gaps = 18/94 (19%)
Query: 114 EMNGHVIDEHTIRVDKALTTTKSN----------------SHSIFIGNIPFEAEEEELRK 157
E G +D IR+D L+T K + S ++FIGN+ F+ E+++
Sbjct: 273 EGQGKEVDGRAIRID--LSTPKGDVTENRAKKFNDQRSAPSSTLFIGNLSFDVSEDDVWN 330
Query: 158 AFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEE 191
AF GE+ VRL +D + KGFGYV F A+E
Sbjct: 331 AFSEHGEVSGVRLPKDPDSGRPKGFGYVEFAAQE 364
Score = 43.1 bits (100), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 30/54 (55%)
Query: 183 GYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKVSFTTLSSI 236
G ++F E+++ AF GE+ VRL +D + KGFGYV F + ++I
Sbjct: 317 GNLSFDVSEDDVWNAFSEHGEVSGVRLPKDPDSGRPKGFGYVEFAAQESAQAAI 370
Score = 36.6 bits (83), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 38/74 (51%)
Query: 138 SHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKA 197
++ I++G + + + + L+ E GE+ + R+ D+ + +GFGYV+F +
Sbjct: 212 TNQIWVGQLSWNVDNDWLKSEMEVFGEVTSARVQLDRTSGKSRGFGYVDFATAAAAKKAF 271
Query: 198 FESCGEIDNVRLIR 211
E G+ + R IR
Sbjct: 272 DEGQGKEVDGRAIR 285
>gi|358054177|dbj|GAA99713.1| hypothetical protein E5Q_06416 [Mixia osmundae IAM 14324]
Length = 565
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 86/210 (40%), Gaps = 73/210 (34%)
Query: 49 HALSSVTSMFKPYGEVETVRFRSVPVA-DITLP--------------------------- 80
H S++ + E++R+RS+P+A +T P
Sbjct: 192 HLFSTLPEQVQAVARCESIRYRSLPLAAPVTQPKSSQSHAKARAEQWKQHANGASQEPAQ 251
Query: 81 --------RKACIKMNKVHEKRTNMNAYVRFK------NLESVEK-----ALEMNGHVID 121
RK +++H N NAY + +LE+ A N V +
Sbjct: 252 EYLTPAQQRKVAFIKHELHPSGQNCNAYAVLQLTSPAADLETSADLATLLATSANATVFE 311
Query: 122 EHTIRVD-------KALTTTKSNSHSI-------FIGNIPFEAEEEELRKAFES------ 161
E T+RVD A + K++SHS ++GN+ F +EE +RK FE
Sbjct: 312 ERTLRVDLVKSASDAASSPGKTDSHSADHLRRTCYVGNLDFAQDEEGIRKVFEDLLRAER 371
Query: 162 ----CGE--IDNVRLIRDQHTNIGKGFGYV 185
G+ +++VR++RD+ T +GKGF YV
Sbjct: 372 GAPPAGKPYVESVRVVRDRDTGLGKGFAYV 401
>gi|395816803|ref|XP_003781879.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D-like [Otolemur
garnettii]
Length = 532
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 61/118 (51%), Gaps = 2/118 (1%)
Query: 84 CIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALT-TTKSNSHSIF 142
CI R+ +V FK+ SV+K LE+ H +D I +A K +F
Sbjct: 139 CIIKTDPVSGRSRGFGFVLFKDAASVDKVLELKEHKLDGKLIDPQRAKPLKEKEPPKKVF 198
Query: 143 IGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFES 200
+G + + +E+++ F + GEI+N+ L RD+ TN +GF +V + E E ++K ES
Sbjct: 199 VGGLSPDTSKEQIKDYFGAFGEIENIELPRDRKTNERRGFCFVTY-TEGEPVKKLLES 255
>gi|383864354|ref|XP_003707644.1| PREDICTED: RNA-binding protein 39-like isoform 2 [Megachile
rotundata]
Length = 507
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 61/115 (53%), Gaps = 15/115 (13%)
Query: 99 AYVRFKNLESVEKALEMNGH------VIDEHTI--------RVDKALTTTKSNSHSIFIG 144
AYV FK+ ESV AL ++G ++ +HT + + ++ +++G
Sbjct: 192 AYVEFKDPESVTLALGLSGQKLLGVPIVVQHTQAEKNRMGNSMPNLMPKGQTGPMRLYVG 251
Query: 145 NIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
++ F E+ LR FE G+IDN++LI D T KG+G++ F+ ++ +KA E
Sbjct: 252 SLHFNITEDMLRGIFEPFGKIDNIQLIMDPETGRSKGYGFLTFR-NADDAKKALE 305
>gi|307195359|gb|EFN77277.1| RNA-binding protein 39 [Harpegnathos saltator]
Length = 370
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 61/115 (53%), Gaps = 15/115 (13%)
Query: 99 AYVRFKNLESVEKALEMNGH------VIDEHTI--------RVDKALTTTKSNSHSIFIG 144
AYV FK+ ESV AL ++G ++ +HT + + ++ +++G
Sbjct: 55 AYVEFKDPESVTLALGLSGQKLLGVPIVVQHTQAEKNRMGNSMPNLMPKGQTGPMRLYVG 114
Query: 145 NIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
++ F E+ LR FE G+IDN++LI D T KG+G++ F+ ++ +KA E
Sbjct: 115 SLHFNITEDMLRGIFEPFGKIDNIQLIMDPETGRSKGYGFLTFR-NADDAKKALE 168
>gi|296815788|ref|XP_002848231.1| nuclear and cytoplasmic polyadenylated RNA-binding protein pub1
[Arthroderma otae CBS 113480]
gi|238841256|gb|EEQ30918.1| nuclear and cytoplasmic polyadenylated RNA-binding protein pub1
[Arthroderma otae CBS 113480]
Length = 507
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 65/121 (53%), Gaps = 9/121 (7%)
Query: 99 AYVRFKNLESVEKALE-MNGHVIDEHTIRVDKAL---TTTK---SNSHSIFIGNIPFEAE 151
++ + + + E+A++ +NG + + IRV+ A T +K SN IF+G++ E
Sbjct: 147 GFIEYDDPGAAERAMQTLNGRRVHQSEIRVNWAYQSNTASKEDTSNHFHIFVGDLSNEVN 206
Query: 152 EEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESC-GEIDNVRLI 210
+E L +AF +CG + R++ D T +G+G+V F+ + + KA S GE R I
Sbjct: 207 DEVLLQAFSACGSVSEARVMWDMKTGRSRGYGFVAFR-DRADAEKALSSMDGEWLGSRAI 265
Query: 211 R 211
R
Sbjct: 266 R 266
>gi|198476543|ref|XP_001357388.2| GA10876 [Drosophila pseudoobscura pseudoobscura]
gi|198137744|gb|EAL34457.2| GA10876 [Drosophila pseudoobscura pseudoobscura]
Length = 625
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 63/115 (54%), Gaps = 15/115 (13%)
Query: 99 AYVRFKNLESVEKALEMNGH------VIDEHTI----RVDKALTTTKSNSH----SIFIG 144
AY+ F++ ESV AL ++G ++ +HT R+ A + SH +++G
Sbjct: 311 AYIEFEDPESVALALGLSGQRLLGVPIMVQHTQAEKNRLQNATPAFQPKSHVGPMRLYVG 370
Query: 145 NIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
++ F+ EE LR FE G+ID ++LI D TN KG+G++ + E+ +KA E
Sbjct: 371 SLHFDITEEMLRGIFEPFGKIDAIQLIMDTETNRSKGYGFITYH-NAEDAKKALE 424
>gi|50305507|ref|XP_452713.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49641846|emb|CAH01564.1| KLLA0C11495p [Kluyveromyces lactis]
Length = 445
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 79/166 (47%), Gaps = 26/166 (15%)
Query: 80 PRKACIKMNKVHEKRTNMN---AYVRFKNLESVEKAL-EMNGHVIDEHTIRVDKALTTTK 135
P I ++E+ T+ + YV F++ EKA+ EM+G ID I D ++T+K
Sbjct: 218 PIGGVISARVMYERGTDRSRGYGYVDFEDKSYAEKAIKEMHGKEIDGRPINCD--MSTSK 275
Query: 136 S------------------NSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTN 177
S ++F+GN+ FEA+ + L + F GEI +VR+ T
Sbjct: 276 PAGAPRDDRAKKFGDVPSEPSDTLFLGNLSFEADRDNLYEIFGKYGEIVSVRIPTHPETE 335
Query: 178 IGKGFGYVNFKAEEEELRKAFESC-GEIDNVRLIRDQHTNIGKGFG 222
KGFGYV + E+ KAFE GE N R +R ++ + FG
Sbjct: 336 QPKGFGYVQY-GSIEDATKAFEGLQGEYINNRPVRLDYSIPKQNFG 380
Score = 41.2 bits (95), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 37/68 (54%)
Query: 121 DEHTIRVDKALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGK 180
DE K T +IF+G + + ++E L+ FE G + + R++ ++ T+ +
Sbjct: 178 DEEKSESKKPKTELAGEPATIFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGTDRSR 237
Query: 181 GFGYVNFK 188
G+GYV+F+
Sbjct: 238 GYGYVDFE 245
>gi|375012528|ref|YP_004989516.1| RRM domain-containing RNA-binding protein [Owenweeksia
hongkongensis DSM 17368]
gi|359348452|gb|AEV32871.1| RRM domain-containing RNA-binding protein [Owenweeksia
hongkongensis DSM 17368]
Length = 111
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 43/59 (72%), Gaps = 1/59 (1%)
Query: 141 IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
IF+G++P+ EEE+LR AFE+ GE+D+VR+I D+ T KGFG+V +++ +KA +
Sbjct: 3 IFVGSLPWATEEEDLRGAFEAYGEVDSVRIITDKFTGRSKGFGFVEM-PDDDAAQKAID 60
Score = 50.1 bits (118), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 22/42 (52%), Positives = 31/42 (73%)
Query: 183 GYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYV 224
G + + EEE+LR AFE+ GE+D+VR+I D+ T KGFG+V
Sbjct: 6 GSLPWATEEEDLRGAFEAYGEVDSVRIITDKFTGRSKGFGFV 47
>gi|328715702|ref|XP_003245699.1| PREDICTED: nucleolysin TIA-1 isoform p40-like isoform 2
[Acyrthosiphon pisum]
gi|328715706|ref|XP_003245700.1| PREDICTED: nucleolysin TIA-1 isoform p40-like isoform 3
[Acyrthosiphon pisum]
Length = 420
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 47/83 (56%), Gaps = 4/83 (4%)
Query: 131 LTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF--K 188
+T KS H IF+G++ E E + LR+AF GEI + R++RD T KG+G+V+F K
Sbjct: 54 MTINKSEHHHIFVGDLSPEIETQTLREAFAPFGEISDCRVVRDPQTLKSKGYGFVSFLKK 113
Query: 189 AEEEELRKAFESCGEIDNVRLIR 211
AE E A G+ R IR
Sbjct: 114 AEAESAIAAMN--GQWLGSRSIR 134
Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 25/37 (67%)
Query: 190 EEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 226
E + LR+AF GEI + R++RD T KG+G+V+F
Sbjct: 74 ETQTLREAFAPFGEISDCRVVRDPQTLKSKGYGFVSF 110
>gi|383864352|ref|XP_003707643.1| PREDICTED: RNA-binding protein 39-like isoform 1 [Megachile
rotundata]
Length = 530
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 61/115 (53%), Gaps = 15/115 (13%)
Query: 99 AYVRFKNLESVEKALEMNGH------VIDEHTI--------RVDKALTTTKSNSHSIFIG 144
AYV FK+ ESV AL ++G ++ +HT + + ++ +++G
Sbjct: 215 AYVEFKDPESVTLALGLSGQKLLGVPIVVQHTQAEKNRMGNSMPNLMPKGQTGPMRLYVG 274
Query: 145 NIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
++ F E+ LR FE G+IDN++LI D T KG+G++ F+ ++ +KA E
Sbjct: 275 SLHFNITEDMLRGIFEPFGKIDNIQLIMDPETGRSKGYGFLTFR-NADDAKKALE 328
>gi|417410446|gb|JAA51696.1| Putative rna-binding protein musashi/mrna cleavage and
polyadenylation factor i complex subunit hrp1, partial
[Desmodus rotundus]
Length = 404
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 49/200 (24%), Positives = 86/200 (43%), Gaps = 30/200 (15%)
Query: 13 IPTQNRNLMSKLKVFLNIWKMALKLKMNPSLTKSKNHAL-----------SSVTSMFKPY 61
+P N M + + NI + A K+N S + + + +T +
Sbjct: 96 LPADNSATMEDVNEYSNIEEFAEGSKINASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRF 155
Query: 62 GEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVID 121
GEV ++ PV R+ +V FK+ SV+K LE+ H +D
Sbjct: 156 GEVVDCTIKTDPVTG-----------------RSRGFGFVLFKDAASVDKVLELKEHKLD 198
Query: 122 EHTIRVDKALT-TTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGK 180
I +A K +F+G + + EE++++ F + GEI+N+ L D TN +
Sbjct: 199 GKLIDPKRAKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERR 258
Query: 181 GFGYVNFKAEEEELRKAFES 200
GF ++ + +EE ++K ES
Sbjct: 259 GFCFITY-TDEEPVKKLLES 277
>gi|296472242|tpg|DAA14357.1| TPA: RNA binding motif protein 34 [Bos taurus]
Length = 273
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 42/64 (65%)
Query: 54 VTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKAL 113
+ S FK YG++E+VRFRS+ A+ TL +K K+H + N+NAYV FK+ + KAL
Sbjct: 201 LKSFFKEYGQIESVRFRSLIPAEGTLSKKLAAIKRKIHPDQKNINAYVVFKDESAATKAL 260
Query: 114 EMNG 117
E NG
Sbjct: 261 ERNG 264
>gi|71745848|ref|XP_827554.1| hypothetical protein [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|70831719|gb|EAN77224.1| RNA-binding protein, putative [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
Length = 429
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 58/100 (58%), Gaps = 12/100 (12%)
Query: 99 AYVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKSNSH------SIFIGNIPFEAEE 152
AYV FK+ S+++AL+ NG V++ I +TT S+F+GN+ +++ E
Sbjct: 207 AYVLFKDKSSIKEALDKNGVVVEGRHI----VVTTLDPEGREYAPETSVFVGNVAYDSNE 262
Query: 153 EELRKAFESCG--EIDNVRLIRDQHTNIGKGFGYVNFKAE 190
E L F G ++ VRL+RD+ + + KGFGYV F+++
Sbjct: 263 EALWNFFVEKGIRDVKRVRLVRDRESGMCKGFGYVEFQSK 302
>gi|189237575|ref|XP_974855.2| PREDICTED: similar to splicing factor [Tribolium castaneum]
Length = 501
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 60/115 (52%), Gaps = 15/115 (13%)
Query: 99 AYVRFKNLESVEKALEMNGH------VIDEHTIRVDKALTTTKSN--------SHSIFIG 144
AY+ FK+ ESV AL ++G +I +HT + + N +++G
Sbjct: 187 AYIEFKDPESVTLALGLSGQKLLGVPIIVQHTQAEKNRMGNSMPNLMPKNMTGPMRLYVG 246
Query: 145 NIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
++ F E+ LR FE G+IDN++LI D T KG+G++ F+ E+ +KA E
Sbjct: 247 SLHFNITEDMLRSIFEPFGKIDNIQLIMDPETGRSKGYGFIAFR-NCEDAKKALE 300
Score = 45.4 bits (106), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 29/45 (64%)
Query: 183 GYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK 227
G ++F E+ LR FE G+IDN++LI D T KG+G++ F+
Sbjct: 246 GSLHFNITEDMLRSIFEPFGKIDNIQLIMDPETGRSKGYGFIAFR 290
>gi|350410161|ref|XP_003488967.1| PREDICTED: RNA-binding protein 39-like isoform 2 [Bombus impatiens]
Length = 508
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 61/115 (53%), Gaps = 15/115 (13%)
Query: 99 AYVRFKNLESVEKALEMNGH------VIDEHTI--------RVDKALTTTKSNSHSIFIG 144
AYV FK+ ESV AL ++G ++ +HT + + ++ +++G
Sbjct: 193 AYVEFKDPESVTLALGLSGQKLLGVPIVVQHTQAEKNRMGNSMPNLMPKGQTGPMRLYVG 252
Query: 145 NIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
++ F E+ LR FE G+IDN++LI D T KG+G++ F+ ++ +KA E
Sbjct: 253 SLHFNITEDMLRGIFEPFGKIDNIQLIMDPETGRSKGYGFLTFR-NADDAKKALE 306
>gi|340718900|ref|XP_003397900.1| PREDICTED: RNA-binding protein 39-like isoform 2 [Bombus
terrestris]
Length = 508
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 61/115 (53%), Gaps = 15/115 (13%)
Query: 99 AYVRFKNLESVEKALEMNGH------VIDEHTI--------RVDKALTTTKSNSHSIFIG 144
AYV FK+ ESV AL ++G ++ +HT + + ++ +++G
Sbjct: 193 AYVEFKDPESVTLALGLSGQKLLGVPIVVQHTQAEKNRMGNSMPNLMPKGQTGPMRLYVG 252
Query: 145 NIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
++ F E+ LR FE G+IDN++LI D T KG+G++ F+ ++ +KA E
Sbjct: 253 SLHFNITEDMLRGIFEPFGKIDNIQLIMDPETGRSKGYGFLTFR-NADDAKKALE 306
>gi|291401535|ref|XP_002717031.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D [Oryctolagus
cuniculus]
Length = 448
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 60/111 (54%), Gaps = 10/111 (9%)
Query: 94 RTNMNAYVRFKNLESVEKALE-----MNGHVIDEHTIRVDKALTTTKSNSHSIFIGNIPF 148
R+ +V FK ESV+K ++ +NG VID + K TK IF+G +
Sbjct: 229 RSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMK----TKEPVKKIFVGGLSP 284
Query: 149 EAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
+ EE++R+ F GE++++ L D TN +GF ++ FK EEE ++K E
Sbjct: 285 DTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFK-EEEPVKKIME 334
Score = 40.8 bits (94), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 30/133 (22%), Positives = 52/133 (39%), Gaps = 46/133 (34%)
Query: 141 IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK------------ 188
+FIG + ++ +++L+ F GE+ + L D T +GFG+V FK
Sbjct: 192 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 251
Query: 189 ----------------------------------AEEEELRKAFESCGEIDNVRLIRDQH 214
EE++R+ F GE++++ L D
Sbjct: 252 EHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNK 311
Query: 215 TNIGKGFGYVNFK 227
TN +GF ++ FK
Sbjct: 312 TNKRRGFCFITFK 324
>gi|350410158|ref|XP_003488966.1| PREDICTED: RNA-binding protein 39-like isoform 1 [Bombus impatiens]
Length = 532
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 61/115 (53%), Gaps = 15/115 (13%)
Query: 99 AYVRFKNLESVEKALEMNGH------VIDEHTI--------RVDKALTTTKSNSHSIFIG 144
AYV FK+ ESV AL ++G ++ +HT + + ++ +++G
Sbjct: 217 AYVEFKDPESVTLALGLSGQKLLGVPIVVQHTQAEKNRMGNSMPNLMPKGQTGPMRLYVG 276
Query: 145 NIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
++ F E+ LR FE G+IDN++LI D T KG+G++ F+ ++ +KA E
Sbjct: 277 SLHFNITEDMLRGIFEPFGKIDNIQLIMDPETGRSKGYGFLTFR-NADDAKKALE 330
>gi|329112539|ref|NP_001192271.1| heterogeneous nuclear ribonucleoprotein A2/B1 isoform 1 [Xenopus
(Silurana) tropicalis]
Length = 350
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 58/111 (52%), Gaps = 7/111 (6%)
Query: 84 CIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALT---TTKSNSH- 139
C+ M KR+ +V F +++ V+ ++ H ID + +A+ + K +H
Sbjct: 38 CVVMRDPASKRSRGFGFVTFSSMDEVDASMAARPHTIDGRVVEPKRAVAREESAKPGAHV 97
Query: 140 ---SIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 187
+F+G I + EE LR+ FE G+I+++ +I D+ + +GFG+V F
Sbjct: 98 TVKKLFVGGIKEDTEEHHLREYFEEYGKIESIEIITDKQSGKKRGFGFVTF 148
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/138 (23%), Positives = 55/138 (39%), Gaps = 52/138 (37%)
Query: 141 IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKA----------- 189
+FIG + FE E+ LR +E G++ + ++RD + +GFG+V F +
Sbjct: 11 LFIGGLSFETTEDSLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMDEVDASMAAR 70
Query: 190 -----------------------------------------EEEELRKAFESCGEIDNVR 208
EE LR+ FE G+I+++
Sbjct: 71 PHTIDGRVVEPKRAVAREESAKPGAHVTVKKLFVGGIKEDTEEHHLREYFEEYGKIESIE 130
Query: 209 LIRDQHTNIGKGFGYVNF 226
+I D+ + +GFG+V F
Sbjct: 131 IITDKQSGKKRGFGFVTF 148
>gi|134024345|gb|AAI35351.1| hnrpa2b1 protein [Xenopus (Silurana) tropicalis]
Length = 349
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 58/111 (52%), Gaps = 7/111 (6%)
Query: 84 CIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALT---TTKSNSH- 139
C+ M KR+ +V F +++ V+ ++ H ID + +A+ + K +H
Sbjct: 38 CVVMRDPASKRSRGFGFVTFSSMDEVDASMAARPHTIDGRVVEPKRAVAREESAKPGAHV 97
Query: 140 ---SIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 187
+F+G I + EE LR+ FE G+I+++ +I D+ + +GFG+V F
Sbjct: 98 TVKKLFVGGIKEDTEEHHLREYFEEYGKIESIEIITDKQSGKKRGFGFVTF 148
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/138 (23%), Positives = 55/138 (39%), Gaps = 52/138 (37%)
Query: 141 IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKA----------- 189
+FIG + FE E+ LR +E G++ + ++RD + +GFG+V F +
Sbjct: 11 LFIGGLSFETTEDSLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMDEVDASMAAR 70
Query: 190 -----------------------------------------EEEELRKAFESCGEIDNVR 208
EE LR+ FE G+I+++
Sbjct: 71 PHTIDGRVVEPKRAVAREESAKPGAHVTVKKLFVGGIKEDTEEHHLREYFEEYGKIESIE 130
Query: 209 LIRDQHTNIGKGFGYVNF 226
+I D+ + +GFG+V F
Sbjct: 131 IITDKQSGKKRGFGFVTF 148
>gi|89269835|emb|CAJ82537.1| heterogeneous nuclear ribonucleoprotein A2/B1 [Xenopus (Silurana)
tropicalis]
Length = 327
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 58/111 (52%), Gaps = 7/111 (6%)
Query: 84 CIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALT---TTKSNSH- 139
C+ M KR+ +V F +++ V+ ++ H ID + +A+ + K +H
Sbjct: 38 CVVMRDPASKRSRGFGFVTFSSMDEVDASMAARPHTIDGRVVEPKRAVAREESAKPGAHV 97
Query: 140 ---SIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 187
+F+G I + EE LR+ FE G+I+++ +I D+ + +GFG+V F
Sbjct: 98 TVKKLFVGGIKEDTEEHHLREYFEEYGKIESIEIITDKQSGKKRGFGFVTF 148
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/138 (23%), Positives = 55/138 (39%), Gaps = 52/138 (37%)
Query: 141 IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKA----------- 189
+FIG + FE E+ LR +E G++ + ++RD + +GFG+V F +
Sbjct: 11 LFIGGLSFETTEDSLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMDEVDASMAAR 70
Query: 190 -----------------------------------------EEEELRKAFESCGEIDNVR 208
EE LR+ FE G+I+++
Sbjct: 71 PHTIDGRVVEPKRAVAREESAKPGAHVTVKKLFVGGIKEDTEEHHLREYFEEYGKIESIE 130
Query: 209 LIRDQHTNIGKGFGYVNF 226
+I D+ + +GFG+V F
Sbjct: 131 IITDKQSGKKRGFGFVTF 148
>gi|329112537|ref|NP_001016926.2| heterogeneous nuclear ribonucleoprotein A2/B1 isoform 2 [Xenopus
(Silurana) tropicalis]
Length = 328
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 58/111 (52%), Gaps = 7/111 (6%)
Query: 84 CIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALT---TTKSNSH- 139
C+ M KR+ +V F +++ V+ ++ H ID + +A+ + K +H
Sbjct: 38 CVVMRDPASKRSRGFGFVTFSSMDEVDASMAARPHTIDGRVVEPKRAVAREESAKPGAHV 97
Query: 140 ---SIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 187
+F+G I + EE LR+ FE G+I+++ +I D+ + +GFG+V F
Sbjct: 98 TVKKLFVGGIKEDTEEHHLREYFEEYGKIESIEIITDKQSGKKRGFGFVTF 148
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/138 (23%), Positives = 55/138 (39%), Gaps = 52/138 (37%)
Query: 141 IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKA----------- 189
+FIG + FE E+ LR +E G++ + ++RD + +GFG+V F +
Sbjct: 11 LFIGGLSFETTEDSLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMDEVDASMAAR 70
Query: 190 -----------------------------------------EEEELRKAFESCGEIDNVR 208
EE LR+ FE G+I+++
Sbjct: 71 PHTIDGRVVEPKRAVAREESAKPGAHVTVKKLFVGGIKEDTEEHHLREYFEEYGKIESIE 130
Query: 209 LIRDQHTNIGKGFGYVNF 226
+I D+ + +GFG+V F
Sbjct: 131 IITDKQSGKKRGFGFVTF 148
>gi|395536629|ref|XP_003770315.1| PREDICTED: nucleolin [Sarcophilus harrisii]
Length = 668
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 66/117 (56%), Gaps = 8/117 (6%)
Query: 99 AYVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKS-NSHSIFIGNIPFEAEEEELRK 157
YV F++ E +EKA+E++G + I+++KA K ++ ++F+ N+P++ +EEL++
Sbjct: 407 GYVEFESAEDMEKAMELSGSKVLGSEIKLEKAKENKKDRDARTLFVKNLPYKVTQEELKE 466
Query: 158 AFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE--SCGEIDNVRLIRD 212
FE EI RL+ + KG YV FK E ++ KA E EID LI D
Sbjct: 467 VFEDAIEI---RLVCTKD-GTPKGIAYVEFKT-EADVDKALEEKQGTEIDGRALILD 518
>gi|70943753|ref|XP_741886.1| hypothetical protein [Plasmodium chabaudi chabaudi]
gi|56520546|emb|CAH84921.1| conserved hypothetical protein [Plasmodium chabaudi chabaudi]
Length = 239
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 67/126 (53%), Gaps = 2/126 (1%)
Query: 64 VETVRFRSVPVAD-ITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDE 122
VE+VRFRS+P+ + +K + + K + + N NA +R K E V L+ NG V +
Sbjct: 89 VESVRFRSLPLEEKYANNKKLGVMLKKFTDVKDNKNALIRMKRKEDVSLLLKKNGTVYNG 148
Query: 123 HTIRVDK-ALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKG 181
+ +RV+K + S S+ + N+ E++L + F+ EI VR++RD + +G
Sbjct: 149 YVLRVNKFGDQSNFSRKKSVCVKNLDRSLSEKDLYELFKGVDEIKGVRILRDLENSQSRG 208
Query: 182 FGYVNF 187
++ F
Sbjct: 209 VAFILF 214
>gi|307180960|gb|EFN68748.1| RNA-binding protein 39 [Camponotus floridanus]
Length = 529
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 61/115 (53%), Gaps = 15/115 (13%)
Query: 99 AYVRFKNLESVEKALEMNGH------VIDEHTI--------RVDKALTTTKSNSHSIFIG 144
AYV FK+ ESV AL ++G ++ +HT + + ++ +++G
Sbjct: 214 AYVEFKDPESVTLALGLSGQKLLGVPIVVQHTQAEKNRMGNSMPNLMPKGQTGPMRLYVG 273
Query: 145 NIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
++ F E+ LR FE G+IDN++LI D T KG+G++ F+ ++ +KA E
Sbjct: 274 SLHFNITEDMLRGIFEPFGKIDNIQLIMDPETGRSKGYGFLTFR-NADDAKKALE 327
>gi|340718898|ref|XP_003397899.1| PREDICTED: RNA-binding protein 39-like isoform 1 [Bombus
terrestris]
Length = 520
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 61/115 (53%), Gaps = 15/115 (13%)
Query: 99 AYVRFKNLESVEKALEMNGH------VIDEHTI--------RVDKALTTTKSNSHSIFIG 144
AYV FK+ ESV AL ++G ++ +HT + + ++ +++G
Sbjct: 205 AYVEFKDPESVTLALGLSGQKLLGVPIVVQHTQAEKNRMGNSMPNLMPKGQTGPMRLYVG 264
Query: 145 NIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
++ F E+ LR FE G+IDN++LI D T KG+G++ F+ ++ +KA E
Sbjct: 265 SLHFNITEDMLRGIFEPFGKIDNIQLIMDPETGRSKGYGFLTFR-NADDAKKALE 318
>gi|337451|gb|AAA36575.1| hnRNP type A/B protein [Homo sapiens]
gi|228098|prf||1717217A hnRNP protein A/B
Length = 284
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 61/116 (52%), Gaps = 3/116 (2%)
Query: 85 IKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKSNSHSIFIG 144
IKM+ + R+ ++ FK+ SVEK L+ H +D I KA+ K IF+G
Sbjct: 99 IKMDP-NTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKKAMAMKKDPVKKIFVG 157
Query: 145 NI-PFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
+ P EE++R+ F GEI+ + L D N +GF ++ FK EEE ++K E
Sbjct: 158 GLNPESPTEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFK-EEEPVKKVLE 212
>gi|328781105|ref|XP_624668.3| PREDICTED: RNA-binding protein 39-like [Apis mellifera]
Length = 506
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 61/115 (53%), Gaps = 15/115 (13%)
Query: 99 AYVRFKNLESVEKALEMNGH------VIDEHTI--------RVDKALTTTKSNSHSIFIG 144
AYV FK+ ESV AL ++G ++ +HT + + ++ +++G
Sbjct: 191 AYVEFKDPESVTLALGLSGQKLLGVPIVVQHTQAEKNRMGNSMPNLMPKGQTGPMRLYVG 250
Query: 145 NIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
++ F E+ LR FE G+IDN++LI D T KG+G++ F+ ++ +KA E
Sbjct: 251 SLHFNITEDMLRGIFEPFGKIDNIQLIMDPETGRSKGYGFLTFR-NADDAKKALE 304
>gi|134077058|emb|CAK39931.1| unnamed protein product [Aspergillus niger]
Length = 497
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 67/132 (50%), Gaps = 10/132 (7%)
Query: 88 NKVHEKRTNMNAYVRFKNLESVEKALE-MNGHVIDEHTIRVDKALTTTKSNSHS------ 140
NK + K N +V F + + E+A++ +NG I + IRV+ A + +N
Sbjct: 127 NKFNSKGYNY-GFVEFDDPGAAERAMQTLNGRRIHQSEIRVNWAYQSNSTNKEDTSNHFH 185
Query: 141 IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFES 200
IF+G++ E +E L +AF + G + R++ D T +G+G+V F+ E + KA S
Sbjct: 186 IFVGDLSNEVNDEVLLQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFR-ERSDADKALSS 244
Query: 201 C-GEIDNVRLIR 211
GE R IR
Sbjct: 245 MDGEWLGSRAIR 256
>gi|391347243|ref|XP_003747874.1| PREDICTED: cleavage stimulation factor subunit 2-like [Metaseiulus
occidentalis]
Length = 422
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 46/69 (66%)
Query: 123 HTIRVDKALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGF 182
+T++ + ++ + ++ S+F+GNIP++A EE+L+ FE G + N RL+ D+ T KG+
Sbjct: 2 NTLQRNVDVSVAEKSACSVFVGNIPYDATEEQLKTIFEEVGPVVNFRLVYDRETGKPKGY 61
Query: 183 GYVNFKAEE 191
G+ FK +E
Sbjct: 62 GFCEFKDQE 70
Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 32/54 (59%)
Query: 183 GYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKVSFTTLSSI 236
G + + A EE+L+ FE G + N RL+ D+ T KG+G+ FK T +S++
Sbjct: 23 GNIPYDATEEQLKTIFEEVGPVVNFRLVYDRETGKPKGYGFCEFKDQETAMSAM 76
>gi|332019312|gb|EGI59819.1| RNA-binding protein 39 [Acromyrmex echinatior]
Length = 528
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 61/115 (53%), Gaps = 15/115 (13%)
Query: 99 AYVRFKNLESVEKALEMNGH------VIDEHTI--------RVDKALTTTKSNSHSIFIG 144
AYV FK+ ESV AL ++G ++ +HT + + ++ +++G
Sbjct: 213 AYVEFKDPESVTLALGLSGQKLLGVPIVVQHTQAEKNRMGNSMPNLMPKGQTGPMRLYVG 272
Query: 145 NIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
++ F E+ LR FE G+IDN++LI D T KG+G++ F+ ++ +KA E
Sbjct: 273 SLHFNITEDMLRGIFEPFGKIDNIQLIMDPETGRSKGYGFLTFR-NADDAKKALE 326
>gi|426232266|ref|XP_004010154.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D0 [Ovis aries]
Length = 421
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 60/111 (54%), Gaps = 10/111 (9%)
Query: 94 RTNMNAYVRFKNLESVEKALE-----MNGHVIDEHTIRVDKALTTTKSNSHSIFIGNIPF 148
R+ +V FK ESV+K ++ +NG VID + K TK IF+G +
Sbjct: 202 RSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMK----TKEPVKKIFVGGLSP 257
Query: 149 EAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
+ EE++R+ F GE++++ L D TN +GF ++ FK EEE ++K E
Sbjct: 258 DTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFK-EEEPVKKIME 307
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 31/142 (21%), Positives = 54/142 (38%), Gaps = 46/142 (32%)
Query: 132 TTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK--- 188
T + +FIG + ++ +++L+ F GE+ + L D T +GFG+V FK
Sbjct: 156 ATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESE 215
Query: 189 -------------------------------------------AEEEELRKAFESCGEID 205
EE++R+ F GE++
Sbjct: 216 SVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVE 275
Query: 206 NVRLIRDQHTNIGKGFGYVNFK 227
++ L D TN +GF ++ FK
Sbjct: 276 SIELPMDNKTNKRRGFCFITFK 297
>gi|410914854|ref|XP_003970902.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A/B-like
[Takifugu rubripes]
Length = 307
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 57/107 (53%), Gaps = 1/107 (0%)
Query: 94 RTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKSNSHSIFIGNIPFEAEEE 153
R+ +V FK+ SVEK LE H +D I +A+ K IF+G + EA EE
Sbjct: 95 RSRGFGFVLFKDPSSVEKVLEQKEHRLDGRLIDPKRAMAMKKEPVKKIFVGGLIPEATEE 154
Query: 154 ELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFES 200
+R+ F GEI+N+ L D +N +GF ++ +K EE +K E+
Sbjct: 155 NIREYFGEYGEIENIELPLDPKSNKRRGFIFITYK-EEASAKKCLEN 200
>gi|74001731|ref|XP_858286.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D-like isoform 9
[Canis lupus familiaris]
Length = 363
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 85/199 (42%), Gaps = 30/199 (15%)
Query: 14 PTQNRNLMSKLKVFLNIWKMALKLKMNPSLTKSKNHAL-----------SSVTSMFKPYG 62
P N M + + NI + A K+N S + + + +T +G
Sbjct: 113 PADNSAAMEDMNEYSNIEEFAEGSKINASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFG 172
Query: 63 EVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDE 122
EV ++ PV R+ +V FK+ SV+K LE+ H +D
Sbjct: 173 EVVDCTIKTDPVTG-----------------RSRGFGFVLFKDAASVDKVLELKEHKLDG 215
Query: 123 HTIRVDKALT-TTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKG 181
I +A K +F+G + + EE++++ F + GEI+N+ L D TN +G
Sbjct: 216 KLIDPKRAKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRG 275
Query: 182 FGYVNFKAEEEELRKAFES 200
F ++ + +EE ++K ES
Sbjct: 276 FCFITY-TDEEPVKKLLES 293
>gi|380806927|gb|AFE75339.1| RNA-binding protein Musashi homolog 1, partial [Macaca mulatta]
Length = 216
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 59/115 (51%), Gaps = 5/115 (4%)
Query: 82 KACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVD-----KALTTTKS 136
K C+ M KR+ +V F + V+K L + H +D TI +A +
Sbjct: 3 KECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVT 62
Query: 137 NSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEE 191
+ IF+G + E++++ FE G++D+ L+ D+ TN +GFG+V F++E+
Sbjct: 63 RTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESED 117
>gi|412993493|emb|CCO14004.1| predicted protein [Bathycoccus prasinos]
Length = 447
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 82/169 (48%), Gaps = 42/169 (24%)
Query: 63 EVETVRFRSVPVA------DITLPRKACI-----KMNKVHEKRTNMN--------AYVRF 103
EV + R RSVP+ D +P +A I K K E ++N AYV +
Sbjct: 136 EVVSARIRSVPLKKSADEKDAKVPVRAKILGSLGKRKKDTENSGSINEASKSGCTAYVVW 195
Query: 104 KNLESVEKALEM-NGHVIDEHTIRVDKALTTTKSN---------------SHSIFIGNIP 147
K + E+A++ N + HT+RVD A ++++ + S+FIGN+P
Sbjct: 196 KREKDCERAVKKGNMQKFNGHTLRVDFAAKSSQTTKGGKGDDGSGVTYDRTKSVFIGNLP 255
Query: 148 FEAEEEELRKAF-------ESCGEIDNVRLIRDQHTNIGKGFGYVNFKA 189
F+ +EE+ + F E E++ VR++RD+ T GKG +V FK+
Sbjct: 256 FDVSDEEVIEIFTKNKEYKELKTELEAVRVVRDKATRTGKGIAFVLFKS 304
>gi|344284992|ref|XP_003414248.1| PREDICTED: hypothetical protein LOC100654996 [Loxodonta africana]
Length = 595
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 68/131 (51%), Gaps = 17/131 (12%)
Query: 74 VADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALE-----MNGHVIDEHTIRVD 128
V D TL K++ + R+ +V FK ESV+K ++ +NG VID +
Sbjct: 363 VVDCTL------KLDPI-TGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAM 415
Query: 129 KALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK 188
K TK IF+G + + EE++R+ F GE++++ L D TN +GF ++ FK
Sbjct: 416 K----TKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFK 471
Query: 189 AEEEELRKAFE 199
EEE ++K E
Sbjct: 472 -EEEPVKKIME 481
Score = 41.2 bits (95), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 31/142 (21%), Positives = 54/142 (38%), Gaps = 46/142 (32%)
Query: 132 TTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK--- 188
T + +FIG + ++ +++L+ F GE+ + L D T +GFG+V FK
Sbjct: 330 ATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESE 389
Query: 189 -------------------------------------------AEEEELRKAFESCGEID 205
EE++R+ F GE++
Sbjct: 390 SVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVE 449
Query: 206 NVRLIRDQHTNIGKGFGYVNFK 227
++ L D TN +GF ++ FK
Sbjct: 450 SIELPMDNKTNKRRGFCFITFK 471
>gi|380012525|ref|XP_003690330.1| PREDICTED: LOW QUALITY PROTEIN: RNA-binding protein 39-like [Apis
florea]
Length = 506
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 61/115 (53%), Gaps = 15/115 (13%)
Query: 99 AYVRFKNLESVEKALEMNGH------VIDEHTI--------RVDKALTTTKSNSHSIFIG 144
AYV FK+ ESV AL ++G ++ +HT + + ++ +++G
Sbjct: 191 AYVEFKDPESVTLALGLSGQKLLGVPIVVQHTQAEKNRMGNSMPNLMPKGQTGPMRLYVG 250
Query: 145 NIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
++ F E+ LR FE G+IDN++LI D T KG+G++ F+ ++ +KA E
Sbjct: 251 SLHFNITEDMLRGIFEPFGKIDNIQLIMDPXTGRSKGYGFLTFR-NADDAKKALE 304
>gi|358371808|dbj|GAA88414.1| nuclear and cytoplasmic polyadenylated RNA-binding protein pub1
[Aspergillus kawachii IFO 4308]
Length = 478
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 67/132 (50%), Gaps = 10/132 (7%)
Query: 88 NKVHEKRTNMNAYVRFKNLESVEKALE-MNGHVIDEHTIRVDKALTTTKSNSHS------ 140
NK + K N +V F + + E+A++ +NG I + IRV+ A + +N
Sbjct: 127 NKFNSKGYNY-GFVEFDDPGAAERAMQTLNGRRIHQSEIRVNWAYQSNSTNKEDTSNHFH 185
Query: 141 IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFES 200
IF+G++ E +E L +AF + G + R++ D T +G+G+V F+ E + KA S
Sbjct: 186 IFVGDLSNEVNDEVLLQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFR-ERSDADKALSS 244
Query: 201 C-GEIDNVRLIR 211
GE R IR
Sbjct: 245 MDGEWLGSRAIR 256
>gi|145253298|ref|XP_001398162.1| nucleolar protein 12 [Aspergillus niger CBS 513.88]
gi|134083724|emb|CAK42963.1| unnamed protein product [Aspergillus niger]
Length = 521
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 58/212 (27%), Positives = 102/212 (48%), Gaps = 26/212 (12%)
Query: 26 VFL-NIWKMALKLK-MNPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADIT-LPRK 82
VFL N+ A+K K +L K LS++ P+ +VE++RFRS A +P++
Sbjct: 193 VFLGNVSSEAIKSKSAKKTLLKHLASFLSTLPESTGPH-KVESIRFRSTAFASGGGVPKR 251
Query: 83 ACIKMNKVHEKRTN-MNAYVRFKNLESVEKA-LEMNGHVIDEHTIRVDK-ALTTTKSNSH 139
A +V + T NAY + +++ KA +NG V+ + +RVD A + +
Sbjct: 252 ASFAKQEVLDDTTPCTNAYAVYSTVQAARKAPAALNGTVVLDRHLRVDSVAHPSPIDHKR 311
Query: 140 SIFIGNIPF-----EAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEEL 194
+F+GN+ F + ++E+ +K + +++ +G + F A
Sbjct: 312 CVFVGNLDFVDNEVKPDDEQKKKKKRAPADVE-------------EGL-WRTFNAHTGRS 357
Query: 195 RKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 226
K G +++VR++RD T +GKGF YV F
Sbjct: 358 NKDKPKNGNVESVRVVRDSLTRVGKGFAYVQF 389
>gi|317030432|ref|XP_001392545.2| nuclear and cytoplasmic polyadenylated RNA-binding protein pub1
[Aspergillus niger CBS 513.88]
Length = 478
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 67/132 (50%), Gaps = 10/132 (7%)
Query: 88 NKVHEKRTNMNAYVRFKNLESVEKALE-MNGHVIDEHTIRVDKALTTTKSNSHS------ 140
NK + K N +V F + + E+A++ +NG I + IRV+ A + +N
Sbjct: 127 NKFNSKGYNY-GFVEFDDPGAAERAMQTLNGRRIHQSEIRVNWAYQSNSTNKEDTSNHFH 185
Query: 141 IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFES 200
IF+G++ E +E L +AF + G + R++ D T +G+G+V F+ E + KA S
Sbjct: 186 IFVGDLSNEVNDEVLLQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFR-ERSDADKALSS 244
Query: 201 C-GEIDNVRLIR 211
GE R IR
Sbjct: 245 MDGEWLGSRAIR 256
>gi|296478518|tpg|DAA20633.1| TPA: musashi 1 [Bos taurus]
Length = 342
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 59/115 (51%), Gaps = 5/115 (4%)
Query: 82 KACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVD-----KALTTTKS 136
K C+ M KR+ +V F + V+K L + H +D TI +A +
Sbjct: 47 KECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVT 106
Query: 137 NSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEE 191
+ IF+G + E++++ FE G++D+ L+ D+ TN +GFG+V F++E+
Sbjct: 107 RTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESED 161
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 57/137 (41%), Gaps = 50/137 (36%)
Query: 141 IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF------------- 187
+FIG + ++ +E LR+ F GE+ ++RD T +GFG+V F
Sbjct: 22 MFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS 81
Query: 188 -----------------KAEE--------------------EELRKAFESCGEIDNVRLI 210
+A+ E++++ FE G++D+ L+
Sbjct: 82 RHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLM 141
Query: 211 RDQHTNIGKGFGYVNFK 227
D+ TN +GFG+V F+
Sbjct: 142 FDKTTNRHRGFGFVTFE 158
>gi|348584450|ref|XP_003477985.1| PREDICTED: RNA-binding protein Musashi homolog 1-like [Cavia
porcellus]
Length = 366
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 59/115 (51%), Gaps = 5/115 (4%)
Query: 82 KACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVD-----KALTTTKS 136
K C+ M KR+ +V F + V+K L + H +D TI +A +
Sbjct: 51 KECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVT 110
Query: 137 NSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEE 191
+ IF+G + E++++ FE G++D+ L+ D+ TN +GFG+V F++E+
Sbjct: 111 RTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESED 165
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/137 (22%), Positives = 55/137 (40%), Gaps = 50/137 (36%)
Query: 141 IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEE--------- 191
+FIG + ++ +E LR+ F GE+ ++RD T +GFG+V F +
Sbjct: 26 MFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS 85
Query: 192 -----------------------------------------EELRKAFESCGEIDNVRLI 210
E++++ FE G++D+ L+
Sbjct: 86 RHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLM 145
Query: 211 RDQHTNIGKGFGYVNFK 227
D+ TN +GFG+V F+
Sbjct: 146 FDKTTNRHRGFGFVTFE 162
>gi|335302749|ref|XP_003133427.2| PREDICTED: heterogeneous nuclear ribonucleoproteins A2/B1-like [Sus
scrofa]
Length = 447
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 54/111 (48%), Gaps = 7/111 (6%)
Query: 84 CIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALT---TTKSNSH- 139
C+ M KR+ +V F ++ V+ A+ H ID + +A+ + K +H
Sbjct: 144 CVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHV 203
Query: 140 ---SIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 187
+F+G I + EE LR FE G++D + +I D+ + +GFG+ F
Sbjct: 204 TVKKLFVGGIKEDTEEHHLRDYFEEYGKVDTIEIITDRQSGKKRGFGFFTF 254
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/138 (23%), Positives = 52/138 (37%), Gaps = 52/138 (37%)
Query: 141 IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKA----------- 189
+FIG + FE EE LR +E G++ + ++RD + +GFG+V F +
Sbjct: 117 LFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAAR 176
Query: 190 -----------------------------------------EEEELRKAFESCGEIDNVR 208
EE LR FE G++D +
Sbjct: 177 PHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKVDTIE 236
Query: 209 LIRDQHTNIGKGFGYVNF 226
+I D+ + +GFG+ F
Sbjct: 237 IITDRQSGKKRGFGFFTF 254
Score = 37.0 bits (84), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 67/152 (44%), Gaps = 30/152 (19%)
Query: 78 TLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKSN 137
++ +KA + K+HE ++ + + F +EK L +D TI + T+++
Sbjct: 39 SVSQKAGLPEAKMHEFQS-FDYSLSFHRKYFMEKRLLDKSTALDLPTISGQRNWATSEAK 97
Query: 138 SHSIFIGNIPFEA---EEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEEL 194
+ + +P E E+E+ RK F G ++F+ EE L
Sbjct: 98 T----LETVPLERKKREKEQFRKLF----------------------IGGLSFETTEESL 131
Query: 195 RKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 226
R +E G++ + ++RD + +GFG+V F
Sbjct: 132 RNYYEQWGKLTDCVVMRDPASKRSRGFGFVTF 163
>gi|403281821|ref|XP_003932373.1| PREDICTED: RNA-binding protein Musashi homolog 1 [Saimiri
boliviensis boliviensis]
Length = 352
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 59/115 (51%), Gaps = 5/115 (4%)
Query: 82 KACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVD-----KALTTTKS 136
K C+ M KR+ +V F + V+K L + H +D TI +A +
Sbjct: 48 KECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVT 107
Query: 137 NSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEE 191
+ IF+G + E++++ FE G++D+ L+ D+ TN +GFG+V F++E+
Sbjct: 108 RTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESED 162
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/146 (22%), Positives = 58/146 (39%), Gaps = 50/146 (34%)
Query: 132 TTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEE 191
+ T S +FIG + ++ +E LR+ F GE+ ++RD T +GFG+V F +
Sbjct: 14 SPTYHPSSKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQA 73
Query: 192 --------------------------------------------------EELRKAFESC 201
E++++ FE
Sbjct: 74 GVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSVNTTVEDVKQYFEQF 133
Query: 202 GEIDNVRLIRDQHTNIGKGFGYVNFK 227
G++D+ L+ D+ TN +GFG+V F+
Sbjct: 134 GKVDDAMLMFDKTTNRHRGFGFVTFE 159
>gi|47214361|emb|CAG01206.1| unnamed protein product [Tetraodon nigroviridis]
Length = 256
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 67/126 (53%), Gaps = 5/126 (3%)
Query: 75 ADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTT 134
D+T IKM++ R+ ++ FK+ SVEK LE H +D I +AL
Sbjct: 24 GDVT---DCTIKMDQ-GTGRSRGFGFILFKDPASVEKVLEQKEHKLDGRVIDPKRALAMK 79
Query: 135 KSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEEL 194
K +F+G + + +E +++ FE GEI+N+ L +D T +GF ++ +K EE +
Sbjct: 80 KEPVKKVFVGGLNPDTSKEVIQEYFEEFGEIENIELPQDPKTEKRRGFVFITYK-EEACV 138
Query: 195 RKAFES 200
+KA E+
Sbjct: 139 KKALEN 144
>gi|1814274|gb|AAC50956.1| ABBP-1 [Homo sapiens]
Length = 331
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 61/116 (52%), Gaps = 3/116 (2%)
Query: 85 IKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKSNSHSIFIG 144
IKM+ + R+ ++ FK+ SVEK L+ H +D I KA+ K IF+G
Sbjct: 99 IKMDP-NTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKKAMAMKKDPVKKIFVG 157
Query: 145 NI-PFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
+ P EE++R+ F GEI+ + L D N +GF ++ FK EEE ++K E
Sbjct: 158 GLNPESPTEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFK-EEEPVKKVLE 212
>gi|332840634|ref|XP_003314028.1| PREDICTED: RNA-binding protein Musashi homolog 1, partial [Pan
troglodytes]
Length = 324
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 59/115 (51%), Gaps = 5/115 (4%)
Query: 82 KACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVD-----KALTTTKS 136
K C+ M KR+ +V F + V+K L + H +D TI +A +
Sbjct: 9 KECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVT 68
Query: 137 NSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEE 191
+ IF+G + E++++ FE G++D+ L+ D+ TN +GFG+V F++E+
Sbjct: 69 RTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESED 123
>gi|194214277|ref|XP_001492007.2| PREDICTED: probable RNA-binding protein 19 [Equus caballus]
Length = 962
Score = 59.7 bits (143), Expect = 1e-06, Method: Composition-based stats.
Identities = 37/118 (31%), Positives = 64/118 (54%), Gaps = 17/118 (14%)
Query: 99 AYVRFKNLESVEKAL-EMNGHVIDEHTIRV-------DKALTTT-------KSNSHSIFI 143
+V ++ E +KAL ++ GHV+D H + V ALT+ K + I +
Sbjct: 779 GFVEYRKPEQAQKALKQLQGHVVDSHKLEVRISERATKPALTSARKKQVPRKQTTSKILV 838
Query: 144 GNIPFEAEEEELRKAFESCGEIDNVRLIRD-QHTNIGKGFGYVNFKAEEEELRKAFES 200
NIPF+A+ E+R+ F + GE+ VRL + T +GFG+V+F +++ ++AF +
Sbjct: 839 RNIPFQADSREIRELFSTFGELKTVRLPKKLTGTGSHRGFGFVDFLTKQDA-KRAFNA 895
Score = 42.4 bits (98), Expect = 0.17, Method: Composition-based stats.
Identities = 46/189 (24%), Positives = 74/189 (39%), Gaps = 36/189 (19%)
Query: 66 TVRFRSVP-------VADITLPRKACIKMNKVHEKRTNMNAYV--RFKNLESVEKALEMN 116
TV+ R P V + P K + + V N YV F + E V+KAL+ N
Sbjct: 297 TVKLRGAPFNVTEKNVVEFLAPLKP-VAIRIVRNAHGNKTGYVFVDFSSEEEVKKALKCN 355
Query: 117 GHVIDEHTIRV--DKALTTTK------------------------SNSHSIFIGNIPFEA 150
+ I V +K + T + ++S +F+ N+P+ +
Sbjct: 356 REYMGGRYIEVFREKNIPTAEGPPKNSAKPWQGRTLGENEEEEDLADSGRLFVRNLPYTS 415
Query: 151 EEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLI 210
EEEL + F G + + D T KGF +V F E +R E G++ R++
Sbjct: 416 TEEELEQLFSRYGPLSELHYPIDGLTKKPKGFAFVTFMFPEHAVRAYAEVDGQVFQGRML 475
Query: 211 RDQHTNIGK 219
+ I K
Sbjct: 476 HVLPSTIKK 484
>gi|449477049|ref|XP_002196403.2| PREDICTED: RNA-binding protein Musashi homolog 1 [Taeniopygia
guttata]
Length = 330
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 59/115 (51%), Gaps = 5/115 (4%)
Query: 82 KACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVD-----KALTTTKS 136
K C+ M KR+ +V F + V+K L + H +D TI +A +
Sbjct: 26 KECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVT 85
Query: 137 NSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEE 191
+ IF+G + E++++ FE G++D+ L+ D+ TN +GFG+V F++E+
Sbjct: 86 RTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESED 140
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/137 (22%), Positives = 55/137 (40%), Gaps = 50/137 (36%)
Query: 141 IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEE--------- 191
+FIG + ++ +E LR+ F GE+ ++RD T +GFG+V F +
Sbjct: 1 MFIGGLSWQTTQEGLREYFSQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS 60
Query: 192 -----------------------------------------EELRKAFESCGEIDNVRLI 210
E++++ FE G++D+ L+
Sbjct: 61 RHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLM 120
Query: 211 RDQHTNIGKGFGYVNFK 227
D+ TN +GFG+V F+
Sbjct: 121 FDKTTNRHRGFGFVTFE 137
>gi|395833926|ref|XP_003789968.1| PREDICTED: RNA-binding protein Musashi homolog 1 [Otolemur
garnettii]
Length = 341
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 59/115 (51%), Gaps = 5/115 (4%)
Query: 82 KACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVD-----KALTTTKS 136
K C+ M KR+ +V F + V+K L + H +D TI +A +
Sbjct: 26 KECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVT 85
Query: 137 NSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEE 191
+ IF+G + E++++ FE G++D+ L+ D+ TN +GFG+V F++E+
Sbjct: 86 RTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESED 140
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/137 (22%), Positives = 55/137 (40%), Gaps = 50/137 (36%)
Query: 141 IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEE--------- 191
+FIG + ++ +E LR+ F GE+ ++RD T +GFG+V F +
Sbjct: 1 MFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS 60
Query: 192 -----------------------------------------EELRKAFESCGEIDNVRLI 210
E++++ FE G++D+ L+
Sbjct: 61 RHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLM 120
Query: 211 RDQHTNIGKGFGYVNFK 227
D+ TN +GFG+V F+
Sbjct: 121 FDKTTNRHRGFGFVTFE 137
>gi|391339574|ref|XP_003744123.1| PREDICTED: heterogeneous nuclear ribonucleoproteins A2/B1-like
[Metaseiulus occidentalis]
Length = 334
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 57/110 (51%), Gaps = 6/110 (5%)
Query: 84 CIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKSNSHS--- 140
C+ M + KR+ +V + + + V++A+ H+ID T+ +A+ +S+ +
Sbjct: 52 CVVMTDPYSKRSRGFGFVTYADSQMVDQAMAQRPHIIDNRTVEPKRAIPREQSSGDTNMS 111
Query: 141 ---IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 187
+F+G + E E E+LR F G I+ V + ++ T +GFG+V F
Sbjct: 112 VKKLFVGGLSTETEAEDLRNYFGKYGSIEEVIIATERDTGRKRGFGFVTF 161
>gi|296485782|tpg|DAA27897.1| TPA: heterogeneous nuclear ribonucleoprotein A2/B1-like [Bos
taurus]
Length = 360
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 57/111 (51%), Gaps = 7/111 (6%)
Query: 84 CIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKS------- 136
C+ + + +++ +V F ++ V+ A+ H ID + +A++ KS
Sbjct: 58 CVVIRGLASQKSRGFGFVTFSSVAEVDAAMAARPHSIDGRVVDPKRAVSREKSEKQGSLV 117
Query: 137 NSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 187
N +F+G I + EE LR+ FE G+ID + +I D+ + +GFG+V F
Sbjct: 118 NVKKLFVGGIKEDTEEHHLREYFEKYGKIDAIEIITDRQSGKKRGFGFVTF 168
Score = 44.7 bits (104), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 32/138 (23%), Positives = 52/138 (37%), Gaps = 52/138 (37%)
Query: 141 IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKA----------- 189
+FIG + E EE L+ ++ GE+ + +IR + +GFG+V F +
Sbjct: 31 LFIGGLSSETTEESLKNYYQQWGELTDCVVIRGLASQKSRGFGFVTFSSVAEVDAAMAAR 90
Query: 190 -----------------------------------------EEEELRKAFESCGEIDNVR 208
EE LR+ FE G+ID +
Sbjct: 91 PHSIDGRVVDPKRAVSREKSEKQGSLVNVKKLFVGGIKEDTEEHHLREYFEKYGKIDAIE 150
Query: 209 LIRDQHTNIGKGFGYVNF 226
+I D+ + +GFG+V F
Sbjct: 151 IITDRQSGKKRGFGFVTF 168
>gi|392465146|dbj|BAM24697.1| musashi homolog 1 [Sus scrofa]
Length = 362
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 59/115 (51%), Gaps = 5/115 (4%)
Query: 82 KACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVD-----KALTTTKS 136
K C+ M KR+ +V F + V+K L + H +D TI +A +
Sbjct: 47 KECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVT 106
Query: 137 NSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEE 191
+ IF+G + E++++ FE G++D+ L+ D+ TN +GFG+V F++E+
Sbjct: 107 RTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESED 161
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/137 (22%), Positives = 55/137 (40%), Gaps = 50/137 (36%)
Query: 141 IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEE--------- 191
+FIG + ++ +E LR+ F GE+ ++RD T +GFG+V F +
Sbjct: 22 MFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS 81
Query: 192 -----------------------------------------EELRKAFESCGEIDNVRLI 210
E++++ FE G++D+ L+
Sbjct: 82 RHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLM 141
Query: 211 RDQHTNIGKGFGYVNFK 227
D+ TN +GFG+V F+
Sbjct: 142 FDKTTNRHRGFGFVTFE 158
>gi|300121030|emb|CBK21412.2| unnamed protein product [Blastocystis hominis]
Length = 296
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 54/106 (50%), Gaps = 12/106 (11%)
Query: 99 AYVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKSNSHSI------------FIGNI 146
+V F + + KA+E NG +I+ IRV+ A + NS ++ F+ ++
Sbjct: 47 GFVSFSTEDGLNKAMEQNGSLINGREIRVEVAKGSLGKNSENVRQNRNYNDENKVFVSSL 106
Query: 147 PFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEE 192
+ +E LR AF CG+I++ +++ D+ T +G G V F EE
Sbjct: 107 SWNTTDEMLRDAFSQCGKIEHYKILTDRQTGRSRGMGIVKFSTREE 152
>gi|308475439|ref|XP_003099938.1| hypothetical protein CRE_24556 [Caenorhabditis remanei]
gi|308266205|gb|EFP10158.1| hypothetical protein CRE_24556 [Caenorhabditis remanei]
Length = 408
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 63/123 (51%), Gaps = 10/123 (8%)
Query: 99 AYVRFKNLESVEKALE-MNGHVIDEHTIRVDKALTTTKSNSHS---------IFIGNIPF 148
A+V F + +AL+ MNG + E +RV+ A+ + + +F+G++
Sbjct: 82 AFVEFSDHNQASQALQSMNGRQLLEREMRVNWAVEPNQPGDRNKPETSRHFHVFVGDLSA 141
Query: 149 EAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVR 208
E + +LR+AF GE+ ++IRD TN KG+G+V++ E+ R + G+ R
Sbjct: 142 EIDSTKLREAFLPFGEVSEAKIIRDNATNKAKGYGFVSYPRREDAERAIEQMNGQWLGRR 201
Query: 209 LIR 211
IR
Sbjct: 202 TIR 204
Score = 37.0 bits (84), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 37/68 (54%), Gaps = 7/68 (10%)
Query: 128 DKALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 187
D+ +++ S+++GNI E+E+R+ FE G+I VR+ + Q G+ +V F
Sbjct: 246 DEVFREAAADNTSVYVGNIN-SLTEDEIRRGFERFGQIVEVRIFKSQ------GYAFVKF 298
Query: 188 KAEEEELR 195
+ +E R
Sbjct: 299 EQKESAAR 306
>gi|440906208|gb|ELR56498.1| Putative RNA-binding protein 19 [Bos grunniens mutus]
Length = 947
Score = 59.7 bits (143), Expect = 1e-06, Method: Composition-based stats.
Identities = 37/118 (31%), Positives = 64/118 (54%), Gaps = 17/118 (14%)
Query: 99 AYVRFKNLESVEKAL-EMNGHVIDEHTIRV-------DKALTTT-------KSNSHSIFI 143
+V ++ E +KAL ++ GHV+D H + V ALT+ K + I +
Sbjct: 764 GFVEYRKPEQAQKALKQLQGHVVDGHKLEVRISERATKPALTSARKKQAPRKQTTSKILV 823
Query: 144 GNIPFEAEEEELRKAFESCGEIDNVRLIRD-QHTNIGKGFGYVNFKAEEEELRKAFES 200
NIPF+A+ E+R+ F + GE+ VRL + T +GFG+V+F +++ ++AF +
Sbjct: 824 RNIPFQADSREIRELFSTFGELKTVRLPKKLTGTGTHRGFGFVDFLTKQDA-KRAFNA 880
Score = 46.6 bits (109), Expect = 0.010, Method: Composition-based stats.
Identities = 52/227 (22%), Positives = 90/227 (39%), Gaps = 39/227 (17%)
Query: 32 KMALKLKMNPSLTKSKNHALSSVTSMFKPYGEVE-----TVRFRSVP-------VADITL 79
+ A K++ T ++ LS++T KP + E TV+ R P V +
Sbjct: 259 REAAPAKVSTPGTSVRSFLLSAITQTEKPASQKEPTTPHTVKLRGAPFNVTEKNVMEFLA 318
Query: 80 PRK-ACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRV--DKALTTTKS 136
P K A I++ + +V F + E V KAL+ N + I V ++ + K+
Sbjct: 319 PLKPAAIRVVRNAHGNKTGYVFVDFSSEEEVRKALKCNREYMGGRYIEVFRERNVPAAKA 378
Query: 137 ------------------------NSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIR 172
+S +F+ N+P+ + EE+L K F G + +
Sbjct: 379 PLKNGAKPWQGWTLGEHEEEEDLADSGRLFVRNLPYTSSEEDLEKLFSRYGPVSELHYPI 438
Query: 173 DQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGK 219
D T KGF +V F E ++ E G++ R++ + I K
Sbjct: 439 DSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPSTIKK 485
>gi|114051910|ref|NP_001039420.1| probable RNA-binding protein 19 [Bos taurus]
gi|88954099|gb|AAI14030.1| RNA binding motif protein 19 [Bos taurus]
Length = 920
Score = 59.7 bits (143), Expect = 1e-06, Method: Composition-based stats.
Identities = 37/118 (31%), Positives = 64/118 (54%), Gaps = 17/118 (14%)
Query: 99 AYVRFKNLESVEKAL-EMNGHVIDEHTIRV-------DKALTTT-------KSNSHSIFI 143
+V ++ E +KAL ++ GHV+D H + V ALT+ K + I +
Sbjct: 737 GFVEYRKPEQAQKALKQLQGHVVDGHKLEVRISERATKPALTSARKKQAPRKQTTSKILV 796
Query: 144 GNIPFEAEEEELRKAFESCGEIDNVRLIRD-QHTNIGKGFGYVNFKAEEEELRKAFES 200
NIPF+A+ E+R+ F + GE+ VRL + T +GFG+V+F +++ ++AF +
Sbjct: 797 RNIPFQADSREIRELFSTFGELKTVRLPKKLTGTGTHRGFGFVDFLTKQDA-KRAFNA 853
Score = 42.0 bits (97), Expect = 0.19, Method: Composition-based stats.
Identities = 28/103 (27%), Positives = 46/103 (44%), Gaps = 6/103 (5%)
Query: 117 GHVIDEHTIRVDKALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHT 176
G + EH D A +S +F+ N+P+ + EE+L K F G + + D T
Sbjct: 347 GRTLGEHEEEEDLA------DSGRLFVRNLPYTSSEEDLEKLFSRYGPVSELHYPIDSLT 400
Query: 177 NIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGK 219
KGF +V F E ++ E G++ R++ + I K
Sbjct: 401 KKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPSTIKK 443
>gi|254572962|ref|XP_002493590.1| Nucleolar protein that binds nuclear localization sequences
[Komagataella pastoris GS115]
gi|238033389|emb|CAY71411.1| Nucleolar protein that binds nuclear localization sequences
[Komagataella pastoris GS115]
gi|328354581|emb|CCA40978.1| Nuclear localization sequence-binding protein [Komagataella
pastoris CBS 7435]
Length = 362
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 65/138 (47%), Gaps = 21/138 (15%)
Query: 94 RTNMNAYVRFKNLESVEKALE-MNGHVIDEHTIRVD-----KALTTTKSN---------- 137
R+ YV F N S EKALE M G ID I VD A ++N
Sbjct: 165 RSRGYGYVDFDNKASAEKALEEMQGKEIDGRPINVDMSNSKPAAPAARNNDRASQYGDKR 224
Query: 138 ---SHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEEL 194
S ++F+GN+ F+A+ + L + F G + +VR+ T KGFGYV F + +E
Sbjct: 225 SPPSDTLFLGNLSFQADRDTLFELFSKHGNVTSVRIPTHPETEQPKGFGYVQFSSVDEAT 284
Query: 195 RKAFESC-GEIDNVRLIR 211
A E+ GE + R IR
Sbjct: 285 -GALEALNGEYVDNRPIR 301
Score = 39.7 bits (91), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 31/48 (64%)
Query: 140 SIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 187
++F+G + + ++E L+K FE G + R++ ++ T +G+GYV+F
Sbjct: 127 TLFVGRLSWSIDDEWLKKEFEHIGGVVGARVMMERATGRSRGYGYVDF 174
>gi|291245050|ref|XP_002742404.1| PREDICTED: MGC81970 protein-like isoform 1 [Saccoglossus
kowalevskii]
Length = 556
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 61/120 (50%), Gaps = 14/120 (11%)
Query: 93 KRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKA-------------LTTTKSNSH 139
+R+ AYV F++ SV AL ++G + I V + L S
Sbjct: 197 RRSKGIAYVEFQDKNSVPLALGLSGQKLLSIPIMVQASQAEKNRAAQNSQNLQKGNSGPM 256
Query: 140 SIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
+++G++ F EE LR FE G+IDN++L++D T KG+G++ F + E+ +KA E
Sbjct: 257 RLYVGSLHFNITEEMLRGIFEPFGKIDNIQLMKDNETGRSKGYGFITFH-DAEDAKKALE 315
Score = 45.1 bits (105), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 29/44 (65%)
Query: 183 GYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 226
G ++F EE LR FE G+IDN++L++D T KG+G++ F
Sbjct: 261 GSLHFNITEEMLRGIFEPFGKIDNIQLMKDNETGRSKGYGFITF 304
>gi|115491713|ref|XP_001210484.1| hypothetical protein ATEG_00398 [Aspergillus terreus NIH2624]
gi|114197344|gb|EAU39044.1| hypothetical protein ATEG_00398 [Aspergillus terreus NIH2624]
Length = 478
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 67/132 (50%), Gaps = 10/132 (7%)
Query: 88 NKVHEKRTNMNAYVRFKNLESVEKALE-MNGHVIDEHTIRVDKALTTTKSNSHS------ 140
NK + K N +V F + + E+A++ +NG I + IRV+ A + +N
Sbjct: 127 NKFNSKGYNY-GFVEFDDPGAAERAMQTLNGRRIHQSEIRVNWAYQSNNTNKEDTSNHFH 185
Query: 141 IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFES 200
IF+G++ E +E L +AF + G + R++ D T +G+G+V F+ E + KA S
Sbjct: 186 IFVGDLSNEVNDEILLQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFR-ERSDAEKALSS 244
Query: 201 C-GEIDNVRLIR 211
GE R IR
Sbjct: 245 MDGEWLGSRAIR 256
>gi|355564741|gb|EHH21241.1| hypothetical protein EGK_04258 [Macaca mulatta]
Length = 324
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 59/115 (51%), Gaps = 5/115 (4%)
Query: 82 KACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVD-----KALTTTKS 136
K C+ M KR+ +V F + V+K L + H +D TI +A +
Sbjct: 28 KECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVT 87
Query: 137 NSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEE 191
+ IF+G + E++++ FE G++D+ L+ D+ TN +GFG+V F++E+
Sbjct: 88 RTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESED 142
>gi|351702220|gb|EHB05139.1| RNA-binding protein Musashi-like protein 1, partial [Heterocephalus
glaber]
Length = 329
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 59/115 (51%), Gaps = 5/115 (4%)
Query: 82 KACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVD-----KALTTTKS 136
K C+ M KR+ +V F + V+K L + H +D TI +A +
Sbjct: 14 KECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVT 73
Query: 137 NSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEE 191
+ IF+G + E++++ FE G++D+ L+ D+ TN +GFG+V F++E+
Sbjct: 74 RTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESED 128
>gi|322795213|gb|EFZ18035.1| hypothetical protein SINV_11488 [Solenopsis invicta]
Length = 455
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 64/131 (48%), Gaps = 11/131 (8%)
Query: 90 VHEKRTNMNAYVRFKNLESVEKALE-MNGHVIDEHTIRVDKALTTTK------SNSHSIF 142
+ E + A+V F N + AL MN E ++V+ A + SN H IF
Sbjct: 112 IREPGNDPYAFVEFTNHQCAATALAAMNKRSFLEKEMKVNWATSPGNQPKLDTSNHHHIF 171
Query: 143 IGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF--KAEEEELRKAFES 200
+G++ E E + L++AF GEI N R++RD T KG+ +V+F K+E E A
Sbjct: 172 VGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKSEAEAAINAMN- 230
Query: 201 CGEIDNVRLIR 211
G+ R IR
Sbjct: 231 -GQWLGSRSIR 240
>gi|281340836|gb|EFB16420.1| hypothetical protein PANDA_020894 [Ailuropoda melanoleuca]
Length = 329
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 59/115 (51%), Gaps = 5/115 (4%)
Query: 82 KACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVD-----KALTTTKS 136
K C+ M KR+ +V F + V+K L + H +D TI +A +
Sbjct: 14 KECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVT 73
Query: 137 NSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEE 191
+ IF+G + E++++ FE G++D+ L+ D+ TN +GFG+V F++E+
Sbjct: 74 RTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESED 128
>gi|378732360|gb|EHY58819.1| nucleolin, variant [Exophiala dermatitidis NIH/UT8656]
gi|378732361|gb|EHY58820.1| nucleolin [Exophiala dermatitidis NIH/UT8656]
Length = 1283
Score = 59.7 bits (143), Expect = 1e-06, Method: Composition-based stats.
