Query psy14193
Match_columns 239
No_of_seqs 244 out of 2250
Neff 9.1
Searched_HMMs 46136
Date Fri Aug 16 21:49:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14193.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14193hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 4.6E-33 9.9E-38 241.1 21.3 151 24-205 4-156 (352)
2 KOG0145|consensus 100.0 3E-32 6.5E-37 215.7 14.9 170 52-238 56-339 (360)
3 KOG0148|consensus 100.0 6.9E-32 1.5E-36 214.6 15.1 141 52-215 77-235 (321)
4 TIGR01659 sex-lethal sex-letha 100.0 7E-31 1.5E-35 224.9 17.5 163 22-215 106-272 (346)
5 TIGR01628 PABP-1234 polyadenyl 100.0 1.2E-30 2.7E-35 238.7 19.7 181 25-237 2-237 (562)
6 TIGR01622 SF-CC1 splicing fact 100.0 1.5E-29 3.3E-34 226.3 20.5 162 22-214 88-262 (457)
7 TIGR01628 PABP-1234 polyadenyl 100.0 1.4E-29 3E-34 231.8 20.3 211 9-238 55-345 (562)
8 TIGR01645 half-pint poly-U bin 100.0 8.6E-30 1.9E-34 229.3 16.9 147 52-215 122-281 (612)
9 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 2.2E-29 4.7E-34 218.1 18.5 189 10-215 59-346 (352)
10 KOG0117|consensus 100.0 5E-28 1.1E-32 204.2 17.1 181 22-238 82-312 (506)
11 TIGR01642 U2AF_lg U2 snRNP aux 100.0 2.8E-27 6.1E-32 214.3 20.2 167 21-212 173-369 (509)
12 TIGR01648 hnRNP-R-Q heterogene 99.9 1E-26 2.2E-31 209.1 17.4 163 52-237 73-287 (578)
13 KOG0123|consensus 99.9 1.8E-26 4E-31 198.7 16.7 159 52-237 13-226 (369)
14 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.9 4.5E-25 9.8E-30 198.2 20.0 177 11-213 53-346 (481)
15 KOG0123|consensus 99.9 3.1E-25 6.8E-30 191.1 15.9 205 11-238 52-330 (369)
16 KOG0145|consensus 99.9 2.1E-25 4.4E-30 177.0 13.0 189 9-214 96-354 (360)
17 KOG0131|consensus 99.9 1.3E-25 2.7E-30 169.5 10.1 163 22-215 8-174 (203)
18 KOG0144|consensus 99.9 1.6E-25 3.4E-30 188.4 9.2 136 51-204 48-189 (510)
19 KOG0127|consensus 99.9 1E-23 2.2E-28 182.1 14.9 186 11-214 62-374 (678)
20 KOG0124|consensus 99.9 6.9E-24 1.5E-28 175.4 11.4 145 52-213 128-285 (544)
21 TIGR01648 hnRNP-R-Q heterogene 99.9 1.8E-22 3.8E-27 181.8 16.8 181 9-216 112-305 (578)
22 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.9 2.3E-22 5.1E-27 180.7 17.2 151 24-215 3-171 (481)
23 TIGR01642 U2AF_lg U2 snRNP aux 99.9 4.6E-22 1E-26 180.3 16.9 160 24-214 296-498 (509)
24 KOG0127|consensus 99.9 2.3E-22 5E-27 173.8 13.6 163 21-215 3-193 (678)
25 KOG0117|consensus 99.9 1.8E-22 3.9E-27 170.8 12.6 181 8-215 137-328 (506)
26 KOG0148|consensus 99.9 1.7E-21 3.8E-26 155.4 11.9 150 23-237 6-218 (321)
27 KOG0109|consensus 99.9 5.8E-22 1.3E-26 159.6 7.9 143 25-215 4-147 (346)
28 KOG0146|consensus 99.9 9.4E-22 2E-26 156.8 9.0 162 22-215 18-362 (371)
29 TIGR01622 SF-CC1 splicing fact 99.9 1.7E-20 3.7E-25 167.9 17.8 178 15-213 149-443 (457)
30 KOG0147|consensus 99.9 1.4E-21 3E-26 169.4 8.8 145 52-213 194-353 (549)
31 KOG0144|consensus 99.9 1.6E-21 3.6E-26 164.4 8.8 78 138-215 424-501 (510)
32 KOG4205|consensus 99.8 1.1E-20 2.4E-25 158.1 8.8 159 22-212 5-170 (311)
33 TIGR01659 sex-lethal sex-letha 99.8 3.4E-19 7.4E-24 152.9 13.8 101 137-237 106-253 (346)
34 KOG0110|consensus 99.8 9.7E-20 2.1E-24 162.0 10.6 151 52-216 530-691 (725)
35 TIGR01645 half-pint poly-U bin 99.8 1.5E-18 3.2E-23 157.0 12.9 101 138-238 107-265 (612)
36 PLN03134 glycine-rich RNA-bind 99.7 5.1E-17 1.1E-21 123.0 10.4 79 137-215 33-111 (144)
37 KOG0147|consensus 99.7 2.1E-16 4.4E-21 137.5 11.7 183 8-212 232-522 (549)
38 KOG0124|consensus 99.7 1.6E-16 3.5E-21 132.0 10.2 185 12-213 171-530 (544)
39 KOG0110|consensus 99.7 4.2E-16 9.1E-21 139.0 12.7 163 52-237 400-673 (725)
40 KOG0105|consensus 99.7 2.1E-15 4.7E-20 114.6 12.4 143 22-205 5-175 (241)
41 PF00076 RRM_1: RNA recognitio 99.7 7.8E-16 1.7E-20 101.9 8.9 70 141-211 1-70 (70)
42 KOG4206|consensus 99.6 6.9E-15 1.5E-19 115.5 13.3 156 22-213 9-217 (221)
43 KOG0131|consensus 99.6 9.2E-16 2E-20 116.3 6.6 101 138-238 9-158 (203)
44 KOG0125|consensus 99.6 8.1E-15 1.8E-19 120.3 9.1 99 115-215 72-171 (376)
