BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14193
(239 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P42696|RBM34_HUMAN RNA-binding protein 34 OS=Homo sapiens GN=RBM34 PE=1 SV=2
Length = 430
Score = 121 bits (303), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 61/135 (45%), Positives = 86/135 (63%), Gaps = 1/135 (0%)
Query: 54 VTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKAL 113
+ S FK YG++E+VRFRS+ A+ TL +K K+H + N+NAYV FK + +AL
Sbjct: 201 LKSFFKEYGQIESVRFRSLIPAEGTLSKKLAAIKRKIHPDQKNINAYVVFKEESAATQAL 260
Query: 114 EMNG-HVIDEHTIRVDKALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIR 172
+ NG + D IRVD A T+ + S+F+GN+P++ EE + K F CG I VR++R
Sbjct: 261 KRNGAQIADGFRIRVDLASETSSRDKRSVFVGNLPYKVEESAIEKHFLDCGSIMAVRIVR 320
Query: 173 DQHTNIGKGFGYVNF 187
D+ T IGKGFGYV F
Sbjct: 321 DKMTGIGKGFGYVLF 335
Score = 31.2 bits (69), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 23/34 (67%)
Query: 137 NSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRL 170
N ++F+GN+P +++L+ F+ G+I++VR
Sbjct: 183 NERTVFVGNLPVTCNKKKLKSFFKEYGQIESVRF 216
>sp|Q6C2Q7|NOP12_YARLI Nucleolar protein 12 OS=Yarrowia lipolytica (strain CLIB 122 / E
150) GN=NOP12 PE=3 SV=1
Length = 509
Score = 116 bits (290), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 58/134 (43%), Positives = 85/134 (63%), Gaps = 2/134 (1%)
Query: 56 SMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALEM 115
++F G V +VRFRS+ + + LPRK + H KR +NAY+ FKN++SV+ AL +
Sbjct: 191 ALFAAIGTVASVRFRSISFSKL-LPRKVAFISQQFHSKRDTVNAYIVFKNVKSVKGALTL 249
Query: 116 NGHVIDEHTIRVDK-ALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQ 174
NG V +RVD A + + +F+G + FE +EE L +AF SCG+++ VR++RD
Sbjct: 250 NGSVFKGFHMRVDSVAHPGAQDHKRCVFVGALDFEEQEESLWEAFSSCGDVEYVRIVRDP 309
Query: 175 HTNIGKGFGYVNFK 188
TN+GKGF YV FK
Sbjct: 310 KTNVGKGFAYVQFK 323
Score = 35.8 bits (81), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 52/100 (52%), Gaps = 22/100 (22%)
Query: 90 VHEKRTNMN---AYVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKSNSHSIFIGNI 146
V + +TN+ AYV+FK++ SVE+AL +NG I+E L+ + +N + +
Sbjct: 306 VRDPKTNVGKGFAYVQFKDVNSVEQALLLNGKGINE--------LSKSTTNKRKLRVSRA 357
Query: 147 PFEAEEEELRKAFESCGEIDNVR------LIRDQHTNIGK 180
+ +E ++A ++ N+R L RD+ ++ G+
Sbjct: 358 KSQHSQERAKQA-----DMKNIRNAKTEGLSRDEKSHFGR 392
>sp|Q8C5L7|RBM34_MOUSE RNA-binding protein 34 OS=Mus musculus GN=Rbm34 PE=1 SV=1
Length = 375
Score = 114 bits (286), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 60/133 (45%), Positives = 83/133 (62%), Gaps = 1/133 (0%)
Query: 56 SMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALEM 115
S FK YG+VE+VRFRSV A+ TL +K K H + ++NAYV FK+ + KAL+
Sbjct: 207 SFFKEYGQVESVRFRSVMPAEGTLTKKLAAIKRKFHPDQKSINAYVVFKDESAAAKALQR 266
Query: 116 NGHVIDEH-TIRVDKALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQ 174
NG I E IRVD A T + S+F+GN+P++ E+ L + F CG I VR++R+
Sbjct: 267 NGAQIAEGFRIRVDLASETASRDKRSVFVGNLPYKIEDSALEEHFLDCGSIVAVRIVRNP 326
Query: 175 HTNIGKGFGYVNF 187
T +G+GFGYV F
Sbjct: 327 LTGVGRGFGYVLF 339
>sp|Q5M9F1|RBM34_RAT RNA-binding protein 34 OS=Rattus norvegicus GN=Rbm34 PE=2 SV=1
Length = 428
Score = 113 bits (283), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 60/135 (44%), Positives = 82/135 (60%), Gaps = 1/135 (0%)
Query: 54 VTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKAL 113
+ S FK YG+VE+VRFRSV A+ TL +K K H + ++NAYV FK + KAL
Sbjct: 199 LKSFFKEYGQVESVRFRSVMPAEGTLSKKLAAIKRKFHPDQKSINAYVVFKEERAAAKAL 258
Query: 114 EMNGHVIDEH-TIRVDKALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIR 172
+ NG I E IRVD A T + S+F+GN+P+ +E L + F CG I VR++R
Sbjct: 259 QRNGAQIAEGFRIRVDLASETASRDKRSVFVGNLPYRVDESALEEHFLDCGSIVAVRIVR 318
Query: 173 DQHTNIGKGFGYVNF 187
+ T +G+GFGYV F
Sbjct: 319 NPLTGVGRGFGYVLF 333
>sp|Q75BJ7|NOP12_ASHGO Nucleolar protein 12 OS=Ashbya gossypii (strain ATCC 10895 / CBS
109.51 / FGSC 9923 / NRRL Y-1056) GN=NOP12 PE=3 SV=1
Length = 426
Score = 109 bits (272), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 63/158 (39%), Positives = 88/158 (55%), Gaps = 13/158 (8%)
Query: 64 VETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEH 123
VE++RFRS+ + LPRK K+H R ++NAYV + E+V A ++NG V +H
Sbjct: 184 VESIRFRSIAFEE-ALPRKVAFVQQKLHHTRDSVNAYVVYAEKEAVTAACKLNGSVFHDH 242
Query: 124 TIRVDK-ALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGF 182
+R D A S+F+GN+ FE EE L K F SCG I+ VR++RD TN+GKGF
Sbjct: 243 HLRFDSVAHPAPHDRKRSVFVGNLDFEESEESLWKHFMSCGPIEYVRIVRDPKTNVGKGF 302
Query: 183 GYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKG 220
YV F A+ + KA L+ D+ +GKG
Sbjct: 303 AYVQF-ADLVSVNKAL----------LLNDKKMAVGKG 329
>sp|Q08208|NOP12_YEAST Nucleolar protein 12 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=NOP12 PE=1 SV=1
Length = 459
Score = 108 bits (269), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 58/127 (45%), Positives = 76/127 (59%), Gaps = 3/127 (2%)
Query: 64 VETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALE-MNGHVIDE 122
+E++RFRS+ D LPRK K H+ R +NAY+ +KN +V K +N V +
Sbjct: 203 IESIRFRSISF-DEALPRKVAFVQQKFHKSRDTINAYIVYKNKSAVRKICSNLNAVVFQD 261
Query: 123 HTIRVDK-ALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKG 181
H +RVD A SIF+GN+ FE EE L K FE CG+I+ VR+IRD TN+GKG
Sbjct: 262 HHLRVDSVAHPAPHDKKRSIFVGNLDFEEIEESLWKHFEPCGDIEYVRIIRDSKTNMGKG 321
Query: 182 FGYVNFK 188
F YV FK
Sbjct: 322 FAYVQFK 328
Score = 33.5 bits (75), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 23/67 (34%)
Query: 53 SVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMN---AYVRFKNLESV 109
S+ F+P G++E VR + + +TNM AYV+FK+L+SV
Sbjct: 294 SLWKHFEPCGDIEYVRI--------------------IRDSKTNMGKGFAYVQFKDLQSV 333
Query: 110 EKALEMN 116
KAL +N
Sbjct: 334 NKALLLN 340
>sp|O13741|NOP12_SCHPO Nucleolar protein 12 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=nop12 PE=1 SV=1
Length = 438
Score = 105 bits (261), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 54/136 (39%), Positives = 83/136 (61%), Gaps = 2/136 (1%)
Query: 54 VTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKAL 113
+T F+ +G V+++RFRS+ ++ +PRK K H +R +NAY+ F++ S AL
Sbjct: 185 LTKHFRQFGAVDSIRFRSLAFSE-AIPRKVAFFEKKFHSERDTVNAYIVFRDSSSARSAL 243
Query: 114 EMNGHVIDEHTIRVDK-ALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIR 172
+NG + + +RVD + + +F+GN+ FEAEEE L + F CG ID VR++R
Sbjct: 244 SLNGTMFMDRHLRVDSVSHPMPQDTKRCVFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVR 303
Query: 173 DQHTNIGKGFGYVNFK 188
D TN+GKGF Y+ FK
Sbjct: 304 DPKTNLGKGFAYIQFK 319
>sp|Q6CKV6|NOP12_KLULA Nucleolar protein 12 OS=Kluyveromyces lactis (strain ATCC 8585 /
CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37)