Identities = 37/147 (25%), Positives = 71/147 (48%), Gaps = 26/147 (17%)
Query: 54 VTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKAL 113
+ ++ +PYGE+ +RF P R+ C YV FK + + A
Sbjct: 931 IRNLLRPYGEIINIRF---PSLQRNKRRRFC---------------YVEFKLPKEAQAAT 972
Query: 114 EMNGHVIDEHTIRVD-------KALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEID 166
E++G I+ I V + K++ ++F+G +PF+A E++ K+F G++D
Sbjct: 973 ELDGKEIEGLNIVVKISNPAARQPRAEKKNDGRTVFVGQLPFKATTEDIEKSFSRYGKLD 1032
Query: 167 NVRLIRD-QHTNIGKGFGYVNFKAEEE 192
++RL D ++ + +G ++ F +EE
Sbjct: 1033 HIRLPHDPKNKSRNRGIAFITFARQEE 1059
>gi|4505255|ref|NP_002433.1| RNA-binding protein Musashi homolog 1 [Homo sapiens]
gi|125630689|ref|NP_001074996.1| RNA-binding protein Musashi homolog 1 [Bos taurus]
gi|296213096|ref|XP_002753122.1| PREDICTED: RNA-binding protein Musashi homolog 1 [Callithrix
jacchus]
gi|51316193|sp|O43347.1|MSI1H_HUMAN RecName: Full=RNA-binding protein Musashi homolog 1;
Short=Musashi-1
gi|2769698|gb|AAB95636.1| similar to murine RNA-binding protein; 99% similar to D49654
(PID:g1434857) [Homo sapiens]
gi|3786320|dbj|BAA33962.1| Musashi [Homo sapiens]
gi|119618592|gb|EAW98186.1| musashi homolog 1 (Drosophila), isoform CRA_b [Homo sapiens]
gi|124358513|dbj|BAF45938.1| RNA-binding protein Musashi-1 [Bos taurus]
gi|147897997|gb|AAI40381.1| Musashi homolog 1 (Drosophila) [synthetic construct]
gi|148921740|gb|AAI46464.1| Musashi homolog 1 (Drosophila) [synthetic construct]
gi|208966796|dbj|BAG73412.1| musashi homolog 1 [synthetic construct]
Length = 362
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 59/115 (51%), Gaps = 5/115 (4%)
Query: 82 KACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVD-----KALTTTKS 136
K C+ M KR+ +V F + V+K L + H +D TI +A +
Sbjct: 47 KECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVT 106
Query: 137 NSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEE 191
+ IF+G + E++++ FE G++D+ L+ D+ TN +GFG+V F++E+
Sbjct: 107 RTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESED 161
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 57/137 (41%), Gaps = 50/137 (36%)
Query: 141 IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF------------- 187
+FIG + ++ +E LR+ F GE+ ++RD T +GFG+V F
Sbjct: 22 MFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS 81
Query: 188 -----------------KAEE--------------------EELRKAFESCGEIDNVRLI 210
+A+ E++++ FE G++D+ L+
Sbjct: 82 RHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLM 141
Query: 211 RDQHTNIGKGFGYVNFK 227
D+ TN +GFG+V F+
Sbjct: 142 FDKTTNRHRGFGFVTFE 158
>gi|270007747|gb|EFA04195.1| hypothetical protein TcasGA2_TC014444 [Tribolium castaneum]
Length = 522
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 60/115 (52%), Gaps = 15/115 (13%)
Query: 99 AYVRFKNLESVEKALEMNGH------VIDEHTIRVDKALTTTKSN--------SHSIFIG 144
AY+ FK+ ESV AL ++G +I +HT + + N +++G
Sbjct: 208 AYIEFKDPESVTLALGLSGQKLLGVPIIVQHTQAEKNRMGNSMPNLMPKNMTGPMRLYVG 267
Query: 145 NIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
++ F E+ LR FE G+IDN++LI D T KG+G++ F+ E+ +KA E
Sbjct: 268 SLHFNITEDMLRSIFEPFGKIDNIQLIMDPETGRSKGYGFIAFR-NCEDAKKALE 321
Score = 45.1 bits (105), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 29/45 (64%)
Query: 183 GYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK 227
G ++F E+ LR FE G+IDN++LI D T KG+G++ F+
Sbjct: 267 GSLHFNITEDMLRSIFEPFGKIDNIQLIMDPETGRSKGYGFIAFR 311
>gi|119618591|gb|EAW98185.1| musashi homolog 1 (Drosophila), isoform CRA_a [Homo sapiens]
Length = 351
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 59/115 (51%), Gaps = 5/115 (4%)
Query: 82 KACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVD-----KALTTTKS 136
K C+ M KR+ +V F + V+K L + H +D TI +A +
Sbjct: 47 KECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVT 106
Query: 137 NSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEE 191
+ IF+G + E++++ FE G++D+ L+ D+ TN +GFG+V F++E+
Sbjct: 107 RTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESED 161
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/137 (22%), Positives = 55/137 (40%), Gaps = 50/137 (36%)
Query: 141 IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEE--------- 191
+FIG + ++ +E LR+ F GE+ ++RD T +GFG+V F +
Sbjct: 22 MFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS 81
Query: 192 -----------------------------------------EELRKAFESCGEIDNVRLI 210
E++++ FE G++D+ L+
Sbjct: 82 RHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLM 141
Query: 211 RDQHTNIGKGFGYVNFK 227
D+ TN +GFG+V F+
Sbjct: 142 FDKTTNRHRGFGFVTFE 158
>gi|88682985|gb|AAI05387.1| HNRPDL protein [Bos taurus]
Length = 336
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/200 (24%), Positives = 86/200 (43%), Gaps = 30/200 (15%)
Query: 13 IPTQNRNLMSKLKVFLNIWKMALKLKMNPSLTKSKNHAL-----------SSVTSMFKPY 61
+P + M + + NI + A K+N S + + + +T +
Sbjct: 28 LPADHSAAMEDMNEYSNIEEFAEGSKINASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRF 87
Query: 62 GEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVID 121
GEV ++ PV R+ +V FK+ SV+K LE+ H +D
Sbjct: 88 GEVVDCTIKTDPVTG-----------------RSRGFGFVLFKDAASVDKVLELKEHKLD 130
Query: 122 EHTIRVDKALT-TTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGK 180
I +A K +F+G + + EE++++ F + GEI+N+ L D TN +
Sbjct: 131 GKLIDPKRAKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERR 190
Query: 181 GFGYVNFKAEEEELRKAFES 200
GF ++ + +EE ++K ES
Sbjct: 191 GFCFITY-TDEEPVKKLLES 209
>gi|74001737|ref|XP_858404.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D-like isoform
12 [Canis lupus familiaris]
Length = 420
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 85/199 (42%), Gaps = 30/199 (15%)
Query: 14 PTQNRNLMSKLKVFLNIWKMALKLKMNPSLTKSKNHAL-----------SSVTSMFKPYG 62
P N M + + NI + A K+N S + + + +T +G
Sbjct: 113 PADNSAAMEDMNEYSNIEEFAEGSKINASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFG 172
Query: 63 EVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDE 122
EV ++ PV R+ +V FK+ SV+K LE+ H +D
Sbjct: 173 EVVDCTIKTDPVTG-----------------RSRGFGFVLFKDAASVDKVLELKEHKLDG 215
Query: 123 HTIRVDKALT-TTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKG 181
I +A K +F+G + + EE++++ F + GEI+N+ L D TN +G
Sbjct: 216 KLIDPKRAKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRG 275
Query: 182 FGYVNFKAEEEELRKAFES 200
F ++ + +EE ++K ES
Sbjct: 276 FCFITY-TDEEPVKKLLES 293
>gi|410976792|ref|XP_003994797.1| PREDICTED: RNA-binding protein Musashi homolog 1 [Felis catus]
Length = 380
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 59/115 (51%), Gaps = 5/115 (4%)
Query: 82 KACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVD-----KALTTTKS 136
K C+ M KR+ +V F + V+K L + H +D TI +A +
Sbjct: 65 KECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVT 124
Query: 137 NSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEE 191
+ IF+G + E++++ FE G++D+ L+ D+ TN +GFG+V F++E+
Sbjct: 125 RTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESED 179
Score = 44.3 bits (103), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 30/135 (22%), Positives = 53/135 (39%), Gaps = 50/135 (37%)
Query: 143 IGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEE----------- 191
IG + ++ +E LR+ F GE+ ++RD T +GFG+V F +
Sbjct: 42 IGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRH 101
Query: 192 ---------------------------------------EELRKAFESCGEIDNVRLIRD 212
E++++ FE G++D+ L+ D
Sbjct: 102 ELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFD 161
Query: 213 QHTNIGKGFGYVNFK 227
+ TN +GFG+V F+
Sbjct: 162 KTTNRHRGFGFVTFE 176
>gi|393238200|gb|EJD45738.1| hypothetical protein AURDEDRAFT_137120 [Auricularia delicata
TFB-10046 SS5]
Length = 587
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 60/117 (51%), Gaps = 28/117 (23%)
Query: 116 NGHVIDEHTIRVDK---ALTTTKSNSH-SIFIGNIPFEAEEEELRKAFESC--------- 162
+G E TIRVD+ + + K+++ SIF+GN+ F A+EE+LR FES
Sbjct: 323 DGSTFMERTIRVDRVGAGVASAKTDARRSIFVGNLDFAAKEEDLRVFFESLLTTERGAPS 382
Query: 163 ---GE-------IDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRL 209
G+ + +VRL+RD T +GKGF YV F R+ + +D VRL
Sbjct: 383 APEGQEAEQTRWVTHVRLVRDAATQLGKGFAYVEFAD-----RECVDEVLALDQVRL 434
>gi|301790887|ref|XP_002930448.1| PREDICTED: RNA-binding protein Musashi homolog 1-like [Ailuropoda
melanoleuca]
Length = 360
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 59/115 (51%), Gaps = 5/115 (4%)
Query: 82 KACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVD-----KALTTTKS 136
K C+ M KR+ +V F + V+K L + H +D TI +A +
Sbjct: 45 KECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVT 104
Query: 137 NSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEE 191
+ IF+G + E++++ FE G++D+ L+ D+ TN +GFG+V F++E+
Sbjct: 105 RTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESED 159
>gi|327274637|ref|XP_003222083.1| PREDICTED: heterogeneous nuclear ribonucleoproteins A2/B1-like
[Anolis carolinensis]
Length = 349
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 54/111 (48%), Gaps = 7/111 (6%)
Query: 84 CIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALT---TTKSNSH- 139
C+ M KR+ +V F ++ V+ A+ H ID + +A+ + K +H
Sbjct: 46 CVVMRDPASKRSRGFGFVTFSSMAEVDSAMAARPHSIDGRVVEPKRAVAREESGKPGAHV 105
Query: 140 ---SIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 187
+F+G I + EE LR F G+ID + +I D+ + +GFG+V F
Sbjct: 106 TVKKLFVGGIKEDTEEHHLRDYFSEYGKIDTIEIITDRQSGKKRGFGFVTF 156
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/138 (23%), Positives = 52/138 (37%), Gaps = 52/138 (37%)
Query: 141 IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKA----------- 189
+FIG + FE EE LR +E G++ + ++RD + +GFG+V F +
Sbjct: 19 LFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDSAMAAR 78
Query: 190 -----------------------------------------EEEELRKAFESCGEIDNVR 208
EE LR F G+ID +
Sbjct: 79 PHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFSEYGKIDTIE 138
Query: 209 LIRDQHTNIGKGFGYVNF 226
+I D+ + +GFG+V F
Sbjct: 139 IITDRQSGKKRGFGFVTF 156
>gi|226499830|ref|NP_001140942.1| uncharacterized protein LOC100273020 [Zea mays]
gi|194701856|gb|ACF85012.1| unknown [Zea mays]
Length = 473
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 49/80 (61%), Gaps = 1/80 (1%)
Query: 121 DEHTIRVDKALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGK 180
+E K+ T + NS ++F+GN+ + +EE LR+ FES GE+ VR++ ++ T +
Sbjct: 207 EEPATNAKKSKTESADNSPNLFVGNLSWNVDEEWLRREFESFGELSGVRIMTERETGRSR 266
Query: 181 GFGYVNFKAEEEELRKAFES 200
GFGYV + A+ + A+E+
Sbjct: 267 GFGYVEY-ADASSAKAAYEA 285
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 64/147 (43%), Gaps = 22/147 (14%)
Query: 87 MNKVHEKRTNMNAYVRFKNLESVEKALEMNGHV-IDEHTIRVD--------------KAL 131
M + R+ YV + + S + A E +D TI +D KA
Sbjct: 257 MTERETGRSRGFGYVEYADASSAKAAYEAKKDTELDGRTINLDYAKPRDANSQAPREKAQ 316
Query: 132 TTTKS-------NSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGY 184
T +S S+++F+GN+ F +E +R+ FE G+I VRL D T KG+GY
Sbjct: 317 TRARSFGDQTSPESNTLFVGNLVFGVDENAVREVFEGQGQIQGVRLPTDAETGRPKGYGY 376
Query: 185 VNFKAEEEELRKAFESCGEIDNVRLIR 211
V F + +E + E G R IR
Sbjct: 377 VEFSSVDEARQALNELQGTDIGGRAIR 403
Score = 43.9 bits (102), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 30/44 (68%)
Query: 183 GYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 226
G +++ +EE LR+ FES GE+ VR++ ++ T +GFGYV +
Sbjct: 230 GNLSWNVDEEWLRREFESFGELSGVRIMTERETGRSRGFGYVEY 273
>gi|126314629|ref|XP_001373122.1| PREDICTED: nucleolin-like [Monodelphis domestica]
Length = 705
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 66/117 (56%), Gaps = 8/117 (6%)
Query: 99 AYVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKS-NSHSIFIGNIPFEAEEEELRK 157
YV F++ E +EKALE++G + ++++KA K ++ ++F+ N+P++ +EEL++
Sbjct: 336 GYVEFESAEDMEKALELSGSKVLGSEMKLEKAKENKKDRDARTLFVKNLPYKVTQEELKE 395
Query: 158 AFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE--SCGEIDNVRLIRD 212
FE EI RL+ + KG YV FK E ++ KA E EID LI D
Sbjct: 396 VFEDAIEI---RLVCTKD-GTPKGIAYVEFKT-EADVDKALEEKQGTEIDGRALILD 447
>gi|354497473|ref|XP_003510844.1| PREDICTED: RNA-binding protein Musashi homolog 1-like [Cricetulus
griseus]
Length = 510
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 59/115 (51%), Gaps = 5/115 (4%)
Query: 82 KACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVD-----KALTTTKS 136
K C+ M KR+ +V F + V+K L + H +D TI +A +
Sbjct: 195 KECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVT 254
Query: 137 NSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEE 191
+ IF+G + E++++ FE G++D+ L+ D+ TN +GFG+V F++E+
Sbjct: 255 RTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESED 309
>gi|291407048|ref|XP_002719860.1| PREDICTED: musashi 1 [Oryctolagus cuniculus]
Length = 568
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 59/115 (51%), Gaps = 5/115 (4%)
Query: 82 KACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVD-----KALTTTKS 136
K C+ M KR+ +V F + V+K L + H +D TI +A +
Sbjct: 253 KECLVMRDPLTKRSRGFGFVTFADQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVT 312
Query: 137 NSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEE 191
+ IF+G + E++++ FE G++D+ L+ D+ TN +GFG+V F++E+
Sbjct: 313 RTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESED 367
>gi|149240785|ref|XP_001526223.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
gi|146450346|gb|EDK44602.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
Length = 601
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 65/123 (52%), Gaps = 11/123 (8%)
Query: 99 AYVRFKNLESVEKAL-EMNGHVIDEHTIRVDKAL--------TTTKSNSHSIFIGNIPFE 149
A++ F E EKAL +NG ++ I+V+ A +T + S++IF+G++ E
Sbjct: 144 AFIEFNESEDAEKALNSLNGKDVNGSDIKVNWAYQSAAIAGGSTPEEPSYNIFVGDLSSE 203
Query: 150 AEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESC-GEIDNVR 208
+E L+KAF G + ++ D T+ +G+G+V F ++E+ A +S GE R
Sbjct: 204 VNDEALKKAFTKFGSLKQAHVMWDMQTSRSRGYGFVTF-GKQEDAENALQSMNGEWLGGR 262
Query: 209 LIR 211
IR
Sbjct: 263 AIR 265
>gi|440898654|gb|ELR50102.1| Heterogeneous nuclear ribonucleoprotein D-like protein, partial
[Bos grunniens mutus]
Length = 356
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/200 (24%), Positives = 86/200 (43%), Gaps = 30/200 (15%)
Query: 13 IPTQNRNLMSKLKVFLNIWKMALKLKMNPSLTKSKNHAL-----------SSVTSMFKPY 61
+P + M + + NI + A K+N S + + + +T +
Sbjct: 48 LPADHSAAMEDMNEYSNIEEFAEGSKINASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRF 107
Query: 62 GEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVID 121
GEV ++ PV R+ +V FK+ SV+K LE+ H +D
Sbjct: 108 GEVVDCTIKTDPVTG-----------------RSRGFGFVLFKDAASVDKVLELKEHKLD 150
Query: 122 EHTIRVDKALT-TTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGK 180
I +A K +F+G + + EE++++ F + GEI+N+ L D TN +
Sbjct: 151 GKLIDPKRAKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERR 210
Query: 181 GFGYVNFKAEEEELRKAFES 200
GF ++ + +EE ++K ES
Sbjct: 211 GFCFITY-TDEEPVKKLLES 229
>gi|58332792|ref|NP_001011470.1| musashi RNA-binding protein 1 [Xenopus (Silurana) tropicalis]
gi|147899394|ref|NP_001081302.1| nrp-1B [Xenopus laevis]
gi|214632|gb|AAA49920.1| pot. RNA-binding protein (nrp-1B); putative [Xenopus laevis]
gi|52221204|gb|AAH82667.1| LOC397764 protein [Xenopus laevis]
gi|56970642|gb|AAH88603.1| musashi homolog 1 [Xenopus (Silurana) tropicalis]
Length = 340
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 58/115 (50%), Gaps = 5/115 (4%)
Query: 82 KACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVD-----KALTTTKS 136
K C+ M KR+ +V F + V+K L + H +D TI +A +
Sbjct: 47 KECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVT 106
Query: 137 NSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEE 191
+ IF+G + E++++ FE G++D+ L+ D+ TN +GFG+V F+ E+
Sbjct: 107 RTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFEGED 161
Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 30/137 (21%), Positives = 55/137 (40%), Gaps = 50/137 (36%)
Query: 141 IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEE--------- 191
+FIG + ++ +E LR+ F G++ ++RD T +GFG+V F +
Sbjct: 22 MFIGGLSWQTTQEGLREYFSHFGDVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS 81
Query: 192 -----------------------------------------EELRKAFESCGEIDNVRLI 210
E++++ FE G++D+ L+
Sbjct: 82 RHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLM 141
Query: 211 RDQHTNIGKGFGYVNFK 227
D+ TN +GFG+V F+
Sbjct: 142 FDKTTNRHRGFGFVTFE 158
>gi|148233348|ref|NP_001084040.1| musashi RNA-binding protein 1 [Xenopus laevis]
gi|214630|gb|AAA49919.1| pot. RNA-binding protein (nrp-1B); putative [Xenopus laevis]
Length = 347
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 58/115 (50%), Gaps = 5/115 (4%)
Query: 82 KACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVD-----KALTTTKS 136
K C+ M KR+ +V F + V+K L + H +D TI +A +
Sbjct: 47 KECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVT 106
Query: 137 NSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEE 191
+ IF+G + E++++ FE G++D+ L+ D+ TN +GFG+V F+ E+
Sbjct: 107 RTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFEGED 161
Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 30/137 (21%), Positives = 55/137 (40%), Gaps = 50/137 (36%)
Query: 141 IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEE--------- 191
+FIG + ++ +E LR+ F G++ ++RD T +GFG+V F +
Sbjct: 22 MFIGGLSWQTTQEGLREYFSHFGDVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS 81
Query: 192 -----------------------------------------EELRKAFESCGEIDNVRLI 210
E++++ FE G++D+ L+
Sbjct: 82 RHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLM 141
Query: 211 RDQHTNIGKGFGYVNFK 227
D+ TN +GFG+V F+
Sbjct: 142 FDKTTNRHRGFGFVTFE 158
>gi|343427935|emb|CBQ71460.1| related to NSR1-nuclear localization sequence binding protein
[Sporisorium reilianum SRZ2]
Length = 459
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 48/94 (51%), Gaps = 18/94 (19%)
Query: 114 EMNGHVIDEHTIRVDKALTTTKSN----------------SHSIFIGNIPFEAEEEELRK 157
E G +D IR+D L+T K + S ++FIGN+ F+ E+++
Sbjct: 267 EGQGKEVDGRAIRLD--LSTPKGDVTENRAKKFNDQRSAPSSTLFIGNLSFDISEDDVWN 324
Query: 158 AFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEE 191
AF GE+ VRL +D + KGFGYV F A+E
Sbjct: 325 AFSEHGEVSGVRLPKDPDSGRPKGFGYVEFAAQE 358
Score = 41.6 bits (96), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 30/54 (55%)
Query: 183 GYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKVSFTTLSSI 236
G ++F E+++ AF GE+ VRL +D + KGFGYV F + +++
Sbjct: 311 GNLSFDISEDDVWNAFSEHGEVSGVRLPKDPDSGRPKGFGYVEFAAQESAQAAL 364
Score = 37.0 bits (84), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 37/73 (50%)
Query: 139 HSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAF 198
+ +++G + + + + L+ E GE+ + R+ D+ T +GFGYV+F +
Sbjct: 207 NQVWVGQLSWNVDNDWLKSEMEVFGEVTSARVQLDRTTGKSRGFGYVDFATAAAAKKAFE 266
Query: 199 ESCGEIDNVRLIR 211
E G+ + R IR
Sbjct: 267 EGQGKEVDGRAIR 279
>gi|119618593|gb|EAW98187.1| musashi homolog 1 (Drosophila), isoform CRA_c [Homo sapiens]
Length = 343
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 59/115 (51%), Gaps = 5/115 (4%)
Query: 82 KACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVD-----KALTTTKS 136
K C+ M KR+ +V F + V+K L + H +D TI +A +
Sbjct: 47 KECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVT 106
Query: 137 NSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEE 191
+ IF+G + E++++ FE G++D+ L+ D+ TN +GFG+V F++E+
Sbjct: 107 RTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESED 161
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/137 (22%), Positives = 55/137 (40%), Gaps = 50/137 (36%)
Query: 141 IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEE--------- 191
+FIG + ++ +E LR+ F GE+ ++RD T +GFG+V F +
Sbjct: 22 MFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS 81
Query: 192 -----------------------------------------EELRKAFESCGEIDNVRLI 210
E++++ FE G++D+ L+
Sbjct: 82 RHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLM 141
Query: 211 RDQHTNIGKGFGYVNFK 227
D+ TN +GFG+V F+
Sbjct: 142 FDKTTNRHRGFGFVTFE 158
>gi|358372752|dbj|GAA89354.1| RNA binding protein [Aspergillus kawachii IFO 4308]
Length = 519
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 59/207 (28%), Positives = 96/207 (46%), Gaps = 17/207 (8%)
Query: 26 VFL-NIWKMALKLK-MNPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADIT-LPRK 82
VFL N+ A+K K +L K LS++ P+ +VE++RFRS A +P++
Sbjct: 192 VFLGNVSSEAIKSKSAKKTLLKHLGSFLSTLPESTGPH-KVESIRFRSTAFASGGGVPKR 250
Query: 83 ACIKMNKVHEKRTN-MNAYVRFKNLESVEKA-LEMNGHVIDEHTIRVDK-ALTTTKSNSH 139
A +V + T NAY + +++ KA +NG VI + +RVD A +
Sbjct: 251 ASFAKQEVLDDTTPCTNAYAVYSTVQAARKAPAALNGTVILDRHLRVDSVAHPAPIDHKR 310
Query: 140 SIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
+F+GN+ F E D + + ++ +G + F A K
Sbjct: 311 CVFVGNLDFVDNE---------VKPDDEQKKKKRAPADVEEGL-WRTFNAHTGRSNKDKP 360
Query: 200 SCGEIDNVRLIRDQHTNIGKGFGYVNF 226
G +++VR++RD T +GKGF YV F
Sbjct: 361 KNGNVESVRVVRDSLTRVGKGFAYVQF 387
>gi|119195917|ref|XP_001248562.1| hypothetical protein CIMG_02333 [Coccidioides immitis RS]
gi|392862234|gb|EAS37139.2| hypothetical protein CIMG_02333 [Coccidioides immitis RS]
Length = 496
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 58/126 (46%), Gaps = 22/126 (17%)
Query: 94 RTNMNAYVRFKNLESVEKALEMNGHV-IDEHTIRVD-------------KALTTTKS--- 136
R+ YV F N E KA + ID TI +D +A + KS
Sbjct: 301 RSRGFGYVEFTNAEDASKAFKAKKDAEIDGRTINLDFANARQNAGGARDRAQSRAKSFGD 360
Query: 137 ----NSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEE 192
S ++FIGNI F A+E +++ F S G I +RL D + KGFGYV F + +
Sbjct: 361 QTSPESDTLFIGNISFNADENAVQETFSSHGSILGIRLPTDPESGRPKGFGYVQF-SSVD 419
Query: 193 ELRKAF 198
E R AF
Sbjct: 420 EARSAF 425
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 53/102 (51%), Gaps = 16/102 (15%)
Query: 136 SNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELR 195
+ S ++F+GN+ + +EE LR FES GE+ VR++ D+ + +GFGYV F E+
Sbjct: 259 AESSNLFVGNLSWNVDEEWLRSEFESFGELSGVRIVTDRDSGRSRGFGYVEF-TNAEDAS 317
Query: 196 KAFES--CGEID-------------NVRLIRDQHTNIGKGFG 222
KAF++ EID N RD+ + K FG
Sbjct: 318 KAFKAKKDAEIDGRTINLDFANARQNAGGARDRAQSRAKSFG 359
Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 29/44 (65%)
Query: 183 GYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 226
G +++ +EE LR FES GE+ VR++ D+ + +GFGYV F
Sbjct: 267 GNLSWNVDEEWLRSEFESFGELSGVRIVTDRDSGRSRGFGYVEF 310
>gi|395816795|ref|XP_003781875.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D-like [Otolemur
garnettii]
Length = 350
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 62/118 (52%), Gaps = 2/118 (1%)
Query: 84 CIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALT-TTKSNSHSIF 142
CI R+ +V FK+ SV+K LE+ H +D I +A K+ +F
Sbjct: 111 CIIKTDPVSGRSRGFGFVLFKDAASVDKVLELKEHKLDGKLIDPQRAKPLKEKAPPKKVF 170
Query: 143 IGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFES 200
+G + + +E+++ F + GEI+N+ L RD+ TN +GF +V + E E ++K ES
Sbjct: 171 VGGLSPDTSKEQIKDYFGAFGEIENIELPRDRKTNERRGFCFVTY-TEGEPVKKLLES 227
>gi|303321732|ref|XP_003070860.1| RNA recognition motif containing protein [Coccidioides posadasii
C735 delta SOWgp]
gi|240110557|gb|EER28715.1| RNA recognition motif containing protein [Coccidioides posadasii
C735 delta SOWgp]
gi|320040347|gb|EFW22280.1| hypothetical protein CPSG_00179 [Coccidioides posadasii str.
Silveira]
Length = 498
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 58/126 (46%), Gaps = 22/126 (17%)
Query: 94 RTNMNAYVRFKNLESVEKALEMNGHV-IDEHTIRVD-------------KALTTTKS--- 136
R+ YV F N E KA + ID TI +D +A + KS
Sbjct: 303 RSRGFGYVEFTNAEDASKAFKAKKDAEIDGRTINLDFANARQNAGGARDRAQSRAKSFGD 362
Query: 137 ----NSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEE 192
S ++FIGNI F A+E +++ F S G I +RL D + KGFGYV F + +
Sbjct: 363 QTSPESDTLFIGNISFNADENAVQETFSSHGSILGIRLPTDPESGRPKGFGYVQF-SSVD 421
Query: 193 ELRKAF 198
E R AF
Sbjct: 422 EARSAF 427
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 53/102 (51%), Gaps = 16/102 (15%)
Query: 136 SNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELR 195
+ S ++F+GN+ + +EE LR FES GE+ VR++ D+ + +GFGYV F E+
Sbjct: 261 AESSNLFVGNLSWNVDEEWLRSEFESFGELSGVRIVTDRDSGRSRGFGYVEF-TNAEDAS 319
Query: 196 KAFES--CGEID-------------NVRLIRDQHTNIGKGFG 222
KAF++ EID N RD+ + K FG
Sbjct: 320 KAFKAKKDAEIDGRTINLDFANARQNAGGARDRAQSRAKSFG 361
Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 29/44 (65%)
Query: 183 GYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 226
G +++ +EE LR FES GE+ VR++ D+ + +GFGYV F
Sbjct: 269 GNLSWNVDEEWLRSEFESFGELSGVRIVTDRDSGRSRGFGYVEF 312
>gi|365986018|ref|XP_003669841.1| hypothetical protein NDAI_0D02840 [Naumovozyma dairenensis CBS 421]
gi|343768610|emb|CCD24598.1| hypothetical protein NDAI_0D02840 [Naumovozyma dairenensis CBS 421]
Length = 426
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/136 (33%), Positives = 68/136 (50%), Gaps = 21/136 (15%)
Query: 94 RTNMNAYVRFKNLESVEKAL-EMNGHVIDEHTIRVDKALTTTKS---------------- 136
R+ YV F++ EKA+ EM G ID I VD ++T+K
Sbjct: 210 RSRGYGYVDFEDKSYAEKAIQEMQGKEIDGRPINVD--MSTSKPAGGNDRAKKFGDVPSE 267
Query: 137 NSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRK 196
S ++F+GN+ F A+++ + + F GEI +VR+ T KGFGYV F + E+ +K
Sbjct: 268 PSDTLFLGNLSFNADKDNIYETFSKYGEIISVRIPTHPETEQPKGFGYVQF-SNIEDAKK 326
Query: 197 AFESC-GEIDNVRLIR 211
A E GE + R +R
Sbjct: 327 ALEGLQGEYIDNRAVR 342
Score = 43.5 bits (101), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 35/56 (62%)
Query: 133 TTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK 188
T+ +IF+G + + ++E L+K FE G + R+I ++ T+ +G+GYV+F+
Sbjct: 165 TSGGEPATIFVGRLSWSIDDEWLKKEFEHIGGVVGARVIYERGTDRSRGYGYVDFE 220
Score = 36.6 bits (83), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 30/45 (66%)
Query: 183 GYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK 227
G +++ ++E L+K FE G + R+I ++ T+ +G+GYV+F+
Sbjct: 176 GRLSWSIDDEWLKKEFEHIGGVVGARVIYERGTDRSRGYGYVDFE 220
>gi|255713222|ref|XP_002552893.1| KLTH0D03916p [Lachancea thermotolerans]
gi|238934273|emb|CAR22455.1| KLTH0D03916p [Lachancea thermotolerans CBS 6340]
Length = 505
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 68/137 (49%), Gaps = 22/137 (16%)
Query: 94 RTNMNAYVRFKNLESVEKAL-EMNGHVIDEHTIRVDKALTTTKSN--------------- 137
R+ YV F+N EKA+ EM+G ID I D + + N
Sbjct: 295 RSRGYGYVDFENKFYAEKAVKEMHGKEIDGRPINCDMSTSKPAGNPRNDRAKQFGDTPSQ 354
Query: 138 -SHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRK 196
S ++F+GN+ F A+ + + + F GE+ +VRL TN KGFGYV + + +E +K
Sbjct: 355 PSDTLFLGNLSFNADRDNIFETFAEHGEVVSVRLPTHPETNQPKGFGYVQY-SSVDEAQK 413
Query: 197 AFESCGE--IDN--VRL 209
AFE+ IDN VRL
Sbjct: 414 AFEALQGHYIDNRPVRL 430
Score = 44.3 bits (103), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 36/59 (61%)
Query: 129 KALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 187
KA T + +IF+G + + ++E L+ FE G + + R+I ++ T+ +G+GYV+F
Sbjct: 246 KAKTESNGEPATIFVGRLSWSVDDEWLKTEFEPIGGVISARVIMERGTDRSRGYGYVDF 304
Score = 36.6 bits (83), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 31/48 (64%)
Query: 183 GYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKVSF 230
G +++ ++E L+ FE G + + R+I ++ T+ +G+GYV+F+ F
Sbjct: 261 GRLSWSVDDEWLKTEFEPIGGVISARVIMERGTDRSRGYGYVDFENKF 308
>gi|350592544|ref|XP_003359176.2| PREDICTED: RNA-binding protein Musashi homolog 1-like, partial [Sus
scrofa]
Length = 411
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 59/115 (51%), Gaps = 5/115 (4%)
Query: 82 KACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVD-----KALTTTKS 136
K C+ M KR+ +V F + V+K L + H +D TI +A +
Sbjct: 96 KECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVT 155
Query: 137 NSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEE 191
+ IF+G + E++++ FE G++D+ L+ D+ TN +GFG+V F++E+
Sbjct: 156 RTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESED 210
>gi|171451950|dbj|BAG15903.1| musashi [Dugesia japonica]
Length = 473
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 56/114 (49%), Gaps = 11/114 (9%)
Query: 87 MNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKS---------N 137
M + KR+ +V F + V K L+ H++D ++D L KS
Sbjct: 75 MRDIVHKRSRGFGFVTFTDYNGVIKVLKQENHILDSK--KIDPKLAVPKSICQPEKISAR 132
Query: 138 SHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEE 191
+ IFIG I + EE+R+ F GE++N L+ D+ TN +GFG+V F E+
Sbjct: 133 TKKIFIGGIATSSTVEEIRQYFNRYGEVENCELMMDKATNRHRGFGFVTFLDED 186
>gi|426247780|ref|XP_004017654.1| PREDICTED: RNA-binding protein Musashi homolog 1 [Ovis aries]
Length = 325
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 59/115 (51%), Gaps = 5/115 (4%)
Query: 82 KACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVD-----KALTTTKS 136
K C+ M KR+ +V F + V+K L + H +D TI +A +
Sbjct: 37 KECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVT 96
Query: 137 NSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEE 191
+ IF+G + E++++ FE G++D+ L+ D+ TN +GFG+V F++E+
Sbjct: 97 RTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESED 151
>gi|443899731|dbj|GAC77060.1| nuclear localization sequence binding protein, partial [Pseudozyma
antarctica T-34]
Length = 400
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 48/94 (51%), Gaps = 18/94 (19%)
Query: 114 EMNGHVIDEHTIRVDKALTTTKSN----------------SHSIFIGNIPFEAEEEELRK 157
E G +D IR+D L+T K + S ++FIGN+ F+ E+++
Sbjct: 263 EGQGKEVDGRAIRID--LSTPKGDVTDNRAKKFNDQRSAPSSTLFIGNLSFDISEDDVWN 320
Query: 158 AFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEE 191
AF GE+ VRL +D + KGFGYV F A+E
Sbjct: 321 AFSEHGEVSGVRLPKDPDSGRPKGFGYVEFAAQE 354
Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 30/54 (55%)
Query: 183 GYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKVSFTTLSSI 236
G ++F E+++ AF GE+ VRL +D + KGFGYV F + ++I
Sbjct: 307 GNLSFDISEDDVWNAFSEHGEVSGVRLPKDPDSGRPKGFGYVEFAAQESAQAAI 360
Score = 40.0 bits (92), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 39/74 (52%)
Query: 138 SHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKA 197
++ I++G + + + E L+ E+ GE+ + R+ D+ T +GFGYV+F +
Sbjct: 202 TNQIWVGQLSWNVDNEWLKSEMEAFGEVTSARVQLDRTTGKSRGFGYVDFATAAAAKKAF 261
Query: 198 FESCGEIDNVRLIR 211
E G+ + R IR
Sbjct: 262 EEGQGKEVDGRAIR 275
>gi|194043009|ref|XP_001928191.1| PREDICTED: probable RNA-binding protein 19 [Sus scrofa]
Length = 967
Score = 58.9 bits (141), Expect = 2e-06, Method: Composition-based stats.
Identities = 36/118 (30%), Positives = 61/118 (51%), Gaps = 17/118 (14%)
Query: 99 AYVRFKNLESVEKAL-EMNGHVIDEHTIRVD--------------KALTTTKSNSHSIFI 143
+V +K E +KAL ++ GHV+D H + V K K + I +
Sbjct: 784 GFVEYKKPEQAQKALKQLQGHVVDGHKLEVRISERATKPAPTATRKKQVARKQTTSKILV 843
Query: 144 GNIPFEAEEEELRKAFESCGEIDNVRLIRDQH-TNIGKGFGYVNFKAEEEELRKAFES 200
NIPF+A+ E+R+ F + GE+ VRL + T +GFG+V+F +++ ++AF +
Sbjct: 844 RNIPFQADSREIRELFSTFGELKTVRLPKKMTGTGTHRGFGFVDFFTKQDA-KRAFNA 900
Score = 44.3 bits (103), Expect = 0.041, Method: Composition-based stats.
Identities = 46/189 (24%), Positives = 75/189 (39%), Gaps = 36/189 (19%)
Query: 66 TVRFRSVP-------VADITLPRKACIKMNKVHEKRTNMNAYV--RFKNLESVEKALEMN 116
TV+ R P V + P K + + V N YV F + E V+KAL+ N
Sbjct: 302 TVKLRGAPFNVTEKNVMEFLAPLKP-VAIRIVRNAHGNKTGYVFVDFSSEEEVKKALQCN 360
Query: 117 GHVIDEHTIRV--DKALTTTKS------------------------NSHSIFIGNIPFEA 150
+ I V +K++ T K+ +S +F+ N+P+ +
Sbjct: 361 REYMGGRYIEVFREKSIPTAKAPPKNSTKAWQGRTLGEHEEEEDLADSGRLFVRNLPYTS 420
Query: 151 EEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLI 210
EE+L K F G + + D T KGF +V F E ++ E G++ R++
Sbjct: 421 SEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRML 480
Query: 211 RDQHTNIGK 219
+ I K
Sbjct: 481 HVLPSTIKK 489
>gi|54647597|gb|AAH84959.1| Msi1h protein [Xenopus laevis]
Length = 321
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 58/115 (50%), Gaps = 5/115 (4%)
Query: 82 KACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVD-----KALTTTKS 136
K C+ M KR+ +V F + V+K L + H +D TI +A +
Sbjct: 47 KECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVT 106
Query: 137 NSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEE 191
+ IF+G + E++++ FE G++D+ L+ D+ TN +GFG+V F+ E+
Sbjct: 107 RTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFEGED 161
Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 30/137 (21%), Positives = 55/137 (40%), Gaps = 50/137 (36%)
Query: 141 IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEE--------- 191
+FIG + ++ +E LR+ F G++ ++RD T +GFG+V F +
Sbjct: 22 MFIGGLSWQTTQEGLREYFSHFGDVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS 81
Query: 192 -----------------------------------------EELRKAFESCGEIDNVRLI 210
E++++ FE G++D+ L+
Sbjct: 82 RHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLM 141
Query: 211 RDQHTNIGKGFGYVNFK 227
D+ TN +GFG+V F+
Sbjct: 142 FDKTTNRHRGFGFVTFE 158
>gi|327282602|ref|XP_003226031.1| PREDICTED: RNA-binding protein Musashi homolog 1-like isoform 1
[Anolis carolinensis]
Length = 352
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 59/115 (51%), Gaps = 5/115 (4%)
Query: 82 KACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVD-----KALTTTKS 136
K C+ M KR+ +V F + V+K L + H +D TI +A +
Sbjct: 48 KECLVMRDPLTKRSRGFGFVTFVDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVT 107
Query: 137 NSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEE 191
+ IF+G + E++++ FE G++D+ L+ D+ TN +GFG+V F++E+
Sbjct: 108 RTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESED 162
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/154 (22%), Positives = 61/154 (39%), Gaps = 53/154 (34%)
Query: 127 VDKALTTTKSNSHS---IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFG 183
L + + H +FIG + ++ +E LR+ F GE+ ++RD T +GFG
Sbjct: 6 AQPGLASPPDSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFG 65
Query: 184 YVNF------------------------------KAEE--------------------EE 193
+V F +A+ E+
Sbjct: 66 FVTFVDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSVNTTVED 125
Query: 194 LRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK 227
+++ FE G++D+ L+ D+ TN +GFG+V F+
Sbjct: 126 VKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFE 159
>gi|426247328|ref|XP_004017438.1| PREDICTED: probable RNA-binding protein 19 [Ovis aries]
Length = 916
Score = 58.9 bits (141), Expect = 2e-06, Method: Composition-based stats.
Identities = 37/118 (31%), Positives = 63/118 (53%), Gaps = 17/118 (14%)
Query: 99 AYVRFKNLESVEKAL-EMNGHVIDEHTIRV-------DKALTTT-------KSNSHSIFI 143
+V ++ E +KAL ++ GHV+D H + V ALT K + I +
Sbjct: 733 GFVEYRKPEQAQKALKQLQGHVVDGHKLEVRISERATKPALTAARKKQAPRKQTTSKILV 792
Query: 144 GNIPFEAEEEELRKAFESCGEIDNVRLIRD-QHTNIGKGFGYVNFKAEEEELRKAFES 200
NIPF+A+ E+R+ F + GE+ VRL + T +GFG+V+F +++ ++AF +
Sbjct: 793 RNIPFQADSHEIRELFSTFGELKTVRLPKKVTGTGTHRGFGFVDFLTKQDA-KRAFNA 849
Score = 41.6 bits (96), Expect = 0.31, Method: Composition-based stats.
Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 6/94 (6%)
Query: 117 GHVIDEHTIRVDKALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHT 176
G + EH D A +S +F+ N+P+ + EE+L K F G + + D T
Sbjct: 344 GRTLGEHEEEEDLA------DSGRLFVRNLPYTSSEEDLEKLFSRYGPLSELHYPIDSLT 397
Query: 177 NIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLI 210
KGF +V F E ++ E G++ R++
Sbjct: 398 KKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRML 431
>gi|363751975|ref|XP_003646204.1| hypothetical protein Ecym_4324 [Eremothecium cymbalariae
DBVPG#7215]
gi|356889839|gb|AET39387.1| hypothetical protein Ecym_4324 [Eremothecium cymbalariae
DBVPG#7215]
Length = 331
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 43/63 (68%), Gaps = 1/63 (1%)
Query: 140 SIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
+IF+G +P+E +E EL+K F G+I+ VR++RD+ TN KG+ +V FK + E RKA+
Sbjct: 108 TIFVGRLPYEVDELELQKQFIKFGDIERVRIVRDKLTNEPKGYAFVLFK-DTEGSRKAYR 166
Query: 200 SCG 202
G
Sbjct: 167 EIG 169
Score = 42.0 bits (97), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 31/45 (68%)
Query: 183 GYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK 227
G + ++ +E EL+K F G+I+ VR++RD+ TN KG+ +V FK
Sbjct: 112 GRLPYEVDELELQKQFIKFGDIERVRIVRDKLTNEPKGYAFVLFK 156
>gi|158523286|sp|Q99729.2|ROAA_HUMAN RecName: Full=Heterogeneous nuclear ribonucleoprotein A/B;
Short=hnRNP A/B; AltName: Full=APOBEC1-binding protein
1; Short=ABBP-1
Length = 332
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 61/116 (52%), Gaps = 3/116 (2%)
Query: 85 IKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKSNSHSIFIG 144
IKM+ + R+ ++ FK+ SVEK L+ H +D I KA+ K IF+G
Sbjct: 100 IKMD-PNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKKAMAMKKDPVKKIFVG 158
Query: 145 NI-PFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
+ P EE++R+ F GEI+ + L D N +GF ++ FK EEE ++K E
Sbjct: 159 GLNPESPTEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFK-EEEPVKKVLE 213
>gi|75074832|sp|Q9TTV2.1|ROA2_SAGOE RecName: Full=Heterogeneous nuclear ribonucleoproteins A2/B1;
Short=hnRNP A2/B1; AltName: Full=Vitamin D response
element-binding protein 2; Short=VDRE-BP 2
gi|6273351|gb|AAF06330.1|AF192348_1 vitamin D response element binding protein [Saguinus oedipus]
Length = 341
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 54/111 (48%), Gaps = 7/111 (6%)
Query: 84 CIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALT---TTKSNSH- 139
C+ M KR+ +V F ++ V+ A+ H ID + +A+ + K +H
Sbjct: 38 CVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHV 97
Query: 140 ---SIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 187
+F+G I + EE LR F G+ID + +I D+ + +GFG+V F
Sbjct: 98 TVKKLFVGGIKEDTEEHHLRDYFAEYGKIDTIEIITDRQSGKKRGFGFVTF 148
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/138 (23%), Positives = 52/138 (37%), Gaps = 52/138 (37%)
Query: 141 IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKA----------- 189
+FIG + F+ EE LR +E G++ + ++RD + +GFG+V F +
Sbjct: 11 LFIGGLSFQTTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAAR 70
Query: 190 -----------------------------------------EEEELRKAFESCGEIDNVR 208
EE LR F G+ID +
Sbjct: 71 PHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFAEYGKIDTIE 130
Query: 209 LIRDQHTNIGKGFGYVNF 226
+I D+ + +GFG+V F
Sbjct: 131 IITDRQSGKKRGFGFVTF 148
>gi|350633199|gb|EHA21565.1| hypothetical protein ASPNIDRAFT_214483 [Aspergillus niger ATCC
1015]
Length = 515
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 58/207 (28%), Positives = 97/207 (46%), Gaps = 17/207 (8%)
Query: 26 VFL-NIWKMALKLK-MNPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADIT-LPRK 82
VFL N+ A+K K +L K LS++ P+ +VE++RFRS A +P++
Sbjct: 188 VFLGNVSSEAIKSKSAKKTLLKHLASFLSTLPESTGPH-KVESIRFRSTAFASGGGVPKR 246
Query: 83 ACIKMNKVHEKRTN-MNAYVRFKNLESVEKA-LEMNGHVIDEHTIRVDK-ALTTTKSNSH 139
A +V + T NAY + +++ KA +NG V+ + +RVD A + +
Sbjct: 247 ASFAKQEVLDDTTPCTNAYAVYSTVQAARKAPAALNGTVVLDRHLRVDSVAHPSPIDHKR 306
Query: 140 SIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
+F+GN+ F E D + + ++ +G + F A K
Sbjct: 307 CVFVGNLDFVDNE---------VKPDDEQKKKKRAPADVEEGL-WRTFNAHTGRSNKEKP 356
Query: 200 SCGEIDNVRLIRDQHTNIGKGFGYVNF 226
G +++VR++RD T +GKGF YV F
Sbjct: 357 KNGNVESVRVVRDSLTRVGKGFAYVQF 383
>gi|344284839|ref|XP_003414172.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D isoform 2
[Loxodonta africana]
Length = 363
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 59/108 (54%), Gaps = 2/108 (1%)
Query: 94 RTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALT-TTKSNSHSIFIGNIPFEAEE 152
R+ +V FK+ SV+K LE+ H +D I +A K +F+G + + E
Sbjct: 187 RSRGFGFVLFKDAASVDKVLELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDTSE 246
Query: 153 EELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFES 200
E++++ F + GEI+N+ L D TN +GF ++ + +EE ++K ES
Sbjct: 247 EQIKEYFGAFGEIENIELPMDTKTNERRGFCFITY-TDEEPVKKLLES 293
>gi|427798067|gb|JAA64485.1| Putative mrna cleavage and polyadenylation factor i complex subunit
rna15, partial [Rhipicephalus pulchellus]
Length = 377
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 41/68 (60%)
Query: 127 VDKALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVN 186
V L+ + + S+F+GNIP+EA EE+L+ F G + + RL+ D+ T KG+G+
Sbjct: 4 VQGVLSAAERSVRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCE 63
Query: 187 FKAEEEEL 194
+K +E L
Sbjct: 64 YKDQETAL 71
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 32/54 (59%)
Query: 183 GYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKVSFTTLSSI 236
G + ++A EE+L+ F G + + RL+ D+ T KG+G+ +K T LS++
Sbjct: 21 GNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYKDQETALSAM 74
>gi|213404256|ref|XP_002172900.1| RNA-binding protein rnp24 [Schizosaccharomyces japonicus yFS275]
gi|212000947|gb|EEB06607.1| RNA-binding protein rnp24 [Schizosaccharomyces japonicus yFS275]
Length = 414
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 19/122 (15%)
Query: 85 IKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVID----------EHTIRVDK----- 129
+ MNK+ + + AYV F + ES+ AL + H ++ ++T R DK
Sbjct: 193 MPMNKIRKNQNRGFAYVDFDSEESLGLALACSEHALNGRNVLIKSSTDYTGRPDKVTVSK 252
Query: 130 ----ALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYV 185
A S ++F+GN+PF+A +E L + F G I VRL+ + T KGFG+V
Sbjct: 253 TEKIAARPANPPSSTLFVGNLPFDATKETLSEYFGDAGRIRRVRLMTFEDTGKCKGFGFV 312
Query: 186 NF 187
+F
Sbjct: 313 DF 314
>gi|255934068|ref|XP_002558315.1| Pc12g15120 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211582934|emb|CAP81139.1| Pc12g15120 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 496
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 65/121 (53%), Gaps = 9/121 (7%)
Query: 99 AYVRFKNLESVEKALE-MNGHVIDEHTIRVDKAL---TTTK---SNSHSIFIGNIPFEAE 151
+V F + + E+A++ +NG I + IRV+ A +T+K SN IF+G++ E
Sbjct: 136 GFVEFDDPGAAERAMQTLNGRRIHQSEIRVNWAYQSNSTSKEDTSNHFHIFVGDLSNEVN 195
Query: 152 EEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESC-GEIDNVRLI 210
+E L +AF + G + R++ D T +G+G+V F+ + E KA S GE R I
Sbjct: 196 DEVLTQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFR-DRAEADKALNSMDGEWLGSRAI 254
Query: 211 R 211
R
Sbjct: 255 R 255
>gi|355694953|gb|AER99843.1| heteroproteinous nuclear ribonucleoprotein D-like protein [Mustela
putorius furo]
Length = 294
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 85/199 (42%), Gaps = 30/199 (15%)
Query: 14 PTQNRNLMSKLKVFLNIWKMALKLKMNPSLTKSKNHAL-----------SSVTSMFKPYG 62
P + M + + NI + A K+N S + + + +T +G
Sbjct: 58 PADSAAAMEDVSEYSNIEEFAEGSKINASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFG 117
Query: 63 EVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDE 122
EV ++ PV R+ +V FK+ SV+K LE+ H +D
Sbjct: 118 EVVDCTIKTDPVTG-----------------RSRGFGFVLFKDAASVDKVLELKEHKLDG 160
Query: 123 HTIRVDKALT-TTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKG 181
I +A K +F+G + + EE++++ F + GEI+N+ L D TN +G
Sbjct: 161 KLIDPKRAKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRG 220
Query: 182 FGYVNFKAEEEELRKAFES 200
F ++ + +EE ++K ES
Sbjct: 221 FCFITY-TDEEPVKKLLES 238
>gi|328769593|gb|EGF79636.1| hypothetical protein BATDEDRAFT_19718 [Batrachochytrium
dendrobatidis JAM81]
Length = 431
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 62/117 (52%), Gaps = 19/117 (16%)
Query: 99 AYVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTK----------------SNSHSIF 142
YV F++ +++ A+ + G +D IRVD ++T K + + ++F
Sbjct: 227 GYVTFESADALTAAMALTGTELDGREIRVD--VSTPKPPRDGNRQGRKEAPQSAPTTTLF 284
Query: 143 IGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
+GN+ F E+E+R++F G++ +VR D+ T KGFGYV + + E +KA E
Sbjct: 285 LGNLSFNVTEDEIRESFSQYGQLVSVRFPTDRDTGAFKGFGYVEY-GDVETAQKAVE 340
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 40/71 (56%)
Query: 121 DEHTIRVDKALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGK 180
DE K T + + ++F+GN+ + +EE L F CG +++ R+I D+ T K
Sbjct: 165 DEAAEEPTKKPKTEEPVNSTVFVGNLSWNVDEEMLAATFADCGTVESARIITDKETGRAK 224
Query: 181 GFGYVNFKAEE 191
GFGYV F++ +
Sbjct: 225 GFGYVTFESAD 235
Score = 45.4 bits (106), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 27/44 (61%)
Query: 183 GYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 226
G +++ +EE L F CG +++ R+I D+ T KGFGYV F
Sbjct: 188 GNLSWNVDEEMLAATFADCGTVESARIITDKETGRAKGFGYVTF 231
>gi|332801090|ref|NP_001193929.1| heterogeneous nuclear ribonucleoprotein D-like isoform b [Homo
sapiens]
gi|114593993|ref|XP_001142118.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D-like isoform 1
[Pan troglodytes]
gi|397524665|ref|XP_003832309.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D-like isoform 3
[Pan paniscus]
gi|119626295|gb|EAX05890.1| heterogeneous nuclear ribonucleoprotein D-like, isoform CRA_b [Homo
sapiens]
gi|410248288|gb|JAA12111.1| heterogeneous nuclear ribonucleoprotein D-like [Pan troglodytes]
gi|410296198|gb|JAA26699.1| heterogeneous nuclear ribonucleoprotein D-like [Pan troglodytes]
Length = 363
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 59/108 (54%), Gaps = 2/108 (1%)
Query: 94 RTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALT-TTKSNSHSIFIGNIPFEAEE 152
R+ +V FK+ SV+K LE+ H +D I +A K +F+G + + E
Sbjct: 187 RSRGFGFVLFKDAASVDKVLELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDTSE 246
Query: 153 EELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFES 200
E++++ F + GEI+N+ L D TN +GF ++ + +EE ++K ES
Sbjct: 247 EQIKEYFGAFGEIENIELPMDTKTNERRGFCFITY-TDEEPVKKLLES 293
>gi|344249205|gb|EGW05309.1| RNA-binding protein Musashi-like 1 [Cricetulus griseus]
Length = 338
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 59/115 (51%), Gaps = 5/115 (4%)
Query: 82 KACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVD-----KALTTTKS 136
K C+ M KR+ +V F + V+K L + H +D TI +A +
Sbjct: 14 KECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVT 73
Query: 137 NSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEE 191
+ IF+G + E++++ FE G++D+ L+ D+ TN +GFG+V F++E+
Sbjct: 74 RTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESED 128
>gi|327282604|ref|XP_003226032.1| PREDICTED: RNA-binding protein Musashi homolog 1-like isoform 2
[Anolis carolinensis]
Length = 325
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 59/115 (51%), Gaps = 5/115 (4%)
Query: 82 KACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVD-----KALTTTKS 136
K C+ M KR+ +V F + V+K L + H +D TI +A +
Sbjct: 48 KECLVMRDPLTKRSRGFGFVTFVDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVT 107
Query: 137 NSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEE 191
+ IF+G + E++++ FE G++D+ L+ D+ TN +GFG+V F++E+
Sbjct: 108 RTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESED 162
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/154 (22%), Positives = 61/154 (39%), Gaps = 53/154 (34%)
Query: 127 VDKALTTTKSNSHS---IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFG 183
L + + H +FIG + ++ +E LR+ F GE+ ++RD T +GFG
Sbjct: 6 AQPGLASPPDSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFG 65
Query: 184 YVNF------------------------------KAEE--------------------EE 193
+V F +A+ E+
Sbjct: 66 FVTFVDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSVNTTVED 125
Query: 194 LRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK 227
+++ FE G++D+ L+ D+ TN +GFG+V F+
Sbjct: 126 VKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFE 159
>gi|158291352|ref|XP_001237501.2| AGAP003171-PA [Anopheles gambiae str. PEST]
gi|157017734|gb|EAU77012.2| AGAP003171-PA [Anopheles gambiae str. PEST]
Length = 363
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 79/158 (50%), Gaps = 20/158 (12%)
Query: 57 MFKPYGEVETVRFRSVPVADITLPRKACIKM--NKVHEKRTNMNAYVRFKNLESVEKALE 114
MF YG ++T+R R+ +KM KV K ++NAYV + + E +E+A +
Sbjct: 129 MFSKYGTIQTIRLRT----------NTGLKMFNKKVLSKVPSLNAYVVYNSKEEMEQACQ 178
Query: 115 MNGHVIDEHTIRVDKALTTTKSNSHS-IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRD 173
++G ++ + IRV A ++ + +F+GNI + +L + F G I+ VR I D
Sbjct: 179 LDGEMVSNNRIRVCPADKKQIGDAKATVFVGNIARGTTDNDLHEFFSRVGPIEYVRQIGD 238
Query: 174 QHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIR 211
++ YV FK + + KA + E N RLIR
Sbjct: 239 KY------VAYVCFK-KGVSIMKALKLNQESLNGRLIR 269
>gi|90076284|dbj|BAE87822.1| unnamed protein product [Macaca fascicularis]
Length = 231
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 59/108 (54%), Gaps = 2/108 (1%)
Query: 94 RTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALT-TTKSNSHSIFIGNIPFEAEE 152
R+ +V FK+ SV+K LE+ H +D I +A K +F+G + + E
Sbjct: 68 RSRGFGFVLFKDAASVDKVLELKEHKLDGKLIDPKRAKALKGKGPPKKVFVGGLSPDTSE 127
Query: 153 EELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFES 200
E++++ F + GEI+N+ L D TN +GF ++ + +EE ++K ES
Sbjct: 128 EQIKEYFGAFGEIENIELPMDTKTNERRGFCFITY-TDEEPVKKLLES 174
>gi|51893978|ref|YP_076669.1| glycine-rich RNA-binding protein [Symbiobacterium thermophilum IAM
14863]
gi|51857667|dbj|BAD41825.1| glycine-rich RNA-binding protein [Symbiobacterium thermophilum IAM
14863]
Length = 86
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 40/58 (68%), Gaps = 1/58 (1%)
Query: 140 SIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKA 197
SI++GN+P+ E+LR FE GE++N R+I D+ T +GFG+V+ A+EE R+A
Sbjct: 4 SIYVGNLPWSTTPEDLRALFEPYGEVENARIITDRETGRSRGFGFVDM-ADEEAARRA 60
Score = 40.8 bits (94), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 27/43 (62%)
Query: 183 GYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVN 225
G + + E+LR FE GE++N R+I D+ T +GFG+V+
Sbjct: 8 GNLPWSTTPEDLRALFEPYGEVENARIITDRETGRSRGFGFVD 50
>gi|241997552|ref|XP_002433425.1| RNA recognition motif-containing protein [Ixodes scapularis]
gi|215490848|gb|EEC00489.1| RNA recognition motif-containing protein [Ixodes scapularis]
Length = 466
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 41/68 (60%)
Query: 127 VDKALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVN 186
V L+ + + S+F+GNIP+EA EE+L+ F G + + RL+ D+ T KG+G+
Sbjct: 4 VQGVLSAAERSVRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCE 63
Query: 187 FKAEEEEL 194
+K +E L
Sbjct: 64 YKDQETAL 71
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 32/54 (59%)
Query: 183 GYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKVSFTTLSSI 236
G + ++A EE+L+ F G + + RL+ D+ T KG+G+ +K T LS++
Sbjct: 21 GNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYKDQETALSAM 74
>gi|425771836|gb|EKV10269.1| Nucleolar protein 12 [Penicillium digitatum Pd1]
gi|425777183|gb|EKV15367.1| Nucleolar protein 12 [Penicillium digitatum PHI26]
Length = 526
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 88/182 (48%), Gaps = 19/182 (10%)
Query: 52 SSVTSMFKPYGEVETVRFRSVPVADIT-LPRKAC-IKMNKVHEKRTNMNAYVRFKNLESV 109
SS+ P+ ++E++RFRSV A +P++A K + E + NAY + L +
Sbjct: 226 SSLPESTGPH-KIESIRFRSVAFASGGGIPKRASFAKRELLDETTPSTNAYAVYTTLHAA 284
Query: 110 EKA-LEMNGHVIDEHTIRVDK-ALTTTKSNSHSIFIGNIPF---EAEEEELRKAFESCGE 164
KA +NG ++ + +RVD A + + +F+GN+ F E EE+ E G+
Sbjct: 285 RKAPAALNGTIVLDRHLRVDSLAHPSEIDHKRCVFVGNLSFIDSETPEED-----EKTGK 339
Query: 165 IDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYV 224
R D + + F +++ ++K ++ VR+IRD T +GKGF YV
Sbjct: 340 KKKARAPADVEEGLWRIFNAHTGGKDKKAIKK------NVEFVRVIRDSTTRVGKGFAYV 393
Query: 225 NF 226
F
Sbjct: 394 QF 395
>gi|410957345|ref|XP_003985289.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D-like isoform 3
[Felis catus]
Length = 363
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 59/108 (54%), Gaps = 2/108 (1%)
Query: 94 RTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALT-TTKSNSHSIFIGNIPFEAEE 152
R+ +V FK+ SV+K LE+ H +D I +A K +F+G + + E
Sbjct: 187 RSRGFGFVLFKDAASVDKVLELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDTSE 246
Query: 153 EELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFES 200
E++++ F + GEI+N+ L D TN +GF ++ + +EE ++K ES
Sbjct: 247 EQIKEYFGAFGEIENIELPMDTKTNERRGFCFITY-TDEEPVKKLLES 293
>gi|426344797|ref|XP_004038940.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D-like isoform 3
[Gorilla gorilla gorilla]
Length = 363
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 59/108 (54%), Gaps = 2/108 (1%)
Query: 94 RTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALT-TTKSNSHSIFIGNIPFEAEE 152
R+ +V FK+ SV+K LE+ H +D I +A K +F+G + + E
Sbjct: 187 RSRGFGFVLFKDAASVDKVLELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDTSE 246
Query: 153 EELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFES 200
E++++ F + GEI+N+ L D TN +GF ++ + +EE ++K ES
Sbjct: 247 EQIKEYFGAFGEIENIELPMDTKTNERRGFCFITY-TDEEPVKKLLES 293
>gi|169768824|ref|XP_001818882.1| nuclear and cytoplasmic polyadenylated RNA-binding protein pub1
[Aspergillus oryzae RIB40]
gi|238498168|ref|XP_002380319.1| nuclear and cytoplasmic polyadenylated RNA-binding protein pub1
[Aspergillus flavus NRRL3357]
gi|83766740|dbj|BAE56880.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|220693593|gb|EED49938.1| nuclear and cytoplasmic polyadenylated RNA-binding protein pub1
[Aspergillus flavus NRRL3357]
gi|391874569|gb|EIT83434.1| RRM domain protein [Aspergillus oryzae 3.042]
Length = 477
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 68/132 (51%), Gaps = 10/132 (7%)
Query: 88 NKVHEKRTNMNAYVRFKNLESVEKALE-MNGHVIDEHTIRVDKALTTTKSNSHS------ 140
NK + K N +V F + + E+A++ +NG I + IRV+ A + +N
Sbjct: 126 NKFNSKGYNY-GFVEFDDPGAAERAMQTLNGRRIHQSEIRVNWAYQSNSTNKEDTSNHFH 184
Query: 141 IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFES 200
IF+G++ E +E L++AF + G + R++ D T +G+G+V F+ + + KA S
Sbjct: 185 IFVGDLSNEVNDEILQQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFR-DRADADKALGS 243
Query: 201 C-GEIDNVRLIR 211
GE R IR
Sbjct: 244 MDGEWLGSRAIR 255
>gi|395735093|ref|XP_003776523.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D-like isoform 3
[Pongo abelii]
gi|441625206|ref|XP_004089054.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D-like [Nomascus
leucogenys]
Length = 363
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 59/108 (54%), Gaps = 2/108 (1%)
Query: 94 RTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALT-TTKSNSHSIFIGNIPFEAEE 152
R+ +V FK+ SV+K LE+ H +D I +A K +F+G + + E
Sbjct: 187 RSRGFGFVLFKDAASVDKVLELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDTSE 246
Query: 153 EELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFES 200
E++++ F + GEI+N+ L D TN +GF ++ + +EE ++K ES
Sbjct: 247 EQIKEYFGAFGEIENIELPMDTKTNERRGFCFITY-TDEEPVKKLLES 293
>gi|406861752|gb|EKD14805.1| RNA recognition domain-containing protein [Marssonina brunnea f.
sp. 'multigermtubi' MB_m1]
Length = 495
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 63/121 (52%), Gaps = 9/121 (7%)
Query: 99 AYVRFKNLESVEKALE-MNGHVIDEHTIRVDKALTTTKSNSHS------IFIGNIPFEAE 151
+V + + + E+A++ +NG + + IRV+ A + SN IF+G++ E
Sbjct: 132 GFVEYDDPAAAERAMQTLNGRRVHQAEIRVNWAYQSNTSNKEDTSNHFHIFVGDLSNEVN 191
Query: 152 EEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESC-GEIDNVRLI 210
+E L +AF + G + R++ D T +G+G+V F+ E ++ KA S GE R I
Sbjct: 192 DEVLLQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFR-ERQDAEKALSSMDGEWLGSRAI 250
Query: 211 R 211
R
Sbjct: 251 R 251
Score = 37.4 bits (85), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 30/147 (20%), Positives = 57/147 (38%), Gaps = 57/147 (38%)
Query: 135 KSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGY---------- 184
+ N ++++G + E+ LR+ FE+ G + NV++I D+++ KGF Y
Sbjct: 85 EPNKRALYVGGLDPRVTEDVLRQIFETTGHVQNVKIIPDKNS---KGFNYGFVEYDDPAA 141
Query: 185 -------------------VNFKAE-------------------------EEELRKAFES 200
VN+ + +E L +AF +
Sbjct: 142 AERAMQTLNGRRVHQAEIRVNWAYQSNTSNKEDTSNHFHIFVGDLSNEVNDEVLLQAFSA 201
Query: 201 CGEIDNVRLIRDQHTNIGKGFGYVNFK 227
G + R++ D T +G+G+V F+
Sbjct: 202 FGSVSEARVMWDMKTGRSRGYGFVAFR 228
>gi|405963791|gb|EKC29337.1| RNA-binding protein 39 [Crassostrea gigas]
Length = 557
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 64/120 (53%), Gaps = 14/120 (11%)
Query: 93 KRTNMNAYVRFKNLESVEKALEMNGH------VIDEHTI----RVDKA---LTTTKSNSH 139
+R+ +YV F++ +SV A+ + +I +H+ RV LT
Sbjct: 201 RRSKGISYVEFQDTDSVPLAIGLTNQKLLGVPIIVQHSQAEKNRVGNPTSILTKGNIGPM 260
Query: 140 SIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
+++G++ F EE LR FE G+ID+++LIRD TN +G+G++ F + E+ +KA E
Sbjct: 261 RLYVGSLHFNITEEMLRGIFEPFGKIDDIKLIRDHETNRSQGYGFITFH-DSEDAKKALE 319
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 31/47 (65%)
Query: 183 GYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKVS 229
G ++F EE LR FE G+ID+++LIRD TN +G+G++ F S
Sbjct: 265 GSLHFNITEEMLRGIFEPFGKIDDIKLIRDHETNRSQGYGFITFHDS 311
Score = 37.0 bits (84), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 33/66 (50%)
Query: 123 HTIRVDKALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGF 182
+T + LT + ++ ++F + +L + F S G++ +VRLI D T KG
Sbjct: 147 YTRQPGPELTPEERDARTVFCMQLSARIRPRDLEEFFSSVGKVRDVRLIMDNKTRRSKGI 206
Query: 183 GYVNFK 188
YV F+
Sbjct: 207 SYVEFQ 212
>gi|351695029|gb|EHA97947.1| Heterogeneous nuclear ribonucleoprotein D-like protein, partial
[Heterocephalus glaber]
Length = 340
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/201 (23%), Positives = 85/201 (42%), Gaps = 30/201 (14%)
Query: 12 MIPTQNRNLMSKLKVFLNIWKMALKLKMNPSLTKSKNHAL-----------SSVTSMFKP 60
+ P M + + NI + A K+N S + + + +T
Sbjct: 31 LSPADGSATMEDMNEYSNIEEFAEGSKINASKNQQDDGKMFIGGLSWDTSKKDLTEYLSR 90
Query: 61 YGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVI 120
+GEV ++ PV R+ +V FK+ SV+K LE+ H +
Sbjct: 91 FGEVVDCTIKTDPVTG-----------------RSRGFGFVLFKDAASVDKVLELKEHKL 133
Query: 121 DEHTIRVDKALT-TTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIG 179
D I +A K +F+G + + EE++++ F + GEI+N+ L D TN
Sbjct: 134 DGKLIDPKRAKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNER 193
Query: 180 KGFGYVNFKAEEEELRKAFES 200
+GF ++ + +EE ++K ES
Sbjct: 194 RGFCFITY-TDEEPVKKLLES 213
>gi|308504932|ref|XP_003114649.1| hypothetical protein CRE_28335 [Caenorhabditis remanei]
gi|308258831|gb|EFP02784.1| hypothetical protein CRE_28335 [Caenorhabditis remanei]
Length = 150
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 46/85 (54%)
Query: 132 TTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEE 191
TT S S+++GN+P++ EEE+ F + G ++NVR++ D+ T +GF +V + E
Sbjct: 65 TTMASQGFSVYVGNVPYQGTEEEIGNYFSTVGIVNNVRIVYDRETGRPRGFAFVEYSEEA 124
Query: 192 EELRKAFESCGEIDNVRLIRDQHTN 216
R E G N R +R + N
Sbjct: 125 GAQRAVEELNGAAFNGRNLRVNYAN 149
Score = 36.6 bits (83), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 27/44 (61%)
Query: 183 GYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 226
G V ++ EEE+ F + G ++NVR++ D+ T +GF +V +
Sbjct: 77 GNVPYQGTEEEIGNYFSTVGIVNNVRIVYDRETGRPRGFAFVEY 120
>gi|256082234|ref|XP_002577364.1| rna-binding protein musashi-related [Schistosoma mansoni]
Length = 263
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 55/106 (51%), Gaps = 7/106 (6%)
Query: 93 KRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKAL-------TTTKSNSHSIFIGN 145
KR+ ++ F + VEK LE H++D I A+ T + + +FIG
Sbjct: 9 KRSRGFGFITFSDPVCVEKVLETAPHILDYKKIDPKLAVPRKSGQNTKVSTKTKRVFIGG 68
Query: 146 IPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEE 191
+ + EEL + F G++++ L+ D+ TN +GFG+V F++EE
Sbjct: 69 VATQTTNEELSEYFSQFGKLESCELMMDKSTNRHRGFGFVTFESEE 114
>gi|398407631|ref|XP_003855281.1| hypothetical protein MYCGRDRAFT_36576 [Zymoseptoria tritici IPO323]
gi|339475165|gb|EGP90257.1| hypothetical protein MYCGRDRAFT_36576 [Zymoseptoria tritici IPO323]
Length = 598
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/142 (34%), Positives = 70/142 (49%), Gaps = 21/142 (14%)
Query: 94 RTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVD--------KALTT----TKSNS--- 138
R+ YV F + ESV+KALE+ G + I V +A T+ T+SN
Sbjct: 251 RSKGVGYVEFADEESVQKALELTGQKLMNIPIIVQLTEAEKNRQARTSEGQPTQSNGIPF 310
Query: 139 HSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEE-----E 193
H +++GNI F EE +LR FE GE++ V+L + + T KG+G+V F +E E
Sbjct: 311 HRLYVGNIHFSIEESDLRDVFEPFGELEFVQLQK-EDTGRSKGYGFVQFAKSDEAKIALE 369
Query: 194 LRKAFESCGEIDNVRLIRDQHT 215
FE G V L D+ T
Sbjct: 370 KMNGFEVAGRPIRVGLGSDKFT 391
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 131 LTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAE 190
L + + ++F+ + ++L+ FE G + ++++D+ + KG GYV F A+
Sbjct: 204 LDQEERDKRTVFVQQLAAALRTKQLKAFFEQSGPVVEAQIVKDRVSGRSKGVGYVEF-AD 262
Query: 191 EEELRKAFESCGE 203
EE ++KA E G+
Sbjct: 263 EESVQKALELTGQ 275
>gi|350540024|ref|NP_001232117.1| heterogeneous nuclear ribonucleoprotein D-like [Taeniopygia
guttata]
gi|197129483|gb|ACH45981.1| putative heterogeneous nuclear ribonucleoprotein D-like variant 1
[Taeniopygia guttata]
Length = 301
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 59/108 (54%), Gaps = 2/108 (1%)
Query: 94 RTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALT-TTKSNSHSIFIGNIPFEAEE 152
R+ +V FK+ SVEK LE+ H +D I +A K +F+G + + E
Sbjct: 69 RSRGFGFVLFKDAASVEKVLELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDTSE 128
Query: 153 EELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFES 200
E++++ F + GEI+N+ L D TN +GF ++ + +EE ++K ES
Sbjct: 129 EQIKEYFGAFGEIENIELPMDTKTNXRRGFCFITY-TDEEPVKKLLES 175
>gi|218200393|gb|EEC82820.1| hypothetical protein OsI_27609 [Oryza sativa Indica Group]
Length = 164
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 73/148 (49%), Gaps = 24/148 (16%)
Query: 82 KAC--IKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDE-------HTIRVDKALT 132
+ C + M + E RT MNA F +L+ E ++++ V+ + HT V +
Sbjct: 20 RGCGFVTMRSLPEARTAMNALDGF-DLDGREMLVKLSSDVVSKRRNINMTHTPPVKDHIF 78
Query: 133 TTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEE 192
+ H I++GNI + E +ELR+ F CG + + RL+ D+ G+ +G+++F + EE
Sbjct: 79 ESP---HKIYVGNIAWSVEPQELREYFSQCGTVVSTRLLTDRKGGRGRVYGFLSFASAEE 135
Query: 193 ELRKAFESCGEIDNVR------LIRDQH 214
E+ ++DN L+R H
Sbjct: 136 -----LEAALKLDNTHFHGRNILVRQAH 158
>gi|425768240|gb|EKV06770.1| Nuclear and cytoplasmic polyadenylated RNA-binding protein pub1
[Penicillium digitatum Pd1]
gi|425770410|gb|EKV08883.1| Nuclear and cytoplasmic polyadenylated RNA-binding protein pub1
[Penicillium digitatum PHI26]
Length = 482
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 65/121 (53%), Gaps = 9/121 (7%)
Query: 99 AYVRFKNLESVEKALE-MNGHVIDEHTIRVDKAL---TTTK---SNSHSIFIGNIPFEAE 151
+V F + + E+A++ +NG I + IRV+ A +T+K SN IF+G++ E
Sbjct: 138 GFVEFDDPGAAERAMQTLNGRRIHQSEIRVNWAYQSNSTSKEDTSNHFHIFVGDLSNEVN 197
Query: 152 EEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESC-GEIDNVRLI 210
+E L +AF + G + R++ D T +G+G+V F+ + E KA S GE R I
Sbjct: 198 DEVLTQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFR-DRTEADKALNSMDGEWLGSRAI 256
Query: 211 R 211
R
Sbjct: 257 R 257
>gi|242280537|ref|YP_002992666.1| RNP-1 like RNA-binding protein [Desulfovibrio salexigens DSM 2638]
gi|242123431|gb|ACS81127.1| RNP-1 like RNA-binding protein [Desulfovibrio salexigens DSM 2638]
Length = 87
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 54/92 (58%), Gaps = 17/92 (18%)
Query: 138 SHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKA 197
S +I++GN+P+ A E+E+R AFE+ GE+ +V+LI D+ T +GFG+V E E A
Sbjct: 2 SKNIYVGNLPWSATEDEVRAAFEAFGEVVSVKLIEDRETGRPRGFGFV-----EMEDAGA 56
Query: 198 FESCGEIDNVRLIRDQHTNIGKGFGYVNFKVS 229
E+ IDN+ GK FG N KV+
Sbjct: 57 MEA---IDNLD---------GKDFGGRNLKVN 76
>gi|426374423|ref|XP_004054073.1| PREDICTED: RNA-binding protein Musashi homolog 1, partial [Gorilla
gorilla gorilla]
Length = 303
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 58/113 (51%), Gaps = 5/113 (4%)
Query: 84 CIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVD-----KALTTTKSNS 138
C+ M KR+ +V F + V+K L + H +D TI +A + +
Sbjct: 1 CLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVTRT 60
Query: 139 HSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEE 191
IF+G + E++++ FE G++D+ L+ D+ TN +GFG+V F++E+
Sbjct: 61 KKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESED 113
>gi|268531322|ref|XP_002630787.1| Hypothetical protein CBG02484 [Caenorhabditis briggsae]
Length = 403
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 71/137 (51%), Gaps = 8/137 (5%)
Query: 83 ACIKMNKVHEKRTNMNAYVRFKNLESVEKALE-MNGHVIDEHTIRVDKALTTTKSNSH-- 139
+ K +H+ + A+V F + +AL+ MN ++ + ++V+ A+ + S
Sbjct: 67 SVTKTKVIHDGANDPYAFVEFSDHGQASQALQTMNKRLLHDREMKVNWAVEPGQQPSKID 126
Query: 140 -----SIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEEL 194
+F+G++ E + ++LR+AF G++ + ++IRD +T KG+G+V++ EE
Sbjct: 127 TTRHFHVFVGDLSSEVDNQKLREAFIPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAE 186
Query: 195 RKAFESCGEIDNVRLIR 211
R + G+ R IR
Sbjct: 187 RAIEQMNGQWLGRRTIR 203
Score = 43.9 bits (102), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 50/112 (44%), Gaps = 29/112 (25%)
Query: 99 AYVRFKNLESVEKALE-MNGHVIDEHTIRV---------------------DKALTTTKS 136
+V + E E+A+E MNG + TIR D+ T
Sbjct: 175 GFVSYPKREEAERAIEQMNGQWLGRRTIRTNWATRKPGDQEKPSNYNEKSYDEVYNQTSG 234
Query: 137 NSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK 188
++ S+++GNI E+E+R+AF S G I VR+ + Q G+ +V F+
Sbjct: 235 DNTSVYVGNIA-NLTEDEIRQAFASYGRISEVRIFKMQ------GYAFVKFE 279
>gi|395834189|ref|XP_003790094.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D-like isoform 3
[Otolemur garnettii]
Length = 363
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 59/108 (54%), Gaps = 2/108 (1%)
Query: 94 RTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALT-TTKSNSHSIFIGNIPFEAEE 152
R+ +V FK+ SV+K LE+ H +D I +A K +F+G + + E
Sbjct: 187 RSRGFGFVLFKDAASVDKVLELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDTSE 246
Query: 153 EELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFES 200
E++++ F + GEI+N+ L D TN +GF ++ + +EE ++K ES
Sbjct: 247 EQIKEYFGAFGEIENIELPMDTKTNERRGFCFITY-TDEEPVKKLLES 293
>gi|303323779|ref|XP_003071881.1| RNA recognition motif containing protein [Coccidioides posadasii
C735 delta SOWgp]
gi|240111583|gb|EER29736.1| RNA recognition motif containing protein [Coccidioides posadasii
C735 delta SOWgp]
gi|320031835|gb|EFW13793.1| nucleic acid-binding protein [Coccidioides posadasii str. Silveira]
Length = 334
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 61/110 (55%), Gaps = 11/110 (10%)
Query: 99 AYVRFKNLESVEKALE-MNGHVIDEHTIRV-------DKALT--TTKSNSHSIFIGNIPF 148
YV+F ++E+ EKA+ M+G + + + V DK + TK + +++IGNIPF
Sbjct: 184 GYVKFHDVETAEKAVALMHGQLFEGRHLAVNFARVELDKPMNHDPTKPPTRTLYIGNIPF 243
Query: 149 EAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAF 198
E + +L + F+ I +VR+ D+ T +GF + +F + E RKAF
Sbjct: 244 EMTDRDLNELFKDVDNIIDVRVAVDRRTGRARGFVHADF-TDIESARKAF 292
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Query: 140 SIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 187
+I++GN+ F+ +L+ F CG ++ VRL+ D + + KGFGYV F
Sbjct: 142 TIYVGNLFFDVTAGDLKNEFSKCGPVEGVRLLYD-YRGVSKGFGYVKF 188
Score = 38.9 bits (89), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 183 GYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 226
G + F +L+ F CG ++ VRL+ D + + KGFGYV F
Sbjct: 146 GNLFFDVTAGDLKNEFSKCGPVEGVRLLYD-YRGVSKGFGYVKF 188
>gi|397525478|ref|XP_003832693.1| PREDICTED: RNA-binding protein Musashi homolog 1 [Pan paniscus]
Length = 424
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 59/115 (51%), Gaps = 5/115 (4%)
Query: 82 KACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVD-----KALTTTKS 136
K C+ M KR+ +V F + V+K L + H +D TI +A +
Sbjct: 120 KECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVT 179
Query: 137 NSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEE 191
+ IF+G + E++++ FE G++D+ L+ D+ TN +GFG+V F++E+
Sbjct: 180 RTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESED 234
>gi|76096336|ref|NP_001028868.1| heterogeneous nuclear ribonucleoprotein D-like [Rattus norvegicus]
gi|123783017|sp|Q3SWU3.1|HNRDL_RAT RecName: Full=Heterogeneous nuclear ribonucleoprotein D-like;
Short=hnRNP D-like; Short=hnRNP DL
gi|74356265|gb|AAI04684.1| Heterogeneous nuclear ribonucleoprotein D-like [Rattus norvegicus]
Length = 322
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 59/108 (54%), Gaps = 2/108 (1%)
Query: 94 RTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALT-TTKSNSHSIFIGNIPFEAEE 152
R+ +V FK+ SV+K LE+ H +D I +A K +F+G + + E
Sbjct: 90 RSRGFGFVLFKDAASVDKVLELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDTSE 149
Query: 153 EELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFES 200
E++++ F + GEI+N+ L D TN +GF ++ + +EE ++K ES
Sbjct: 150 EQIKEYFGAFGEIENIELPMDTKTNERRGFCFITY-TDEEPVKKLLES 196
>gi|154799956|dbj|BAF75023.1| Musashi-1b [Cynops pyrrhogaster]
Length = 346
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 58/115 (50%), Gaps = 5/115 (4%)
Query: 82 KACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVD-----KALTTTKS 136
K C+ M KR+ +V F + V+K L + H +D TI +A +
Sbjct: 47 KECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVT 106
Query: 137 NSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEE 191
+ IF+G + E++++ FE G++D+ L+ D+ TN +GFG+V F+ E+
Sbjct: 107 RTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFEVED 161
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/138 (23%), Positives = 56/138 (40%), Gaps = 50/138 (36%)
Query: 141 IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEE--------- 191
+FIG + ++ +E LR+ F GE+ ++RD T +GFG+V F +
Sbjct: 22 MFIGGLSWQTTQEGLREYFGQYGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS 81
Query: 192 -----------------------------------------EELRKAFESCGEIDNVRLI 210
E++++ FE G++D+ L+
Sbjct: 82 RHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLM 141
Query: 211 RDQHTNIGKGFGYVNFKV 228
D+ TN +GFG+V F+V
Sbjct: 142 FDKTTNRHRGFGFVTFEV 159
>gi|449276581|gb|EMC85043.1| Heterogeneous nuclear ribonucleoprotein D-like protein, partial
[Columba livia]
Length = 271
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 59/108 (54%), Gaps = 2/108 (1%)
Query: 94 RTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALT-TTKSNSHSIFIGNIPFEAEE 152
R+ +V FK+ SVEK LE+ H +D I +A K +F+G + + E
Sbjct: 39 RSRGFGFVLFKDAASVEKVLELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDTSE 98
Query: 153 EELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFES 200
E++++ F + GEI+N+ L D TN +GF ++ + +EE ++K ES
Sbjct: 99 EQIKEYFGAFGEIENIELPMDTKTNERRGFCFITY-TDEEPVKKLLES 145
>gi|353230165|emb|CCD76336.1| rna-binding protein musashi-related [Schistosoma mansoni]
Length = 346
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 55/106 (51%), Gaps = 7/106 (6%)
Query: 93 KRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKAL-------TTTKSNSHSIFIGN 145
KR+ ++ F + VEK LE H++D I A+ T + + +FIG
Sbjct: 116 KRSRGFGFITFSDPVCVEKVLETAPHILDYKKIDPKLAVPRKSGQNTKVSTKTKRVFIGG 175
Query: 146 IPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEE 191
+ + EEL + F G++++ L+ D+ TN +GFG+V F++EE
Sbjct: 176 VATQTTNEELSEYFSQFGKLESCELMMDKSTNRHRGFGFVTFESEE 221
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 31/148 (20%), Positives = 53/148 (35%), Gaps = 52/148 (35%)
Query: 132 TTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF---- 187
T ++ +FIG + E LR F+ GE+ ++RD T +GFG++ F
Sbjct: 71 TADSNDPGKMFIGGLSPTTTSEGLRDYFQKYGELREYMIMRDPLTKRSRGFGFITFSDPV 130
Query: 188 ------------------------------------------------KAEEEELRKAFE 199
+ EEL + F
Sbjct: 131 CVEKVLETAPHILDYKKIDPKLAVPRKSGQNTKVSTKTKRVFIGGVATQTTNEELSEYFS 190
Query: 200 SCGEIDNVRLIRDQHTNIGKGFGYVNFK 227
G++++ L+ D+ TN +GFG+V F+
Sbjct: 191 QFGKLESCELMMDKSTNRHRGFGFVTFE 218
>gi|350629665|gb|EHA18038.1| hypothetical protein ASPNIDRAFT_176547 [Aspergillus niger ATCC
1015]
Length = 496
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 62/121 (51%), Gaps = 9/121 (7%)
Query: 99 AYVRFKNLESVEKALE-MNGHVIDEHTIRVDKALTTTKSNSHS------IFIGNIPFEAE 151
+V F + + E+A++ +NG I + IRV+ A + +N IF+G++ E
Sbjct: 136 GFVEFDDPGAAERAMQTLNGRRIHQSEIRVNWAYQSNSTNKEDTSNHFHIFVGDLSNEVN 195
Query: 152 EEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESC-GEIDNVRLI 210
+E L +AF + G + R++ D T +G+G+V F+ E + KA S GE R I
Sbjct: 196 DEVLLQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFR-ERSDADKALSSMDGEWLGSRAI 254
Query: 211 R 211
R
Sbjct: 255 R 255
>gi|83775425|dbj|BAE65545.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|391864245|gb|EIT73541.1| RRM domain protein [Aspergillus oryzae 3.042]
Length = 561
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 101/207 (48%), Gaps = 16/207 (7%)
Query: 26 VFL-NIWKMALKLK-MNPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADIT-LPRK 82
VFL N+ A+K K +L K LS++ P+ +VE++RFRS A +P++
Sbjct: 231 VFLSNVSNEAIKSKSAKKTLLKHFESFLSTLPESTGPH-KVESIRFRSTAFASGGKIPKR 289
Query: 83 ACIKMNKVHEKRT-NMNAYVRFKNLESVEKA-LEMNGHVIDEHTIRVDK-ALTTTKSNSH 139
A +V ++ T + NAY+ + +++ KA + +NG V+ + +RVD A N
Sbjct: 290 AAFAKREVLDETTPSTNAYIVYSTVQAARKAPVALNGTVVLDRHVRVDSVAHPAPVDNKR 349
Query: 140 SIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
+F+GN+ F +E + + + + + F K +++ R+
Sbjct: 350 CVFVGNLNFVDQEGNADDEEKPKKKKAPADV----EEGLWRTFNAHTSKPKDQATRR--- 402
Query: 200 SCGEIDNVRLIRDQHTNIGKGFGYVNF 226
G +++VR++RD T + KGF YV F
Sbjct: 403 --GNVESVRVVRDSVTRVSKGFAYVQF 427
>gi|332029721|gb|EGI69600.1| Nucleolysin TIAR [Acromyrmex echinatior]
Length = 393
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 64/131 (48%), Gaps = 11/131 (8%)
Query: 90 VHEKRTNMNAYVRFKNLESVEKALE-MNGHVIDEHTIRVDKALTTTK------SNSHSIF 142
+ E + A+V F N + AL MN + ++V+ A + SN H IF
Sbjct: 40 IREPGNDPYAFVEFTNHQCAATALAAMNKRSFLDKEMKVNWATSPGNQPKLDTSNHHHIF 99
Query: 143 IGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF--KAEEEELRKAFES 200
+G++ E E + L++AF GEI N R++RD T KG+ +V+F K+E E A
Sbjct: 100 VGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKSEAEAAINAMN- 158
Query: 201 CGEIDNVRLIR 211
G+ R IR
Sbjct: 159 -GQWLGSRSIR 168
Score = 38.5 bits (88), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 24/37 (64%)
Query: 190 EEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 226
E + L++AF GEI N R++RD T KG+ +V+F
Sbjct: 108 ETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSF 144
>gi|322695076|gb|EFY86891.1| cutinase negative acting protein [Metarhizium acridum CQMa 102]
Length = 516
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 56/115 (48%), Gaps = 21/115 (18%)
Query: 99 AYVRFKNLESVEKALE-MNGHVIDEHTIRVDKA-----------LTTTKSNSH------- 139
YV F+ E+ KA E M G +D + +D A T ++ H
Sbjct: 311 GYVDFETAEAATKAYEAMQGSELDSRPLNLDYANSRPADSNPRDRATDRAKKHGDSVSPE 370
Query: 140 --SIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEE 192
++FIGN+PF+ ++E +R+ F E+ +VRL D + KGFGYV F + E+
Sbjct: 371 SETLFIGNLPFDTDQETVRQFFAEVAEVASVRLPTDPDSGNLKGFGYVTFTSVED 425
Score = 37.7 bits (86), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 129 KALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK 188
K T + + ++F GN+ + ++ L +AF+ + R++ D+ +GFGYV+F+
Sbjct: 257 KKAKTDEQAASTLFAGNLSWNIDDNTLSEAFKGFEGLVGARVVTDRDGGRSRGFGYVDFE 316
Query: 189 AEEEELRKAFES--CGEIDNVRL 209
E KA+E+ E+D+ L
Sbjct: 317 TAEAAT-KAYEAMQGSELDSRPL 338
>gi|154799954|dbj|BAF75022.1| Musashi-1a [Cynops pyrrhogaster]
Length = 361
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 58/115 (50%), Gaps = 5/115 (4%)
Query: 82 KACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVD-----KALTTTKS 136
K C+ M KR+ +V F + V+K L + H +D TI +A +
Sbjct: 47 KECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVT 106
Query: 137 NSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEE 191
+ IF+G + E++++ FE G++D+ L+ D+ TN +GFG+V F+ E+
Sbjct: 107 RTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFEVED 161
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/138 (23%), Positives = 56/138 (40%), Gaps = 50/138 (36%)
Query: 141 IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEE--------- 191
+FIG + ++ +E LR+ F GE+ ++RD T +GFG+V F +
Sbjct: 22 MFIGGLSWQTTQEGLREYFGQYGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS 81
Query: 192 -----------------------------------------EELRKAFESCGEIDNVRLI 210
E++++ FE G++D+ L+
Sbjct: 82 RHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLM 141
Query: 211 RDQHTNIGKGFGYVNFKV 228
D+ TN +GFG+V F+V
Sbjct: 142 FDKTTNRHRGFGFVTFEV 159
>gi|452986364|gb|EME86120.1| hypothetical protein MYCFIDRAFT_52503 [Pseudocercospora fijiensis
CIRAD86]
Length = 482
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 64/121 (52%), Gaps = 9/121 (7%)
Query: 99 AYVRFKNLESVEKALE-MNGHVIDEHTIRVDKAL---TTTK---SNSHSIFIGNIPFEAE 151
+V + + + E+A++ +NG + + IRV+ A T TK SN IF+G++ E
Sbjct: 126 GFVEYDDPGAAERAMQTLNGRRVHQQEIRVNWAYQSNTATKEDTSNHFHIFVGDLSNEVN 185
Query: 152 EEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESC-GEIDNVRLI 210
+E L +AF + G + R++ D T +G+G+V F+ + E KA S GE R I
Sbjct: 186 DEVLLQAFSAFGNVSEARVMWDMKTGRSRGYGFVAFR-DRGEAEKALSSMDGEWLGSRAI 244
Query: 211 R 211
R
Sbjct: 245 R 245
>gi|320591904|gb|EFX04343.1| nucleolin protein [Grosmannia clavigera kw1407]
Length = 413
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 70/142 (49%), Gaps = 27/142 (19%)
Query: 93 KRTNMNAYVRFKNLESVEKALE-MNGHVIDEHTIRVDKALTTTKSN-------------- 137
+R+ YV F ++E + A + M G+ +D +++D + KSN
Sbjct: 204 QRSRGFGYVEFDSVEHAQAAFDKMTGYFLDGRELKIDFSTGRAKSNDANPAASRAKKYGD 263
Query: 138 -----SHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEE 192
S ++F+GN+ F+A+EE + F + ++RL D + KGFGYV+F + E+
Sbjct: 264 VTSPESDTLFVGNLSFDADEETVSAFFSEVANVKSLRLPTDMESGRPKGFGYVSFYSLED 323
Query: 193 ELRKAFE-----SCGEIDNVRL 209
+KAF+ SC NVRL
Sbjct: 324 S-KKAFDTLNGQSCAGR-NVRL 343
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 121 DEHTIRVDKALTTTKS-NSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIG 179
DE KA T + S ++F+GN+ + ++ L F+ + R+I D+ T
Sbjct: 147 DEEPAAAKKAKTEEEGETSSTLFVGNLSWNVDDSVLYDEFKGFDGLTGARVITDRETQRS 206
Query: 180 KGFGYVNF 187
+GFGYV F
Sbjct: 207 RGFGYVEF 214
>gi|195375104|ref|XP_002046343.1| GJ12844 [Drosophila virilis]
gi|194153501|gb|EDW68685.1| GJ12844 [Drosophila virilis]
Length = 468
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 68/158 (43%), Gaps = 38/158 (24%)
Query: 46 SKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMN---AYVR 102
+K H F PYGE+E DI + V +K T N AYV+
Sbjct: 33 NKAHTEEDFREAFAPYGEIE----------DIWV----------VKDKHTQENKGIAYVK 72
Query: 103 FKNLESVEKALE-MNGHVIDEHTIRVDKALTTTKSNSHS------------IFIGNIPFE 149
F KA E MNG I + T R K L N S +FI IP
Sbjct: 73 FSKTSDAAKAQEQMNGKTIGK-TDRTLKVLVAANRNQGSNKSDNEQEKYVRLFI-VIPKT 130
Query: 150 AEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 187
A E+++R F GE++NV ++R+++ KGFGYV F
Sbjct: 131 ATEDDIRDEFAQWGEVENVTIVREKNNGSPKGFGYVRF 168
>gi|398409740|ref|XP_003856335.1| hypothetical protein MYCGRDRAFT_102491 [Zymoseptoria tritici
IPO323]
gi|339476220|gb|EGP91311.1| hypothetical protein MYCGRDRAFT_102491 [Zymoseptoria tritici
IPO323]
Length = 505
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 59/121 (48%), Gaps = 22/121 (18%)
Query: 94 RTNMNAYVRFKNLESVEKALEM-NGHVIDEHTIRVD---------------------KAL 131
R+ YV F + ++ +KALE NG +D +R+D +
Sbjct: 281 RSKGFGYVEFSDPQNAKKALEAKNGAELDGRELRLDFSTPRTNDGPGAGNKSNDRAARFG 340
Query: 132 TTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEE 191
TT + + ++F+GNI F+A+E + + F+ G I VRL D+ T KGFGYV + E
Sbjct: 341 DTTNAPAATLFVGNISFDADENAITEYFQEHGTIKAVRLPTDRETGAPKGFGYVEMSSIE 400
Query: 192 E 192
E
Sbjct: 401 E 401
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 56/104 (53%), Gaps = 11/104 (10%)
Query: 124 TIRVDKALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFG 183
T VD++ T ++F+GNI + +EE L + FE GE+ VR+I D+ + KGFG
Sbjct: 232 TDAVDESAPT-----GNLFVGNISWNVDEEWLTREFEEFGELAGVRIITDRDSGRSKGFG 286
Query: 184 YVNFKAEEEELRKAFES--CGEIDNVRLIRD---QHTNIGKGFG 222
YV F ++ + +KA E+ E+D L D TN G G G
Sbjct: 287 YVEF-SDPQNAKKALEAKNGAELDGRELRLDFSTPRTNDGPGAG 329
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 28/44 (63%)
Query: 183 GYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 226
G +++ +EE L + FE GE+ VR+I D+ + KGFGYV F
Sbjct: 247 GNISWNVDEEWLTREFEEFGELAGVRIITDRDSGRSKGFGYVEF 290
>gi|344295376|ref|XP_003419388.1| PREDICTED: LOW QUALITY PROTEIN: probable RNA-binding protein
19-like [Loxodonta africana]
Length = 1089
Score = 58.5 bits (140), Expect = 2e-06, Method: Composition-based stats.