45 KOG0122|consensus 99.6 7.8E-15 1.7E-19 116.1 8.5 80 137-216 188-267 (270)
46 PF14259 RRM_6: RNA recognitio 99.6 2.2E-14 4.7E-19 95.2 9.1 70 141-211 1-70 (70)
47 KOG0121|consensus 99.6 1E-14 2.2E-19 104.5 6.5 78 138-215 36-113 (153)
48 PLN03134 glycine-rich RNA-bind 99.5 3.3E-14 7.1E-19 107.6 8.7 84 21-135 32-116 (144)
49 KOG0149|consensus 99.5 2.8E-14 6E-19 112.5 7.2 76 138-214 12-87 (247)
50 KOG0126|consensus 99.5 1.8E-15 3.9E-20 114.6 0.4 79 137-215 34-112 (219)
51 PLN03120 nucleic acid binding 99.5 1.3E-13 2.8E-18 112.0 9.1 74 138-215 4-77 (260)
52 KOG0106|consensus 99.5 5.8E-14 1.3E-18 111.2 5.7 145 25-216 3-169 (216)
53 KOG4211|consensus 99.5 7.9E-13 1.7E-17 114.1 13.0 138 52-211 25-175 (510)
54 KOG0113|consensus 99.5 2.3E-13 5E-18 110.6 8.6 78 137-214 100-177 (335)
55 KOG0107|consensus 99.5 1.6E-13 3.4E-18 103.6 7.0 73 138-215 10-82 (195)
56 smart00362 RRM_2 RNA recogniti 99.5 7.8E-13 1.7E-17 87.0 9.4 72 140-213 1-72 (72)
57 KOG4212|consensus 99.5 1.8E-12 4E-17 110.3 13.6 143 52-213 59-289 (608)
58 KOG4207|consensus 99.4 1.6E-13 3.5E-18 106.1 6.3 78 138-215 13-90 (256)
59 KOG1548|consensus 99.4 2.3E-12 5E-17 106.7 12.8 150 52-215 149-349 (382)
60 KOG0109|consensus 99.4 2.8E-13 6.1E-18 109.8 6.9 91 139-237 3-130 (346)
61 smart00360 RRM RNA recognition 99.4 1.3E-12 2.7E-17 85.6 8.3 70 143-212 1-70 (71)
62 KOG0146|consensus 99.4 9.1E-13 2E-17 105.7 8.3 76 122-198 2-78 (371)
63 PLN03213 repressor of silencin 99.4 1.8E-12 3.8E-17 112.0 8.9 75 138-216 10-86 (759)
64 KOG0122|consensus 99.4 1.8E-12 3.8E-17 102.8 7.4 67 50-133 202-269 (270)
65 KOG1457|consensus 99.4 6.9E-12 1.5E-16 98.3 10.5 136 52-207 49-275 (284)
66 COG0724 RNA-binding proteins ( 99.4 4.3E-12 9.3E-17 104.9 9.5 78 138-215 115-192 (306)
67 PLN03121 nucleic acid binding 99.3 4.7E-12 1E-16 101.4 9.1 73 138-214 5-77 (243)
68 KOG0111|consensus 99.3 6E-13 1.3E-17 103.9 3.9 79 138-216 10-88 (298)
69 KOG0108|consensus 99.3 2.8E-12 6.2E-17 112.1 7.7 78 139-216 19-96 (435)
70 KOG0149|consensus 99.3 1.5E-12 3.2E-17 102.8 5.3 78 24-132 13-90 (247)
71 cd00590 RRM RRM (RNA recogniti 99.3 1.9E-11 4.1E-16 80.7 9.7 73 140-213 1-73 (74)
72 KOG0130|consensus 99.3 4.1E-12 8.8E-17 92.0 6.2 78 137-214 71-148 (170)
73 smart00361 RRM_1 RNA recogniti 99.3 1.7E-11 3.7E-16 81.3 8.3 61 152-212 2-69 (70)
74 PF00076 RRM_1: RNA recognitio 99.3 1E-11 2.2E-16 81.9 6.5 57 52-126 13-70 (70)
75 PF13893 RRM_5: RNA recognitio 99.3 1.9E-11 4.1E-16 77.4 6.9 55 54-130 1-56 (56)
76 COG0724 RNA-binding proteins ( 99.3 4.6E-11 1E-15 98.7 11.1 138 23-191 115-278 (306)
77 smart00361 RRM_1 RNA recogniti 99.3 1.9E-11 4.1E-16 81.1 7.1 60 52-127 3-69 (70)
78 KOG0114|consensus 99.3 3.2E-11 6.8E-16 83.5 7.7 72 138-212 18-89 (124)
79 KOG4205|consensus 99.2 1.4E-11 3.1E-16 103.5 6.7 101 137-237 5-157 (311)
80 KOG1190|consensus 99.2 1.2E-10 2.5E-15 98.7 11.3 138 52-215 313-488 (492)
81 KOG0111|consensus 99.2 3.5E-11 7.5E-16 94.2 7.5 90 17-137 4-94 (298)
82 PLN03120 nucleic acid binding 99.2 4.1E-11 8.9E-16 97.5 8.0 80 22-135 3-82 (260)
83 KOG4207|consensus 99.2 1.4E-11 3.1E-16 95.4 4.5 65 52-133 28-93 (256)
84 KOG0120|consensus 99.2 5.9E-11 1.3E-15 104.7 8.8 144 52-212 304-486 (500)
85 KOG0121|consensus 99.2 2.6E-11 5.7E-16 87.1 5.2 63 52-131 51-114 (153)
86 KOG4212|consensus 99.2 3.2E-10 7E-15 96.8 12.5 71 138-213 536-606 (608)
87 KOG0120|consensus 99.2 2.9E-11 6.3E-16 106.6 6.3 139 93-231 220-382 (500)
88 KOG0125|consensus 99.2 3.2E-11 6.8E-16 99.5 5.7 66 50-134 109-175 (376)
89 KOG4208|consensus 99.2 8.5E-11 1.8E-15 91.2 6.6 77 137-213 48-125 (214)
90 PLN03121 nucleic acid binding 99.1 1.6E-10 3.5E-15 92.7 8.1 79 21-133 3-81 (243)
91 PF14259 RRM_6: RNA recognitio 99.1 2.5E-10 5.5E-15 75.4 7.5 57 52-126 13-70 (70)
92 KOG0105|consensus 99.1 1E-10 2.2E-15 89.3 6.1 76 137-215 5-80 (241)
93 KOG0107|consensus 99.1 9.2E-11 2E-15 88.8 5.4 78 22-135 9-87 (195)