GN=NOP12 PE=3 SV=2
Length = 462
Score = 103 bits (258), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 56/130 (43%), Positives = 81/130 (62%), Gaps = 9/130 (6%)
Query: 64 VETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALE-MNGHVIDE 122
VE++RFRS+ + LPRK K+H+ R ++NAY + + V+ + +NG V ++
Sbjct: 221 VESIRFRSIAFEE-ALPRKVAFVHQKLHKSRDSINAYAVYGSSNPVKIMCQYLNGKVFND 279
Query: 123 HTIRVDKALTTTKSNSH----SIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNI 178
H +RVD + T + H S+F+GN+ FE EE L K FE CG+I+ VR+IRD TN+
Sbjct: 280 HHLRVD---SVTHPSPHDKRRSVFVGNLDFEEVEESLWKHFEPCGDIEYVRIIRDSKTNM 336
Query: 179 GKGFGYVNFK 188
GKGF YV FK
Sbjct: 337 GKGFAYVQFK 346
Score = 31.6 bits (70), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 55/126 (43%), Gaps = 28/126 (22%)
Query: 53 SVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMN---AYVRFKNLESV 109
S+ F+P G++E VR + + +TNM AYV+FK+ +SV
Sbjct: 312 SLWKHFEPCGDIEYVRI--------------------IRDSKTNMGKGFAYVQFKDFQSV 351
Query: 110 EKALEMNGHVIDE----HTIRVDKALTTTKSNSHSIFIGNIPF-EAEEEELRKAFESCGE 164
KAL ++ I E +R+ + K+ + + N + + +L +A + G+
Sbjct: 352 SKALLLHEKKIHEGKKARKLRISRCKNMRKAQGNQSSLQNNKLNDQQRTKLGRAKKVLGK 411
Query: 165 IDNVRL 170
D +L
Sbjct: 412 ADRAKL 417
>sp|Q5AHI7|NOP12_CANAL Nucleolar protein 12 OS=Candida albicans (strain SC5314 / ATCC
MYA-2876) GN=NOP12 PE=3 SV=1
Length = 454
Score = 103 bits (256), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 54/135 (40%), Positives = 84/135 (62%), Gaps = 4/135 (2%)
Query: 57 MFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMN 116
+FK YG+++++R+RS+ D LPRK +H+ R ++NAY+ +K + A E+N
Sbjct: 183 LFKHYGKIDSIRYRSISF-DEHLPRKVAFAKKNLHKSRDSVNAYIVYKEKPASIAAKELN 241
Query: 117 GHVIDEHTIRVDK-ALTTTKSNSHSIFIGNIPFEAEEEELRKAFES--CGEIDNVRLIRD 173
V ++H +RVD + K N +IF+GN+ FE +EE L K F S ++++VR+IRD
Sbjct: 242 ATVFEDHHLRVDHVSHPAPKDNKRTIFVGNLDFEEKEETLWKYFNSKLDQDVESVRIIRD 301
Query: 174 QHTNIGKGFGYVNFK 188
TN+GKGF V FK
Sbjct: 302 SKTNLGKGFALVQFK 316
>sp|Q6FUS6|NOP12_CANGA Nucleolar protein 12 OS=Candida glabrata (strain ATCC 2001 / CBS
138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=NOP12 PE=3
SV=1
Length = 396
Score = 99.8 bits (247), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 51/127 (40%), Positives = 74/127 (58%), Gaps = 4/127 (3%)
Query: 64 VETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKAL--EMNGHVID 121
++++RFRSV D LPRK K+H+ R ++NAY+ +K + L +NG V
Sbjct: 151 IQSIRFRSVSFED-ALPRKVAFVQQKLHKSRASVNAYIVYKEQSPLLNKLIKRLNGQVFS 209
Query: 122 EHTIRVDKALTTTKSNSH-SIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGK 180
+RVD + S+F+GN+ FE +EE L K F +CG I+ VR++RD TN+GK
Sbjct: 210 NRHLRVDSITHPAPHDKQRSVFVGNLDFEEDEESLWKHFGACGSIEYVRIVRDPKTNMGK 269
Query: 181 GFGYVNF 187
GF YV F
Sbjct: 270 GFAYVQF 276
>sp|Q6BTS9|NOP12_DEBHA Nucleolar protein 12 OS=Debaryomyces hansenii (strain ATCC 36239 /
CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=NOP12 PE=3
SV=2
Length = 462
Score = 94.0 bits (232), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 53/136 (38%), Positives = 79/136 (58%), Gaps = 5/136 (3%)
Query: 57 MFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKAL-EM 115
+F YG+++++RFRS+ D +PRK K+H R +NAYV F E K + ++
Sbjct: 183 LFSQYGKIQSIRFRSISFDD-AVPRKVAFAKKKLHSSRDTLNAYVVFAEKEPSLKCVPKL 241
Query: 116 NGHVIDEHTIRVDK-ALTTTKSNSHSIFIGNIPFEAEEEELRKAFES--CGEIDNVRLIR 172
N + +RVD A K N +IF+GN+ FE +EE L + F S ++++VR+IR
Sbjct: 242 NATEFEHAHLRVDHVAHPAPKDNKRTIFVGNLDFEEKEETLWRYFNSKTDNDVESVRVIR 301
Query: 173 DQHTNIGKGFGYVNFK 188
D TN+GKGF V FK
Sbjct: 302 DAKTNVGKGFALVQFK 317
>sp|Q7S2L7|NOP12_NEUCR Nucleolar protein 12 OS=Neurospora crassa (strain ATCC 24698 /
74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=nop-12
PE=3 SV=1
Length = 594
Score = 69.3 bits (168), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 89/183 (48%), Gaps = 17/183 (9%)
Query: 49 HALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRT-NMNAYVRFKNLE 107
H S + KP +VE++RFRS A +P++A V E T + NAYV +
Sbjct: 224 HMASVLDKEAKPAQKVESIRFRSTAFATAAIPKRAAYIKKSVMEATTKSTNAYVVYSTPA 283
Query: 108 SVEKAL-EMNGHVIDEHTIRVDK-ALTTTKSNSHSIFIGNIPFEAEEEELR-KAFESCGE 164
+ A ++NG ++ + IRVD A + +F+GN+ F +E L+ K E E
Sbjct: 284 AARLACSKLNGTIVLDRHIRVDSVAHPAPVDHKRCVFVGNLGFVDDETVLQVKVDEDGKE 343
Query: 165 IDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAF-ESCGEIDNVRLIRDQHTNIGKGFGY 223
+ + Q ++ EE L + F + G++++VR++RD T +GKGF Y
Sbjct: 344 VTEKKKRTKQPMDV------------EEGLWRVFGKEGGKVESVRVVRDPVTRVGKGFAY 391
Query: 224 VNF 226
V F
Sbjct: 392 VQF 394
>sp|Q4WCH5|NOP12_ASPFU Nucleolar protein 12 OS=Neosartorya fumigata (strain ATCC MYA-4609
/ Af293 / CBS 101355 / FGSC A1100) GN=nop12 PE=3 SV=1
Length = 538
Score = 68.9 bits (167), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 60/212 (28%), Positives = 109/212 (51%), Gaps = 24/212 (11%)
Query: 26 VFL-NIWKMALKLK-MNPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADIT-LPRK 82
VFL N+ A+K K +L K LS++ P+ +VE++RFRSV A +P++
Sbjct: 205 VFLGNVSSQAIKSKSAKKTLLKHLASFLSTLPESTGPH-KVESIRFRSVAFASGGKVPKR 263
Query: 83 ACIKMNKVHEKRT-NMNAYVRFKNLESVEKA-LEMNGHVIDEHTIRVDKALTTTK-SNSH 139
A ++ + T + NAYV + +++ KA +NG V+ + +RVD ++ +
Sbjct: 264 AAFARREILDDTTPSTNAYVVYSTVQAARKAPAALNGTVVLDRHLRVDSVAHPSQIDHKR 323
Query: 140 SIFIGNIPF-----EAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEEL 194
+F+GN+ F + EE++ +K + G D + +G + F A +
Sbjct: 324 CVFVGNLDFVDNETDPEEDDKKKKKKKSGPAD-----------VEEGL-WRTFNAHTKGS 371
Query: 195 RKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 226
++ + G +++VR++RD+ T +GKGF YV F
Sbjct: 372 KERASTRGNVESVRVVRDRTTRVGKGFAYVQF 403
>sp|Q4IQW0|NOP12_GIBZE Nucleolar protein 12 OS=Gibberella zeae (strain PH-1 / ATCC
MYA-4620 / FGSC 9075 / NRRL 31084) GN=NOP12 PE=3 SV=1
Length = 559
Score = 66.6 bits (161), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 78/156 (50%), Gaps = 29/156 (18%)
Query: 60 PYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRT-NMNAYVRF-KNLESVEKALEMNG 117
P +E++RFRSV A +LP++A + + T + NAYV + + A ++NG
Sbjct: 246 PPQTIESLRFRSVAFAGGSLPKRAAYITKSLMDSTTKSANAYVVYSTTAAARTAATKLNG 305
Query: 118 -HVIDEHTIRVDK-ALTTTKSNSHSIFIGNIPF---------EAE--------------- 151
V+D H +RVD A + + +F+GN+ F AE
Sbjct: 306 TQVLDRH-LRVDSVAHPSPTDHRRCVFVGNLGFVDDETVLNTNAEGDTTEKKKNKTPSDI 364
Query: 152 EEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 187
EE L + F + G+++NVR++RD T +GKGF YV F
Sbjct: 365 EEGLWRTFSTQGKVENVRVVRDSKTRVGKGFAYVQF 400
>sp|Q8R3C6|RBM19_MOUSE Probable RNA-binding protein 19 OS=Mus musculus GN=Rbm19 PE=1 SV=1
Length = 952
Score = 61.6 bits (148), Expect = 5e-09, Method: Composition-based stats.