Identities = 37/118 (31%), Positives = 63/118 (53%), Gaps = 17/118 (14%)
Query: 99 AYVRFKNLESVEKAL-EMNGHVIDEHTI------RVDKALTTT--------KSNSHSIFI 143
+V ++ E +KAL ++ GHV+D H + R K TT+ K + I +
Sbjct: 770 GFVEYRKPEHAQKALRQLQGHVVDGHKLELRISERAIKPATTSTRKKQVARKQTTSKILV 829
Query: 144 GNIPFEAEEEELRKAFESCGEIDNVRLIRD-QHTNIGKGFGYVNFKAEEEELRKAFES 200
NIPF+A E+R+ F + GE+ VRL + T +GFG+V+F +++ ++AF +
Sbjct: 830 RNIPFQAHSREIRELFSTFGELKTVRLPKKVTGTGAHRGFGFVDFLTKQDA-KRAFNA 886
Score = 44.3 bits (103), Expect = 0.043, Method: Composition-based stats.
Identities = 46/189 (24%), Positives = 74/189 (39%), Gaps = 36/189 (19%)
Query: 66 TVRFRSVP-------VADITLPRKACIKMNKVHEKRTNMNAY--VRFKNLESVEKALEMN 116
TV+ R P V + P K + + V N Y V F + E V+KAL+ N
Sbjct: 295 TVKLRGAPFNVTEKNVTEFLAPLKP-VAIRIVRNSHGNKTGYIFVDFSSEEEVKKALKCN 353
Query: 117 GHVIDEHTIRV--DKALTTTK------------------------SNSHSIFIGNIPFEA 150
+ I V +K+ T K ++S +F+ N+P+ +
Sbjct: 354 REYMGGRYIEVFREKSSPTAKGPLKHGAKPWQGRTLGENEEEEDLADSGRLFVRNLPYTS 413
Query: 151 EEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLI 210
EEEL K F G + + D T KGF ++ F E ++ E G++ R++
Sbjct: 414 TEEELEKLFSKYGPLSELHYPIDSLTKKPKGFAFITFMFPEHAVKAYAEVDGQVFQGRML 473
Query: 211 RDQHTNIGK 219
+ I K
Sbjct: 474 HVLPSTIKK 482
>gi|222639809|gb|EEE67941.1| hypothetical protein OsJ_25829 [Oryza sativa Japonica Group]
Length = 164
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 73/148 (49%), Gaps = 24/148 (16%)
Query: 82 KAC--IKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDE-------HTIRVDKALT 132
+ C + M + E RT MNA F +L+ E ++++ V+ + HT V +
Sbjct: 20 RGCGFVTMRSLPEARTAMNALDGF-DLDGREMLVKLSSDVVSKRRNINMTHTPPVKDHIF 78
Query: 133 TTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEE 192
+ H I++GNI + E +ELR+ F CG + + RL+ D+ G+ +G+++F + EE
Sbjct: 79 ESP---HKIYVGNIAWSVEPQELREYFSQCGTVVSTRLLTDRKGGRGRVYGFLSFASAEE 135
Query: 193 ELRKAFESCGEIDNVR------LIRDQH 214
E+ ++DN L+R H
Sbjct: 136 -----LEAALKLDNTHFHGRNILVRQAH 158
>gi|348551182|ref|XP_003461409.1| PREDICTED: probable RNA-binding protein 19-like [Cavia porcellus]
Length = 961
Score = 58.5 bits (140), Expect = 2e-06, Method: Composition-based stats.
Identities = 37/118 (31%), Positives = 65/118 (55%), Gaps = 17/118 (14%)
Query: 99 AYVRFKNLESVEKAL-EMNGHVIDEHTIRV-------DKALTTT-------KSNSHSIFI 143
+V +K E +KAL ++ GHV+D H + V A+T++ K + I +
Sbjct: 778 GFVEYKKPEHAQKALRQLQGHVVDGHKVEVRISERATKPAMTSSWKKQVPRKQTTSKILV 837
Query: 144 GNIPFEAEEEELRKAFESCGEIDNVRLIRDQH-TNIGKGFGYVNFKAEEEELRKAFES 200
NIPF+A+ E+R+ F + GE+ VRL + T +GFG+V+F +++ ++AF +
Sbjct: 838 RNIPFQADLREIRELFSTFGELKTVRLPKKMAGTGRHRGFGFVDFFTKQDA-KRAFNA 894
Score = 42.4 bits (98), Expect = 0.18, Method: Composition-based stats.
Identities = 53/218 (24%), Positives = 85/218 (38%), Gaps = 40/218 (18%)
Query: 40 NPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVP-------VADITLPRKACIKMNKVHE 92
+P + K++ ++ PY TV+ R P V + P K + + V
Sbjct: 273 SPQVRKAEVEKAANQKEPTTPY----TVKLRGAPFNVTEKNVTEFLAPLKP-VAIRIVRN 327
Query: 93 KRTNMNAY--VRFKNLESVEKALE-----MNGHVID---EHTIRVDKALTTTKS------ 136
N Y V F + E V+KAL+ M G I+ E V KA S
Sbjct: 328 AHGNKTGYIFVDFSSEEEVKKALKCNREYMGGRYIEVFREKQAPVAKAPPKNSSKAWQGR 387
Query: 137 ------------NSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGY 184
+S +F+ N+P+ + EE+L K F + G + + D T KGF +
Sbjct: 388 TLGENEEEEDLADSGRLFVRNLPYTSTEEDLEKLFSAYGPLSELHYPIDTLTKKPKGFAF 447
Query: 185 VNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFG 222
V F E ++ E G++ R++ + I K G
Sbjct: 448 VTFLFPEHAVKAYAEVDGQVFQGRMLHVLPSTIKKEAG 485
>gi|119188517|ref|XP_001244865.1| hypothetical protein CIMG_04306 [Coccidioides immitis RS]
gi|392867773|gb|EAS33469.2| nucleic acid-binding protein [Coccidioides immitis RS]
Length = 334
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 61/110 (55%), Gaps = 11/110 (10%)
Query: 99 AYVRFKNLESVEKALE-MNGHVIDEHTIRV-------DKALT--TTKSNSHSIFIGNIPF 148
YV+F ++E+ EKA+ M+G + + + V DK + TK + +++IGNIPF
Sbjct: 184 GYVKFHDVETAEKAVALMHGQLFEGRHLAVNFARVELDKPMNHDPTKPPTRTLYIGNIPF 243
Query: 149 EAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAF 198
E + +L + F+ I +VR+ D+ T +GF + +F + E RKAF
Sbjct: 244 EMTDRDLNELFKDVDNIIDVRVAVDRRTGRARGFVHADF-TDIESARKAF 292
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Query: 140 SIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 187
+I++GN+ F+ +L+ F CG ++ VRL+ D + + KGFGYV F
Sbjct: 142 TIYVGNLFFDVTAGDLKNEFSKCGPVEGVRLLYD-YRGVSKGFGYVKF 188
Score = 38.9 bits (89), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 183 GYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 226
G + F +L+ F CG ++ VRL+ D + + KGFGYV F
Sbjct: 146 GNLFFDVTAGDLKNEFSKCGPVEGVRLLYD-YRGVSKGFGYVKF 188
>gi|326918700|ref|XP_003205626.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D-like
[Meleagris gallopavo]
Length = 264
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 59/108 (54%), Gaps = 2/108 (1%)
Query: 94 RTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALT-TTKSNSHSIFIGNIPFEAEE 152
R+ +V FK+ SVEK LE+ H +D I +A K +F+G + + E
Sbjct: 38 RSRGFGFVLFKDAASVEKVLELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDTSE 97
Query: 153 EELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFES 200
E++++ F + GEI+N+ L D TN +GF ++ + +EE ++K ES
Sbjct: 98 EQIKEYFGAFGEIENIELPMDTKTNERRGFCFITY-TDEEPVKKLLES 144
>gi|154799960|dbj|BAF75025.1| Musashi-1d [Cynops pyrrhogaster]
Length = 327
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 58/115 (50%), Gaps = 5/115 (4%)
Query: 82 KACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVD-----KALTTTKS 136
K C+ M KR+ +V F + V+K L + H +D TI +A +
Sbjct: 47 KECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVT 106
Query: 137 NSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEE 191
+ IF+G + E++++ FE G++D+ L+ D+ TN +GFG+V F+ E+
Sbjct: 107 RTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFEVED 161
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/138 (23%), Positives = 56/138 (40%), Gaps = 50/138 (36%)
Query: 141 IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEE--------- 191
+FIG + ++ +E LR+ F GE+ ++RD T +GFG+V F +
Sbjct: 22 MFIGGLSWQTTQEGLREYFGQYGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS 81
Query: 192 -----------------------------------------EELRKAFESCGEIDNVRLI 210
E++++ FE G++D+ L+
Sbjct: 82 RHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLM 141
Query: 211 RDQHTNIGKGFGYVNFKV 228
D+ TN +GFG+V F+V
Sbjct: 142 FDKTTNRHRGFGFVTFEV 159
>gi|17531965|ref|NP_495121.1| Protein TIAR-1, isoform a [Caenorhabditis elegans]
gi|373219010|emb|CCD65015.1| Protein TIAR-1, isoform a [Caenorhabditis elegans]
Length = 408
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 66/121 (54%), Gaps = 8/121 (6%)
Query: 99 AYVRFKNLESVEKALE-MNGHVIDEHTIRVDKALTTTKSNSH-------SIFIGNIPFEA 150
A+V F + +AL+ MN ++ + ++V+ A+ + S +F+G++ E
Sbjct: 87 AFVEFSDHGQASQALQTMNKRLLLDREMKVNWAVEPGQQQSKIDTTRHFHVFVGDLSSEV 146
Query: 151 EEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLI 210
+ ++LR+AF+ G++ + ++IRD +T KG+G+V++ EE R + G+ R I
Sbjct: 147 DNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTI 206
Query: 211 R 211
R
Sbjct: 207 R 207
Score = 42.0 bits (97), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 62/152 (40%), Gaps = 46/152 (30%)
Query: 58 FKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALE-MN 116
F+P+G+V +D + R +K + +V + E E+A+E MN
Sbjct: 155 FQPFGDV----------SDAKVIRDTNTTKSKGY-------GFVSYPKREEAERAIEQMN 197
Query: 117 GHVIDEHTIRV---------------------DKALTTTKSNSHSIFIGNIPFEAEEEEL 155
G + TIR D+ T ++ S+++GNI E+E+
Sbjct: 198 GQWLGRRTIRTNWATRKPGDQEKPSHYNEKSYDEIYNQTSGDNTSVYVGNIA-SLTEDEI 256
Query: 156 RKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 187
R+ F S G I VR+ + Q G+ +V F
Sbjct: 257 RQGFASFGRITEVRIFKMQ------GYAFVKF 282
Score = 38.5 bits (88), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 32/44 (72%)
Query: 183 GYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 226
G ++ + + ++LR+AF+ G++ + ++IRD +T KG+G+V++
Sbjct: 140 GDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSY 183
>gi|148687912|gb|EDL19859.1| Musashi homolog 1(Drosophila) [Mus musculus]
Length = 280
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 58/115 (50%), Gaps = 5/115 (4%)
Query: 82 KACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVD-----KALTTTKS 136
K C+ M KR+ +V F + V+K L + H +D TI +A +
Sbjct: 14 KECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVT 73
Query: 137 NSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEE 191
+ IF+G + E+++ FE G++D+ L+ D+ TN +GFG+V F++E+
Sbjct: 74 RTKKIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESED 128
>gi|22507308|ref|NP_683688.1| RNA-binding protein Musashi homolog 1 [Rattus norvegicus]
gi|51316134|sp|Q8K3P4.1|MSI1H_RAT RecName: Full=RNA-binding protein Musashi homolog 1;
Short=Musashi-1
gi|22073952|gb|AAK94485.1| RNA-binding protein Musashi-1 [Rattus norvegicus]
Length = 362
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 58/115 (50%), Gaps = 5/115 (4%)
Query: 82 KACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVD-----KALTTTKS 136
K C+ M KR+ +V F + V+K L + H +D TI +A +
Sbjct: 47 KECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVT 106
Query: 137 NSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEE 191
+ IF+G + E+++ FE G++D+ L+ D+ TN +GFG+V F++E+
Sbjct: 107 RTKKIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESED 161
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 56/137 (40%), Gaps = 50/137 (36%)
Query: 141 IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF------------- 187
+FIG + ++ +E LR+ F GE+ ++RD T +GFG+V F
Sbjct: 22 MFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS 81
Query: 188 -----------------KAEE--------------------EELRKAFESCGEIDNVRLI 210
+A+ E+++ FE G++D+ L+
Sbjct: 82 RHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLM 141
Query: 211 RDQHTNIGKGFGYVNFK 227
D+ TN +GFG+V F+
Sbjct: 142 FDKTTNRHRGFGFVTFE 158
>gi|156388911|ref|XP_001634736.1| predicted protein [Nematostella vectensis]
gi|156221822|gb|EDO42673.1| predicted protein [Nematostella vectensis]
Length = 313
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 53/96 (55%), Gaps = 2/96 (2%)
Query: 99 AYVRFKNLESVEKALE-MNGHVIDEHTIRVDKALTTTK-SNSHSIFIGNIPFEAEEEELR 156
+V + E +KA++ +NG I ++V + + ++++ NIP + E E R
Sbjct: 49 GFVDYNTTEDAQKAIDKLNGFTIGNKVLKVAFSRPGGDNTKGANLYVCNIPKQLPEAEFR 108
Query: 157 KAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEE 192
KAFE+ G I N RL+RD+ T + KG G+V + + E
Sbjct: 109 KAFEAYGNIVNCRLLRDKSTGLPKGCGFVLYDKKAE 144
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/151 (21%), Positives = 61/151 (40%), Gaps = 53/151 (35%)
Query: 140 SIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEE------- 192
++ + IP + ++ R FE+ ++N +++R + + GFG+V++ E+
Sbjct: 6 TLIVNYIPQDMTDQTFRMMFEAVASLNNCKIVRHKPSGWSYGFGFVDYNTTEDAQKAIDK 65
Query: 193 ----------------------------------------ELRKAFESCGEIDNVRLIRD 212
E RKAFE+ G I N RL+RD
Sbjct: 66 LNGFTIGNKVLKVAFSRPGGDNTKGANLYVCNIPKQLPEAEFRKAFEAYGNIVNCRLLRD 125
Query: 213 QHTNIGKGFGYVNF------KVSFTTLSSIF 237
+ T + KG G+V + + + ++LS F
Sbjct: 126 KSTGLPKGCGFVLYDKKAEAQAAISSLSGTF 156
>gi|148227778|ref|NP_001080390.1| heterogeneous nuclear ribonucleoprotein A2 homolog 1 [Xenopus
laevis]
gi|28302301|gb|AAH46692.1| Hnrpa2b1 protein [Xenopus laevis]
Length = 346
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 55/111 (49%), Gaps = 7/111 (6%)
Query: 84 CIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALT---TTKSNSH- 139
C+ M KR+ +V F + V+ A+ H ID + +A+ + K +H
Sbjct: 38 CVVMRDPASKRSRGFGFVTFSCMNEVDAAMATRPHTIDGRVVEPKRAVAREESAKPGAHV 97
Query: 140 ---SIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 187
+F+G I + EE LR+ FE G+ID++ +I D+ + +GF +V F
Sbjct: 98 TVKKLFVGGIKEDTEEHHLREYFEEYGKIDSIEIITDKQSGKKRGFAFVTF 148
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/138 (23%), Positives = 52/138 (37%), Gaps = 52/138 (37%)
Query: 141 IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKA----------- 189
+FIG + FE EE LR +E G + + ++RD + +GFG+V F
Sbjct: 11 LFIGGLSFETTEESLRNYYEQWGTLTDCVVMRDPASKRSRGFGFVTFSCMNEVDAAMATR 70
Query: 190 -----------------------------------------EEEELRKAFESCGEIDNVR 208
EE LR+ FE G+ID++
Sbjct: 71 PHTIDGRVVEPKRAVAREESAKPGAHVTVKKLFVGGIKEDTEEHHLREYFEEYGKIDSIE 130
Query: 209 LIRDQHTNIGKGFGYVNF 226
+I D+ + +GF +V F
Sbjct: 131 IITDKQSGKKRGFAFVTF 148
>gi|6678940|ref|NP_032655.1| RNA-binding protein Musashi homolog 1 [Mus musculus]
gi|51316207|sp|Q61474.1|MSI1H_MOUSE RecName: Full=RNA-binding protein Musashi homolog 1;
Short=Musashi-1
gi|1434857|dbj|BAA08530.1| RNA-binding protein [Mus musculus]
gi|147897761|gb|AAI40423.1| Musashi homolog 1(Drosophila) [synthetic construct]
gi|148921876|gb|AAI46539.1| Musashi homolog 1(Drosophila) [synthetic construct]
Length = 362
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 58/115 (50%), Gaps = 5/115 (4%)
Query: 82 KACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVD-----KALTTTKS 136
K C+ M KR+ +V F + V+K L + H +D TI +A +
Sbjct: 47 KECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVT 106
Query: 137 NSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEE 191
+ IF+G + E+++ FE G++D+ L+ D+ TN +GFG+V F++E+
Sbjct: 107 RTKKIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESED 161
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/137 (22%), Positives = 54/137 (39%), Gaps = 50/137 (36%)
Query: 141 IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEE--------- 191
+FIG + ++ +E LR+ F GE+ ++RD T +GFG+V F +
Sbjct: 22 MFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS 81
Query: 192 -----------------------------------------EELRKAFESCGEIDNVRLI 210
E+++ FE G++D+ L+
Sbjct: 82 RHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLM 141
Query: 211 RDQHTNIGKGFGYVNFK 227
D+ TN +GFG+V F+
Sbjct: 142 FDKTTNRHRGFGFVTFE 158
>gi|322708692|gb|EFZ00269.1| cutinase negative acting protein [Metarhizium anisopliae ARSEF 23]
Length = 509
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 58/114 (50%), Gaps = 21/114 (18%)
Query: 100 YVRFKNLESVEKALE-MNGHVIDEHTIRVDKALT-TTKSN-------------------S 138
YV F+ E+ KA E M G +D + +D A T +SN S
Sbjct: 305 YVDFETPEAATKAYEAMQGFELDGRPLNLDYANTRPAESNPRDRATDRAKKHGDSVSPES 364
Query: 139 HSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEE 192
++FIGN+PF+ ++E +R+ F E+ +VRL D + KGFGYV+F + E+
Sbjct: 365 ETLFIGNLPFDTDQETVRQFFAEVAEVTSVRLPTDPDSGNLKGFGYVSFNSVED 418
>gi|410913984|ref|XP_003970468.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A/B-like
[Takifugu rubripes]
Length = 319
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 64/116 (55%), Gaps = 2/116 (1%)
Query: 85 IKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKSNSHSIFIG 144
IKM++ R+ ++ FK+ SVEK LE H +D I +AL K +F+G
Sbjct: 95 IKMDQ-GTGRSRGFGFILFKDPASVEKVLEQKEHKLDGRVIDPKRALAMKKEPVKKVFVG 153
Query: 145 NIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFES 200
+ + +E + + FE+ GEI+N+ L +D T +GF ++ +K EE ++KA E+
Sbjct: 154 GLNPDTSKEVIHEYFEAFGEIENIELPQDPKTEKRRGFVFITYK-EEACVKKALEN 208
Score = 36.6 bits (83), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 27/141 (19%), Positives = 57/141 (40%), Gaps = 45/141 (31%)
Query: 132 TTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK--- 188
+ + ++ +F+G + ++ +++L+ F GE+ + + DQ T +GFG++ FK
Sbjct: 57 SKDEEDAGKMFVGGLSWDTSKKDLKDYFNKFGEVTDCTIKMDQGTGRSRGFGFILFKDPA 116
Query: 189 ------------------------------------------AEEEELRKAFESCGEIDN 206
+E + + FE+ GEI+N
Sbjct: 117 SVEKVLEQKEHKLDGRVIDPKRALAMKKEPVKKVFVGGLNPDTSKEVIHEYFEAFGEIEN 176
Query: 207 VRLIRDQHTNIGKGFGYVNFK 227
+ L +D T +GF ++ +K
Sbjct: 177 IELPQDPKTEKRRGFVFITYK 197
>gi|296486392|tpg|DAA28505.1| TPA: heterogeneous nuclear ribonucleoprotein D-like [Bos taurus]
Length = 420
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/200 (24%), Positives = 86/200 (43%), Gaps = 30/200 (15%)
Query: 13 IPTQNRNLMSKLKVFLNIWKMALKLKMNPSLTKSKNHAL-----------SSVTSMFKPY 61
+P + M + + NI + A K+N S + + + +T +
Sbjct: 112 LPADHSAAMEDMNEYSNIEEFAEGSKINASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRF 171
Query: 62 GEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVID 121
GEV ++ PV R+ +V FK+ SV+K LE+ H +D
Sbjct: 172 GEVVDCTIKTDPVTG-----------------RSRGFGFVLFKDAASVDKVLELKEHKLD 214
Query: 122 EHTIRVDKALT-TTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGK 180
I +A K +F+G + + EE++++ F + GEI+N+ L D TN +
Sbjct: 215 GKLIDPKRAKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERR 274
Query: 181 GFGYVNFKAEEEELRKAFES 200
GF ++ + +EE ++K ES
Sbjct: 275 GFCFITY-TDEEPVKKLLES 293
>gi|296485784|tpg|DAA27899.1| TPA: heterogeneous nuclear ribonucleoprotein A2/B1-like [Bos
taurus]
Length = 341
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 53/111 (47%), Gaps = 7/111 (6%)
Query: 84 CIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKSNSHS--- 140
C+ + +R+ +V F ++ V+ A+ H ID + +A+ S
Sbjct: 50 CVVLRDFASQRSRGCGFVTFSSVTEVDAAMAARPHSIDGRVLEPRRAIPREASGQRGAHW 109
Query: 141 ----IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 187
+F+G I + EE LR+ FE G+ID + +I D+ + +GFG+V F
Sbjct: 110 TLKKLFVGGIKEDTEEHHLREYFEKYGKIDAIEIITDRQSGRKRGFGFVTF 160
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/138 (23%), Positives = 54/138 (39%), Gaps = 52/138 (37%)
Query: 141 IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKA----------- 189
+FIG + F+ EE LRK ++ GE+ + ++RD + +G G+V F +
Sbjct: 23 LFIGGLSFQTTEESLRKYYQQWGELTDCVVLRDFASQRSRGCGFVTFSSVTEVDAAMAAR 82
Query: 190 -----------------------------------------EEEELRKAFESCGEIDNVR 208
EE LR+ FE G+ID +
Sbjct: 83 PHSIDGRVLEPRRAIPREASGQRGAHWTLKKLFVGGIKEDTEEHHLREYFEKYGKIDAIE 142
Query: 209 LIRDQHTNIGKGFGYVNF 226
+I D+ + +GFG+V F
Sbjct: 143 IITDRQSGRKRGFGFVTF 160
>gi|432094975|gb|ELK26383.1| Putative RNA-binding protein 19 [Myotis davidii]
Length = 966
Score = 58.5 bits (140), Expect = 2e-06, Method: Composition-based stats.
Identities = 37/119 (31%), Positives = 63/119 (52%), Gaps = 18/119 (15%)
Query: 99 AYVRFKNLESVEKALEM--NGHVIDEHTIRV-------DKALTTT-------KSNSHSIF 142
+V ++ E +KAL+ GHV+D+H + V ALT+ K + I
Sbjct: 782 GFVEYRKPEQAQKALKQLXXGHVVDDHKLEVRISERATKPALTSARKKQVPRKQTTSKIL 841
Query: 143 IGNIPFEAEEEELRKAFESCGEIDNVRLIRDQH-TNIGKGFGYVNFKAEEEELRKAFES 200
+ NIPF+A E+R+ F + GE+ VRL + T +GFG+V+F +++ ++AF +
Sbjct: 842 VRNIPFQAHSREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFLTKQDA-KRAFNA 899
Score = 44.3 bits (103), Expect = 0.042, Method: Composition-based stats.
Identities = 48/189 (25%), Positives = 76/189 (40%), Gaps = 36/189 (19%)
Query: 66 TVRFRSVP-------VADITLPRKACIKMNKVHEKRTNMNAYV--RFKNLESVEKALE-- 114
TV+ R P V + P K + + V N YV F + E V+KAL+
Sbjct: 301 TVKLRGAPFNVTEKNVTEFLAPLKP-VAIRIVRNAHGNKTGYVFVDFSSEEEVKKALKCN 359
Query: 115 ---MNGHVID---EHTIRVDKALTTTKS------------------NSHSIFIGNIPFEA 150
M G I+ E T+ V K + S +S +F+ N+P+ +
Sbjct: 360 REYMGGRYIEVFREKTVPVAKGPPKSSSKPWQGRTLGEDEEEEDLADSGRLFVRNLPYTS 419
Query: 151 EEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLI 210
EE+L K F G + + D T KGF +V+F E ++ E G++ R++
Sbjct: 420 TEEDLEKIFSKYGPLSELHYPIDSLTKKPKGFAFVSFMFPEHAVKAYAEVDGQVFQGRML 479
Query: 211 RDQHTNIGK 219
+ I K
Sbjct: 480 HVLPSTIKK 488
>gi|22330574|ref|NP_177325.2| cleavage stimulating factor 64 [Arabidopsis thaliana]
gi|7239507|gb|AAF43233.1|AC012654_17 Contains similarity to the polyadenylation factor 64 kDa subunit
from Xenopus laevis gb|U17394; It contains RNA
recognition motif PF|00076. ESTs gb|AI993960 and T42211
come from this gene [Arabidopsis thaliana]
gi|110738120|dbj|BAF00992.1| cleavage stimulation factor like protein [Arabidopsis thaliana]
gi|332197113|gb|AEE35234.1| cleavage stimulating factor 64 [Arabidopsis thaliana]
Length = 461
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 51/87 (58%), Gaps = 9/87 (10%)
Query: 131 LTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNV---RLIRDQHTNIGKGFGYVNF 187
+ ++ S +F+GNIP++A EE+LR E CGE+ V RL+ D+ T KG+G+ +
Sbjct: 1 MASSSSQRRCVFVGNIPYDATEEQLR---EICGEVGPVVSFRLVTDRETGKPKGYGFCEY 57
Query: 188 KAEEEEL--RKAFESCGEIDNVRLIRD 212
K EE L R+ +S EI+ +L D
Sbjct: 58 KDEETALSARRNLQSY-EINGRQLRVD 83
Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 6/57 (10%)
Query: 182 FGYVNFKAEEEELRKAFESCGEIDNV---RLIRDQHTNIGKGFGYVNFKVSFTTLSS 235
G + + A EE+LR E CGE+ V RL+ D+ T KG+G+ +K T LS+
Sbjct: 13 VGNIPYDATEEQLR---EICGEVGPVVSFRLVTDRETGKPKGYGFCEYKDEETALSA 66
>gi|154799958|dbj|BAF75024.1| Musashi-1c [Cynops pyrrhogaster]
Length = 342
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 58/115 (50%), Gaps = 5/115 (4%)
Query: 82 KACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVD-----KALTTTKS 136
K C+ M KR+ +V F + V+K L + H +D TI +A +
Sbjct: 47 KECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVT 106
Query: 137 NSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEE 191
+ IF+G + E++++ FE G++D+ L+ D+ TN +GFG+V F+ E+
Sbjct: 107 RTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFEVED 161
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/138 (23%), Positives = 56/138 (40%), Gaps = 50/138 (36%)
Query: 141 IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEE--------- 191
+FIG + ++ +E LR+ F GE+ ++RD T +GFG+V F +
Sbjct: 22 MFIGGLSWQTTQEGLREYFGQYGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS 81
Query: 192 -----------------------------------------EELRKAFESCGEIDNVRLI 210
E++++ FE G++D+ L+
Sbjct: 82 RHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLM 141
Query: 211 RDQHTNIGKGFGYVNFKV 228
D+ TN +GFG+V F+V
Sbjct: 142 FDKTTNRHRGFGFVTFEV 159
>gi|144226849|ref|NP_001077194.1| heterogeneous nuclear ribonucleoprotein D-like [Bos taurus]
gi|134024605|gb|AAI34449.1| HNRPDL protein [Bos taurus]
Length = 420
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/200 (24%), Positives = 86/200 (43%), Gaps = 30/200 (15%)
Query: 13 IPTQNRNLMSKLKVFLNIWKMALKLKMNPSLTKSKNHAL-----------SSVTSMFKPY 61
+P + M + + NI + A K+N S + + + +T +
Sbjct: 112 LPADHSAAMEDMNEYSNIEEFAEGSKINASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRF 171
Query: 62 GEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVID 121
GEV ++ PV R+ +V FK+ SV+K LE+ H +D
Sbjct: 172 GEVVDCTIKTDPVTG-----------------RSRGFGFVLFKDAASVDKVLELKEHKLD 214
Query: 122 EHTIRVDKALT-TTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGK 180
I +A K +F+G + + EE++++ F + GEI+N+ L D TN +
Sbjct: 215 GKLIDPKRAKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERR 274
Query: 181 GFGYVNFKAEEEELRKAFES 200
GF ++ + +EE ++K ES
Sbjct: 275 GFCFITY-TDEEPVKKLLES 293
>gi|26350925|dbj|BAC39099.1| unnamed protein product [Mus musculus]
Length = 301
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 58/115 (50%), Gaps = 5/115 (4%)
Query: 82 KACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVD-----KALTTTKS 136
K C+ M KR+ +V F + V+K L + H +D TI +A +
Sbjct: 26 KECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVT 85
Query: 137 NSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEE 191
+ IF+G + E+++ FE G++D+ L+ D+ TN +GFG+V F++E+
Sbjct: 86 RTKKIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESED 140
Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 31/137 (22%), Positives = 54/137 (39%), Gaps = 50/137 (36%)
Query: 141 IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEE--------- 191
+FIG + ++ +E LR+ F GE+ ++RD T +GFG+V F +
Sbjct: 1 MFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS 60
Query: 192 -----------------------------------------EELRKAFESCGEIDNVRLI 210
E+++ FE G++D+ L+
Sbjct: 61 RHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLM 120
Query: 211 RDQHTNIGKGFGYVNFK 227
D+ TN +GFG+V F+
Sbjct: 121 FDKTTNRHRGFGFVTFE 137
>gi|226478812|emb|CAX72901.1| RNA-binding protein Musashi homolog 2 [Schistosoma japonicum]
Length = 345
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 55/106 (51%), Gaps = 7/106 (6%)
Query: 93 KRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKAL-------TTTKSNSHSIFIGN 145
KR+ +V F + VEK LE H++D I A+ T + + +FIG
Sbjct: 116 KRSRGFGFVTFSDPMCVEKVLEAAPHILDFKKIDPKLAVPRKSGQNTKISTKTKRVFIGG 175
Query: 146 IPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEE 191
+ + EEL + F G++++ L+ D+ TN +GFG+V F++EE
Sbjct: 176 VATQTTNEELSEYFSQFGKLESCELMMDKSTNRHRGFGFVTFESEE 221
>gi|195135455|ref|XP_002012148.1| GI16592 [Drosophila mojavensis]
gi|193918412|gb|EDW17279.1| GI16592 [Drosophila mojavensis]
Length = 469
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 68/158 (43%), Gaps = 38/158 (24%)
Query: 46 SKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMN---AYVR 102
+K H F PYGE+E DI + V +K T N AYV+
Sbjct: 33 NKAHTEEDFREAFSPYGEIE----------DIWV----------VKDKHTQENKGIAYVK 72
Query: 103 FKNLESVEKALE-MNGHVIDEHTIRVDKALTTTKSNSHS------------IFIGNIPFE 149
F KA E MNG I + T R K L N S +FI IP
Sbjct: 73 FSKTSDAAKAQEQMNGKTIGK-TDRTLKVLVAANRNQGSNKSENEQEKYVRLFI-VIPKT 130
Query: 150 AEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 187
A E+++R F GE++NV ++R+++ KGFGYV F
Sbjct: 131 ATEDDIRDEFSQWGEVENVTIVREKNNGNPKGFGYVRF 168
>gi|1710623|sp|P51989.1|RO21_XENLA RecName: Full=Heterogeneous nuclear ribonucleoprotein A2 homolog 1;
AltName: Full=hnRNP A2(A)
gi|214741|gb|AAA49948.1| ribonucleoprotein [Xenopus laevis]
Length = 346
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 55/111 (49%), Gaps = 7/111 (6%)
Query: 84 CIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALT---TTKSNSH- 139
C+ M KR+ +V F + V+ A+ H ID + +A+ + K +H
Sbjct: 38 CVVMRDPASKRSRGFGFVTFSCMNEVDAAMATRPHTIDGRVVEPKRAVAREESAKPGAHV 97
Query: 140 ---SIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 187
+F+G I + EE LR+ FE G+ID++ +I D+ + +GF +V F
Sbjct: 98 TVKKLFVGGIKEDTEEHHLREYFEEYGKIDSIEIITDKQSGKKRGFAFVTF 148
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/138 (23%), Positives = 52/138 (37%), Gaps = 52/138 (37%)
Query: 141 IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKA----------- 189
+FIG + FE EE LR +E G + + ++RD + +GFG+V F
Sbjct: 11 LFIGGLSFETTEESLRNYYEQWGTLTDCVVMRDPASKRSRGFGFVTFSCMNEVDAAMATR 70
Query: 190 -----------------------------------------EEEELRKAFESCGEIDNVR 208
EE LR+ FE G+ID++
Sbjct: 71 PHTIDGRVVEPKRAVAREESAKPGAHVTVKKLFVGGIKEDTEEHHLREYFEEYGKIDSIE 130
Query: 209 LIRDQHTNIGKGFGYVNF 226
+I D+ + +GF +V F
Sbjct: 131 IITDKQSGKKRGFAFVTF 148
>gi|301753349|ref|XP_002912535.1| PREDICTED: hypothetical protein LOC100472152 [Ailuropoda
melanoleuca]
Length = 642
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 60/111 (54%), Gaps = 10/111 (9%)
Query: 94 RTNMNAYVRFKNLESVEKALE-----MNGHVIDEHTIRVDKALTTTKSNSHSIFIGNIPF 148
R+ +V FK ESV+K ++ +NG VID + K TK IF+G +
Sbjct: 423 RSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMK----TKEPVKKIFVGGLSP 478
Query: 149 EAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
+ EE++R+ F GE++++ L D TN +GF ++ FK EEE ++K E
Sbjct: 479 DTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFK-EEEPVKKIME 528
Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 31/142 (21%), Positives = 54/142 (38%), Gaps = 46/142 (32%)
Query: 132 TTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK--- 188
T + +FIG + ++ +++L+ F GE+ + L D T +GFG+V FK
Sbjct: 377 ATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESE 436
Query: 189 -------------------------------------------AEEEELRKAFESCGEID 205
EE++R+ F GE++
Sbjct: 437 SVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVE 496
Query: 206 NVRLIRDQHTNIGKGFGYVNFK 227
++ L D TN +GF ++ FK
Sbjct: 497 SIELPMDNKTNKRRGFCFITFK 518
>gi|508270|gb|AAA64654.1| A+U-rich RNA-binding protein [Mus musculus]
Length = 269
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 61/111 (54%), Gaps = 10/111 (9%)
Query: 94 RTNMNAYVRFKNLESVEKALE-----MNGHVIDEHTIRVDKALTTTKSNSHSIFIGNIPF 148
R+ +V FK ESV+K ++ +NG VID + K TK IF+G +
Sbjct: 105 RSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMK----TKEPVKKIFVGGLSP 160
Query: 149 EAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
+ EE++R+ F GE++++ L D+ TN +GF ++ FK EEE ++K E
Sbjct: 161 DTPEEKIREYFGGFGEVESIELPMDKKTNKRRGFCFITFK-EEEPVKKIME 210
Score = 40.0 bits (92), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 30/133 (22%), Positives = 53/133 (39%), Gaps = 46/133 (34%)
Query: 141 IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK------------ 188
+FIG + ++ +++L+ F GE+ + L D T +GFG+V FK
Sbjct: 68 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 127
Query: 189 ----------------------------------AEEEELRKAFESCGEIDNVRLIRDQH 214
EE++R+ F GE++++ L D+
Sbjct: 128 EHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDKK 187
Query: 215 TNIGKGFGYVNFK 227
TN +GF ++ FK
Sbjct: 188 TNKRRGFCFITFK 200
>gi|325303220|tpg|DAA34696.1| TPA_inf: apoptosis-promoting RNA-binding protein TIA-1/TIAR
[Amblyomma variegatum]
Length = 374
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 60/112 (53%), Gaps = 9/112 (8%)
Query: 90 VHEKRTNMNAYVRFKNLESVEKAL-EMNGHVIDEHTIRVDKALT---TTK---SNSHSIF 142
+HE + +V F + +S AL MN + ++V+ A + T K S H IF
Sbjct: 10 IHEPGNDPYCFVEFSDHQSAASALLAMNKRLCFGKEMKVNWATSPGNTPKLDTSKHHHIF 69
Query: 143 IGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF--KAEEE 192
+G++ E E +LR AF G+I + R++RD T KG+G+V+F KA+ E
Sbjct: 70 VGDLSPEIETTQLRDAFAPFGDISDCRVVRDPQTLKSKGYGFVSFVKKADAE 121
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 24/37 (64%)
Query: 190 EEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 226
E +LR AF G+I + R++RD T KG+G+V+F
Sbjct: 78 ETTQLRDAFAPFGDISDCRVVRDPQTLKSKGYGFVSF 114
>gi|258575439|ref|XP_002541901.1| predicted protein [Uncinocarpus reesii 1704]
gi|237902167|gb|EEP76568.1| predicted protein [Uncinocarpus reesii 1704]
Length = 503
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 45/74 (60%), Gaps = 3/74 (4%)
Query: 138 SHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKA 197
S ++F+GN+ + +EE LR FES GE+ VR++ D+ + +GFGYV F E+ KA
Sbjct: 264 SANLFVGNLSWNVDEEWLRSEFESFGELSGVRIVTDRDSGRSRGFGYVEF-TNAEDAAKA 322
Query: 198 FES--CGEIDNVRL 209
FE+ E+D L
Sbjct: 323 FEAKKGAELDGRPL 336
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 48/120 (40%), Gaps = 21/120 (17%)
Query: 94 RTNMNAYVRFKNLESVEKALEMN---------------------GHVIDEHTIRVDKALT 132
R+ YV F N E KA E G D R
Sbjct: 304 RSRGFGYVEFTNAEDAAKAFEAKKGAELDGRPLNLDYANARQNAGGAKDRSQARAKSFGD 363
Query: 133 TTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEE 192
T S ++FIGNI F A+E +++ F S G I +RL D + KGFGY+ F + +E
Sbjct: 364 QTSPESDTLFIGNISFGADENAIQETFSSYGTISGIRLPTDPESGRPKGFGYIQFSSVDE 423
Score = 45.4 bits (106), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 29/44 (65%)
Query: 183 GYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 226
G +++ +EE LR FES GE+ VR++ D+ + +GFGYV F
Sbjct: 270 GNLSWNVDEEWLRSEFESFGELSGVRIVTDRDSGRSRGFGYVEF 313
Score = 41.2 bits (95), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 26/44 (59%)
Query: 183 GYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 226
G ++F A+E +++ F S G I +RL D + KGFGY+ F
Sbjct: 375 GNISFGADENAIQETFSSYGTISGIRLPTDPESGRPKGFGYIQF 418
>gi|110756942|ref|XP_395357.3| PREDICTED: nucleolysin TIAR [Apis mellifera]
gi|340713958|ref|XP_003395500.1| PREDICTED: nucleolysin TIAR-like [Bombus terrestris]
gi|350421173|ref|XP_003492759.1| PREDICTED: nucleolysin TIAR-like [Bombus impatiens]
gi|380025693|ref|XP_003696603.1| PREDICTED: nucleolysin TIAR-like [Apis florea]
Length = 392
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 63/131 (48%), Gaps = 11/131 (8%)
Query: 90 VHEKRTNMNAYVRFKNLESVEKALE-MNGHVIDEHTIRVDKALTTTK------SNSHSIF 142
+ E + A+V F N + AL MN ++V+ A + SN H IF
Sbjct: 40 IREPGNDPYAFVEFTNHQCAATALAAMNKRSFLNKEMKVNWATSPGNQPKLDTSNHHHIF 99
Query: 143 IGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF--KAEEEELRKAFES 200
+G++ E E + L++AF GEI N R++RD T KG+ +V+F K+E E A
Sbjct: 100 VGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTMKSKGYAFVSFVKKSEAEAAIAAMN- 158
Query: 201 CGEIDNVRLIR 211
G+ R IR
Sbjct: 159 -GQWLGSRSIR 168
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 24/37 (64%)
Query: 190 EEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 226
E + L++AF GEI N R++RD T KG+ +V+F
Sbjct: 108 ETQTLKEAFAPFGEISNCRIVRDPQTMKSKGYAFVSF 144
>gi|427789733|gb|JAA60318.1| Putative rox8 [Rhipicephalus pulchellus]
Length = 406
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 60/112 (53%), Gaps = 9/112 (8%)
Query: 90 VHEKRTNMNAYVRFKNLESVEKAL-EMNGHVIDEHTIRVDKALT---TTK---SNSHSIF 142
+HE + +V F + +S AL MN + ++V+ A + T K S H IF
Sbjct: 45 IHEPGNDPYCFVEFSDHQSAASALLAMNKRLCFGKEMKVNWATSPGNTPKLDTSKHHHIF 104
Query: 143 IGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF--KAEEE 192
+G++ E E +LR AF G+I + R++RD T KG+G+V+F KA+ E
Sbjct: 105 VGDLSPEIETTQLRDAFAPFGDISDCRVVRDPQTLKSKGYGFVSFVKKADAE 156
Score = 38.9 bits (89), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 24/37 (64%)
Query: 190 EEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 226
E +LR AF G+I + R++RD T KG+G+V+F
Sbjct: 113 ETTQLRDAFAPFGDISDCRVVRDPQTLKSKGYGFVSF 149
>gi|21591633|gb|AAM64164.1|AF515695_1 cleavage stimulation factor 64 [Arabidopsis thaliana]
Length = 461
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 51/87 (58%), Gaps = 9/87 (10%)
Query: 131 LTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNV---RLIRDQHTNIGKGFGYVNF 187
+ ++ S +F+GNIP++A EE+LR E CGE+ V RL+ D+ T KG+G+ +
Sbjct: 1 MASSSSQRRCVFVGNIPYDATEEQLR---EICGEVGPVVSFRLVTDRETGKPKGYGFCEY 57
Query: 188 KAEEEEL--RKAFESCGEIDNVRLIRD 212
K EE L R+ +S EI+ +L D
Sbjct: 58 KDEETALSARRNLQSY-EINGRQLRVD 83
Score = 42.4 bits (98), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 6/57 (10%)
Query: 182 FGYVNFKAEEEELRKAFESCGEIDNV---RLIRDQHTNIGKGFGYVNFKVSFTTLSS 235
G + + A EE+LR E CGE+ V RL+ D+ T KG+G+ +K T LS+
Sbjct: 13 VGNIPYDATEEQLR---EICGEVGPVVSFRLVTDRETGKPKGYGFCEYKDEETALSA 66
>gi|355687288|gb|EHH25872.1| Heterogeneous nuclear ribonucleoprotein D-like protein, partial
[Macaca mulatta]
Length = 309
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 85/199 (42%), Gaps = 30/199 (15%)
Query: 14 PTQNRNLMSKLKVFLNIWKMALKLKMNPSLTKSKNHAL-----------SSVTSMFKPYG 62
P + M + + NI + A K+N S + + + +T +G
Sbjct: 2 PANSSATMEDMNEYSNIEEFAEGSKINASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFG 61
Query: 63 EVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDE 122
EV ++ PV R+ +V FK+ SV+K LE+ H +D
Sbjct: 62 EVVDCTIKTDPVT-----------------GRSRGFGFVLFKDAASVDKVLELKEHKLDG 104
Query: 123 HTIRVDKALT-TTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKG 181
I +A K +F+G + + EE++++ F + GEI+N+ L D TN +G
Sbjct: 105 KLIDPKRAKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRG 164
Query: 182 FGYVNFKAEEEELRKAFES 200
F ++ + +EE ++K ES
Sbjct: 165 FCFITY-TDEEPVKKLLES 182
>gi|390468249|ref|XP_002753088.2| PREDICTED: probable RNA-binding protein 19 [Callithrix jacchus]
Length = 1066
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 59/113 (52%), Gaps = 16/113 (14%)
Query: 99 AYVRFKNLESVEKAL-EMNGHVIDEHTIRV-------DKALTTT-------KSNSHSIFI 143
+V ++ E +KAL ++ GH++D H + V A+T+ K + I +
Sbjct: 883 GFVEYRKPEQAQKALKQLQGHIVDGHKLEVRISERATKPAVTSARKKQIPRKQTTSKILV 942
Query: 144 GNIPFEAEEEELRKAFESCGEIDNVRLIRD-QHTNIGKGFGYVNFKAEEEELR 195
NIPF+A E+R+ F + GE+ VRL + T +GFG+V+F +++ R
Sbjct: 943 RNIPFQAHSREIRELFSTFGELKTVRLPKKMTGTGTHRGFGFVDFLTKQDAKR 995
Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 52/208 (25%), Positives = 80/208 (38%), Gaps = 41/208 (19%)
Query: 43 LTKSKNHALSSVTSMFKPYGEVE-----TVRFRSVP-------VADITLPRKACIKMNKV 90
+ K L + KP + E TV+ R P V + P K + + V
Sbjct: 373 MPAGKKRPLDTRAETEKPANQKEPTTCHTVKLRGAPFNVTEKNVMEFLAPLKP-VAIRIV 431
Query: 91 HEKRTNMNAY--VRFKNLESVEKALEMNGHVIDEHTIRV--DKALTTTK----------- 135
N Y V F N E V+KAL+ N + I V +K +TTTK
Sbjct: 432 RNAHGNKTGYIFVDFSNEEEVKKALKCNREYMGGRYIEVFREKNVTTTKGLPKNSAKSWQ 491
Query: 136 -------------SNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGF 182
+ S +F+ N+P+ + EE+L K F G + + D T KGF
Sbjct: 492 GRMLGENEEEEDLAESGRLFVRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGF 551
Query: 183 GYVNFKAEEEELRKAFESCGEIDNVRLI 210
+V F E ++ E G++ R++
Sbjct: 552 AFVTFMFPEHAVKAYSEVDGQVFQGRML 579
>gi|259648115|dbj|BAI40365.1| TIA-1 homologue [Bombyx mori]
Length = 402
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 66/131 (50%), Gaps = 11/131 (8%)
Query: 90 VHEKRTNMNAYVRFKNLESVEKALE-MNGHVIDEHTIRVDKALT------TTKSNSHSIF 142
+ E + A++ F + AL MN V+ + ++V+ A + T SN H IF
Sbjct: 40 IREPGNDPYAFLEFTCHTAAVTALAAMNKRVVLDKEMKVNWATSPGNQPKTDTSNHHHIF 99
Query: 143 IGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF--KAEEEELRKAFES 200
+G++ E E LR+AF GEI N R++RD T KG+ +V+F KA+ E +A
Sbjct: 100 VGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMN- 158
Query: 201 CGEIDNVRLIR 211
G+ R IR
Sbjct: 159 -GQWLGSRSIR 168
>gi|71896731|ref|NP_001026314.1| heterogeneous nuclear ribonucleoprotein D0 [Gallus gallus]
gi|326918726|ref|XP_003205639.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D0-like
[Meleagris gallopavo]
gi|53135954|emb|CAG32472.1| hypothetical protein RCJMB04_26e18 [Gallus gallus]
Length = 257
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 61/111 (54%), Gaps = 10/111 (9%)
Query: 94 RTNMNAYVRFKNLESVEKALE-----MNGHVIDEHTIRVDKALTTTKSNSHSIFIGNIPF 148
R+ +V FK ESV+K ++ +NG VID + K TK IF+G +
Sbjct: 38 RSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMK----TKEPVKKIFVGGLSP 93
Query: 149 EAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
+ EE++R+ F + GE++++ L D TN +GF ++ FK EEE ++K E
Sbjct: 94 DTPEEKIREYFGAFGEVESIELPMDNKTNKRRGFCFITFK-EEEPVKKIME 143
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/133 (22%), Positives = 53/133 (39%), Gaps = 46/133 (34%)
Query: 141 IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK------------ 188
+FIG + ++ +++L+ F GE+ + L D T +GFG+V FK
Sbjct: 1 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 60
Query: 189 ----------------------------------AEEEELRKAFESCGEIDNVRLIRDQH 214
EE++R+ F + GE++++ L D
Sbjct: 61 EHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGAFGEVESIELPMDNK 120
Query: 215 TNIGKGFGYVNFK 227
TN +GF ++ FK
Sbjct: 121 TNKRRGFCFITFK 133
>gi|123408784|ref|XP_001303266.1| Polyadenylate-binding protein [Trichomonas vaginalis G3]
gi|121884631|gb|EAX90336.1| Polyadenylate-binding protein, putative [Trichomonas vaginalis G3]
Length = 461
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 60/104 (57%), Gaps = 8/104 (7%)
Query: 99 AYVRFKNLESVEKA-LEMNGHVIDEHTIRVDKALTTTKSNSH----SIFIGNIPFEA--E 151
Y++F+N E+ EKA LE+ I+ I++D ++ N +++I +P +
Sbjct: 138 GYIQFRNPENAEKAKLELADASINGKPIKIDNYNRKSRRNPDEDFTNVYIKPLPVDQVKT 197
Query: 152 EEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELR 195
+E+LRK FE GEI N L +D++ N KGFG+ NFK E+ ++
Sbjct: 198 DEDLRKIFEPFGEIQNPSLKKDENGN-SKGFGFCNFKLHEDAVK 240
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 79/198 (39%), Gaps = 62/198 (31%)
Query: 89 KVHEKRTNMNAYVRFKNLESVEKALE-MNGHVIDEHTIRVDKALTTTK----SNSHSIFI 143
K H+ + A+V F E KA++ +N +D IR+ T TK S S+FI
Sbjct: 41 KKHKTLDSSFAFVTFATHEQAAKAMKNLNYTKLDGRPIRILWCDTETKAIIKSGRGSLFI 100
Query: 144 GNIPFEAEEEELRKAFESCGEIDNVRL-IRDQHTNIGKGFGYVNFKAEE----------- 191
+ E +L AF + GEI + ++ + D + +G+GY+ F+ E
Sbjct: 101 NGLDESIEVSQLHDAFSNFGEIISCKIPLTDGKS---RGYGYIQFRNPENAEKAKLELAD 157
Query: 192 -----------------------------------------EELRKAFESCGEIDNVRLI 210
E+LRK FE GEI N L
Sbjct: 158 ASINGKPIKIDNYNRKSRRNPDEDFTNVYIKPLPVDQVKTDEDLRKIFEPFGEIQNPSLK 217
Query: 211 RDQHTNIGKGFGYVNFKV 228
+D++ N KGFG+ NFK+
Sbjct: 218 KDENGN-SKGFGFCNFKL 234
Score = 36.6 bits (83), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 42/73 (57%), Gaps = 2/73 (2%)
Query: 120 IDEHTIRVDKALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIG 179
I +HT +V+K T N ++++ + + ++E ++ F GEI+ ++ R T
Sbjct: 271 IKKHTEKVEKFAEET--NGRNLYVKSFSKDVTDKEFQEYFSKFGEIELFKIERVPETKES 328
Query: 180 KGFGYVNFKAEEE 192
KGFG+V +K++E+
Sbjct: 329 KGFGFVLYKSKED 341
>gi|238508431|ref|XP_002385409.1| RNA binding protein, putative [Aspergillus flavus NRRL3357]
gi|317157950|ref|XP_001826678.2| nucleolar protein 12 [Aspergillus oryzae RIB40]
gi|220688928|gb|EED45280.1| RNA binding protein, putative [Aspergillus flavus NRRL3357]
Length = 527
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 101/207 (48%), Gaps = 16/207 (7%)
Query: 26 VFL-NIWKMALKLK-MNPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADI-TLPRK 82
VFL N+ A+K K +L K LS++ P+ +VE++RFRS A +P++
Sbjct: 197 VFLSNVSNEAIKSKSAKKTLLKHFESFLSTLPESTGPH-KVESIRFRSTAFASGGKIPKR 255
Query: 83 ACIKMNKVHEKRT-NMNAYVRFKNLESVEKA-LEMNGHVIDEHTIRVDK-ALTTTKSNSH 139
A +V ++ T + NAY+ + +++ KA + +NG V+ + +RVD A N
Sbjct: 256 AAFAKREVLDETTPSTNAYIVYSTVQAARKAPVALNGTVVLDRHVRVDSVAHPAPVDNKR 315
Query: 140 SIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
+F+GN+ F +E + + + + + F K +++ R+
Sbjct: 316 CVFVGNLNFVDQEGNADDEEKPKKKKAPADV----EEGLWRTFNAHTSKPKDQATRR--- 368
Query: 200 SCGEIDNVRLIRDQHTNIGKGFGYVNF 226
G +++VR++RD T + KGF YV F
Sbjct: 369 --GNVESVRVVRDSVTRVSKGFAYVQF 393
>gi|14110407|ref|NP_112740.1| heterogeneous nuclear ribonucleoprotein D-like isoform a [Homo
sapiens]
gi|114593989|ref|XP_001142372.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D-like isoform 4
[Pan troglodytes]
gi|332819433|ref|XP_003310370.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D-like [Pan
troglodytes]
gi|397524661|ref|XP_003832307.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D-like isoform 1
[Pan paniscus]
gi|397524663|ref|XP_003832308.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D-like isoform 2
[Pan paniscus]
gi|74762096|sp|O14979.3|HNRDL_HUMAN RecName: Full=Heterogeneous nuclear ribonucleoprotein D-like;
Short=hnRNP D-like; Short=hnRNP DL; AltName:
Full=AU-rich element RNA-binding factor; AltName:
Full=JKT41-binding protein; AltName: Full=Protein laAUF1
gi|4512254|dbj|BAA75239.1| JKTBP2 [Homo sapiens]
gi|4512257|dbj|BAA75241.1| JKTBP2 [Homo sapiens]
gi|15079822|gb|AAH11714.1| Heterogeneous nuclear ribonucleoprotein D-like [Homo sapiens]
gi|47115183|emb|CAG28551.1| HNRPDL [Homo sapiens]
gi|47938369|gb|AAH71944.1| Heterogeneous nuclear ribonucleoprotein D-like [Homo sapiens]
gi|63990763|gb|AAY40914.1| unknown [Homo sapiens]
gi|119626290|gb|EAX05885.1| heterogeneous nuclear ribonucleoprotein D-like, isoform CRA_a [Homo
sapiens]
gi|119626291|gb|EAX05886.1| heterogeneous nuclear ribonucleoprotein D-like, isoform CRA_a [Homo
sapiens]
gi|119626292|gb|EAX05887.1| heterogeneous nuclear ribonucleoprotein D-like, isoform CRA_a [Homo
sapiens]
gi|119626293|gb|EAX05888.1| heterogeneous nuclear ribonucleoprotein D-like, isoform CRA_a [Homo
sapiens]
gi|119626294|gb|EAX05889.1| heterogeneous nuclear ribonucleoprotein D-like, isoform CRA_a [Homo
sapiens]
gi|119626296|gb|EAX05891.1| heterogeneous nuclear ribonucleoprotein D-like, isoform CRA_a [Homo
sapiens]
gi|123987254|gb|ABM83797.1| heterogeneous nuclear ribonucleoprotein D-like [synthetic
construct]
gi|123999068|gb|ABM87118.1| heterogeneous nuclear ribonucleoprotein D-like [synthetic
construct]
gi|410248290|gb|JAA12112.1| heterogeneous nuclear ribonucleoprotein D-like [Pan troglodytes]
gi|410296200|gb|JAA26700.1| heterogeneous nuclear ribonucleoprotein D-like [Pan troglodytes]
gi|410339827|gb|JAA38860.1| heterogeneous nuclear ribonucleoprotein D-like [Pan troglodytes]
gi|410339829|gb|JAA38861.1| heterogeneous nuclear ribonucleoprotein D-like [Pan troglodytes]
gi|410339831|gb|JAA38862.1| heterogeneous nuclear ribonucleoprotein D-like [Pan troglodytes]
Length = 420
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 59/108 (54%), Gaps = 2/108 (1%)
Query: 94 RTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALT-TTKSNSHSIFIGNIPFEAEE 152
R+ +V FK+ SV+K LE+ H +D I +A K +F+G + + E
Sbjct: 187 RSRGFGFVLFKDAASVDKVLELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDTSE 246
Query: 153 EELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFES 200
E++++ F + GEI+N+ L D TN +GF ++ + +EE ++K ES
Sbjct: 247 EQIKEYFGAFGEIENIELPMDTKTNERRGFCFITY-TDEEPVKKLLES 293
>gi|395834185|ref|XP_003790092.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D-like isoform 1
[Otolemur garnettii]
gi|395834187|ref|XP_003790093.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D-like isoform 2
[Otolemur garnettii]
Length = 418
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 59/108 (54%), Gaps = 2/108 (1%)
Query: 94 RTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALT-TTKSNSHSIFIGNIPFEAEE 152
R+ +V FK+ SV+K LE+ H +D I +A K +F+G + + E
Sbjct: 187 RSRGFGFVLFKDAASVDKVLELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDTSE 246
Query: 153 EELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFES 200
E++++ F + GEI+N+ L D TN +GF ++ + +EE ++K ES
Sbjct: 247 EQIKEYFGAFGEIENIELPMDTKTNERRGFCFITY-TDEEPVKKLLES 293
>gi|358055852|dbj|GAA98197.1| hypothetical protein E5Q_04880 [Mixia osmundae IAM 14324]
Length = 545
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 59/132 (44%), Gaps = 31/132 (23%)
Query: 99 AYVRFKNLESVEKALEMNGHVIDEHTIRVD----------KALTTTK-------SNSHSI 141
YV F + + ALEM G +D TI VD T K + S ++
Sbjct: 332 GYVDFVDAAGAKAALEMAGTELDGRTINVDLSAPRPPRDGPGATPKKQFNDELSAPSQTV 391
Query: 142 FIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESC 201
F+GN+ FE+ ++ + ++F G +++VR+ D T KGF YV F
Sbjct: 392 FVGNLSFESTQDAVWESFSDFGGVNSVRVPTDMETGRPKGFAYVEF-------------- 437
Query: 202 GEIDNVRLIRDQ 213
G++D+ + DQ
Sbjct: 438 GDVDSAKKAVDQ 449
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 47/85 (55%), Gaps = 6/85 (7%)
Query: 141 IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFES 200
+F+G + + E L++AFESCGEI + R++ D+ T +GFGYV+F + + A E
Sbjct: 290 VFVGGLSWGITNESLQEAFESCGEIVSARVVTDRETGKSRGFGYVDF-VDAAGAKAALEM 348
Query: 201 CG-EID----NVRLIRDQHTNIGKG 220
G E+D NV L + G G
Sbjct: 349 AGTELDGRTINVDLSAPRPPRDGPG 373
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 31/44 (70%)
Query: 183 GYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 226
G +++ E L++AFESCGEI + R++ D+ T +GFGYV+F
Sbjct: 293 GGLSWGITNESLQEAFESCGEIVSARVVTDRETGKSRGFGYVDF 336
>gi|38141765|dbj|BAD00701.1| TIA-1 homologue [Bombyx mori]
Length = 388
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 66/131 (50%), Gaps = 11/131 (8%)
Query: 90 VHEKRTNMNAYVRFKNLESVEKALE-MNGHVIDEHTIRVDKALT------TTKSNSHSIF 142
+ E + A++ F + AL MN V+ + ++V+ A + T SN H IF
Sbjct: 40 IREPGNDPYAFLEFTCHTAAVTALAAMNKRVVLDKEMKVNWATSPGNQPKTDTSNHHHIF 99
Query: 143 IGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF--KAEEEELRKAFES 200
+G++ E E LR+AF GEI N R++RD T KG+ +V+F KA+ E +A
Sbjct: 100 VGDLSPEIETNILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMN- 158
Query: 201 CGEIDNVRLIR 211
G+ R IR
Sbjct: 159 -GQWLGSRSIR 168
>gi|344284837|ref|XP_003414171.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D isoform 1
[Loxodonta africana]
Length = 420
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 59/108 (54%), Gaps = 2/108 (1%)
Query: 94 RTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALT-TTKSNSHSIFIGNIPFEAEE 152
R+ +V FK+ SV+K LE+ H +D I +A K +F+G + + E
Sbjct: 187 RSRGFGFVLFKDAASVDKVLELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDTSE 246
Query: 153 EELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFES 200
E++++ F + GEI+N+ L D TN +GF ++ + +EE ++K ES
Sbjct: 247 EQIKEYFGAFGEIENIELPMDTKTNERRGFCFITY-TDEEPVKKLLES 293
>gi|449499935|ref|XP_004175398.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D0 [Taeniopygia
guttata]
Length = 340
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 60/111 (54%), Gaps = 10/111 (9%)
Query: 94 RTNMNAYVRFKNLESVEKALE-----MNGHVIDEHTIRVDKALTTTKSNSHSIFIGNIPF 148
R+ +V FK ESV+K ++ +NG VID + K TK IF+G +
Sbjct: 99 RSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMK----TKEPVKKIFVGGLSP 154
Query: 149 EAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
+ EE++R+ F GE++++ L D TN +GF ++ FK EEE ++K E
Sbjct: 155 DTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFK-EEEPVKKIME 204
Score = 38.9 bits (89), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 30/137 (21%), Positives = 53/137 (38%), Gaps = 46/137 (33%)
Query: 137 NSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK-------- 188
+ +FIG + ++ +++L+ F GE+ + L D T +GFG+V FK
Sbjct: 58 DEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKV 117
Query: 189 --------------------------------------AEEEELRKAFESCGEIDNVRLI 210
EE++R+ F GE++++ L
Sbjct: 118 MDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELP 177
Query: 211 RDQHTNIGKGFGYVNFK 227
D TN +GF ++ FK
Sbjct: 178 MDNKTNKRRGFCFITFK 194
>gi|410957341|ref|XP_003985287.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D-like isoform 1
[Felis catus]
gi|410957343|ref|XP_003985288.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D-like isoform 2
[Felis catus]
Length = 420
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 59/108 (54%), Gaps = 2/108 (1%)
Query: 94 RTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALT-TTKSNSHSIFIGNIPFEAEE 152
R+ +V FK+ SV+K LE+ H +D I +A K +F+G + + E
Sbjct: 187 RSRGFGFVLFKDAASVDKVLELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDTSE 246
Query: 153 EELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFES 200
E++++ F + GEI+N+ L D TN +GF ++ + +EE ++K ES
Sbjct: 247 EQIKEYFGAFGEIENIELPMDTKTNERRGFCFITY-TDEEPVKKLLES 293
>gi|121701611|ref|XP_001269070.1| nuclear and cytoplasmic polyadenylated RNA-binding protein pub1
[Aspergillus clavatus NRRL 1]
gi|119397213|gb|EAW07644.1| nuclear and cytoplasmic polyadenylated RNA-binding protein pub1
[Aspergillus clavatus NRRL 1]
Length = 480
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 70/132 (53%), Gaps = 10/132 (7%)
Query: 88 NKVHEKRTNMNAYVRFKNLESVEKALE-MNGHVIDEHTIRVDKAL---TTTKSNSHS--- 140
NK + K N +V F + + E+A++ +NG I + IRV+ A TT+K ++
Sbjct: 128 NKFNSKGYNY-GFVEFDDPGAAERAMQTLNGRRIHQSEIRVNWAYQSNTTSKEDTSGHFH 186
Query: 141 IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFES 200
IF+G++ E +E L +AF + G + R++ D T +G+G+V F+ + + KA S
Sbjct: 187 IFVGDLSNEVNDEILMQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFR-DRGDADKALNS 245
Query: 201 C-GEIDNVRLIR 211
GE R IR
Sbjct: 246 MDGEWLGSRAIR 257
>gi|402869385|ref|XP_003898743.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D-like isoform 1
[Papio anubis]
gi|402869387|ref|XP_003898744.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D-like isoform 2
[Papio anubis]
Length = 420
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 59/108 (54%), Gaps = 2/108 (1%)
Query: 94 RTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALT-TTKSNSHSIFIGNIPFEAEE 152
R+ +V FK+ SV+K LE+ H +D I +A K +F+G + + E
Sbjct: 187 RSRGFGFVLFKDAASVDKVLELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDTSE 246
Query: 153 EELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFES 200
E++++ F + GEI+N+ L D TN +GF ++ + +EE ++K ES
Sbjct: 247 EQIKEYFGAFGEIENIELPMDTKTNERRGFCFITY-TDEEPVKKLLES 293
>gi|76780030|gb|AAI06633.1| MGC52881 protein [Xenopus laevis]
Length = 346
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 55/111 (49%), Gaps = 7/111 (6%)
Query: 84 CIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALT---TTKSNSH- 139
C+ M KR+ +V F + V+ A+ H ID + +A+ + K +H
Sbjct: 38 CVVMRDPASKRSRGFGFVTFSCMNEVDAAMSARPHTIDGRVVEPKRAVAREESAKPGAHV 97
Query: 140 ---SIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 187
+F+G I + EE LR+ FE G+I++ +I D+ + +GFG+V F
Sbjct: 98 TVKKLFVGGIKEDTEEHHLREYFEEYGKIESTEIITDKQSGKKRGFGFVTF 148
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/138 (23%), Positives = 53/138 (38%), Gaps = 52/138 (37%)
Query: 141 IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF------------- 187
+FIG + FE EE LR +E G++ + ++RD + +GFG+V F
Sbjct: 11 LFIGGLSFETTEESLRNFYEQWGQLTDCVVMRDPASKRSRGFGFVTFSCMNEVDAAMSAR 70
Query: 188 ---------------------------------------KAEEEELRKAFESCGEIDNVR 208
EE LR+ FE G+I++
Sbjct: 71 PHTIDGRVVEPKRAVAREESAKPGAHVTVKKLFVGGIKEDTEEHHLREYFEEYGKIESTE 130
Query: 209 LIRDQHTNIGKGFGYVNF 226
+I D+ + +GFG+V F
Sbjct: 131 IITDKQSGKKRGFGFVTF 148
>gi|256073259|ref|XP_002572949.1| RNA binding protein [Schistosoma mansoni]
gi|353230968|emb|CCD77385.1| putative rna binding protein [Schistosoma mansoni]
Length = 547
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 39/64 (60%), Gaps = 3/64 (4%)
Query: 127 VDKALTTTKSN---SHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFG 183
VDKA K++ + +F+GN+PF+ EEE+ + G I +VRLIRD T +GFG
Sbjct: 369 VDKATDNDKTHCKLDNCVFVGNLPFDCTEEEIYSTLSTLGSIKSVRLIRDSQTGAVRGFG 428
Query: 184 YVNF 187
YV +
Sbjct: 429 YVAY 432
Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 25/44 (56%)
Query: 183 GYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 226
G + F EEE+ + G I +VRLIRD T +GFGYV +
Sbjct: 389 GNLPFDCTEEEIYSTLSTLGSIKSVRLIRDSQTGAVRGFGYVAY 432
>gi|395542043|ref|XP_003772944.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D0 [Sarcophilus
harrisii]
Length = 306
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 60/111 (54%), Gaps = 10/111 (9%)
Query: 94 RTNMNAYVRFKNLESVEKALE-----MNGHVIDEHTIRVDKALTTTKSNSHSIFIGNIPF 148
R+ +V FK ESV+K ++ +NG VID + K TK IF+G +
Sbjct: 87 RSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMK----TKEPVKKIFVGGLSP 142
Query: 149 EAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
+ EE++R+ F GE++++ L D TN +GF ++ FK EEE ++K E
Sbjct: 143 DTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFK-EEEPVKKIME 192
Score = 40.8 bits (94), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 31/142 (21%), Positives = 54/142 (38%), Gaps = 46/142 (32%)
Query: 132 TTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK--- 188
T + +FIG + ++ +++L+ F GE+ + L D T +GFG+V FK
Sbjct: 41 ATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESE 100
Query: 189 -------------------------------------------AEEEELRKAFESCGEID 205
EE++R+ F GE++
Sbjct: 101 SVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVE 160
Query: 206 NVRLIRDQHTNIGKGFGYVNFK 227
++ L D TN +GF ++ FK
Sbjct: 161 SIELPMDNKTNKRRGFCFITFK 182
>gi|302835535|ref|XP_002949329.1| hypothetical protein VOLCADRAFT_36996 [Volvox carteri f.