94 KOG0226|consensus 99.1 1.5E-10 3.3E-15 92.4 6.2 123 93-215 137-267 (290)
95 PF13893 RRM_5: RNA recognitio 99.1 2.2E-10 4.9E-15 72.4 5.9 55 155-214 1-55 (56)
96 KOG0113|consensus 99.1 3.4E-10 7.5E-15 92.3 6.5 80 24-134 102-182 (335)
97 smart00360 RRM RNA recognition 99.1 7.2E-10 1.6E-14 72.2 6.8 61 51-128 10-71 (71)
98 KOG0126|consensus 99.0 3.2E-11 6.9E-16 91.7 0.1 65 52-133 50-115 (219)
99 KOG0415|consensus 99.0 4.5E-10 9.8E-15 93.6 6.4 80 137-216 238-317 (479)
100 KOG0130|consensus 99.0 3.6E-10 7.8E-15 82.0 4.9 67 52-135 87-154 (170)
101 KOG1190|consensus 99.0 7E-09 1.5E-13 88.1 11.7 136 52-214 165-369 (492)
102 PLN03213 repressor of silencin 99.0 1.2E-09 2.7E-14 94.7 6.6 122 21-184 8-145 (759)
103 smart00362 RRM_2 RNA recogniti 98.9 4.2E-09 9.1E-14 68.8 6.7 58 52-128 14-72 (72)
104 KOG0129|consensus 98.9 4.4E-08 9.5E-13 85.6 13.7 157 17-199 253-432 (520)
105 KOG1365|consensus 98.9 2.6E-08 5.6E-13 84.1 10.9 106 92-198 98-224 (508)
106 KOG4211|consensus 98.9 2.1E-08 4.5E-13 87.1 10.3 96 138-236 10-162 (510)
107 KOG0108|consensus 98.8 5.1E-09 1.1E-13 91.9 6.3 81 24-135 19-100 (435)
108 KOG1456|consensus 98.8 7.1E-08 1.5E-12 81.2 12.7 132 52-207 303-474 (494)
109 KOG0128|consensus 98.8 2.2E-10 4.7E-15 104.8 -3.4 168 52-238 587-796 (881)
110 KOG0128|consensus 98.8 1.6E-09 3.5E-14 99.2 2.0 130 52-214 682-811 (881)
111 KOG0132|consensus 98.8 1.8E-08 3.9E-13 91.6 7.9 94 138-237 421-527 (894)
112 KOG4210|consensus 98.8 6.5E-09 1.4E-13 87.1 4.5 144 52-213 103-259 (285)
113 KOG4454|consensus 98.8 2.5E-09 5.5E-14 83.8 1.9 133 23-197 9-142 (267)
114 KOG4206|consensus 98.8 2E-08 4.4E-13 79.3 6.9 76 138-216 9-88 (221)
115 KOG4208|consensus 98.8 1.7E-08 3.7E-13 78.5 6.0 65 52-133 64-130 (214)
116 KOG0114|consensus 98.7 5.1E-08 1.1E-12 67.8 6.8 63 51-133 32-95 (124)
117 KOG1365|consensus 98.7 1.7E-08 3.7E-13 85.1 5.3 121 91-212 201-356 (508)
118 KOG0153|consensus 98.7 3.6E-08 7.9E-13 82.2 6.7 79 132-216 222-301 (377)
119 cd00590 RRM RRM (RNA recogniti 98.7 7.5E-08 1.6E-12 63.1 7.1 60 52-129 14-74 (74)
120 KOG0415|consensus 98.6 2.4E-08 5.3E-13 83.4 3.9 65 52-133 254-319 (479)
121 KOG4661|consensus 98.6 8.1E-08 1.8E-12 84.8 7.3 78 138-215 405-482 (940)
122 KOG0533|consensus 98.6 1.5E-07 3.2E-12 76.5 7.0 78 138-216 83-160 (243)
123 KOG4209|consensus 98.5 2E-07 4.3E-12 75.8 5.2 77 136-213 99-175 (231)
124 PF04059 RRM_2: RNA recognitio 98.5 1.2E-06 2.7E-11 61.2 8.4 68 139-206 2-71 (97)
125 KOG1456|consensus 98.5 4.8E-06 1E-10 70.4 13.1 176 14-216 87-361 (494)
126 KOG4661|consensus 98.4 4.2E-07 9.2E-12 80.4 6.6 89 14-133 396-485 (940)
127 KOG0129|consensus 98.4 1.7E-06 3.6E-11 75.9 9.7 98 138-237 259-431 (520)
128 KOG0116|consensus 98.4 4.6E-07 1E-11 79.3 6.3 75 138-213 288-362 (419)
129 KOG0153|consensus 98.4 7.5E-07 1.6E-11 74.5 6.1 60 52-134 243-304 (377)
130 KOG1548|consensus 98.4 1.4E-06 3E-11 72.9 7.1 77 138-215 134-218 (382)
131 KOG4660|consensus 98.2 8.7E-07 1.9E-11 78.3 3.3 71 137-212 74-144 (549)
132 KOG0226|consensus 98.2 1.2E-06 2.5E-11 70.5 3.2 63 52-131 205-268 (290)
133 KOG0106|consensus 98.2 1.8E-06 4E-11 68.8 4.2 69 139-215 2-70 (216)
134 KOG0112|consensus 98.2 1.2E-06 2.7E-11 81.2 3.4 131 52-207 387-518 (975)
135 PF11608 Limkain-b1: Limkain b 98.2 6.7E-06 1.5E-10 55.2 5.8 72 139-220 3-79 (90)
136 KOG0132|consensus 98.1 5.5E-06 1.2E-10 75.9 6.7 89 50-161 434-529 (894)
137 KOG4454|consensus 98.1 1.5E-06 3.3E-11 68.4 1.7 74 138-213 9-82 (267)
138 KOG0151|consensus 98.1 9.2E-06 2E-10 73.8 6.8 78 138-215 174-254 (877)
139 KOG4307|consensus 97.9 2.1E-05 4.7E-10 71.4 5.7 145 52-215 326-511 (944)
140 KOG4676|consensus 97.8 1.1E-05 2.4E-10 68.6 2.8 137 52-207 22-215 (479)
141 KOG1457|consensus 97.8 7.7E-05 1.7E-09 59.2 7.1 69 138-206 34-103 (284)
142 PF08777 RRM_3: RNA binding mo 97.8 6.8E-05 1.5E-09 53.5 5.8 56 139-200 2-57 (105)
143 KOG4209|consensus 97.8 4.4E-05 9.5E-10 62.2 5.4 65 52-133 116-180 (231)