Identities = 39/118 (33%), Positives = 64/118 (54%), Gaps = 17/118 (14%)
Query: 99 AYVRFKNLESVEKAL-EMNGHVIDEHTIRV-------DKALTTT-------KSNSHSIFI 143
+V +K E +KAL ++ GH +D H + V ALT+T K + I +
Sbjct: 769 GFVEYKKPEQAQKALKQLQGHTVDGHKLEVRISERATKPALTSTRKKQVPKKQTTSKILV 828
Query: 144 GNIPFEAEEEELRKAFESCGEIDNVRLIRDQH-TNIGKGFGYVNFKAEEEELRKAFES 200
NIPF+A + E+R+ F + GE+ VRL + T +GFG+V+F +++ +KAF +
Sbjct: 829 RNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDA-KKAFNA 885
Score = 38.5 bits (88), Expect = 0.042, Method: Composition-based stats.
Identities = 22/84 (26%), Positives = 41/84 (48%)
Query: 136 SNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELR 195
++S +F+ N+ + + EE+L K F + G + + D T KGF +V F E ++
Sbjct: 397 ADSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVK 456
Query: 196 KAFESCGEIDNVRLIRDQHTNIGK 219
E G++ R++ + I K
Sbjct: 457 AYAEVDGQVFQGRMLHVLPSTIKK 480
Score = 31.6 bits (70), Expect = 5.4, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 5/54 (9%)
Query: 141 IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGK--GFGYVNFKAEEE 192
+ + N+P +EE R+ F + G + + L + T GK FG++ FK+EEE
Sbjct: 4 LIVKNLPNGMKEERFRQLFAAFGTLTDCSL---KFTKDGKFRKFGFIGFKSEEE 54
>sp|A7VJC2|ROA2_RAT Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Rattus norvegicus
GN=Hnrnpa2b1 PE=1 SV=1
Length = 353
Score = 61.2 bits (147), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 55/111 (49%), Gaps = 7/111 (6%)
Query: 84 CIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALT---TTKSNSH- 139
C+ M KR+ +V F ++ V+ A+ H ID + +A+ + K +H
Sbjct: 50 CVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHV 109
Query: 140 ---SIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 187
+F+G I + EE LR FE G+ID + +I D+ + +GFG+V F
Sbjct: 110 TVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTF 160
Score = 51.2 bits (121), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 53/138 (38%), Gaps = 52/138 (37%)
Query: 141 IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKA----------- 189
+FIG + FE EE LR +E G++ + ++RD + +GFG+V F +
Sbjct: 23 LFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAAR 82
Query: 190 -----------------------------------------EEEELRKAFESCGEIDNVR 208
EE LR FE G+ID +
Sbjct: 83 PHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIE 142
Query: 209 LIRDQHTNIGKGFGYVNF 226
+I D+ + +GFG+V F
Sbjct: 143 IITDRQSGKKRGFGFVTF 160
>sp|O88569|ROA2_MOUSE Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Mus musculus
GN=Hnrnpa2b1 PE=1 SV=2
Length = 353
Score = 61.2 bits (147), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 55/111 (49%), Gaps = 7/111 (6%)
Query: 84 CIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALT---TTKSNSH- 139
C+ M KR+ +V F ++ V+ A+ H ID + +A+ + K +H
Sbjct: 50 CVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHV 109
Query: 140 ---SIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 187
+F+G I + EE LR FE G+ID + +I D+ + +GFG+V F
Sbjct: 110 TVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTF 160
Score = 51.2 bits (121), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 53/138 (38%), Gaps = 52/138 (37%)
Query: 141 IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKA----------- 189
+FIG + FE EE LR +E G++ + ++RD + +GFG+V F +
Sbjct: 23 LFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAAR 82
Query: 190 -----------------------------------------EEEELRKAFESCGEIDNVR 208
EE LR FE G+ID +
Sbjct: 83 PHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIE 142
Query: 209 LIRDQHTNIGKGFGYVNF 226
+I D+ + +GFG+V F
Sbjct: 143 IITDRQSGKKRGFGFVTF 160
>sp|P22626|ROA2_HUMAN Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Homo sapiens
GN=HNRNPA2B1 PE=1 SV=2
Length = 353
Score = 61.2 bits (147), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 55/111 (49%), Gaps = 7/111 (6%)
Query: 84 CIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALT---TTKSNSH- 139
C+ M KR+ +V F ++ V+ A+ H ID + +A+ + K +H
Sbjct: 50 CVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHV 109
Query: 140 ---SIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 187
+F+G I + EE LR FE G+ID + +I D+ + +GFG+V F
Sbjct: 110 TVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTF 160
Score = 51.2 bits (121), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 53/138 (38%), Gaps = 52/138 (37%)
Query: 141 IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKA----------- 189
+FIG + FE EE LR +E G++ + ++RD + +GFG+V F +
Sbjct: 23 LFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAAR 82
Query: 190 -----------------------------------------EEEELRKAFESCGEIDNVR 208
EE LR FE G+ID +
Sbjct: 83 PHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIE 142
Query: 209 LIRDQHTNIGKGFGYVNF 226
+I D+ + +GFG+V F
Sbjct: 143 IITDRQSGKKRGFGFVTF 160
>sp|Q5RBU8|ROA2_PONAB Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Pongo abelii
GN=HNRNPA2B1 PE=2 SV=1
Length = 353
Score = 61.2 bits (147), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 55/111 (49%), Gaps = 7/111 (6%)
Query: 84 CIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALT---TTKSNSH- 139
C+ M KR+ +V F ++ V+ A+ H ID + +A+ + K +H
Sbjct: 50 CVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHV 109
Query: 140 ---SIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 187
+F+G I + EE LR FE G+ID + +I D+ + +GFG+V F
Sbjct: 110 TVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTF 160
Score = 51.2 bits (121), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 53/138 (38%), Gaps = 52/138 (37%)
Query: 141 IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKA----------- 189
+FIG + FE EE LR +E G++ + ++RD + +GFG+V F +
Sbjct: 23 LFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAAR 82
Query: 190 -----------------------------------------EEEELRKAFESCGEIDNVR 208
EE LR FE G+ID +
Sbjct: 83 PHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIE 142
Query: 209 LIRDQHTNIGKGFGYVNF 226
+I D+ + +GFG+V F
Sbjct: 143 IITDRQSGKKRGFGFVTF 160
>sp|Q2HJ60|ROA2_BOVIN Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Bos taurus
GN=HNRNPA2B1 PE=2 SV=1
Length = 341
Score = 61.2 bits (147), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 55/111 (49%), Gaps = 7/111 (6%)
Query: 84 CIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALT---TTKSNSH- 139
C+ M KR+ +V F ++ V+ A+ H ID + +A+ + K +H
Sbjct: 38 CVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHV 97
Query: 140 ---SIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 187
+F+G I + EE LR FE G+ID + +I D+ + +GFG+V F
Sbjct: 98 TVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTF 148
Score = 50.8 bits (120), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 53/138 (38%), Gaps = 52/138 (37%)