nagariensis]
gi|300265631|gb|EFJ49822.1| hypothetical protein VOLCADRAFT_36996 [Volvox carteri f.
nagariensis]
Length = 124
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 35/54 (64%)
Query: 141 IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEEL 194
+++G IP E ELR+ F +CGE+ + +I D+HT +GFG+V + +E+ L
Sbjct: 1 VYVGFIPHHTTEHELRQLFSTCGEVADCSIITDRHTGASRGFGFVKYATDEQAL 54
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 31/54 (57%)
Query: 183 GYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKVSFTTLSSI 236
G++ E ELR+ F +CGE+ + +I D+HT +GFG+V + L +I
Sbjct: 4 GFIPHHTTEHELRQLFSTCGEVADCSIITDRHTGASRGFGFVKYATDEQALVAI 57
>gi|212546733|ref|XP_002153520.1| nucleolin protein Nsr1, putative [Talaromyces marneffei ATCC 18224]
gi|210065040|gb|EEA19135.1| nucleolin protein Nsr1, putative [Talaromyces marneffei ATCC 18224]
Length = 472
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 42/67 (62%)
Query: 121 DEHTIRVDKALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGK 180
+E K+ T + NS ++FIGN+ + +EE LR+ FES GE+ VR++ ++ T +
Sbjct: 206 EEPATSAKKSKTESADNSSNLFIGNLSWNIDEEWLRREFESFGELSGVRIMTERETGRSR 265
Query: 181 GFGYVNF 187
GFGYV +
Sbjct: 266 GFGYVEY 272
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 43/79 (54%), Gaps = 2/79 (2%)
Query: 134 TKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEE 193
T S+++F+GN+ F +E +R+ FES G I +RL D T KG+GYV F + +E
Sbjct: 325 TSPESNTLFLGNLVFGVDENAVREVFESQGTIQGIRLPTDPETGRPKGYGYVEF-SSVDE 383
Query: 194 LRKAFESCGEID-NVRLIR 211
R+A D R IR
Sbjct: 384 ARQALNDLQGTDIGGRAIR 402
Score = 43.5 bits (101), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 30/44 (68%)
Query: 183 GYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 226
G +++ +EE LR+ FES GE+ VR++ ++ T +GFGYV +
Sbjct: 229 GNLSWNIDEEWLRREFESFGELSGVRIMTERETGRSRGFGYVEY 272
Score = 40.4 bits (93), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 25/45 (55%)
Query: 182 FGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 226
G + F +E +R+ FES G I +RL D T KG+GYV F
Sbjct: 334 LGNLVFGVDENAVREVFESQGTIQGIRLPTDPETGRPKGYGYVEF 378
>gi|50291529|ref|XP_448197.1| hypothetical protein [Candida glabrata CBS 138]
gi|49527508|emb|CAG61148.1| unnamed protein product [Candida glabrata]
Length = 380
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 56/105 (53%), Gaps = 13/105 (12%)
Query: 100 YVRFKNLESVEKAL-----EMNGHVI-----DEHTIRVDKA-LTTTKSNSHS--IFIGNI 146
YV FK E VE A+ ++NG + + R DK L + N S +F+GN+
Sbjct: 171 YVDFKTQEQVEAAIKLSESQLNGRNLLIKNSKSYEGRPDKTDLVSMSKNPPSRILFVGNL 230
Query: 147 PFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEE 191
F+ +E LRK F+ CGEI +R+ Q + KGF +V+FK EE
Sbjct: 231 SFDTTDELLRKHFQHCGEIVKIRMATFQDSGKCKGFAFVDFKNEE 275
>gi|384486188|gb|EIE78368.1| hypothetical protein RO3G_03072 [Rhizopus delemar RA 99-880]
Length = 499
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 50/214 (23%), Positives = 86/214 (40%), Gaps = 78/214 (36%)
Query: 90 VHEKRTNMNAY--VRFKNLESVEKALE-MNGHVIDEHTIRVDKALTTTKSNSH------- 139
H+++ N Y V ++ LE+ E A++ +NG ++++ + V ++ + S
Sbjct: 148 AHDEQGNSKGYGFVHYETLEAAESAIKSVNGMLLNDRKVFVGHHISRKERESKLGESRVQ 207
Query: 140 --SIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK--------- 188
+I++ NIPF+ +EEL + F G I + + RD KGFG+VNF+
Sbjct: 208 FTNIYVKNIPFDVTDEELSQLFGKYGTITSCVITRDDD-GTSKGFGFVNFEKHQDAQNAV 266
Query: 189 ----------------------AEEEELRKAFESC------------------------- 201
EEELR+ +E
Sbjct: 267 DDLHKKDFRGQDLYVSRAQKKNEREEELRRQYEEAKLEKMSKYQGVNLYVKNLDDDMDDD 326
Query: 202 ---------GEIDNVRLIRDQHTNIGKGFGYVNF 226
G I + +++RD+ TNI +GFG+V F
Sbjct: 327 RLRDEFSVYGVITSAKIMRDEKTNISRGFGFVCF 360
Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 72/150 (48%), Gaps = 17/150 (11%)
Query: 73 PVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALE-MNGHVIDEHTIRV---D 128
PV+ I + R A + R+ AYV F + E+ALE +N +I + R+
Sbjct: 53 PVSSIRVCRDAVTR-------RSLGYAYVNFHRMADAERALETLNYSMIKGRSCRIMWSQ 105
Query: 129 KALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK 188
+ + K N+ +IFI N+ + + L F + G I + ++ D+ N KG+G+V++
Sbjct: 106 RDPSLRKGNNGNIFIKNLDPSIDHKALHDTFSAFGNILSCKIAHDEQGN-SKGYGFVHY- 163
Query: 189 AEEEELRKAFESCGEIDNVRLIRDQHTNIG 218
E +A ES + N L+ D+ +G
Sbjct: 164 ----ETLEAAESAIKSVNGMLLNDRKVFVG 189
Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 27/46 (58%)
Query: 159 FESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEI 204
F G I + +++RD+ TNI +GFG+V F + E+ R E G I
Sbjct: 332 FSVYGVITSAKIMRDEKTNISRGFGFVCFTSPEDATRAVTEMNGRI 377
Score = 37.4 bits (85), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 4/73 (5%)
Query: 119 VIDEHTIRVDKALTTTKSN----SHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQ 174
VID+ T+ + T+ + S S+++G + E L + F G + ++R+ RD
Sbjct: 4 VIDKATVETQGSSTSAPESAPLASASLYVGELDPSVTEAMLFEMFNIIGPVSSIRVCRDA 63
Query: 175 HTNIGKGFGYVNF 187
T G+ YVNF
Sbjct: 64 VTRRSLGYAYVNF 76
>gi|361127946|gb|EHK99901.1| putative Nucleolysin TIA-1 [Glarea lozoyensis 74030]
Length = 505
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 63/121 (52%), Gaps = 9/121 (7%)
Query: 99 AYVRFKNLESVEKALE-MNGHVIDEHTIRVDKALTTTKSNSHS------IFIGNIPFEAE 151
+V + + + E+A++ +NG + + IRV+ A + SN IF+G++ E
Sbjct: 136 GFVEYDDPGAAERAMQTLNGRRVHQAEIRVNWAYQSNTSNKEDTSNHFHIFVGDLSNEVN 195
Query: 152 EEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESC-GEIDNVRLI 210
+E L +AF + G + R++ D T +G+G+V F+ E ++ KA S GE R I
Sbjct: 196 DEVLLQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFR-ERQDAEKALSSMDGEWLGSRAI 254
Query: 211 R 211
R
Sbjct: 255 R 255
>gi|39644771|gb|AAH07392.2| HNRPDL protein, partial [Homo sapiens]
Length = 415
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 59/108 (54%), Gaps = 2/108 (1%)
Query: 94 RTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALT-TTKSNSHSIFIGNIPFEAEE 152
R+ +V FK+ SV+K LE+ H +D I +A K +F+G + + E
Sbjct: 182 RSRGFGFVLFKDAASVDKVLELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDTSE 241
Query: 153 EELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFES 200
E++++ F + GEI+N+ L D TN +GF ++ + +EE ++K ES
Sbjct: 242 EQIKEYFGAFGEIENIELPMDTKTNERRGFCFITY-TDEEPVKKLLES 288
>gi|426344793|ref|XP_004038938.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D-like isoform 1
[Gorilla gorilla gorilla]
gi|426344795|ref|XP_004038939.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D-like isoform 2
[Gorilla gorilla gorilla]
Length = 420
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 59/108 (54%), Gaps = 2/108 (1%)
Query: 94 RTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALT-TTKSNSHSIFIGNIPFEAEE 152
R+ +V FK+ SV+K LE+ H +D I +A K +F+G + + E
Sbjct: 187 RSRGFGFVLFKDAASVDKVLELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDTSE 246
Query: 153 EELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFES 200
E++++ F + GEI+N+ L D TN +GF ++ + +EE ++K ES
Sbjct: 247 EQIKEYFGAFGEIENIELPMDTKTNERRGFCFITY-TDEEPVKKLLES 293
>gi|297673870|ref|XP_002814970.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D-like isoform 1
[Pongo abelii]
gi|332233343|ref|XP_003265861.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D-like isoform 1
[Nomascus leucogenys]
gi|395735091|ref|XP_003776522.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D-like isoform 2
[Pongo abelii]
Length = 420
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 59/108 (54%), Gaps = 2/108 (1%)
Query: 94 RTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALT-TTKSNSHSIFIGNIPFEAEE 152
R+ +V FK+ SV+K LE+ H +D I +A K +F+G + + E
Sbjct: 187 RSRGFGFVLFKDAASVDKVLELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDTSE 246
Query: 153 EELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFES 200
E++++ F + GEI+N+ L D TN +GF ++ + +EE ++K ES
Sbjct: 247 EQIKEYFGAFGEIENIELPMDTKTNERRGFCFITY-TDEEPVKKLLES 293
>gi|291228918|ref|XP_002734426.1| PREDICTED: cleavage stimulation factor subunit 2-like [Saccoglossus
kowalevskii]
Length = 220
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 38/63 (60%)
Query: 132 TTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEE 191
T + S+F+GNIP+EA EE+L+ F G + + RL+ D+ T KG+G+ +K +E
Sbjct: 8 AATDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYKDQE 67
Query: 192 EEL 194
L
Sbjct: 68 TAL 70
Score = 43.5 bits (101), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 32/54 (59%)
Query: 183 GYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKVSFTTLSSI 236
G + ++A EE+L+ F G + + RL+ D+ T KG+G+ +K T LS++
Sbjct: 20 GNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYKDQETALSAM 73
>gi|148664250|ref|NP_057899.2| heterogeneous nuclear ribonucleoprotein D-like [Mus musculus]
Length = 420
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 59/108 (54%), Gaps = 2/108 (1%)
Query: 94 RTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALT-TTKSNSHSIFIGNIPFEAEE 152
R+ +V FK+ SV+K LE+ H +D I +A K +F+G + + E
Sbjct: 187 RSRGFGFVLFKDAASVDKVLELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDTSE 246
Query: 153 EELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFES 200
E++++ F + GEI+N+ L D TN +GF ++ + +EE ++K ES
Sbjct: 247 EQIKEYFGAFGEIENIELPMDTKTNERRGFCFITY-TDEEPVKKLLES 293
>gi|386781544|ref|NP_001247638.1| heterogeneous nuclear ribonucleoprotein D-like [Macaca mulatta]
gi|380787105|gb|AFE65428.1| heterogeneous nuclear ribonucleoprotein D-like isoform a [Macaca
mulatta]
gi|380787107|gb|AFE65429.1| heterogeneous nuclear ribonucleoprotein D-like isoform a [Macaca
mulatta]
gi|383410015|gb|AFH28221.1| heterogeneous nuclear ribonucleoprotein D-like isoform a [Macaca
mulatta]
Length = 420
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 59/108 (54%), Gaps = 2/108 (1%)
Query: 94 RTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALT-TTKSNSHSIFIGNIPFEAEE 152
R+ +V FK+ SV+K LE+ H +D I +A K +F+G + + E
Sbjct: 187 RSRGFGFVLFKDAASVDKVLELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDTSE 246
Query: 153 EELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFES 200
E++++ F + GEI+N+ L D TN +GF ++ + +EE ++K ES
Sbjct: 247 EQIKEYFGAFGEIENIELPMDTKTNERRGFCFITY-TDEEPVKKLLES 293
>gi|296193572|ref|XP_002744572.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A/B-like
[Callithrix jacchus]
Length = 256
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 59/115 (51%), Gaps = 3/115 (2%)
Query: 85 IKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKSNSHSIFIG 144
IKM+ + R+ ++ FK+ SVEK L+ H +D I KA+ K IF+G
Sbjct: 30 IKMDP-NTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKKAMAMKKDPVKKIFVG 88
Query: 145 NIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
+ EA EE++R+ F GEI+ + L N +GF ++ FK E ++K E
Sbjct: 89 GLNPEATEEKIREYFGDFGEIEAIELPMHPKLNKRRGFVFITFK--ERSVKKVLE 141
>gi|383863609|ref|XP_003707272.1| PREDICTED: nucleolysin TIAR-like [Megachile rotundata]
Length = 392
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 63/131 (48%), Gaps = 11/131 (8%)
Query: 90 VHEKRTNMNAYVRFKNLESVEKALE-MNGHVIDEHTIRVDKALTTTK------SNSHSIF 142
+ E + A+V F N + AL MN ++V+ A + SN H IF
Sbjct: 40 IREPGNDPYAFVEFTNHQCAATALAAMNKRSFLNKEMKVNWATSPGNQPKLDTSNHHHIF 99
Query: 143 IGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF--KAEEEELRKAFES 200
+G++ E E + L++AF GEI N R++RD T KG+ +V+F K+E E A
Sbjct: 100 VGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTMKSKGYAFVSFVKKSEAEAAIAAMN- 158
Query: 201 CGEIDNVRLIR 211
G+ R IR
Sbjct: 159 -GQWLGSRSIR 168
Score = 38.9 bits (89), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 24/37 (64%)
Query: 190 EEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 226
E + L++AF GEI N R++RD T KG+ +V+F
Sbjct: 108 ETQTLKEAFAPFGEISNCRIVRDPQTMKSKGYAFVSF 144
>gi|148233568|ref|NP_001079471.1| heterogeneous nuclear ribonucleoprotein A2 homolog 2 [Xenopus
laevis]
gi|1710624|sp|P51990.1|RO22_XENLA RecName: Full=Heterogeneous nuclear ribonucleoprotein A2 homolog 2;
AltName: Full=hnRNP A2(B)
gi|214743|gb|AAB59951.1| ribonucleoprotein [Xenopus laevis]
gi|27694622|gb|AAH43750.1| MGC52881 protein [Xenopus laevis]
Length = 358
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 55/111 (49%), Gaps = 7/111 (6%)
Query: 84 CIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALT---TTKSNSH- 139
C+ M KR+ +V F + V+ A+ H ID + +A+ + K +H
Sbjct: 38 CVVMRDPASKRSRGFGFVTFSCMNEVDAAMSARPHTIDGRVVEPKRAVAREESAKPGAHV 97
Query: 140 ---SIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 187
+F+G I + EE LR+ FE G+I++ +I D+ + +GFG+V F
Sbjct: 98 TVKKLFVGGIKEDTEEHHLREYFEEYGKIESTEIITDKQSGKKRGFGFVTF 148
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/138 (23%), Positives = 53/138 (38%), Gaps = 52/138 (37%)
Query: 141 IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKA----------- 189
+FIG + FE EE LR +E G++ + ++RD + +GFG+V F
Sbjct: 11 LFIGGLSFETTEESLRNFYEQWGQLTDCVVMRDPASKRSRGFGFVTFSCMNEVDAAMSAR 70
Query: 190 -----------------------------------------EEEELRKAFESCGEIDNVR 208
EE LR+ FE G+I++
Sbjct: 71 PHTIDGRVVEPKRAVAREESAKPGAHVTVKKLFVGGIKEDTEEHHLREYFEEYGKIESTE 130
Query: 209 LIRDQHTNIGKGFGYVNF 226
+I D+ + +GFG+V F
Sbjct: 131 IITDKQSGKKRGFGFVTF 148
>gi|398407815|ref|XP_003855373.1| hypothetical protein MYCGRDRAFT_35430 [Zymoseptoria tritici IPO323]
gi|339475257|gb|EGP90349.1| hypothetical protein MYCGRDRAFT_35430 [Zymoseptoria tritici IPO323]
Length = 401
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 65/121 (53%), Gaps = 9/121 (7%)
Query: 99 AYVRFKNLESVEKALE-MNGHVIDEHTIRVDKAL---TTTK---SNSHSIFIGNIPFEAE 151
+V + + + E+A++ +NG + + IRV+ A TT+K SN IF+G++ E
Sbjct: 114 GFVEYDDPGAAERAMQTLNGRRVHQQEIRVNWAYQSNTTSKEDTSNHFHIFVGDLSNEVN 173
Query: 152 EEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESC-GEIDNVRLI 210
+E L +AF + G + R++ D T +G+G+V F+ + + KA S GE R I
Sbjct: 174 DEVLLQAFSAFGTVSEARVMWDMKTGRSRGYGFVAFR-DRADAEKALSSMDGEWLGSRAI 232
Query: 211 R 211
R
Sbjct: 233 R 233
>gi|323348433|gb|EGA82678.1| Nsr1p [Saccharomyces cerevisiae Lalvin QA23]
Length = 254
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 65/134 (48%), Gaps = 17/134 (12%)
Query: 94 RTNMNAYVRFKNLESVEKAL-EMNGHVIDEHTIRVDKALTTTKSN--------------S 138
R+ YV F+N EKA+ EM G ID I D + + N S
Sbjct: 47 RSRGYGYVDFENKSYAEKAIQEMQGKEIDGRPINCDMSTSKPAGNNDRAKKFGDTPSEPS 106
Query: 139 HSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAF 198
++F+GN+ F A+ + + + F GE+ +VR+ T KGFGYV F + E+ +KA
Sbjct: 107 DTLFLGNLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQF-SNMEDAKKAL 165
Query: 199 ESC-GEIDNVRLIR 211
++ GE + R +R
Sbjct: 166 DALQGEYIDNRPVR 179
>gi|344249843|gb|EGW05947.1| Heterogeneous nuclear ribonucleoprotein D0 [Cricetulus griseus]
Length = 257
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 60/111 (54%), Gaps = 10/111 (9%)
Query: 94 RTNMNAYVRFKNLESVEKALE-----MNGHVIDEHTIRVDKALTTTKSNSHSIFIGNIPF 148
R+ +V FK ESV+K ++ +NG VID + K TK IF+G +
Sbjct: 38 RSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMK----TKEPVKKIFVGGLSP 93
Query: 149 EAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
+ EE++R+ F GE++++ L D TN +GF ++ FK EEE ++K E
Sbjct: 94 DTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFK-EEEPVKKIME 143
Score = 38.9 bits (89), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 30/133 (22%), Positives = 52/133 (39%), Gaps = 46/133 (34%)
Query: 141 IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK------------ 188
+FIG + ++ +++L+ F GE+ + L D T +GFG+V FK
Sbjct: 1 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 60
Query: 189 ----------------------------------AEEEELRKAFESCGEIDNVRLIRDQH 214
EE++R+ F GE++++ L D
Sbjct: 61 EHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNK 120
Query: 215 TNIGKGFGYVNFK 227
TN +GF ++ FK
Sbjct: 121 TNKRRGFCFITFK 133
>gi|345327974|ref|XP_001505245.2| PREDICTED: heterogeneous nuclear ribonucleoprotein D0-like
[Ornithorhynchus anatinus]
Length = 306
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 60/111 (54%), Gaps = 10/111 (9%)
Query: 94 RTNMNAYVRFKNLESVEKALE-----MNGHVIDEHTIRVDKALTTTKSNSHSIFIGNIPF 148
R+ +V FK ESV+K ++ +NG VID + K TK IF+G +
Sbjct: 87 RSRGFGFVLFKEAESVDKVMDQKEHKLNGKVIDPKRAKAMK----TKEPVKKIFVGGLSP 142
Query: 149 EAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
+ EE++R+ F GE++++ L D TN +GF ++ FK EEE ++K E
Sbjct: 143 DTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFK-EEEPVKKIME 192
Score = 40.0 bits (92), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 31/142 (21%), Positives = 54/142 (38%), Gaps = 46/142 (32%)
Query: 132 TTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK--- 188
T + +FIG + ++ +++L+ F GE+ + L D T +GFG+V FK
Sbjct: 41 ATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKEAE 100
Query: 189 -------------------------------------------AEEEELRKAFESCGEID 205
EE++R+ F GE++
Sbjct: 101 SVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVE 160
Query: 206 NVRLIRDQHTNIGKGFGYVNFK 227
++ L D TN +GF ++ FK
Sbjct: 161 SIELPMDNKTNKRRGFCFITFK 182
>gi|46122079|ref|XP_385593.1| hypothetical protein FG05417.1 [Gibberella zeae PH-1]
Length = 473
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 64/121 (52%), Gaps = 9/121 (7%)
Query: 99 AYVRFKNLESVEKALE-MNGHVIDEHTIRVDKAL---TTTK---SNSHSIFIGNIPFEAE 151
+V + + + E+A++ +NG + + IRV+ A TT K SN IF+G++ E
Sbjct: 125 GFVEYDDPGAAERAMQTLNGRRVHQSEIRVNWAYQSNTTNKEDTSNHFHIFVGDLSNEVN 184
Query: 152 EEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESC-GEIDNVRLI 210
+E L +AF + G + R++ D T +G+G+V F+ + E KA S GE R I
Sbjct: 185 DEVLTQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFR-DRPEAEKALSSMDGEWLGSRAI 243
Query: 211 R 211
R
Sbjct: 244 R 244
Score = 37.7 bits (86), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 29/148 (19%), Positives = 55/148 (37%), Gaps = 53/148 (35%)
Query: 132 TTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF---- 187
+ N +++IG + EE LR+ FE+ G + NV++I D++ G +G+V +
Sbjct: 75 AAPEPNKRALYIGGLDQRVTEEVLRQIFETTGHVQNVKIIPDKNAR-GYNYGFVEYDDPG 133
Query: 188 ------------------------------------------------KAEEEELRKAFE 199
+ +E L +AF
Sbjct: 134 AAERAMQTLNGRRVHQSEIRVNWAYQSNTTNKEDTSNHFHIFVGDLSNEVNDEVLTQAFS 193
Query: 200 SCGEIDNVRLIRDQHTNIGKGFGYVNFK 227
+ G + R++ D T +G+G+V F+
Sbjct: 194 AFGSVSEARVMWDMKTGRSRGYGFVAFR 221
>gi|149046824|gb|EDL99598.1| heterogeneous nuclear ribonucleoprotein D, isoform CRA_g [Rattus
norvegicus]
Length = 208
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 60/111 (54%), Gaps = 10/111 (9%)
Query: 94 RTNMNAYVRFKNLESVEKALE-----MNGHVIDEHTIRVDKALTTTKSNSHSIFIGNIPF 148
R+ +V FK ESV+K ++ +NG VID + K TK IF+G +
Sbjct: 38 RSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMK----TKEPVKKIFVGGLSP 93
Query: 149 EAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
+ EE++R+ F GE++++ L D TN +GF ++ FK EEE ++K E
Sbjct: 94 DTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFK-EEEPVKKIME 143
>gi|119358437|ref|YP_913081.1| RNP-1 like RNA-binding protein [Chlorobium phaeobacteroides DSM
266]
gi|119355786|gb|ABL66657.1| RNP-1 like RNA-binding protein [Chlorobium phaeobacteroides DSM
266]
Length = 90
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 44/66 (66%), Gaps = 1/66 (1%)
Query: 140 SIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
+I+IGN+P++ E++LR AF G++D+ +I D+ + KGFG+V+ ++E R+A E
Sbjct: 2 NIYIGNLPYQVTEDDLRDAFSQFGQVDSANIITDKFSGRSKGFGFVDM-PHDDEAREAIE 60
Query: 200 SCGEID 205
S + D
Sbjct: 61 SMNDKD 66
Score = 38.5 bits (88), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 28/43 (65%)
Query: 183 GYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVN 225
G + ++ E++LR AF G++D+ +I D+ + KGFG+V+
Sbjct: 6 GNLPYQVTEDDLRDAFSQFGQVDSANIITDKFSGRSKGFGFVD 48
>gi|443924183|gb|ELU43247.1| polyadenylate-binding protein [Rhizoctonia solani AG-1 IA]
Length = 498
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 64/119 (53%), Gaps = 6/119 (5%)
Query: 99 AYVRFKNLESVEKALE-MNGHVIDEHTIRVDKALTTTK-----SNSHSIFIGNIPFEAEE 152
+V + ++ + E AL+ +NG I + IRV+ A T+ SN + +F+G++ E +
Sbjct: 91 GFVEYMDMRAAETALQTLNGRKIFDTEIRVNWAYQGTQNKEDTSNHYHVFVGDLSPEVND 150
Query: 153 EELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIR 211
E L KAF + G + + R++ D ++ +G+G++ F+ + + + GE R IR
Sbjct: 151 EVLAKAFAAFGSLSDARVMWDMNSGKSRGYGFLAFRDKTDAEQAIATMNGEWLGSRAIR 209
>gi|268533576|ref|XP_002631916.1| Hypothetical protein CBG07904 [Caenorhabditis briggsae]
Length = 411
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 65/123 (52%), Gaps = 10/123 (8%)
Query: 99 AYVRFKNLESVEKALE-MNGHVIDEHTIRVDKALTTTK---------SNSHSIFIGNIPF 148
A++ F + +AL+ MNG + + +RV+ A+ ++ S +F+G++
Sbjct: 78 AFIEFGDHNQAGQALQAMNGRSLLDREMRVNWAVDASQPGDSRKQETSRHFHVFVGDLSS 137
Query: 149 EAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVR 208
E + +LR+AF + G++ ++IRD TN KG+G+V++ E+ R + G+ R
Sbjct: 138 EVDSTKLREAFLAFGDVSEAKIIRDTATNKAKGYGFVSYPRREDAERAIEQMNGQWLGRR 197
Query: 209 LIR 211
IR
Sbjct: 198 TIR 200
Score = 40.8 bits (94), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 55/129 (42%), Gaps = 39/129 (30%)
Query: 99 AYVRFKNLESVEKALE-MNGHVIDEHTIRV------------------------------ 127
+V + E E+A+E MNG + TIR
Sbjct: 172 GFVSYPRREDAERAIEQMNGQWLGRRTIRTNWATRKPEEEGGGERRDRGERGERRHYEKT 231
Query: 128 -DKALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVN 186
D+ T +++ S+++G I + E+E+R+AF+ G I+ VR+ + Q G+ +V
Sbjct: 232 FDEIYNQTSADNTSVYVGQIN-QLTEDEIRRAFDRFGPINEVRMFKVQ------GYAFVK 284
Query: 187 FKAEEEELR 195
F+ +E R
Sbjct: 285 FEQKEAAAR 293
>gi|341900388|gb|EGT56323.1| CBN-TIAR-1 protein [Caenorhabditis brenneri]
Length = 399
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 66/121 (54%), Gaps = 8/121 (6%)
Query: 99 AYVRFKNLESVEKALE-MNGHVIDEHTIRVDKALTTTKSNSH-------SIFIGNIPFEA 150
A+V F + +AL+ MN ++ + ++V+ A+ + S +F+G++ E
Sbjct: 83 AFVEFSDHAQASQALQTMNKRLLLDREMKVNWAVEPGQQPSKIDTTRHFHVFVGDLSSEV 142
Query: 151 EEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLI 210
+ ++LR+AF+ G++ + ++IRD +T KG+G+V++ EE R + G+ R I
Sbjct: 143 DNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTI 202
Query: 211 R 211
R
Sbjct: 203 R 203
Score = 43.5 bits (101), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 63/152 (41%), Gaps = 46/152 (30%)
Query: 58 FKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALE-MN 116
F+P+G+V +D + R +K + +V + E E+A+E MN
Sbjct: 151 FQPFGDV----------SDAKVIRDTNTTKSKGY-------GFVSYPKREEAERAIEQMN 193
Query: 117 GHVIDEHTIRV---------------------DKALTTTKSNSHSIFIGNIPFEAEEEEL 155
G + TIR D+ T ++ S+++GNI EE++
Sbjct: 194 GQWLGRRTIRTNWATRKPGDQEKPVHYNEKSYDEIYNQTSGDNTSVYVGNIA-NLSEEDI 252
Query: 156 RKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 187
R+AF S G I VR+ + Q G+ +V F
Sbjct: 253 RQAFASYGRISEVRIFKMQ------GYAFVKF 278
Score = 38.9 bits (89), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 32/44 (72%)
Query: 183 GYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 226
G ++ + + ++LR+AF+ G++ + ++IRD +T KG+G+V++
Sbjct: 136 GDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSY 179
>gi|327272896|ref|XP_003221220.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D-like [Anolis
carolinensis]
Length = 311
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 59/108 (54%), Gaps = 2/108 (1%)
Query: 94 RTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALT-TTKSNSHSIFIGNIPFEAEE 152
R+ +V FK+ SVEK LE+ H +D I +A K +F+G + + E
Sbjct: 79 RSRGFGFVLFKDAASVEKVLELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDTSE 138
Query: 153 EELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFES 200
E++++ F GEI+N+ L D TN +GF ++ + ++EE ++K ES
Sbjct: 139 EQIKEYFGGFGEIENIELPMDTKTNERRGFCFITY-SDEEPVKKLLES 185
>gi|297263669|ref|XP_001087753.2| PREDICTED: hypothetical protein LOC699286 [Macaca mulatta]
Length = 696
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 60/119 (50%), Gaps = 13/119 (10%)
Query: 82 KACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRV---------DKALT 132
K C+ M KR+ +V F + V+K L + H +D TI K +T
Sbjct: 177 KECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVT 236
Query: 133 TTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEE 191
TK IF+G + E++++ FE G++D+ L+ D+ TN +GFG+V F++E+
Sbjct: 237 RTKK----IFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESED 291
>gi|350580575|ref|XP_003480852.1| PREDICTED: heterogeneous nuclear ribonucleoproteins A2/B1-like [Sus
scrofa]
Length = 349
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 55/111 (49%), Gaps = 7/111 (6%)
Query: 84 CIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALT---TTKSNSH- 139
C+ + KR+ +V F ++ V+ A+ H +D + +A+ + K +H
Sbjct: 50 CVVLRDPSNKRSRGFGFVTFSSVAEVDAAMAARPHSVDGKVVDPKRAVAREESEKPGAHL 109
Query: 140 ---SIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 187
+F+G I + EE LR FE G+ID + +I D+ + +GFG+V F
Sbjct: 110 AVKKLFVGGIKEDTEEHHLRDYFEKYGKIDTIEIITDRQSGKKRGFGFVTF 160
Score = 45.1 bits (105), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 31/140 (22%), Positives = 51/140 (36%), Gaps = 52/140 (37%)
Query: 139 HSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKA--------- 189
H +FIG + E+ LR ++ G++ + ++RD +GFG+V F +
Sbjct: 21 HKLFIGGLCSRTTEKSLRNYYQQWGKLTDCVVLRDPSNKRSRGFGFVTFSSVAEVDAAMA 80
Query: 190 -------------------------------------------EEEELRKAFESCGEIDN 206
EE LR FE G+ID
Sbjct: 81 ARPHSVDGKVVDPKRAVAREESEKPGAHLAVKKLFVGGIKEDTEEHHLRDYFEKYGKIDT 140
Query: 207 VRLIRDQHTNIGKGFGYVNF 226
+ +I D+ + +GFG+V F
Sbjct: 141 IEIITDRQSGKKRGFGFVTF 160
>gi|354497793|ref|XP_003511003.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D0-like
[Cricetulus griseus]
Length = 286
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 60/111 (54%), Gaps = 10/111 (9%)
Query: 94 RTNMNAYVRFKNLESVEKALE-----MNGHVIDEHTIRVDKALTTTKSNSHSIFIGNIPF 148
R+ +V FK ESV+K ++ +NG VID + K TK IF+G +
Sbjct: 67 RSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMK----TKEPVKKIFVGGLSP 122
Query: 149 EAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
+ EE++R+ F GE++++ L D TN +GF ++ FK EEE ++K E
Sbjct: 123 DTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFK-EEEPVKKIME 172
Score = 40.4 bits (93), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 31/142 (21%), Positives = 54/142 (38%), Gaps = 46/142 (32%)
Query: 132 TTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK--- 188
T + +FIG + ++ +++L+ F GE+ + L D T +GFG+V FK
Sbjct: 21 ATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESE 80
Query: 189 -------------------------------------------AEEEELRKAFESCGEID 205
EE++R+ F GE++
Sbjct: 81 SVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVE 140
Query: 206 NVRLIRDQHTNIGKGFGYVNFK 227
++ L D TN +GF ++ FK
Sbjct: 141 SIELPMDNKTNKRRGFCFITFK 162
>gi|324510042|gb|ADY44204.1| Nucleolysin TIAR [Ascaris suum]
Length = 367
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 62/134 (46%), Gaps = 27/134 (20%)
Query: 99 AYVRFKNLESVEKALE-MNGHVIDEHTIRV--------------------DKALTTTKSN 137
+V F + ES EKA+ MNG +I IR D+ T+++
Sbjct: 178 GFVSFPSKESAEKAIAGMNGQLIGRRQIRTNWASRKPASAEEAHTKEQTFDEVFNATRAD 237
Query: 138 SHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKA 197
+ S+++GN+ EE+LR+AF S G I VR+ + Q G+ +V + +E R
Sbjct: 238 NTSVYVGNVHSSTTEEDLREAFASIGAISEVRIFKQQ------GYAFVRYATKEAATRAI 291
Query: 198 FESCGEIDNVRLIR 211
+ G+ N + I+
Sbjct: 292 MQMNGKEINGQNIK 305
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 56/107 (52%), Gaps = 7/107 (6%)
Query: 106 LESVEKALEMNGH-VIDEHTIRVDKALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGE 164
L +++KA E+ + + +VD T + H +F+G++ E + L+ AF + GE
Sbjct: 106 LAAIQKAAELKANWAMQNQMPKVD-----TSKHFH-VFVGDLATEIDNNALKAAFAAYGE 159
Query: 165 IDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIR 211
I ++IRD T KG+G+V+F ++E + G++ R IR
Sbjct: 160 ISEAKVIRDPQTMKSKGYGFVSFPSKESAEKAIAGMNGQLIGRRQIR 206
>gi|444723183|gb|ELW63844.1| RNA-binding protein Musashi like protein 1 [Tupaia chinensis]
Length = 324
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 59/115 (51%), Gaps = 5/115 (4%)
Query: 82 KACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVD-----KALTTTKS 136
K C+ M KR+ +V F + V+K L + H +D TI +A +
Sbjct: 41 KECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVT 100
Query: 137 NSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEE 191
+ IF+G + +++++ FE G++D+ L+ D+ TN +GFG+V F++E+
Sbjct: 101 RTKKIFVGGLSVNTTVDDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESED 155
>gi|15010818|dbj|BAB62188.1| JKTBP1delta6 [Homo sapiens]
Length = 244
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 83/192 (43%), Gaps = 30/192 (15%)
Query: 21 MSKLKVFLNIWKMALKLKMNPSLTKSKNHAL-----------SSVTSMFKPYGEVETVRF 69
M + + NI + A K+N S + + + +T +GEV
Sbjct: 1 MEDMNEYSNIEEFAEGSKINASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTI 60
Query: 70 RSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDK 129
++ PV R+ +V FK+ SV+K LE+ H +D I +
Sbjct: 61 KTDPVTG-----------------RSRGFGFVLFKDAASVDKVLELKEHKLDGKLIDPKR 103
Query: 130 ALT-TTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK 188
A K +F+G + + EE++++ F + GEI+N+ L D TN +GF ++ +
Sbjct: 104 AKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITY- 162
Query: 189 AEEEELRKAFES 200
+EE ++K ES
Sbjct: 163 TDEEPVKKLLES 174
>gi|296196170|ref|XP_002745712.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D isoform 1
[Callithrix jacchus]
gi|390460703|ref|XP_003732527.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D isoform 2
[Callithrix jacchus]
Length = 420
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 59/108 (54%), Gaps = 2/108 (1%)
Query: 94 RTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALT-TTKSNSHSIFIGNIPFEAEE 152
R+ +V FK+ SV+K LE+ H +D I +A K +F+G + + E
Sbjct: 187 RSRGFGFVLFKDAASVDKVLELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDTSE 246
Query: 153 EELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFES 200
E++++ F + GEI+N+ L D TN +GF ++ + +EE ++K ES
Sbjct: 247 EQIKEYFGAFGEIENIELPMDTKTNERRGFCFITY-TDEEPVKKLLES 293
>gi|194390304|dbj|BAG61914.1| unnamed protein product [Homo sapiens]
Length = 271
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 59/108 (54%), Gaps = 2/108 (1%)
Query: 94 RTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALT-TTKSNSHSIFIGNIPFEAEE 152
R+ +V FK+ SV+K LE+ H +D I +A K +F+G + + E
Sbjct: 38 RSRGFGFVLFKDAASVDKVLELKEHKLDSKLIDPKRAKALKGKEPPKKVFVGGLSPDTSE 97
Query: 153 EELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFES 200
E++++ F + GEI+N+ L D TN +GF ++ + +EE ++K ES
Sbjct: 98 EQIKEYFGAFGEIENIELPMDTKTNERRGFCFITY-TDEEPVKKLLES 144
>gi|426374260|ref|XP_004053996.1| PREDICTED: probable RNA-binding protein 19 [Gorilla gorilla
gorilla]
Length = 960
Score = 57.8 bits (138), Expect = 4e-06, Method: Composition-based stats.
Identities = 36/118 (30%), Positives = 63/118 (53%), Gaps = 17/118 (14%)
Query: 99 AYVRFKNLESVEKAL-EMNGHVIDEHTIRV-------DKALTTT-------KSNSHSIFI 143
+V ++ E +KAL ++ GHV+D H + V A+T+ K + I +
Sbjct: 777 GFVEYRKPEQAQKALKQLQGHVVDGHKLEVRISERATKPAMTSARKKQVPRKQTTSKILV 836
Query: 144 GNIPFEAEEEELRKAFESCGEIDNVRLIRDQH-TNIGKGFGYVNFKAEEEELRKAFES 200
NIPF+A E+R+ F + GE+ VRL + T +GFG+V+F +++ ++AF +
Sbjct: 837 RNIPFQAHSREIRELFSTFGELKTVRLPKKMTGTGTHRGFGFVDFLTKQDA-KRAFNA 893
Score = 43.5 bits (101), Expect = 0.067, Method: Composition-based stats.
Identities = 46/189 (24%), Positives = 74/189 (39%), Gaps = 36/189 (19%)
Query: 66 TVRFRSVP-------VADITLPRKACIKMNKVHEKRTNMNAY--VRFKNLESVEKALEMN 116
TV+ R P V + P K + + V N Y V F N E V++AL+ N
Sbjct: 295 TVKLRGAPFNVTEKNVMEFLAPLKP-VAIRIVRNAHGNKTGYIFVDFSNEEEVKQALKCN 353
Query: 117 GHVIDEHTIRV--DKALTTTK------------------------SNSHSIFIGNIPFEA 150
+ I V +K + TTK + S +F+ N+P+ +
Sbjct: 354 REYMGGRYIEVFREKNVPTTKGAPKNTTRSWQGRILGENEEEEDLAESGRLFVRNLPYTS 413
Query: 151 EEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLI 210
EE+L K F G + + D T KGF ++ F E ++ E G++ R++
Sbjct: 414 SEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFITFMFPEHAVKAYSEVDGQVFQGRML 473
Query: 211 RDQHTNIGK 219
+ I K
Sbjct: 474 HVLPSTIKK 482
>gi|356513961|ref|XP_003525676.1| PREDICTED: nuclear pore membrane glycoprotein 210-like [Glycine max]
Length = 2304
Score = 57.8 bits (138), Expect = 4e-06, Method: Composition-based stats.
Identities = 27/98 (27%), Positives = 53/98 (54%), Gaps = 6/98 (6%)
Query: 99 AYVRFKNLESVEKALEMNGHVIDEHTIRVDK-----ALTTTKSNSHSIFIGNIPFEAEEE 153
++ + + V+K +E + H+I+ + + + A+ + + IF+G IP E+
Sbjct: 2020 GFITYADPSVVDKVIE-DPHIINGKQVEIKRTIPRGAVGSKDFRTKKIFVGGIPSNVTED 2078
Query: 154 ELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEE 191
E R F GE+ + +++RD TN +GFG++ F +EE
Sbjct: 2079 EFRDFFTRYGEVKDHQIMRDHSTNRSRGFGFITFDSEE 2116
>gi|148235805|ref|NP_001079609.1| heterogeneous nuclear ribonucleoprotein D-like-A [Xenopus laevis]
gi|82241529|sp|Q7ZX83.1|HNDLA_XENLA RecName: Full=Heterogeneous nuclear ribonucleoprotein D-like-A;
Short=hnRNP D-like A; Short=hnRNP DL-A
gi|28175291|gb|AAH45124.1| MGC53310 protein [Xenopus laevis]
Length = 293
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 57/108 (52%), Gaps = 2/108 (1%)
Query: 94 RTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALT-TTKSNSHSIFIGNIPFEAEE 152
R+ +V FK+ SV+K LE N H +D I +A K +F+G + E E
Sbjct: 65 RSRGFGFVLFKDAVSVDKVLETNEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPETTE 124
Query: 153 EELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFES 200
E++++ F GEI+N+ L D TN +GF +V + EE ++K ES
Sbjct: 125 EQIKQYFGGFGEIENIELPIDTKTNERRGFCFVTYTG-EEPVKKLLES 171
>gi|67517823|ref|XP_658695.1| hypothetical protein AN1091.2 [Aspergillus nidulans FGSC A4]
gi|40747053|gb|EAA66209.1| hypothetical protein AN1091.2 [Aspergillus nidulans FGSC A4]
Length = 892
Score = 57.8 bits (138), Expect = 4e-06, Method: Composition-based stats.
Identities = 41/132 (31%), Positives = 67/132 (50%), Gaps = 10/132 (7%)
Query: 88 NKVHEKRTNMNAYVRFKNLESVEKALE-MNGHVIDEHTIRVDKALTTTK------SNSHS 140
N+ + K N +V F + + E+A++ +NG I + IRV+ A + SN
Sbjct: 126 NQFNSKGANY-GFVEFDDPGAAERAMQTLNGRRIHQSEIRVNWAYQSNTANKEDTSNHFH 184
Query: 141 IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFES 200
IF+G++ E +E L +AF + G + R++ D T +G+G+V F+ E + KA S
Sbjct: 185 IFVGDLSNEVNDEVLLQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFR-ERADAEKALTS 243
Query: 201 C-GEIDNVRLIR 211
GE R IR
Sbjct: 244 MDGEWLGSRAIR 255
>gi|429329920|gb|AFZ81679.1| RNA recognition motif domain-containing protein [Babesia equi]
Length = 321
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 66/135 (48%), Gaps = 18/135 (13%)
Query: 64 VETVRFRSVPV-ADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDE 122
V++V FRS+PV +K I K + + NAYV+ + E + ++++
Sbjct: 130 VKSVHFRSLPVDPKFASNKKVGIIKQKFTDAKDTQNAYVKLVSEEYL-------CDILNK 182
Query: 123 HTIRVDKA---LTTTKSNSHS-------IFIGNIPFEAEEEELRKAFESCGEIDNVRLIR 172
+TI VD + T NS S +F+G +P E+EL F + + +VR+IR
Sbjct: 183 NTIEVDGKHLFINATSPNSFSKFSRKKTVFVGRLPPSTNEDELFNLFSNVSPVKSVRIIR 242
Query: 173 DQHTNIGKGFGYVNF 187
D T KGFG+V F
Sbjct: 243 DPKTLKSKGFGFVEF 257
>gi|348508132|ref|XP_003441609.1| PREDICTED: RNA-binding protein Musashi homolog 1-like isoform 2
[Oreochromis niloticus]
Length = 363
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 57/118 (48%), Gaps = 11/118 (9%)
Query: 82 KACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTI--------RVDKALTT 133
K C+ M KR+ +V + VEK L N H +D TI R L T
Sbjct: 49 KECMVMRDPVTKRSRGFGFVTYAEQAGVEKVLAQNRHELDSKTIDPKVAFPRRAQPKLVT 108
Query: 134 TKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEE 191
+ IF+G + E++++ F+ G++D+ L+ D+ TN +GFG+V F+ E+
Sbjct: 109 ---RTKKIFVGGLSVNTTIEDVKQYFDQFGKVDDAMLMFDKTTNRHRGFGFVTFENED 163
Score = 43.5 bits (101), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 28/137 (20%), Positives = 55/137 (40%), Gaps = 50/137 (36%)
Query: 141 IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEE--------- 191
+FIG + ++ +E L++ F GE+ ++RD T +GFG+V + +
Sbjct: 24 MFIGGLSWQTTQEGLKEYFCKFGEVKECMVMRDPVTKRSRGFGFVTYAEQAGVEKVLAQN 83
Query: 192 -----------------------------------------EELRKAFESCGEIDNVRLI 210
E++++ F+ G++D+ L+
Sbjct: 84 RHELDSKTIDPKVAFPRRAQPKLVTRTKKIFVGGLSVNTTIEDVKQYFDQFGKVDDAMLM 143
Query: 211 RDQHTNIGKGFGYVNFK 227
D+ TN +GFG+V F+
Sbjct: 144 FDKTTNRHRGFGFVTFE 160
>gi|326431687|gb|EGD77257.1| hypothetical protein PTSG_08350 [Salpingoeca sp. ATCC 50818]
Length = 397
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 34/48 (70%)
Query: 140 SIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 187
S+++GNIP+EA EEEL K F + G++ N LI DQ+T KGFG+ F
Sbjct: 6 SVWVGNIPYEATEEELIKFFSAVGDVKNFHLITDQNTGRSKGFGFCYF 53
Score = 43.5 bits (101), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 32/54 (59%)
Query: 183 GYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKVSFTTLSSI 236
G + ++A EEEL K F + G++ N LI DQ+T KGFG+ F + S++
Sbjct: 10 GNIPYEATEEELIKFFSAVGDVKNFHLITDQNTGRSKGFGFCYFLDAAAAESAV 63
>gi|296216773|ref|XP_002754712.1| PREDICTED: putative heterogeneous nuclear ribonucleoprotein A1-like
3-like isoform 1 [Callithrix jacchus]
Length = 320
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 57/111 (51%), Gaps = 7/111 (6%)
Query: 84 CIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALT---TTKSNSH- 139
C+ M + KR+ +VR+ +E V+ A+ H +D + +A++ + + +H
Sbjct: 43 CVVMRDPNTKRSRGFGFVRYAAVEEVDAAMNARSHKVDGRVVEPKRAVSREDSQRPGAHL 102
Query: 140 ---SIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 187
IFIG I + EE LR FE G+I+ + ++ D+ + +GF +V F
Sbjct: 103 TVKKIFIGGIKEDTEEHHLRDYFEQYGKIEMIEIMTDRGSGKKRGFAFVTF 153
Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 32/52 (61%)
Query: 141 IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEE 192
+FIG + FE +E LR FE G + + ++RD +T +GFG+V + A EE
Sbjct: 16 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVRYAAVEE 67
>gi|149046822|gb|EDL99596.1| heterogeneous nuclear ribonucleoprotein D, isoform CRA_f [Rattus
norvegicus]
gi|149046823|gb|EDL99597.1| heterogeneous nuclear ribonucleoprotein D, isoform CRA_f [Rattus
norvegicus]
Length = 257
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 60/111 (54%), Gaps = 10/111 (9%)
Query: 94 RTNMNAYVRFKNLESVEKALE-----MNGHVIDEHTIRVDKALTTTKSNSHSIFIGNIPF 148
R+ +V FK ESV+K ++ +NG VID + K TK IF+G +
Sbjct: 38 RSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMK----TKEPVKKIFVGGLSP 93
Query: 149 EAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
+ EE++R+ F GE++++ L D TN +GF ++ FK EEE ++K E
Sbjct: 94 DTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFK-EEEPVKKIME 143
>gi|429860108|gb|ELA34858.1| RNA splicing factor (pad-1) [Colletotrichum gloeosporioides Nara
gc5]
Length = 628
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 64/129 (49%), Gaps = 18/129 (13%)
Query: 93 KRTNMNAYVRFKNLESVEKALEMNGHVI-------------DEHTIRVDKALTTTKSNS- 138
+R+ YV FKN ESV +AL++ G + +R + T NS
Sbjct: 223 QRSKGVGYVEFKNEESVTQALQLTGQKLLGIPIIVQLTEAEKNRQVRNSETATGAHPNSI 282
Query: 139 --HSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRK 196
H +++GNI F E++L+ FE GE++ V+L +D + +G+G+V ++ E + R+
Sbjct: 283 PFHRLYVGNIHFNVTEQDLQAVFEPFGELEFVQLQKDDNGR-SRGYGFVQYR-EASQARE 340
Query: 197 AFESCGEID 205
A E D
Sbjct: 341 ALEKMNGFD 349
Score = 38.5 bits (88), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 131 LTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAE 190
LT + + ++F+ + +L+ FE G ++ ++++D+ + KG GYV FK
Sbjct: 177 LTEDERDRRTVFVQQLAARLRTRDLKAFFEKVGPVNEAQIVKDRISQRSKGVGYVEFK-N 235
Query: 191 EEELRKAFESCGE 203
EE + +A + G+
Sbjct: 236 EESVTQALQLTGQ 248
>gi|50543140|ref|XP_499736.1| YALI0A03773p [Yarrowia lipolytica]
gi|49645601|emb|CAG83659.1| YALI0A03773p [Yarrowia lipolytica CLIB122]
Length = 330
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 54/98 (55%), Gaps = 9/98 (9%)
Query: 99 AYVRFKNLESVEKALEMNGHVIDEHTIRVDKALT---------TTKSNSHSIFIGNIPFE 149
AYV E +E+ + ++ +++ + + A + T ++S +F+GN+PF
Sbjct: 116 AYVDVPTAEKMERLVSLSEQILNGRKLLIKNANSFEGRPEKKDPTDTDSRVLFVGNLPFN 175
Query: 150 AEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 187
A EE L+ F+SCG+I VR++ + T KGF +V+F
Sbjct: 176 ATEEMLQDHFKSCGDIRRVRMMSFEDTGKSKGFSFVDF 213
Score = 40.4 bits (93), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 28/44 (63%)
Query: 183 GYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 226
G + F A EE L+ F+SCG+I VR++ + T KGF +V+F
Sbjct: 170 GNLPFNATEEMLQDHFKSCGDIRRVRMMSFEDTGKSKGFSFVDF 213
>gi|342180347|emb|CCC89824.1| putative RNA-binding protein [Trypanosoma congolense IL3000]
Length = 534
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 46/198 (23%), Positives = 82/198 (41%), Gaps = 46/198 (23%)
Query: 52 SSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEK 111
S +T++F+PYGE+ + M +H + A+VRF E ++
Sbjct: 125 SGLTTLFEPYGEIVSAAV-----------------MRNIHTGESLGTAFVRFATTEQAQR 167
Query: 112 ALE-MNGHVIDEHTIRV--------DKALTTTKSNSHSIFIGNIPFEAEEEELRKAFESC 162
A+E + G + + + V D + + +F+ NIP + + +L + F
Sbjct: 168 AMEALTGSMQEGRAMIVQWAKRQHDDTPVGEARRKIVKLFVRNIPLDVSDGDLSELFGRF 227
Query: 163 GEIDNVRLIRDQHTNIGKG----FGYVNFKAEEEELRKA--------FESCGEI------ 204
G + V + +D + G+ ++ F+ E + A F SCG+I
Sbjct: 228 GAVKGVSIHKDTTPSEGRNAERRIAFITFQTESVAEKAAEVIHNTRPFPSCGKIPLMVKL 287
Query: 205 --DNVRLIRDQHTNIGKG 220
DN R R QHT+ G+G
Sbjct: 288 AEDNPRYARGQHTSNGRG 305
>gi|157108428|ref|XP_001650224.1| splicing factor [Aedes aegypti]
gi|108879330|gb|EAT43555.1| AAEL005046-PA [Aedes aegypti]
Length = 544
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 59/115 (51%), Gaps = 15/115 (13%)
Query: 99 AYVRFKNLESVEKALEMNGH------VIDEHTIRVDKALTTTK--------SNSHSIFIG 144
AY+ FK+ ESV AL ++G + +HT + +T S +++G
Sbjct: 233 AYIEFKDPESVALALGLSGQRLLGIPISVQHTQAEKNRMASTPPQPPPKVTSGPMRLYVG 292
Query: 145 NIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
++ F E+ LR FE G+IDN++LI D T KG+G++ F ++ +KA E
Sbjct: 293 SLHFNITEDMLRGIFEPFGKIDNIQLIMDSDTGRSKGYGFITFH-NADDAKKALE 346
>gi|71896741|ref|NP_001026313.1| heterogeneous nuclear ribonucleoprotein D-like [Gallus gallus]
gi|82233707|sp|Q5ZI72.1|HNRDL_CHICK RecName: Full=Heterogeneous nuclear ribonucleoprotein D-like;
Short=hnRNP D-like; Short=hnRNP DL
gi|53136484|emb|CAG32571.1| hypothetical protein RCJMB04_29l7 [Gallus gallus]
Length = 301
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 59/108 (54%), Gaps = 2/108 (1%)
Query: 94 RTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALT-TTKSNSHSIFIGNIPFEAEE 152
R+ +V FK+ SVEK LE+ H +D I +A K +F+G + + E
Sbjct: 69 RSRGFGFVLFKDAASVEKVLELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDTSE 128
Query: 153 EELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFES 200
E++++ F + GEI+N+ L D TN +GF ++ + +EE ++K ES
Sbjct: 129 EQIKEYFGAFGEIENIELPMDTKTNERRGFCFITY-TDEEPVKKLLES 175
>gi|348508130|ref|XP_003441608.1| PREDICTED: RNA-binding protein Musashi homolog 1-like isoform 1
[Oreochromis niloticus]
Length = 332
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 57/118 (48%), Gaps = 11/118 (9%)
Query: 82 KACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTI--------RVDKALTT 133
K C+ M KR+ +V + VEK L N H +D TI R L T
Sbjct: 49 KECMVMRDPVTKRSRGFGFVTYAEQAGVEKVLAQNRHELDSKTIDPKVAFPRRAQPKLVT 108
Query: 134 TKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEE 191
+ IF+G + E++++ F+ G++D+ L+ D+ TN +GFG+V F+ E+
Sbjct: 109 ---RTKKIFVGGLSVNTTIEDVKQYFDQFGKVDDAMLMFDKTTNRHRGFGFVTFENED 163
Score = 43.1 bits (100), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 28/137 (20%), Positives = 55/137 (40%), Gaps = 50/137 (36%)
Query: 141 IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEE--------- 191
+FIG + ++ +E L++ F GE+ ++RD T +GFG+V + +
Sbjct: 24 MFIGGLSWQTTQEGLKEYFCKFGEVKECMVMRDPVTKRSRGFGFVTYAEQAGVEKVLAQN 83
Query: 192 -----------------------------------------EELRKAFESCGEIDNVRLI 210
E++++ F+ G++D+ L+
Sbjct: 84 RHELDSKTIDPKVAFPRRAQPKLVTRTKKIFVGGLSVNTTIEDVKQYFDQFGKVDDAMLM 143
Query: 211 RDQHTNIGKGFGYVNFK 227
D+ TN +GFG+V F+
Sbjct: 144 FDKTTNRHRGFGFVTFE 160
>gi|242005811|ref|XP_002423754.1| serine/arginine rich splicing factor, putative [Pediculus humanus
corporis]
gi|212506956|gb|EEB11016.1| serine/arginine rich splicing factor, putative [Pediculus humanus
corporis]
Length = 246
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 53/107 (49%), Gaps = 20/107 (18%)
Query: 140 SIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVN------------- 186
S+ +GNI + +L F G++ +V + RD+H+ +GF +V+
Sbjct: 3 SLKVGNISYRTRTLDLHHIFGKFGDVGDVYIPRDKHSKHSRGFAFVSYGRPPPRIDGMVS 62
Query: 187 -------FKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 226
F+ ++LR+ FE CGE+ ++ + RD+ + +GF +V F
Sbjct: 63 LKVDNLTFRTTPDDLRRVFERCGEVGDIYIPRDRFSRESRGFAFVRF 109
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 45/82 (54%), Gaps = 4/82 (4%)
Query: 140 SIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF--KAEEEELRKA 197
S+ + N+ F ++LR+ FE CGE+ ++ + RD+ + +GF +V F K + E+ A
Sbjct: 62 SLKVDNLTFRTTPDDLRRVFERCGEVGDIYIPRDRFSRESRGFAFVRFYDKRDAEDALDA 121
Query: 198 FESCGEIDNVRLIRDQHTNIGK 219
+ G I + R +R Q G+
Sbjct: 122 MD--GRILDGRELRVQMARYGR 141
>gi|308493359|ref|XP_003108869.1| hypothetical protein CRE_11982 [Caenorhabditis remanei]
gi|308247426|gb|EFO91378.1| hypothetical protein CRE_11982 [Caenorhabditis remanei]
Length = 404
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 66/121 (54%), Gaps = 8/121 (6%)
Query: 99 AYVRFKNLESVEKALE-MNGHVIDEHTIRVDKALTTTKSNSH-------SIFIGNIPFEA 150
A+V F + +AL+ MN ++ + ++V+ A+ + S +F+G++ E
Sbjct: 85 AFVEFLDHSQASQALQTMNKRLLLDREMKVNWAVEPGQQPSKVDTTRHFHVFVGDLSSEV 144
Query: 151 EEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLI 210
+ ++LR+AF+ G++ + ++IRD +T KG+G+V++ EE R + G+ R I
Sbjct: 145 DNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTI 204
Query: 211 R 211
R
Sbjct: 205 R 205
Score = 44.3 bits (103), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 63/152 (41%), Gaps = 46/152 (30%)
Query: 58 FKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALE-MN 116
F+P+G+V +D + R +K + +V + E E+A+E MN
Sbjct: 153 FQPFGDV----------SDAKVIRDTNTTKSKGY-------GFVSYPKREEAERAIEQMN 195
Query: 117 GHVIDEHTIRV---------------------DKALTTTKSNSHSIFIGNIPFEAEEEEL 155
G + TIR D+ T ++ S+++GNI E+E+
Sbjct: 196 GQWLGRRTIRTNWATRKPGDQEKPTHYNEKSFDEIYNQTSGDNTSVYVGNIA-NLSEDEI 254
Query: 156 RKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 187
R+AF S G I VR+ + Q G+ +V F
Sbjct: 255 RQAFASYGRISEVRIFKMQ------GYAFVKF 280
Score = 38.9 bits (89), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 32/44 (72%)
Query: 183 GYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 226
G ++ + + ++LR+AF+ G++ + ++IRD +T KG+G+V++
Sbjct: 138 GDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSY 181
>gi|259488599|tpe|CBF88164.1| TPA: nuclear and cytoplasmic polyadenylated RNA-binding protein
pub1 (AFU_orthologue; AFUA_1G12000) [Aspergillus
nidulans FGSC A4]
Length = 477
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 62/121 (51%), Gaps = 9/121 (7%)
Query: 99 AYVRFKNLESVEKALE-MNGHVIDEHTIRVDKALTTTKSNSHS------IFIGNIPFEAE 151
+V F + + E+A++ +NG I + IRV+ A + +N IF+G++ E
Sbjct: 135 GFVEFDDPGAAERAMQTLNGRRIHQSEIRVNWAYQSNTANKEDTSNHFHIFVGDLSNEVN 194
Query: 152 EEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESC-GEIDNVRLI 210
+E L +AF + G + R++ D T +G+G+V F+ E + KA S GE R I
Sbjct: 195 DEVLLQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFR-ERADAEKALTSMDGEWLGSRAI 253
Query: 211 R 211
R
Sbjct: 254 R 254
>gi|342870153|gb|EGU73450.1| hypothetical protein FOXB_16088 [Fusarium oxysporum Fo5176]
Length = 474
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 64/121 (52%), Gaps = 9/121 (7%)
Query: 99 AYVRFKNLESVEKALE-MNGHVIDEHTIRVDKAL---TTTK---SNSHSIFIGNIPFEAE 151
+V + + + E+A++ +NG + + IRV+ A TT K SN IF+G++ E
Sbjct: 127 GFVEYDDPGAAERAMQTLNGRRVHQSEIRVNWAYQSNTTNKEDTSNHFHIFVGDLSNEVN 186
Query: 152 EEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESC-GEIDNVRLI 210
+E L +AF + G + R++ D T +G+G+V F+ + E KA S GE R I
Sbjct: 187 DEVLLQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFR-DRPEAEKALSSMDGEWLGSRAI 245
Query: 211 R 211
R
Sbjct: 246 R 246
Score = 37.7 bits (86), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 29/145 (20%), Positives = 56/145 (38%), Gaps = 53/145 (36%)
Query: 135 KSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF------- 187
+ N +++IG + EE LR+ FE+ G + NV++I D++ G +G+V +
Sbjct: 80 EPNKRALYIGGLDQRVTEEVLRQIFETTGHVQNVKIIPDKNAR-GYNYGFVEYDDPGAAE 138
Query: 188 ---------KAEEEELR------------------------------------KAFESCG 202
+ + E+R +AF + G
Sbjct: 139 RAMQTLNGRRVHQSEIRVNWAYQSNTTNKEDTSNHFHIFVGDLSNEVNDEVLLQAFSAFG 198
Query: 203 EIDNVRLIRDQHTNIGKGFGYVNFK 227
+ R++ D T +G+G+V F+
Sbjct: 199 SVSEARVMWDMKTGRSRGYGFVAFR 223
>gi|196010301|ref|XP_002115015.1| hypothetical protein TRIADDRAFT_28865 [Trichoplax adhaerens]
gi|190582398|gb|EDV22471.1| hypothetical protein TRIADDRAFT_28865 [Trichoplax adhaerens]
Length = 210
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 67/131 (51%), Gaps = 5/131 (3%)
Query: 84 CIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTK-----SNS 138
C+ M+ KR+ +V F + ++VEK L+ H +D+ I A + + +
Sbjct: 33 CVIMHDPITKRSRGFGFVTFTDADNVEKVLQSGPHKLDDKNIDAKVAYPKKQRQKLVTRT 92
Query: 139 HSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAF 198
+F+G I E++ K FE+ G+I++ L+ D+ T +GFG+V F++E+ +
Sbjct: 93 KKVFVGGIATNTTTEDITKYFETFGQIEDAMLMFDKSTQRHRGFGFVIFESEDSADKACE 152
Query: 199 ESCGEIDNVRL 209
EI+N ++
Sbjct: 153 VHFHEINNKKV 163
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 53/137 (38%), Gaps = 50/137 (36%)
Query: 141 IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEE--------- 191
+FIG + + E+LR+ FE GEI ++ D T +GFG+V F +
Sbjct: 6 MFIGGLSWMTNTEKLREYFEKYGEITECVIMHDPITKRSRGFGFVTFTDADNVEKVLQSG 65
Query: 192 -----------------------------------------EELRKAFESCGEIDNVRLI 210
E++ K FE+ G+I++ L+
Sbjct: 66 PHKLDDKNIDAKVAYPKKQRQKLVTRTKKVFVGGIATNTTTEDITKYFETFGQIEDAMLM 125
Query: 211 RDQHTNIGKGFGYVNFK 227
D+ T +GFG+V F+
Sbjct: 126 FDKSTQRHRGFGFVIFE 142
>gi|401842356|gb|EJT44580.1| NSR1-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 393
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 49/144 (34%), Positives = 70/144 (48%), Gaps = 22/144 (15%)
Query: 87 MNKVHEKRTNMNAYVRFKNLESVEKAL-EMNGHVIDEHTIRVDKALTTTKSN-------- 137
+N+ R+ YV F+N EKA+ EM G ID I D + + N
Sbjct: 173 INERGTDRSRGYGYVDFENKSYAEKAIQEMQGKEIDGRPINCDLSTSKPAGNNTNDRAKK 232
Query: 138 --------SHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKA 189
S ++F+GN+ F A+ + + + F GE+ +VR+ T KGFGYV F +
Sbjct: 233 FGDTPSEPSDTLFLGNLSFNADRDTIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSS 292
Query: 190 EEEELRKAFESC-GE-IDN--VRL 209
E+ +KA ES GE IDN VRL
Sbjct: 293 LEDS-KKALESLQGEYIDNRPVRL 315
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 34/49 (69%)
Query: 140 SIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK 188
+IF+G + + ++E L+K FE G + + R+I ++ T+ +G+GYV+F+
Sbjct: 142 TIFVGRLSWSIDDEWLKKEFEHIGGVISARVINERGTDRSRGYGYVDFE 190
Score = 37.0 bits (84), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 31/45 (68%)
Query: 183 GYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK 227
G +++ ++E L+K FE G + + R+I ++ T+ +G+GYV+F+
Sbjct: 146 GRLSWSIDDEWLKKEFEHIGGVISARVINERGTDRSRGYGYVDFE 190
>gi|870747|dbj|BAA09524.1| heterogeneous nuclear ribonucleoprotein D (hnRNP D) [Homo sapiens]
Length = 215
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 60/111 (54%), Gaps = 10/111 (9%)
Query: 94 RTNMNAYVRFKNLESVEKALE-----MNGHVIDEHTIRVDKALTTTKSNSHSIFIGNIPF 148
R+ +V FK ESV+K ++ +NG VID + K TK IF+G +
Sbjct: 45 RSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMK----TKEPVKKIFVGGLSP 100
Query: 149 EAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
+ EE++R+ F GE++++ L D TN +GF ++ FK EEE ++K E
Sbjct: 101 DTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFK-EEEPVKKIME 150
Score = 37.7 bits (86), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 30/133 (22%), Positives = 52/133 (39%), Gaps = 46/133 (34%)
Query: 141 IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK------------ 188
+FIG + ++ +++L+ F GE+ + L D T +GFG+V FK
Sbjct: 8 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 67
Query: 189 ----------------------------------AEEEELRKAFESCGEIDNVRLIRDQH 214
EE++R+ F GE++++ L D
Sbjct: 68 EHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNK 127
Query: 215 TNIGKGFGYVNFK 227
TN +GF ++ FK
Sbjct: 128 TNKRRGFCFITFK 140
>gi|436841541|ref|YP_007325919.1| RNP-1 like RNA-binding protein [Desulfovibrio hydrothermalis AM13 =
DSM 14728]
gi|432170447|emb|CCO23818.1| RNP-1 like RNA-binding protein [Desulfovibrio hydrothermalis AM13 =
DSM 14728]
Length = 87
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 52/92 (56%), Gaps = 17/92 (18%)
Query: 138 SHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKA 197
S +I++GN+P+ A E+++R AFE+ GE+ +V+LI D+ T +GFG+V E E A
Sbjct: 2 SKNIYVGNLPWSASEDDVRAAFEAYGEVISVKLIEDRETGRPRGFGFV-----EMEDNGA 56
Query: 198 FESCGEIDNVRLIRDQHTNIGKGFGYVNFKVS 229
++ +D GK FG N KV+
Sbjct: 57 LDAIDNLD------------GKDFGGRNLKVN 76
>gi|407927556|gb|EKG20446.1| hypothetical protein MPH_02256 [Macrophomina phaseolina MS6]
Length = 485
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 67/132 (50%), Gaps = 10/132 (7%)
Query: 88 NKVHEKRTNMNAYVRFKNLESVEKALE-MNGHVIDEHTIRVDKALTTTK------SNSHS 140
NK K N +V + + + E+A++ +NG + + IRV+ A + SN
Sbjct: 123 NKFQSKGLNY-GFVEYDDPGTAERAMQTLNGRRVHQSEIRVNWAYQSNNQPKEDTSNHFH 181
Query: 141 IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFES 200
IF+G++ E +E L +AF + G++ R++ D T +G+G+V F+ + + KA S
Sbjct: 182 IFVGDLSNEVNDEVLLQAFSAFGQVSEARVMWDMKTGRSRGYGFVAFR-DRGDAEKALSS 240
Query: 201 C-GEIDNVRLIR 211
GE R IR
Sbjct: 241 MDGEWLGSRAIR 252
>gi|253181|gb|AAB22809.1| NSR1=nucleolin homolog [Saccharomyces cerevisiae, Peptide, 249 aa]
Length = 249
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 71/148 (47%), Gaps = 20/148 (13%)
Query: 83 ACIKMNKVHEKRTNMN---AYVRFKNLESVEKAL-EMNGHVIDEHTIRVDKALTTTKSN- 137
I ++E+ T+ + YV F+N EKA+ EM G ID I D + + N
Sbjct: 28 GVIGARVIYERGTDRSRGYGYVDFENKSYAEKAIQEMQGKEIDGRPINCDMSTSKPAGNN 87
Query: 138 -------------SHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGY 184
S ++F+GN+ F A+ + + + F GE+ +VR+ T KGFGY
Sbjct: 88 DRAKKFGDTPSEPSDTLFLGNLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGY 147
Query: 185 VNFKAEEEELRKAFESC-GEIDNVRLIR 211
V F + E+ +KA ++ GE + R +R
Sbjct: 148 VQF-SNMEDAKKALDALQGEYIDNRPVR 174
Score = 42.4 bits (98), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 33/49 (67%)
Query: 140 SIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK 188
+IF+G + + ++E L+K FE G + R+I ++ T+ +G+GYV+F+
Sbjct: 4 TIFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFE 52
Score = 36.6 bits (83), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 30/45 (66%)
Query: 183 GYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK 227
G +++ ++E L+K FE G + R+I ++ T+ +G+GYV+F+
Sbjct: 8 GRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFE 52
>gi|119626277|gb|EAX05872.1| heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA
binding protein 1, 37kDa), isoform CRA_a [Homo sapiens]
Length = 377
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 60/111 (54%), Gaps = 10/111 (9%)
Query: 94 RTNMNAYVRFKNLESVEKALE-----MNGHVIDEHTIRVDKALTTTKSNSHSIFIGNIPF 148
R+ +V FK ESV+K ++ +NG VID + K TK IF+G +
Sbjct: 136 RSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMK----TKEPVKKIFVGGLSP 191
Query: 149 EAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
+ EE++R+ F GE++++ L D TN +GF ++ FK EEE ++K E
Sbjct: 192 DTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFK-EEEPVKKIME 241
Score = 40.0 bits (92), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 31/142 (21%), Positives = 54/142 (38%), Gaps = 46/142 (32%)
Query: 132 TTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK--- 188
T + +FIG + ++ +++L+ F GE+ + L D T +GFG+V FK
Sbjct: 90 ATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESE 149
Query: 189 -------------------------------------------AEEEELRKAFESCGEID 205
EE++R+ F GE++
Sbjct: 150 SVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVE 209
Query: 206 NVRLIRDQHTNIGKGFGYVNFK 227
++ L D TN +GF ++ FK
Sbjct: 210 SIELPMDNKTNKRRGFCFITFK 231
>gi|348508134|ref|XP_003441610.1| PREDICTED: RNA-binding protein Musashi homolog 1-like isoform 3
[Oreochromis niloticus]
Length = 351
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 57/118 (48%), Gaps = 11/118 (9%)
Query: 82 KACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTI--------RVDKALTT 133
K C+ M KR+ +V + VEK L N H +D TI R L T
Sbjct: 49 KECMVMRDPVTKRSRGFGFVTYAEQAGVEKVLAQNRHELDSKTIDPKVAFPRRAQPKLVT 108
Query: 134 TKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEE 191
+ IF+G + E++++ F+ G++D+ L+ D+ TN +GFG+V F+ E+
Sbjct: 109 ---RTKKIFVGGLSVNTTIEDVKQYFDQFGKVDDAMLMFDKTTNRHRGFGFVTFENED 163
Score = 43.5 bits (101), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 28/137 (20%), Positives = 55/137 (40%), Gaps = 50/137 (36%)
Query: 141 IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEE--------- 191
+FIG + ++ +E L++ F GE+ ++RD T +GFG+V + +
Sbjct: 24 MFIGGLSWQTTQEGLKEYFCKFGEVKECMVMRDPVTKRSRGFGFVTYAEQAGVEKVLAQN 83
Query: 192 -----------------------------------------EELRKAFESCGEIDNVRLI 210
E++++ F+ G++D+ L+
Sbjct: 84 RHELDSKTIDPKVAFPRRAQPKLVTRTKKIFVGGLSVNTTIEDVKQYFDQFGKVDDAMLM 143
Query: 211 RDQHTNIGKGFGYVNFK 227
D+ TN +GFG+V F+
Sbjct: 144 FDKTTNRHRGFGFVTFE 160
>gi|448520521|ref|XP_003868297.1| hypothetical protein CORT_0C00140 [Candida orthopsilosis Co 90-125]
gi|380352637|emb|CCG25393.1| hypothetical protein CORT_0C00140 [Candida orthopsilosis]
Length = 327
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 55/101 (54%), Gaps = 8/101 (7%)
Query: 99 AYVRFKNLESVEKALEMNGHVIDEHTIRVDKALT--------TTKSNSHSIFIGNIPFEA 150
AYV KN E VEK + ++ ++ + + A + + S +F+GN+ F+
Sbjct: 128 AYVDVKNEEQVEKLIALSEQNLNGRNLLIKSATSFEGRPEKESKLPPSRILFVGNLSFDT 187
Query: 151 EEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEE 191
E+ LR+ F+ CG+I +R+ Q T KGF +++FK+E+
Sbjct: 188 TEDNLREHFQHCGDIVRIRMATFQDTGKCKGFAFIDFKSED 228
Score = 42.4 bits (98), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 34/57 (59%)
Query: 183 GYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKVSFTTLSSIFSK 239
G ++F E+ LR+ F+ CG+I +R+ Q T KGF +++FK ++++ SK
Sbjct: 181 GNLSFDTTEDNLREHFQHCGDIVRIRMATFQDTGKCKGFAFIDFKSEDGAITAMKSK 237
>gi|320591142|gb|EFX03581.1| polyadenylate-binding protein [Grosmannia clavigera kw1407]
Length = 780
Score = 57.4 bits (137), Expect = 5e-06, Method: Composition-based stats.
Identities = 36/132 (27%), Positives = 64/132 (48%), Gaps = 15/132 (11%)
Query: 99 AYVRFKNLESVEKALE-MNGHVIDEHTIRV---------DKALTTTKSNSHSIFIGNIPF 148
+V ++ E+ ++A++ +NG +++E + V K+N +I+I N+
Sbjct: 190 GFVHYETDEAAQQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKANYTNIYIKNLHA 249
Query: 149 EAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVR 208
+ ++E RK FE G + + + RDQ T +GFG++NF E KA E N R
Sbjct: 250 DVTDDEFRKLFEQYGAVTSSTIARDQETGKSRGFGFINFTTHESA-AKAVEEL----NSR 304
Query: 209 LIRDQHTNIGKG 220
I Q +G+
Sbjct: 305 EIHGQELYVGRA 316
Score = 55.5 bits (132), Expect = 2e-05, Method: Composition-based stats.
Identities = 54/215 (25%), Positives = 86/215 (40%), Gaps = 71/215 (33%)
Query: 73 PVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALE-MNGHVIDEHTIRV---- 127
PVA I + R A + R+ AYV + + EKALE +N +I R+
Sbjct: 84 PVASIRVCRDAVTR-------RSLGYAYVNYNSTADGEKALEELNYTLIKNRPCRIMWSQ 136
Query: 128 -DKALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVN 186
D AL K+ +IFI N+ + + L F + G I + ++ +D+H N KG+G+V+
Sbjct: 137 RDPALR--KTGQGNIFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEHGN-SKGYGFVH 193
Query: 187 FKAEE----------------------------------EEL------------------ 194
++ +E EE+
Sbjct: 194 YETDEAAQQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKANYTNIYIKNLHADVTD 253
Query: 195 ---RKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 226
RK FE G + + + RDQ T +GFG++NF
Sbjct: 254 DEFRKLFEQYGAVTSSTIARDQETGKSRGFGFINF 288
>gi|224011371|ref|XP_002295460.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|209583491|gb|ACI64177.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 76
Score = 57.4 bits (137), Expect = 5e-06, Method: Composition-based stats.
Identities = 27/63 (42%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 140 SIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
++F+GN+ F +E+ +R+ F+ CGEI +VR D+ T KGFG+V F E E KA E
Sbjct: 2 TVFVGNLSFHIDEDTVRETFKDCGEIASVRFAEDRETGAFKGFGHVEF-VESEATDKAVE 60
Query: 200 SCG 202
G
Sbjct: 61 LAG 63
Score = 45.1 bits (105), Expect = 0.022, Method: Composition-based stats.