144 PF11608 Limkain-b1: Limkain b 97.5 0.00028 6.1E-09 47.5 5.6 55 52-133 21-77 (90)
145 KOG0116|consensus 97.5 0.00014 3.1E-09 63.9 4.8 65 52-133 303-367 (419)
146 COG5175 MOT2 Transcriptional r 97.5 0.00027 5.8E-09 59.3 6.0 76 138-213 114-198 (480)
147 KOG0533|consensus 97.5 0.00029 6.4E-09 57.4 5.9 65 52-134 98-163 (243)
148 KOG0115|consensus 97.5 0.00035 7.5E-09 56.6 6.2 86 108-200 6-92 (275)
149 KOG0151|consensus 97.4 0.00024 5.1E-09 64.9 5.1 80 24-131 175-255 (877)
150 KOG2314|consensus 97.4 0.0006 1.3E-08 60.9 7.2 68 138-206 58-131 (698)
151 COG5175 MOT2 Transcriptional r 97.3 0.00022 4.7E-09 59.9 4.0 63 55-133 138-203 (480)
152 KOG1995|consensus 97.3 0.00019 4.2E-09 60.6 3.2 83 138-220 66-156 (351)
153 PF14605 Nup35_RRM_2: Nup53/35 97.3 0.00079 1.7E-08 41.7 5.1 52 139-197 2-53 (53)
154 KOG4660|consensus 97.3 0.00012 2.5E-09 65.1 1.7 114 52-194 90-227 (549)
155 KOG4307|consensus 97.3 0.00082 1.8E-08 61.4 6.9 75 138-213 867-942 (944)
156 KOG3152|consensus 97.3 0.00018 3.8E-09 58.2 2.4 73 137-209 73-157 (278)
157 PF14605 Nup35_RRM_2: Nup53/35 97.1 0.0008 1.7E-08 41.7 4.1 42 49-113 12-53 (53)
158 KOG2193|consensus 97.0 3.3E-05 7.1E-10 66.5 -4.1 112 96-212 37-151 (584)
159 KOG2202|consensus 97.0 0.00032 6.8E-09 56.8 1.3 64 52-133 83-148 (260)
160 KOG1996|consensus 96.9 0.0029 6.3E-08 52.3 6.4 61 152-212 300-361 (378)
161 KOG1855|consensus 96.9 0.00095 2.1E-08 57.8 3.8 77 136-212 229-318 (484)
162 KOG4849|consensus 96.9 0.00074 1.6E-08 57.0 2.8 75 138-212 80-156 (498)
163 KOG2314|consensus 96.9 0.0013 2.7E-08 58.9 4.2 60 52-129 79-140 (698)
164 PF08952 DUF1866: Domain of un 96.8 0.0044 9.5E-08 46.4 6.2 57 52-133 51-107 (146)
165 PF05172 Nup35_RRM: Nup53/35/4 96.8 0.0038 8.3E-08 44.0 5.5 70 52-131 20-90 (100)
166 KOG1995|consensus 96.8 0.0015 3.3E-08 55.3 4.0 74 52-134 81-155 (351)
167 KOG4210|consensus 96.6 0.0008 1.7E-08 56.6 1.2 101 137-237 87-245 (285)
168 KOG4676|consensus 96.6 0.0018 3.9E-08 55.5 3.0 91 139-230 8-104 (479)
169 PF05172 Nup35_RRM: Nup53/35/4 96.5 0.01 2.2E-07 41.9 5.8 71 138-210 6-83 (100)
170 PF04059 RRM_2: RNA recognitio 96.4 0.0078 1.7E-07 42.1 5.1 48 86-133 35-87 (97)
171 PF10309 DUF2414: Protein of u 96.2 0.035 7.6E-07 35.4 6.5 54 139-200 6-62 (62)
172 KOG1996|consensus 96.1 0.013 2.9E-07 48.5 5.6 64 52-131 301-365 (378)
173 PF08675 RNA_bind: RNA binding 96.1 0.058 1.3E-06 36.4 7.4 54 138-200 9-62 (87)
174 KOG0112|consensus 95.8 0.0023 4.9E-08 60.2 -0.2 100 138-238 372-510 (975)
175 PF08777 RRM_3: RNA binding mo 95.7 0.044 9.6E-07 39.0 6.3 42 52-116 16-58 (105)
176 KOG2135|consensus 95.5 0.0075 1.6E-07 53.0 1.8 60 52-134 388-447 (526)
177 KOG2416|consensus 95.4 0.032 6.9E-07 50.5 5.4 86 137-237 443-529 (718)
178 KOG2202|consensus 95.1 0.0087 1.9E-07 48.7 1.1 60 153-213 83-143 (260)
179 PF03467 Smg4_UPF3: Smg-4/UPF3 95.1 0.051 1.1E-06 42.5 5.2 68 138-205 7-80 (176)
180 KOG1855|consensus 95.0 0.023 5E-07 49.5 3.4 59 52-117 246-308 (484)
181 PF07292 NID: Nmi/IFP 35 domai 94.9 0.047 1E-06 37.4 4.1 62 99-160 1-74 (88)
182 PF08952 DUF1866: Domain of un 94.7 0.11 2.4E-06 39.0 5.9 54 153-215 51-104 (146)
183 KOG4285|consensus 94.6 0.087 1.9E-06 44.0 5.6 59 52-133 211-270 (350)
184 PF08675 RNA_bind: RNA binding 94.1 0.22 4.8E-06 33.6 5.7 46 46-116 17-63 (87)
185 KOG2591|consensus 93.9 0.3 6.6E-06 44.1 7.9 93 107-211 148-250 (684)
186 KOG3152|consensus 93.5 0.015 3.2E-07 47.3 -0.8 68 52-124 89-157 (278)
187 KOG2068|consensus 92.9 0.042 9E-07 46.5 0.9 75 138-212 77-157 (327)
188 KOG2193|consensus 92.7 0.12 2.6E-06 45.1 3.5 69 139-213 2-71 (584)
189 PF07576 BRAP2: BRCA1-associat 92.2 2.1 4.5E-05 30.7 8.8 65 139-205 14-79 (110)
190 PF15023 DUF4523: Protein of u 92.1 0.49 1.1E-05 35.4 5.5 57 52-132 105-161 (166)
191 KOG2068|consensus 90.3 0.17 3.7E-06 42.9 1.8 65 56-134 99-164 (327)
192 PF04847 Calcipressin: Calcipr 90.0 1 2.2E-05 35.4 5.9 59 52-133 10-71 (184)