Query: 141 IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKA----------- 189
+FIG + FE EE LR +E G++ + ++RD + +GFG+V F +
Sbjct: 11 LFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAAR 70
Query: 190 -----------------------------------------EEEELRKAFESCGEIDNVR 208
EE LR FE G+ID +
Sbjct: 71 PHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIE 130
Query: 209 LIRDQHTNIGKGFGYVNF 226
+I D+ + +GFG+V F
Sbjct: 131 IITDRQSGKKRGFGFVTF 148
>sp|Q99020|ROAA_MOUSE Heterogeneous nuclear ribonucleoprotein A/B OS=Mus musculus
GN=Hnrnpab PE=1 SV=1
Length = 285
Score = 60.8 bits (146), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 62/115 (53%), Gaps = 2/115 (1%)
Query: 85 IKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKSNSHSIFIG 144
IKM+ + R+ ++ FK+ SVEK L+ H +D I KA+ K IF+G
Sbjct: 106 IKMDP-NTGRSRGFGFILFKDSSSVEKVLDQKEHRLDGRVIDPKKAMAMKKDPVKKIFVG 164
Query: 145 NIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
+ EA EE++R+ F GEI+ + L D N +GF ++ FK EE+ ++K E
Sbjct: 165 GLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFK-EEDPVKKVLE 218
Score = 35.4 bits (80), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 28/141 (19%), Positives = 56/141 (39%), Gaps = 45/141 (31%)
Query: 132 TTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK--- 188
+ + ++ +F+G + ++ +++L+ F GE+ + + D +T +GFG++ FK
Sbjct: 68 SKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSS 127
Query: 189 ------------------------------------------AEEEELRKAFESCGEIDN 206
A EE++R+ F GEI+
Sbjct: 128 SVEKVLDQKEHRLDGRVIDPKKAMAMKKDPVKKIFVGGLNPEATEEKIREYFGQFGEIEA 187
Query: 207 VRLIRDQHTNIGKGFGYVNFK 227
+ L D N +GF ++ FK
Sbjct: 188 IELPIDPKLNKRRGFVFITFK 208
>sp|O43347|MSI1H_HUMAN RNA-binding protein Musashi homolog 1 OS=Homo sapiens GN=MSI1 PE=1
SV=1
Length = 362
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 59/115 (51%), Gaps = 5/115 (4%)
Query: 82 KACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVD-----KALTTTKS 136
K C+ M KR+ +V F + V+K L + H +D TI +A +
Sbjct: 47 KECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVT 106
Query: 137 NSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEE 191
+ IF+G + E++++ FE G++D+ L+ D+ TN +GFG+V F++E+
Sbjct: 107 RTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESED 161
Score = 47.8 bits (112), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 57/137 (41%), Gaps = 50/137 (36%)
Query: 141 IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF------------- 187
+FIG + ++ +E LR+ F GE+ ++RD T +GFG+V F
Sbjct: 22 MFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS 81
Query: 188 -----------------KAEE--------------------EELRKAFESCGEIDNVRLI 210
+A+ E++++ FE G++D+ L+
Sbjct: 82 RHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLM 141
Query: 211 RDQHTNIGKGFGYVNFK 227
D+ TN +GFG+V F+
Sbjct: 142 FDKTTNRHRGFGFVTFE 158
>sp|Q99729|ROAA_HUMAN Heterogeneous nuclear ribonucleoprotein A/B OS=Homo sapiens
GN=HNRNPAB PE=1 SV=2
Length = 332
Score = 58.9 bits (141), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 61/116 (52%), Gaps = 3/116 (2%)
Query: 85 IKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKSNSHSIFIG 144
IKM+ + R+ ++ FK+ SVEK L+ H +D I KA+ K IF+G
Sbjct: 100 IKMD-PNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKKAMAMKKDPVKKIFVG 158
Query: 145 NI-PFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
+ P EE++R+ F GEI+ + L D N +GF ++ FK EEE ++K E
Sbjct: 159 GLNPESPTEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFK-EEEPVKKVLE 213
Score = 33.9 bits (76), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/142 (19%), Positives = 55/142 (38%), Gaps = 46/142 (32%)
Query: 132 TTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK--- 188
+ + ++ +F+G + ++ +++L+ F GE+ + + D +T +GFG++ FK
Sbjct: 62 SKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAA 121
Query: 189 -------------------------------------------AEEEELRKAFESCGEID 205
EE++R+ F GEI+
Sbjct: 122 SVEKVLDQKEHRLDGRVIDPKKAMAMKKDPVKKIFVGGLNPESPTEEKIREYFGEFGEIE 181
Query: 206 NVRLIRDQHTNIGKGFGYVNFK 227
+ L D N +GF ++ FK
Sbjct: 182 AIELPMDPKLNKRRGFVFITFK 203
>sp|Q9TTV2|ROA2_SAGOE Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Saguinus oedipus
GN=HNRNPA2B1 PE=1 SV=1
Length = 341
Score = 58.9 bits (141), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 54/111 (48%), Gaps = 7/111 (6%)
Query: 84 CIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALT---TTKSNSH- 139
C+ M KR+ +V F ++ V+ A+ H ID + +A+ + K +H
Sbjct: 38 CVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHV 97
Query: 140 ---SIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 187
+F+G I + EE LR F G+ID + +I D+ + +GFG+V F
Sbjct: 98 TVKKLFVGGIKEDTEEHHLRDYFAEYGKIDTIEIITDRQSGKKRGFGFVTF 148
Score = 47.8 bits (112), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 32/138 (23%), Positives = 52/138 (37%), Gaps = 52/138 (37%)
Query: 141 IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKA----------- 189
+FIG + F+ EE LR +E G++ + ++RD + +GFG+V F +
Sbjct: 11 LFIGGLSFQTTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAAR 70
Query: 190 -----------------------------------------EEEELRKAFESCGEIDNVR 208
EE LR F G+ID +
Sbjct: 71 PHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFAEYGKIDTIE 130
Query: 209 LIRDQHTNIGKGFGYVNF 226
+I D+ + +GFG+V F
Sbjct: 131 IITDRQSGKKRGFGFVTF 148
>sp|Q3SWU3|HNRDL_RAT Heterogeneous nuclear ribonucleoprotein D-like OS=Rattus norvegicus
GN=Hnrpdl PE=2 SV=1
Length = 322
Score = 58.5 bits (140), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 59/108 (54%), Gaps = 2/108 (1%)
Query: 94 RTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALT-TTKSNSHSIFIGNIPFEAEE 152
R+ +V FK+ SV+K LE+ H +D I +A K +F+G + + E
Sbjct: 90 RSRGFGFVLFKDAASVDKVLELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDTSE 149
Query: 153 EELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFES 200
E++++ F + GEI+N+ L D TN +GF ++ + +EE ++K ES
Sbjct: 150 EQIKEYFGAFGEIENIELPMDTKTNERRGFCFITY-TDEEPVKKLLES 196
Score = 35.0 bits (79), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 27/137 (19%), Positives = 54/137 (39%), Gaps = 46/137 (33%)
Query: 136 SNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK------- 188
++ + +FIG + ++ +++L + GE+ + + D T +GFG+V FK
Sbjct: 48 TSGNKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDK 107
Query: 189 ---------------------------------------AEEEELRKAFESCGEIDNVRL 209
EE++++ F + GEI+N+ L
Sbjct: 108 VLELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIEL 167
Query: 210 IRDQHTNIGKGFGYVNF 226
D TN +GF ++ +
Sbjct: 168 PMDTKTNERRGFCFITY 184
>sp|Q8K3P4|MSI1H_RAT RNA-binding protein Musashi homolog 1 OS=Rattus norvegicus GN=Msi1
PE=2 SV=1