Identities = 21/50 (42%), Positives = 31/50 (62%)
Query: 183 GYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKVSFTT 232
G ++F +E+ +R+ F+ CGEI +VR D+ T KGFG+V F S T
Sbjct: 6 GNLSFHIDEDTVRETFKDCGEIASVRFAEDRETGAFKGFGHVEFVESEAT 55
>gi|431916163|gb|ELK16415.1| Heterogeneous nuclear ribonucleoprotein D0 [Pteropus alecto]
Length = 334
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 60/111 (54%), Gaps = 10/111 (9%)
Query: 94 RTNMNAYVRFKNLESVEKALE-----MNGHVIDEHTIRVDKALTTTKSNSHSIFIGNIPF 148
R+ +V FK ESV+K ++ +NG VID + K TK IF+G +
Sbjct: 117 RSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMK----TKEPVKKIFVGGLSP 172
Query: 149 EAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
+ EE++R+ F GE++++ L D TN +GF ++ FK EEE ++K E
Sbjct: 173 DTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFK-EEEPVKKIME 222
Score = 38.9 bits (89), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 30/133 (22%), Positives = 52/133 (39%), Gaps = 46/133 (34%)
Query: 141 IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK------------ 188
+FIG + ++ +++L+ F GE+ + L D T +GFG+V FK
Sbjct: 80 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 139
Query: 189 ----------------------------------AEEEELRKAFESCGEIDNVRLIRDQH 214
EE++R+ F GE++++ L D
Sbjct: 140 EHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNK 199
Query: 215 TNIGKGFGYVNFK 227
TN +GF ++ FK
Sbjct: 200 TNKRRGFCFITFK 212
>gi|384247365|gb|EIE20852.1| hypothetical protein COCSUDRAFT_4708, partial [Coccomyxa
subellipsoidea C-169]
Length = 264
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 67/117 (57%), Gaps = 9/117 (7%)
Query: 98 NAYVRFKNLESVEKALE-MNGHVIDEHTIRVDKALT---TTKSNSHS-IFIGNIPFEAEE 152
+A+V+F++ ++ AL+ +NG ++ +R+ A T + SHS IF+GN+ + +
Sbjct: 48 SAFVKFEDHQAAAIALKTINGRILYNKEVRIQWAFQKEKTENTASHSHIFVGNLSGDVAD 107
Query: 153 EELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRL 209
L +AF+ GE + R++ D T KGFG+V+F+ +E A ++ E+D ++
Sbjct: 108 PVLLQAFQHLGECSDARVMWDHSTGRSKGFGFVSFRTKE----AAEKALAEMDGAQV 160
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 54/110 (49%), Gaps = 21/110 (19%)
Query: 94 RTNMNAYVRFKNLESVEKAL-EMNGHVIDEHTIRVDKALTTTKSNSH------------- 139
R+ +V F+ E+ EKAL EM+G + + IR A T++ +
Sbjct: 133 RSKGFGFVSFRTKEAAEKALAEMDGAQVGQWKIRCGWAHHKTEAVTGLDIDTVDRADPAN 192
Query: 140 -SIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK 188
++++GN+P E EE+LR AF + GEI ++ G+G+V ++
Sbjct: 193 TNVYVGNLPTEVMEEDLRAAFGAYGEITGLKPCHK------GGYGFVTYR 236
>gi|410915348|ref|XP_003971149.1| PREDICTED: RNA-binding protein Musashi homolog 2-like isoform 4
[Takifugu rubripes]
Length = 350
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 58/115 (50%), Gaps = 5/115 (4%)
Query: 82 KACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVD-----KALTTTKS 136
+ C+ M KR+ +V F + SV+K L H +D TI +A +
Sbjct: 48 RECMVMRDPTTKRSRGFGFVTFTDAASVDKVLAQQHHELDSKTIDPKVAFPRRAQPKMVT 107
Query: 137 NSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEE 191
+ IF+G + E++++ FE G++D+ L+ D+ TN +GFG++ F+ E+
Sbjct: 108 RTKKIFVGGLSANTVVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFITFENED 162
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/148 (21%), Positives = 60/148 (40%), Gaps = 50/148 (33%)
Query: 130 ALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF-- 187
+L ++ + +FIG + ++ + LR F GEI ++RD T +GFG+V F
Sbjct: 12 SLNDSQHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFTD 71
Query: 188 ----------------------------KAEE--------------------EELRKAFE 199
+A+ E++++ FE
Sbjct: 72 AASVDKVLAQQHHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFE 131
Query: 200 SCGEIDNVRLIRDQHTNIGKGFGYVNFK 227
G++D+ L+ D+ TN +GFG++ F+
Sbjct: 132 QFGKVDDAMLMFDKTTNRHRGFGFITFE 159
>gi|351695030|gb|EHA97948.1| Heterogeneous nuclear ribonucleoprotein D0, partial [Heterocephalus
glaber]
Length = 277
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 60/111 (54%), Gaps = 10/111 (9%)
Query: 94 RTNMNAYVRFKNLESVEKALE-----MNGHVIDEHTIRVDKALTTTKSNSHSIFIGNIPF 148
R+ +V FK ESV+K ++ +NG VID + K TK IF+G +
Sbjct: 58 RSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMK----TKEPVKKIFVGGLSP 113
Query: 149 EAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
+ EE++R+ F GE++++ L D TN +GF ++ FK EEE ++K E
Sbjct: 114 DTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFK-EEEPVKKIME 163
Score = 39.7 bits (91), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 31/142 (21%), Positives = 54/142 (38%), Gaps = 46/142 (32%)
Query: 132 TTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK--- 188
T + +FIG + ++ +++L+ F GE+ + L D T +GFG+V FK
Sbjct: 12 ATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESE 71
Query: 189 -------------------------------------------AEEEELRKAFESCGEID 205
EE++R+ F GE++
Sbjct: 72 SVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVE 131
Query: 206 NVRLIRDQHTNIGKGFGYVNFK 227
++ L D TN +GF ++ FK
Sbjct: 132 SIELPMDNKTNKRRGFCFITFK 153
>gi|297693058|ref|XP_002823848.1| PREDICTED: probable RNA-binding protein 19 [Pongo abelii]
Length = 999
Score = 57.4 bits (137), Expect = 5e-06, Method: Composition-based stats.
Identities = 35/118 (29%), Positives = 63/118 (53%), Gaps = 17/118 (14%)
Query: 99 AYVRFKNLESVEKAL-EMNGHVIDEHTIRV-------DKALTTT-------KSNSHSIFI 143
+V ++ E +KAL ++ GH++D H + V A+T+ K + I +
Sbjct: 816 GFVEYRKPEQAQKALKQLQGHIVDGHKLEVRISERATKPAVTSARKKQVPRKQTTSKILV 875
Query: 144 GNIPFEAEEEELRKAFESCGEIDNVRLIRD-QHTNIGKGFGYVNFKAEEEELRKAFES 200
NIPF+A E+R+ F + GE+ VRL + T +GFG+V+F +++ ++AF +
Sbjct: 876 RNIPFQAHSREIRELFSTFGELKTVRLPKKVTGTGTHRGFGFVDFLTKQDA-KRAFNA 932
Score = 43.5 bits (101), Expect = 0.066, Method: Composition-based stats.
Identities = 36/146 (24%), Positives = 61/146 (41%), Gaps = 26/146 (17%)
Query: 100 YVRFKNLESVEKALEMNGHVIDEHTIRV--DKALTTTK---------------------- 135
+V F N E V++AL+ N + I V +K + TTK
Sbjct: 376 FVDFSNEEEVKQALKCNREYMGGRYIEVFREKNVPTTKGAPKNTTKSWQGRILGENEEEE 435
Query: 136 --SNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEE 193
+ S +F+ N+P+ + EE+L K F G + + D T KGF ++ F E
Sbjct: 436 DLAESGRLFVRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFITFMFPEHA 495
Query: 194 LRKAFESCGEIDNVRLIRDQHTNIGK 219
++ E G++ R++ + I K
Sbjct: 496 VKAYSEVDGQVFQGRMLHVLPSTIKK 521
>gi|357610697|gb|EHJ67099.1| TIA-1-related RNA binding protein [Danaus plexippus]
Length = 388
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 64/131 (48%), Gaps = 11/131 (8%)
Query: 90 VHEKRTNMNAYVRFKN-LESVEKALEMNGHVIDEHTIRVDKALT------TTKSNSHSIF 142
+ E + A++ F N + MN V E ++V+ A + T SN H IF
Sbjct: 40 IREPGNDPYAFLEFTNHASAATALAAMNRRVFLEKEMKVNWATSPGNQPKTDTSNHHHIF 99
Query: 143 IGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF--KAEEEELRKAFES 200
+G++ E E LR+AF GEI N R++RD T KG+ +V+F KA+ E +A
Sbjct: 100 VGDLSPEIETHILREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMN- 158
Query: 201 CGEIDNVRLIR 211
G+ R IR
Sbjct: 159 -GQWLGSRSIR 168
Score = 38.5 bits (88), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 22/33 (66%)
Query: 194 LRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 226
LR+AF GEI N R++RD T KG+ +V+F
Sbjct: 112 LREAFAPFGEISNCRIVRDPQTLKSKGYAFVSF 144
>gi|354497787|ref|XP_003511000.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D-like
[Cricetulus griseus]
gi|344249844|gb|EGW05948.1| Heterogeneous nuclear ribonucleoprotein D-like [Cricetulus griseus]
Length = 271
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 59/108 (54%), Gaps = 2/108 (1%)
Query: 94 RTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALT-TTKSNSHSIFIGNIPFEAEE 152
R+ +V FK+ SV+K LE+ H +D I +A K +F+G + + E
Sbjct: 38 RSRGFGFVLFKDAASVDKVLELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDTSE 97
Query: 153 EELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFES 200
E++++ F + GEI+N+ L D TN +GF ++ + +EE ++K ES
Sbjct: 98 EQIKEYFGAFGEIENIELPMDTKTNERRGFCFITY-TDEEPVKKLLES 144
>gi|148235301|ref|NP_001084608.1| heterogeneous nuclear ribonucleoprotein D-like-B [Xenopus laevis]
gi|82237179|sp|Q6NU14.1|HNDLB_XENLA RecName: Full=Heterogeneous nuclear ribonucleoprotein D-like-B;
Short=hnRNP D-like B; Short=hnRNP DL-B
gi|46249880|gb|AAH68788.1| MGC81335 protein [Xenopus laevis]
Length = 291
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 57/108 (52%), Gaps = 2/108 (1%)
Query: 94 RTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALT-TTKSNSHSIFIGNIPFEAEE 152
R+ +V FK+ SV+K LE H +D I +A K +F+G + E E
Sbjct: 73 RSRGFGFVLFKDAVSVDKVLETKEHKLDGKLIDPKRAKALQGKEPPKKVFVGGLSPETTE 132
Query: 153 EELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFES 200
E++++ F GEI+N+ L D TN +GF +V + +EE ++K ES
Sbjct: 133 EQIKQYFGGFGEIENIELPMDTKTNERRGFCFVTY-TDEEPVQKLLES 179
>gi|432858970|ref|XP_004069029.1| PREDICTED: RNA-binding protein Musashi homolog 1-like [Oryzias
latipes]
Length = 299
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 58/118 (49%), Gaps = 11/118 (9%)
Query: 82 KACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTI--------RVDKALTT 133
K C+ M KR+ +V + + VE+ L N H +D TI R L T
Sbjct: 26 KECMVMRDPVTKRSRGFGFVTYADQAGVEQVLAQNRHELDSKTIDPKVAFPRRAQPKLVT 85
Query: 134 TKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEE 191
+ IF+G + E++++ F+ G++D+ L+ D+ TN +GFG+V F+ E+
Sbjct: 86 ---RTKKIFVGGLSVNTTIEDVKQYFDQFGKVDDAMLMFDKTTNRHRGFGFVTFENED 140
Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 29/137 (21%), Positives = 55/137 (40%), Gaps = 50/137 (36%)
Query: 141 IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEE--------- 191
+FIG + ++ +E LR+ F GE+ ++RD T +GFG+V + +
Sbjct: 1 MFIGGLSWQTTQEGLREYFGKFGEVKECMVMRDPVTKRSRGFGFVTYADQAGVEQVLAQN 60
Query: 192 -----------------------------------------EELRKAFESCGEIDNVRLI 210
E++++ F+ G++D+ L+
Sbjct: 61 RHELDSKTIDPKVAFPRRAQPKLVTRTKKIFVGGLSVNTTIEDVKQYFDQFGKVDDAMLM 120
Query: 211 RDQHTNIGKGFGYVNFK 227
D+ TN +GFG+V F+
Sbjct: 121 FDKTTNRHRGFGFVTFE 137
>gi|3747052|gb|AAC77437.1| estrogen response element binding protein [Saguinus oedipus]
Length = 358
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 55/103 (53%), Gaps = 9/103 (8%)
Query: 94 RTNMNAYVRFKNLESVEKALE-----MNGHVIDEHTIRVDKALTTTKSNSHSIFIGNIPF 148
R+ +V FK ESV+K ++ +NG VID + K TK IF+G +
Sbjct: 136 RSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMK----TKEPVKKIFVGGLSP 191
Query: 149 EAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEE 191
+ EE++R+ F GE++++ L D TN +GF ++ FK EE
Sbjct: 192 DTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKGEE 234
Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/142 (21%), Positives = 54/142 (38%), Gaps = 46/142 (32%)
Query: 132 TTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK--- 188
T + +FIG + ++ +++L+ F GE+ + L D T +GFG+V FK
Sbjct: 90 ATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESE 149
Query: 189 -------------------------------------------AEEEELRKAFESCGEID 205
EE++R+ F GE++
Sbjct: 150 SVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVE 209
Query: 206 NVRLIRDQHTNIGKGFGYVNFK 227
++ L D TN +GF ++ FK
Sbjct: 210 SIELPMDNKTNKRRGFCFITFK 231
>gi|40788328|dbj|BAA31657.2| KIAA0682 protein [Homo sapiens]
Length = 973
Score = 57.4 bits (137), Expect = 5e-06, Method: Composition-based stats.
Identities = 35/118 (29%), Positives = 60/118 (50%), Gaps = 17/118 (14%)
Query: 99 AYVRFKNLESVEKAL-EMNGHVIDEHTIRVD--------------KALTTTKSNSHSIFI 143
+V ++ E +KAL ++ GHV+D H + V K K + I +
Sbjct: 790 GFVEYRKPEQAQKALKQLQGHVVDGHKLEVRISERATKPAVTLARKKQVPRKQTTSKILV 849
Query: 144 GNIPFEAEEEELRKAFESCGEIDNVRLIRDQH-TNIGKGFGYVNFKAEEEELRKAFES 200
NIPF+A E+R+ F + GE+ VRL + T +GFG+V+F +++ ++AF +
Sbjct: 850 RNIPFQAHSREIRELFSTFGELKTVRLPKKMTGTGTHRGFGFVDFLTKQDA-KRAFNA 906
Score = 43.5 bits (101), Expect = 0.066, Method: Composition-based stats.
Identities = 46/189 (24%), Positives = 74/189 (39%), Gaps = 36/189 (19%)
Query: 66 TVRFRSVP-------VADITLPRKACIKMNKVHEKRTNMNAY--VRFKNLESVEKALEMN 116
TV+ R P V + P K + + V N Y V F N E V++AL+ N
Sbjct: 308 TVKLRGAPFNVTEKNVMEFLAPLKP-VAIRIVRNAHGNKTGYIFVDFSNEEEVKQALKCN 366
Query: 117 GHVIDEHTIRV--DKALTTTK------------------------SNSHSIFIGNIPFEA 150
+ I V +K + TTK + S +F+ N+P+ +
Sbjct: 367 REYMGGRYIEVFREKNVPTTKGAPKNTTKSWQGRILGENEEEEDLAESGRLFVRNLPYTS 426
Query: 151 EEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLI 210
EE+L K F G + + D T KGF ++ F E ++ E G++ R++
Sbjct: 427 TEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFITFMFPEHAVKAYSEVDGQVFQGRML 486
Query: 211 RDQHTNIGK 219
+ I K
Sbjct: 487 HVLPSTIKK 495
>gi|426219507|ref|XP_004003963.1| PREDICTED: uncharacterized protein LOC101101951 [Ovis aries]
Length = 503
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 63/117 (53%), Gaps = 3/117 (2%)
Query: 85 IKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALT-TTKSNSHSIFI 143
IK + V R+ +V FK+ SV+K LE+ H +D I +A K +F+
Sbjct: 322 IKTDPVT-GRSRGFGFVLFKDAASVDKVLELKEHKLDGKLIDPKRAKALNGKEPPKKVFV 380
Query: 144 GNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFES 200
G + + EE++++ F + GEI+N+ L D TN +GF ++ + +EE ++K ES
Sbjct: 381 GVLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITY-TDEEPVKKLLES 436
>gi|149521754|ref|XP_001512512.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D-like isoform 1
[Ornithorhynchus anatinus]
gi|338723434|ref|XP_003364726.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D-like [Equus
caballus]
gi|426231939|ref|XP_004009994.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D-like [Ovis
aries]
gi|2547076|dbj|BAA22860.1| A+U-rich element RNA binding factor [Homo sapiens]
Length = 271
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 59/108 (54%), Gaps = 2/108 (1%)
Query: 94 RTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALT-TTKSNSHSIFIGNIPFEAEE 152
R+ +V FK+ SV+K LE+ H +D I +A K +F+G + + E
Sbjct: 38 RSRGFGFVLFKDAASVDKVLELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDTSE 97
Query: 153 EELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFES 200
E++++ F + GEI+N+ L D TN +GF ++ + +EE ++K ES
Sbjct: 98 EQIKEYFGAFGEIENIELPMDTKTNERRGFCFITY-TDEEPVKKLLES 144
>gi|189233691|ref|XP_969160.2| PREDICTED: similar to AGAP005292-PA [Tribolium castaneum]
Length = 358
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 46/79 (58%), Gaps = 4/79 (5%)
Query: 135 KSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF--KAEEE 192
K+ H IF+G++ E E + LR+AF + GEI + R++RD T KG+G+V+F KAE E
Sbjct: 47 KAEHHHIFVGDLSPEIETQTLREAFAAFGEISDCRVVRDPQTLKSKGYGFVSFIKKAEAE 106
Query: 193 ELRKAFESCGEIDNVRLIR 211
A G+ R IR
Sbjct: 107 SAINAMN--GQWLGSRSIR 123
Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 26/37 (70%)
Query: 190 EEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 226
E + LR+AF + GEI + R++RD T KG+G+V+F
Sbjct: 63 ETQTLREAFAAFGEISDCRVVRDPQTLKSKGYGFVSF 99
>gi|312371659|gb|EFR19788.1| hypothetical protein AND_21810 [Anopheles darlingi]
Length = 440
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 59/112 (52%), Gaps = 9/112 (8%)
Query: 90 VHEKRTNMNAYVRFKNLESVEKALE-MNGHVIDEHTIRVDKALT------TTKSNSHSIF 142
+ E + A++ + + S + AL MN + I+V+ A + T S + IF
Sbjct: 40 IREASNDPYAFIEYASHTSAQTALAAMNKRFFLKKEIKVNWATSPGNQPKTDTSQHYHIF 99
Query: 143 IGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF--KAEEE 192
+G++ E E E LR+AF GEI N R++RD T +G+ +V+F KAE E
Sbjct: 100 VGDLSPEIETETLREAFAPFGEISNCRIVRDPQTLKSRGYAFVSFVKKAEAE 151
Score = 40.4 bits (93), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 24/37 (64%)
Query: 190 EEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 226
E E LR+AF GEI N R++RD T +G+ +V+F
Sbjct: 108 ETETLREAFAPFGEISNCRIVRDPQTLKSRGYAFVSF 144
>gi|226288243|gb|EEH43755.1| 28 kDa ribonucleoprotein [Paracoccidioides brasiliensis Pb18]
Length = 492
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Query: 121 DEHTIRVDKALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGK 180
DE + K + ++FIGN+ + +EE LR FE GE+ VR++ D+ T K
Sbjct: 229 DEEEVVAPKKTKVEPTEGGNLFIGNLSWNVDEEWLRSEFEEFGELAGVRIVTDRDTGRSK 288
Query: 181 GFGYVNFKAEEEELRK-AFESCGEIDNVRL 209
GFGYV F E+ ++ A + E+D +L
Sbjct: 289 GFGYVEFTNAEDAVKAHAAKKDTELDGRKL 318
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 59/127 (46%), Gaps = 21/127 (16%)
Query: 94 RTNMNAYVRFKNLESVEKA------LEMNGHVID-------EHTIRVDKALTTTKS---- 136
R+ YV F N E KA E++G ++ + D+A + ++
Sbjct: 286 RSKGFGYVEFTNAEDAVKAHAAKKDTELDGRKLNVDFANARSNAAPRDRAQSRAQNFGDQ 345
Query: 137 ---NSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEE 193
S ++FIGNI F A+E + + F G I VRL D + KGFGYV F + +E
Sbjct: 346 RSPESDTLFIGNIAFSADENMISETFAEYGSILGVRLPTDPESGRPKGFGYVQF-SSIDE 404
Query: 194 LRKAFES 200
R AFES
Sbjct: 405 ARSAFES 411
Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 28/44 (63%)
Query: 183 GYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 226
G +++ +EE LR FE GE+ VR++ D+ T KGFGYV F
Sbjct: 252 GNLSWNVDEEWLRSEFEEFGELAGVRIVTDRDTGRSKGFGYVEF 295
>gi|326431512|gb|EGD77082.1| RNA binding protein [Salpingoeca sp. ATCC 50818]
Length = 386
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 70/180 (38%), Gaps = 39/180 (21%)
Query: 84 CIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKSNS----- 138
C+ M R+ +V FK SVE+ L H I I +AL +
Sbjct: 48 CVVMTDAQGTRSRGFGFVTFKEAASVEQVLASGPHEIAGRVIDPKRALPRHHHDDPHQQQ 107
Query: 139 ------------HSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFG--- 183
+F+G +P +A+EEE++ F G++++V + D+ + +GFG
Sbjct: 108 QQQPQQHRQPRVRKVFLGGLPHDAKEEEIKDFFSKYGDVEDVIIQYDRISGRPRGFGFVV 167
Query: 184 -----------------YVNFKAEEEELRKAF--ESCGEIDNVRLIRDQHTNIGKGFGYV 224
YV FK + E+++AF ES R + Q T G YV
Sbjct: 168 FENDATVDQLVTSSERVYVEFKGKRVEIKRAFPKESAPRSSTARQYQQQFTYRRAGEAYV 227
>gi|195999482|ref|XP_002109609.1| hypothetical protein TRIADDRAFT_20799 [Trichoplax adhaerens]
gi|190587733|gb|EDV27775.1| hypothetical protein TRIADDRAFT_20799 [Trichoplax adhaerens]
Length = 154
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 54/101 (53%), Gaps = 8/101 (7%)
Query: 99 AYVRFKNLESVEKALEMNGHVIDEHTIRVDKAL--------TTTKSNSHSIFIGNIPFEA 150
+V +K++ SV+ L H ID T+ V A+ + S IFIG +
Sbjct: 45 GFVTYKDVTSVKNCLAGIPHQIDGKTVEVKHAVPRESNELAAPHERRSKKIFIGGLGAST 104
Query: 151 EEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEE 191
E E+R+ F G+I N+ L +D+ TN+ +GFG+V F+AE+
Sbjct: 105 TETEIRQYFNQFGKILNIDLKKDRDTNVLRGFGFVVFEAED 145
Score = 39.7 bits (91), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 54/141 (38%), Gaps = 53/141 (37%)
Query: 141 IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKA----------- 189
IFIG + F+ +E LR F G+I + +I + + +GFG+V +K
Sbjct: 3 IFIGGLSFDTTDETLRNYFAKYGDIADSVVICESGSRKPRGFGFVTYKDVTSVKNCLAGI 62
Query: 190 -----------------EEEEL-------------------------RKAFESCGEIDNV 207
E EL R+ F G+I N+
Sbjct: 63 PHQIDGKTVEVKHAVPRESNELAAPHERRSKKIFIGGLGASTTETEIRQYFNQFGKILNI 122
Query: 208 RLIRDQHTNIGKGFGYVNFKV 228
L +D+ TN+ +GFG+V F+
Sbjct: 123 DLKKDRDTNVLRGFGFVVFEA 143
>gi|440898655|gb|ELR50103.1| Heterogeneous nuclear ribonucleoprotein D0, partial [Bos grunniens
mutus]
Length = 277
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 60/111 (54%), Gaps = 10/111 (9%)
Query: 94 RTNMNAYVRFKNLESVEKALE-----MNGHVIDEHTIRVDKALTTTKSNSHSIFIGNIPF 148
R+ +V FK ESV+K ++ +NG VID + K TK IF+G +
Sbjct: 58 RSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMK----TKEPVKKIFVGGLSP 113
Query: 149 EAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
+ EE++R+ F GE++++ L D TN +GF ++ FK EEE ++K E
Sbjct: 114 DTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFK-EEEPVKKIME 163
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 31/142 (21%), Positives = 54/142 (38%), Gaps = 46/142 (32%)
Query: 132 TTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK--- 188
T + +FIG + ++ +++L+ F GE+ + L D T +GFG+V FK
Sbjct: 12 ATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESE 71
Query: 189 -------------------------------------------AEEEELRKAFESCGEID 205
EE++R+ F GE++
Sbjct: 72 SVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVE 131
Query: 206 NVRLIRDQHTNIGKGFGYVNFK 227
++ L D TN +GF ++ FK
Sbjct: 132 SIELPMDNKTNKRRGFCFITFK 153
>gi|426344801|ref|XP_004038942.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D0, partial
[Gorilla gorilla gorilla]
Length = 291
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 60/111 (54%), Gaps = 10/111 (9%)
Query: 94 RTNMNAYVRFKNLESVEKALE-----MNGHVIDEHTIRVDKALTTTKSNSHSIFIGNIPF 148
R+ +V FK ESV+K ++ +NG VID + K TK IF+G +
Sbjct: 72 RSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMK----TKEPVKKIFVGGLSP 127
Query: 149 EAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
+ EE++R+ F GE++++ L D TN +GF ++ FK EEE ++K E
Sbjct: 128 DTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFK-EEEPVKKIME 177
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/142 (21%), Positives = 54/142 (38%), Gaps = 46/142 (32%)
Query: 132 TTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK--- 188
T + +FIG + ++ +++L+ F GE+ + L D T +GFG+V FK
Sbjct: 26 ATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESE 85
Query: 189 -------------------------------------------AEEEELRKAFESCGEID 205
EE++R+ F GE++
Sbjct: 86 SVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVE 145
Query: 206 NVRLIRDQHTNIGKGFGYVNFK 227
++ L D TN +GF ++ FK
Sbjct: 146 SIELPMDNKTNKRRGFCFITFK 167
>gi|410080926|ref|XP_003958043.1| hypothetical protein KAFR_0F03120 [Kazachstania africana CBS 2517]
gi|372464630|emb|CCF58908.1| hypothetical protein KAFR_0F03120 [Kazachstania africana CBS 2517]
Length = 412
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 66/135 (48%), Gaps = 18/135 (13%)
Query: 94 RTNMNAYVRFKNLESVEKAL-EMNGHVIDEHTIRVDKALTTTKSN--------------- 137
R+ YV F+N E EKA+ EM+G ID I D + + +
Sbjct: 204 RSRGYGYVDFENKEYAEKAVKEMHGKEIDGREINCDMSTSKPAAGNNDRAKKFGDVPSEP 263
Query: 138 SHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKA 197
S ++F+GN+ F A+ + + + F GEI +VR+ T KGFGYV + E+ +KA
Sbjct: 264 SETLFLGNLSFNADRDNISEMFSKFGEIVSVRIPTHPETEQPKGFGYVQY-TNVEDAKKA 322
Query: 198 FESC-GEIDNVRLIR 211
++ GE + R +R
Sbjct: 323 LDALQGEYIDNRPVR 337
Score = 42.0 bits (97), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 140 SIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
+IF+G + + ++E L+ FE G + R+I ++ T+ +G+GYV+F+ +E + E
Sbjct: 166 TIFVGRLSWSIDDEWLKNEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKEYAEKAVKE 225
Query: 200 SCG-EIDNVRLIRDQHTN 216
G EID + D T+
Sbjct: 226 MHGKEIDGREINCDMSTS 243
>gi|397525018|ref|XP_003832476.1| PREDICTED: probable RNA-binding protein 19 [Pan paniscus]
Length = 961
Score = 57.0 bits (136), Expect = 6e-06, Method: Composition-based stats.
Identities = 36/118 (30%), Positives = 63/118 (53%), Gaps = 17/118 (14%)
Query: 99 AYVRFKNLESVEKAL-EMNGHVIDEHTIRV-------DKALTTT-------KSNSHSIFI 143
+V ++ E +KAL ++ GHV+D H + V A+T+ K + I +
Sbjct: 778 GFVEYRKPEQAQKALKQLQGHVVDGHKLEVRISERATKPAVTSARKKQVPRKQTTSKILV 837
Query: 144 GNIPFEAEEEELRKAFESCGEIDNVRLIRDQH-TNIGKGFGYVNFKAEEEELRKAFES 200
NIPF+A E+R+ F + GE+ VRL + T +GFG+V+F +++ ++AF +
Sbjct: 838 RNIPFQAHSREIRELFSTFGELKTVRLPKKMTGTGTHRGFGFVDFLTKQDA-KRAFNA 894
Score = 43.1 bits (100), Expect = 0.086, Method: Composition-based stats.
Identities = 46/189 (24%), Positives = 74/189 (39%), Gaps = 36/189 (19%)
Query: 66 TVRFRSVP-------VADITLPRKACIKMNKVHEKRTNMNAY--VRFKNLESVEKALEMN 116
TV+ R P V + P K + + V N Y V F N E V++AL+ N
Sbjct: 295 TVKLRGAPFNVTEKNVMEFLAPLKP-VAIRIVRNAHGNKTGYIFVDFSNEEEVKQALKCN 353
Query: 117 GHVIDEHTIRV--DKALTTTK------------------------SNSHSIFIGNIPFEA 150
+ I V +K + TTK + S +F+ N+P+ +
Sbjct: 354 REYMGGRYIEVFREKNVPTTKGAPKNTTKSWQGRILGENEEEEDLAESGRLFVRNLPYTS 413
Query: 151 EEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLI 210
EE+L K F G + + D T KGF ++ F E ++ E G++ R++
Sbjct: 414 TEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFITFMFPEHAVKAYSEVDGQVFQGRML 473
Query: 211 RDQHTNIGK 219
+ I K
Sbjct: 474 HVLPSTIKK 482
>gi|351709446|gb|EHB12365.1| Heterogeneous nuclear ribonucleoprotein D0 [Heterocephalus glaber]
Length = 271
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 58/111 (52%), Gaps = 10/111 (9%)
Query: 94 RTNMNAYVRFKNLESVEKALE-----MNGHVIDEHTIRVDKALTTTKSNSHSIFIGNIPF 148
R+ +V K ESV+K ++ +NG VID + K TK IF+G +
Sbjct: 146 RSRGFGFVLLKESESVDKVMDQKEHKLNGKVIDPKRAKAMK----TKEPVKKIFVGGLSP 201
Query: 149 EAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
+ EE +R+ F GE++++ L D TN +GF ++ FK EEE ++K E
Sbjct: 202 DTPEENIREYFGGFGEVESIELPMDNKTNKRRGFCFITFK-EEEPVKKIME 251
>gi|114647138|ref|XP_522578.2| PREDICTED: probable RNA-binding protein 19 [Pan troglodytes]
gi|410216396|gb|JAA05417.1| RNA binding motif protein 19 [Pan troglodytes]
gi|410216398|gb|JAA05418.1| RNA binding motif protein 19 [Pan troglodytes]
gi|410263956|gb|JAA19944.1| RNA binding motif protein 19 [Pan troglodytes]
gi|410263958|gb|JAA19945.1| RNA binding motif protein 19 [Pan troglodytes]
gi|410292596|gb|JAA24898.1| RNA binding motif protein 19 [Pan troglodytes]
gi|410292598|gb|JAA24899.1| RNA binding motif protein 19 [Pan troglodytes]
gi|410339181|gb|JAA38537.1| RNA binding motif protein 19 [Pan troglodytes]
gi|410339183|gb|JAA38538.1| RNA binding motif protein 19 [Pan troglodytes]
Length = 961
Score = 57.0 bits (136), Expect = 6e-06, Method: Composition-based stats.
Identities = 36/118 (30%), Positives = 63/118 (53%), Gaps = 17/118 (14%)
Query: 99 AYVRFKNLESVEKAL-EMNGHVIDEHTIRV-------DKALTTT-------KSNSHSIFI 143
+V ++ E +KAL ++ GHV+D H + V A+T+ K + I +
Sbjct: 778 GFVEYRKPEQAQKALKQLQGHVVDGHKLEVRISERATKPAVTSARKKQVPRKQTTSKILV 837
Query: 144 GNIPFEAEEEELRKAFESCGEIDNVRLIRDQH-TNIGKGFGYVNFKAEEEELRKAFES 200
NIPF+A E+R+ F + GE+ VRL + T +GFG+V+F +++ ++AF +
Sbjct: 838 RNIPFQAHSREIRELFSTFGELKTVRLPKKMTGTGTHRGFGFVDFLTKQDA-KRAFNA 894
Score = 43.5 bits (101), Expect = 0.084, Method: Composition-based stats.
Identities = 46/189 (24%), Positives = 74/189 (39%), Gaps = 36/189 (19%)
Query: 66 TVRFRSVP-------VADITLPRKACIKMNKVHEKRTNMNAY--VRFKNLESVEKALEMN 116
TV+ R P V + P K + + V N Y V F N E V++AL+ N
Sbjct: 295 TVKLRGAPFNVTEKNVMEFLAPLKP-VAIRIVRNAHGNKTGYIFVDFSNEEEVKQALKCN 353
Query: 117 GHVIDEHTIRV--DKALTTTK------------------------SNSHSIFIGNIPFEA 150
+ I V +K + TTK + S +F+ N+P+ +
Sbjct: 354 REYMGGRYIEVFREKNVPTTKGAPKNTTKSWQGRILGENEEEEDLAESGRLFVRNLPYTS 413
Query: 151 EEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLI 210
EE+L K F G + + D T KGF ++ F E ++ E G++ R++
Sbjct: 414 TEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFITFMFPEHAVKAYSEVDGQVFQGRML 473
Query: 211 RDQHTNIGK 219
+ I K
Sbjct: 474 HVLPSTIKK 482
>gi|410920299|ref|XP_003973621.1| PREDICTED: RNA-binding protein Musashi homolog 1-like isoform 2
[Takifugu rubripes]
Length = 350
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 57/118 (48%), Gaps = 11/118 (9%)
Query: 82 KACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTI--------RVDKALTT 133
K C+ M KR+ +V + + VEK L N H +D TI R L T
Sbjct: 49 KECMVMRDPVTKRSRGFGFVTYTDQAGVEKVLAQNRHELDSKTIDPKVAFPRRAQPKLVT 108
Query: 134 TKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEE 191
+ IF+G + E+++ F+ G++D+ L+ D+ TN +GFG+V F+ E+
Sbjct: 109 ---RTKKIFVGGLSVNTTIEDVKHYFDQFGKVDDAMLMFDKTTNRHRGFGFVTFENED 163
>gi|345569038|gb|EGX51907.1| hypothetical protein AOL_s00043g641 [Arthrobotrys oligospora ATCC
24927]
Length = 512
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 49/108 (45%), Gaps = 21/108 (19%)
Query: 99 AYVRFKNLESVEKAL-EMNGHVIDEHTIRVDKALTTTKSN------------------SH 139
YV F EKAL E G ID I +D TT + N S
Sbjct: 297 GYVDFATRADAEKALAEKQGAEIDGRPINLD--FTTARQNNNNSQDRARKFGDSESPPSD 354
Query: 140 SIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 187
++F+GN+ F A+EE L A GE+ +VR+ D+ T KGF YV F
Sbjct: 355 TLFVGNLSFNADEEALGAAMSEHGEVTSVRIPTDKDTGNKKGFAYVTF 402
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Query: 138 SHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKA 197
S ++F+G + + +E+ LR+ FE ++N R++ D N KG GYV+F + +
Sbjct: 252 SKTLFVGQLSWNVDEDWLRREFEDVATVENARVVWDNQRNRSKGIGYVDFATRADAEKAL 311
Query: 198 FESCG-EID 205
E G EID
Sbjct: 312 AEKQGAEID 320
Score = 42.0 bits (97), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 27/44 (61%)
Query: 183 GYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 226
G +++ +E+ LR+ FE ++N R++ D N KG GYV+F
Sbjct: 258 GQLSWNVDEDWLRREFEDVATVENARVVWDNQRNRSKGIGYVDF 301
>gi|449302198|gb|EMC98207.1| hypothetical protein BAUCODRAFT_416441 [Baudoinia compniacensis
UAMH 10762]
Length = 479
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 63/121 (52%), Gaps = 9/121 (7%)
Query: 99 AYVRFKNLESVEKALE-MNGHVIDEHTIRVDKALTTTK------SNSHSIFIGNIPFEAE 151
+V + + + E+A++ +NG + + IRV+ A + SN IF+G++ E
Sbjct: 127 GFVEYDDPQCAERAMQTLNGRRVHQQEIRVNWAYQSNTISKEDTSNHFHIFVGDLSNEVN 186
Query: 152 EEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESC-GEIDNVRLI 210
+E L +AF + G + R++ D T +G+G+V+F+ + + KA S GE R I
Sbjct: 187 DEVLLQAFSAFGTVSEARVMWDMKTGRSRGYGFVSFR-DRGDAEKALSSMDGEWLGSRAI 245
Query: 211 R 211
R
Sbjct: 246 R 246
>gi|870743|dbj|BAA09522.1| heterogeneous nuclear ribonucleoprotein D (hnRNP D) [Homo sapiens]
Length = 267
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 60/111 (54%), Gaps = 10/111 (9%)
Query: 94 RTNMNAYVRFKNLESVEKALE-----MNGHVIDEHTIRVDKALTTTKSNSHSIFIGNIPF 148
R+ +V FK ESV+K ++ +NG VID + K TK IF+G +
Sbjct: 48 RSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMK----TKEPVKKIFVGGLSP 103
Query: 149 EAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
+ EE++R+ F GE++++ L D TN +GF ++ FK EEE ++K E
Sbjct: 104 DTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFK-EEEPVKKIME 153
Score = 38.5 bits (88), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 30/133 (22%), Positives = 52/133 (39%), Gaps = 46/133 (34%)
Query: 141 IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK------------ 188
+FIG + ++ +++L+ F GE+ + L D T +GFG+V FK
Sbjct: 11 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 70
Query: 189 ----------------------------------AEEEELRKAFESCGEIDNVRLIRDQH 214
EE++R+ F GE++++ L D
Sbjct: 71 EHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNK 130
Query: 215 TNIGKGFGYVNFK 227
TN +GF ++ FK
Sbjct: 131 TNKRRGFCFITFK 143
>gi|159480766|ref|XP_001698453.1| hypothetical protein CHLREDRAFT_187814 [Chlamydomonas reinhardtii]
gi|158282193|gb|EDP07946.1| predicted protein [Chlamydomonas reinhardtii]
Length = 434
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 46/128 (35%), Positives = 68/128 (53%), Gaps = 12/128 (9%)
Query: 96 NMNAYVRFKNLESVEKALEMNGHVIDEHTIRVD--KALTTTKSNSHS---IFIGNIPFEA 150
N A++ FK E E AL NG +++ +RV+ KA K N +++GN+ FE
Sbjct: 200 NGTAFITFKTQEGYEAALACNGEMLEGRPLRVEKCKAAAELKGNVAGYPVVYVGNVSFEV 259
Query: 151 EEEELRKAF-ESCG-EIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCG---EID 205
E ELRK F E G E VRL +D++ KGF +V+F A ++++ KA G E
Sbjct: 260 GEPELRKLFKERAGVEPSEVRLHKDKNGRP-KGFAHVHF-ANDDDVDKAVALNGLEFEDR 317
Query: 206 NVRLIRDQ 213
N+R+ Q
Sbjct: 318 NIRISYAQ 325
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 70/151 (46%), Gaps = 24/151 (15%)
Query: 85 IKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKSNSHS---- 140
++++K R A+V F N + V+KA+ +NG ++ IR+ A +
Sbjct: 279 VRLHKDKNGRPKGFAHVHFANDDDVDKAVALNGLEFEDRNIRISYAQPKPGEAAAGKGGA 338
Query: 141 -------------IFIGNIPFEAEEEELRKAF-ESCG-EIDNVRLIRDQHTNIGKGFGYV 185
+++GN+ FE E ELRK F E G E VRL +D+ KGF +V
Sbjct: 339 AAAAGGKVAGYPVVYVGNVSFEVGEPELRKLFKERAGVEPSEVRLHKDK-AGRSKGFAHV 397
Query: 186 NFKAEEEELRKAFESCG---EIDNVRLIRDQ 213
+F A + ++ KA G E N+R+ Q
Sbjct: 398 HF-ANDNDVDKAVALNGLEFEDRNIRISYAQ 427
>gi|88811230|ref|ZP_01126486.1| RNA-binding protein [Nitrococcus mobilis Nb-231]
gi|88791769|gb|EAR22880.1| RNA-binding protein [Nitrococcus mobilis Nb-231]
Length = 94
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 35/46 (76%)
Query: 140 SIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYV 185
SI++GN+PF A E+ELR+ F + G +D+VRL+ D+ T +GFG+V
Sbjct: 3 SIYVGNLPFSASEDELRELFAAYGNVDSVRLMTDRDTGRPRGFGFV 48
Score = 43.5 bits (101), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 29/42 (69%)
Query: 183 GYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYV 224
G + F A E+ELR+ F + G +D+VRL+ D+ T +GFG+V
Sbjct: 7 GNLPFSASEDELRELFAAYGNVDSVRLMTDRDTGRPRGFGFV 48
>gi|452845910|gb|EME47843.1| hypothetical protein DOTSEDRAFT_167231 [Dothistroma septosporum
NZE10]
Length = 500
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 9/121 (7%)
Query: 99 AYVRFKNLESVEKALE-MNGHVIDEHTIRVDKAL---TTTK---SNSHSIFIGNIPFEAE 151
+V + + + E+A++ +NG + + IRV+ A T TK SN IF+G++ E
Sbjct: 128 GFVEYDDPGAAERAMQTLNGRRVHQQEIRVNWAYQSNTNTKEDTSNHFHIFVGDLSNEVN 187
Query: 152 EEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESC-GEIDNVRLI 210
+E L +AF + G + R++ D T +G+G+V ++ + E KA S GE R I
Sbjct: 188 DEVLLQAFSAFGTVSEARVMWDMKTGRSRGYGFVAYR-DRGEAEKALSSMDGEWLGSRAI 246
Query: 211 R 211
R
Sbjct: 247 R 247
>gi|397625742|gb|EJK67902.1| hypothetical protein THAOC_10991, partial [Thalassiosira oceanica]
Length = 525
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 45/87 (51%)
Query: 104 KNLESVEKALEMNGHVIDEHTIRVDKALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCG 163
+ E +EK+ + + A TK + HS+++G + + + EEL FESCG
Sbjct: 366 QETEDLEKSKDGGTDAAKSDESKTAAAADGTKKDGHSVYVGQVDYSSTPEELLAHFESCG 425
Query: 164 EIDNVRLIRDQHTNIGKGFGYVNFKAE 190
++ V ++ D+ T KGF Y+ F+ E
Sbjct: 426 TVERVTIVCDKFTGKPKGFAYLEFQNE 452
Score = 43.9 bits (102), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 28/45 (62%)
Query: 183 GYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK 227
G V++ + EEL FESCG ++ V ++ D+ T KGF Y+ F+
Sbjct: 406 GQVDYSSTPEELLAHFESCGTVERVTIVCDKFTGKPKGFAYLEFQ 450
>gi|340905400|gb|EGS17768.1| putative polyadenylated RNA protein [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 485
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 63/121 (52%), Gaps = 9/121 (7%)
Query: 99 AYVRFKNLESVEKALE-MNGHVIDEHTIRVDKALTTTK------SNSHSIFIGNIPFEAE 151
+V + + + E+A++ +NG + ++ IRV+ A + SN IF+G++ E
Sbjct: 136 GFVEYDDPGAAERAMQTLNGRRVHQNEIRVNWAYQSNNANKEDTSNHFHIFVGDLSNEVN 195
Query: 152 EEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESC-GEIDNVRLI 210
+E L +AF + G I R++ D T +G+G+V F+ E + KA S GE R I
Sbjct: 196 DEVLWQAFSAFGSISEARVMWDMKTGRSRGYGFVAFR-ERADAEKALSSMDGEWLGSRAI 254
Query: 211 R 211
R
Sbjct: 255 R 255
>gi|326435665|gb|EGD81235.1| RNA-binding protein Musashi-1 [Salpingoeca sp. ATCC 50818]
Length = 1023
Score = 57.0 bits (136), Expect = 6e-06, Method: Composition-based stats.
Identities = 33/124 (26%), Positives = 54/124 (43%), Gaps = 16/124 (12%)
Query: 84 CIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKSNSHS--- 140
C+ M RT +V F++ K L H+ID + A+ + HS
Sbjct: 455 CVVMTDATTGRTRGFGFVTFRDGRCCAKVLRERPHIIDGREVDPKMAVPREQMEQHSRSS 514
Query: 141 -------------IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 187
+F+G +P A +E L F + GEI+ +I D+ T + +GFG+V F
Sbjct: 515 SAPAAPRGRSARKVFVGGLPSNATDEALIGFFSNFGEIEEAVVIHDKQTRLPRGFGFVTF 574
Query: 188 KAEE 191
+E+
Sbjct: 575 VSEQ 578
>gi|332250675|ref|XP_003274476.1| PREDICTED: probable RNA-binding protein 19 [Nomascus leucogenys]
Length = 997
Score = 57.0 bits (136), Expect = 6e-06, Method: Composition-based stats.
Identities = 35/118 (29%), Positives = 63/118 (53%), Gaps = 17/118 (14%)
Query: 99 AYVRFKNLESVEKAL-EMNGHVIDEHTIRV-------DKALTTT-------KSNSHSIFI 143
+V ++ E +KAL ++ GH++D H + V A+T+ K + I +
Sbjct: 814 GFVEYRKPEQTQKALKQLQGHIVDGHKLEVRISERATKPAVTSARKKQVPRKQTTSKILV 873
Query: 144 GNIPFEAEEEELRKAFESCGEIDNVRLIRDQH-TNIGKGFGYVNFKAEEEELRKAFES 200
NIPF+A E+R+ F + GE+ VRL + T +GFG+V+F +++ ++AF +
Sbjct: 874 RNIPFQAHSREIRELFSTFGELKTVRLPKKMTGTGTHRGFGFVDFLTKQDA-KRAFNA 930
Score = 46.2 bits (108), Expect = 0.011, Method: Composition-based stats.
Identities = 47/189 (24%), Positives = 75/189 (39%), Gaps = 36/189 (19%)
Query: 66 TVRFRSVP-------VADITLPRKACIKMNKVHEKRTNMNAYV--RFKNLESVEKALEMN 116
TV+ R P V + P K + + V N Y+ F N E V++AL+ N
Sbjct: 332 TVKLRGAPFNVTEKNVMEFLAPLKP-VAIRIVRNAHGNKTGYIFADFSNEEEVKQALKCN 390
Query: 117 GHVIDEHTIRV--DKALTTTK------------------------SNSHSIFIGNIPFEA 150
+ I V +K + TTK + S +F+ N+P+ +
Sbjct: 391 REYMGGRYIEVFREKNIPTTKGAPKNTTKSWQGRILRENEEEEDLAESGRLFVRNLPYTS 450
Query: 151 EEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLI 210
EE+L K F G + + D T KGFG+V F E ++ E G++ R++
Sbjct: 451 TEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFGFVTFMFPEHAVKAYSEVDGQVFQGRML 510
Query: 211 RDQHTNIGK 219
+ I K
Sbjct: 511 HVLPSTIKK 519
>gi|302762278|ref|XP_002964561.1| hypothetical protein SELMODRAFT_81392 [Selaginella moellendorffii]
gi|302814304|ref|XP_002988836.1| hypothetical protein SELMODRAFT_128832 [Selaginella moellendorffii]
gi|300143407|gb|EFJ10098.1| hypothetical protein SELMODRAFT_128832 [Selaginella moellendorffii]
gi|300168290|gb|EFJ34894.1| hypothetical protein SELMODRAFT_81392 [Selaginella moellendorffii]
Length = 149
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 49/81 (60%), Gaps = 2/81 (2%)
Query: 132 TTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEE 191
T ++ S +FIG + + EE LR AF GEI VR+I+D+ T +GFG+V++ +
Sbjct: 30 TLSRGFSSKLFIGGLAWGTEERGLRDAFSPFGEIIEVRVIQDRETGRSRGFGFVSY-ITD 88
Query: 192 EELRKAFESC-GEIDNVRLIR 211
+E +KA E+ G + + R IR
Sbjct: 89 QEAQKAMEAMDGRVLDGRTIR 109
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 28/44 (63%)
Query: 183 GYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 226
G + + EE LR AF GEI VR+I+D+ T +GFG+V++
Sbjct: 42 GGLAWGTEERGLRDAFSPFGEIIEVRVIQDRETGRSRGFGFVSY 85
>gi|444723247|gb|ELW63906.1| Heterogeneous nuclear ribonucleoprotein D0, partial [Tupaia
chinensis]
Length = 296
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 60/111 (54%), Gaps = 10/111 (9%)
Query: 94 RTNMNAYVRFKNLESVEKALE-----MNGHVIDEHTIRVDKALTTTKSNSHSIFIGNIPF 148
R+ +V FK ESV+K ++ +NG VID + K TK IF+G +
Sbjct: 89 RSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMK----TKEPVKKIFVGGLSP 144
Query: 149 EAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
+ EE++R+ F GE++++ L D TN +GF ++ FK EEE ++K E
Sbjct: 145 DTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFK-EEEPVKKIME 194
Score = 39.7 bits (91), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 31/142 (21%), Positives = 54/142 (38%), Gaps = 46/142 (32%)
Query: 132 TTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK--- 188
T + +FIG + ++ +++L+ F GE+ + L D T +GFG+V FK
Sbjct: 43 ATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESE 102
Query: 189 -------------------------------------------AEEEELRKAFESCGEID 205
EE++R+ F GE++
Sbjct: 103 SVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVE 162
Query: 206 NVRLIRDQHTNIGKGFGYVNFK 227
++ L D TN +GF ++ FK
Sbjct: 163 SIELPMDNKTNKRRGFCFITFK 184
>gi|223646910|gb|ACN10213.1| Heterogeneous nuclear ribonucleoprotein A/B [Salmo salar]
gi|223672773|gb|ACN12568.1| Heterogeneous nuclear ribonucleoprotein A/B [Salmo salar]
Length = 336
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 61/115 (53%), Gaps = 2/115 (1%)
Query: 85 IKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKSNSHSIFIG 144
IKM+ + R+ ++ FK SV+K LE H +D I KA+ K + IF+G
Sbjct: 113 IKMDS-NTGRSRGFGFILFKEAGSVDKVLEQKEHRLDGRQIDPKKAMAMKKEPAKKIFVG 171
Query: 145 NIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
+ EA EE +R+ F + GEI+++ L D +GF ++ FK EE ++K E
Sbjct: 172 GLNPEATEETIREYFGTFGEIESIELPVDPKFKKRRGFIFITFK-EEATVKKCLE 225
>gi|410920297|ref|XP_003973620.1| PREDICTED: RNA-binding protein Musashi homolog 1-like isoform 1
[Takifugu rubripes]
Length = 331
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 57/118 (48%), Gaps = 11/118 (9%)
Query: 82 KACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTI--------RVDKALTT 133
K C+ M KR+ +V + + VEK L N H +D TI R L T
Sbjct: 49 KECMVMRDPVTKRSRGFGFVTYTDQAGVEKVLAQNRHELDSKTIDPKVAFPRRAQPKLVT 108
Query: 134 TKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEE 191
+ IF+G + E+++ F+ G++D+ L+ D+ TN +GFG+V F+ E+
Sbjct: 109 ---RTKKIFVGGLSVNTTIEDVKHYFDQFGKVDDAMLMFDKTTNRHRGFGFVTFENED 163
>gi|346972032|gb|EGY15484.1| nucleolysin TIA-1 [Verticillium dahliae VdLs.17]
Length = 489
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 65/121 (53%), Gaps = 9/121 (7%)
Query: 99 AYVRFKNLESVEKALE-MNGHVIDEHTIRVDKAL---TTTK---SNSHSIFIGNIPFEAE 151
+V + + + E+A++ +NG + + IRV+ A TT+K SN IF+G++ E
Sbjct: 139 GFVEYDDPGAAERAMQTLNGRRVHQSEIRVNWAYQSNTTSKEDTSNHFHIFVGDLSNEVN 198
Query: 152 EEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESC-GEIDNVRLI 210
+E L +AF + G + R++ D T +G+G+V F+ + + KA S GE R I
Sbjct: 199 DEILSQAFAAFGSVSEARVMWDMKTGRSRGYGFVAFR-DRPDAEKALSSMDGEWLGSRAI 257
Query: 211 R 211
R
Sbjct: 258 R 258
>gi|444723245|gb|ELW63904.1| Heterogeneous nuclear ribonucleoprotein D-like protein [Tupaia
chinensis]
Length = 326
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 59/108 (54%), Gaps = 2/108 (1%)
Query: 94 RTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALT-TTKSNSHSIFIGNIPFEAEE 152
R+ +V FK+ SV+K LE+ H +D I +A K +F+G + + E
Sbjct: 68 RSRGFGFVLFKDAASVDKVLELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDTSE 127
Query: 153 EELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFES 200
E++++ F + GEI+N+ L D TN +GF ++ + +EE ++K ES
Sbjct: 128 EQIKEYFGAFGEIENIELPMDTKTNERRGFCFITY-TDEEPVKKLLES 174
>gi|13279134|gb|AAH04289.1| RBM19 protein [Homo sapiens]
gi|13544005|gb|AAH06137.1| RBM19 protein [Homo sapiens]
gi|190689379|gb|ACE86464.1| RNA binding motif protein 19 protein [synthetic construct]
gi|190690741|gb|ACE87145.1| RNA binding motif protein 19 protein [synthetic construct]
Length = 960
Score = 57.0 bits (136), Expect = 6e-06, Method: Composition-based stats.
Identities = 35/118 (29%), Positives = 60/118 (50%), Gaps = 17/118 (14%)
Query: 99 AYVRFKNLESVEKAL-EMNGHVIDEHTIRVD--------------KALTTTKSNSHSIFI 143
+V ++ E +KAL ++ GHV+D H + V K K + I +
Sbjct: 777 GFVEYRKPEQAQKALKQLQGHVVDGHKLEVRISERATKPAVTLARKKQVPRKQTTSKILV 836
Query: 144 GNIPFEAEEEELRKAFESCGEIDNVRLIRDQH-TNIGKGFGYVNFKAEEEELRKAFES 200
NIPF+A E+R+ F + GE+ VRL + T +GFG+V+F +++ ++AF +
Sbjct: 837 RNIPFQAHSREIRELFSTFGELKTVRLPKKMTGTGTHRGFGFVDFLTKQDA-KRAFNA 893
Score = 43.5 bits (101), Expect = 0.080, Method: Composition-based stats.
Identities = 46/189 (24%), Positives = 74/189 (39%), Gaps = 36/189 (19%)
Query: 66 TVRFRSVP-------VADITLPRKACIKMNKVHEKRTNMNAY--VRFKNLESVEKALEMN 116
TV+ R P V + P K + + V N Y V F N E V++AL+ N
Sbjct: 295 TVKLRGAPFNVTEKNVMEFLAPLKP-VAIRIVRNAHGNKTGYIFVDFSNEEEVKQALKCN 353
Query: 117 GHVIDEHTIRV--DKALTTTK------------------------SNSHSIFIGNIPFEA 150
+ I V +K + TTK + S +F+ N+P+ +
Sbjct: 354 REYMGGRYIEVFREKNVPTTKGAPKNTTKSWQGRILGENEEEEDLAESGRLFVRNLPYTS 413
Query: 151 EEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLI 210
EE+L K F G + + D T KGF ++ F E ++ E G++ R++
Sbjct: 414 TEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFITFMFPEHAVKAYSEVDGQVFQGRML 473
Query: 211 RDQHTNIGK 219
+ I K
Sbjct: 474 HVLPSTIKK 482
>gi|5912081|emb|CAB55987.1| hypothetical protein [Homo sapiens]
Length = 960
Score = 57.0 bits (136), Expect = 6e-06, Method: Composition-based stats.
Identities = 35/118 (29%), Positives = 60/118 (50%), Gaps = 17/118 (14%)
Query: 99 AYVRFKNLESVEKAL-EMNGHVIDEHTIRVD--------------KALTTTKSNSHSIFI 143
+V ++ E +KAL ++ GHV+D H + V K K + I +
Sbjct: 777 GFVEYRKPEQAQKALKQLQGHVVDGHKLEVRISERATKPAVTLARKKQVPRKQTTSKILV 836
Query: 144 GNIPFEAEEEELRKAFESCGEIDNVRLIRDQH-TNIGKGFGYVNFKAEEEELRKAFES 200
NIPF+A E+R+ F + GE+ VRL + T +GFG+V+F +++ ++AF +
Sbjct: 837 RNIPFQAHSREIRELFSTFGELKTVRLPKKMTGTGTHRGFGFVDFLTKQDA-KRAFNA 893
Score = 43.5 bits (101), Expect = 0.080, Method: Composition-based stats.
Identities = 46/189 (24%), Positives = 74/189 (39%), Gaps = 36/189 (19%)
Query: 66 TVRFRSVP-------VADITLPRKACIKMNKVHEKRTNMNAY--VRFKNLESVEKALEMN 116
TV+ R P V + P K + + V N Y V F N E V++AL+ N
Sbjct: 295 TVKLRGAPFNVTEKNVMEFLAPLKP-VAIRIVRNAHGNKTGYIFVDFSNEEEVKQALKCN 353
Query: 117 GHVIDEHTIRV--DKALTTTK------------------------SNSHSIFIGNIPFEA 150
+ I V +K + TTK + S +F+ N+P+ +
Sbjct: 354 REYMGGRYIEVFREKNVPTTKGAPKNTTKSWQGRILGENEEEEDLAESGRLFVRNLPYTS 413
Query: 151 EEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLI 210
EE+L K F G + + D T KGF ++ F E ++ E G++ R++
Sbjct: 414 TEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFITFMFPEHAVKAYSEVDGQVFQGRML 473
Query: 211 RDQHTNIGK 219
+ I K
Sbjct: 474 HVLPSTIKK 482
>gi|47221330|emb|CAF97248.1| unnamed protein product [Tetraodon nigroviridis]
Length = 312
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 56/106 (52%), Gaps = 1/106 (0%)
Query: 94 RTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKSNSHSIFIGNIPFEAEEE 153
R+ +V FK+ SVEK L+ H +D I +A+ K IF+G + EA EE
Sbjct: 95 RSRGFGFVLFKDPSSVEKVLQQKEHRLDGRLIDPKRAMAMKKEPVKKIFVGGLNPEATEE 154
Query: 154 ELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
+R+ F + GEI+N+ L D + +GF ++ +K EE +K E
Sbjct: 155 TIREYFGAFGEIENIDLPLDPKSKKRRGFIFITYK-EEASAKKCLE 199
>gi|410915346|ref|XP_003971148.1| PREDICTED: RNA-binding protein Musashi homolog 2-like isoform 3
[Takifugu rubripes]
Length = 328
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 58/115 (50%), Gaps = 5/115 (4%)
Query: 82 KACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVD-----KALTTTKS 136
+ C+ M KR+ +V F + SV+K L H +D TI +A +
Sbjct: 48 RECMVMRDPTTKRSRGFGFVTFTDAASVDKVLAQQHHELDSKTIDPKVAFPRRAQPKMVT 107
Query: 137 NSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEE 191
+ IF+G + E++++ FE G++D+ L+ D+ TN +GFG++ F+ E+
Sbjct: 108 RTKKIFVGGLSANTVVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFITFENED 162
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 32/148 (21%), Positives = 60/148 (40%), Gaps = 50/148 (33%)
Query: 130 ALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF-- 187
+L ++ + +FIG + ++ + LR F GEI ++RD T +GFG+V F
Sbjct: 12 SLNDSQHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFTD 71
Query: 188 ----------------------------KAEE--------------------EELRKAFE 199
+A+ E++++ FE
Sbjct: 72 AASVDKVLAQQHHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFE 131
Query: 200 SCGEIDNVRLIRDQHTNIGKGFGYVNFK 227
G++D+ L+ D+ TN +GFG++ F+
Sbjct: 132 QFGKVDDAMLMFDKTTNRHRGFGFITFE 159
>gi|402887773|ref|XP_003907256.1| PREDICTED: probable RNA-binding protein 19 [Papio anubis]
Length = 998
Score = 57.0 bits (136), Expect = 6e-06, Method: Composition-based stats.
Identities = 34/118 (28%), Positives = 61/118 (51%), Gaps = 17/118 (14%)
Query: 99 AYVRFKNLESVEKAL-EMNGHVIDEHTIRVDKALTTTK--------------SNSHSIFI 143
+V ++ E +KAL ++ GH++D H + V + TK + I +
Sbjct: 815 GFVEYRKPEQAQKALKQLQGHIVDGHKLEVRISERATKPAVTSARKKQVPRTQTTSKILV 874
Query: 144 GNIPFEAEEEELRKAFESCGEIDNVRLIRDQH-TNIGKGFGYVNFKAEEEELRKAFES 200
NIPF+A E+R+ F + GE+ VRL + T +GFG+V+F +++ ++AF +
Sbjct: 875 RNIPFQAHSREIRELFSTFGELKTVRLPKKMTGTGTHRGFGFVDFLTKQDA-KRAFNA 931
Score = 42.7 bits (99), Expect = 0.12, Method: Composition-based stats.
Identities = 46/189 (24%), Positives = 73/189 (38%), Gaps = 36/189 (19%)
Query: 66 TVRFRSVP-------VADITLPRKACIKMNKVHEKRTNMNAY--VRFKNLESVEKALEMN 116
TV+ R P V + P K + + V N Y V F N E V++AL+ N
Sbjct: 333 TVKLRGAPFNVTEKNVTEFLAPLKP-VAIRIVRNAHGNKTGYIFVDFSNEEEVKQALKCN 391
Query: 117 GHVIDEHTIRV--DKALTTTK------------------------SNSHSIFIGNIPFEA 150
+ I V +K + TT + S +F+ N+P+ +
Sbjct: 392 REYMGGRYIEVFREKNIPTTNVAPKNTTKSWQGRMLGENEEEEDLAESGRLFVRNLPYTS 451
Query: 151 EEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLI 210
EE+L K F G + + D T KGF +V F E ++ E G++ R++
Sbjct: 452 TEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHGVKAYSEVDGQVFQGRML 511
Query: 211 RDQHTNIGK 219
+ I K
Sbjct: 512 HVLPSTIKK 520
>gi|226497574|ref|NP_057280.2| probable RNA-binding protein 19 [Homo sapiens]
gi|226497654|ref|NP_001140170.1| probable RNA-binding protein 19 [Homo sapiens]
gi|226497734|ref|NP_001140171.1| probable RNA-binding protein 19 [Homo sapiens]
gi|308153566|sp|Q9Y4C8.3|RBM19_HUMAN RecName: Full=Probable RNA-binding protein 19; AltName:
Full=RNA-binding motif protein 19
Length = 960
Score = 57.0 bits (136), Expect = 6e-06, Method: Composition-based stats.
Identities = 35/118 (29%), Positives = 60/118 (50%), Gaps = 17/118 (14%)
Query: 99 AYVRFKNLESVEKAL-EMNGHVIDEHTIRVD--------------KALTTTKSNSHSIFI 143
+V ++ E +KAL ++ GHV+D H + V K K + I +
Sbjct: 777 GFVEYRKPEQAQKALKQLQGHVVDGHKLEVRISERATKPAVTLARKKQVPRKQTTSKILV 836
Query: 144 GNIPFEAEEEELRKAFESCGEIDNVRLIRDQH-TNIGKGFGYVNFKAEEEELRKAFES 200
NIPF+A E+R+ F + GE+ VRL + T +GFG+V+F +++ ++AF +
Sbjct: 837 RNIPFQAHSREIRELFSTFGELKTVRLPKKMTGTGTHRGFGFVDFLTKQDA-KRAFNA 893
Score = 43.5 bits (101), Expect = 0.080, Method: Composition-based stats.
Identities = 46/189 (24%), Positives = 74/189 (39%), Gaps = 36/189 (19%)
Query: 66 TVRFRSVP-------VADITLPRKACIKMNKVHEKRTNMNAY--VRFKNLESVEKALEMN 116
TV+ R P V + P K + + V N Y V F N E V++AL+ N
Sbjct: 295 TVKLRGAPFNVTEKNVMEFLAPLKP-VAIRIVRNAHGNKTGYIFVDFSNEEEVKQALKCN 353
Query: 117 GHVIDEHTIRV--DKALTTTK------------------------SNSHSIFIGNIPFEA 150
+ I V +K + TTK + S +F+ N+P+ +
Sbjct: 354 REYMGGRYIEVFREKNVPTTKGAPKNTTKSWQGRILGENEEEEDLAESGRLFVRNLPYTS 413
Query: 151 EEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLI 210
EE+L K F G + + D T KGF ++ F E ++ E G++ R++
Sbjct: 414 TEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFITFMFPEHAVKAYSEVDGQVFQGRML 473
Query: 211 RDQHTNIGK 219
+ I K
Sbjct: 474 HVLPSTIKK 482
>gi|89266511|gb|ABD65547.1| heterogeneous nuclear ribonucleoprotein-like [Ictalurus punctatus]
Length = 236
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 67/128 (52%), Gaps = 14/128 (10%)
Query: 94 RTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKA-LTTTKSNSHSIFIGNIPFEAEE 152
R+ +V FK+ +SV++ LE+ H +D I +A K +F+G + E E
Sbjct: 10 RSRGFGFVLFKDAQSVDRVLELKEHKLDGKLIDPKRAKAMKGKEPPKKVFVGGLRPETSE 69
Query: 153 EELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRD 212
E++R+ F S G+I+N+ L D +TN +GF +V + +EE + K L+ +
Sbjct: 70 EQIREYFGSYGDIENIELPVDSNTNERRGFCFVTY-VDEEPVTK------------LLEN 116
Query: 213 QHTNIGKG 220
++ N+G G
Sbjct: 117 RYHNVGAG 124
>gi|215820610|ref|NP_001135964.1| RNA binding motif protein 39 [Nasonia vitripennis]
Length = 516
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 61/115 (53%), Gaps = 15/115 (13%)
Query: 99 AYVRFKNLESVEKALEMNGH------VIDEHTI--------RVDKALTTTKSNSHSIFIG 144
AYV FK+ ESV AL ++G ++ +HT + + ++ +++G
Sbjct: 201 AYVEFKDPESVTLALGLSGQKLLGVPIVVQHTQAEKNRMGNSMPNLMPKGQTGPMRLYVG 260
Query: 145 NIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
++ F EE L+ FE G+I+N++LI D T KG+G++ F+ ++ +KA E
Sbjct: 261 SLLFNITEEMLKGIFEPFGKIENIQLIMDPETGRSKGYGFLTFR-NADDAKKALE 314
>gi|365760560|gb|EHN02272.1| Nsr1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 371
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 49/144 (34%), Positives = 70/144 (48%), Gaps = 22/144 (15%)
Query: 87 MNKVHEKRTNMNAYVRFKNLESVEKAL-EMNGHVIDEHTIRVDKALTTTKSN-------- 137
+N+ R+ YV F+N EKA+ EM G ID I D + + N
Sbjct: 173 INERGTDRSRGYGYVDFENKSYAEKAIQEMQGKEIDGRPINCDLSTSKPAGNNTNDRAKK 232
Query: 138 --------SHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKA 189
S ++F+GN+ F A+ + + + F GE+ +VR+ T KGFGYV F +
Sbjct: 233 FGDTPSEPSDTLFLGNLSFNADRDTIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSS 292
Query: 190 EEEELRKAFESC-GE-IDN--VRL 209
E+ +KA ES GE IDN VRL
Sbjct: 293 LEDS-KKALESLQGEYIDNRPVRL 315
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 34/49 (69%)
Query: 140 SIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK 188
+IF+G + + ++E L+K FE G + + R+I ++ T+ +G+GYV+F+
Sbjct: 142 TIFVGRLSWSIDDEWLKKEFEHIGGVISARVINERGTDRSRGYGYVDFE 190
Score = 37.0 bits (84), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 31/45 (68%)
Query: 183 GYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK 227
G +++ ++E L+K FE G + + R+I ++ T+ +G+GYV+F+
Sbjct: 146 GRLSWSIDDEWLKKEFEHIGGVISARVINERGTDRSRGYGYVDFE 190
>gi|168278697|dbj|BAG11228.1| RNA binding motif protein 19 [synthetic construct]
Length = 960
Score = 57.0 bits (136), Expect = 6e-06, Method: Composition-based stats.
Identities = 35/118 (29%), Positives = 60/118 (50%), Gaps = 17/118 (14%)
Query: 99 AYVRFKNLESVEKAL-EMNGHVIDEHTIRVD--------------KALTTTKSNSHSIFI 143
+V ++ E +KAL ++ GHV+D H + V K K + I +
Sbjct: 777 GFVEYRKPEQAQKALKQLQGHVVDGHKLEVRISERATKPAVTLARKKQVPRKQTTSKILV 836
Query: 144 GNIPFEAEEEELRKAFESCGEIDNVRLIRDQH-TNIGKGFGYVNFKAEEEELRKAFES 200
NIPF+A E+R+ F + GE+ VRL + T +GFG+V+F +++ ++AF +
Sbjct: 837 RNIPFQAHSREIRELFSTFGELKTVRLPKKMTGTGTHRGFGFVDFLTKQDA-KRAFNA 893
Score = 43.1 bits (100), Expect = 0.085, Method: Composition-based stats.
Identities = 46/189 (24%), Positives = 74/189 (39%), Gaps = 36/189 (19%)
Query: 66 TVRFRSVP-------VADITLPRKACIKMNKVHEKRTNMNAY--VRFKNLESVEKALEMN 116
TV+ R P V + P K + + V N Y V F N E V++AL+ N
Sbjct: 295 TVKLRGAPFNVTEKNVMEFLAPLKP-VAIRIVRNAHGNKTGYIFVDFSNEEEVKQALKCN 353
Query: 117 GHVIDEHTIRV--DKALTTTK------------------------SNSHSIFIGNIPFEA 150
+ I V +K + TTK + S +F+ N+P+ +
Sbjct: 354 REYMGGRYIEVFREKNVPTTKGAPKNTTKSWQGRILGENEEEEDLAESGRLFVRNLPYTS 413
Query: 151 EEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLI 210
EE+L K F G + + D T KGF ++ F E ++ E G++ R++
Sbjct: 414 TEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFITFMFPEHAVKAYSEVDGQVFQGRML 473
Query: 211 RDQHTNIGK 219
+ I K
Sbjct: 474 HVLPSTIKK 482
>gi|158256324|dbj|BAF84133.1| unnamed protein product [Homo sapiens]
gi|189054403|dbj|BAG37176.1| unnamed protein product [Homo sapiens]
Length = 960
Score = 57.0 bits (136), Expect = 6e-06, Method: Composition-based stats.
Identities = 35/118 (29%), Positives = 60/118 (50%), Gaps = 17/118 (14%)
Query: 99 AYVRFKNLESVEKAL-EMNGHVIDEHTIRVD--------------KALTTTKSNSHSIFI 143
+V ++ E +KAL ++ GHV+D H + V K K + I +
Sbjct: 777 GFVEYRKPEQAQKALKQLQGHVVDGHKLEVRISERATKPAVTLARKKQVPRKQTTSKILV 836
Query: 144 GNIPFEAEEEELRKAFESCGEIDNVRLIRDQH-TNIGKGFGYVNFKAEEEELRKAFES 200
NIPF+A E+R+ F + GE+ VRL + T +GFG+V+F +++ ++AF +
Sbjct: 837 RNIPFQAHSREIRELFSTFGELKTVRLPKKMTGTGTHRGFGFVDFLTKQDA-KRAFNA 893
Score = 43.1 bits (100), Expect = 0.085, Method: Composition-based stats.
Identities = 46/189 (24%), Positives = 74/189 (39%), Gaps = 36/189 (19%)
Query: 66 TVRFRSVP-------VADITLPRKACIKMNKVHEKRTNMNAY--VRFKNLESVEKALEMN 116
TV+ R P V + P K + + V N Y V F N E V++AL+ N
Sbjct: 295 TVKLRGAPFNVTEKNVMEFLAPLKP-VAIRIVRNAHGNKTGYIFVDFSNEEEVKQALKCN 353
Query: 117 GHVIDEHTIRV--DKALTTTK------------------------SNSHSIFIGNIPFEA 150
+ I V +K + TTK + S +F+ N+P+ +
Sbjct: 354 REYMGGRYIEVFREKNVPTTKGAPKNTTKSWQGRILGENEEEEDLAESGRLFVRNLPYTS 413
Query: 151 EEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLI 210
EE+L K F G + + D T KGF ++ F E ++ E G++ R++
Sbjct: 414 TEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFITFMFPEHAVKAYSEVDGQVFQGRML 473
Query: 211 RDQHTNIGK 219
+ I K
Sbjct: 474 HVLPSTIKK 482
>gi|119618468|gb|EAW98062.1| RNA binding motif protein 19, isoform CRA_a [Homo sapiens]
gi|119618469|gb|EAW98063.1| RNA binding motif protein 19, isoform CRA_a [Homo sapiens]
Length = 777
Score = 57.0 bits (136), Expect = 6e-06, Method: Composition-based stats.