193 PF14111 DUF4283: Domain of un 87.3 0.76 1.7E-05 34.5 3.5 76 96-171 55-138 (153)
194 PF15023 DUF4523: Protein of u 86.7 5.8 0.00013 29.8 7.6 74 133-214 81-158 (166)
195 KOG0804|consensus 86.7 2.2 4.8E-05 37.8 6.3 66 138-205 74-140 (493)
196 KOG0115|consensus 86.7 1.2 2.5E-05 36.6 4.3 80 13-114 11-90 (275)
197 KOG2253|consensus 84.6 0.79 1.7E-05 42.4 2.7 68 137-213 39-106 (668)
198 KOG4285|consensus 84.3 3.9 8.5E-05 34.4 6.4 66 138-211 197-262 (350)
199 KOG4849|consensus 84.2 0.75 1.6E-05 39.4 2.2 61 53-130 96-159 (498)
200 PF04847 Calcipressin: Calcipr 81.2 4.2 9.1E-05 32.0 5.3 59 151-215 8-68 (184)
201 PF11767 SET_assoc: Histone ly 78.3 7.8 0.00017 25.0 5.0 52 50-127 13-65 (66)
202 KOG2416|consensus 77.8 1.2 2.6E-05 40.8 1.4 56 52-130 459-519 (718)
203 PF11767 SET_assoc: Histone ly 75.5 19 0.00041 23.2 7.0 55 149-212 11-65 (66)
204 KOG2135|consensus 71.4 2.2 4.7E-05 38.1 1.3 72 139-217 373-445 (526)
205 PF11823 DUF3343: Protein of u 71.1 13 0.00027 24.3 4.8 47 182-229 3-49 (73)
206 KOG2591|consensus 70.8 5.8 0.00013 36.3 3.9 52 52-127 190-246 (684)
207 PF03880 DbpA: DbpA RNA bindin 69.1 14 0.00031 24.1 4.7 56 149-213 12-72 (74)
208 KOG4574|consensus 68.1 2.5 5.5E-05 40.4 1.1 62 138-205 298-359 (1007)
209 PF03880 DbpA: DbpA RNA bindin 64.9 9.3 0.0002 25.0 3.1 32 98-130 42-74 (74)
210 KOG4574|consensus 62.4 4.8 0.0001 38.6 1.8 60 52-134 313-375 (1007)
211 TIGR03636 L23_arch archaeal ri 59.6 47 0.001 22.1 5.7 58 140-200 15-74 (77)
212 PRK14548 50S ribosomal protein 56.1 55 0.0012 22.2 5.7 58 140-200 22-81 (84)
213 PF03468 XS: XS domain; Inter 55.6 32 0.0007 24.8 4.8 55 140-197 10-73 (116)
214 PF01071 GARS_A: Phosphoribosy 55.6 30 0.00065 27.5 5.0 51 183-238 19-69 (194)
215 TIGR02542 B_forsyth_147 Bacter 52.3 42 0.00091 24.2 4.8 45 147-191 83-130 (145)
216 PF02714 DUF221: Domain of unk 48.2 41 0.00088 28.6 5.2 56 99-161 1-57 (325)
217 COG1278 CspC Cold shock protei 48.1 8.4 0.00018 24.9 0.7 19 211-229 5-23 (67)
218 smart00596 PRE_C2HC PRE_C2HC d 45.7 34 0.00073 22.3 3.2 63 153-218 2-65 (69)
219 KOG4410|consensus 44.5 44 0.00094 28.2 4.4 47 138-190 330-377 (396)
220 PF15513 DUF4651: Domain of un 42.7 53 0.0012 20.9 3.7 18 153-170 9-26 (62)
221 KOG4483|consensus 39.9 1.1E+02 0.0023 27.2 6.3 67 138-212 391-458 (528)
222 PRK09937 stationary phase/star 39.6 16 0.00034 24.2 1.0 17 212-228 6-22 (74)
223 PRK14998 cold shock-like prote 39.0 16 0.00034 24.1 0.9 16 213-228 7-22 (73)
224 KOG4213|consensus 38.9 34 0.00073 26.8 2.8 46 52-115 124-169 (205)
225 KOG2891|consensus 38.4 15 0.00033 30.7 0.9 34 138-171 149-194 (445)
226 PRK15464 cold shock-like prote 37.9 14 0.00031 24.0 0.6 17 212-228 9-25 (70)
227 TIGR02381 cspD cold shock doma 36.9 18 0.00039 23.3 1.0 17 212-228 6-22 (68)
228 PF10567 Nab6_mRNP_bdg: RNA-re 36.5 69 0.0015 27.1 4.5 56 138-193 15-77 (309)
229 PRK01178 rps24e 30S ribosomal 36.3 1.3E+02 0.0029 21.0 5.3 22 10-31 3-24 (99)
230 PRK15463 cold shock-like prote 35.9 17 0.00038 23.6 0.8 16 213-228 10-25 (70)
231 PRK10943 cold shock-like prote 35.6 18 0.00038 23.5 0.7 14 215-228 11-24 (69)
232 COG5193 LHP1 La protein, small 35.3 18 0.0004 31.8 1.0 60 138-197 174-243 (438)
233 PF07530 PRE_C2HC: Associated 35.0 77 0.0017 20.5 3.7 57 153-209 2-61 (68)
234 PRK09507 cspE cold shock prote 35.0 19 0.00041 23.3 0.8 14 215-228 11-24 (69)
235 KOG0804|consensus 32.6 1.2E+02 0.0025 27.4 5.4 52 52-122 89-142 (493)
236 KOG1295|consensus 29.6 80 0.0017 27.7 3.9 68 138-205 7-77 (376)
237 PF03439 Spt5-NGN: Early trans 28.9 92 0.002 20.9 3.5 24 95-118 43-67 (84)
238 PRK10354 RNA chaperone/anti-te 28.9 27 0.00059 22.6 0.8 13 216-228 13-25 (70)
239 PRK09890 cold shock protein Cs 28.1 28 0.0006 22.6 0.7 14 216-229 13-26 (70)
240 PF08206 OB_RNB: Ribonuclease 27.6 45 0.00098 20.6 1.6 11 218-228 7-17 (58)
241 COG0445 GidA Flavin-dependent 27.1 2.8E+02 0.006 26.1 7.0 75 98-172 238-335 (621)