Length = 362
Score = 58.5 bits (140), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 58/115 (50%), Gaps = 5/115 (4%)
Query: 82 KACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVD-----KALTTTKS 136
K C+ M KR+ +V F + V+K L + H +D TI +A +
Sbjct: 47 KECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVT 106
Query: 137 NSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEE 191
+ IF+G + E+++ FE G++D+ L+ D+ TN +GFG+V F++E+
Sbjct: 107 RTKKIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESED 161
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 56/137 (40%), Gaps = 50/137 (36%)
Query: 141 IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF------------- 187
+FIG + ++ +E LR+ F GE+ ++RD T +GFG+V F
Sbjct: 22 MFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS 81
Query: 188 -----------------KAEE--------------------EELRKAFESCGEIDNVRLI 210
+A+ E+++ FE G++D+ L+
Sbjct: 82 RHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLM 141
Query: 211 RDQHTNIGKGFGYVNFK 227
D+ TN +GFG+V F+
Sbjct: 142 FDKTTNRHRGFGFVTFE 158
>sp|Q61474|MSI1H_MOUSE RNA-binding protein Musashi homolog 1 OS=Mus musculus GN=Msi1 PE=1
SV=1
Length = 362
Score = 58.5 bits (140), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 58/115 (50%), Gaps = 5/115 (4%)
Query: 82 KACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVD-----KALTTTKS 136
K C+ M KR+ +V F + V+K L + H +D TI +A +
Sbjct: 47 KECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVT 106
Query: 137 NSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEE 191
+ IF+G + E+++ FE G++D+ L+ D+ TN +GFG+V F++E+
Sbjct: 107 RTKKIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESED 161
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/137 (22%), Positives = 54/137 (39%), Gaps = 50/137 (36%)
Query: 141 IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEE--------- 191
+FIG + ++ +E LR+ F GE+ ++RD T +GFG+V F +
Sbjct: 22 MFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS 81
Query: 192 -----------------------------------------EELRKAFESCGEIDNVRLI 210
E+++ FE G++D+ L+
Sbjct: 82 RHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLM 141
Query: 211 RDQHTNIGKGFGYVNFK 227
D+ TN +GFG+V F+
Sbjct: 142 FDKTTNRHRGFGFVTFE 158
>sp|P51989|RO21_XENLA Heterogeneous nuclear ribonucleoprotein A2 homolog 1 OS=Xenopus
laevis PE=2 SV=1
Length = 346
Score = 58.2 bits (139), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 55/111 (49%), Gaps = 7/111 (6%)
Query: 84 CIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALT---TTKSNSH- 139
C+ M KR+ +V F + V+ A+ H ID + +A+ + K +H
Sbjct: 38 CVVMRDPASKRSRGFGFVTFSCMNEVDAAMATRPHTIDGRVVEPKRAVAREESAKPGAHV 97
Query: 140 ---SIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 187
+F+G I + EE LR+ FE G+ID++ +I D+ + +GF +V F
Sbjct: 98 TVKKLFVGGIKEDTEEHHLREYFEEYGKIDSIEIITDKQSGKKRGFAFVTF 148
Score = 48.1 bits (113), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/138 (23%), Positives = 52/138 (37%), Gaps = 52/138 (37%)
Query: 141 IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKA----------- 189
+FIG + FE EE LR +E G + + ++RD + +GFG+V F
Sbjct: 11 LFIGGLSFETTEESLRNYYEQWGTLTDCVVMRDPASKRSRGFGFVTFSCMNEVDAAMATR 70
Query: 190 -----------------------------------------EEEELRKAFESCGEIDNVR 208
EE LR+ FE G+ID++
Sbjct: 71 PHTIDGRVVEPKRAVAREESAKPGAHVTVKKLFVGGIKEDTEEHHLREYFEEYGKIDSIE 130
Query: 209 LIRDQHTNIGKGFGYVNF 226
+I D+ + +GF +V F
Sbjct: 131 IITDKQSGKKRGFAFVTF 148
>sp|O14979|HNRDL_HUMAN Heterogeneous nuclear ribonucleoprotein D-like OS=Homo sapiens
GN=HNRPDL PE=1 SV=3
Length = 420
Score = 58.2 bits (139), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 59/108 (54%), Gaps = 2/108 (1%)
Query: 94 RTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALT-TTKSNSHSIFIGNIPFEAEE 152
R+ +V FK+ SV+K LE+ H +D I +A K +F+G + + E
Sbjct: 187 RSRGFGFVLFKDAASVDKVLELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDTSE 246
Query: 153 EELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFES 200
E++++ F + GEI+N+ L D TN +GF ++ + +EE ++K ES
Sbjct: 247 EQIKEYFGAFGEIENIELPMDTKTNERRGFCFITY-TDEEPVKKLLES 293
Score = 34.7 bits (78), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 27/132 (20%), Positives = 51/132 (38%), Gaps = 46/132 (34%)
Query: 141 IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK------------ 188
+FIG + ++ +++L + GE+ + + D T +GFG+V FK
Sbjct: 150 MFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLELK 209
Query: 189 ----------------------------------AEEEELRKAFESCGEIDNVRLIRDQH 214
EE++++ F + GEI+N+ L D
Sbjct: 210 EHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTK 269
Query: 215 TNIGKGFGYVNF 226
TN +GF ++ +
Sbjct: 270 TNERRGFCFITY 281
>sp|P51990|RO22_XENLA Heterogeneous nuclear ribonucleoprotein A2 homolog 2 OS=Xenopus
laevis PE=2 SV=1
Length = 358
Score = 57.8 bits (138), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 55/111 (49%), Gaps = 7/111 (6%)
Query: 84 CIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALT---TTKSNSH- 139
C+ M KR+ +V F + V+ A+ H ID + +A+ + K +H
Sbjct: 38 CVVMRDPASKRSRGFGFVTFSCMNEVDAAMSARPHTIDGRVVEPKRAVAREESAKPGAHV 97
Query: 140 ---SIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 187
+F+G I + EE LR+ FE G+I++ +I D+ + +GFG+V F
Sbjct: 98 TVKKLFVGGIKEDTEEHHLREYFEEYGKIESTEIITDKQSGKKRGFGFVTF 148
Score = 48.5 bits (114), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/138 (23%), Positives = 53/138 (38%), Gaps = 52/138 (37%)
Query: 141 IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKA----------- 189
+FIG + FE EE LR +E G++ + ++RD + +GFG+V F
Sbjct: 11 LFIGGLSFETTEESLRNFYEQWGQLTDCVVMRDPASKRSRGFGFVTFSCMNEVDAAMSAR 70
Query: 190 -----------------------------------------EEEELRKAFESCGEIDNVR 208
EE LR+ FE G+I++
Sbjct: 71 PHTIDGRVVEPKRAVAREESAKPGAHVTVKKLFVGGIKEDTEEHHLREYFEEYGKIESTE 130
Query: 209 LIRDQHTNIGKGFGYVNF 226
+I D+ + +GFG+V F
Sbjct: 131 IITDKQSGKKRGFGFVTF 148
>sp|Q7ZX83|HNDLA_XENLA Heterogeneous nuclear ribonucleoprotein D-like-A OS=Xenopus laevis
GN=hnrpdl-a PE=2 SV=1
Length = 293
Score = 57.8 bits (138), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 57/108 (52%), Gaps = 2/108 (1%)
Query: 94 RTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALT-TTKSNSHSIFIGNIPFEAEE 152
R+ +V FK+ SV+K LE N H +D I +A K +F+G + E E
Sbjct: 65 RSRGFGFVLFKDAVSVDKVLETNEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPETTE 124
Query: 153 EELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFES 200
E++++ F GEI+N+ L D TN +GF +V + EE ++K ES
Sbjct: 125 EQIKQYFGGFGEIENIELPIDTKTNERRGFCFVTYTG-EEPVKKLLES 171
Score = 32.3 bits (72), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 28/138 (20%), Positives = 52/138 (37%), Gaps = 46/138 (33%)