Identities = 35/118 (29%), Positives = 60/118 (50%), Gaps = 17/118 (14%)
Query: 99 AYVRFKNLESVEKAL-EMNGHVIDEHTIRVD--------------KALTTTKSNSHSIFI 143
+V ++ E +KAL ++ GHV+D H + V K K + I +
Sbjct: 594 GFVEYRKPEQAQKALKQLQGHVVDGHKLEVRISERATKPAVTLARKKQVPRKQTTSKILV 653
Query: 144 GNIPFEAEEEELRKAFESCGEIDNVRLIRDQH-TNIGKGFGYVNFKAEEEELRKAFES 200
NIPF+A E+R+ F + GE+ VRL + T +GFG+V+F +++ ++AF +
Sbjct: 654 RNIPFQAHSREIRELFSTFGELKTVRLPKKMTGTGTHRGFGFVDFLTKQDA-KRAFNA 710
>gi|348531962|ref|XP_003453476.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A/B-like
[Oreochromis niloticus]
Length = 315
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 61/115 (53%), Gaps = 2/115 (1%)
Query: 85 IKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKSNSHSIFIG 144
IKM+ + R+ +V FK+ SV+K LE H +D I +A+ K IF+G
Sbjct: 87 IKMDS-NTGRSRGFGFVLFKDSASVDKVLEQKEHRLDGRNIDPKRAMAMKKDPVKKIFVG 145
Query: 145 NIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
+ EA EE +R+ F + GEI+ + L D + +GF ++ +K EE ++K E
Sbjct: 146 GLNPEATEETIREYFGAFGEIETIELPIDPKSKKRRGFIFITYK-EETSVKKCLE 199
>gi|81917948|sp|Q9Z130.1|HNRDL_MOUSE RecName: Full=Heterogeneous nuclear ribonucleoprotein D-like;
Short=hnRNP D-like; Short=hnRNP DL; AltName:
Full=JKT41-binding protein
gi|4514631|dbj|BAA75479.1| JKTBP [Mus musculus]
gi|18203892|gb|AAH21374.1| Heterogeneous nuclear ribonucleoprotein D-like [Mus musculus]
gi|74196730|dbj|BAE43104.1| unnamed protein product [Mus musculus]
gi|148688362|gb|EDL20309.1| heterogeneous nuclear ribonucleoprotein D-like, isoform CRA_b [Mus
musculus]
Length = 301
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 83/192 (43%), Gaps = 30/192 (15%)
Query: 21 MSKLKVFLNIWKMALKLKMNPSLTKSKNHAL-----------SSVTSMFKPYGEVETVRF 69
M + + NI + A K+N S + + + +T +GEV
Sbjct: 1 MEDMNEYSNIEEFAEGSKINASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTI 60
Query: 70 RSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDK 129
++ PV R+ +V FK+ SV+K LE+ H +D I +
Sbjct: 61 KTDPVT-----------------GRSRGFGFVLFKDAASVDKVLELKEHKLDGKLIDPKR 103
Query: 130 ALT-TTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK 188
A K +F+G + + EE++++ F + GEI+N+ L D TN +GF ++ +
Sbjct: 104 AKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITY- 162
Query: 189 AEEEELRKAFES 200
+EE ++K ES
Sbjct: 163 TDEEPVKKLLES 174
>gi|341893520|gb|EGT49455.1| CBN-TIAR-2 protein [Caenorhabditis brenneri]
Length = 420
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 63/124 (50%), Gaps = 11/124 (8%)
Query: 99 AYVRFKNLESVEKALE-MNGHVIDEHTIRVDKALTTTKSNSHS----------IFIGNIP 147
A++ F + +AL+ MNG + + +RV+ A+ + S +F+G++
Sbjct: 81 AFIEFSDHNQAAQALQSMNGRQLLDRELRVNWAVEPNQPGDSSRKMDYSRHFHVFVGDLS 140
Query: 148 FEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNV 207
E + +L++AF GE+ ++IRD TN KG+G+V++ E+ R + G+
Sbjct: 141 SEIDSTKLKEAFLPFGEVSEAKIIRDTTTNKAKGYGFVSYPRREDAERAIEQMNGQWLGR 200
Query: 208 RLIR 211
R IR
Sbjct: 201 RTIR 204
>gi|145531030|ref|XP_001451287.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124418931|emb|CAK83890.1| unnamed protein product [Paramecium tetraurelia]
Length = 232
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 62/112 (55%), Gaps = 8/112 (7%)
Query: 99 AYVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKSNS-------HSIFIGNIPFEAE 151
++ F + ++++KAL +NG + I V +A T H+IF+ N+ ++
Sbjct: 46 GHITFNDSDAIQKALALNGSQLGGRYIDVKEAKGTQSQKPSVPPPECHTIFVKNLSYDLN 105
Query: 152 EEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGE 203
+++ +F CG++ NVR++ + T+ KGF Y++F+ + + + KA + G+
Sbjct: 106 ADQIGDSFRPCGKVANVRMVYNTVTDNFKGFAYIDFE-DHQSVIKALQMNGK 156
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/141 (21%), Positives = 57/141 (40%), Gaps = 52/141 (36%)
Query: 139 HSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEE------- 191
+FI +P+ A E +++ FE CGEI +++L R Q +N G+G++ F +
Sbjct: 2 QQVFISGLPYTASENDVQTLFEECGEILSIKLPRYQDSNRLLGYGHITFNDSDAIQKALA 61
Query: 192 ---------------------------------------------EELRKAFESCGEIDN 206
+++ +F CG++ N
Sbjct: 62 LNGSQLGGRYIDVKEAKGTQSQKPSVPPPECHTIFVKNLSYDLNADQIGDSFRPCGKVAN 121
Query: 207 VRLIRDQHTNIGKGFGYVNFK 227
VR++ + T+ KGF Y++F+
Sbjct: 122 VRMVYNTVTDNFKGFAYIDFE 142
>gi|258566776|ref|XP_002584132.1| predicted protein [Uncinocarpus reesii 1704]
gi|237905578|gb|EEP79979.1| predicted protein [Uncinocarpus reesii 1704]
Length = 547
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 52/112 (46%), Gaps = 14/112 (12%)
Query: 76 DITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTK 135
D+ LP + + E+RT A F GH DE + + L
Sbjct: 31 DLPLPTSSESRTGYGGERRTYGGAPASF-------------GHERDERGYSIREELPLPT 77
Query: 136 SNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 187
++ IGN+ F+A + ++ + F SC E+ NVR++ D+ T KGFGYV F
Sbjct: 78 QPPYTAHIGNMSFDATQADIAELFASC-EVTNVRIVEDKLTRAPKGFGYVEF 128
Score = 41.6 bits (96), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 182 FGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 226
G ++F A + ++ + F SC E+ NVR++ D+ T KGFGYV F
Sbjct: 85 IGNMSFDATQADIAELFASC-EVTNVRIVEDKLTRAPKGFGYVEF 128
>gi|149046813|gb|EDL99587.1| heterogeneous nuclear ribonucleoprotein D-like, isoform CRA_b
[Rattus norvegicus]
Length = 300
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 83/192 (43%), Gaps = 30/192 (15%)
Query: 21 MSKLKVFLNIWKMALKLKMNPSLTKSKNHAL-----------SSVTSMFKPYGEVETVRF 69
M + + NI + A K+N S + + + +T +GEV
Sbjct: 1 MEDMNEYSNIEEFAEGSKINASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTI 60
Query: 70 RSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDK 129
++ PV R+ +V FK+ SV+K LE+ H +D I +
Sbjct: 61 KTDPVT-----------------GRSRGFGFVLFKDAASVDKVLELKEHKLDGKLIDPKR 103
Query: 130 ALT-TTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK 188
A K +F+G + + EE++++ F + GEI+N+ L D TN +GF ++ +
Sbjct: 104 AKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITY- 162
Query: 189 AEEEELRKAFES 200
+EE ++K ES
Sbjct: 163 TDEEPVKKLLES 174
>gi|2780748|dbj|BAA24361.1| hnRNP JKTBP [Homo sapiens]
gi|4512255|dbj|BAA75240.1| JKTBP1 [Homo sapiens]
Length = 301
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 83/192 (43%), Gaps = 30/192 (15%)
Query: 21 MSKLKVFLNIWKMALKLKMNPSLTKSKNHAL-----------SSVTSMFKPYGEVETVRF 69
M + + NI + A K+N S + + + +T +GEV
Sbjct: 1 MEDMNEYSNIEEFAEGSKINASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTI 60
Query: 70 RSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDK 129
++ PV R+ +V FK+ SV+K LE+ H +D I +
Sbjct: 61 KTDPVT-----------------GRSRGFGFVLFKDAASVDKVLELKEHKLDGKLIDPKR 103
Query: 130 ALT-TTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK 188
A K +F+G + + EE++++ F + GEI+N+ L D TN +GF ++ +
Sbjct: 104 AKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITY- 162
Query: 189 AEEEELRKAFES 200
+EE ++K ES
Sbjct: 163 TDEEPVKKLLES 174
>gi|385305287|gb|EIF49275.1| nuclear localization sequence binding protein [Dekkera bruxellensis
AWRI1499]
Length = 358
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 67/140 (47%), Gaps = 23/140 (16%)
Query: 94 RTNMNAYVRFKNLESVEKALE-MNGHVIDEHTIRVDKALTTTKSNS-------------- 138
R+ YV F ++ E A++ +G ID + +D A + +S+S
Sbjct: 149 RSKGFGYVDFDSVAHAEAAVKKYDGAEIDGRAVHLDMAASKPRSSSPNDRANNRAKKYGD 208
Query: 139 ------HSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEE 192
++F+GN+ FEA +++R AFES G I+ +R+ T +GF YV F + E
Sbjct: 209 TPSEPSDTLFVGNLSFEATMDDVRGAFESFGSIEXIRIPTRPGTEDPRGFAYVQFSS-VE 267
Query: 193 ELRKAFESC-GEIDNVRLIR 211
E + A + GE N R +R
Sbjct: 268 EAKAALDGMNGEYINGRSVR 287
>gi|67521990|ref|XP_659056.1| hypothetical protein AN1452.2 [Aspergillus nidulans FGSC A4]
gi|74598186|sp|Q5BDC8.1|NOP12_EMENI RecName: Full=Nucleolar protein 12
gi|40745426|gb|EAA64582.1| hypothetical protein AN1452.2 [Aspergillus nidulans FGSC A4]
gi|259486763|tpe|CBF84884.1| TPA: Nucleolar protein 12 [Source:UniProtKB/Swiss-Prot;Acc:Q5BDC8]
[Aspergillus nidulans FGSC A4]
Length = 520
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 90/185 (48%), Gaps = 24/185 (12%)
Query: 51 LSSVTSMFKPYGEVETVRFRSVPVADI-TLPRKACIKMNKVHEKRT-NMNAYVRFKNLES 108
LS++ P+ +++++RFRS A +P++A ++H+ T + NAY + ++
Sbjct: 220 LSTLPESTGPH-KIDSIRFRSTAFASGGKIPKRAAFAKQEIHDDTTPSTNAYAVYSTAQA 278
Query: 109 VEKALE-MNGHVIDEHTIRVDKALTTTK-SNSHSIFIGNIPF-----EAEEEELRKAFES 161
+KA +NG V+ + +RVD K + +F+GN+ F EE E +K
Sbjct: 279 AKKAPAALNGTVVLDRHLRVDNVAHPAKVDHKRCVFVGNLDFIDNETGTEEGEKKKKNRP 338
Query: 162 CGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGF 221
+++ +G + F A + + G +++VR++RD+ T +GKGF
Sbjct: 339 PADVE-------------EGL-WRTFNAHTKASQSGPAGRGNVESVRVVRDRSTRVGKGF 384
Query: 222 GYVNF 226
YV F
Sbjct: 385 AYVQF 389
>gi|440635298|gb|ELR05217.1| hypothetical protein GMDG_01655 [Geomyces destructans 20631-21]
Length = 503
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 63/121 (52%), Gaps = 9/121 (7%)
Query: 99 AYVRFKNLESVEKALE-MNGHVIDEHTIRVDKALTTTKSNSHS------IFIGNIPFEAE 151
+V + + + E+A++ +NG + + IRV+ A + SN IF+G++ E
Sbjct: 135 GFVEYDDPGAAERAMQTLNGRRVHQAEIRVNWAYQSNTSNKEDTSNHFHIFVGDLSNEVN 194
Query: 152 EEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESC-GEIDNVRLI 210
+E L +AF + G + R++ D T +G+G+V F+ E ++ KA S GE R I
Sbjct: 195 DEVLLQAFCAFGSVSEARVMWDMKTGRSRGYGFVAFR-ERQDAEKALSSMDGEWLGSRAI 253
Query: 211 R 211
R
Sbjct: 254 R 254
Score = 39.7 bits (91), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 30/50 (60%)
Query: 135 KSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGY 184
+ N ++++G + E+ LR+ FE+ G + NV++I D++ KGF Y
Sbjct: 85 EPNKRALYVGGLDPRVTEDVLRQIFETTGHVQNVKIIPDKNVGASKGFNY 134
>gi|224049399|ref|XP_002190694.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D0 isoform 1
[Taeniopygia guttata]
gi|449499942|ref|XP_004175399.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D0 [Taeniopygia
guttata]
Length = 318
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 60/111 (54%), Gaps = 10/111 (9%)
Query: 94 RTNMNAYVRFKNLESVEKALE-----MNGHVIDEHTIRVDKALTTTKSNSHSIFIGNIPF 148
R+ +V FK ESV+K ++ +NG VID + K TK IF+G +
Sbjct: 99 RSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMK----TKEPVKKIFVGGLSP 154
Query: 149 EAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
+ EE++R+ F GE++++ L D TN +GF ++ FK EEE ++K E
Sbjct: 155 DTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFK-EEEPVKKIME 204
Score = 37.4 bits (85), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 30/133 (22%), Positives = 52/133 (39%), Gaps = 46/133 (34%)
Query: 141 IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK------------ 188
+FIG + ++ +++L+ F GE+ + L D T +GFG+V FK
Sbjct: 62 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 121
Query: 189 ----------------------------------AEEEELRKAFESCGEIDNVRLIRDQH 214
EE++R+ F GE++++ L D
Sbjct: 122 EHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNK 181
Query: 215 TNIGKGFGYVNFK 227
TN +GF ++ FK
Sbjct: 182 TNKRRGFCFITFK 194
>gi|406867619|gb|EKD20657.1| RNA recognition motif containing protein [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 339
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 37/55 (67%)
Query: 134 TKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK 188
+K+ S S+F+GNIP+ EE++ + F + G++ N RL+ D+ T KGFG+V F
Sbjct: 2 SKAPSKSVFVGNIPYGLTEEQIIRIFSTAGKVLNFRLVYDRETGRPKGFGFVEFP 56
Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 32/54 (59%)
Query: 183 GYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKVSFTTLSSI 236
G + + EE++ + F + G++ N RL+ D+ T KGFG+V F S + S++
Sbjct: 12 GNIPYGLTEEQIIRIFSTAGKVLNFRLVYDRETGRPKGFGFVEFPDSDSAASAV 65
>gi|47086935|ref|NP_998467.1| heterogeneous nuclear ribonucleoprotein A/B [Danio rerio]
gi|44890703|gb|AAH66681.1| Zgc:77052 [Danio rerio]
Length = 309
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 57/106 (53%), Gaps = 1/106 (0%)
Query: 85 IKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKSNSHSIFIG 144
IKM+ + R+ ++ FK +SV++ L+ H +D I +A+ K IF+G
Sbjct: 76 IKMDS-NTGRSRGFGFILFKESDSVDRVLQQKEHRLDGRQIDPKRAMAIKKEPVKKIFVG 134
Query: 145 NIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAE 190
+ E EE++R+ F S GEI+ + L D T+ +GF ++ FK E
Sbjct: 135 GLNPETTEEKIREYFGSFGEIETIELPTDPKTSKRRGFVFITFKEE 180
Score = 38.5 bits (88), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 29/140 (20%), Positives = 56/140 (40%), Gaps = 45/140 (32%)
Query: 137 NSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAE------ 190
++ +F+G + ++ +++L+ F GE+ + + D +T +GFG++ FK
Sbjct: 43 DAGKMFVGGLSWDTSKKDLKDYFSKFGEVMDCTIKMDSNTGRSRGFGFILFKESDSVDRV 102
Query: 191 ---------------------------------------EEELRKAFESCGEIDNVRLIR 211
EE++R+ F S GEI+ + L
Sbjct: 103 LQQKEHRLDGRQIDPKRAMAIKKEPVKKIFVGGLNPETTEEKIREYFGSFGEIETIELPT 162
Query: 212 DQHTNIGKGFGYVNFKVSFT 231
D T+ +GF ++ FK F
Sbjct: 163 DPKTSKRRGFVFITFKEEFA 182
>gi|242822492|ref|XP_002487897.1| nucleolin protein Nsr1, putative [Talaromyces stipitatus ATCC
10500]
gi|218712818|gb|EED12243.1| nucleolin protein Nsr1, putative [Talaromyces stipitatus ATCC
10500]
Length = 479
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 51/88 (57%), Gaps = 3/88 (3%)
Query: 121 DEHTIRVDKALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGK 180
+E K+ T + NS ++F+GN+ + +EE LR+ FE GE+ VR++ ++ + +
Sbjct: 213 EEPATNAKKSKTESADNSPNLFVGNLSWNVDEEWLRREFEEFGELSGVRIMTERESGRSR 272
Query: 181 GFGYVNFKAEEEELRKAFES--CGEIDN 206
GFGYV + A+ + A+E+ EID
Sbjct: 273 GFGYVEY-ADASSAKAAYEAKKDAEIDG 299
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 63/148 (42%), Gaps = 24/148 (16%)
Query: 87 MNKVHEKRTNMNAYVRFKNLESVEKALEMNGHV-IDEHTIRVDKALTTTKSN-------- 137
M + R+ YV + + S + A E ID TI +D A +N
Sbjct: 263 MTERESGRSRGFGYVEYADASSAKAAYEAKKDAEIDGRTINLDYAKPRDANNQAPREKAQ 322
Query: 138 -------------SHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGY 184
S+++F+GN+ F +E +R+ FE G+I +RL D T KG+GY
Sbjct: 323 NRARSFGDQTSPESNTLFVGNLVFGVDENAVREVFEGQGQIQGIRLPTDAETGRPKGYGY 382
Query: 185 VNFKAEEEELRKAFESCGEID-NVRLIR 211
V F + +E R+A D R IR
Sbjct: 383 VEF-SSVDEARQALNDLQGTDIGGRAIR 409
Score = 40.4 bits (93), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 29/44 (65%)
Query: 183 GYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 226
G +++ +EE LR+ FE GE+ VR++ ++ + +GFGYV +
Sbjct: 236 GNLSWNVDEEWLRREFEEFGELSGVRIMTERESGRSRGFGYVEY 279
>gi|391330636|ref|XP_003739762.1| PREDICTED: nucleolysin TIAR-like [Metaseiulus occidentalis]
Length = 364
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 58/113 (51%), Gaps = 10/113 (8%)
Query: 90 VHEKRTNMNAYVRFKNLESVEKAL-EMNGHVIDEHTIRVDKALTTTK---------SNSH 139
+HE ++ +V F N A+ MN + +RV+ A + + S H
Sbjct: 45 IHEPGSDPYCFVEFVNHSDASSAITAMNARMCLGRELRVNWASSAIQQQTPHRPDTSKHH 104
Query: 140 SIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEE 192
IF+G++ + E +LR+AF GEI + R+++D T KG+G+V+F +++
Sbjct: 105 HIFVGDLSPQIETSDLREAFSPFGEISDCRVVKDATTQKSKGYGFVSFTNKQD 157
Score = 42.0 bits (97), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 37/171 (21%), Positives = 67/171 (39%), Gaps = 50/171 (29%)
Query: 52 SSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEK 111
S + F P+GE+ R V D T +++ +V F N + E
Sbjct: 118 SDLREAFSPFGEISDCRV----VKDATT-------------QKSKGYGFVSFTNKQDAEN 160
Query: 112 ALE-MNGHVIDEHTIRV-------------------------DKALTTTKSNSHSIFIGN 145
A+ M+G + IR D+ + ++ +++ G
Sbjct: 161 AIHTMDGSWLGSRAIRTNWASRKPNHKETGSYIGGHHRALNYDEVFAQSSPSNCTVYCGG 220
Query: 146 IPFEAEEEE-LRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELR 195
+ A E+ LR+AF+ GEI ++RL +D KG+ ++ F ++E R
Sbjct: 221 LNQMASSEDFLRQAFDEFGEIVDIRLFKD------KGYAFIKFNSKESACR 265
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 25/37 (67%)
Query: 190 EEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 226
E +LR+AF GEI + R+++D T KG+G+V+F
Sbjct: 116 ETSDLREAFSPFGEISDCRVVKDATTQKSKGYGFVSF 152
>gi|171687054|ref|XP_001908468.1| hypothetical protein [Podospora anserina S mat+]
gi|170943488|emb|CAP69141.1| unnamed protein product [Podospora anserina S mat+]
Length = 481
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 62/121 (51%), Gaps = 9/121 (7%)
Query: 99 AYVRFKNLESVEKALE-MNGHVIDEHTIRVDKALTTTK------SNSHSIFIGNIPFEAE 151
+V + + S E+A++ +NG + + IRV+ A + SN IF+G++ E
Sbjct: 131 GFVEYDDPGSAERAMQTLNGRRVHQAEIRVNWAYQSNNTNKEDTSNHFHIFVGDLSNEVN 190
Query: 152 EEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESC-GEIDNVRLI 210
+E L +AF + G + R++ D T +G+G+V F+ + E KA S GE R I
Sbjct: 191 DEVLLQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFR-DRPEAEKALSSMDGEWLGSRAI 249
Query: 211 R 211
R
Sbjct: 250 R 250
>gi|108744009|gb|ABG02277.1| heterogeneous nuclear ribonucleoprotein A/B [Haplochromis burtoni]
Length = 316
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 61/115 (53%), Gaps = 2/115 (1%)
Query: 85 IKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKSNSHSIFIG 144
IKM+ + R+ +V FK+ SV+K LE H +D I +A+ K IF+G
Sbjct: 87 IKMDS-NTGRSRGFGFVLFKDSASVDKVLEQKEHRLDGRNIDPKRAMAMKKDPVKKIFVG 145
Query: 145 NIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
+ EA EE +R+ F + GEI+ + L D + +GF ++ +K EE ++K E
Sbjct: 146 GLNPEATEETIREYFGAFGEIETIELPIDPKSKKRRGFIFITYK-EETSVKKCLE 199
>gi|392410002|ref|YP_006446609.1| RRM domain-containing RNA-binding protein [Desulfomonile tiedjei
DSM 6799]
gi|390623138|gb|AFM24345.1| RRM domain-containing RNA-binding protein [Desulfomonile tiedjei
DSM 6799]
Length = 118
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 46/81 (56%), Gaps = 3/81 (3%)
Query: 115 MNGHVIDEHTIRVDKALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQ 174
MNG V I V+ + S+ + ++GNI F+ E+E+LR FE+ G++D ++I D+
Sbjct: 14 MNGRVC---CIPVEYPRKESPSDRNQFYVGNISFKTEDEQLRDLFETYGQVDAAKVIIDR 70
Query: 175 HTNIGKGFGYVNFKAEEEELR 195
T +GFG+V + LR
Sbjct: 71 ATGRSRGFGFVEMPDRDAGLR 91
Score = 45.1 bits (105), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 33/54 (61%)
Query: 183 GYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKVSFTTLSSI 236
G ++FK E+E+LR FE+ G++D ++I D+ T +GFG+V L +I
Sbjct: 40 GNISFKTEDEQLRDLFETYGQVDAAKVIIDRATGRSRGFGFVEMPDRDAGLRAI 93
>gi|390604168|gb|EIN13559.1| hypothetical protein PUNSTDRAFT_117298 [Punctularia strigosozonata
HHB-11173 SS5]
Length = 425
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 64/119 (53%), Gaps = 6/119 (5%)
Query: 99 AYVRFKNLESVEKALE-MNGHVIDEHTIRVDKALTTTK-----SNSHSIFIGNIPFEAEE 152
+V + ++ + E AL+ +NG I + IRV+ A + SN + +F+G++ E +
Sbjct: 62 GFVEYIDMRAAETALQTLNGRKIFDTEIRVNWAYQGNQNKEDTSNHYHVFVGDLSPEVND 121
Query: 153 EELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIR 211
E L+KAF + G + + R++ D ++ +G+G++ F+ + + + GE R IR
Sbjct: 122 EVLQKAFSAFGSLSDARVMWDMNSGKSRGYGFLAFRDKTDAEQAIATMNGEWLGSRAIR 180
>gi|242279034|ref|YP_002991163.1| RNP-1 like RNA-binding protein [Desulfovibrio salexigens DSM 2638]
gi|242121928|gb|ACS79624.1| RNP-1 like RNA-binding protein [Desulfovibrio salexigens DSM 2638]
Length = 87
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 51/92 (55%), Gaps = 17/92 (18%)
Query: 138 SHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKA 197
S +I++GN+P+ A EE++R +FE+ GE+ +V+LI D+ T +GFG+V
Sbjct: 2 SKNIYVGNLPWSATEEDVRASFEAYGEVVSVKLIEDRETGRPRGFGFVE----------- 50
Query: 198 FESCGEIDNVRLIRDQHTNIGKGFGYVNFKVS 229
+ G ID + + GK FG N KV+
Sbjct: 51 MDDNGAIDAIEALD------GKDFGGRNLKVN 76
>gi|260790683|ref|XP_002590371.1| hypothetical protein BRAFLDRAFT_216236 [Branchiostoma floridae]
gi|229275563|gb|EEN46382.1| hypothetical protein BRAFLDRAFT_216236 [Branchiostoma floridae]
Length = 222
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 36/56 (64%)
Query: 139 HSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEEL 194
S+F+GNIP+EA EE+L+ F G + + RL+ D+ T KG+G+ +K +E L
Sbjct: 18 RSVFVGNIPYEATEEQLKDIFSEVGPVISFRLVYDRETGKPKGYGFCEYKDQETAL 73
Score = 43.5 bits (101), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 32/54 (59%)
Query: 183 GYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKVSFTTLSSI 236
G + ++A EE+L+ F G + + RL+ D+ T KG+G+ +K T LS++
Sbjct: 23 GNIPYEATEEQLKDIFSEVGPVISFRLVYDRETGKPKGYGFCEYKDQETALSAM 76
>gi|193648018|ref|XP_001950341.1| PREDICTED: nucleolysin TIAR-like [Acyrthosiphon pisum]
Length = 388
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 57/115 (49%), Gaps = 10/115 (8%)
Query: 80 PRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALE-MNGHVIDEHTIRVDKALTTTK--- 135
P AC + E ++ A++ F AL MNG + + ++V+ A T
Sbjct: 33 PVNAC---KVIREPGSDPYAFLEFDTHSGAATALAAMNGRLFLDKEMKVNWATTPGNQPK 89
Query: 136 ---SNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 187
SN + IF+G++ E E L++AF GEI N R++RD T KG+ +V+F
Sbjct: 90 LDTSNHYHIFVGDLSPEIETHTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSF 144
>gi|109098882|ref|XP_001106082.1| PREDICTED: probable RNA-binding protein 19 [Macaca mulatta]
Length = 998
Score = 56.6 bits (135), Expect = 8e-06, Method: Composition-based stats.
Identities = 34/118 (28%), Positives = 61/118 (51%), Gaps = 17/118 (14%)
Query: 99 AYVRFKNLESVEKAL-EMNGHVIDEHTIRVDKALTTTK--------------SNSHSIFI 143
+V ++ E +KAL ++ GH++D H + V + TK + I +
Sbjct: 815 GFVEYRKPEQAQKALKQLQGHIVDGHKLEVRISERATKPAVTSARKKQVPRTQTTSKILV 874
Query: 144 GNIPFEAEEEELRKAFESCGEIDNVRLIRDQH-TNIGKGFGYVNFKAEEEELRKAFES 200
NIPF+A E+R+ F + GE+ VRL + T +GFG+V+F +++ ++AF +
Sbjct: 875 RNIPFQAHSREIRELFSTFGELKTVRLPKKMTGTGTHRGFGFVDFLTKQDA-KRAFNA 931
Score = 42.7 bits (99), Expect = 0.13, Method: Composition-based stats.
Identities = 46/189 (24%), Positives = 73/189 (38%), Gaps = 36/189 (19%)
Query: 66 TVRFRSVP-------VADITLPRKACIKMNKVHEKRTNMNAY--VRFKNLESVEKALEMN 116
TV+ R P V + P K + + V N Y V F N E V++AL+ N
Sbjct: 333 TVKLRGAPFNVTEKNVTEFLAPLKP-VAIRIVRNAHGNKTGYIFVDFSNEEEVKQALKCN 391
Query: 117 GHVIDEHTIRV--DKALTTTK------------------------SNSHSIFIGNIPFEA 150
+ I V +K + TT + S +F+ N+P+ +
Sbjct: 392 REYMGGRYIEVFREKNVPTTNVAPKNTTKSWQGRMLGENEEEEDLAESGRLFVRNLPYTS 451
Query: 151 EEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLI 210
EE+L K F G + + D T KGF +V F E ++ E G++ R++
Sbjct: 452 TEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYSEVDGQVFQGRML 511
Query: 211 RDQHTNIGK 219
+ I K
Sbjct: 512 HVLPSTIKK 520
>gi|367026720|ref|XP_003662644.1| hypothetical protein MYCTH_2303522 [Myceliophthora thermophila ATCC
42464]
gi|347009913|gb|AEO57399.1| hypothetical protein MYCTH_2303522 [Myceliophthora thermophila ATCC
42464]
Length = 500
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 62/121 (51%), Gaps = 9/121 (7%)
Query: 99 AYVRFKNLESVEKALE-MNGHVIDEHTIRVDKALTTTKSNSHS------IFIGNIPFEAE 151
+V + + + E+A++ +NG + + IRV+ A + SN IF+G++ E
Sbjct: 133 GFVEYDDPGAAERAMQTLNGRRVHQSEIRVNWAYQSNNSNKEDTSNHFHIFVGDLSNEVN 192
Query: 152 EEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESC-GEIDNVRLI 210
+E L +AF + G I R++ D T +G+G+V F+ E + KA S GE R I
Sbjct: 193 DEVLFQAFSAFGSISEARVMWDMKTGRSRGYGFVAFR-ERADAEKALSSMDGEWLGSRAI 251
Query: 211 R 211
R
Sbjct: 252 R 252
>gi|444721584|gb|ELW62314.1| Heterogeneous nuclear ribonucleoprotein D-like protein [Tupaia
chinensis]
Length = 301
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 62/113 (54%), Gaps = 3/113 (2%)
Query: 94 RTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALT-TTKSNSHSIFIGNIPFEAEE 152
R+ +V FK+ SV+K LE+ H +D I +A K +F+G + + E
Sbjct: 68 RSRGFGFVLFKDAASVDKVLELKEHKLDGKLIGPQRAKALKGKEPPKKVFVGGLSPDTSE 127
Query: 153 EELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFES-CGEI 204
E++++ F + GEI+N+ L D TN +GF ++ + +EE ++K ES C +I
Sbjct: 128 EQIKEYFGAFGEIENIELPMDTKTNERRGFCFITY-TDEEPVKKLLESRCHQI 179
>gi|296196172|ref|XP_002745745.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D0, partial
[Callithrix jacchus]
Length = 325
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 60/111 (54%), Gaps = 10/111 (9%)
Query: 94 RTNMNAYVRFKNLESVEKALE-----MNGHVIDEHTIRVDKALTTTKSNSHSIFIGNIPF 148
R+ +V FK ESV+K ++ +NG VID + K TK IF+G +
Sbjct: 106 RSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMK----TKEPVKKIFVGGLSP 161
Query: 149 EAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
+ EE++R+ F GE++++ L D TN +GF ++ FK EEE ++K E
Sbjct: 162 DTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFK-EEEPVKKIME 211
Score = 38.9 bits (89), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 31/142 (21%), Positives = 54/142 (38%), Gaps = 46/142 (32%)
Query: 132 TTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK--- 188
T + +FIG + ++ +++L+ F GE+ + L D T +GFG+V FK
Sbjct: 60 ATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESE 119
Query: 189 -------------------------------------------AEEEELRKAFESCGEID 205
EE++R+ F GE++
Sbjct: 120 SVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVE 179
Query: 206 NVRLIRDQHTNIGKGFGYVNFK 227
++ L D TN +GF ++ FK
Sbjct: 180 SIELPMDNKTNKRRGFCFITFK 201
>gi|349578366|dbj|GAA23532.1| K7_Nsr1p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 416
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 65/134 (48%), Gaps = 17/134 (12%)
Query: 94 RTNMNAYVRFKNLESVEKAL-EMNGHVIDEHTIRVDKALTTTKSN--------------S 138
R+ YV F+N EKA+ EM G ID I D + + N S
Sbjct: 209 RSRGYGYVDFENKSYAEKAIQEMQGKEIDGRPINCDMSTSKPAGNNDRAKKFGDTPSEPS 268
Query: 139 HSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAF 198
++F+GN+ F A+ + + + F GE+ +VR+ T KGFGYV F + E+ +KA
Sbjct: 269 DTLFLGNLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQF-SNMEDAKKAL 327
Query: 199 ESC-GEIDNVRLIR 211
++ GE + R +R
Sbjct: 328 DALQGEYIDNRPVR 341
Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 33/49 (67%)
Query: 140 SIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK 188
+IF+G + + ++E L+K FE G + R+I ++ T+ +G+GYV+F+
Sbjct: 171 TIFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFE 219
Score = 36.6 bits (83), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 30/45 (66%)
Query: 183 GYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK 227
G +++ ++E L+K FE G + R+I ++ T+ +G+GYV+F+
Sbjct: 175 GRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFE 219
>gi|242024531|ref|XP_002432681.1| RNA-binding protein squid, putative [Pediculus humanus corporis]
gi|212518151|gb|EEB19943.1| RNA-binding protein squid, putative [Pediculus humanus corporis]
Length = 295
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 64/134 (47%), Gaps = 21/134 (15%)
Query: 58 FKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNG 117
F +GE+E+V ++ P + R+ A++ FK++ES+EK +
Sbjct: 53 FSQFGEIESVSVKTDPASG-----------------RSRGFAFIVFKDVESIEKVMAAGD 95
Query: 118 HVIDEHTIRVDKALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTN 177
H+I+ I KA K+ IF+G + E EE++R F G I V L D+ N
Sbjct: 96 HIINCKKIDPKKA----KARHGKIFVGGLDVETSEEDIRNFFGQFGTILEVELPFDKQKN 151
Query: 178 IGKGFGYVNFKAEE 191
K F ++ F++E+
Sbjct: 152 QQKNFCFITFESEQ 165
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 34/56 (60%)
Query: 133 TTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK 188
+T ++ +F+G + +E ++ELR+ F GEI++V + D + +GF ++ FK
Sbjct: 27 STNNDDRKLFVGRLSWETTDKELREHFSQFGEIESVSVKTDPASGRSRGFAFIVFK 82
>gi|157126908|ref|XP_001661004.1| developmentally regulated RNA-binding protein [Aedes aegypti]
gi|108873104|gb|EAT37329.1| AAEL010665-PA [Aedes aegypti]
Length = 387
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 52/115 (45%), Gaps = 13/115 (11%)
Query: 99 AYVRFKNLESVEKALE-MNGHVIDEHTIRVDKALTTTKSNSHSIFIGN-----------I 146
AY++F +ALE MNG I +++ + + + N I
Sbjct: 70 AYIKFSKTSEAARALEEMNGKTIGDNSRPIKVLVAANRQQGSRKQTDNEEEKYLRLFVLI 129
Query: 147 PFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESC 201
P E EE LR+ F G IDN+ +IRD+ T GKGF YV F R AFE C
Sbjct: 130 PKEMTEESLREEFGQYGTIDNITIIRDKVTKEGKGFAYVKFSRFTHAAR-AFEEC 183
Score = 37.7 bits (86), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 152 EEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEI--DNVRL 209
E+ LR+ FE GEI+ + +++D+ + KG Y+ F E R E G+ DN R
Sbjct: 39 EDILREHFEKFGEIEEIWIVKDRQSGDAKGVAYIKFSKTSEAARALEEMNGKTIGDNSRP 98
Query: 210 IR 211
I+
Sbjct: 99 IK 100
>gi|51477708|ref|NP_001003810.1| heterogeneous nuclear ribonucleoprotein D0 isoform d [Homo sapiens]
gi|332819424|ref|XP_003310366.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D0 [Pan
troglodytes]
gi|395735086|ref|XP_003776520.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D0 isoform 3
[Pongo abelii]
gi|119626285|gb|EAX05880.1| heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA
binding protein 1, 37kDa), isoform CRA_g [Homo sapiens]
Length = 287
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 60/111 (54%), Gaps = 10/111 (9%)
Query: 94 RTNMNAYVRFKNLESVEKALE-----MNGHVIDEHTIRVDKALTTTKSNSHSIFIGNIPF 148
R+ +V FK ESV+K ++ +NG VID + K TK IF+G +
Sbjct: 117 RSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMK----TKEPVKKIFVGGLSP 172
Query: 149 EAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
+ EE++R+ F GE++++ L D TN +GF ++ FK EEE ++K E
Sbjct: 173 DTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFK-EEEPVKKIME 222
Score = 37.4 bits (85), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 30/142 (21%), Positives = 55/142 (38%), Gaps = 46/142 (32%)
Query: 132 TTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK--- 188
+ + + +FIG + ++ +++L+ F GE+ + L D T +GFG+V FK
Sbjct: 71 SKNEEDEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESE 130
Query: 189 -------------------------------------------AEEEELRKAFESCGEID 205
EE++R+ F GE++
Sbjct: 131 SVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVE 190
Query: 206 NVRLIRDQHTNIGKGFGYVNFK 227
++ L D TN +GF ++ FK
Sbjct: 191 SIELPMDNKTNKRRGFCFITFK 212
>gi|6321599|ref|NP_011675.1| Nsr1p [Saccharomyces cerevisiae S288c]
gi|128576|sp|P27476.1|NSR1_YEAST RecName: Full=Nuclear localization sequence-binding protein;
AltName: Full=p67
gi|4058|emb|CAA40472.1| nuclear localization sequence binding protein [Saccharomyces
cerevisiae]
gi|1045265|emb|CAA59817.1| NSR1 [Saccharomyces cerevisiae]
gi|1323271|emb|CAA97173.1| NSR1 [Saccharomyces cerevisiae]
gi|285812350|tpg|DAA08250.1| TPA: Nsr1p [Saccharomyces cerevisiae S288c]
gi|392299413|gb|EIW10507.1| Nsr1p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 414
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 65/134 (48%), Gaps = 17/134 (12%)
Query: 94 RTNMNAYVRFKNLESVEKAL-EMNGHVIDEHTIRVDKALTTTKSN--------------S 138
R+ YV F+N EKA+ EM G ID I D + + N S
Sbjct: 207 RSRGYGYVDFENKSYAEKAIQEMQGKEIDGRPINCDMSTSKPAGNNDRAKKFGDTPSEPS 266
Query: 139 HSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAF 198
++F+GN+ F A+ + + + F GE+ +VR+ T KGFGYV F + E+ +KA
Sbjct: 267 DTLFLGNLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQF-SNMEDAKKAL 325
Query: 199 ESC-GEIDNVRLIR 211
++ GE + R +R
Sbjct: 326 DALQGEYIDNRPVR 339
Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 33/49 (67%)
Query: 140 SIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK 188
+IF+G + + ++E L+K FE G + R+I ++ T+ +G+GYV+F+
Sbjct: 169 TIFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFE 217
Score = 36.6 bits (83), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 30/45 (66%)
Query: 183 GYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK 227
G +++ ++E L+K FE G + R+I ++ T+ +G+GYV+F+
Sbjct: 173 GRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFE 217
>gi|388854599|emb|CCF51756.1| uncharacterized protein [Ustilago hordei]
Length = 1235
Score = 56.6 bits (135), Expect = 8e-06, Method: Composition-based stats.
Identities = 41/146 (28%), Positives = 68/146 (46%), Gaps = 28/146 (19%)
Query: 52 SSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEK 111
SS+ S F PYG + VR+ P + R+ C YV+F S
Sbjct: 875 SSIRSTFSPYGLIFNVRW---PSKRFSSSRRFC---------------YVQFTTPSSASA 916
Query: 112 ALE-MNGHVIDE-HTIRV-------DKALTTTKSNSHSIFIGNIPFEAEEEELRKAFESC 162
A+E +NG + E T+ V K + N+ +F+ +P +EEL+ FE+
Sbjct: 917 AIEALNGKEVAEGRTLNVALSDPSRRKQRSDANENAKELFVSGLPRNITDEELKTYFEAY 976
Query: 163 GEIDNVRLIRDQHTNIGKGFGYVNFK 188
G++ VRL+R+ + +G G+V+F+
Sbjct: 977 GKVTGVRLLRNAEGGL-RGIGFVDFE 1001
>gi|357618214|gb|EHJ71282.1| hypothetical protein KGM_11355 [Danaus plexippus]
Length = 297
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 53/104 (50%), Gaps = 7/104 (6%)
Query: 93 KRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKS-----NSHSIFIGNIP 147
+R+ ++ F+ SV+K L + H +D R+D T KS + IF+G +
Sbjct: 68 QRSRGFGFITFQEAASVDKVLAVPVHTLDGK--RIDPKHATPKSAPKPAKTKKIFVGGVG 125
Query: 148 FEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEE 191
+ +E+R F G +++ ++ DQ T +GFG+V F +EE
Sbjct: 126 QDTSADEVRAYFAQFGAVEDAVMLMDQQTKRHRGFGFVTFHSEE 169
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/148 (19%), Positives = 55/148 (37%), Gaps = 48/148 (32%)
Query: 127 VDKALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVN 186
V A T + +F+G + ++ E+LR+ F G + +V +++D T +GFG++
Sbjct: 18 VTTATGNTSPSPSKLFVGGLSWQTSSEKLREYFAMFGAVTDVLIMKDPVTQRSRGFGFIT 77
Query: 187 FK------------------------------------------------AEEEELRKAF 198
F+ +E+R F
Sbjct: 78 FQEAASVDKVLAVPVHTLDGKRIDPKHATPKSAPKPAKTKKIFVGGVGQDTSADEVRAYF 137
Query: 199 ESCGEIDNVRLIRDQHTNIGKGFGYVNF 226
G +++ ++ DQ T +GFG+V F
Sbjct: 138 AQFGAVEDAVMLMDQQTKRHRGFGFVTF 165
>gi|410957357|ref|XP_003985295.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D0, partial
[Felis catus]
Length = 290
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 60/111 (54%), Gaps = 10/111 (9%)
Query: 94 RTNMNAYVRFKNLESVEKALE-----MNGHVIDEHTIRVDKALTTTKSNSHSIFIGNIPF 148
R+ +V FK ESV+K ++ +NG VID + K TK IF+G +
Sbjct: 71 RSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMK----TKEPVKKIFVGGLSP 126
Query: 149 EAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
+ EE++R+ F GE++++ L D TN +GF ++ FK EEE ++K E
Sbjct: 127 DTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFK-EEEPVKKIME 176
Score = 38.9 bits (89), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 31/142 (21%), Positives = 54/142 (38%), Gaps = 46/142 (32%)
Query: 132 TTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK--- 188
T + +FIG + ++ +++L+ F GE+ + L D T +GFG+V FK
Sbjct: 25 ATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESE 84
Query: 189 -------------------------------------------AEEEELRKAFESCGEID 205
EE++R+ F GE++
Sbjct: 85 SVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVE 144
Query: 206 NVRLIRDQHTNIGKGFGYVNFK 227
++ L D TN +GF ++ FK
Sbjct: 145 SIELPMDNKTNKRRGFCFITFK 166
>gi|226528044|dbj|BAH56564.1| TIA-1-related RNA binding protein [Spodoptera litura]
Length = 388
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 55/105 (52%), Gaps = 10/105 (9%)
Query: 115 MNGHVIDEHTIRVDKALT------TTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNV 168
MN V+ + ++V+ A + T SN H IF+G++ E E LR AF GEI N
Sbjct: 66 MNKRVVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETHILRDAFAPFGEISNC 125
Query: 169 RLIRDQHTNIGKGFGYVNF--KAEEEELRKAFESCGEIDNVRLIR 211
R++RD T KG+ +V+F KA+ E +A G+ R IR
Sbjct: 126 RIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMN--GQWLGSRSIR 168
Score = 38.1 bits (87), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 21/33 (63%)
Query: 194 LRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 226
LR AF GEI N R++RD T KG+ +V+F
Sbjct: 112 LRDAFAPFGEISNCRIVRDPQTLKSKGYAFVSF 144
>gi|260830993|ref|XP_002610444.1| hypothetical protein BRAFLDRAFT_124262 [Branchiostoma floridae]
gi|229295810|gb|EEN66454.1| hypothetical protein BRAFLDRAFT_124262 [Branchiostoma floridae]
Length = 1022
Score = 56.6 bits (135), Expect = 8e-06, Method: Composition-based stats.
Identities = 36/114 (31%), Positives = 59/114 (51%), Gaps = 8/114 (7%)
Query: 80 PRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALE-MNGHVIDEHTIRVDKALTTT---- 134
P K+C KM H + +V F + AL MNG I ++V+ A T +
Sbjct: 139 PCKSC-KMISEHAG-NDPYCFVEFYDHNHASAALTAMNGRKIMHKEVKVNWATTPSGNKK 196
Query: 135 -KSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 187
SN H +F+G++ E + +L+ AF G+I + R++RD T +G+G+V+F
Sbjct: 197 DTSNHHHVFVGDLSPEIDTTDLKAAFAPFGKISDARVVRDAQTAKSRGYGFVSF 250
>gi|433344|gb|AAC50056.1| p37 AUF1 [Homo sapiens]
Length = 286
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 60/111 (54%), Gaps = 10/111 (9%)
Query: 94 RTNMNAYVRFKNLESVEKALE-----MNGHVIDEHTIRVDKALTTTKSNSHSIFIGNIPF 148
R+ +V FK ESV+K ++ +NG VID + K TK IF+G +
Sbjct: 115 RSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMK----TKEPVKKIFVGGLSP 170
Query: 149 EAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
+ EE++R+ F GE++++ L D TN +GF ++ FK EEE ++K E
Sbjct: 171 DTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFK-EEEPVKKIME 220
Score = 38.5 bits (88), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 36/168 (21%), Positives = 64/168 (38%), Gaps = 55/168 (32%)
Query: 106 LESVEKALEMNGHVIDEHTIRVDKALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEI 165
LE+ + + E G ID + + + +FIG + ++ +++L+ F GE+
Sbjct: 52 LEAPKGSAESEGAKID---------ASKNEEDEGKMFIGGLSWDTTKKDLKDYFSKFGEV 102
Query: 166 DNVRLIRDQHTNIGKGFGYVNFK------------------------------------- 188
+ L D T +GFG+V FK
Sbjct: 103 VDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKK 162
Query: 189 ---------AEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK 227
EE++R+ F GE++++ L D TN +GF ++ FK
Sbjct: 163 IFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFK 210
>gi|412993650|emb|CCO14161.1| predicted protein [Bathycoccus prasinos]
Length = 499
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 79/171 (46%), Gaps = 26/171 (15%)
Query: 29 NIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMN 88
N++ L L ++ + + K A + S + +RF +V A++ + R+A KM
Sbjct: 201 NVYVKGLPLDIDEGILREKFGAFGKIVSC-RVIATTALIRFETVGEAEVAV-REANGKM- 257
Query: 89 KVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKSNSHSIFIGNIPF 148
V E M V F + + +L T SN +++ NIP
Sbjct: 258 IVSEIGGAMPVSVSFNAKQQIMASL-------------------PTHSN---LYVWNIPR 295
Query: 149 EAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
+ EE L+ FE CGE+++V ++RD+ + + KG+G+V F EE KA E
Sbjct: 296 DMEEGSLKHLFEECGEVESVNIMRDKMSQVSKGYGFVKF-IRYEEAEKAIE 345
Score = 43.9 bits (102), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 27/37 (72%)
Query: 190 EEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 226
EE L+ FE CGE+++V ++RD+ + + KG+G+V F
Sbjct: 298 EEGSLKHLFEECGEVESVNIMRDKMSQVSKGYGFVKF 334
Score = 37.0 bits (84), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 133 TTKSNSHS-IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 187
+ K HS +++ +IP + +E +L F+ G +++ ++RD T KG+G+V +
Sbjct: 89 SGKKPKHSNLYVWSIPRDMDERQLSTLFQKFGTVESCTIMRDVQTKQSKGYGFVKY 144
>gi|347839348|emb|CCD53920.1| similar to nuclear and cytoplasmic polyadenylated RNA-binding
protein pub1 [Botryotinia fuckeliana]
Length = 506
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 62/121 (51%), Gaps = 9/121 (7%)
Query: 99 AYVRFKNLESVEKALE-MNGHVIDEHTIRVDKALTTTKSNSHS------IFIGNIPFEAE 151
+V + + + E+A++ +NG + + IRV+ A + SN IF+G++ E
Sbjct: 137 GFVEYDDPGAAERAMQTLNGRRVHQAEIRVNWAYQSNTSNKEDTSNHFHIFVGDLSNEVN 196
Query: 152 EEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESC-GEIDNVRLI 210
+E L +AF + G + R++ D T +G+G+ F+ E ++ KA S GE R I
Sbjct: 197 DEVLLQAFSAFGSVSEARVMWDMKTGRSRGYGFAAFR-ERQDAEKALSSMDGEWLGSRAI 255
Query: 211 R 211
R
Sbjct: 256 R 256
Score = 37.0 bits (84), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 40/81 (49%), Gaps = 6/81 (7%)
Query: 108 SVEKALEMNGHVIDEHTIRVDKALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDN 167
++ + NG V+ + + N ++++G + EE LR+ FE+ G + N
Sbjct: 58 AITSPMGENGGVMSPDSAGGFVRRAAPEPNKRALYVGGLDPRVTEEILRQIFETTGHVQN 117
Query: 168 VRLIRDQHTNIG----KGFGY 184
V++I D+ N+G KGF Y
Sbjct: 118 VKIIPDK--NVGAVQSKGFNY 136
>gi|366987527|ref|XP_003673530.1| hypothetical protein NCAS_0A05890 [Naumovozyma castellii CBS 4309]
gi|342299393|emb|CCC67147.1| hypothetical protein NCAS_0A05890 [Naumovozyma castellii CBS 4309]
Length = 415
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 46/136 (33%), Positives = 66/136 (48%), Gaps = 21/136 (15%)
Query: 94 RTNMNAYVRFKNLESVEKAL-EMNGHVIDEHTIRVDKALTTTKSN--------------- 137
R+ YV F++ EKA+ EM G ID I VD + + +
Sbjct: 201 RSRGYGYVDFEDKSYAEKAIKEMQGKEIDGREINVDMSTSKPAAGNNDRAKKFGDVPSEP 260
Query: 138 SHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKA 197
S ++F+GN+ F A+ + + + F GEI +VR+ T KGFGYV + E+ +KA
Sbjct: 261 SETLFLGNLSFNADRDAISELFSKYGEIISVRIPTHPETEQPKGFGYVQY-TNVEDAKKA 319
Query: 198 FESC-GE-IDN--VRL 209
E GE IDN VRL
Sbjct: 320 LEGLQGEYIDNRPVRL 335
Score = 43.9 bits (102), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 36/55 (65%)
Query: 134 TKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK 188
T+ +IF+G + + ++E L+K FE G + + R+I ++ T+ +G+GYV+F+
Sbjct: 157 TEGEPATIFVGRLSWSIDDEWLKKEFEHIGGVVSARVIMERGTDRSRGYGYVDFE 211
Score = 37.0 bits (84), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 31/45 (68%)
Query: 183 GYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK 227
G +++ ++E L+K FE G + + R+I ++ T+ +G+GYV+F+
Sbjct: 167 GRLSWSIDDEWLKKEFEHIGGVVSARVIMERGTDRSRGYGYVDFE 211
>gi|116256516|ref|NP_001070735.1| heterogeneous nuclear ribonucleoprotein D0 isoform d [Mus musculus]
gi|148688365|gb|EDL20312.1| heterogeneous nuclear ribonucleoprotein D, isoform CRA_b [Mus
musculus]
Length = 287
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 60/111 (54%), Gaps = 10/111 (9%)
Query: 94 RTNMNAYVRFKNLESVEKALE-----MNGHVIDEHTIRVDKALTTTKSNSHSIFIGNIPF 148
R+ +V FK ESV+K ++ +NG VID + K TK IF+G +
Sbjct: 117 RSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMK----TKEPVKKIFVGGLSP 172
Query: 149 EAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
+ EE++R+ F GE++++ L D TN +GF ++ FK EEE ++K E
Sbjct: 173 DTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFK-EEEPVKKIME 222
Score = 37.0 bits (84), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 30/142 (21%), Positives = 55/142 (38%), Gaps = 46/142 (32%)
Query: 132 TTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK--- 188
+ + + +FIG + ++ +++L+ F GE+ + L D T +GFG+V FK
Sbjct: 71 SKNEEDEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESE 130
Query: 189 -------------------------------------------AEEEELRKAFESCGEID 205
EE++R+ F GE++
Sbjct: 131 SVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVE 190
Query: 206 NVRLIRDQHTNIGKGFGYVNFK 227
++ L D TN +GF ++ FK
Sbjct: 191 SIELPMDNKTNKRRGFCFITFK 212
>gi|90085597|dbj|BAE91539.1| unnamed protein product [Macaca fascicularis]
Length = 295
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 36/55 (65%)
Query: 140 SIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEEL 194
S+F+GNIP+EA EE+L+ F G + + RL+ D+ T KG+G+ ++ +E L
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETAL 71
Score = 42.4 bits (98), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 32/55 (58%)
Query: 182 FGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKVSFTTLSSI 236
G + ++A EE+L+ F G + + RL+ D+ T KG+G+ ++ T LS++
Sbjct: 20 VGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAM 74
>gi|281343373|gb|EFB18957.1| hypothetical protein PANDA_015655 [Ailuropoda melanoleuca]
Length = 369
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 60/122 (49%), Gaps = 14/122 (11%)
Query: 91 HEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKA-------------LTTTKSN 137
+ +R+ AYV F ++SV A+ + G + I V + L S
Sbjct: 127 NSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQAEKNRLAAMANNLQKGSSG 186
Query: 138 SHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKA 197
+++G++ F E+ LR FE G+IDN+ L++D T KG+G++ F ++ E R+A
Sbjct: 187 PMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITF-SDSECARRA 245
Query: 198 FE 199
E
Sbjct: 246 LE 247
Score = 43.1 bits (100), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 29/47 (61%)
Query: 183 GYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKVS 229
G ++F E+ LR FE G+IDN+ L++D T KG+G++ F S
Sbjct: 193 GSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDS 239
>gi|395834195|ref|XP_003790097.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D0 isoform 3
[Otolemur garnettii]
Length = 336
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 60/111 (54%), Gaps = 10/111 (9%)
Query: 94 RTNMNAYVRFKNLESVEKALE-----MNGHVIDEHTIRVDKALTTTKSNSHSIFIGNIPF 148
R+ +V FK ESV+K ++ +NG VID + K TK IF+G +
Sbjct: 117 RSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMK----TKEPVKKIFVGGLSP 172
Query: 149 EAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
+ EE++R+ F GE++++ L D TN +GF ++ FK EEE ++K E
Sbjct: 173 DTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFK-EEEPVKKIME 222
Score = 37.7 bits (86), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 30/133 (22%), Positives = 52/133 (39%), Gaps = 46/133 (34%)
Query: 141 IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK------------ 188
+FIG + ++ +++L+ F GE+ + L D T +GFG+V FK
Sbjct: 80 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 139
Query: 189 ----------------------------------AEEEELRKAFESCGEIDNVRLIRDQH 214
EE++R+ F GE++++ L D
Sbjct: 140 EHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNK 199
Query: 215 TNIGKGFGYVNFK 227
TN +GF ++ FK
Sbjct: 200 TNKRRGFCFITFK 212
>gi|403309130|ref|XP_003944981.1| PREDICTED: putative heterogeneous nuclear ribonucleoprotein A1-like
3-like [Saimiri boliviensis boliviensis]
Length = 385
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 57/112 (50%), Gaps = 8/112 (7%)
Query: 84 CIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALT---TTKSNSH- 139
C+ M + KR+ +V + +E V+ A+ H +D + +A++ + + +H
Sbjct: 107 CVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSRGDSRRPGAHL 166
Query: 140 ----SIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 187
IF+G I +AEE LR FE G+I+ + ++ D+ + +GF +V F
Sbjct: 167 TVKKKIFVGGIKEDAEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTF 218
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 31/139 (22%), Positives = 51/139 (36%), Gaps = 53/139 (38%)
Query: 141 IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF------------- 187
+FIG + FE +E LR FE + + ++RD +T +GFG+V +
Sbjct: 80 LFIGGLSFETTDESLRSHFEQWRTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNAR 139
Query: 188 ----------------------------------------KAEEEELRKAFESCGEIDNV 207
AEE LR FE G+I+ +
Sbjct: 140 PHKVDGRVVEPKRAVSRGDSRRPGAHLTVKKKIFVGGIKEDAEEHHLRDYFEQYGKIEVI 199
Query: 208 RLIRDQHTNIGKGFGYVNF 226
++ D+ + +GF +V F
Sbjct: 200 EIMTDRGSGKKRGFAFVTF 218
>gi|194390332|dbj|BAG61935.1| unnamed protein product [Homo sapiens]
Length = 303
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 60/111 (54%), Gaps = 10/111 (9%)
Query: 94 RTNMNAYVRFKNLESVEKALE-----MNGHVIDEHTIRVDKALTTTKSNSHSIFIGNIPF 148
R+ +V FK ESV+K ++ +NG VID + K TK IF+G +
Sbjct: 84 RSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMK----TKEPVKKIFVGGLSP 139
Query: 149 EAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
+ EE++R+ F GE++++ L D TN +GF ++ FK EEE ++K E
Sbjct: 140 DTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFK-EEEPVKKIME 189
Score = 37.7 bits (86), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 32/157 (20%), Positives = 60/157 (38%), Gaps = 48/157 (30%)
Query: 117 GHVIDEHTIRVDKALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHT 176
G + ++D + + + +FIG + ++ +++L+ F GE+ + L D T
Sbjct: 25 GGSAESEGAKID--ASKNEEDEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPIT 82
Query: 177 NIGKGFGYVNFK----------------------------------------------AE 190
+GFG+V FK
Sbjct: 83 GRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTP 142
Query: 191 EEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK 227
EE++R+ F GE++++ L D TN +GF ++ FK
Sbjct: 143 EEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFK 179
>gi|116256518|ref|NP_001070734.1| heterogeneous nuclear ribonucleoprotein D0 isoform b [Mus musculus]
gi|148688364|gb|EDL20311.1| heterogeneous nuclear ribonucleoprotein D, isoform CRA_a [Mus
musculus]
Length = 336
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 60/111 (54%), Gaps = 10/111 (9%)
Query: 94 RTNMNAYVRFKNLESVEKALE-----MNGHVIDEHTIRVDKALTTTKSNSHSIFIGNIPF 148
R+ +V FK ESV+K ++ +NG VID + K TK IF+G +
Sbjct: 117 RSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMK----TKEPVKKIFVGGLSP 172
Query: 149 EAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
+ EE++R+ F GE++++ L D TN +GF ++ FK EEE ++K E
Sbjct: 173 DTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFK-EEEPVKKIME 222
Score = 37.7 bits (86), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 30/133 (22%), Positives = 52/133 (39%), Gaps = 46/133 (34%)
Query: 141 IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK------------ 188
+FIG + ++ +++L+ F GE+ + L D T +GFG+V FK
Sbjct: 80 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 139
Query: 189 ----------------------------------AEEEELRKAFESCGEIDNVRLIRDQH 214
EE++R+ F GE++++ L D
Sbjct: 140 EHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNK 199
Query: 215 TNIGKGFGYVNFK 227
TN +GF ++ FK
Sbjct: 200 TNKRRGFCFITFK 212
>gi|14110417|ref|NP_112737.1| heterogeneous nuclear ribonucleoprotein D0 isoform b [Homo sapiens]
gi|332819428|ref|XP_003310368.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D0 [Pan
troglodytes]
gi|395735088|ref|XP_003776521.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D0 isoform 4
[Pongo abelii]
gi|402869393|ref|XP_003898747.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D0 isoform 3
[Papio anubis]
gi|2815614|gb|AAC23476.1| heterogeneous nuclear ribonucleoprotein D [Homo sapiens]
gi|119626279|gb|EAX05874.1| heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA
binding protein 1, 37kDa), isoform CRA_c [Homo sapiens]
gi|119626283|gb|EAX05878.1| heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA
binding protein 1, 37kDa), isoform CRA_c [Homo sapiens]
gi|119626288|gb|EAX05883.1| heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA
binding protein 1, 37kDa), isoform CRA_c [Homo sapiens]
gi|158258851|dbj|BAF85396.1| unnamed protein product [Homo sapiens]
gi|380783615|gb|AFE63683.1| heterogeneous nuclear ribonucleoprotein D0 isoform b [Macaca
mulatta]
gi|383417961|gb|AFH32194.1| heterogeneous nuclear ribonucleoprotein D0 isoform b [Macaca
mulatta]
gi|384940048|gb|AFI33629.1| heterogeneous nuclear ribonucleoprotein D0 isoform b [Macaca
mulatta]
Length = 336
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 60/111 (54%), Gaps = 10/111 (9%)
Query: 94 RTNMNAYVRFKNLESVEKALE-----MNGHVIDEHTIRVDKALTTTKSNSHSIFIGNIPF 148
R+ +V FK ESV+K ++ +NG VID + K TK IF+G +
Sbjct: 117 RSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMK----TKEPVKKIFVGGLSP 172
Query: 149 EAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
+ EE++R+ F GE++++ L D TN +GF ++ FK EEE ++K E
Sbjct: 173 DTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFK-EEEPVKKIME 222
Score = 37.7 bits (86), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 30/133 (22%), Positives = 52/133 (39%), Gaps = 46/133 (34%)
Query: 141 IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK------------ 188
+FIG + ++ +++L+ F GE+ + L D T +GFG+V FK
Sbjct: 80 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 139
Query: 189 ----------------------------------AEEEELRKAFESCGEIDNVRLIRDQH 214
EE++R+ F GE++++ L D
Sbjct: 140 EHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNK 199
Query: 215 TNIGKGFGYVNFK 227
TN +GF ++ FK
Sbjct: 200 TNKRRGFCFITFK 212
>gi|410351153|gb|JAA42180.1| heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA
binding protein 1, 37kDa) [Pan troglodytes]
Length = 337
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 60/111 (54%), Gaps = 10/111 (9%)
Query: 94 RTNMNAYVRFKNLESVEKALE-----MNGHVIDEHTIRVDKALTTTKSNSHSIFIGNIPF 148
R+ +V FK ESV+K ++ +NG VID + K TK IF+G +
Sbjct: 118 RSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMK----TKEPVKKIFVGGLSP 173
Query: 149 EAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
+ EE++R+ F GE++++ L D TN +GF ++ FK EEE ++K E
Sbjct: 174 DTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFK-EEEPVKKIME 223
Score = 37.7 bits (86), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 30/133 (22%), Positives = 52/133 (39%), Gaps = 46/133 (34%)
Query: 141 IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK------------ 188
+FIG + ++ +++L+ F GE+ + L D T +GFG+V FK
Sbjct: 81 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 140
Query: 189 ----------------------------------AEEEELRKAFESCGEIDNVRLIRDQH 214
EE++R+ F GE++++ L D
Sbjct: 141 EHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNK 200
Query: 215 TNIGKGFGYVNFK 227
TN +GF ++ FK
Sbjct: 201 TNKRRGFCFITFK 213
>gi|119614244|gb|EAW93838.1| heterogeneous nuclear ribonucleoprotein A2/B1, isoform CRA_d [Homo
sapiens]
gi|119614246|gb|EAW93840.1| heterogeneous nuclear ribonucleoprotein A2/B1, isoform CRA_d [Homo
sapiens]
gi|119614247|gb|EAW93841.1| heterogeneous nuclear ribonucleoprotein A2/B1, isoform CRA_d [Homo
sapiens]
Length = 301
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 53/108 (49%), Gaps = 7/108 (6%)
Query: 87 MNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALT---TTKSNSH---- 139
M KR+ +V F ++ V+ A+ H ID + +A+ + K +H
Sbjct: 1 MRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVK 60
Query: 140 SIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 187
+F+G I + EE LR FE G+ID + +I D+ + +GFG+V F
Sbjct: 61 KLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTF 108
>gi|195577213|ref|XP_002078467.1| GD23448 [Drosophila simulans]
gi|194190476|gb|EDX04052.1| GD23448 [Drosophila simulans]
Length = 608
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 66/129 (51%), Gaps = 17/129 (13%)
Query: 85 IKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGH------VIDEHTI----RVDKALTTT 134
I NK KR AY+ F + ESV AL ++G ++ +HT R+ A
Sbjct: 283 ITCNKT--KRFKGIAYIEFDDPESVALALGLSGQRLLGVPIMVQHTQAEKNRLQNATPAF 340
Query: 135 KSNSHS----IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAE 190
+ SH+ +++G++ F E+ LR FE G+ID ++LI D T KG+G++ +
Sbjct: 341 QPKSHTGPMRLYVGSLHFNITEDMLRGIFEPFGKIDAIQLIMDTETGRSKGYGFITYH-N 399
Query: 191 EEELRKAFE 199
++ +KA E
Sbjct: 400 ADDAKKALE 408
>gi|355564713|gb|EHH21213.1| hypothetical protein EGK_04225 [Macaca mulatta]
Length = 960
Score = 56.6 bits (135), Expect = 9e-06, Method: Composition-based stats.
Identities = 34/118 (28%), Positives = 61/118 (51%), Gaps = 17/118 (14%)
Query: 99 AYVRFKNLESVEKAL-EMNGHVIDEHTIRVDKALTTTK--------------SNSHSIFI 143
+V ++ E +KAL ++ GH++D H + V + TK + I +
Sbjct: 777 GFVEYRKPEQAQKALKQLQGHIVDGHKLEVRISERATKPAVTSARKKQVPRTQTTSKILV 836
Query: 144 GNIPFEAEEEELRKAFESCGEIDNVRLIRDQH-TNIGKGFGYVNFKAEEEELRKAFES 200
NIPF+A E+R+ F + GE+ VRL + T +GFG+V+F +++ ++AF +
Sbjct: 837 RNIPFQAHSREIRELFSTFGELKTVRLPKKMTGTGTHRGFGFVDFLTKQDA-KRAFNA 893
Score = 42.7 bits (99), Expect = 0.14, Method: Composition-based stats.
Identities = 46/189 (24%), Positives = 73/189 (38%), Gaps = 36/189 (19%)
Query: 66 TVRFRSVP-------VADITLPRKACIKMNKVHEKRTNMNAY--VRFKNLESVEKALEMN 116
TV+ R P V + P K + + V N Y V F N E V++AL+ N
Sbjct: 295 TVKLRGAPFNVTEKNVTEFLAPLKP-VAIRIVRNAHGNKTGYIFVDFSNEEEVKQALKCN 353
Query: 117 GHVIDEHTIRV--DKALTTTK------------------------SNSHSIFIGNIPFEA 150
+ I V +K + TT + S +F+ N+P+ +
Sbjct: 354 REYMGGRYIEVFREKNVPTTNVAPKNTTKSWQGRMLGENEEEEDLAESGRLFVRNLPYTS 413
Query: 151 EEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLI 210
EE+L K F G + + D T KGF +V F E ++ E G++ R++
Sbjct: 414 TEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYSEVDGQVFQGRML 473
Query: 211 RDQHTNIGK 219
+ I K
Sbjct: 474 HVLPSTIKK 482
>gi|259648117|dbj|BAI40366.1| TIA-1 homologue [Bombyx mori]
Length = 402
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 56/105 (53%), Gaps = 10/105 (9%)
Query: 115 MNGHVIDEHTIRVDKALT------TTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNV 168
MN V+ + ++V+ A + T SN H IF+G++ E E LR+AF GEI N
Sbjct: 66 MNKRVVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNC 125
Query: 169 RLIRDQHTNIGKGFGYVNF--KAEEEELRKAFESCGEIDNVRLIR 211
R++RD T KG+ +V+F KA+ E +A G+ R IR
Sbjct: 126 RIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMN--GQWLGSRSIR 168
>gi|121705054|ref|XP_001270790.1| ribonucleoprotein, chloroplast [Aspergillus clavatus NRRL 1]
gi|119398936|gb|EAW09364.1| ribonucleoprotein, chloroplast [Aspergillus clavatus NRRL 1]
Length = 514
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 50/100 (50%), Gaps = 5/100 (5%)
Query: 114 EMNGHVIDEHTIRVDKALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRD 173
+ G D R + S ++F+GN+PF A E+ +++ F G I +RL D
Sbjct: 344 QQGGGFQDRAQARARSFGDQSSPESDTLFVGNLPFSANEDSVQELFGEKGSIVGIRLPTD 403
Query: 174 QHTNIGKGFGYVNFKAEEEELRKAFES--CGEIDN--VRL 209
+ KGFGYV F A +E R+AF S E+D VRL
Sbjct: 404 PDSGRPKGFGYVQF-ASVDEAREAFNSLNGAELDGRPVRL 442
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 35/50 (70%)
Query: 138 SHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 187
S ++FIGN+ + +E+ LR+ FE+ GE+ VR++ D+ + +GFGYV +
Sbjct: 259 SANLFIGNLSWNVDEDWLRQEFETFGELSGVRIVTDRDSGRSRGFGYVEY 308
Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 30/44 (68%)
Query: 183 GYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 226
G +++ +E+ LR+ FE+ GE+ VR++ D+ + +GFGYV +
Sbjct: 265 GNLSWNVDEDWLRQEFETFGELSGVRIVTDRDSGRSRGFGYVEY 308
>gi|410915344|ref|XP_003971147.1| PREDICTED: RNA-binding protein Musashi homolog 2-like isoform 2
[Takifugu rubripes]
Length = 407
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 59/119 (49%), Gaps = 13/119 (10%)
Query: 82 KACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRV---------DKALT 132
+ C+ M KR+ +V F + SV+K L H +D TI K +T
Sbjct: 48 RECMVMRDPTTKRSRGFGFVTFTDAASVDKVLAQQHHELDSKTIDPKVAFPRRAQPKMVT 107
Query: 133 TTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEE 191
TK IF+G + E++++ FE G++D+ L+ D+ TN +GFG++ F+ E+
Sbjct: 108 RTKK----IFVGGLSANTVVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFITFENED 162
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/148 (21%), Positives = 60/148 (40%), Gaps = 50/148 (33%)
Query: 130 ALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF-- 187
+L ++ + +FIG + ++ + LR F GEI ++RD T +GFG+V F
Sbjct: 12 SLNDSQHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFTD 71
Query: 188 ----------------------------KAEE--------------------EELRKAFE 199
+A+ E++++ FE
Sbjct: 72 AASVDKVLAQQHHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFE 131
Query: 200 SCGEIDNVRLIRDQHTNIGKGFGYVNFK 227
G++D+ L+ D+ TN +GFG++ F+
Sbjct: 132 QFGKVDDAMLMFDKTTNRHRGFGFITFE 159
>gi|402085655|gb|EJT80553.1| polyadenylate-binding protein [Gaeumannomyces graminis var. tritici
R3-111a-1]
Length = 773
Score = 56.6 bits (135), Expect = 9e-06, Method: Composition-based stats.
Identities = 32/115 (27%), Positives = 58/115 (50%), Gaps = 11/115 (9%)
Query: 99 AYVRFKNLESVEKALE-MNGHVIDEHTIRV---------DKALTTTKSNSHSIFIGNIPF 148
+V ++ E+ +A++ +NG +++E + V K+N +I++ NI
Sbjct: 192 GFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKANFTNIYVKNIQL 251
Query: 149 EAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGE 203
+ +++ R FE G + + L RDQ T +GFG+VNF + E+ KA E E
Sbjct: 252 DVTDDDFRALFEKFGHVTSSSLARDQETGKSRGFGFVNFTSHEDA-SKAVEELNE 305
Score = 51.6 bits (122), Expect = 2e-04, Method: Composition-based stats.
Identities = 48/195 (24%), Positives = 77/195 (39%), Gaps = 64/195 (32%)
Query: 93 KRTNMNAYVRFKNLESVEKAL-EMNGHVIDEHTIRV-----DKALTTTKSNSHSIFIGNI 146
+R+ AYV + EKAL E+N +I R+ D AL K+ ++FI N+
Sbjct: 99 RRSLGYAYVNYNTTSDGEKALDELNYTLIKGRPCRIMWSQRDPALR--KTGQGNVFIKNL 156
Query: 147 PFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEE--------------- 191
+ + L F + G I + ++ +D+H N KG+G+V+++ +E
Sbjct: 157 DVAIDNKALHDTFAAFGNILSCKVAQDEHGN-SKGYGFVHYETDEAASQAIKHVNGMLLN 215
Query: 192 -------------------EEL---------------------RKAFESCGEIDNVRLIR 211
EE+ R FE G + + L R
Sbjct: 216 EKKVYVGHHIPKKDRQSKFEEMKANFTNIYVKNIQLDVTDDDFRALFEKFGHVTSSSLAR 275
Query: 212 DQHTNIGKGFGYVNF 226
DQ T +GFG+VNF
Sbjct: 276 DQETGKSRGFGFVNF 290
>gi|320586970|gb|EFW99633.1| nucleic acid-binding protein [Grosmannia clavigera kw1407]
Length = 314
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 68/131 (51%), Gaps = 14/131 (10%)
Query: 99 AYVRFKNLESVEKAL-EMNGH-------VIDEHTIRVD----KALTTTKSNSHSIFIGNI 146
A+V F E++ KAL E +G ++ E T R + A T+T+S + S+++GN+
Sbjct: 162 AFVWFNTAEAMAKALKEADGSFWHGRRIIVQERTARREAGSPSAATSTRSPTTSLYVGNL 221
Query: 147 PFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFES-CGEID 205
P+E + +L + F + +VR+ D+ T +GF + +F+ ++ KAFE G
Sbjct: 222 PYETTDADLNQLFVGLEGVKSVRVAVDRSTGWPRGFAHTDFETVDQAT-KAFEHLAGRTV 280
Query: 206 NVRLIRDQHTN 216
R +R + N
Sbjct: 281 GTRQLRIDYAN 291
Score = 40.4 bits (93), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 138 SHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKA 197
++ I+I N+ F+A E+ L++AFE G + + RD + +GF +V F E +
Sbjct: 118 AYGIYIRNVVFDASEQHLKEAFEHYGPVSKAVIARDAR-GLSRGFAFVWFNTAEAMAKAL 176
Query: 198 FESCGEIDNVRLI 210
E+ G + R I
Sbjct: 177 KEADGSFWHGRRI 189
>gi|340501754|gb|EGR28498.1| ubiquitin-conjugating enzyme family protein, putative
[Ichthyophthirius multifiliis]
Length = 453
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 46/136 (33%), Positives = 74/136 (54%), Gaps = 14/136 (10%)
Query: 86 KMNKVHEK--RTNMNAYVRFKNLESVEKALEMNGHV--------IDEHTIRVDKALTTTK 135
KMN + E R+ A+V FK+ ES KA+E N ++ I++ R ++ +
Sbjct: 192 KMNLLRENDGRSKGLAFVTFKSEESSIKAIE-NSNINFLGRYLAIEKIKPRYERMGSILD 250
Query: 136 SNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELR 195
+IF+GN+ F+ E+LRK F+SCGEI + R+ Q +GFG+V F A+ ++
Sbjct: 251 ETQKTIFVGNLSFKTGSEDLRKFFQSCGEIIDARVA--QQDGKSRGFGHVEF-ADVSGVK 307
Query: 196 KAFESCGEIDNVRLIR 211
KA + GE + R I+
Sbjct: 308 KALKKGGEEIDGRQIK 323
Score = 40.0 bits (92), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 28/44 (63%), Gaps = 2/44 (4%)
Query: 183 GYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 226
G ++FK E+LRK F+SCGEI + R+ Q +GFG+V F
Sbjct: 259 GNLSFKTGSEDLRKFFQSCGEIIDARVA--QQDGKSRGFGHVEF 300
>gi|410915342|ref|XP_003971146.1| PREDICTED: RNA-binding protein Musashi homolog 2-like isoform 1
[Takifugu rubripes]
Length = 388
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 59/119 (49%), Gaps = 13/119 (10%)
Query: 82 KACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRV---------DKALT 132
+ C+ M KR+ +V F + SV+K L H +D TI K +T
Sbjct: 48 RECMVMRDPTTKRSRGFGFVTFTDAASVDKVLAQQHHELDSKTIDPKVAFPRRAQPKMVT 107
Query: 133 TTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEE 191
TK IF+G + E++++ FE G++D+ L+ D+ TN +GFG++ F+ E+
Sbjct: 108 RTKK----IFVGGLSANTVVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFITFENED 162
Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 32/148 (21%), Positives = 60/148 (40%), Gaps = 50/148 (33%)
Query: 130 ALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF-- 187
+L ++ + +FIG + ++ + LR F GEI ++RD T +GFG+V F
Sbjct: 12 SLNDSQHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFTD 71
Query: 188 ----------------------------KAEE--------------------EELRKAFE 199
+A+ E++++ FE
Sbjct: 72 AASVDKVLAQQHHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFE 131
Query: 200 SCGEIDNVRLIRDQHTNIGKGFGYVNFK 227
G++D+ L+ D+ TN +GFG++ F+
Sbjct: 132 QFGKVDDAMLMFDKTTNRHRGFGFITFE 159
>gi|196005405|ref|XP_002112569.1| hypothetical protein TRIADDRAFT_56724 [Trichoplax adhaerens]
gi|190584610|gb|EDV24679.1| hypothetical protein TRIADDRAFT_56724 [Trichoplax adhaerens]
Length = 316
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 37/56 (66%)
Query: 139 HSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEEL 194
S+F+GNIP+EA EE+L+ F S G + + RL+ D+ + KG+G+ F+ +E L
Sbjct: 13 RSVFVGNIPYEATEEQLKDIFGSAGPVVSFRLVYDRESGKPKGYGFCEFQDKETAL 68
Score = 43.5 bits (101), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 33/54 (61%)
Query: 183 GYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKVSFTTLSSI 236
G + ++A EE+L+ F S G + + RL+ D+ + KG+G+ F+ T LS++
Sbjct: 18 GNIPYEATEEQLKDIFGSAGPVVSFRLVYDRESGKPKGYGFCEFQDKETALSAM 71
>gi|119626284|gb|EAX05879.1| heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA
binding protein 1, 37kDa), isoform CRA_f [Homo sapiens]
Length = 277
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 60/111 (54%), Gaps = 10/111 (9%)
Query: 94 RTNMNAYVRFKNLESVEKALE-----MNGHVIDEHTIRVDKALTTTKSNSHSIFIGNIPF 148
R+ +V FK ESV+K ++ +NG VID + K TK IF+G +
Sbjct: 107 RSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMK----TKEPVKKIFVGGLSP 162
Query: 149 EAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
+ EE++R+ F GE++++ L D TN +GF ++ FK EEE ++K E
Sbjct: 163 DTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFK-EEEPVKKIME 212
Score = 38.5 bits (88), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 31/142 (21%), Positives = 54/142 (38%), Gaps = 46/142 (32%)
Query: 132 TTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK--- 188
T + +FIG + ++ +++L+ F GE+ + L D T +GFG+V FK
Sbjct: 61 ATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESE 120
Query: 189 -------------------------------------------AEEEELRKAFESCGEID 205
EE++R+ F GE++
Sbjct: 121 SVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVE 180
Query: 206 NVRLIRDQHTNIGKGFGYVNFK 227
++ L D TN +GF ++ FK
Sbjct: 181 SIELPMDNKTNKRRGFCFITFK 202
>gi|259146662|emb|CAY79919.1| Nsr1p [Saccharomyces cerevisiae EC1118]
Length = 414
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 46/135 (34%), Positives = 67/135 (49%), Gaps = 20/135 (14%)
Query: 94 RTNMNAYVRFKNLESVEKAL-EMNGHVIDEHTIRVDKALTTTKSN--------------S 138
R+ YV F+N EKA+ EM G ID I D + + N S
Sbjct: 207 RSRGYGYVDFENKSYAEKAIQEMQGKEIDGRPINCDMSTSKPAGNNDRAKKFGDTPSEPS 266
Query: 139 HSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAF 198
++F+GN+ F A+ + + + F GE+ +VR+ T KGFGYV F + E+ +KA
Sbjct: 267 DTLFLGNLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQF-SNMEDAKKAL 325
Query: 199 ESC-GE-IDN--VRL 209
++ GE IDN VRL
Sbjct: 326 DALQGEYIDNRPVRL 340
Score = 42.4 bits (98), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 32/48 (66%)
Query: 140 SIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 187
+IF+G + + ++E L+K FE G + R+I ++ T+ +G+GYV+F
Sbjct: 169 TIFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDF 216
>gi|190406825|gb|EDV10092.1| nuclear localization sequence binding protein [Saccharomyces
cerevisiae RM11-1a]
gi|207345058|gb|EDZ72003.1| YGR159Cp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|256272028|gb|EEU07041.1| Nsr1p [Saccharomyces cerevisiae JAY291]
gi|323354844|gb|EGA86677.1| Nsr1p [Saccharomyces cerevisiae VL3]
gi|365765431|gb|EHN06939.1| Nsr1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 416
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 46/135 (34%), Positives = 67/135 (49%), Gaps = 20/135 (14%)
Query: 94 RTNMNAYVRFKNLESVEKAL-EMNGHVIDEHTIRVDKALTTTKSN--------------S 138
R+ YV F+N EKA+ EM G ID I D + + N S
Sbjct: 209 RSRGYGYVDFENKSYAEKAIQEMQGKEIDGRPINCDMSTSKPAGNNDRAKKFGDTPSEPS 268
Query: 139 HSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAF 198
++F+GN+ F A+ + + + F GE+ +VR+ T KGFGYV F + E+ +KA
Sbjct: 269 DTLFLGNLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQF-SNMEDAKKAL 327
Query: 199 ESC-GE-IDN--VRL 209
++ GE IDN VRL
Sbjct: 328 DALQGEYIDNRPVRL 342
Score = 42.4 bits (98), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 32/48 (66%)
Query: 140 SIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 187
+IF+G + + ++E L+K FE G + R+I ++ T+ +G+GYV+F
Sbjct: 171 TIFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDF 218
>gi|151943436|gb|EDN61747.1| nuclear localization sequence binding protein [Saccharomyces
cerevisiae YJM789]
Length = 418
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 46/135 (34%), Positives = 67/135 (49%), Gaps = 20/135 (14%)
Query: 94 RTNMNAYVRFKNLESVEKAL-EMNGHVIDEHTIRVDKALTTTKSN--------------S 138
R+ YV F+N EKA+ EM G ID I D + + N S
Sbjct: 211 RSRGYGYVDFENKSYAEKAIQEMQGKEIDGRPINCDMSTSKPAGNNDRAKKFGDTPSEPS 270
Query: 139 HSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAF 198
++F+GN+ F A+ + + + F GE+ +VR+ T KGFGYV F + E+ +KA
Sbjct: 271 DTLFLGNLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQF-SNMEDAKKAL 329
Query: 199 ESC-GE-IDN--VRL 209
++ GE IDN VRL
Sbjct: 330 DALQGEYIDNRPVRL 344
Score = 42.4 bits (98), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 32/48 (66%)
Query: 140 SIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 187
+IF+G + + ++E L+K FE G + R+I ++ T+ +G+GYV+F
Sbjct: 173 TIFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDF 220
>gi|392332853|ref|XP_003752716.1| PREDICTED: regulator of G-protein signaling protein-like [Rattus
norvegicus]
Length = 1173
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 55/111 (49%), Gaps = 7/111 (6%)
Query: 84 CIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALT---TTKSNSH- 139
C+ M KR+ +V + +E V+ A+ H +D + +A++ + K +H
Sbjct: 758 CVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHL 817
Query: 140 ---SIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 187
IF+G I + EE LR FE G+I+ + ++ D+ + +GF +V F
Sbjct: 818 TVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTF 868
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/169 (21%), Positives = 58/169 (34%), Gaps = 64/169 (37%)
Query: 110 EKALEMNGHVIDEHTIRVDKALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVR 169
E L+M GH E +FIG + FE ++ LR+ FE G + +
Sbjct: 712 ESGLKMEGHDPKE------------PEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCV 759
Query: 170 LIRDQHTNIGKGFGYVNFKA---------------------------------------- 189
++RD T +GFG+V +
Sbjct: 760 VMRDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTV 819
Query: 190 ------------EEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 226
EE LR FE G+I+ + ++ D+ + +GF +V F
Sbjct: 820 KKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTF 868
>gi|345322713|ref|XP_001506312.2| PREDICTED: RNA-binding protein Musashi homolog 2-like
[Ornithorhynchus anatinus]
Length = 251
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 58/115 (50%), Gaps = 5/115 (4%)
Query: 82 KACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVD-----KALTTTKS 136
+ C+ M KR+ +V F + SV+K L H +D TI +A +
Sbjct: 44 RECMVMRDPTTKRSRGFGFVTFADPASVDKVLAQPHHELDSKTIDPKVAFPRRAQPKMVT 103
Query: 137 NSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEE 191
+ IF+G + E++++ FE G++++ L+ D+ TN +GFG+V F+ E+
Sbjct: 104 RTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENED 158
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/142 (23%), Positives = 58/142 (40%), Gaps = 50/142 (35%)
Query: 136 SNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF-------- 187
S+S +FIG + ++ + LR F GEI ++RD T +GFG+V F
Sbjct: 14 SSSSKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDK 73
Query: 188 ----------------------KAEE--------------------EELRKAFESCGEID 205
+A+ E++++ FE G+++
Sbjct: 74 VLAQPHHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVE 133
Query: 206 NVRLIRDQHTNIGKGFGYVNFK 227
+ L+ D+ TN +GFG+V F+
Sbjct: 134 DAMLMFDKTTNRHRGFGFVTFE 155
>gi|326507886|dbj|BAJ86686.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 751
Score = 56.6 bits (135), Expect = 9e-06, Method: Composition-based stats.