242 PF14714 KH_dom-like: KH-domai 25.2 2E+02 0.0043 19.1 4.5 58 110-167 12-76 (80)
243 PHA02531 20 portal vertex prot 22.7 95 0.0021 28.3 3.2 55 109-163 251-306 (514)
244 PF07576 BRAP2: BRCA1-associat 22.0 1.7E+02 0.0037 20.9 3.9 26 97-122 55-81 (110)
245 PTZ00191 60S ribosomal protein 21.3 3.6E+02 0.0077 20.4 5.6 56 140-198 83-140 (145)
246 KOG2253|consensus 21.0 48 0.001 31.1 1.1 52 52-129 55-107 (668)
247 PF10915 DUF2709: Protein of u 20.4 2.1E+02 0.0046 22.7 4.3 64 101-164 47-118 (238)
248 PTZ00071 40S ribosomal protein 20.3 3.2E+02 0.0069 20.3 5.1 22 10-31 8-29 (132)
249 PF11411 DNA_ligase_IV: DNA li 20.2 77 0.0017 17.8 1.4 15 149-163 20-34 (36)
No 1
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=100.00 E-value=4.6e-33 Score=241.08 Aligned_cols=151 Identities=23% Similarity=0.425 Sum_probs=134.4
Q ss_pred eeEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEEEe
Q psy14193 24 LKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRF 103 (239)
Q Consensus 24 ~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV~f 103 (239)
..|||+++......+ +|+++|++||+|.+|+ +++|+.+++++|||||+|
T Consensus 4 ~~l~V~nLp~~~~e~--------------~l~~~F~~~G~i~~v~-----------------i~~d~~~g~s~g~afV~f 52 (352)
T TIGR01661 4 TNLIVNYLPQTMTQE--------------EIRSLFTSIGEIESCK-----------------LVRDKVTGQSLGYGFVNY 52 (352)
T ss_pred cEEEEeCCCCCCCHH--------------HHHHHHHccCCEEEEE-----------------EEEcCCCCccceEEEEEE
Confidence 467888776554444 9999999999999998 467778899999999999
Q ss_pred CCHHHHHHHHH-hCCCccCCeeEEEeccCCCCCC-CCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCce
Q psy14193 104 KNLESVEKALE-MNGHVIDEHTIRVDKALTTTKS-NSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKG 181 (239)
Q Consensus 104 ~~~e~a~~Ai~-~~~~~l~g~~i~v~~~~~~~~~-~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg 181 (239)
.+.++|++|++ +|+..+.|+.|.|.++.+.... ..++|||+|||.++++++|+++|++||.|..+.++.+..++.++|
T Consensus 53 ~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g 132 (352)
T TIGR01661 53 VRPEDAEKAVNSLNGLRLQNKTIKVSYARPSSDSIKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKG 132 (352)
T ss_pred CcHHHHHHHHhhcccEEECCeeEEEEeecccccccccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCc
Confidence 99999999999 9999999999999998876643 377999999999999999999999999999999999988899999
Q ss_pred EEEEEecChHHHHHHHHHhCCcEe
Q psy14193 182 FGYVNFKAEEEELRKAFESCGEID 205 (239)
Q Consensus 182 ~~fV~F~~~e~a~~a~~~~~g~~~ 205 (239)
||||+|.+.++|..|+..+||..+
T Consensus 133 ~~fv~f~~~~~A~~ai~~l~g~~~ 156 (352)
T TIGR01661 133 VGFIRFDKRDEADRAIKTLNGTTP 156 (352)
T ss_pred EEEEEECCHHHHHHHHHHhCCCcc
Confidence 999999999999999987766543
No 2
>KOG0145|consensus
Probab=100.00 E-value=3e-32 Score=215.73 Aligned_cols=170 Identities=26% Similarity=0.447 Sum_probs=158.8
Q ss_pred HHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEEEeCCHHHHHHHHH-hCCCccCCeeEEEecc
Q psy14193 52 SSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALE-MNGHVIDEHTIRVDKA 130 (239)
Q Consensus 52 ~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV~f~~~e~a~~Ai~-~~~~~l~g~~i~v~~~ 130 (239)
++++++|+..|+|++|+ +++|+-+|.|.|||||.|-++++|++|+. +||..+..+.|+|.++
T Consensus 56 dE~rSLF~SiGeiEScK-----------------LvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyA 118 (360)
T KOG0145|consen 56 DELRSLFGSIGEIESCK-----------------LVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYA 118 (360)
T ss_pred HHHHHHhhcccceeeee-----------------eeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEec
Confidence 69999999999999998 57889999999999999999999999999 9999999999999999
Q ss_pred CCCCCCC-CcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCc------
Q psy14193 131 LTTTKSN-SHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGE------ 203 (239)
Q Consensus 131 ~~~~~~~-~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~------ 203 (239)
+|....- ..+|||.+||+.+|..+|.++|++||.|..-+++.|..||.++|.|||.|...++|..|+..+||.