Query: 135 KSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK------ 188
+ + +FIG + ++ +++L + GE+ + + D T +GFG+V FK
Sbjct: 22 QQDEGKMFIGGLSWDTSKKDLTEYLSRFGEVLDCTIKTDPVTGRSRGFGFVLFKDAVSVD 81
Query: 189 ----------------------------------------AEEEELRKAFESCGEIDNVR 208
EE++++ F GEI+N+
Sbjct: 82 KVLETNEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPETTEEQIKQYFGGFGEIENIE 141
Query: 209 LIRDQHTNIGKGFGYVNF 226
L D TN +GF +V +
Sbjct: 142 LPIDTKTNERRGFCFVTY 159
>sp|Q5ZI72|HNRDL_CHICK Heterogeneous nuclear ribonucleoprotein D-like OS=Gallus gallus
GN=HNRPDL PE=2 SV=1
Length = 301
Score = 57.4 bits (137), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 59/108 (54%), Gaps = 2/108 (1%)
Query: 94 RTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALT-TTKSNSHSIFIGNIPFEAEE 152
R+ +V FK+ SVEK LE+ H +D I +A K +F+G + + E
Sbjct: 69 RSRGFGFVLFKDAASVEKVLELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDTSE 128
Query: 153 EELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFES 200
E++++ F + GEI+N+ L D TN +GF ++ + +EE ++K ES
Sbjct: 129 EQIKEYFGAFGEIENIELPMDTKTNERRGFCFITY-TDEEPVKKLLES 175
Score = 33.9 bits (76), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 33/164 (20%), Positives = 63/164 (38%), Gaps = 47/164 (28%)
Query: 109 VEKALEMNGHVIDEHTIRVDKALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNV 168
+E A EM+G +E + + + +FIG + ++ +++L + GE+ +
Sbjct: 1 MEDATEMSGGA-EEFAEGSKINASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDC 59
Query: 169 RLIRDQHTNIGKGFGYVNFK---------------------------------------- 188
+ D T +GFG+V FK
Sbjct: 60 TIKTDPVTGRSRGFGFVLFKDAASVEKVLELKEHKLDGKLIDPKRAKALKGKEPPKKVFV 119
Query: 189 ------AEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 226
EE++++ F + GEI+N+ L D TN +GF ++ +
Sbjct: 120 GGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITY 163
>sp|Q6NU14|HNDLB_XENLA Heterogeneous nuclear ribonucleoprotein D-like-B OS=Xenopus laevis
GN=hnrpdl-b PE=2 SV=1
Length = 291
Score = 57.4 bits (137), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 57/108 (52%), Gaps = 2/108 (1%)
Query: 94 RTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALT-TTKSNSHSIFIGNIPFEAEE 152
R+ +V FK+ SV+K LE H +D I +A K +F+G + E E
Sbjct: 73 RSRGFGFVLFKDAVSVDKVLETKEHKLDGKLIDPKRAKALQGKEPPKKVFVGGLSPETTE 132
Query: 153 EELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFES 200
E++++ F GEI+N+ L D TN +GF +V + +EE ++K ES
Sbjct: 133 EQIKQYFGGFGEIENIELPMDTKTNERRGFCFVTY-TDEEPVQKLLES 179
Score = 34.7 bits (78), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 28/132 (21%), Positives = 50/132 (37%), Gaps = 46/132 (34%)
Query: 141 IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK------------ 188
+FIG + ++ +++L + GE+ + + D T +GFG+V FK
Sbjct: 36 MFIGGLSWDTSKKDLTEYLSRFGEVLDCTIKTDPVTGRSRGFGFVLFKDAVSVDKVLETK 95
Query: 189 ----------------------------------AEEEELRKAFESCGEIDNVRLIRDQH 214
EE++++ F GEI+N+ L D
Sbjct: 96 EHKLDGKLIDPKRAKALQGKEPPKKVFVGGLSPETTEEQIKQYFGGFGEIENIELPMDTK 155
Query: 215 TNIGKGFGYVNF 226
TN +GF +V +
Sbjct: 156 TNERRGFCFVTY 167
>sp|Q9Y4C8|RBM19_HUMAN Probable RNA-binding protein 19 OS=Homo sapiens GN=RBM19 PE=1 SV=3
Length = 960
Score = 57.0 bits (136), Expect = 1e-07, Method: Composition-based stats.
Identities = 35/118 (29%), Positives = 60/118 (50%), Gaps = 17/118 (14%)
Query: 99 AYVRFKNLESVEKAL-EMNGHVIDEHTIRVD--------------KALTTTKSNSHSIFI 143
+V ++ E +KAL ++ GHV+D H + V K K + I +
Sbjct: 777 GFVEYRKPEQAQKALKQLQGHVVDGHKLEVRISERATKPAVTLARKKQVPRKQTTSKILV 836
Query: 144 GNIPFEAEEEELRKAFESCGEIDNVRLIRDQH-TNIGKGFGYVNFKAEEEELRKAFES 200
NIPF+A E+R+ F + GE+ VRL + T +GFG+V+F +++ ++AF +
Sbjct: 837 RNIPFQAHSREIRELFSTFGELKTVRLPKKMTGTGTHRGFGFVDFLTKQDA-KRAFNA 893
Score = 43.5 bits (101), Expect = 0.001, Method: Composition-based stats.
Identities = 46/189 (24%), Positives = 74/189 (39%), Gaps = 36/189 (19%)
Query: 66 TVRFRSVP-------VADITLPRKACIKMNKVHEKRTNMNAY--VRFKNLESVEKALEMN 116
TV+ R P V + P K + + V N Y V F N E V++AL+ N
Sbjct: 295 TVKLRGAPFNVTEKNVMEFLAPLKP-VAIRIVRNAHGNKTGYIFVDFSNEEEVKQALKCN 353
Query: 117 GHVIDEHTIRV--DKALTTTK------------------------SNSHSIFIGNIPFEA 150
+ I V +K + TTK + S +F+ N+P+ +
Sbjct: 354 REYMGGRYIEVFREKNVPTTKGAPKNTTKSWQGRILGENEEEEDLAESGRLFVRNLPYTS 413
Query: 151 EEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLI 210
EE+L K F G + + D T KGF ++ F E ++ E G++ R++
Sbjct: 414 TEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFITFMFPEHAVKAYSEVDGQVFQGRML 473
Query: 211 RDQHTNIGK 219
+ I K
Sbjct: 474 HVLPSTIKK 482
Score = 33.1 bits (74), Expect = 1.8, Method: Composition-based stats.
Identities = 14/56 (25%), Positives = 32/56 (57%), Gaps = 3/56 (5%)
Query: 140 SIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTN---IGKGFGYVNFKAEEE 192
++FI N+ F+ EE+L++ F G + + + + ++ + GFG+V ++ E+
Sbjct: 731 TLFIKNLNFDTTEEKLKEVFSKVGTVKSCSISKKKNKAGVLLSMGFGFVEYRKPEQ 786
Score = 31.2 bits (69), Expect = 6.3, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 5/54 (9%)
Query: 141 IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGK--GFGYVNFKAEEE 192
+ + N+P +EE R+ F + G + + L + T GK FG++ FK+EEE
Sbjct: 4 LIVKNLPNGMKEERFRQLFAAFGTLTDCSL---KFTKDGKFRKFGFIGFKSEEE 54
>sp|Q9Z130|HNRDL_MOUSE Heterogeneous nuclear ribonucleoprotein D-like OS=Mus musculus
GN=Hnrpdl PE=1 SV=1
Length = 301
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 83/192 (43%), Gaps = 30/192 (15%)
Query: 21 MSKLKVFLNIWKMALKLKMNPSLTKSKNHAL-----------SSVTSMFKPYGEVETVRF 69
M + + NI + A K+N S + + + +T +GEV
Sbjct: 1 MEDMNEYSNIEEFAEGSKINASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTI 60
Query: 70 RSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDK 129
++ PV R+ +V FK+ SV+K LE+ H +D I +
Sbjct: 61 KTDPVT-----------------GRSRGFGFVLFKDAASVDKVLELKEHKLDGKLIDPKR 103
Query: 130 ALT-TTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK 188
A K +F+G + + EE++++ F + GEI+N+ L D TN +GF ++ +
Sbjct: 104 AKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITY- 162
Query: 189 AEEEELRKAFES 200
+EE ++K ES
Sbjct: 163 TDEEPVKKLLES 174
>sp|Q5BDC8|NOP12_EMENI Nucleolar protein 12 OS=Emericella nidulans (strain FGSC A4 / ATCC
38163 / CBS 112.46 / NRRL 194 / M139) GN=nop12 PE=3 SV=1
Length = 520
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 90/185 (48%), Gaps = 24/185 (12%)
Query: 51 LSSVTSMFKPYGEVETVRFRSVPVADI-TLPRKACIKMNKVHEKRT-NMNAYVRFKNLES 108
LS++ P+ +++++RFRS A +P++A ++H+ T + NAY + ++
Sbjct: 220 LSTLPESTGPH-KIDSIRFRSTAFASGGKIPKRAAFAKQEIHDDTTPSTNAYAVYSTAQA 278
Query: 109 VEKALE-MNGHVIDEHTIRVDKALTTTK-SNSHSIFIGNIPF-----EAEEEELRKAFES 161
+KA +NG V+ + +RVD K + +F+GN+ F EE E +K
Sbjct: 279 AKKAPAALNGTVVLDRHLRVDNVAHPAKVDHKRCVFVGNLDFIDNETGTEEGEKKKKNRP 338
Query: 162 CGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGF 221