Identities = 35/108 (32%), Positives = 51/108 (47%), Gaps = 7/108 (6%)
Query: 99 AYVRFKNLESVEKALEMNGHVI-------DEHTIRVDKALTTTKSNSHSIFIGNIPFEAE 151
A + KN E +A E +G DE + D A + IF+G + EA
Sbjct: 197 AAAKSKNEEHRARAAEKHGQAAGEVKENEDERKVMSDMAKNRQRKKELEIFVGGLDREAV 256
Query: 152 EEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
EE++RK F G++ VRL +D T+ KGF +V F +E+ R E
Sbjct: 257 EEDIRKVFSQVGDVVEVRLHKDFSTSKNKGFAFVRFANKEQVARALAE 304
Score = 40.8 bits (94), Expect = 0.48, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 31/55 (56%)
Query: 140 SIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEEL 194
S+FI +P +EE ++ F++ G I+ V L R+ + FG+VNF EE L
Sbjct: 423 SVFINGLPPYWDEERVKNRFKAYGLIERVVLARNMSSAKRNDFGFVNFSTHEEAL 477
Score = 38.9 bits (89), Expect = 2.0, Method: Composition-based stats.
Identities = 18/44 (40%), Positives = 28/44 (63%)
Query: 183 GYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 226
G ++ +A EE++RK F G++ VRL +D T+ KGF +V F
Sbjct: 249 GGLDREAVEEDIRKVFSQVGDVVEVRLHKDFSTSKNKGFAFVRF 292
>gi|392869588|gb|EJB11873.1| nuclear and cytoplasmic polyadenylated RNA-binding protein pub1
[Coccidioides immitis RS]
Length = 466
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 62/121 (51%), Gaps = 9/121 (7%)
Query: 99 AYVRFKNLESVEKALE-MNGHVIDEHTIRVDKALTTTKSNSHS------IFIGNIPFEAE 151
+V + + + E+A++ +NG + + IRV+ A + +N IF+G++ E
Sbjct: 137 GFVEYDDPGAAERAMQTLNGRRVHQSEIRVNWAYQSNNANKEDTSNHFHIFVGDLSNEVN 196
Query: 152 EEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESC-GEIDNVRLI 210
+E L +AF + G + R++ D T +G+G+V F+ E + KA S GE R I
Sbjct: 197 DEVLLQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFR-ERADAEKALSSMDGEWLGSRAI 255
Query: 211 R 211
R
Sbjct: 256 R 256
>gi|349604934|gb|AEQ00343.1| Heteroproteinous nuclear ribonucleoprotein D-like-like protein,
partial [Equus caballus]
Length = 297
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 59/108 (54%), Gaps = 2/108 (1%)
Query: 94 RTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALT-TTKSNSHSIFIGNIPFEAEE 152
R+ +V FK+ SV+K LE+ H +D I +A K +F+G + + E
Sbjct: 64 RSRGFGFVLFKDAASVDKVLELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDTSE 123
Query: 153 EELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFES 200
E++++ F + GEI+N+ L D TN +GF ++ + +EE ++K ES
Sbjct: 124 EQIKEYFGAFGEIENIELPMDTKTNERRGFCFITY-TDEEPVKKLLES 170
>gi|29124621|gb|AAH48898.1| Heterogeneous nuclear ribonucleoprotein A/B [Danio rerio]
Length = 340
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 59/115 (51%), Gaps = 2/115 (1%)
Query: 85 IKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKSNSHSIFIG 144
IKM+ + R+ ++ FK V+K L H +D I KA+ K IF+G
Sbjct: 100 IKMD-PNTGRSRGFGFILFKEPSGVDKVLAQKEHRLDGRQIDPKKAMAMKKEPVKKIFVG 158
Query: 145 NIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
+ E EE +R+ F + GEI+ + L D +N +GF ++ FK EEE ++K E
Sbjct: 159 GLNPETTEERIREYFGAFGEIETIELPMDPKSNKRRGFVFITFK-EEEAVKKILE 212
Score = 38.1 bits (87), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 35/188 (18%), Positives = 71/188 (37%), Gaps = 52/188 (27%)
Query: 91 HEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKA------LTTTKSNSHSIFIG 144
HE ++N ++ +A G+ + T D A + + ++ +F+G
Sbjct: 16 HEGEDDLNGAGQYDQGNGDAQAG-AQGNAGADGTAGDDGADGGQIDASKGEEDAGKMFVG 74
Query: 145 NIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK---------------- 188
+ ++ +++L+ F GE+ + + D +T +GFG++ FK
Sbjct: 75 GLSWDTSKKDLKDCFSKFGEVTDCTIKMDPNTGRSRGFGFILFKEPSGVDKVLAQKEHRL 134
Query: 189 -----------------------------AEEEELRKAFESCGEIDNVRLIRDQHTNIGK 219
EE +R+ F + GEI+ + L D +N +
Sbjct: 135 DGRQIDPKKAMAMKKEPVKKIFVGGLNPETTEERIREYFGAFGEIETIELPMDPKSNKRR 194
Query: 220 GFGYVNFK 227
GF ++ FK
Sbjct: 195 GFVFITFK 202
>gi|403263354|ref|XP_003924002.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D0 isoform 3
[Saimiri boliviensis boliviensis]
Length = 336
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 60/111 (54%), Gaps = 10/111 (9%)
Query: 94 RTNMNAYVRFKNLESVEKALE-----MNGHVIDEHTIRVDKALTTTKSNSHSIFIGNIPF 148
R+ +V FK ESV+K ++ +NG VID + K TK IF+G +
Sbjct: 117 RSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMK----TKEPVKKIFVGGLSP 172
Query: 149 EAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
+ EE++R+ F GE++++ L D TN +GF ++ FK EEE ++K E
Sbjct: 173 DTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFK-EEEPVKKIME 222
Score = 37.7 bits (86), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 30/133 (22%), Positives = 52/133 (39%), Gaps = 46/133 (34%)
Query: 141 IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK------------ 188
+FIG + ++ +++L+ F GE+ + L D T +GFG+V FK
Sbjct: 80 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 139
Query: 189 ----------------------------------AEEEELRKAFESCGEIDNVRLIRDQH 214
EE++R+ F GE++++ L D
Sbjct: 140 EHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNK 199
Query: 215 TNIGKGFGYVNFK 227
TN +GF ++ FK
Sbjct: 200 TNKRRGFCFITFK 212
>gi|221220742|gb|ACM09032.1| Heterogeneous nuclear ribonucleoprotein A/B [Salmo salar]
Length = 336
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 61/115 (53%), Gaps = 2/115 (1%)
Query: 85 IKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKSNSHSIFIG 144
IKM+ + R+ ++ FK SV+K LE H +D I KA+ K + IF+G
Sbjct: 113 IKMDS-NTGRSRGFGFILFKEAGSVDKVLEQKEHRLDGRQIDPKKAMAMKKEPAKKIFVG 171
Query: 145 NIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
+ EA EE +R+ F + GEI+++ L D +GF ++ FK EE ++K E
Sbjct: 172 GLNPEATEETIREYFGTFGEIESIELPVDLKFKKRRGFIFITFK-EEATVKKCLE 225
>gi|160333913|ref|NP_001103930.1| heterogeneous nuclear ribonucleoprotein D0 [Danio rerio]
gi|141796298|gb|AAI39675.1| Hnrnpd protein [Danio rerio]
Length = 314
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 62/111 (55%), Gaps = 10/111 (9%)
Query: 94 RTNMNAYVRFKNLESVEKAL-----EMNGHVIDEHTIRVDKALTTTKSNSHSIFIGNIPF 148
R+ +V FK ESVEK + ++NG VID + K TK IF+G +
Sbjct: 93 RSRGFGFVLFKEAESVEKVITQKEHKLNGKVIDPKKAKAMK----TKEPVKKIFVGGLSP 148
Query: 149 EAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
+ EE++R+ F++ GE++++ L + TN +GF ++ FK EEE ++K E
Sbjct: 149 DTPEEKIREYFDAYGEVESIELPMENKTNKRRGFCFITFK-EEEPVKKIME 198
>gi|74001707|ref|XP_535627.2| PREDICTED: heterogeneous nuclear ribonucleoprotein D0 isoform 1
[Canis lupus familiaris]
Length = 336
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 60/111 (54%), Gaps = 10/111 (9%)
Query: 94 RTNMNAYVRFKNLESVEKALE-----MNGHVIDEHTIRVDKALTTTKSNSHSIFIGNIPF 148
R+ +V FK ESV+K ++ +NG VID + K TK IF+G +
Sbjct: 117 RSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMK----TKEPVKKIFVGGLSP 172
Query: 149 EAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
+ EE++R+ F GE++++ L D TN +GF ++ FK EEE ++K E
Sbjct: 173 DTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFK-EEEPVKKIME 222
Score = 37.7 bits (86), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 30/133 (22%), Positives = 52/133 (39%), Gaps = 46/133 (34%)
Query: 141 IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK------------ 188
+FIG + ++ +++L+ F GE+ + L D T +GFG+V FK
Sbjct: 80 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 139
Query: 189 ----------------------------------AEEEELRKAFESCGEIDNVRLIRDQH 214
EE++R+ F GE++++ L D
Sbjct: 140 EHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNK 199
Query: 215 TNIGKGFGYVNFK 227
TN +GF ++ FK
Sbjct: 200 TNKRRGFCFITFK 212
>gi|9588102|dbj|BAB03468.1| RNA binding protein p37 AUF1 [Rattus norvegicus]
Length = 285
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 60/111 (54%), Gaps = 10/111 (9%)
Query: 94 RTNMNAYVRFKNLESVEKALE-----MNGHVIDEHTIRVDKALTTTKSNSHSIFIGNIPF 148
R+ +V FK ESV+K ++ +NG VID + K TK IF+G +
Sbjct: 115 RSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMK----TKEPVKKIFVGGLSP 170
Query: 149 EAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
+ EE++R+ F GE++++ L D TN +GF ++ FK EEE ++K E
Sbjct: 171 DTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFK-EEEPVKKIME 220
>gi|351694750|gb|EHA97668.1| Putative RNA-binding protein 19 [Heterocephalus glaber]
Length = 955
Score = 56.6 bits (135), Expect = 1e-05, Method: Composition-based stats.
Identities = 36/118 (30%), Positives = 64/118 (54%), Gaps = 17/118 (14%)
Query: 99 AYVRFKNLESVEKAL-EMNGHVIDEHTIRVD-------KALTTT-------KSNSHSIFI 143
+V ++ E +KAL ++ GHV+D H + + ALT++ K + I +
Sbjct: 772 GFVEYRKPEHAQKALRQLQGHVVDGHKLELRISERATRPALTSSRKKQVPRKQTTSKILV 831
Query: 144 GNIPFEAEEEELRKAFESCGEIDNVRLIRDQH-TNIGKGFGYVNFKAEEEELRKAFES 200
NIPF+A E+R+ F + GE+ VRL + T +GFG+V+F +++ ++AF +
Sbjct: 832 RNIPFQASLREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFLTKQDA-KRAFNA 888
Score = 39.3 bits (90), Expect = 1.4, Method: Composition-based stats.
Identities = 42/180 (23%), Positives = 70/180 (38%), Gaps = 36/180 (20%)
Query: 66 TVRFRSVP-------VADITLPRKACIKMNKVHEKRTNMNAY--VRFKNLESVEKALEMN 116
TV+ R P V + P K + + V N Y V F + E V+KAL+ N
Sbjct: 290 TVKLRGAPFNVTEKNVTEFLAPLKP-VAIRIVRNAHGNKTGYIFVDFSSEEEVKKALKCN 348
Query: 117 GHVIDEHTIRV--DKALTTTK------------------------SNSHSIFIGNIPFEA 150
+ I V +K + K ++S +F+ N+P+ +
Sbjct: 349 REYMGGRYIEVFREKQVPMAKEPLKSSTKAWQGRMLGENEEEEDLADSGRLFVRNLPYTS 408
Query: 151 EEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLI 210
EE+L K F + G + + D T KGF +V F E ++ G++ R++
Sbjct: 409 TEEDLEKLFSTYGPLSELHFPIDSLTKKPKGFAFVTFLFPEHAVKAYSAVDGQVFQGRML 468
>gi|19114443|ref|NP_593531.1| nucleolar protein required for rRNA processing [Schizosaccharomyces
pombe 972h-]
gi|6226864|sp|P41891.2|GAR2_SCHPO RecName: Full=Protein gar2
gi|7523472|emb|CAB86413.1| nucleolar protein required for rRNA processing [Schizosaccharomyces
pombe]
Length = 500
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 33/50 (66%)
Query: 138 SHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 187
S ++F+GN+ F A E++L AF CG+I ++RL D + KGFGYV F
Sbjct: 365 SDTVFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTF 414
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 28/44 (63%)
Query: 183 GYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 226
G ++F A E++L AF CG+I ++RL D + KGFGYV F
Sbjct: 371 GNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTF 414
Score = 42.0 bits (97), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 31/52 (59%)
Query: 140 SIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEE 191
++F+G + + +++ L + FE G I R+I D + KG+GYV+F+ E
Sbjct: 264 TVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPE 315
>gi|392553610|ref|ZP_10300747.1| hypothetical protein PspoU_20260 [Pseudoalteromonas spongiae
UST010723-006]
Length = 155
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 38/54 (70%)
Query: 132 TTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYV 185
T K S S+++GN+P++A E +R FE G+I +VRL++D+HT +GFG+V
Sbjct: 57 TEKKEASKSLYVGNLPYKANEAVVRSLFEQHGKIFSVRLLKDKHTGKRRGFGFV 110
Score = 42.0 bits (97), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 29/42 (69%)
Query: 183 GYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYV 224
G + +KA E +R FE G+I +VRL++D+HT +GFG+V
Sbjct: 69 GNLPYKANEAVVRSLFEQHGKIFSVRLLKDKHTGKRRGFGFV 110
>gi|380818506|gb|AFE81126.1| putative RNA-binding protein 19 [Macaca mulatta]
gi|383412169|gb|AFH29298.1| putative RNA-binding protein 19 [Macaca mulatta]
Length = 960
Score = 56.2 bits (134), Expect = 1e-05, Method: Composition-based stats.
Identities = 34/118 (28%), Positives = 61/118 (51%), Gaps = 17/118 (14%)
Query: 99 AYVRFKNLESVEKAL-EMNGHVIDEHTIRVDKALTTTK--------------SNSHSIFI 143
+V ++ E +KAL ++ GH++D H + V + TK + I +
Sbjct: 777 GFVEYRKPEQAQKALKQLQGHIVDGHKLEVRISERATKPAVTSARKKQVPRTQTTSKILV 836
Query: 144 GNIPFEAEEEELRKAFESCGEIDNVRLIRDQH-TNIGKGFGYVNFKAEEEELRKAFES 200
NIPF+A E+R+ F + GE+ VRL + T +GFG+V+F +++ ++AF +
Sbjct: 837 RNIPFQAHSREIRELFSTFGELKTVRLPKKMTGTGTHRGFGFVDFLTKQDA-KRAFNA 893
Score = 42.4 bits (98), Expect = 0.16, Method: Composition-based stats.
Identities = 46/189 (24%), Positives = 73/189 (38%), Gaps = 36/189 (19%)
Query: 66 TVRFRSVP-------VADITLPRKACIKMNKVHEKRTNMNAY--VRFKNLESVEKALEMN 116
TV+ R P V + P K + + V N Y V F N E V++AL+ N
Sbjct: 295 TVKLRGAPFNVTEKNVTEFLAPLKP-VAIRIVRNAHGNKTGYIFVDFSNEEEVKQALKCN 353
Query: 117 GHVIDEHTIRV--DKALTTTK------------------------SNSHSIFIGNIPFEA 150
+ I V +K + TT + S +F+ N+P+ +
Sbjct: 354 REYMGGRYIEVFREKNVPTTNVAPKNTTKSWQGRMLGENEEEEDLAESGRLFVRNLPYTS 413
Query: 151 EEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLI 210
EE+L K F G + + D T KGF +V F E ++ E G++ R++
Sbjct: 414 TEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYSEVDGQVFQGRML 473
Query: 211 RDQHTNIGK 219
+ I K
Sbjct: 474 HVLPSTIKK 482
>gi|355786561|gb|EHH66744.1| hypothetical protein EGM_03792 [Macaca fascicularis]
Length = 960
Score = 56.2 bits (134), Expect = 1e-05, Method: Composition-based stats.
Identities = 34/118 (28%), Positives = 61/118 (51%), Gaps = 17/118 (14%)
Query: 99 AYVRFKNLESVEKAL-EMNGHVIDEHTIRVDKALTTTK--------------SNSHSIFI 143
+V ++ E +KAL ++ GH++D H + V + TK + I +
Sbjct: 777 GFVEYRKPEQAQKALKQLQGHIVDGHKLEVRISERATKPAVTSARKKQVPRTQTTSKILV 836
Query: 144 GNIPFEAEEEELRKAFESCGEIDNVRLIRDQH-TNIGKGFGYVNFKAEEEELRKAFES 200
NIPF+A E+R+ F + GE+ VRL + T +GFG+V+F +++ ++AF +
Sbjct: 837 RNIPFQAHSREIRELFSTFGELKTVRLPKKMTGTGTHRGFGFVDFLTKQDA-KRAFNA 893
Score = 42.4 bits (98), Expect = 0.16, Method: Composition-based stats.
Identities = 46/189 (24%), Positives = 73/189 (38%), Gaps = 36/189 (19%)
Query: 66 TVRFRSVP-------VADITLPRKACIKMNKVHEKRTNMNAY--VRFKNLESVEKALEMN 116
TV+ R P V + P K + + V N Y V F N E V++AL+ N
Sbjct: 295 TVKLRGAPFNVTEKNVTEFLAPLKP-VAIRIVRNAHGNKTGYIFVDFSNEEEVKQALKCN 353
Query: 117 GHVIDEHTIRV--DKALTTTK------------------------SNSHSIFIGNIPFEA 150
+ I V +K + TT + S +F+ N+P+ +
Sbjct: 354 REYMGGRYIEVFREKNVPTTNVAPKNTTKSWQGRMLGENEEEEDLAESGRLFVRNLPYTS 413
Query: 151 EEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLI 210
EE+L K F G + + D T KGF +V F E ++ E G++ R++
Sbjct: 414 TEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYSEVDGQVFQGRML 473
Query: 211 RDQHTNIGK 219
+ I K
Sbjct: 474 HVLPSTIKK 482
>gi|663262|emb|CAA88179.1| gar2 [Schizosaccharomyces pombe]
Length = 500
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 33/50 (66%)
Query: 138 SHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 187
S ++F+GN+ F A E++L AF CG+I ++RL D + KGFGYV F
Sbjct: 365 SDTVFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTF 414
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 28/44 (63%)
Query: 183 GYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 226
G ++F A E++L AF CG+I ++RL D + KGFGYV F
Sbjct: 371 GNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTF 414
Score = 42.0 bits (97), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 31/52 (59%)
Query: 140 SIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEE 191
++F+G + + +++ L + FE G I R+I D + KG+GYV+F+ E
Sbjct: 264 TVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPE 315
>gi|9588098|dbj|BAB03466.1| RNA binding protein p42 AUF1 [Rattus norvegicus]
Length = 334
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 60/111 (54%), Gaps = 10/111 (9%)
Query: 94 RTNMNAYVRFKNLESVEKALE-----MNGHVIDEHTIRVDKALTTTKSNSHSIFIGNIPF 148
R+ +V FK ESV+K ++ +NG VID + K TK IF+G +
Sbjct: 115 RSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMK----TKEPVKKIFVGGLSP 170
Query: 149 EAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
+ EE++R+ F GE++++ L D TN +GF ++ FK EEE ++K E
Sbjct: 171 DTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFK-EEEPVKKIME 220
>gi|259013338|ref|NP_001158364.1| musashi homolog 2 [Saccoglossus kowalevskii]
gi|32307763|gb|AAP79278.1| musashi nrp-1 [Saccoglossus kowalevskii]
Length = 394
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 57/116 (49%), Gaps = 12/116 (10%)
Query: 84 CIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTI--------RVDKALTTTK 135
C+ M KR+ ++ F++ SVEK L H +D+ I R +T TK
Sbjct: 50 CMVMRDQATKRSRGFGFITFRDPASVEKVLAQAAHELDQKKIDPKVAFPKRSHPKVTRTK 109
Query: 136 SNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEE 191
IF+G + ++++ F G+++ +L+ D+ TN +GFG+V F +E+
Sbjct: 110 K----IFVGGLSANTTADDIKNHFSQYGKVEEAQLMFDKQTNRHRGFGFVTFDSED 161
Score = 43.9 bits (102), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 29/135 (21%), Positives = 54/135 (40%), Gaps = 49/135 (36%)
Query: 141 IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK------------ 188
+FIG + ++ + LR+ F GE+ ++RDQ T +GFG++ F+
Sbjct: 23 MFIGGLSWQTTPDGLREYFSKFGEVTECMVMRDQATKRSRGFGFITFRDPASVEKVLAQA 82
Query: 189 AEE-------------------------------------EELRKAFESCGEIDNVRLIR 211
A E ++++ F G+++ +L+
Sbjct: 83 AHELDQKKIDPKVAFPKRSHPKVTRTKKIFVGGLSANTTADDIKNHFSQYGKVEEAQLMF 142
Query: 212 DQHTNIGKGFGYVNF 226
D+ TN +GFG+V F
Sbjct: 143 DKQTNRHRGFGFVTF 157
>gi|449266230|gb|EMC77309.1| Heterogeneous nuclear ribonucleoprotein A3 like protein 2, partial
[Columba livia]
Length = 356
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 56/111 (50%), Gaps = 7/111 (6%)
Query: 84 CIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALT---TTKSNSH- 139
C+ M KR+ +V + +E V+ A+ H +D + +A++ + K +H
Sbjct: 40 CVVMRDPQTKRSRGFGFVTYSCVEEVDAAMSARPHKVDGRVVEPKRAVSREDSVKPGAHL 99
Query: 140 ---SIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 187
IF+G I + EE LR+ FE G+I+ + ++ D+ + +GF +V F
Sbjct: 100 TVKKIFVGGIKEDTEEYNLREYFEKYGKIETIEVMEDRQSGKKRGFAFVTF 150
Score = 45.1 bits (105), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 30/138 (21%), Positives = 52/138 (37%), Gaps = 52/138 (37%)
Query: 141 IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKA----------- 189
+FIG + FE ++ LR+ FE G + + ++RD T +GFG+V +
Sbjct: 13 LFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMSAR 72
Query: 190 -----------------------------------------EEEELRKAFESCGEIDNVR 208
EE LR+ FE G+I+ +
Sbjct: 73 PHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLREYFEKYGKIETIE 132
Query: 209 LIRDQHTNIGKGFGYVNF 226
++ D+ + +GF +V F
Sbjct: 133 VMEDRQSGKKRGFAFVTF 150
>gi|346327401|gb|EGX96997.1| RNA splicing factor (Pad-1), putative [Cordyceps militaris CM01]
Length = 545
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 65/127 (51%), Gaps = 17/127 (13%)
Query: 94 RTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVD--------KALTTTKSNSHS----- 140
R+ YV FKN +SV AL++ G + + V +A TT SH
Sbjct: 198 RSKGVGYVEFKNEDSVAPALQLTGQKLLGIPVIVQVTEAEKNRQARTTEPGGSHPNHVPF 257
Query: 141 --IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAF 198
+++GNI F E++L+ F+ GE++ V+L +D+ TN +G+G+V F+ + + R+A
Sbjct: 258 HRLYVGNIHFNVTEQDLQAVFDPFGELEFVQLQKDE-TNRSRGYGFVQFR-DAGQAREAL 315
Query: 199 ESCGEID 205
E D
Sbjct: 316 EKMNGFD 322
>gi|258570067|ref|XP_002543837.1| OsGRP2 protein [Uncinocarpus reesii 1704]
gi|237904107|gb|EEP78508.1| OsGRP2 protein [Uncinocarpus reesii 1704]
Length = 370
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 62/121 (51%), Gaps = 9/121 (7%)
Query: 99 AYVRFKNLESVEKALE-MNGHVIDEHTIRVDKALTTTK------SNSHSIFIGNIPFEAE 151
+V + + + E+A++ +NG + + IRV+ A + SN IF+G++ E
Sbjct: 42 GFVEYDDPGAAERAMQTLNGRRVHQSEIRVNWAYQSNNNNKEDTSNHFHIFVGDLSNEVN 101
Query: 152 EEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESC-GEIDNVRLI 210
+E L +AF + G + R++ D T +G+G+V F+ E + KA S GE R I
Sbjct: 102 DEVLLQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFR-ERADAEKALSSMDGEWLGSRAI 160
Query: 211 R 211
R
Sbjct: 161 R 161
>gi|242064522|ref|XP_002453550.1| hypothetical protein SORBIDRAFT_04g007860 [Sorghum bicolor]
gi|241933381|gb|EES06526.1| hypothetical protein SORBIDRAFT_04g007860 [Sorghum bicolor]
Length = 391
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 59/114 (51%), Gaps = 7/114 (6%)
Query: 84 CIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALT----TTKSN-- 137
+ M H K +V F + ++K LE + HVID T+ V + + TTK
Sbjct: 85 SVIMKDKHTKMPRGFGFVTFSDPSVIDKVLEDD-HVIDGRTVEVKRTVPREEMTTKDGPK 143
Query: 138 SHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEE 191
+ IFIG +P E+EL+ F S G++ +++ D T +GFG+V F++E+
Sbjct: 144 TRKIFIGGLPPSLTEDELKDHFSSYGKVVEHQIMLDHSTGRSRGFGFVTFESED 197
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/141 (23%), Positives = 55/141 (39%), Gaps = 50/141 (35%)
Query: 137 NSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAE------ 190
+S IF+G + +E EE K FE G I + +++D+HT + +GFG+V F
Sbjct: 54 SSGKIFVGGVAWETTEESFSKHFEKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKV 113
Query: 191 --------------------------------------------EEELRKAFESCGEIDN 206
E+EL+ F S G++
Sbjct: 114 LEDDHVIDGRTVEVKRTVPREEMTTKDGPKTRKIFIGGLPPSLTEDELKDHFSSYGKVVE 173
Query: 207 VRLIRDQHTNIGKGFGYVNFK 227
+++ D T +GFG+V F+
Sbjct: 174 HQIMLDHSTGRSRGFGFVTFE 194
>gi|127138754|ref|NP_001076010.1| heterogeneous nuclear ribonucleoprotein D0 isoform d [Rattus
norvegicus]
gi|149046820|gb|EDL99594.1| heterogeneous nuclear ribonucleoprotein D, isoform CRA_d [Rattus
norvegicus]
Length = 285
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 60/111 (54%), Gaps = 10/111 (9%)
Query: 94 RTNMNAYVRFKNLESVEKALE-----MNGHVIDEHTIRVDKALTTTKSNSHSIFIGNIPF 148
R+ +V FK ESV+K ++ +NG VID + K TK IF+G +
Sbjct: 115 RSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMK----TKEPVKKIFVGGLSP 170
Query: 149 EAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
+ EE++R+ F GE++++ L D TN +GF ++ FK EEE ++K E
Sbjct: 171 DTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFK-EEEPVKKIME 220
>gi|118918389|ref|NP_001036895.2| TIA1 cytotoxic granule-associated RNA binding protein [Bombyx mori]
gi|111608113|gb|ABH10800.1| nucleolysin TIAR protein [Bombyx mori]
Length = 402
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 56/105 (53%), Gaps = 10/105 (9%)
Query: 115 MNGHVIDEHTIRVDKALT------TTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNV 168
MN V+ + ++V+ A + T SN H IF+G++ E E LR+AF GEI N
Sbjct: 66 MNKRVVLDKEMKVNWATSPGNQPKTDTSNHHHIFVGDLSPEIETNILREAFAPFGEISNC 125
Query: 169 RLIRDQHTNIGKGFGYVNF--KAEEEELRKAFESCGEIDNVRLIR 211
R++RD T KG+ +V+F KA+ E +A G+ R IR
Sbjct: 126 RIVRDPQTLKSKGYAFVSFVKKADAEAAIQAMN--GQWLGSRSIR 168
>gi|149615308|ref|XP_001519571.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A0-like, partial
[Ornithorhynchus anatinus]
Length = 270
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/121 (21%), Positives = 64/121 (52%), Gaps = 7/121 (5%)
Query: 84 CIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALT---TTKSNSHS 140
C+ + KR+ +V + N+E + A+ + H +D +T+ + +A++ + + +H+
Sbjct: 27 CVVVVNPQTKRSRCFGFVTYSNVEEADAAMAASPHAVDGNTVELKRAVSREDSARPGAHA 86
Query: 141 ----IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRK 196
+F+G + + E++L + F G ++ +I D+ + +GFG+V F++ + +
Sbjct: 87 KVKKLFVGGLKGDVAEDDLVEHFSQFGPVEKAEIIADKQSGKKRGFGFVYFQSHDAADKA 146
Query: 197 A 197
A
Sbjct: 147 A 147
>gi|432899442|ref|XP_004076560.1| PREDICTED: RNA-binding protein Musashi homolog 2-like isoform 3
[Oryzias latipes]
Length = 328
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 57/115 (49%), Gaps = 5/115 (4%)
Query: 82 KACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGH-----VIDEHTIRVDKALTTTKS 136
+ C+ M KR+ +V F + SV+K L H ID +A +
Sbjct: 48 RECMVMRDPTTKRSRGFGFVTFTDAASVDKVLAQQKHSVLIKTIDPKVAFPRRAQPKMVT 107
Query: 137 NSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEE 191
+ IF+G + E++++ FE G++D+ L+ D+ TN +GFG++ F++E+
Sbjct: 108 RTKKIFVGGLSANTVVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFITFESED 162
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/148 (21%), Positives = 60/148 (40%), Gaps = 50/148 (33%)
Query: 130 ALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF-- 187
+L ++ + +FIG + ++ + LR F GEI ++RD T +GFG+V F
Sbjct: 12 SLNDSQHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFTD 71
Query: 188 ----------------------------KAEE--------------------EELRKAFE 199
+A+ E++++ FE
Sbjct: 72 AASVDKVLAQQKHSVLIKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFE 131
Query: 200 SCGEIDNVRLIRDQHTNIGKGFGYVNFK 227
G++D+ L+ D+ TN +GFG++ F+
Sbjct: 132 QFGKVDDAMLMFDKTTNRHRGFGFITFE 159
>gi|38327502|gb|AAR17782.1| CArG binding factor [Homo sapiens]
Length = 298
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 59/108 (54%), Gaps = 2/108 (1%)
Query: 94 RTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALT-TTKSNSHSIFIGNIPFEAEE 152
R+ +V FK+ SV+K LE+ H +D I +A K +F+G + + E
Sbjct: 65 RSRGFGFVLFKDAASVDKVLELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDTSE 124
Query: 153 EELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFES 200
E++++ F + GEI+N+ L D TN +GF ++ + +EE ++K ES
Sbjct: 125 EQIKEYFGAFGEIENIELPMDTKTNERRGFCFITY-TDEEPVKKLLES 171
>gi|47087353|ref|NP_998557.1| heterogeneous nuclear ribonucleoprotein D-like [Danio rerio]
gi|33416353|gb|AAH55525.1| Heterogeneous nuclear ribonucleoprotein D-like [Danio rerio]
Length = 296
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 53/99 (53%), Gaps = 1/99 (1%)
Query: 94 RTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKA-LTTTKSNSHSIFIGNIPFEAEE 152
R+ +V FK+ ESV++ LE+ H +D I +A K +F+G + + E
Sbjct: 69 RSRGFGFVLFKDAESVDRVLELTEHKLDGKLIDPKRAKAIKGKEPPKKVFVGGLSPDITE 128
Query: 153 EELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEE 191
E+LR+ F GEI+++ L D TN +GF +V F EE
Sbjct: 129 EQLREYFGVYGEIESIELPTDTKTNERRGFCFVTFALEE 167
>gi|449506755|ref|XP_002199353.2| PREDICTED: heterogeneous nuclear ribonucleoprotein A3 homolog
1-like [Taeniopygia guttata]
Length = 385
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 56/111 (50%), Gaps = 7/111 (6%)
Query: 84 CIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALT---TTKSNSH- 139
C+ M KR+ +V + +E V+ A+ H +D + +A++ + K +H
Sbjct: 69 CVVMRDPQTKRSRGFGFVTYSCVEEVDAAMSARPHKVDGRVVEPKRAVSREDSVKPGAHL 128
Query: 140 ---SIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 187
IF+G I + EE LR+ FE G+I+ + ++ D+ + +GF +V F
Sbjct: 129 TVKKIFVGGIKEDTEEYNLREYFEKYGKIETIEVMEDRQSGKKRGFAFVTF 179
Score = 45.1 bits (105), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 30/138 (21%), Positives = 52/138 (37%), Gaps = 52/138 (37%)
Query: 141 IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKA----------- 189
+FIG + FE ++ LR+ FE G + + ++RD T +GFG+V +
Sbjct: 42 LFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMSAR 101
Query: 190 -----------------------------------------EEEELRKAFESCGEIDNVR 208
EE LR+ FE G+I+ +
Sbjct: 102 PHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLREYFEKYGKIETIE 161
Query: 209 LIRDQHTNIGKGFGYVNF 226
++ D+ + +GF +V F
Sbjct: 162 VMEDRQSGKKRGFAFVTF 179
>gi|67972636|ref|NP_997752.2| heterogeneous nuclear ribonucleoprotein A/B [Danio rerio]
gi|42542905|gb|AAH66454.1| Heterogeneous nuclear ribonucleoprotein A/B [Danio rerio]
gi|67677894|gb|AAH97183.1| Heterogeneous nuclear ribonucleoprotein A/B [Danio rerio]
Length = 340
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 59/115 (51%), Gaps = 2/115 (1%)
Query: 85 IKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKSNSHSIFIG 144
IKM+ + R+ ++ FK V+K L H +D I KA+ K IF+G
Sbjct: 100 IKMD-PNTGRSRGFGFILFKEPSGVDKVLAQKEHRLDGRQIDPKKAMAMKKEPVKKIFVG 158
Query: 145 NIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
+ E EE +R+ F + GEI+ + L D +N +GF ++ FK EEE ++K E
Sbjct: 159 GLNPETTEERIREYFGAFGEIETIELPMDPKSNKRRGFVFITFK-EEEAVKKILE 212
Score = 37.4 bits (85), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 35/188 (18%), Positives = 71/188 (37%), Gaps = 52/188 (27%)
Query: 91 HEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKA------LTTTKSNSHSIFIG 144
HE ++N ++ +A G+ + T D A + + ++ +F+G
Sbjct: 16 HEGEDDLNGAGQYDQGNGDAQAG-AQGNAGADGTAGDDGADGGQIDASKGEEDAGKMFVG 74
Query: 145 NIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK---------------- 188
+ ++ +++L+ F GE+ + + D +T +GFG++ FK
Sbjct: 75 GLSWDTSKKDLKDYFSKFGEVTDCTIKMDPNTGRSRGFGFILFKEPSGVDKVLAQKEHRL 134
Query: 189 -----------------------------AEEEELRKAFESCGEIDNVRLIRDQHTNIGK 219
EE +R+ F + GEI+ + L D +N +
Sbjct: 135 DGRQIDPKKAMAMKKEPVKKIFVGGLNPETTEERIREYFGAFGEIETIELPMDPKSNKRR 194
Query: 220 GFGYVNFK 227
GF ++ FK
Sbjct: 195 GFVFITFK 202
>gi|126330931|ref|XP_001362287.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D [Monodelphis
domestica]
Length = 417
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 58/107 (54%), Gaps = 2/107 (1%)
Query: 94 RTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALT-TTKSNSHSIFIGNIPFEAEE 152
R+ +V FK+ SV+K LE+ H +D I +A K +F+G + + E
Sbjct: 184 RSRGFGFVLFKDAASVDKVLELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDTSE 243
Query: 153 EELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
E++++ F + GEI+N+ L D TN +GF ++ + +EE ++K E
Sbjct: 244 EQIKEYFGAFGEIENIELPMDTKTNERRGFCFITY-TDEEPVKKLLE 289
>gi|449479911|ref|XP_004177058.1| PREDICTED: RNA-binding protein Musashi homolog 2 isoform 2
[Taeniopygia guttata]
Length = 251
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 58/115 (50%), Gaps = 5/115 (4%)
Query: 82 KACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVD-----KALTTTKS 136
+ C+ M KR+ +V F + SV+K L H +D TI +A +
Sbjct: 44 RECMVMRDPTTKRSRGFGFVTFADPASVDKVLAQPHHELDSKTIDPKVAFPRRAQPKMVT 103
Query: 137 NSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEE 191
+ IF+G + E++++ FE G++++ L+ D+ TN +GFG+V F+ E+
Sbjct: 104 RTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENED 158
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/142 (23%), Positives = 57/142 (40%), Gaps = 50/142 (35%)
Query: 136 SNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF-------- 187
S S +FIG + ++ + LR F GEI ++RD T +GFG+V F
Sbjct: 14 SPSSKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDK 73
Query: 188 ----------------------KAEE--------------------EELRKAFESCGEID 205
+A+ E++++ FE G+++
Sbjct: 74 VLAQPHHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVE 133
Query: 206 NVRLIRDQHTNIGKGFGYVNFK 227
+ L+ D+ TN +GFG+V F+
Sbjct: 134 DAMLMFDKTTNRHRGFGFVTFE 155
>gi|211826253|gb|AAH11172.2| Hnrnpd protein [Mus musculus]
Length = 351
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 60/111 (54%), Gaps = 10/111 (9%)
Query: 94 RTNMNAYVRFKNLESVEKALE-----MNGHVIDEHTIRVDKALTTTKSNSHSIFIGNIPF 148
R+ +V FK ESV+K ++ +NG VID + K TK IF+G +
Sbjct: 132 RSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMK----TKEPVKKIFVGGLSP 187
Query: 149 EAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
+ EE++R+ F GE++++ L D TN +GF ++ FK EEE ++K E
Sbjct: 188 DTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFK-EEEPVKKIME 237
Score = 37.7 bits (86), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 30/133 (22%), Positives = 52/133 (39%), Gaps = 46/133 (34%)
Query: 141 IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK------------ 188
+FIG + ++ +++L+ F GE+ + L D T +GFG+V FK
Sbjct: 95 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 154
Query: 189 ----------------------------------AEEEELRKAFESCGEIDNVRLIRDQH 214
EE++R+ F GE++++ L D
Sbjct: 155 EHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNK 214
Query: 215 TNIGKGFGYVNFK 227
TN +GF ++ FK
Sbjct: 215 TNKRRGFCFITFK 227
>gi|157112076|ref|XP_001651782.1| heterogeneous nuclear ribonucleoprotein [Aedes aegypti]
gi|108878175|gb|EAT42400.1| AAEL006057-PA [Aedes aegypti]
Length = 482
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 53/104 (50%), Gaps = 5/104 (4%)
Query: 93 KRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKSNSHS-----IFIGNIP 147
+R+ ++ F+ SV+K L++ H +D I A + + S IF+G +
Sbjct: 140 QRSRGFGFITFQEPNSVDKVLKVPIHTLDGKKIDPKHATPKNRPKTQSNKTKKIFVGGVS 199
Query: 148 FEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEE 191
+ EE+R+ F G++D ++ DQ T +GFG+V F+ E+
Sbjct: 200 QDTSAEEVRQYFSQFGKVDETVMLMDQQTKRHRGFGFVTFENED 243
Score = 45.1 bits (105), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 27/137 (19%), Positives = 53/137 (38%), Gaps = 50/137 (36%)
Query: 141 IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK------------ 188
+F+G + ++ E+L + F G++ +V +++D T +GFG++ F+
Sbjct: 104 LFVGGLSWQTSSEKLSEYFGMFGKVTDVLIMKDPITQRSRGFGFITFQEPNSVDKVLKVP 163
Query: 189 --------------------------------------AEEEELRKAFESCGEIDNVRLI 210
EE+R+ F G++D ++
Sbjct: 164 IHTLDGKKIDPKHATPKNRPKTQSNKTKKIFVGGVSQDTSAEEVRQYFSQFGKVDETVML 223
Query: 211 RDQHTNIGKGFGYVNFK 227
DQ T +GFG+V F+
Sbjct: 224 MDQQTKRHRGFGFVTFE 240
>gi|74001711|ref|XP_857875.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D0 isoform 9
[Canis lupus familiaris]
Length = 287
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 60/111 (54%), Gaps = 10/111 (9%)
Query: 94 RTNMNAYVRFKNLESVEKALE-----MNGHVIDEHTIRVDKALTTTKSNSHSIFIGNIPF 148
R+ +V FK ESV+K ++ +NG VID + K TK IF+G +
Sbjct: 117 RSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMK----TKEPVKKIFVGGLSP 172
Query: 149 EAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
+ EE++R+ F GE++++ L D TN +GF ++ FK EEE ++K E
Sbjct: 173 DTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFK-EEEPVKKIME 222
Score = 37.0 bits (84), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 30/142 (21%), Positives = 55/142 (38%), Gaps = 46/142 (32%)
Query: 132 TTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK--- 188
+ + + +FIG + ++ +++L+ F GE+ + L D T +GFG+V FK
Sbjct: 71 SKNEEDEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESE 130
Query: 189 -------------------------------------------AEEEELRKAFESCGEID 205
EE++R+ F GE++
Sbjct: 131 SVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVE 190
Query: 206 NVRLIRDQHTNIGKGFGYVNFK 227
++ L D TN +GF ++ FK
Sbjct: 191 SIELPMDNKTNKRRGFCFITFK 212
>gi|351697839|gb|EHB00758.1| Putative heterogeneous nuclear ribonucleoprotein A1-like protein 3
[Heterocephalus glaber]
Length = 236
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 56/111 (50%), Gaps = 7/111 (6%)
Query: 84 CIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALT---TTKSNSH- 139
C+ M + KR+ +V + +E V+ A+ H + + +A++ + + +H
Sbjct: 43 CVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARLHKVGGRVVEPKRAVSREDSQRPGAHL 102
Query: 140 ---SIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 187
IF+G I + EE LR FE CG+I+ + +I D+ + +GF +V F
Sbjct: 103 TVKKIFVGGIKEDTEEHHLRDYFEQCGKIEVIEIITDRGSGKKRGFAFVTF 153
Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/138 (23%), Positives = 51/138 (36%), Gaps = 52/138 (37%)
Query: 141 IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF------------- 187
+FI + FE +E LR FE G + + ++RD +T +GFG+V +
Sbjct: 16 LFIQGLSFETTDESLRSCFEQWGMLMDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNAR 75
Query: 188 ---------------------------------------KAEEEELRKAFESCGEIDNVR 208
EE LR FE CG+I+ +
Sbjct: 76 LHKVGGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQCGKIEVIE 135
Query: 209 LIRDQHTNIGKGFGYVNF 226
+I D+ + +GF +V F
Sbjct: 136 IITDRGSGKKRGFAFVTF 153
>gi|326922673|ref|XP_003207572.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A3 homolog
1-like [Meleagris gallopavo]
Length = 378
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 56/111 (50%), Gaps = 7/111 (6%)
Query: 84 CIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALT---TTKSNSH- 139
C+ M KR+ +V + +E V+ A+ H +D + +A++ + K +H
Sbjct: 62 CVVMRDPQTKRSRGFGFVTYSCVEEVDAAMSARPHKVDGRVVEPKRAVSREDSVKPGAHL 121
Query: 140 ---SIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 187
IF+G I + EE LR+ FE G+I+ + ++ D+ + +GF +V F
Sbjct: 122 TVKKIFVGGIKEDTEEYNLREYFEKYGKIETIEVMEDRQSGKKRGFAFVTF 172
Score = 44.7 bits (104), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 30/138 (21%), Positives = 52/138 (37%), Gaps = 52/138 (37%)
Query: 141 IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKA----------- 189
+FIG + FE ++ LR+ FE G + + ++RD T +GFG+V +
Sbjct: 35 LFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMSAR 94
Query: 190 -----------------------------------------EEEELRKAFESCGEIDNVR 208
EE LR+ FE G+I+ +
Sbjct: 95 PHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLREYFEKYGKIETIE 154
Query: 209 LIRDQHTNIGKGFGYVNF 226
++ D+ + +GF +V F
Sbjct: 155 VMEDRQSGKKRGFAFVTF 172
>gi|363735855|ref|XP_003641619.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A3 homolog
1-like [Gallus gallus]
Length = 386
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 56/111 (50%), Gaps = 7/111 (6%)
Query: 84 CIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALT---TTKSNSH- 139
C+ M KR+ +V + +E V+ A+ H +D + +A++ + K +H
Sbjct: 70 CVVMRDPQTKRSRGFGFVTYSCVEEVDAAMSARPHKVDGRVVEPKRAVSREDSVKPGAHL 129
Query: 140 ---SIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 187
IF+G I + EE LR+ FE G+I+ + ++ D+ + +GF +V F
Sbjct: 130 TVKKIFVGGIKEDTEEYNLREYFEKYGKIETIEVMEDRQSGKKRGFAFVTF 180
Score = 45.1 bits (105), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 30/138 (21%), Positives = 52/138 (37%), Gaps = 52/138 (37%)
Query: 141 IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKA----------- 189
+FIG + FE ++ LR+ FE G + + ++RD T +GFG+V +
Sbjct: 43 LFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMSAR 102
Query: 190 -----------------------------------------EEEELRKAFESCGEIDNVR 208
EE LR+ FE G+I+ +
Sbjct: 103 PHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLREYFEKYGKIETIE 162
Query: 209 LIRDQHTNIGKGFGYVNF 226
++ D+ + +GF +V F
Sbjct: 163 VMEDRQSGKKRGFAFVTF 180
>gi|395859409|ref|XP_003802032.1| PREDICTED: probable RNA-binding protein 23 [Otolemur garnettii]
Length = 449
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 59/120 (49%), Gaps = 14/120 (11%)
Query: 93 KRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKA-------------LTTTKSNSH 139
+R+ AYV F ++SV A+ + G + I V + L S
Sbjct: 209 RRSKGIAYVEFCEIQSVPLAIGLTGQQLLGVPIIVQASQAEKNRLAAMANNLQKGSSGPM 268
Query: 140 SIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
+F+G++ F E+ LR FE G+IDN+ L++D T KG+G++ F ++ E R+A E
Sbjct: 269 HLFVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITF-SDSECARRALE 327
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 29/47 (61%)
Query: 183 GYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKVS 229
G ++F E+ LR FE G+IDN+ L++D T KG+G++ F S
Sbjct: 273 GSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDS 319
>gi|119621693|gb|EAX01288.1| hCG2020860, isoform CRA_a [Homo sapiens]
Length = 214
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 58/117 (49%), Gaps = 7/117 (5%)
Query: 84 CIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALT---TTKSNSH- 139
C+ M + KR+ +V + +E V+ A+ H +D + +A++ + + +H
Sbjct: 43 CVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHL 102
Query: 140 ---SIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEE 193
IF+G I + EE LR FE G+I+ + ++ D+ + +GF +V F + E
Sbjct: 103 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSE 159
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/138 (22%), Positives = 51/138 (36%), Gaps = 52/138 (37%)
Query: 141 IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF------------- 187
+FIG + FE +E LR FE G + + ++RD +T +GFG+V +
Sbjct: 16 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNAR 75
Query: 188 ---------------------------------------KAEEEELRKAFESCGEIDNVR 208
EE LR FE G+I+ +
Sbjct: 76 PHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIE 135
Query: 209 LIRDQHTNIGKGFGYVNF 226
++ D+ + +GF +V F
Sbjct: 136 IMTDRGSGKKRGFAFVTF 153
>gi|238505292|ref|XP_002383875.1| nucleolin protein Nsr1, putative [Aspergillus flavus NRRL3357]
gi|317151540|ref|XP_001824733.2| nucleolin protein Nsr1 [Aspergillus oryzae RIB40]
gi|220689989|gb|EED46339.1| nucleolin protein Nsr1, putative [Aspergillus flavus NRRL3357]
gi|391872083|gb|EIT81226.1| nuclear localization sequence binding protein [Aspergillus oryzae
3.042]
Length = 525
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 77/184 (41%), Gaps = 46/184 (25%)
Query: 54 VTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKAL 113
+ S F+ +GE+ VR M + R+ YV + N KA
Sbjct: 296 LQSEFEEFGELSGVRI-----------------MTERDTGRSRGFGYVEYTNAVDAAKAF 338
Query: 114 E------MNGHVI--DEHTIRV---------DKALTTTKS-------NSHSIFIGNIPFE 149
E ++G I D T R D+A +S S ++F+GNIPF
Sbjct: 339 EAKRDTEIDGRKINLDYATGRPANREQGGFQDRAQARARSFGDQASPESDTLFVGNIPFS 398
Query: 150 AEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE--SCGEIDN- 206
A E+ L + F G I +RL D + KGFGYV F + EE R+AF + EID
Sbjct: 399 ANEDSLHEVFGQKGSILGIRLPTDPESGRPKGFGYVQF-SSVEEAREAFNELNGAEIDGR 457
Query: 207 -VRL 209
VRL
Sbjct: 458 PVRL 461
Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 45/81 (55%), Gaps = 3/81 (3%)
Query: 138 SHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKA 197
S ++F+GN+ + +E L+ FE GE+ VR++ ++ T +GFGYV + + KA
Sbjct: 279 SANLFVGNLSWNVDEAWLQSEFEEFGELSGVRIMTERDTGRSRGFGYVEY-TNAVDAAKA 337
Query: 198 FES--CGEIDNVRLIRDQHTN 216
FE+ EID ++ D T
Sbjct: 338 FEAKRDTEIDGRKINLDYATG 358
Score = 37.4 bits (85), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 23/44 (52%)
Query: 183 GYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 226
G + F A E+ L + F G I +RL D + KGFGYV F
Sbjct: 393 GNIPFSANEDSLHEVFGQKGSILGIRLPTDPESGRPKGFGYVQF 436
>gi|195471585|ref|XP_002088083.1| GE14328 [Drosophila yakuba]
gi|194174184|gb|EDW87795.1| GE14328 [Drosophila yakuba]
Length = 590
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 62/115 (53%), Gaps = 15/115 (13%)
Query: 99 AYVRFKNLESVEKALEMNGH------VIDEHTI----RVDKALTTTKSNSHS----IFIG 144
AY+ F++ ESV AL ++G ++ +HT R+ A + SH+ +++G
Sbjct: 277 AYIEFEDPESVALALGLSGQRLLGVPIMVQHTQAEKNRLQNAAPAFQPKSHTGPMRLYVG 336
Query: 145 NIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
++ F E+ LR FE G+ID ++LI D T KG+G++ + ++ +KA E
Sbjct: 337 SLHFNITEDMLRGIFEPFGKIDAIQLIMDTETGRSKGYGFITYH-NADDAKKALE 390
>gi|395542045|ref|XP_003772945.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D-like
[Sarcophilus harrisii]
Length = 475
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 62/116 (53%), Gaps = 3/116 (2%)
Query: 85 IKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALT-TTKSNSHSIFI 143
IK + V R+ +V FK+ SV+K LE+ H +D I +A K +F+
Sbjct: 234 IKTDPV-TGRSRGFGFVLFKDAASVDKVLELKEHKLDGKLIDPKRAKALKGKEPPKKVFV 292
Query: 144 GNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
G + + EE++++ F + GEI+N+ L D TN +GF ++ + +EE ++K E
Sbjct: 293 GGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITY-TDEEPVKKLLE 347
>gi|442761059|gb|JAA72688.1| Putative transcriptional coactivator caper rrm superfamily, partial
[Ixodes ricinus]
Length = 235
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 60/126 (47%), Gaps = 19/126 (15%)
Query: 93 KRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKA------------------LTTT 134
+R+ AYV F+++ESV A+ +NG + I V L
Sbjct: 81 RRSKGIAYVEFQDVESVPLAMGLNGQKLFGIPIVVQPTQAERNRAAAQSASTSSSTLQRG 140
Query: 135 KSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEEL 194
+++G++ F E+ L+ FE G+ID + LI+D TN KG+G++ F + E+
Sbjct: 141 NIGPMRLYVGSLHFNITEDMLKGIFEPFGKIDKIELIKDMETNRSKGYGFITFH-DSEDA 199
Query: 195 RKAFES 200
+KA E
Sbjct: 200 KKALEQ 205
>gi|410292490|gb|JAA24845.1| heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA
binding protein 1, 37kDa) [Pan troglodytes]
Length = 336
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 60/111 (54%), Gaps = 10/111 (9%)
Query: 94 RTNMNAYVRFKNLESVEKALE-----MNGHVIDEHTIRVDKALTTTKSNSHSIFIGNIPF 148
R+ +V FK ESV+K ++ +NG VID + K TK IF+G +
Sbjct: 117 RSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMK----TKEPVKKIFVGGLSP 172
Query: 149 EAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
+ EE++R+ F GE++++ L D TN +GF ++ FK EEE ++K E
Sbjct: 173 DTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFK-EEEPVKKIME 222
Score = 37.0 bits (84), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 30/133 (22%), Positives = 52/133 (39%), Gaps = 46/133 (34%)
Query: 141 IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK------------ 188
+FIG + ++ +++L+ F GE+ + L D T +GFG+V FK
Sbjct: 80 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 139
Query: 189 ----------------------------------AEEEELRKAFESCGEIDNVRLIRDQH 214
EE++R+ F GE++++ L D
Sbjct: 140 EHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNK 199
Query: 215 TNIGKGFGYVNFK 227
TN +GF ++ FK
Sbjct: 200 TNKRRGFCFITFK 212
>gi|388578824|gb|EIM19158.1| RNA-binding domain-containing protein [Wallemia sebi CBS 633.66]
Length = 430
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 70/135 (51%), Gaps = 19/135 (14%)
Query: 94 RTNMNAYVRFKNLESVEKALEM-NGHVIDEHTIRVD-------------KALTTTKSN-S 138
R+ YV F++ E KA++ G ID +RVD K+ +S+ S
Sbjct: 244 RSRGFGYVEFESHELAVKAMDQFAGKEIDGRPVRVDLSVPRAPNPEKRAKSFGDQRSDPS 303
Query: 139 HSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAF 198
+++FIGN+ F E+ + + F G +++VR+ D+ T KGFGYV+F A+ + + A
Sbjct: 304 NTLFIGNLSFNTNEDRVWEFFGEFGSVESVRVPTDRETGAPKGFGYVSF-ADVDTAKAAI 362
Query: 199 ESCG--EIDNVRLIR 211
+ E+D R+IR
Sbjct: 363 DGAAGSELDG-RVIR 376
Score = 45.1 bits (105), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 44/83 (53%), Gaps = 2/83 (2%)
Query: 130 ALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKA 189
A T N+ IF+G + + +++ L+ FE G + R+ D+ + +GFGYV F++
Sbjct: 196 AEAITLDNTPQIFVGQLSWNIDDDWLKSEFEQLGPVKTARVQLDRQSGRSRGFGYVEFES 255
Query: 190 EEEELRKAFESCG-EIDNVRLIR 211
E ++ + G EID R +R
Sbjct: 256 HELAVKAMDQFAGKEIDG-RPVR 277
>gi|354472305|ref|XP_003498380.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A3-like
[Cricetulus griseus]
Length = 423
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 55/111 (49%), Gaps = 7/111 (6%)
Query: 84 CIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALT---TTKSNSH- 139
C+ M KR+ +V + +E V+ A+ H +D + +A++ + K +H
Sbjct: 108 CVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHL 167
Query: 140 ---SIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 187
IF+G I + EE LR FE G+I+ + ++ D+ + +GF +V F
Sbjct: 168 TVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTF 218
Score = 45.1 bits (105), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 31/52 (59%)
Query: 141 IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEE 192
+FIG + FE ++ LR+ FE G + + ++RD T +GFG+V + EE
Sbjct: 81 LFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEE 132
>gi|195012195|ref|XP_001983522.1| GH15941 [Drosophila grimshawi]
gi|193897004|gb|EDV95870.1| GH15941 [Drosophila grimshawi]
Length = 477
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 67/158 (42%), Gaps = 38/158 (24%)
Query: 46 SKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMN---AYVR 102
+K H F PYGE+E DI + V +K T N AYV+
Sbjct: 33 NKAHTEEDFREAFAPYGEIE----------DIWV----------VKDKHTQENKGIAYVK 72
Query: 103 FKNLESVEKALE-MNGHVIDEHTIRVDKALTTTKSNSHS------------IFIGNIPFE 149
F KA E MNG I + T R K L N S +FI IP
Sbjct: 73 FSKTSDAAKAQEQMNGKTIGK-TDRTLKVLVAANRNQGSNKSENEQEKYVRLFI-VIPKT 130
Query: 150 AEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 187
A E+++R F GE++ V ++R+++ KGFGYV F
Sbjct: 131 ATEDDIRDEFAQWGEVETVTIVREKNNGSPKGFGYVRF 168
Score = 41.2 bits (95), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 25/36 (69%)
Query: 191 EEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 226
EE+ R+AF GEI+++ +++D+HT KG YV F
Sbjct: 38 EEDFREAFAPYGEIEDIWVVKDKHTQENKGIAYVKF 73
>gi|193598819|ref|XP_001951232.1| PREDICTED: cleavage stimulation factor subunit 2-like isoform 1
[Acyrthosiphon pisum]
gi|328706164|ref|XP_003243012.1| PREDICTED: cleavage stimulation factor subunit 2-like isoform 2
[Acyrthosiphon pisum]
Length = 386
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 36/56 (64%)
Query: 139 HSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEEL 194
S+F+GNIP+EA EE+L+ F G + + +L+ D+ T KG+G+ +K +E L
Sbjct: 12 RSVFVGNIPYEATEEKLKDIFSEVGPVISFKLVYDRETGKPKGYGFCEYKDQETAL 67
Score = 42.0 bits (97), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 32/55 (58%)
Query: 182 FGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKVSFTTLSSI 236
G + ++A EE+L+ F G + + +L+ D+ T KG+G+ +K T LS++
Sbjct: 16 VGNIPYEATEEKLKDIFSEVGPVISFKLVYDRETGKPKGYGFCEYKDQETALSAM 70
>gi|145492248|ref|XP_001432122.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124399231|emb|CAK64725.1| unnamed protein product [Paramecium tetraurelia]
Length = 559
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 54/124 (43%), Gaps = 13/124 (10%)
Query: 99 AYVRFKNLESVEKALEMNGHVIDEHTIRVDK-----------ALTTTKSNSHSIFIGNIP 147
A+VRF + A+E +G TI V+K S + FIGN+
Sbjct: 354 AFVRFSTEDGQSAAVEYSGQEHMGRTITVEKTKPRDQRPQQGGQQGGSGESTTCFIGNMS 413
Query: 148 FEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNV 207
F A E+ L FE CG+I VR+ +D +GFGYV F + E +K G
Sbjct: 414 FYATEDSLYPVFEDCGKIKEVRIAKDAEGK-SRGFGYVEF-FDNESAQKGLAKTGTDVEG 471
Query: 208 RLIR 211
R IR
Sbjct: 472 RAIR 475
Score = 42.0 bits (97), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Query: 139 HSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEE 191
H +F+ + F+A E+++++ F+ CG I++V L++ + N KG +V F E+
Sbjct: 311 HEVFVRGLSFDATEQDIKEFFDECGNINSVNLLKGPNGN-SKGIAFVRFSTED 362
>gi|432899440|ref|XP_004076559.1| PREDICTED: RNA-binding protein Musashi homolog 2-like isoform 2
[Oryzias latipes]
Length = 347
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 57/115 (49%), Gaps = 5/115 (4%)
Query: 82 KACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGH-----VIDEHTIRVDKALTTTKS 136
+ C+ M KR+ +V F + SV+K L H ID +A +
Sbjct: 48 RECMVMRDPTTKRSRGFGFVTFTDAASVDKVLAQQKHSVLIKTIDPKVAFPRRAQPKMVT 107
Query: 137 NSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEE 191
+ IF+G + E++++ FE G++D+ L+ D+ TN +GFG++ F++E+
Sbjct: 108 RTKKIFVGGLSANTVVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFITFESED 162
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/148 (21%), Positives = 60/148 (40%), Gaps = 50/148 (33%)
Query: 130 ALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF-- 187
+L ++ + +FIG + ++ + LR F GEI ++RD T +GFG+V F
Sbjct: 12 SLNDSQHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFTD 71
Query: 188 ----------------------------KAEE--------------------EELRKAFE 199
+A+ E++++ FE
Sbjct: 72 AASVDKVLAQQKHSVLIKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFE 131
Query: 200 SCGEIDNVRLIRDQHTNIGKGFGYVNFK 227
G++D+ L+ D+ TN +GFG++ F+
Sbjct: 132 QFGKVDDAMLMFDKTTNRHRGFGFITFE 159
>gi|432899438|ref|XP_004076558.1| PREDICTED: RNA-binding protein Musashi homolog 2-like isoform 1
[Oryzias latipes]
Length = 328
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 57/115 (49%), Gaps = 5/115 (4%)
Query: 82 KACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGH-----VIDEHTIRVDKALTTTKS 136
+ C+ M KR+ +V F + SV+K L H ID +A +
Sbjct: 48 RECMVMRDPTTKRSRGFGFVTFTDAASVDKVLAQQKHSVLIKTIDPKVAFPRRAQPKMVT 107
Query: 137 NSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEE 191
+ IF+G + E++++ FE G++D+ L+ D+ TN +GFG++ F++E+
Sbjct: 108 RTKKIFVGGLSANTVVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFITFESED 162
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/148 (21%), Positives = 60/148 (40%), Gaps = 50/148 (33%)
Query: 130 ALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF-- 187
+L ++ + +FIG + ++ + LR F GEI ++RD T +GFG+V F
Sbjct: 12 SLNDSQHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFTD 71
Query: 188 ----------------------------KAEE--------------------EELRKAFE 199
+A+ E++++ FE
Sbjct: 72 AASVDKVLAQQKHSVLIKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFE 131
Query: 200 SCGEIDNVRLIRDQHTNIGKGFGYVNFK 227
G++D+ L+ D+ TN +GFG++ F+
Sbjct: 132 QFGKVDDAMLMFDKTTNRHRGFGFITFE 159
>gi|149055454|gb|EDM07038.1| rCG38164 [Rattus norvegicus]
Length = 363
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 41/68 (60%), Gaps = 7/68 (10%)
Query: 127 VDKALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVN 186
VD++L S+F+GNIP+EA EE+L+ F G + + RL+ D+ T KG+G+
Sbjct: 11 VDRSL-------RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCE 63
Query: 187 FKAEEEEL 194
++ +E L
Sbjct: 64 YQDQETAL 71
Score = 42.0 bits (97), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 32/55 (58%)
Query: 182 FGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKVSFTTLSSI 236
G + ++A EE+L+ F G + + RL+ D+ T KG+G+ ++ T LS++
Sbjct: 20 VGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAM 74
>gi|443687463|gb|ELT90434.1| hypothetical protein CAPTEDRAFT_110688, partial [Capitella teleta]
Length = 353
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 68/140 (48%), Gaps = 12/140 (8%)
Query: 80 PRKACIKMNKVHEKRTNMNAYVRFKNLESVEKAL-EMNGHVIDEHTIRVDKAL---TTTK 135
P K C +HE A+V F S AL MN ++V+ A T TK
Sbjct: 23 PCKGC---KIIHETGNEPYAFVEFSEHSSAALALGTMNKRTCFGREMKVNWATSPGTQTK 79
Query: 136 SNS---HSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEE 192
++ H IF+G++ + E +LR+AF+ G I + ++IRD T KG+G+V++ E +
Sbjct: 80 QDTSKHHHIFVGDLSPDIETPQLREAFKPFGTISDCKIIRDPQTLKSKGYGFVSY-VERK 138
Query: 193 ELRKAFESC-GEIDNVRLIR 211
E A S G+ R IR
Sbjct: 139 EAENAINSMNGQWIGSRAIR 158
>gi|14110414|ref|NP_002129.2| heterogeneous nuclear ribonucleoprotein D0 isoform c [Homo sapiens]
gi|114594009|ref|XP_001143722.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D0 isoform 2
[Pan troglodytes]
gi|395735083|ref|XP_003776519.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D0 isoform 2
[Pongo abelii]
gi|402869389|ref|XP_003898745.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D0 isoform 1
[Papio anubis]
gi|870745|dbj|BAA09523.1| heterogeneous nuclear ribonucleoprotein D (hnRNP D) [Homo sapiens]
gi|2815613|gb|AAC23475.1| heterogeneous nuclear ribonucleoprotein D [Homo sapiens]
gi|18645125|gb|AAH23977.1| Heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA
binding protein 1, 37kDa) [Homo sapiens]
gi|19683928|gb|AAH26015.1| Heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA
binding protein 1, 37kDa) [Homo sapiens]
gi|119626282|gb|EAX05877.1| heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA
binding protein 1, 37kDa), isoform CRA_e [Homo sapiens]
gi|119626286|gb|EAX05881.1| heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA
binding protein 1, 37kDa), isoform CRA_e [Homo sapiens]
gi|119626287|gb|EAX05882.1| heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA
binding protein 1, 37kDa), isoform CRA_e [Homo sapiens]
gi|208966456|dbj|BAG73242.1| heterogeneous nuclear ribonucleoprotein D [synthetic construct]
gi|380783617|gb|AFE63684.1| heterogeneous nuclear ribonucleoprotein D0 isoform c [Macaca
mulatta]
gi|383417963|gb|AFH32195.1| heterogeneous nuclear ribonucleoprotein D0 isoform c [Macaca
mulatta]
gi|384940050|gb|AFI33630.1| heterogeneous nuclear ribonucleoprotein D0 isoform c [Macaca
mulatta]
gi|410265342|gb|JAA20637.1| heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA
binding protein 1, 37kDa) [Pan troglodytes]
gi|410292488|gb|JAA24844.1| heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA
binding protein 1, 37kDa) [Pan troglodytes]
Length = 306
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 60/111 (54%), Gaps = 10/111 (9%)
Query: 94 RTNMNAYVRFKNLESVEKALE-----MNGHVIDEHTIRVDKALTTTKSNSHSIFIGNIPF 148
R+ +V FK ESV+K ++ +NG VID + K TK IF+G +
Sbjct: 136 RSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMK----TKEPVKKIFVGGLSP 191
Query: 149 EAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
+ EE++R+ F GE++++ L D TN +GF ++ FK EEE ++K E
Sbjct: 192 DTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFK-EEEPVKKIME 241
Score = 38.1 bits (87), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 31/142 (21%), Positives = 54/142 (38%), Gaps = 46/142 (32%)
Query: 132 TTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK--- 188
T + +FIG + ++ +++L+ F GE+ + L D T +GFG+V FK
Sbjct: 90 ATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESE 149
Query: 189 -------------------------------------------AEEEELRKAFESCGEID 205
EE++R+ F GE++
Sbjct: 150 SVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVE 209
Query: 206 NVRLIRDQHTNIGKGFGYVNFK 227
++ L D TN +GF ++ FK
Sbjct: 210 SIELPMDNKTNKRRGFCFITFK 231
>gi|410351151|gb|JAA42179.1| heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA
binding protein 1, 37kDa) [Pan troglodytes]
Length = 307
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 60/111 (54%), Gaps = 10/111 (9%)
Query: 94 RTNMNAYVRFKNLESVEKALE-----MNGHVIDEHTIRVDKALTTTKSNSHSIFIGNIPF 148
R+ +V FK ESV+K ++ +NG VID + K TK IF+G +
Sbjct: 137 RSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMK----TKEPVKKIFVGGLSP 192
Query: 149 EAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
+ EE++R+ F GE++++ L D TN +GF ++ FK EEE ++K E
Sbjct: 193 DTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFK-EEEPVKKIME 242
Score = 38.1 bits (87), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 31/142 (21%), Positives = 54/142 (38%), Gaps = 46/142 (32%)
Query: 132 TTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK--- 188
T + +FIG + ++ +++L+ F GE+ + L D T +GFG+V FK
Sbjct: 91 ATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESE 150
Query: 189 -------------------------------------------AEEEELRKAFESCGEID 205
EE++R+ F GE++
Sbjct: 151 SVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVE 210
Query: 206 NVRLIRDQHTNIGKGFGYVNFK 227
++ L D TN +GF ++ FK
Sbjct: 211 SIELPMDNKTNKRRGFCFITFK 232
>gi|395513917|ref|XP_003761168.1| PREDICTED: LOW QUALITY PROTEIN: probable RNA-binding protein 19
[Sarcophilus harrisii]
Length = 954
Score = 56.2 bits (134), Expect = 1e-05, Method: Composition-based stats.
Identities = 35/118 (29%), Positives = 65/118 (55%), Gaps = 17/118 (14%)
Query: 99 AYVRFKNLESVEKAL-EMNGHVIDEHTIRV---DKAL-----------TTTKSNSHSIFI 143
+V ++ E +KAL ++ G V+D H + V ++A+ T K + I +
Sbjct: 764 GFVEYRKPEQAQKALKQLQGSVVDGHKLEVKISERAIKPVVTSARQRQTAHKQKTSKILV 823
Query: 144 GNIPFEAEEEELRKAFESCGEIDNVRLIRDQH-TNIGKGFGYVNFKAEEEELRKAFES 200
NIPF+A ++E+R+ F + GE+ VRL + T +GFG+V+F +++ ++AF +
Sbjct: 824 RNIPFQANKQEIRELFSTFGELKTVRLPKKMTGTGPHRGFGFVDFLTKQDA-KRAFNA 880
Score = 39.7 bits (91), Expect = 1.1, Method: Composition-based stats.