T Consensus 119 RPSs~~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~t 198 (360)
T KOG0145|consen 119 RPSSDSIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCT 198 (360)
T ss_pred cCChhhhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCCCCCC
Confidence 9887643 789999999999999999999999999999999999999999999999999999999999755554
Q ss_pred --------------------------------------------------------------------------------
Q psy14193 204 -------------------------------------------------------------------------------- 203 (239)
Q Consensus 204 -------------------------------------------------------------------------------- 203 (239)
T Consensus 199 epItVKFannPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~~~~~g 278 (360)
T KOG0145|consen 199 EPITVKFANNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLPGGPGGG 278 (360)
T ss_pred CCeEEEecCCcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCccccccceeeeeccCCCCCCe
Confidence
Q ss_pred --------------------------EeeEEEEeeCCCCCCcceEEEEeCChHHHHhhhhc
Q psy14193 204 --------------------------IDNVRLIRDQHTNIGKGFGYVNFKVSFTTLSSIFS 238 (239)
Q Consensus 204 --------------------------~~~~r~l~~~~~~~~~G~~fv~f~~~~~a~~a~~~ 238 (239)
+...+++++..+++.+|||||...|-++|.+||.+
T Consensus 279 ~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~s 339 (360)
T KOG0145|consen 279 WCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIAS 339 (360)
T ss_pred eEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHH
Confidence 66899999999999999999999999999999975
No 3
>KOG0148|consensus
Probab=99.98 E-value=6.9e-32 Score=214.60 Aligned_cols=141 Identities=26% Similarity=0.497 Sum_probs=133.3
Q ss_pred HHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEEEeCCHHHHHHHHH-hCCCccCCeeEEEecc
Q psy14193 52 SSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALE-MNGHVIDEHTIRVDKA 130 (239)
Q Consensus 52 ~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV~f~~~e~a~~Ai~-~~~~~l~g~~i~v~~~ 130 (239)
++|++.|.+||+|.+++ |++|..|++|+|||||.|.+.++|+.||. |||..|++|.|+-.|+
T Consensus 77 e~lr~aF~pFGevS~ak-----------------virD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWA 139 (321)
T KOG0148|consen 77 EKLREAFAPFGEVSDAK-----------------VIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWA 139 (321)
T ss_pred HHHHHHhccccccccce-----------------EeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecccc
Confidence 79999999999999987 68899999999999999999999999999 9999999999999999
Q ss_pred CCCCCC-----------------CCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHH
Q psy14193 131 LTTTKS-----------------NSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEE 193 (239)
Q Consensus 131 ~~~~~~-----------------~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a 193 (239)
..++.. ..++|||+|++..+|+++|++.|++||+|.+||+.++ +||+||.|.+.|.|
T Consensus 140 TRKp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~------qGYaFVrF~tkEaA 213 (321)
T KOG0148|consen 140 TRKPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD------QGYAFVRFETKEAA 213 (321)
T ss_pred ccCccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc------cceEEEEecchhhH
Confidence 877653 2799999999999999999999999999999999988 68999999999999
Q ss_pred HHHHHHhCCcEeeEEEEeeCCC
Q psy14193 194 LRKAFESCGEIDNVRLIRDQHT 215 (239)
Q Consensus 194 ~~a~~~~~g~~~~~r~l~~~~~ 215 (239)
++|+..+||..++|+++++.|.
T Consensus 214 ahAIv~mNntei~G~~VkCsWG 235 (321)
T KOG0148|consen 214 AHAIVQMNNTEIGGQLVRCSWG 235 (321)
T ss_pred HHHHHHhcCceeCceEEEEecc
Confidence 9999999999999999999764
No 4
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.97 E-value=7e-31 Score=224.89 Aligned_cols=163 Identities=19% Similarity=0.337 Sum_probs=144.9
Q ss_pred cceeEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEE
Q psy14193 22 SKLKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYV 101 (239)
Q Consensus 22 ~~~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV 101 (239)
.+.+|||+.+......+ +|+++|++||+|.+|+ +++|..|++++|||||
T Consensus 106 ~~~~LfVgnLp~~~te~--------------~L~~lF~~~G~V~~v~-----------------i~~d~~tg~srGyaFV 154 (346)
T TIGR01659 106 SGTNLIVNYLPQDMTDR--------------ELYALFRTIGPINTCR-----------------IMRDYKTGYSFGYAFV 154 (346)
T ss_pred CCcEEEEeCCCCCCCHH--------------HHHHHHHhcCCEEEEE-----------------EEecCCCCccCcEEEE
Confidence 45678888766655444 9999999999999988 4677888999999999
Q ss_pred EeCCHHHHHHHHH-hCCCccCCeeEEEeccCCCCCC-CCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCC
Q psy14193 102 RFKNLESVEKALE-MNGHVIDEHTIRVDKALTTTKS-NSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIG 179 (239)
Q Consensus 102 ~f~~~e~a~~Ai~-~~~~~l~g~~i~v~~~~~~~~~-~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~ 179 (239)
+|.++++|++|++ +++..+.+++|.|.++.+.... ...+|||+|||.++|+++|+++|++||+|..++++++..++++
T Consensus 155 eF~~~e~A~~Ai~~LnG~~l~gr~i~V~~a~p~~~~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~ 234 (346)
T TIGR01659 155 DFGSEADSQRAIKNLNGITVRNKRLKVSYARPGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTP 234 (346)
T ss_pred EEccHHHHHHHHHHcCCCccCCceeeeecccccccccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCcc
Confidence 9999999999999 9999999999999998765433 3678999999999999999999999999999999999889999
Q ss_pred ceEEEEEecChHHHHHHHHHhCCcEeeE--EEEeeCCC
Q psy14193 180 KGFGYVNFKAEEEELRKAFESCGEIDNV--RLIRDQHT 215 (239)
Q Consensus 180 kg~~fV~F~~~e~a~~a~~~~~g~~~~~--r~l~~~~~ 215 (239)
+|||||+|.+.++|.+|+..+|+..+.+ +.|+|..+
T Consensus 235 kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~a 272 (346)
T TIGR01659 235 RGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRLA 272 (346)
T ss_pred ceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEEC
Confidence 9999999999999999999999998866 67777644
No 5
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.97 E-value=1.2e-30 Score=238.72 Aligned_cols=181 Identities=23% Similarity=0.368 Sum_probs=156.9
Q ss_pred eEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEEEeC
Q psy14193 25 KVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFK 104 (239)
Q Consensus 25 ~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV~f~ 104 (239)
.|||+.+....... +|+++|++||+|.+|+ +++|..|++++|||||+|.