+++ +G + F A + + G +++VR++RD+ T +GKGF
Sbjct: 339 PADVE-------------EGL-WRTFNAHTKASQSGPAGRGNVESVRVVRDRSTRVGKGF 384
Query: 222 GYVNF 226
YV F
Sbjct: 385 AYVQF 389
>sp|P27476|NSR1_YEAST Nuclear localization sequence-binding protein OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=NSR1 PE=1
SV=1
Length = 414
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 65/134 (48%), Gaps = 17/134 (12%)
Query: 94 RTNMNAYVRFKNLESVEKAL-EMNGHVIDEHTIRVDKALTTTKSN--------------S 138
R+ YV F+N EKA+ EM G ID I D + + N S
Sbjct: 207 RSRGYGYVDFENKSYAEKAIQEMQGKEIDGRPINCDMSTSKPAGNNDRAKKFGDTPSEPS 266
Query: 139 HSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAF 198
++F+GN+ F A+ + + + F GE+ +VR+ T KGFGYV F + E+ +KA
Sbjct: 267 DTLFLGNLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQF-SNMEDAKKAL 325
Query: 199 ESC-GEIDNVRLIR 211
++ GE + R +R
Sbjct: 326 DALQGEYIDNRPVR 339
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 33/49 (67%)
Query: 140 SIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK 188
+IF+G + + ++E L+K FE G + R+I ++ T+ +G+GYV+F+
Sbjct: 169 TIFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFE 217
Score = 36.6 bits (83), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 30/45 (66%)
Query: 183 GYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK 227
G +++ ++E L+K FE G + R+I ++ T+ +G+GYV+F+
Sbjct: 173 GRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFE 217
>sp|P41891|GAR2_SCHPO Protein gar2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=gar2 PE=1 SV=2
Length = 500
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 33/50 (66%)
Query: 138 SHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 187
S ++F+GN+ F A E++L AF CG+I ++RL D + KGFGYV F
Sbjct: 365 SDTVFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTF 414
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 28/44 (63%)
Query: 183 GYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 226
G ++F A E++L AF CG+I ++RL D + KGFGYV F
Sbjct: 371 GNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTF 414
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 31/52 (59%)
Query: 140 SIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEE 191
++F+G + + +++ L + FE G I R+I D + KG+GYV+F+ E
Sbjct: 264 TVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPE 315
Score = 35.8 bits (81), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 27/46 (58%)
Query: 183 GYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKV 228
G +++ +++ L + FE G I R+I D + KG+GYV+F+
Sbjct: 268 GRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFET 313
Score = 34.7 bits (78), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 34/81 (41%), Gaps = 17/81 (20%)
Query: 48 NHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLE 107
N +++ F G+++++R + P R YV F +++
Sbjct: 376 NATEDDLSTAFGGCGDIQSIRLPTDP-----------------QSGRLKGFGYVTFSDID 418
Query: 108 SVEKALEMNGHVIDEHTIRVD 128
S +K +EMNGH I R+D
Sbjct: 419 SAKKCVEMNGHFIAGRPCRLD 439
>sp|Q14103|HNRPD_HUMAN Heterogeneous nuclear ribonucleoprotein D0 OS=Homo sapiens
GN=HNRNPD PE=1 SV=1
Length = 355
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 60/111 (54%), Gaps = 10/111 (9%)
Query: 94 RTNMNAYVRFKNLESVEKALE-----MNGHVIDEHTIRVDKALTTTKSNSHSIFIGNIPF 148
R+ +V FK ESV+K ++ +NG VID + K TK IF+G +
Sbjct: 136 RSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMK----TKEPVKKIFVGGLSP 191
Query: 149 EAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
+ EE++R+ F GE++++ L D TN +GF ++ FK EEE ++K E
Sbjct: 192 DTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFK-EEEPVKKIME 241
Score = 38.5 bits (88), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 31/142 (21%), Positives = 54/142 (38%), Gaps = 46/142 (32%)
Query: 132 TTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK--- 188
T + +FIG + ++ +++L+ F GE+ + L D T +GFG+V FK
Sbjct: 90 ATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESE 149
Query: 189 -------------------------------------------AEEEELRKAFESCGEID 205
EE++R+ F GE++
Sbjct: 150 SVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVE 209
Query: 206 NVRLIRDQHTNIGKGFGYVNFK 227
++ L D TN +GF ++ FK
Sbjct: 210 SIELPMDNKTNKRRGFCFITFK 231
>sp|Q5B630|PABP_EMENI Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 /
CBS 112.46 / NRRL 194 / M139) GN=pab1 PE=2 SV=2
Length = 732
Score = 55.8 bits (133), Expect = 2e-07, Method: Composition-based stats.
Identities = 38/132 (28%), Positives = 65/132 (49%), Gaps = 16/132 (12%)
Query: 99 AYVRFKNLESVEKALE-MNGHVIDEHTIRVDKALTTT---------KSNSHSIFIGNIPF 148
+V ++ E+ A++ +NG ++++ + V ++ K+N +I+I NI
Sbjct: 173 GFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNIYIKNIDP 232
Query: 149 EAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVR 208
E E+EE RK FE GEI + L RD +GFG+VNF E ++ E N +
Sbjct: 233 EVEDEEFRKLFEKFGEITSATLSRDSEGK-SRGFGFVNFSTHESA-----QAAVEEMNDK 286
Query: 209 LIRDQHTNIGKG 220
+R Q +G+
Sbjct: 287 EVRSQKLYVGRA 298
Score = 41.6 bits (96), Expect = 0.005, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 35/61 (57%)
Query: 127 VDKALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVN 186
V+ TT++ +S S+++G + E L + F S G++ ++R+ RD T G+ YVN
Sbjct: 30 VEAPATTSQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVN 89
Query: 187 F 187
+
Sbjct: 90 Y 90
>sp|Q60668|HNRPD_MOUSE Heterogeneous nuclear ribonucleoprotein D0 OS=Mus musculus
GN=Hnrnpd PE=1 SV=2
Length = 355
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 60/111 (54%), Gaps = 10/111 (9%)
Query: 94 RTNMNAYVRFKNLESVEKALE-----MNGHVIDEHTIRVDKALTTTKSNSHSIFIGNIPF 148
R+ +V FK ESV+K ++ +NG VID + K TK IF+G +
Sbjct: 136 RSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMK----TKEPVKKIFVGGLSP 191
Query: 149 EAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
+ EE++R+ F GE++++ L D TN +GF ++ FK EEE ++K E
Sbjct: 192 DTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFK-EEEPVKKIME 241
Score = 37.7 bits (86), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 30/133 (22%), Positives = 52/133 (39%), Gaps = 46/133 (34%)
Query: 141 IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK------------ 188
+FIG + ++ +++L+ F GE+ + L D T +GFG+V FK
Sbjct: 99 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 158
Query: 189 ----------------------------------AEEEELRKAFESCGEIDNVRLIRDQH 214
EE++R+ F GE++++ L D
Sbjct: 159 EHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNK 218
Query: 215 TNIGKGFGYVNFK 227
TN +GF ++ FK
Sbjct: 219 TNKRRGFCFITFK 231
>sp|A4QUF0|PABP_MAGO7 Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 /
FGSC 8958) GN=PAB1 PE=3 SV=1
Length = 762
Score = 55.8 bits (133), Expect = 2e-07, Method: Composition-based stats.