Identities = 47/199 (23%), Positives = 77/199 (38%), Gaps = 39/199 (19%)
Query: 59 KPYGEVE-----TVRFRSVP-------VADITLPRKACIKMNKVHEKRTNMNAYV--RFK 104
KP + E TV+ R P V + +P K + + V N YV F
Sbjct: 274 KPAAQSEPTTAYTVKLRGAPFNVTEQNVREFLVPLKP-VAIRIVRNAHGNKTGYVFVDFS 332
Query: 105 NLESVEKALEMNGHVIDEHTIRV-------------DKALTTTK-----------SNSHS 140
+ VEKAL+ N + I V DK + + ++S
Sbjct: 333 SEGDVEKALKHNKEYMGGRYIEVFREKGPRVGPKPQDKKVWQGRELKEGEEEEDLADSGR 392
Query: 141 IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFES 200
+F+ N+P+ + EE+L K F G + + D T KGF +V + E ++ E
Sbjct: 393 LFVRNLPYTSTEEDLEKIFAKYGPLSEIHYPIDGLTKKPKGFAFVTYMFPEHAVKAFAEV 452
Query: 201 CGEIDNVRLIRDQHTNIGK 219
G++ R++ + I K
Sbjct: 453 DGQVFQGRMLHVLPSTIKK 471
>gi|443725988|gb|ELU13330.1| hypothetical protein CAPTEDRAFT_219071 [Capitella teleta]
Length = 453
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 56/116 (48%), Gaps = 8/116 (6%)
Query: 84 CIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTI--------RVDKALTTTK 135
C+ M ++ +V FK+ V+ L HV+D I ++K + +
Sbjct: 37 CVVMKNPQTGKSRGFGFVTFKDPSCVKTVLANQPHVLDSRQIDPKQCNPRSMNKGGKSAE 96
Query: 136 SNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEE 191
++ +F+G +P E+E+++ F GE+ +V ++ DQ +GFG++ F EE
Sbjct: 97 NSKRKVFMGGLPSNITEDEIKEHFAEFGEVQDVVIMVDQDKERSRGFGFLTFDCEE 152
>gi|426372865|ref|XP_004053334.1| PREDICTED: putative heterogeneous nuclear ribonucleoprotein A1-like
3-like [Gorilla gorilla gorilla]
Length = 306
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 56/111 (50%), Gaps = 7/111 (6%)
Query: 84 CIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALT---TTKSNSH- 139
C+ M + KR+ +V + +E V+ A+ H +D + +A++ + + +H
Sbjct: 168 CVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHL 227
Query: 140 ---SIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 187
IF+G I + EE LR FE G+I+ + ++ D+ + +GF +V F
Sbjct: 228 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTF 278
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 31/52 (59%)
Query: 141 IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEE 192
+FIG + FE +E LR FE G + + ++RD +T +GFG+V + EE
Sbjct: 141 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEE 192
>gi|46806499|dbj|BAD17623.1| putative heterogeneous nuclearribonucleoprotein A2 [Oryza sativa
Japonica Group]
gi|46806518|dbj|BAD17631.1| putative heterogeneous nuclearribonucleoprotein A2 [Oryza sativa
Japonica Group]
Length = 374
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 57/111 (51%), Gaps = 7/111 (6%)
Query: 87 MNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKSNSHS------ 140
M H K +V F + ++K LE + HVID T+ V + + + +S
Sbjct: 98 MKDKHTKMPRGFGFVTFSDPSVIDKVLE-DEHVIDGRTVEVKRTVPREEMSSKDGPKTRK 156
Query: 141 IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEE 191
IF+G +P E+ELR+ F G+I +++ D T +GFG+V F++E+
Sbjct: 157 IFVGGLPSSLTEDELREHFSPYGKIVEHQIMLDHSTGRSRGFGFVTFESED 207
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/150 (23%), Positives = 56/150 (37%), Gaps = 50/150 (33%)
Query: 128 DKALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 187
D +S IF+G + +E EE K FE G I + +++D+HT + +GFG+V F
Sbjct: 55 DDGRAPGGDSSGKIFVGGVAWETTEESFSKHFEKYGAITDSVIMKDKHTKMPRGFGFVTF 114
Query: 188 KAE--------------------------------------------------EEELRKA 197
E+ELR+
Sbjct: 115 SDPSVIDKVLEDEHVIDGRTVEVKRTVPREEMSSKDGPKTRKIFVGGLPSSLTEDELREH 174
Query: 198 FESCGEIDNVRLIRDQHTNIGKGFGYVNFK 227
F G+I +++ D T +GFG+V F+
Sbjct: 175 FSPYGKIVEHQIMLDHSTGRSRGFGFVTFE 204
>gi|384245275|gb|EIE18770.1| RNA-binding domain-containing protein [Coccomyxa subellipsoidea
C-169]
Length = 351
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 71/130 (54%), Gaps = 9/130 (6%)
Query: 90 VHEKRTNMNA---YVRFKNLESVEKALE-MNGHVIDEHTIRVDKALTTTK----SNSHSI 141
+ +K T ++A +V+F + + + AL+ +NG V+ +RV+ A + ++ I
Sbjct: 54 IKDKLTGLSAGYGFVQFLDHRAADMALQSLNGRVLHGQELRVNWAFQKDQREDSASQFQI 113
Query: 142 FIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESC 201
F+G++ + ++ L +AF+SCG D R++ D +T KG+G+V+FK + + +
Sbjct: 114 FVGDLASDINDKLLCEAFQSCGCAD-ARVMWDHNTGRSKGYGFVSFKTRADAEQALSQMS 172
Query: 202 GEIDNVRLIR 211
G + R IR
Sbjct: 173 GTMLGSRRIR 182
Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 34/157 (21%), Positives = 69/157 (43%), Gaps = 53/157 (33%)
Query: 122 EHTIRVDKALTTTKSNSHSIFIGNI-PFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGK 180
+ + + A + + ++++GN+ PF + L++ F + G++ +++I+D+ T +
Sbjct: 5 QQAVSQNPARLGSGDAAKALYVGNLHPF-VTDAMLQEIFSTLGQVGEIKIIKDKLTGLSA 63
Query: 181 GFGYVNF---KAEE-------------EELR----------------------------- 195
G+G+V F +A + +ELR
Sbjct: 64 GYGFVQFLDHRAADMALQSLNGRVLHGQELRVNWAFQKDQREDSASQFQIFVGDLASDIN 123
Query: 196 -----KAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK 227
+AF+SCG D R++ D +T KG+G+V+FK
Sbjct: 124 DKLLCEAFQSCGCAD-ARVMWDHNTGRSKGYGFVSFK 159
>gi|148688462|gb|EDL20409.1| cleavage stimulation factor, 3' pre-RNA subunit 2 [Mus musculus]
Length = 363
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 41/68 (60%), Gaps = 7/68 (10%)
Query: 127 VDKALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVN 186
VD++L S+F+GNIP+EA EE+L+ F G + + RL+ D+ T KG+G+
Sbjct: 11 VDRSL-------RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCE 63
Query: 187 FKAEEEEL 194
++ +E L
Sbjct: 64 YQDQETAL 71
Score = 42.0 bits (97), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 32/55 (58%)
Query: 182 FGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKVSFTTLSSI 236
G + ++A EE+L+ F G + + RL+ D+ T KG+G+ ++ T LS++
Sbjct: 20 VGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAM 74
>gi|25121993|ref|NP_733839.1| RNA-binding protein Musashi homolog 2 isoform b [Homo sapiens]
gi|332848594|ref|XP_003315679.1| PREDICTED: uncharacterized protein LOC748578 [Pan troglodytes]
gi|426347417|ref|XP_004041349.1| PREDICTED: RNA-binding protein Musashi homolog 2 [Gorilla gorilla
gorilla]
gi|21752839|dbj|BAC04244.1| unnamed protein product [Homo sapiens]
gi|119614916|gb|EAW94510.1| musashi homolog 2 (Drosophila), isoform CRA_e [Homo sapiens]
Length = 251
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 58/115 (50%), Gaps = 5/115 (4%)
Query: 82 KACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVD-----KALTTTKS 136
+ C+ M KR+ +V F + SV+K L H +D TI +A +
Sbjct: 44 RECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQPHHELDSKTIDPKVAFPRRAQPKMVT 103
Query: 137 NSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEE 191
+ IF+G + E++++ FE G++++ L+ D+ TN +GFG+V F+ E+
Sbjct: 104 RTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENED 158
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/142 (23%), Positives = 57/142 (40%), Gaps = 50/142 (35%)
Query: 136 SNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF-------- 187
S S +FIG + ++ + LR F GEI ++RD T +GFG+V F
Sbjct: 14 SPSSKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDK 73
Query: 188 ----------------------KAEE--------------------EELRKAFESCGEID 205
+A+ E++++ FE G+++
Sbjct: 74 VLGQPHHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVE 133
Query: 206 NVRLIRDQHTNIGKGFGYVNFK 227
+ L+ D+ TN +GFG+V F+
Sbjct: 134 DAMLMFDKTTNRHRGFGFVTFE 155
>gi|14110420|ref|NP_112738.1| heterogeneous nuclear ribonucleoprotein D0 isoform a [Homo sapiens]
gi|386782249|ref|NP_001247736.1| heterogeneous nuclear ribonucleoprotein D0 [Macaca mulatta]
gi|114594005|ref|XP_001143807.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D0 isoform 3
[Pan troglodytes]
gi|297673867|ref|XP_002814969.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D0 isoform 1
[Pongo abelii]
gi|402869391|ref|XP_003898746.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D0 isoform 2
[Papio anubis]
gi|13124489|sp|Q14103.1|HNRPD_HUMAN RecName: Full=Heterogeneous nuclear ribonucleoprotein D0;
Short=hnRNP D0; AltName: Full=AU-rich element
RNA-binding protein 1
gi|870749|dbj|BAA09525.1| heterogeneous nuclear ribonucleoprotein D (hnRNP D) [Homo sapiens]
gi|2815612|gb|AAC23474.1| heterogeneous nuclear ribonucleoprotein D [Homo sapiens]
gi|12803191|gb|AAH02401.1| Heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA
binding protein 1, 37kDa) [Homo sapiens]
gi|63990762|gb|AAY40913.1| unknown [Homo sapiens]
gi|119626280|gb|EAX05875.1| heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA
binding protein 1, 37kDa), isoform CRA_d [Homo sapiens]
gi|119626281|gb|EAX05876.1| heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA
binding protein 1, 37kDa), isoform CRA_d [Homo sapiens]
gi|123982850|gb|ABM83166.1| heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA
binding protein 1, 37kDa) [synthetic construct]
gi|123997529|gb|ABM86366.1| heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA
binding protein 1, 37kDa) [synthetic construct]
gi|355687289|gb|EHH25873.1| Heterogeneous nuclear ribonucleoprotein D0 [Macaca mulatta]
gi|380783619|gb|AFE63685.1| heterogeneous nuclear ribonucleoprotein D0 isoform a [Macaca
mulatta]
gi|383417965|gb|AFH32196.1| heterogeneous nuclear ribonucleoprotein D0 isoform a [Macaca
mulatta]
gi|384940052|gb|AFI33631.1| heterogeneous nuclear ribonucleoprotein D0 isoform a [Macaca
mulatta]
Length = 355
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 60/111 (54%), Gaps = 10/111 (9%)
Query: 94 RTNMNAYVRFKNLESVEKALE-----MNGHVIDEHTIRVDKALTTTKSNSHSIFIGNIPF 148
R+ +V FK ESV+K ++ +NG VID + K TK IF+G +
Sbjct: 136 RSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMK----TKEPVKKIFVGGLSP 191
Query: 149 EAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
+ EE++R+ F GE++++ L D TN +GF ++ FK EEE ++K E
Sbjct: 192 DTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFK-EEEPVKKIME 241
Score = 38.5 bits (88), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 31/142 (21%), Positives = 54/142 (38%), Gaps = 46/142 (32%)
Query: 132 TTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK--- 188
T + +FIG + ++ +++L+ F GE+ + L D T +GFG+V FK
Sbjct: 90 ATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESE 149
Query: 189 -------------------------------------------AEEEELRKAFESCGEID 205
EE++R+ F GE++
Sbjct: 150 SVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVE 209
Query: 206 NVRLIRDQHTNIGKGFGYVNFK 227
++ L D TN +GF ++ FK
Sbjct: 210 SIELPMDNKTNKRRGFCFITFK 231
>gi|410351149|gb|JAA42178.1| heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA
binding protein 1, 37kDa) [Pan troglodytes]
Length = 356
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 60/111 (54%), Gaps = 10/111 (9%)
Query: 94 RTNMNAYVRFKNLESVEKALE-----MNGHVIDEHTIRVDKALTTTKSNSHSIFIGNIPF 148
R+ +V FK ESV+K ++ +NG VID + K TK IF+G +
Sbjct: 137 RSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMK----TKEPVKKIFVGGLSP 192
Query: 149 EAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
+ EE++R+ F GE++++ L D TN +GF ++ FK EEE ++K E
Sbjct: 193 DTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFK-EEEPVKKIME 242
Score = 38.5 bits (88), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 31/142 (21%), Positives = 54/142 (38%), Gaps = 46/142 (32%)
Query: 132 TTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK--- 188
T + +FIG + ++ +++L+ F GE+ + L D T +GFG+V FK
Sbjct: 91 ATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESE 150
Query: 189 -------------------------------------------AEEEELRKAFESCGEID 205
EE++R+ F GE++
Sbjct: 151 SVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVE 210
Query: 206 NVRLIRDQHTNIGKGFGYVNFK 227
++ L D TN +GF ++ FK
Sbjct: 211 SIELPMDNKTNKRRGFCFITFK 232
>gi|397524667|ref|XP_003832310.1| PREDICTED: LOW QUALITY PROTEIN: heterogeneous nuclear
ribonucleoprotein D0 [Pan paniscus]
Length = 355
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 60/111 (54%), Gaps = 10/111 (9%)
Query: 94 RTNMNAYVRFKNLESVEKALE-----MNGHVIDEHTIRVDKALTTTKSNSHSIFIGNIPF 148
R+ +V FK ESV+K ++ +NG VID + K TK IF+G +
Sbjct: 136 RSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMK----TKEPVKKIFVGGLSP 191
Query: 149 EAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
+ EE++R+ F GE++++ L D TN +GF ++ FK EEE ++K E
Sbjct: 192 DTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFK-EEEPVKKIME 241
Score = 38.5 bits (88), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 31/142 (21%), Positives = 54/142 (38%), Gaps = 46/142 (32%)
Query: 132 TTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK--- 188
T + +FIG + ++ +++L+ F GE+ + L D T +GFG+V FK
Sbjct: 90 ATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESE 149
Query: 189 -------------------------------------------AEEEELRKAFESCGEID 205
EE++R+ F GE++
Sbjct: 150 SVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVE 209
Query: 206 NVRLIRDQHTNIGKGFGYVNFK 227
++ L D TN +GF ++ FK
Sbjct: 210 SIELPMDNKTNKRRGFCFITFK 231
>gi|327284183|ref|XP_003226818.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A3 homolog
1-like [Anolis carolinensis]
Length = 386
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 55/111 (49%), Gaps = 7/111 (6%)
Query: 84 CIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALT---TTKSNSH- 139
C+ M KR+ +V + +E V+ A+ H +D + +A++ + K +H
Sbjct: 66 CVVMRDPQTKRSRGFGFVTYSCVEEVDAAMAARPHKVDGRVVEPKRAVSREDSVKPGAHL 125
Query: 140 ---SIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 187
IF+G I + EE LR FE G+I+ + ++ D+ + +GF +V F
Sbjct: 126 TVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTF 176
Score = 45.4 bits (106), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 30/138 (21%), Positives = 51/138 (36%), Gaps = 52/138 (37%)
Query: 141 IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKA----------- 189
+FIG + FE ++ LR+ FE G + + ++RD T +GFG+V +
Sbjct: 39 LFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMAAR 98
Query: 190 -----------------------------------------EEEELRKAFESCGEIDNVR 208
EE LR FE G+I+ +
Sbjct: 99 PHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIE 158
Query: 209 LIRDQHTNIGKGFGYVNF 226
++ D+ + +GF +V F
Sbjct: 159 VMEDRQSGKKRGFAFVTF 176
>gi|395845801|ref|XP_003795610.1| PREDICTED: RNA-binding protein Musashi homolog 2 [Otolemur
garnettii]
Length = 324
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 59/115 (51%), Gaps = 5/115 (4%)
Query: 82 KACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVD-----KALTTTKS 136
+ C+ M KR+ +V F + SV+K L H +D TI +A +
Sbjct: 26 RECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQPHHELDSKTIDPKVAFPRRAQPKMVT 85
Query: 137 NSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEE 191
+ IF+G + E++++ FE G++++ L+ D+ TN +GFG+V F++E+
Sbjct: 86 RTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFESED 140
Score = 43.1 bits (100), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 31/137 (22%), Positives = 55/137 (40%), Gaps = 50/137 (36%)
Query: 141 IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF------------- 187
+FIG + ++ + LR F GEI ++RD T +GFG+V F
Sbjct: 1 MFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQP 60
Query: 188 -----------------KAEE--------------------EELRKAFESCGEIDNVRLI 210
+A+ E++++ FE G++++ L+
Sbjct: 61 HHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLM 120
Query: 211 RDQHTNIGKGFGYVNFK 227
D+ TN +GFG+V F+
Sbjct: 121 FDKTTNRHRGFGFVTFE 137
>gi|395834193|ref|XP_003790096.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D0 isoform 2
[Otolemur garnettii]
Length = 355
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 60/111 (54%), Gaps = 10/111 (9%)
Query: 94 RTNMNAYVRFKNLESVEKALE-----MNGHVIDEHTIRVDKALTTTKSNSHSIFIGNIPF 148
R+ +V FK ESV+K ++ +NG VID + K TK IF+G +
Sbjct: 136 RSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMK----TKEPVKKIFVGGLSP 191
Query: 149 EAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
+ EE++R+ F GE++++ L D TN +GF ++ FK EEE ++K E
Sbjct: 192 DTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFK-EEEPVKKIME 241
Score = 38.5 bits (88), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 31/142 (21%), Positives = 54/142 (38%), Gaps = 46/142 (32%)
Query: 132 TTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK--- 188
T + +FIG + ++ +++L+ F GE+ + L D T +GFG+V FK
Sbjct: 90 ATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESE 149
Query: 189 -------------------------------------------AEEEELRKAFESCGEID 205
EE++R+ F GE++
Sbjct: 150 SVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVE 209
Query: 206 NVRLIRDQHTNIGKGFGYVNFK 227
++ L D TN +GF ++ FK
Sbjct: 210 SIELPMDNKTNKRRGFCFITFK 231
>gi|2773158|gb|AAB96683.1| heterogeneous nuclear ribonucleoprotein D0B [Homo sapiens]
Length = 298
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 60/111 (54%), Gaps = 10/111 (9%)
Query: 94 RTNMNAYVRFKNLESVEKALE-----MNGHVIDEHTIRVDKALTTTKSNSHSIFIGNIPF 148
R+ +V FK ESV+K ++ +NG VID + K TK IF+G +
Sbjct: 128 RSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMK----TKEPVKKIFVGGLSP 183
Query: 149 EAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
+ EE++R+ F GE++++ L D TN +GF ++ FK EEE ++K E
Sbjct: 184 DTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFK-EEEPVKKIME 233
Score = 37.7 bits (86), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 31/142 (21%), Positives = 54/142 (38%), Gaps = 46/142 (32%)
Query: 132 TTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK--- 188
T + +FIG + ++ +++L+ F GE+ + L D T +GFG+V FK
Sbjct: 82 ATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESE 141
Query: 189 -------------------------------------------AEEEELRKAFESCGEID 205
EE++R+ F GE++
Sbjct: 142 SVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVE 201
Query: 206 NVRLIRDQHTNIGKGFGYVNFK 227
++ L D TN +GF ++ FK
Sbjct: 202 SIELPMDNKTNKRRGFCFITFK 223
>gi|390359470|ref|XP_782936.3| PREDICTED: nucleolysin TIAR-like [Strongylocentrotus purpuratus]
Length = 430
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 63/116 (54%), Gaps = 7/116 (6%)
Query: 82 KACIKMNKVHEKRTNMNAYVRFKNLESVEKAL-EMNGHVIDEHTIRVDKALTTTK----S 136
K+C KM H ++ +V F + + E A+ MNG + + I+V+ A T +
Sbjct: 54 KSC-KMIADH-GNSDPYCFVEFYDSVTAEAAMVAMNGRTVFDKPIKVNWATTQGSRKDTT 111
Query: 137 NSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEE 192
+ H +F+G++ E + ELR F+ G I + R++RD T + +G+V+F+ EE+
Sbjct: 112 HHHHVFVGDLVQEMKTAELRALFDKYGSITDARVVRDPETGKSRCYGFVSFEQEED 167
>gi|342887855|gb|EGU87283.1| hypothetical protein FOXB_02159 [Fusarium oxysporum Fo5176]
Length = 505
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 64/136 (47%), Gaps = 24/136 (17%)
Query: 99 AYVRFKNLESVEKALE-MNGHVIDEHTIRVDKA--------------------LTTTKSN 137
YV F + S KA E M G ++ I +D A T
Sbjct: 295 GYVDFNDAASCTKAYETMQGVELEGRAINLDYANARPADANPQSRAADRAQRHGDTVSPE 354
Query: 138 SHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKA 197
S ++F+GN+PF+ +++ +R+ F E+ +VRL D + KGFGYV+F + E+ ++
Sbjct: 355 SDTLFVGNLPFDVDQDTVREFFSEVAEVASVRLPTDPDSGNLKGFGYVSFNS-VEDAKQV 413
Query: 198 FES--CGEIDNVRLIR 211
FE+ I N R+ R
Sbjct: 414 FEAKNGAPIGNGRMSR 429
>gi|387018108|gb|AFJ51172.1| Heterogeneous nuclear ribonucleoprotein A3-like [Crotalus
adamanteus]
Length = 225
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 55/111 (49%), Gaps = 7/111 (6%)
Query: 84 CIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALT---TTKSNSH- 139
C+ M KR+ +V + +E V+ A+ H +D + +A++ + K +H
Sbjct: 42 CVVMRDPQTKRSRGFGFVTYSCVEEVDAAMSARPHKVDGRVVEPKRAVSREDSVKPGAHL 101
Query: 140 ---SIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 187
IF+G I + EE LR FE G+I+ + ++ D+ + +GF +V F
Sbjct: 102 TVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTF 152
Score = 45.1 bits (105), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 30/138 (21%), Positives = 51/138 (36%), Gaps = 52/138 (37%)
Query: 141 IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKA----------- 189
+FIG + FE ++ LR+ FE G + + ++RD T +GFG+V +
Sbjct: 15 LFIGGLSFETTDDSLREHFEKWGALTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMSAR 74
Query: 190 -----------------------------------------EEEELRKAFESCGEIDNVR 208
EE LR FE G+I+ +
Sbjct: 75 PHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIE 134
Query: 209 LIRDQHTNIGKGFGYVNF 226
++ D+ + +GF +V F
Sbjct: 135 VMEDRQSGKKRGFAFVTF 152
>gi|443921112|gb|ELU40879.1| splicing factor, CC1-like family protein [Rhizoctonia solani AG-1
IA]
Length = 399
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 71/160 (44%), Gaps = 29/160 (18%)
Query: 93 KRTNMNAYVRFKNLESVEKALEMNGHVI------------------DEHTIRVDKALTTT 134
+R+ YV FKN++ V KA+ ++G ++ ++ + ++
Sbjct: 106 RRSKGIGYVEFKNIDLVNKAIALSGTIVMGLPIMIQLTESERNKIGPSSSLHLPPGVSHP 165
Query: 135 KSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEE-- 192
+ S +++G++ F E ++R+ FE GE+D V L RD T KG+ ++ +K E+
Sbjct: 166 HAGSMQLYVGSLHFNLTESDIRQVFEPFGELDFVDLHRDPATGKSKGYCFIQYKRPEDAR 225
Query: 193 ---ELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKVS 229
E + FE G V + D KG G V +
Sbjct: 226 MALEQMEGFELAGRQLRVNTVHD------KGQGTVRISTA 259
>gi|194862772|ref|XP_001970115.1| GG10454 [Drosophila erecta]
gi|190661982|gb|EDV59174.1| GG10454 [Drosophila erecta]
Length = 593
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 62/115 (53%), Gaps = 15/115 (13%)
Query: 99 AYVRFKNLESVEKALEMNGH------VIDEHTI----RVDKALTTTKSNSHS----IFIG 144
AY+ F++ ESV AL ++G ++ +HT R+ A + SH+ +++G
Sbjct: 280 AYIEFEDPESVALALGLSGQRLLGVPIMVQHTQAEKNRLQNAAPAFQPKSHTGPMRLYVG 339
Query: 145 NIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
++ F E+ LR FE G+ID ++LI D T KG+G++ + ++ +KA E
Sbjct: 340 SLHFNITEDMLRGIFEPFGKIDAIQLIMDTETGRSKGYGFITYH-NADDAKKALE 393
>gi|402079107|gb|EJT74372.1| nuclear and cytoplasmic polyadenylated RNA-binding protein pub1
[Gaeumannomyces graminis var. tritici R3-111a-1]
Length = 482
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 64/122 (52%), Gaps = 10/122 (8%)
Query: 99 AYVRFKNLESVEKALE-MNGHVIDEHTIRVDKAL----TTTK---SNSHSIFIGNIPFEA 150
+V + + + ++A++ +NG + + IRV+ A TTTK SN IF+G++ E
Sbjct: 130 GFVEYDDPGAADRAMQTLNGRRVHQSEIRVNWAYQSANTTTKEDTSNHFHIFVGDLSNEV 189
Query: 151 EEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESC-GEIDNVRL 209
+E L +AF G + R++ D T +G+G+V F+ + + KA S GE R
Sbjct: 190 NDEVLTQAFSVFGSVSEARVMWDMKTGRSRGYGFVAFR-DRPDAEKALSSMDGEWLGSRA 248
Query: 210 IR 211
IR
Sbjct: 249 IR 250
Score = 37.4 bits (85), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
Query: 132 TTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGY 184
T + N ++++G + E+ LR+ FE+ G + NV++I D++ KGF Y
Sbjct: 80 TAPEPNKRALYVGGLDARVTEDVLRQIFETTGHVQNVKIIPDKNA---KGFNY 129
>gi|338718482|ref|XP_001499079.3| PREDICTED: hypothetical protein LOC100069254 [Equus caballus]
Length = 455
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 56/106 (52%), Gaps = 1/106 (0%)
Query: 94 RTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKSNSHSIFIGNIPFEAEEE 153
R+ ++ FK++ SVEK L+ + H + KA+T K IF+G + EA EE
Sbjct: 98 RSRGLGFILFKDVASVEKVLDQKERKVGGHRMNHKKAVTMKKDPMKKIFVGGLNPEATEE 157
Query: 154 ELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
++R+ F GEI+ + D +N +G ++ FK EEE +R E
Sbjct: 158 KIREYFGKFGEIEAIEFSLDPESNKRQGSVFIAFK-EEEPVRSILE 202
>gi|71896513|ref|NP_001025523.1| heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA
binding protein 1, 37kDa) [Xenopus (Silurana)
tropicalis]
gi|52355236|gb|AAU44811.1| AUF1 [Xenopus (Silurana) tropicalis]
Length = 295
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 59/111 (53%), Gaps = 10/111 (9%)
Query: 94 RTNMNAYVRFKNLESVEKALE-----MNGHVIDEHTIRVDKALTTTKSNSHSIFIGNIPF 148
R+ +V FK E V+K +E +NG VID + K TK IF+G +
Sbjct: 77 RSRGFGFVLFKESEGVDKVMEQKEHKLNGKVIDPKRAKAMK----TKEPVKKIFVGGLSP 132
Query: 149 EAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
+ EE++R+ F + GEI+ + L D TN +GF ++ FK EE+ ++K E
Sbjct: 133 DTPEEKIREYFGTFGEIEAIELPMDNKTNKRRGFCFITFK-EEDPVKKIME 182
Score = 40.0 bits (92), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 33/149 (22%), Positives = 60/149 (40%), Gaps = 48/149 (32%)
Query: 125 IRVDKALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGY 184
+++D + T+ + +FIG + ++ +++L+ F GE+ + L D T +GFG+
Sbjct: 26 VKID--ASKTEEDEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGF 83
Query: 185 VNFK----------------------------------------------AEEEELRKAF 198
V FK EE++R+ F
Sbjct: 84 VLFKESEGVDKVMEQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYF 143
Query: 199 ESCGEIDNVRLIRDQHTNIGKGFGYVNFK 227
+ GEI+ + L D TN +GF ++ FK
Sbjct: 144 GTFGEIEAIELPMDNKTNKRRGFCFITFK 172
>gi|9588100|dbj|BAB03467.1| RNA binding protein p40 AUF1 [Rattus norvegicus]
Length = 304
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 60/111 (54%), Gaps = 10/111 (9%)
Query: 94 RTNMNAYVRFKNLESVEKALE-----MNGHVIDEHTIRVDKALTTTKSNSHSIFIGNIPF 148
R+ +V FK ESV+K ++ +NG VID + K TK IF+G +
Sbjct: 134 RSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMK----TKEPVKKIFVGGLSP 189
Query: 149 EAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
+ EE++R+ F GE++++ L D TN +GF ++ FK EEE ++K E
Sbjct: 190 DTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFK-EEEPVKKIME 239
Score = 36.6 bits (83), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 30/142 (21%), Positives = 54/142 (38%), Gaps = 46/142 (32%)
Query: 132 TTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK--- 188
T + +FIG + ++ +++L+ F G++ + L D T +GFG+V FK
Sbjct: 88 ATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESE 147
Query: 189 -------------------------------------------AEEEELRKAFESCGEID 205
EE++R+ F GE++
Sbjct: 148 SVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVE 207
Query: 206 NVRLIRDQHTNIGKGFGYVNFK 227
++ L D TN +GF ++ FK
Sbjct: 208 SIELPMDNKTNKRRGFCFITFK 229
>gi|403263352|ref|XP_003924001.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D0 isoform 2
[Saimiri boliviensis boliviensis]
Length = 355
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 60/111 (54%), Gaps = 10/111 (9%)
Query: 94 RTNMNAYVRFKNLESVEKALE-----MNGHVIDEHTIRVDKALTTTKSNSHSIFIGNIPF 148
R+ +V FK ESV+K ++ +NG VID + K TK IF+G +
Sbjct: 136 RSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMK----TKEPVKKIFVGGLSP 191
Query: 149 EAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
+ EE++R+ F GE++++ L D TN +GF ++ FK EEE ++K E
Sbjct: 192 DTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFK-EEEPVKKIME 241
Score = 38.5 bits (88), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 31/142 (21%), Positives = 54/142 (38%), Gaps = 46/142 (32%)
Query: 132 TTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK--- 188
T + +FIG + ++ +++L+ F GE+ + L D T +GFG+V FK
Sbjct: 90 ATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESE 149
Query: 189 -------------------------------------------AEEEELRKAFESCGEID 205
EE++R+ F GE++
Sbjct: 150 SVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVE 209
Query: 206 NVRLIRDQHTNIGKGFGYVNFK 227
++ L D TN +GF ++ FK
Sbjct: 210 SIELPMDNKTNKRRGFCFITFK 231
>gi|357612395|gb|EHJ67964.1| putative RNA-binding region-containing protein [Danaus plexippus]
Length = 536
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 59/115 (51%), Gaps = 15/115 (13%)
Query: 99 AYVRFKNLESVEKALEMNGH------VIDEHTI----RVDKALTT----TKSNSHSIFIG 144
AY+ FK+ ESV AL + G +I +HT RV L T + +++G
Sbjct: 226 AYIEFKDAESVPLALGLTGQKLLGVPIIVQHTQAEKNRVGNTLPNLAPKTSNGPTRLYVG 285
Query: 145 NIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
++ F E+ LR FE G+ID+++L+ D T KG+G++ F + +KA E
Sbjct: 286 SLHFNITEDMLRGIFEPFGKIDHIQLMTDPDTGKSKGYGFLTFH-HATDAKKAME 339
Score = 40.4 bits (93), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 28/44 (63%)
Query: 183 GYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 226
G ++F E+ LR FE G+ID+++L+ D T KG+G++ F
Sbjct: 285 GSLHFNITEDMLRGIFEPFGKIDHIQLMTDPDTGKSKGYGFLTF 328
>gi|317419099|emb|CBN81137.1| RNA-binding protein Musashi homolog 1 [Dicentrarchus labrax]
Length = 362
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 56/118 (47%), Gaps = 11/118 (9%)
Query: 82 KACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTI--------RVDKALTT 133
K C+ M KR+ +V + VEK L N H +D TI R L T
Sbjct: 49 KECMVMRDPVTKRSRGFGFVTYAEQAGVEKVLAQNRHELDSKTIDPKVAFPRRAQPKLVT 108
Query: 134 TKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEE 191
+ IF+G + E+++ F+ G++D+ L+ D+ TN +GFG+V F+ E+
Sbjct: 109 ---RTKKIFVGGLSVNTTIEDVKHYFDQFGKVDDAMLMFDKTTNRHRGFGFVTFENED 163
Score = 42.0 bits (97), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 28/137 (20%), Positives = 54/137 (39%), Gaps = 50/137 (36%)
Query: 141 IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEE--------- 191
+FIG + ++ +E L++ F GE+ ++RD T +GFG+V + +
Sbjct: 24 MFIGGLSWQTTQEGLKEYFCKFGEVKECMVMRDPVTKRSRGFGFVTYAEQAGVEKVLAQN 83
Query: 192 -----------------------------------------EELRKAFESCGEIDNVRLI 210
E+++ F+ G++D+ L+
Sbjct: 84 RHELDSKTIDPKVAFPRRAQPKLVTRTKKIFVGGLSVNTTIEDVKHYFDQFGKVDDAMLM 143
Query: 211 RDQHTNIGKGFGYVNFK 227
D+ TN +GFG+V F+
Sbjct: 144 FDKTTNRHRGFGFVTFE 160
>gi|158563873|sp|Q5B630.2|PABP_EMENI RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|259481418|tpe|CBF74916.1| TPA: Polyadenylate-binding protein, cytoplasmic and nuclear
(Poly(A)-binding protein)(PABP)(Polyadenylate
tail-binding protein)
[Source:UniProtKB/Swiss-Prot;Acc:Q5B630] [Aspergillus
nidulans FGSC A4]
Length = 732
Score = 55.8 bits (133), Expect = 1e-05, Method: Composition-based stats.
Identities = 38/132 (28%), Positives = 65/132 (49%), Gaps = 16/132 (12%)
Query: 99 AYVRFKNLESVEKALE-MNGHVIDEHTIRVDKALTTT---------KSNSHSIFIGNIPF 148
+V ++ E+ A++ +NG ++++ + V ++ K+N +I+I NI
Sbjct: 173 GFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNIYIKNIDP 232
Query: 149 EAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVR 208
E E+EE RK FE GEI + L RD +GFG+VNF E ++ E N +
Sbjct: 233 EVEDEEFRKLFEKFGEITSATLSRDSEGK-SRGFGFVNFSTHESA-----QAAVEEMNDK 286
Query: 209 LIRDQHTNIGKG 220
+R Q +G+
Sbjct: 287 EVRSQKLYVGRA 298
Score = 41.6 bits (96), Expect = 0.26, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 35/61 (57%)
Query: 127 VDKALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVN 186
V+ TT++ +S S+++G + E L + F S G++ ++R+ RD T G+ YVN
Sbjct: 30 VEAPATTSQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVN 89
Query: 187 F 187
+
Sbjct: 90 Y 90
>gi|127139089|ref|NP_001076008.1| heterogeneous nuclear ribonucleoprotein D0 isoform b [Rattus
norvegicus]
gi|149046818|gb|EDL99592.1| heterogeneous nuclear ribonucleoprotein D, isoform CRA_c [Rattus
norvegicus]
gi|149046819|gb|EDL99593.1| heterogeneous nuclear ribonucleoprotein D, isoform CRA_c [Rattus
norvegicus]
Length = 334
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 60/111 (54%), Gaps = 10/111 (9%)
Query: 94 RTNMNAYVRFKNLESVEKALE-----MNGHVIDEHTIRVDKALTTTKSNSHSIFIGNIPF 148
R+ +V FK ESV+K ++ +NG VID + K TK IF+G +
Sbjct: 115 RSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMK----TKEPVKKIFVGGLSP 170
Query: 149 EAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
+ EE++R+ F GE++++ L D TN +GF ++ FK EEE ++K E
Sbjct: 171 DTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFK-EEEPVKKIME 220
>gi|395834191|ref|XP_003790095.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D0 isoform 1
[Otolemur garnettii]
Length = 306
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 60/111 (54%), Gaps = 10/111 (9%)
Query: 94 RTNMNAYVRFKNLESVEKALE-----MNGHVIDEHTIRVDKALTTTKSNSHSIFIGNIPF 148
R+ +V FK ESV+K ++ +NG VID + K TK IF+G +
Sbjct: 136 RSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMK----TKEPVKKIFVGGLSP 191
Query: 149 EAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
+ EE++R+ F GE++++ L D TN +GF ++ FK EEE ++K E
Sbjct: 192 DTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFK-EEEPVKKIME 241
Score = 37.7 bits (86), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 31/142 (21%), Positives = 54/142 (38%), Gaps = 46/142 (32%)
Query: 132 TTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK--- 188
T + +FIG + ++ +++L+ F GE+ + L D T +GFG+V FK
Sbjct: 90 ATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESE 149
Query: 189 -------------------------------------------AEEEELRKAFESCGEID 205
EE++R+ F GE++
Sbjct: 150 SVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVE 209
Query: 206 NVRLIRDQHTNIGKGFGYVNFK 227
++ L D TN +GF ++ FK
Sbjct: 210 SIELPMDNKTNKRRGFCFITFK 231
>gi|225683278|gb|EEH21562.1| nuclear localization sequence-binding protein [Paracoccidioides
brasiliensis Pb03]
Length = 492
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Query: 121 DEHTIRVDKALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGK 180
DE + K + ++FIGN+ + +EE LR FE GE+ VR++ D+ + K
Sbjct: 229 DEEEVVAPKKTKVEPTEGGNLFIGNLSWNVDEEWLRSEFEEFGELAGVRIVTDRDSGRSK 288
Query: 181 GFGYVNFKAEEEELRK-AFESCGEIDNVRL 209
GFGYV F E+ ++ A + E+D +L
Sbjct: 289 GFGYVEFTNAEDAVKAHAAKKDTELDGRKL 318
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 59/127 (46%), Gaps = 21/127 (16%)
Query: 94 RTNMNAYVRFKNLESVEKA------LEMNGHVID-------EHTIRVDKALTTTKS---- 136
R+ YV F N E KA E++G ++ + D+A + ++
Sbjct: 286 RSKGFGYVEFTNAEDAVKAHAAKKDTELDGRKLNVDFANARSNAAPRDRAQSRAQNFGDQ 345
Query: 137 ---NSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEE 193
S ++FIGNI F A+E + + F G I VRL D + KGFGYV F + +E
Sbjct: 346 RSPESDTLFIGNIAFSADENMISETFAEYGSILGVRLPTDPESGRPKGFGYVQF-SSIDE 404
Query: 194 LRKAFES 200
R AFES
Sbjct: 405 ARSAFES 411
Score = 44.7 bits (104), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 28/44 (63%)
Query: 183 GYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 226
G +++ +EE LR FE GE+ VR++ D+ + KGFGYV F
Sbjct: 252 GNLSWNVDEEWLRSEFEEFGELAGVRIVTDRDSGRSKGFGYVEF 295
>gi|187607268|ref|NP_001120028.1| heterogeneous nuclear ribonucleoprotein A3 [Xenopus (Silurana)
tropicalis]
gi|165971520|gb|AAI58334.1| LOC100144993 protein [Xenopus (Silurana) tropicalis]
gi|170284841|gb|AAI61197.1| LOC100144993 protein [Xenopus (Silurana) tropicalis]
Length = 383
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 56/111 (50%), Gaps = 7/111 (6%)
Query: 84 CIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALT---TTKSNSH- 139
C+ M KR+ +V + +E V+ A+ H +D + +A++ + + +H
Sbjct: 56 CVVMRDPQTKRSRGFGFVTYSCVEEVDAAMSARPHKVDGRVVEPKRAVSREDSARPGAHL 115
Query: 140 ---SIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 187
IF+G I + EE LR F+S G+I+ + ++ D+ + +GF +V F
Sbjct: 116 TVKKIFVGGIKEDTEEYHLRDYFQSYGKIETIEVMEDRQSGKKRGFAFVTF 166
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 34/162 (20%), Positives = 59/162 (36%), Gaps = 54/162 (33%)
Query: 119 VIDEHTIRVDKALTTTKSNSH--SIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHT 176
+D+H D K +FIG + FE ++ LR+ FE G++ + ++RD T
Sbjct: 5 AMDDHWPSTDDQGHEPKEPEQLRKLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQT 64
Query: 177 NIGKGFGYVNFKA----------------------------------------------- 189
+GFG+V +
Sbjct: 65 KRSRGFGFVTYSCVEEVDAAMSARPHKVDGRVVEPKRAVSREDSARPGAHLTVKKIFVGG 124
Query: 190 -----EEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 226
EE LR F+S G+I+ + ++ D+ + +GF +V F
Sbjct: 125 IKEDTEEYHLRDYFQSYGKIETIEVMEDRQSGKKRGFAFVTF 166
>gi|116256512|ref|NP_001070733.1| heterogeneous nuclear ribonucleoprotein D0 isoform a [Mus musculus]
gi|33516945|sp|Q60668.2|HNRPD_MOUSE RecName: Full=Heterogeneous nuclear ribonucleoprotein D0;
Short=hnRNP D0; AltName: Full=AU-rich element
RNA-binding protein 1
gi|148688367|gb|EDL20314.1| heterogeneous nuclear ribonucleoprotein D, isoform CRA_d [Mus
musculus]
Length = 355
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 60/111 (54%), Gaps = 10/111 (9%)
Query: 94 RTNMNAYVRFKNLESVEKALE-----MNGHVIDEHTIRVDKALTTTKSNSHSIFIGNIPF 148
R+ +V FK ESV+K ++ +NG VID + K TK IF+G +
Sbjct: 136 RSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMK----TKEPVKKIFVGGLSP 191
Query: 149 EAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
+ EE++R+ F GE++++ L D TN +GF ++ FK EEE ++K E
Sbjct: 192 DTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFK-EEEPVKKIME 241
Score = 37.7 bits (86), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 30/133 (22%), Positives = 52/133 (39%), Gaps = 46/133 (34%)
Query: 141 IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK------------ 188
+FIG + ++ +++L+ F GE+ + L D T +GFG+V FK
Sbjct: 99 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 158
Query: 189 ----------------------------------AEEEELRKAFESCGEIDNVRLIRDQH 214
EE++R+ F GE++++ L D
Sbjct: 159 EHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNK 218
Query: 215 TNIGKGFGYVNFK 227
TN +GF ++ FK
Sbjct: 219 TNKRRGFCFITFK 231
>gi|355765936|gb|EHH62474.1| Heterogeneous nuclear ribonucleoprotein D0, partial [Macaca
fascicularis]
Length = 302
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 60/111 (54%), Gaps = 10/111 (9%)
Query: 94 RTNMNAYVRFKNLESVEKALE-----MNGHVIDEHTIRVDKALTTTKSNSHSIFIGNIPF 148
R+ +V FK ESV+K ++ +NG VID + K TK IF+G +
Sbjct: 83 RSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMK----TKEPVKKIFVGGLSP 138
Query: 149 EAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
+ EE++R+ F GE++++ L D TN +GF ++ FK EEE ++K E
Sbjct: 139 DTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFK-EEEPVKKIME 188
Score = 37.7 bits (86), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 31/142 (21%), Positives = 54/142 (38%), Gaps = 46/142 (32%)
Query: 132 TTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK--- 188
T + +FIG + ++ +++L+ F GE+ + L D T +GFG+V FK
Sbjct: 37 ATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESE 96
Query: 189 -------------------------------------------AEEEELRKAFESCGEID 205
EE++R+ F GE++
Sbjct: 97 SVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVE 156
Query: 206 NVRLIRDQHTNIGKGFGYVNFK 227
++ L D TN +GF ++ FK
Sbjct: 157 SIELPMDNKTNKRRGFCFITFK 178
>gi|440635199|gb|ELR05118.1| hypothetical protein GMDG_07160 [Geomyces destructans 20631-21]
Length = 318
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 35/56 (62%)
Query: 133 TTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK 188
+TK S S+F+GNIP+ EE++ F S G++ N RL+ D+ T KGFG+ +
Sbjct: 2 STKPPSKSVFVGNIPYGLTEEQIIDIFSSAGKVVNFRLVYDRETGRPKGFGFAEYP 57
Score = 39.7 bits (91), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 30/54 (55%)
Query: 183 GYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKVSFTTLSSI 236
G + + EE++ F S G++ N RL+ D+ T KGFG+ + S + S++
Sbjct: 13 GNIPYGLTEEQIIDIFSSAGKVVNFRLVYDRETGRPKGFGFAEYPDSDSAASAV 66
>gi|345497985|ref|XP_001603213.2| PREDICTED: nucleolysin TIA-1 isoform p40-like [Nasonia vitripennis]
Length = 386
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 45/79 (56%), Gaps = 4/79 (5%)
Query: 135 KSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF--KAEEE 192
KS + IF+G++ E E + LR+AF GEI + R++RD T KG+G+V+F KAE E
Sbjct: 56 KSEHYHIFVGDLSPEIETQTLREAFAPFGEISDCRVVRDPQTMKSKGYGFVSFVKKAEAE 115
Query: 193 ELRKAFESCGEIDNVRLIR 211
A G+ R IR
Sbjct: 116 SAIGAMN--GQWLGSRSIR 132
Score = 42.4 bits (98), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 25/37 (67%)
Query: 190 EEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 226
E + LR+AF GEI + R++RD T KG+G+V+F
Sbjct: 72 ETQTLREAFAPFGEISDCRVVRDPQTMKSKGYGFVSF 108
>gi|74001715|ref|XP_857957.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D0 isoform 11
[Canis lupus familiaris]
Length = 355
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 60/111 (54%), Gaps = 10/111 (9%)
Query: 94 RTNMNAYVRFKNLESVEKALE-----MNGHVIDEHTIRVDKALTTTKSNSHSIFIGNIPF 148
R+ +V FK ESV+K ++ +NG VID + K TK IF+G +
Sbjct: 136 RSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMK----TKEPVKKIFVGGLSP 191
Query: 149 EAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
+ EE++R+ F GE++++ L D TN +GF ++ FK EEE ++K E
Sbjct: 192 DTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFK-EEEPVKKIME 241
Score = 38.5 bits (88), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 31/142 (21%), Positives = 54/142 (38%), Gaps = 46/142 (32%)
Query: 132 TTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK--- 188
T + +FIG + ++ +++L+ F GE+ + L D T +GFG+V FK
Sbjct: 90 ATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESE 149
Query: 189 -------------------------------------------AEEEELRKAFESCGEID 205
EE++R+ F GE++
Sbjct: 150 SVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVE 209
Query: 206 NVRLIRDQHTNIGKGFGYVNFK 227
++ L D TN +GF ++ FK
Sbjct: 210 SIELPMDNKTNKRRGFCFITFK 231
>gi|389629168|ref|XP_003712237.1| polyadenylate-binding protein [Magnaporthe oryzae 70-15]
gi|158514092|sp|A4QUF0.1|PABP_MAGO7 RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|351644569|gb|EHA52430.1| polyadenylate-binding protein [Magnaporthe oryzae 70-15]
gi|440469069|gb|ELQ38192.1| polyadenylate-binding protein [Magnaporthe oryzae Y34]
gi|440487573|gb|ELQ67355.1| polyadenylate-binding protein [Magnaporthe oryzae P131]
Length = 762
Score = 55.8 bits (133), Expect = 1e-05, Method: Composition-based stats.
Identities = 30/104 (28%), Positives = 55/104 (52%), Gaps = 10/104 (9%)
Query: 99 AYVRFKNLESVEKALE-MNGHVIDEHTIRV---------DKALTTTKSNSHSIFIGNIPF 148
+V ++ E+ +A++ +NG +++E + V K+N +I++ NI
Sbjct: 192 GFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFDEMKANFTNIYVKNINP 251
Query: 149 EAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEE 192
E ++E R FE G++ + L RDQ T +GFG+VNF + E+
Sbjct: 252 EVTDDEFRTLFEKYGDVTSSSLARDQETGKSRGFGFVNFTSHED 295
Score = 41.6 bits (96), Expect = 0.30, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 26/42 (61%)
Query: 185 VNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 226
+N + ++E R FE G++ + L RDQ T +GFG+VNF
Sbjct: 249 INPEVTDDEFRTLFEKYGDVTSSSLARDQETGKSRGFGFVNF 290
>gi|332233349|ref|XP_003265864.1| PREDICTED: LOW QUALITY PROTEIN: heterogeneous nuclear
ribonucleoprotein D0 [Nomascus leucogenys]
Length = 355
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 60/111 (54%), Gaps = 10/111 (9%)
Query: 94 RTNMNAYVRFKNLESVEKALE-----MNGHVIDEHTIRVDKALTTTKSNSHSIFIGNIPF 148
R+ +V FK ESV+K ++ +NG VID + K TK IF+G +
Sbjct: 136 RSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMK----TKEPVKKIFVGGLSP 191
Query: 149 EAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
+ EE++R+ F GE++++ L D TN +GF ++ FK EEE ++K E
Sbjct: 192 DTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFK-EEEPVKKIME 241
Score = 38.5 bits (88), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 31/142 (21%), Positives = 54/142 (38%), Gaps = 46/142 (32%)
Query: 132 TTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK--- 188
T + +FIG + ++ +++L+ F GE+ + L D T +GFG+V FK
Sbjct: 90 ATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESE 149
Query: 189 -------------------------------------------AEEEELRKAFESCGEID 205
EE++R+ F GE++
Sbjct: 150 SVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVE 209
Query: 206 NVRLIRDQHTNIGKGFGYVNFK 227
++ L D TN +GF ++ FK
Sbjct: 210 SIELPMDNKTNKRRGFCFITFK 231
>gi|116256514|ref|NP_031542.2| heterogeneous nuclear ribonucleoprotein D0 isoform c [Mus musculus]
gi|29145079|gb|AAH49098.1| Heterogeneous nuclear ribonucleoprotein D [Mus musculus]
gi|148688366|gb|EDL20313.1| heterogeneous nuclear ribonucleoprotein D, isoform CRA_c [Mus
musculus]
Length = 306
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 60/111 (54%), Gaps = 10/111 (9%)
Query: 94 RTNMNAYVRFKNLESVEKALE-----MNGHVIDEHTIRVDKALTTTKSNSHSIFIGNIPF 148
R+ +V FK ESV+K ++ +NG VID + K TK IF+G +
Sbjct: 136 RSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMK----TKEPVKKIFVGGLSP 191
Query: 149 EAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
+ EE++R+ F GE++++ L D TN +GF ++ FK EEE ++K E
Sbjct: 192 DTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFK-EEEPVKKIME 241
Score = 37.0 bits (84), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 30/133 (22%), Positives = 52/133 (39%), Gaps = 46/133 (34%)
Query: 141 IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK------------ 188
+FIG + ++ +++L+ F GE+ + L D T +GFG+V FK
Sbjct: 99 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 158
Query: 189 ----------------------------------AEEEELRKAFESCGEIDNVRLIRDQH 214
EE++R+ F GE++++ L D
Sbjct: 159 EHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNK 218
Query: 215 TNIGKGFGYVNFK 227
TN +GF ++ FK
Sbjct: 219 TNKRRGFCFITFK 231
>gi|632500|gb|AAB50269.1| polyadenylation factor 64 kDa subunit [Xenopus laevis]
Length = 497
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 41/68 (60%), Gaps = 7/68 (10%)
Query: 127 VDKALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVN 186
VD++L S+F+GNIP+EA EE+L+ F G + + RL+ D+ T KG+G+
Sbjct: 11 VDRSL-------RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCE 63
Query: 187 FKAEEEEL 194
++ +E L
Sbjct: 64 YQDQETAL 71
Score = 42.0 bits (97), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 32/55 (58%)
Query: 182 FGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKVSFTTLSSI 236
G + ++A EE+L+ F G + + RL+ D+ T KG+G+ ++ T LS++
Sbjct: 20 VGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAM 74
>gi|297829856|ref|XP_002882810.1| RNA recognition motif-containing protein [Arabidopsis lyrata subsp.
lyrata]
gi|297328650|gb|EFH59069.1| RNA recognition motif-containing protein [Arabidopsis lyrata subsp.
lyrata]
Length = 231
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 55/115 (47%), Gaps = 8/115 (6%)
Query: 84 CIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKSNSHS--- 140
+ M H + ++ F + V+K +E N H+I+ + + + + + S
Sbjct: 48 SVIMRDRHTGQPRGFGFITFADPSVVDKVIEDN-HIINGKQVEIKRTIPKGAGGNQSKDF 106
Query: 141 ----IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEE 191
IF+G IP E+EL+ F G + ++IRD TN +GFG+V F +EE
Sbjct: 107 KTKKIFVGGIPSTVTEDELKDFFSKYGNVVEHQVIRDHETNRSRGFGFVIFDSEE 161
Score = 41.2 bits (95), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 34/152 (22%), Positives = 53/152 (34%), Gaps = 51/152 (33%)
Query: 126 RVDKALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYV 185
R D + ++ IFIG + + K F GEI + ++RD+HT +GFG++
Sbjct: 6 RNDNFQSGDGASPGKIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFI 65
Query: 186 NFK---------------------------------------------------AEEEEL 194
F E+EL
Sbjct: 66 TFADPSVVDKVIEDNHIINGKQVEIKRTIPKGAGGNQSKDFKTKKIFVGGIPSTVTEDEL 125
Query: 195 RKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 226
+ F G + ++IRD TN +GFG+V F
Sbjct: 126 KDFFSKYGNVVEHQVIRDHETNRSRGFGFVIF 157
>gi|116788830|gb|ABK25016.1| unknown [Picea sitchensis]
Length = 290
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 57/104 (54%), Gaps = 10/104 (9%)
Query: 99 AYVRFKNLESVEKALEM-NGHVIDEHTIRVDKAL---------TTTKSNSHSIFIGNIPF 148
+V +E EK +E+ N H ++ + V+KA + S+++ I++GN+P+
Sbjct: 157 GFVTMGTVEEAEKGVELFNRHSLEGRLLTVNKAAPRGTKVERPSQAGSSTNKIYVGNLPW 216
Query: 149 EAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEE 192
+A++ L + F G++ R++ D+ T +GFG+V + +E E
Sbjct: 217 QADDNSLLQLFSEHGKVLEARVVYDRETGRSRGFGFVTYSSESE 260
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 33/52 (63%)
Query: 141 IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEE 192
+F+GN+PF + ++L + FE GE+ +V +I D+ T +GFG+V EE
Sbjct: 115 LFVGNLPFNLDNQQLGELFEGAGEVLDVNIITDRETGNSRGFGFVTMGTVEE 166
>gi|119923161|ref|XP_001251082.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A1-like 2
isoform 2 [Bos taurus]
gi|297471765|ref|XP_002685448.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A1-like 2 [Bos
taurus]
gi|296490543|tpg|DAA32656.1| TPA: heterogeneous nuclear ribonucleoprotein A1-like [Bos taurus]
Length = 320
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 56/111 (50%), Gaps = 7/111 (6%)
Query: 84 CIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALT---TTKSNSH- 139
C+ M + KR+ +V + +E V+ A+ H +D + +A++ + + +H
Sbjct: 43 CVVMRDPNTKRSRGFGFVTYTTVEEVDAAMNARPHKVDGRAVEPKRAVSREDSQRPGAHL 102
Query: 140 ---SIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 187
IF+G I + EE LR FE G+I+ + ++ DQ + +GF +V F
Sbjct: 103 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDQGSGKKRGFAFVTF 153
Score = 43.5 bits (101), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 32/138 (23%), Positives = 51/138 (36%), Gaps = 52/138 (37%)
Query: 141 IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF------------- 187
+FIG + FE +E LR FE G + + ++RD +T +GFG+V +
Sbjct: 16 LFIGGLRFETIDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYTTVEEVDAAMNAR 75
Query: 188 ---------------------------------------KAEEEELRKAFESCGEIDNVR 208
EE LR FE G+I+ +
Sbjct: 76 PHKVDGRAVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIE 135
Query: 209 LIRDQHTNIGKGFGYVNF 226
++ DQ + +GF +V F
Sbjct: 136 IMTDQGSGKKRGFAFVTF 153
>gi|348690229|gb|EGZ30043.1| hypothetical protein PHYSODRAFT_353718 [Phytophthora sojae]
Length = 197
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
Query: 140 SIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
SIFIGN+ ++ +E +R+ F CGEI + RL D+ T +GFG+V+F A E + +A +
Sbjct: 31 SIFIGNLAWDVDENTVREFFGECGEITSCRLATDRETGEFRGFGHVDF-ATTEAVDEAVK 89
Query: 200 SCGEIDNVRLIR 211
GE N R IR
Sbjct: 90 LAGEYLNNRAIR 101
Score = 38.1 bits (87), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 28/47 (59%)
Query: 183 GYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKVS 229
G + + +E +R+ F CGEI + RL D+ T +GFG+V+F +
Sbjct: 35 GNLAWDVDENTVREFFGECGEITSCRLATDRETGEFRGFGHVDFATT 81
>gi|334330945|ref|XP_001364005.2| PREDICTED: heterogeneous nuclear ribonucleoprotein D0-like
[Monodelphis domestica]
Length = 376
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 60/111 (54%), Gaps = 10/111 (9%)
Query: 94 RTNMNAYVRFKNLESVEKALE-----MNGHVIDEHTIRVDKALTTTKSNSHSIFIGNIPF 148
R+ +V FK ESV+K ++ +NG VID + K TK IF+G +
Sbjct: 157 RSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMK----TKEPVKKIFVGGLSP 212
Query: 149 EAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
+ EE++R+ F GE++++ L D TN +GF ++ FK EEE ++K E
Sbjct: 213 DTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFK-EEEPVKKIME 262
Score = 38.1 bits (87), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 31/142 (21%), Positives = 54/142 (38%), Gaps = 46/142 (32%)
Query: 132 TTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK--- 188
T + +FIG + ++ +++L+ F GE+ + L D T +GFG+V FK
Sbjct: 111 ATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESE 170
Query: 189 -------------------------------------------AEEEELRKAFESCGEID 205
EE++R+ F GE++
Sbjct: 171 SVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVE 230
Query: 206 NVRLIRDQHTNIGKGFGYVNFK 227
++ L D TN +GF ++ FK
Sbjct: 231 SIELPMDNKTNKRRGFCFITFK 252
>gi|387016396|gb|AFJ50317.1| Heterogeneous nuclear ribonucleoprotein D0 isoform b [Crotalus
adamanteus]
Length = 330
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 54/103 (52%), Gaps = 9/103 (8%)
Query: 94 RTNMNAYVRFKNLESVEKALE-----MNGHVIDEHTIRVDKALTTTKSNSHSIFIGNIPF 148
R+ +V FK ESVEK + +NG VID + K TK IF+G +
Sbjct: 111 RSRGFGFVLFKESESVEKVTDQKEHKLNGKVIDPKRAKAMK----TKEPVKKIFVGGLSP 166
Query: 149 EAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEE 191
+ EE++R+ F GE++++ L D TN +GF ++ FK EE
Sbjct: 167 DTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKDEE 209
>gi|349806125|gb|AEQ18535.1| putative protein containing rna recognition ( or rnp domain)
[Hymenochirus curtipes]
Length = 110
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 37/53 (69%)
Query: 56 SMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLES 108
S+FK +G +E+VRFRSV A+ +L RK KVH KR N+NAYV +K+ +S
Sbjct: 57 SLFKEFGPIESVRFRSVARAEASLSRKVATIHRKVHPKRKNINAYVVYKDEDS 109
>gi|13124487|sp|Q9JJ54.1|HNRPD_RAT RecName: Full=Heterogeneous nuclear ribonucleoprotein D0;
Short=hnRNP D0; AltName: Full=AU-rich element
RNA-binding protein 1
gi|9588096|dbj|BAB03465.1| RNA binding protein p45AUF1 [Rattus norvegicus]
Length = 353
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 60/111 (54%), Gaps = 10/111 (9%)
Query: 94 RTNMNAYVRFKNLESVEKALE-----MNGHVIDEHTIRVDKALTTTKSNSHSIFIGNIPF 148
R+ +V FK ESV+K ++ +NG VID + K TK IF+G +
Sbjct: 134 RSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMK----TKEPVKKIFVGGLSP 189
Query: 149 EAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
+ EE++R+ F GE++++ L D TN +GF ++ FK EEE ++K E
Sbjct: 190 DTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFK-EEEPVKKIME 239
Score = 37.0 bits (84), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 30/142 (21%), Positives = 54/142 (38%), Gaps = 46/142 (32%)
Query: 132 TTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK--- 188
T + +FIG + ++ +++L+ F G++ + L D T +GFG+V FK
Sbjct: 88 ATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESE 147
Query: 189 -------------------------------------------AEEEELRKAFESCGEID 205
EE++R+ F GE++
Sbjct: 148 SVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVE 207
Query: 206 NVRLIRDQHTNIGKGFGYVNFK 227
++ L D TN +GF ++ FK
Sbjct: 208 SIELPMDNKTNKRRGFCFITFK 229
>gi|147898871|ref|NP_001080179.1| cleavage stimulation factor, 3' pre-RNA, subunit 2, 64kDa [Xenopus
laevis]
gi|27735464|gb|AAH41291.1| Cstf-64 protein [Xenopus laevis]
Length = 518
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 41/68 (60%), Gaps = 7/68 (10%)
Query: 127 VDKALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVN 186
VD++L S+F+GNIP+EA EE+L+ F G + + RL+ D+ T KG+G+
Sbjct: 11 VDRSL-------RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCE 63
Query: 187 FKAEEEEL 194
++ +E L
Sbjct: 64 YQDQETAL 71
Score = 42.0 bits (97), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 32/55 (58%)
Query: 182 FGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKVSFTTLSSI 236
G + ++A EE+L+ F G + + RL+ D+ T KG+G+ ++ T LS++
Sbjct: 20 VGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAM 74
>gi|399031232|ref|ZP_10731328.1| RRM domain-containing RNA-binding protein [Flavobacterium sp.
CF136]
gi|398070499|gb|EJL61796.1| RRM domain-containing RNA-binding protein [Flavobacterium sp.
CF136]
Length = 119
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 38/52 (73%)
Query: 141 IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEE 192
IF+G++PF EE +LR++FE+ G +D+V++I D+ T KGFG+V ++E
Sbjct: 3 IFVGSLPFSIEEADLRESFEAYGAVDSVKIITDKFTGRSKGFGFVEMTNDDE 54
Score = 44.3 bits (103), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 30/42 (71%)
Query: 183 GYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYV 224
G + F EE +LR++FE+ G +D+V++I D+ T KGFG+V
Sbjct: 6 GSLPFSIEEADLRESFEAYGAVDSVKIITDKFTGRSKGFGFV 47
>gi|381186866|ref|ZP_09894434.1| RNA-binding region RNP-1 [Flavobacterium frigoris PS1]
gi|379651172|gb|EIA09739.1| RNA-binding region RNP-1 [Flavobacterium frigoris PS1]
Length = 120
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 38/52 (73%)
Query: 141 IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEE 192
IF+G++PF EE +LR++FE+ G +D+V++I D+ T KGFG+V ++E
Sbjct: 3 IFVGSLPFSIEEADLRESFEAYGAVDSVKIITDKFTGRSKGFGFVEMTNDDE 54
Score = 44.3 bits (103), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 30/42 (71%)
Query: 183 GYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYV 224
G + F EE +LR++FE+ G +D+V++I D+ T KGFG+V
Sbjct: 6 GSLPFSIEEADLRESFEAYGAVDSVKIITDKFTGRSKGFGFV 47
>gi|127139464|ref|NP_001076009.1| heterogeneous nuclear ribonucleoprotein D0 isoform c [Rattus
norvegicus]
gi|149046817|gb|EDL99591.1| heterogeneous nuclear ribonucleoprotein D, isoform CRA_b [Rattus
norvegicus]
Length = 304
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 60/111 (54%), Gaps = 10/111 (9%)
Query: 94 RTNMNAYVRFKNLESVEKALE-----MNGHVIDEHTIRVDKALTTTKSNSHSIFIGNIPF 148
R+ +V FK ESV+K ++ +NG VID + K TK IF+G +
Sbjct: 134 RSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMK----TKEPVKKIFVGGLSP 189
Query: 149 EAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
+ EE++R+ F GE++++ L D TN +GF ++ FK EEE ++K E
Sbjct: 190 DTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFK-EEEPVKKIME 239
>gi|403263350|ref|XP_003924000.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D0 isoform 1
[Saimiri boliviensis boliviensis]
Length = 306
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 60/111 (54%), Gaps = 10/111 (9%)
Query: 94 RTNMNAYVRFKNLESVEKALE-----MNGHVIDEHTIRVDKALTTTKSNSHSIFIGNIPF 148
R+ +V FK ESV+K ++ +NG VID + K TK IF+G +
Sbjct: 136 RSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMK----TKEPVKKIFVGGLSP 191
Query: 149 EAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
+ EE++R+ F GE++++ L D TN +GF ++ FK EEE ++K E
Sbjct: 192 DTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFK-EEEPVKKIME 241
Score = 37.7 bits (86), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 31/142 (21%), Positives = 54/142 (38%), Gaps = 46/142 (32%)
Query: 132 TTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK--- 188
T + +FIG + ++ +++L+ F GE+ + L D T +GFG+V FK
Sbjct: 90 ATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESE 149
Query: 189 -------------------------------------------AEEEELRKAFESCGEID 205
EE++R+ F GE++
Sbjct: 150 SVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVE 209
Query: 206 NVRLIRDQHTNIGKGFGYVNFK 227
++ L D TN +GF ++ FK
Sbjct: 210 SIELPMDNKTNKRRGFCFITFK 231
>gi|148878011|gb|AAI46039.1| HNRNPD protein [Bos taurus]
Length = 355
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 60/111 (54%), Gaps = 10/111 (9%)
Query: 94 RTNMNAYVRFKNLESVEKALE-----MNGHVIDEHTIRVDKALTTTKSNSHSIFIGNIPF 148
R+ +V FK ESV+K ++ +NG VID + K TK IF+G +
Sbjct: 136 RSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMK----TKEPVKKIFVGGLSP 191
Query: 149 EAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
+ EE++R+ F GE++++ L D TN +GF ++ FK EEE ++K E
Sbjct: 192 DTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFK-EEEPVKKIME 241
Score = 38.1 bits (87), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 31/142 (21%), Positives = 54/142 (38%), Gaps = 46/142 (32%)
Query: 132 TTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK--- 188
T + +FIG + ++ +++L+ F GE+ + L D T +GFG+V FK
Sbjct: 90 ATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESE 149
Query: 189 -------------------------------------------AEEEELRKAFESCGEID 205
EE++R+ F GE++
Sbjct: 150 SVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVE 209
Query: 206 NVRLIRDQHTNIGKGFGYVNFK 227
++ L D TN +GF ++ FK
Sbjct: 210 SIELPMDNKTNKRRGFCFITFK 231
>gi|194332803|ref|NP_001123707.1| cleavage stimulation factor, 3' pre-RNA, subunit 2, 64kDa [Xenopus
(Silurana) tropicalis]
gi|189442601|gb|AAI67314.1| LOC100170457 protein [Xenopus (Silurana) tropicalis]
Length = 498
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 41/68 (60%), Gaps = 7/68 (10%)
Query: 127 VDKALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVN 186
VD++L S+F+GNIP+EA EE+L+ F G + + RL+ D+ T KG+G+
Sbjct: 11 VDRSL-------RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCE 63
Query: 187 FKAEEEEL 194
++ +E L
Sbjct: 64 YQDQETAL 71
Score = 42.0 bits (97), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 32/55 (58%)
Query: 182 FGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKVSFTTLSSI 236
G + ++A EE+L+ F G + + RL+ D+ T KG+G+ ++ T LS++
Sbjct: 20 VGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAM 74
>gi|83773473|dbj|BAE63600.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 440
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 77/184 (41%), Gaps = 46/184 (25%)
Query: 54 VTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKAL 113
+ S F+ +GE+ VR M + R+ YV + N KA
Sbjct: 211 LQSEFEEFGELSGVRI-----------------MTERDTGRSRGFGYVEYTNAVDAAKAF 253
Query: 114 E------MNGHVI--DEHTIRV---------DKALTTTKS-------NSHSIFIGNIPFE 149
E ++G I D T R D+A +S S ++F+GNIPF
Sbjct: 254 EAKRDTEIDGRKINLDYATGRPANREQGGFQDRAQARARSFGDQASPESDTLFVGNIPFS 313
Query: 150 AEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE--SCGEIDN- 206
A E+ L + F G I +RL D + KGFGYV F + EE R+AF + EID
Sbjct: 314 ANEDSLHEVFGQKGSILGIRLPTDPESGRPKGFGYVQFSS-VEEAREAFNELNGAEIDGR 372
Query: 207 -VRL 209
VRL
Sbjct: 373 PVRL 376
Score = 45.1 bits (105), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 45/81 (55%), Gaps = 3/81 (3%)
Query: 138 SHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKA 197
S ++F+GN+ + +E L+ FE GE+ VR++ ++ T +GFGYV + + KA
Sbjct: 194 SANLFVGNLSWNVDEAWLQSEFEEFGELSGVRIMTERDTGRSRGFGYVEY-TNAVDAAKA 252
Query: 198 FES--CGEIDNVRLIRDQHTN 216
FE+ EID ++ D T
Sbjct: 253 FEAKRDTEIDGRKINLDYATG 273
Score = 36.6 bits (83), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 23/44 (52%)
Query: 183 GYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 226
G + F A E+ L + F G I +RL D + KGFGYV F
Sbjct: 308 GNIPFSANEDSLHEVFGQKGSILGIRLPTDPESGRPKGFGYVQF 351
>gi|255714705|ref|XP_002553634.1| KLTH0E03520p [Lachancea thermotolerans]
gi|238935016|emb|CAR23197.1| KLTH0E03520p [Lachancea thermotolerans CBS 6340]
Length = 516
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 55/117 (47%), Gaps = 5/117 (4%)
Query: 100 YVRFKNLESVEKALEMNGHVIDEHTIRVDK----ALTTTKSNSHSIFIGNIPFEAEEEEL 155
+V F + + AL NG +I R K + T N HS+F+G+I E +L
Sbjct: 90 FVEFPSHLNASNALLKNGLLIPNARNRYLKLNWASFATAPGNEHSVFVGDIAPNVSEAQL 149
Query: 156 RKAFES-CGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIR 211
+ F S N +++ DQ T + KG+G+V F E E+ R E G N R +R
Sbjct: 150 FELFISRYASTLNAKIVFDQMTGVSKGYGFVKFGQESEQQRALLEMQGVFLNGRAVR 206
>gi|148230364|ref|NP_001091533.1| heterogeneous nuclear ribonucleoprotein D0 [Bos taurus]
gi|146231918|gb|ABQ13034.1| heterogeneous nuclear ribonucleoprotein D [Bos taurus]
gi|296486390|tpg|DAA28503.1| TPA: heterogeneous nuclear ribonucleoprotein D [Bos taurus]
Length = 306
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 60/111 (54%), Gaps = 10/111 (9%)
Query: 94 RTNMNAYVRFKNLESVEKALE-----MNGHVIDEHTIRVDKALTTTKSNSHSIFIGNIPF 148
R+ +V FK ESV+K ++ +NG VID + K TK IF+G +
Sbjct: 136 RSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMK----TKEPVKKIFVGGLSP 191
Query: 149 EAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
+ EE++R+ F GE++++ L D TN +GF ++ FK EEE ++K E
Sbjct: 192 DTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFK-EEEPVKKIME 241
Score = 37.7 bits (86), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 31/142 (21%), Positives = 54/142 (38%), Gaps = 46/142 (32%)
Query: 132 TTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK--- 188
T + +FIG + ++ +++L+ F GE+ + L D T +GFG+V FK
Sbjct: 90 ATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESE 149
Query: 189 -------------------------------------------AEEEELRKAFESCGEID 205
EE++R+ F GE++
Sbjct: 150 SVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVE 209
Query: 206 NVRLIRDQHTNIGKGFGYVNFK 227
++ L D TN +GF ++ FK
Sbjct: 210 SIELPMDNKTNKRRGFCFITFK 231
>gi|380478594|emb|CCF43506.1| CC1-like family splicing factor [Colletotrichum higginsianum]
Length = 565
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 67/128 (52%), Gaps = 17/128 (13%)
Query: 93 KRTNMNAYVRFKNLESVEKALEMNGH-------VIDEHTIRVDKALTTTKSNS------- 138
+R+ YV FKN +SV +AL++ G ++ ++ + TT++ S
Sbjct: 218 QRSKGVGYVEFKNEDSVTQALQLTGQKLLGIPIIVQMTEAEKNRQVRTTETTSAHPNSIP 277
Query: 139 -HSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKA 197
H +++GNI F E++L+ FE GE++ V+L +D + +G+G+V ++ E + R+A
Sbjct: 278 FHRLYVGNIHFNVTEQDLQAVFEPFGELEFVQLQKDDNGR-SRGYGFVQYR-EASQAREA 335
Query: 198 FESCGEID 205
E D
Sbjct: 336 LEKMNGFD 343
>gi|116787606|gb|ABK24573.1| unknown [Picea sitchensis]
Length = 290
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 57/104 (54%), Gaps = 10/104 (9%)
Query: 99 AYVRFKNLESVEKALEM-NGHVIDEHTIRVDKAL---------TTTKSNSHSIFIGNIPF 148
+V +E EK +E+ N H ++ + V+KA + S+++ I++GN+P+
Sbjct: 157 GFVTMGTVEEAEKGVELFNRHSLEGRLLTVNKAAPRGTKVERPSQAGSSTNKIYVGNLPW 216
Query: 149 EAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEE 192
+A++ L + F G++ R++ D+ T +GFG+V + +E E
Sbjct: 217 QADDNSLLQLFSEHGKVLEARVVYDRETGRSRGFGFVTYSSESE 260
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 33/52 (63%)
Query: 141 IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEE 192
+F+GN+PF + ++L + FE GE+ +V +I D+ T +GFG+V EE
Sbjct: 115 LFVGNLPFNLDNQQLGELFEGAGEVLDVNIITDRETGNSRGFGFVTMGTVEE 166
>gi|49619013|gb|AAT68091.1| KIAA0682-like [Danio rerio]
Length = 927
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 60/118 (50%), Gaps = 17/118 (14%)
Query: 99 AYVRFKNLESVEKALEMNGH-VIDEHTIRVD---------------KALTTTKSNSHSIF 142
+V++K E+ +KA+ H +DEH + V K T K + I
Sbjct: 749 GFVQYKTPEAAQKAMRQLQHCTVDEHQLEVKISEREVKSGVAQAKRKKQTARKQTTSKIL 808
Query: 143 IGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFES 200
+ NIPF+A +ELR+ F + GE+ VRL + +GFG+++F +++ +KAF +
Sbjct: 809 VRNIPFQATVKELRELFCTFGELKTVRLPKKGIGGSHRGFGFIDF-LTKQDAKKAFSA 865
Score = 38.5 bits (88), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 59/157 (37%), Gaps = 35/157 (22%)
Query: 66 TVRFRSVP-------VADITLPRKA-CIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNG 117
TV+ R P V + +P K I+ K + R + YV ++ VE+AL ++
Sbjct: 291 TVKLRGAPFNVKEQQVKEFMMPLKPVAIRFAKNSDGRNSGYVYVDLRSEAEVERALRLDK 350
Query: 118 HVIDEHTIRVDKA---------------------------LTTTKSNSHSIFIGNIPFEA 150
+ I V +A + S +FI N+P+
Sbjct: 351 DYMGGRYIEVFRANNFKNDRRSAKRSEMEKNFVRELKDDEEEEDVAESGRLFIRNMPYTC 410
Query: 151 EEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 187
EE+L++ F G + V D T KGF +V +
Sbjct: 411 TEEDLKELFSKHGPLSEVLFPIDSLTKKPKGFAFVTY 447
>gi|426232774|ref|XP_004010395.1| PREDICTED: probable RNA-binding protein 23 isoform 1 [Ovis aries]
Length = 463
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 61/120 (50%), Gaps = 14/120 (11%)
Query: 93 KRTNMNAYVRFKNLESVEKALEMNGH------VIDEHTIRVDKALTTTKSNSHS------ 140
+R+ AYV F ++SV A+ + G +I + + L T SN
Sbjct: 219 RRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQAEKNRLAATASNLQKGSGGPV 278
Query: 141 -IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
+++G++ F E+ LR FE G+IDN+ L++D T KG+G++ F ++ E R+A E
Sbjct: 279 RLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSETGCSKGYGFITF-SDSECARRALE 337
Score = 43.5 bits (101), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 29/47 (61%)
Query: 183 GYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKVS 229
G ++F E+ LR FE G+IDN+ L++D T KG+G++ F S
Sbjct: 283 GSLHFNITEDMLRGIFEPFGKIDNIVLMKDSETGCSKGYGFITFSDS 329
>gi|74001695|ref|XP_848950.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D0 isoform 2
[Canis lupus familiaris]
Length = 306
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 60/111 (54%), Gaps = 10/111 (9%)
Query: 94 RTNMNAYVRFKNLESVEKALE-----MNGHVIDEHTIRVDKALTTTKSNSHSIFIGNIPF 148
R+ +V FK ESV+K ++ +NG VID + K TK IF+G +
Sbjct: 136 RSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMK----TKEPVKKIFVGGLSP 191
Query: 149 EAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
+ EE++R+ F GE++++ L D TN +GF ++ FK EEE ++K E
Sbjct: 192 DTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFK-EEEPVKKIME 241
Score = 37.7 bits (86), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 31/142 (21%), Positives = 54/142 (38%), Gaps = 46/142 (32%)
Query: 132 TTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK--- 188
T + +FIG + ++ +++L+ F GE+ + L D T +GFG+V FK
Sbjct: 90 ATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESE 149
Query: 189 -------------------------------------------AEEEELRKAFESCGEID 205
EE++R+ F GE++
Sbjct: 150 SVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVE 209
Query: 206 NVRLIRDQHTNIGKGFGYVNFK 227
++ L D TN +GF ++ FK
Sbjct: 210 SIELPMDNKTNKRRGFCFITFK 231
>gi|367051094|ref|XP_003655926.1| hypothetical protein THITE_2120229 [Thielavia terrestris NRRL 8126]
gi|347003190|gb|AEO69590.1| hypothetical protein THITE_2120229 [Thielavia terrestris NRRL 8126]
Length = 500
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 62/121 (51%), Gaps = 9/121 (7%)
Query: 99 AYVRFKNLESVEKALE-MNGHVIDEHTIRVDKALTTTK------SNSHSIFIGNIPFEAE 151
+V + + + E+A++ +NG + + IRV+ A + SN IF+G++ E
Sbjct: 133 GFVEYDDPGAAERAMQTLNGRRVHQSEIRVNWAYQSNNANKEDTSNHFHIFVGDLSNEVN 192
Query: 152 EEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESC-GEIDNVRLI 210
+E L +AF + G + R++ D T +G+G+V F+ E + KA S GE R I
Sbjct: 193 DEVLLQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFR-ERADAEKALSSMDGEWLGSRAI 251
Query: 211 R 211
R
Sbjct: 252 R 252
>gi|336450816|ref|ZP_08621262.1| RRM domain-containing RNA-binding protein [Idiomarina sp. A28L]
gi|336282072|gb|EGN75310.1| RRM domain-containing RNA-binding protein [Idiomarina sp. A28L]
Length = 163
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 40/63 (63%)
Query: 132 TTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEE 191
T+ ++ ++++GN+PF+ EEE+ F GE+ +VRL++D+ T KG+G+V A
Sbjct: 74 TSKGTDGRTLYVGNLPFKISEEEVENLFGRYGEVTDVRLVKDRRTGRKKGYGFVEMDATG 133
Query: 192 EEL 194
+L
Sbjct: 134 ADL 136
Score = 42.0 bits (97), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 30/52 (57%)
Query: 183 GYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKVSFTTLS 234
G + FK EEE+ F GE+ +VRL++D+ T KG+G+V + L+
Sbjct: 86 GNLPFKISEEEVENLFGRYGEVTDVRLVKDRRTGRKKGYGFVEMDATGADLA 137
>gi|51258747|gb|AAH80037.1| Cstf-64-prov protein [Xenopus laevis]
Length = 498
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 41/68 (60%), Gaps = 7/68 (10%)
Query: 127 VDKALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVN 186
VD++L S+F+GNIP+EA EE+L+ F G + + RL+ D+ T KG+G+
Sbjct: 11 VDRSL-------RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCE 63
Query: 187 FKAEEEEL 194
++ +E L
Sbjct: 64 YQDQETAL 71
Score = 42.0 bits (97), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 32/55 (58%)
Query: 182 FGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKVSFTTLSSI 236
G + ++A EE+L+ F G + + RL+ D+ T KG+G+ ++ T LS++
Sbjct: 20 VGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAM 74
>gi|449477354|ref|XP_002196178.2| PREDICTED: probable RNA-binding protein 19 [Taeniopygia guttata]
Length = 944
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 60/118 (50%), Gaps = 17/118 (14%)
Query: 99 AYVRFKNLESVEKAL-EMNGHVIDEHTIRVD--------------KALTTTKSNSHSIFI 143
+V +K ES +KAL ++ G +D H + V K K + I +
Sbjct: 763 GFVEYKKPESAQKALRQLQGCTVDGHKLEVKLSERAVRPAVKSTRKKQIAKKQKTSKILV 822
Query: 144 GNIPFEAEEEELRKAFESCGEIDNVRLIRD-QHTNIGKGFGYVNFKAEEEELRKAFES 200
NIPF+A E+R+ F + GE+ VRL + T +GFG+V+F +++ +KAF++
Sbjct: 823 RNIPFQATVREIRELFSTFGELKTVRLPKKMAGTGSHRGFGFVDF-VTKQDAKKAFQA 879
Score = 43.5 bits (101), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 37/178 (20%), Positives = 70/178 (39%), Gaps = 33/178 (18%)
Query: 66 TVRFRSVP-------VADITLPRKA-CIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNG 117
TV+ R P + + P K I+M K + + + +V K+ +++AL+
Sbjct: 297 TVKLRGAPSSITEEKIREFFFPLKPVAIRMGKKAQGKNSGYIFVDLKSEAEMQRALKRKK 356
Query: 118 HVIDEHTIRVDKALTTTK-------------------------SNSHSIFIGNIPFEAEE 152
+ + V + T K S S +F+ N+PF + E
Sbjct: 357 EFLGGRCVEVSRCRNTPKEPVPAKPEHQPWQRTLRDDEEEEDLSESGRLFVRNLPFTSTE 416
Query: 153 EELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLI 210
E+L K F G + + D+ T KGF ++ + E ++ E G++ R++
Sbjct: 417 EDLEKIFSKYGPLSEIHFPIDKLTKKPKGFAFITYMIPEHAVKALAELDGQVFQGRMM 474
>gi|410922319|ref|XP_003974630.1| PREDICTED: RNA-binding protein Musashi homolog 1-like isoform 3
[Takifugu rubripes]
Length = 363
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 57/118 (48%), Gaps = 11/118 (9%)
Query: 82 KACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTI--------RVDKALTT 133
K C+ M KR+ +V F + V+K L H +D TI R L T
Sbjct: 47 KECMVMRDPVTKRSRGFGFVTFVDQAGVDKVLAQTRHELDSKTIDPKVAFPRRAQPKLVT 106
Query: 134 TKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEE 191
+ IF+G + E++++ F+ G++D+ L+ D+ TN +GFG+V F+ E+
Sbjct: 107 ---RTKKIFVGGLSVNTTIEDVKQYFDQFGKVDDAMLMFDKTTNRHRGFGFVTFENED 161
Score = 44.7 bits (104), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 30/137 (21%), Positives = 57/137 (41%), Gaps = 50/137 (36%)
Query: 141 IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF------------- 187
+FIG + ++ +E L++ F GE+ ++RD T +GFG+V F
Sbjct: 22 MFIGGLSWQTTQEGLKEYFCKYGEVKECMVMRDPVTKRSRGFGFVTFVDQAGVDKVLAQT 81
Query: 188 -----------------KAEE--------------------EELRKAFESCGEIDNVRLI 210
+A+ E++++ F+ G++D+ L+
Sbjct: 82 RHELDSKTIDPKVAFPRRAQPKLVTRTKKIFVGGLSVNTTIEDVKQYFDQFGKVDDAMLM 141
Query: 211 RDQHTNIGKGFGYVNFK 227
D+ TN +GFG+V F+
Sbjct: 142 FDKTTNRHRGFGFVTFE 158
>gi|209154614|gb|ACI33539.1| Heterogeneous nuclear ribonucleoprotein A/B [Salmo salar]
Length = 359
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 61/115 (53%), Gaps = 2/115 (1%)
Query: 85 IKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKSNSHSIFIG 144
IKM+ + R+ ++ F+ SV+K LE H +D I KA+ K + IF+G
Sbjct: 104 IKMDS-NTGRSRGFGFILFQTAASVDKVLEQKEHRLDGRQIDPKKAMAMKKEPAKKIFVG 162
Query: 145 NIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
+ EA EE +R+ F + GEI+++ L D +GF ++ FK EE ++K E
Sbjct: 163 GLNPEATEETIREYFGTFGEIESIELPVDPKFKKRRGFIFITFK-EESTVKKCLE 216
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.319 0.133 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,363,801,730
Number of Sequences: 23463169
Number of extensions: 129428651
Number of successful extensions: 417228
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 12951
Number of HSP's successfully gapped in prelim test: 4795
Number of HSP's that attempted gapping in prelim test: 366771
Number of HSP's gapped (non-prelim): 52809
length of query: 239
length of database: 8,064,228,071
effective HSP length: 138
effective length of query: 101
effective length of database: 9,121,278,045
effective search space: 921249082545
effective search space used: 921249082545
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 74 (33.1 bits)