Identities = 30/104 (28%), Positives = 55/104 (52%), Gaps = 10/104 (9%)
Query: 99 AYVRFKNLESVEKALE-MNGHVIDEHTIRV---------DKALTTTKSNSHSIFIGNIPF 148
+V ++ E+ +A++ +NG +++E + V K+N +I++ NI
Sbjct: 192 GFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFDEMKANFTNIYVKNINP 251
Query: 149 EAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEE 192
E ++E R FE G++ + L RDQ T +GFG+VNF + E+
Sbjct: 252 EVTDDEFRTLFEKYGDVTSSSLARDQETGKSRGFGFVNFTSHED 295
Score = 41.6 bits (96), Expect = 0.005, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 26/42 (61%)
Query: 185 VNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 226
+N + ++E R FE G++ + L RDQ T +GFG+VNF
Sbjct: 249 INPEVTDDEFRTLFEKYGDVTSSSLARDQETGKSRGFGFVNF 290
>sp|Q9JJ54|HNRPD_RAT Heterogeneous nuclear ribonucleoprotein D0 OS=Rattus norvegicus
GN=Hnrnpd PE=1 SV=1
Length = 353
Score = 55.8 bits (133), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 60/111 (54%), Gaps = 10/111 (9%)
Query: 94 RTNMNAYVRFKNLESVEKALE-----MNGHVIDEHTIRVDKALTTTKSNSHSIFIGNIPF 148
R+ +V FK ESV+K ++ +NG VID + K TK IF+G +
Sbjct: 134 RSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMK----TKEPVKKIFVGGLSP 189
Query: 149 EAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
+ EE++R+ F GE++++ L D TN +GF ++ FK EEE ++K E
Sbjct: 190 DTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFK-EEEPVKKIME 239
Score = 37.0 bits (84), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/142 (21%), Positives = 54/142 (38%), Gaps = 46/142 (32%)
Query: 132 TTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK--- 188
T + +FIG + ++ +++L+ F G++ + L D T +GFG+V FK
Sbjct: 88 ATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESE 147
Query: 189 -------------------------------------------AEEEELRKAFESCGEID 205
EE++R+ F GE++
Sbjct: 148 SVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVE 207
Query: 206 NVRLIRDQHTNIGKGFGYVNFK 227
++ L D TN +GF ++ FK
Sbjct: 208 SIELPMDNKTNKRRGFCFITFK 229
>sp|Q8HXM1|CSTF2_BOVIN Cleavage stimulation factor subunit 2 OS=Bos taurus GN=CSTF2 PE=2
SV=1
Length = 572
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 44/74 (59%), Gaps = 10/74 (13%)
Query: 124 TIR---VDKALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGK 180
T+R VD++L S+F+GNIP+EA EE+L+ F G + + RL+ D+ T K
Sbjct: 5 TVRDPAVDRSL-------RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPK 57
Query: 181 GFGYVNFKAEEEEL 194
G+G+ ++ +E L
Sbjct: 58 GYGFCEYQDQETAL 71
Score = 41.6 bits (96), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 32/55 (58%)
Query: 182 FGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKVSFTTLSSI 236
G + ++A EE+L+ F G + + RL+ D+ T KG+G+ ++ T LS++
Sbjct: 20 VGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAM 74
>sp|Q6URK4|ROA3_RAT Heterogeneous nuclear ribonucleoprotein A3 OS=Rattus norvegicus
GN=Hnrnpa3 PE=1 SV=1
Length = 379
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 55/111 (49%), Gaps = 7/111 (6%)
Query: 84 CIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALT---TTKSNSH- 139
C+ M KR+ +V + +E V+ A+ H +D + +A++ + K +H
Sbjct: 64 CVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHL 123
Query: 140 ---SIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 187
IF+G I + EE LR FE G+I+ + ++ D+ + +GF +V F
Sbjct: 124 TVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTF 174
Score = 44.7 bits (104), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/138 (21%), Positives = 51/138 (36%), Gaps = 52/138 (37%)
Query: 141 IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKA----------- 189
+FIG + FE ++ LR+ FE G + + ++RD T +GFG+V +
Sbjct: 37 LFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCAR 96
Query: 190 -----------------------------------------EEEELRKAFESCGEIDNVR 208
EE LR FE G+I+ +
Sbjct: 97 PHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIE 156
Query: 209 LIRDQHTNIGKGFGYVNF 226
++ D+ + +GF +V F
Sbjct: 157 VMEDRQSGKKRGFAFVTF 174
>sp|Q8BG05|ROA3_MOUSE Heterogeneous nuclear ribonucleoprotein A3 OS=Mus musculus
GN=Hnrnpa3 PE=1 SV=1
Length = 379
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 55/111 (49%), Gaps = 7/111 (6%)
Query: 84 CIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALT---TTKSNSH- 139
C+ M KR+ +V + +E V+ A+ H +D + +A++ + K +H
Sbjct: 64 CVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHL 123
Query: 140 ---SIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 187
IF+G I + EE LR FE G+I+ + ++ D+ + +GF +V F
Sbjct: 124 TVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTF 174
Score = 44.7 bits (104), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/138 (21%), Positives = 51/138 (36%), Gaps = 52/138 (37%)
Query: 141 IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKA----------- 189
+FIG + FE ++ LR+ FE G + + ++RD T +GFG+V +
Sbjct: 37 LFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCAR 96
Query: 190 -----------------------------------------EEEELRKAFESCGEIDNVR 208
EE LR FE G+I+ +
Sbjct: 97 PHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIE 156
Query: 209 LIRDQHTNIGKGFGYVNF 226
++ D+ + +GF +V F
Sbjct: 157 VMEDRQSGKKRGFAFVTF 174
>sp|P51991|ROA3_HUMAN Heterogeneous nuclear ribonucleoprotein A3 OS=Homo sapiens
GN=HNRNPA3 PE=1 SV=2
Length = 378
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 55/111 (49%), Gaps = 7/111 (6%)
Query: 84 CIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALT---TTKSNSH- 139
C+ M KR+ +V + +E V+ A+ H +D + +A++ + K +H
Sbjct: 64 CVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHL 123
Query: 140 ---SIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 187
IF+G I + EE LR FE G+I+ + ++ D+ + +GF +V F
Sbjct: 124 TVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTF 174
Score = 44.7 bits (104), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/138 (21%), Positives = 51/138 (36%), Gaps = 52/138 (37%)
Query: 141 IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKA----------- 189
+FIG + FE ++ LR+ FE G + + ++RD T +GFG+V +
Sbjct: 37 LFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCAR 96
Query: 190 -----------------------------------------EEEELRKAFESCGEIDNVR 208
EE LR FE G+I+ +
Sbjct: 97 PHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIE 156
Query: 209 LIRDQHTNIGKGFGYVNF 226
++ D+ + +GF +V F
Sbjct: 157 VMEDRQSGKKRGFAFVTF 174
>sp|A2Q848|PABP_ASPNC Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513)
GN=pab1 PE=3 SV=1
Length = 731
Score = 55.5 bits (132), Expect = 4e-07, Method: Composition-based stats.
Identities = 36/132 (27%), Positives = 66/132 (50%), Gaps = 16/132 (12%)
Query: 99 AYVRFKNLESVEKALE-MNGHVIDEHTIRVDKALTTT---------KSNSHSIFIGNIPF 148
+V ++ E+ A++ +NG ++++ + V ++ K+N +++I N+
Sbjct: 185 GFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNLDS 244
Query: 149 EAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVR 208
E +++E RK FE GEI + L RDQ +GFG+VNF E ++ E N +
Sbjct: 245 EIDDDEFRKMFEKFGEITSATLSRDQEGK-SRGFGFVNFSTHESA-----QAAVEEMNDK 298
Query: 209 LIRDQHTNIGKG 220
IR Q +G+
Sbjct: 299 EIRSQKLYVGRA 310
Score = 37.0 bits (84), Expect = 0.12, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 31/58 (53%)
Query: 130 ALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 187
A + +S S+++G + E L + F S G++ ++R+ RD T G+ YVN+
Sbjct: 45 APAANQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNY 102
Score = 30.8 bits (68), Expect = 9.0, Method: Composition-based stats.
Identities = 14/44 (31%), Positives = 24/44 (54%)
Query: 183 GYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 226
G ++ E L + F S G++ ++R+ RD T G+ YVN+
Sbjct: 59 GELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNY 102
>sp|Q8BIQ5|CSTF2_MOUSE Cleavage stimulation factor subunit 2 OS=Mus musculus GN=Cstf2 PE=1
SV=2
Length = 580
Score = 55.5 bits (132), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 41/68 (60%), Gaps = 7/68 (10%)
Query: 127 VDKALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVN 186
VD++L S+F+GNIP+EA EE+L+ F G + + RL+ D+ T KG+G+
Sbjct: 11 VDRSL-------RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCE 63
Query: 187 FKAEEEEL 194
++ +E L
Sbjct: 64 YQDQETAL 71
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 32/55 (58%)
Query: 182 FGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKVSFTTLSSI 236
G + ++A EE+L+ F G + + RL+ D+ T KG+G+ ++ T LS++
Sbjct: 20 VGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAM 74
>sp|P33240|CSTF2_HUMAN Cleavage stimulation factor subunit 2 OS=Homo sapiens GN=CSTF2 PE=1
SV=1
Length = 577
Score = 55.1 bits (131), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 44/74 (59%), Gaps = 10/74 (13%)
Query: 124 TIR---VDKALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGK 180
T+R VD++L S+F+GNIP+EA EE+L+ F G + + RL+ D+ T K
Sbjct: 5 TVRDPAVDRSL-------RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPK 57
Query: 181 GFGYVNFKAEEEEL 194
G+G+ ++ +E L
Sbjct: 58 GYGFCEYQDQETAL 71
Score = 41.2 bits (95), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 32/55 (58%)
Query: 182 FGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKVSFTTLSSI 236
G + ++A EE+L+ F G + + RL+ D+ T KG+G+ ++ T LS++
Sbjct: 20 VGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAM 74
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.133 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 81,781,786
Number of Sequences: 539616
Number of extensions: 3233993
Number of successful extensions: 12202
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 624
Number of HSP's successfully gapped in prelim test: 162
Number of HSP's that attempted gapping in prelim test: 9925
Number of HSP's gapped (non-prelim): 2258
length of query: 239
length of database: 191,569,459
effective HSP length: 114
effective length of query: 125
effective length of database: 130,053,235
effective search space: 16256654375
effective search space used: 16256654375
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)