T Consensus 2 sl~VgnLp~~vte~--------------~L~~~F~~~G~v~~v~-----------------v~~d~~t~~s~G~afV~F~ 50 (562)
T TIGR01628 2 SLYVGDLDPDVTEA--------------KLYDLFKPFGPVLSVR-----------------VCRDSVTRRSLGYGYVNFQ 50 (562)
T ss_pred eEEEeCCCCCCCHH--------------HHHHHHHhcCCEEEEE-----------------EEecCCCCCcceEEEEEEC
Confidence 46777765554444 9999999999999998 5778888999999999999
Q ss_pred CHHHHHHHHH-hCCCccCCeeEEEeccCCCCCC---CCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCc
Q psy14193 105 NLESVEKALE-MNGHVIDEHTIRVDKALTTTKS---NSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGK 180 (239)
Q Consensus 105 ~~e~a~~Ai~-~~~~~l~g~~i~v~~~~~~~~~---~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~k 180 (239)
+.++|++|++ +|+..+.|++|+|.|+...... ...+|||+|||.++++++|+++|+.||.|.+|++..+ .+|.++
T Consensus 51 ~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~~~~~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~-~~g~sk 129 (562)
T TIGR01628 51 NPADAERALETMNFKRLGGKPIRIMWSQRDPSLRRSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATD-ENGKSR 129 (562)
T ss_pred CHHHHHHHHHHhCCCEECCeeEEeecccccccccccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeec-CCCCcc
Confidence 9999999999 9999999999999998644322 2568999999999999999999999999999999998 478899
Q ss_pred eEEEEEecChHHHHHHHHHhCCcEeeEEEEeeC-----------------------------------------------
Q psy14193 181 GFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQ----------------------------------------------- 213 (239)
Q Consensus 181 g~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~----------------------------------------------- 213 (239)
|||||+|.+.++|.+|+..+||..+.++.+.+.
T Consensus 130 g~afV~F~~~e~A~~Ai~~lng~~~~~~~i~v~~~~~~~~~~~~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~ 209 (562)
T TIGR01628 130 GYGFVHFEKEESAKAAIQKVNGMLLNDKEVYVGRFIKKHEREAAPLKKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAA 209 (562)
T ss_pred cEEEEEECCHHHHHHHHHHhcccEecCceEEEeccccccccccccccCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEE
Confidence 999999999999999999999988777766541
Q ss_pred ----CCCCCcceEEEEeCChHHHHhhhh
Q psy14193 214 ----HTNIGKGFGYVNFKVSFTTLSSIF 237 (239)
Q Consensus 214 ----~~~~~~G~~fv~f~~~~~a~~a~~ 237 (239)
..++++|||||+|.++++|.+|+.
T Consensus 210 i~~~~~g~~~G~afV~F~~~e~A~~Av~ 237 (562)
T TIGR01628 210 VMKDGSGRSRGFAFVNFEKHEDAAKAVE 237 (562)
T ss_pred EEECCCCCcccEEEEEECCHHHHHHHHH
Confidence 234568999999999999999985
No 6
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.97 E-value=1.5e-29 Score=226.31 Aligned_cols=162 Identities=29% Similarity=0.448 Sum_probs=141.8
Q ss_pred cceeEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEE
Q psy14193 22 SKLKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYV 101 (239)
Q Consensus 22 ~~~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV 101 (239)
..+.|||+++...... ++|+++|++||+|.+|++ +.|..++.++|||||
T Consensus 88 ~~~~l~V~nlp~~~~~--------------~~l~~~F~~~G~v~~v~i-----------------~~d~~~~~skg~afV 136 (457)
T TIGR01622 88 DDRTVFVLQLALKARE--------------RDLYEFFSKVGKVRDVQC-----------------IKDRNSRRSKGVAYV 136 (457)
T ss_pred CCcEEEEeCCCCCCCH--------------HHHHHHHHhcCCeeEEEE-----------------eecCCCCCcceEEEE
Confidence 3567777776555443 499999999999999984 567778899999999
Q ss_pred EeCCHHHHHHHHHhCCCccCCeeEEEeccCCCCC-------------CCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEE
Q psy14193 102 RFKNLESVEKALEMNGHVIDEHTIRVDKALTTTK-------------SNSHSIFIGNIPFEAEEEELRKAFESCGEIDNV 168 (239)
Q Consensus 102 ~f~~~e~a~~Ai~~~~~~l~g~~i~v~~~~~~~~-------------~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v 168 (239)
+|.+.++|.+|+.++|..+.|++|.|.++..... ....+|||+|||..+|+++|+++|++||.|..+
T Consensus 137 eF~~~e~A~~Al~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v 216 (457)
T TIGR01622 137 EFYDVESVIKALALTGQMLLGRPIIVQSSQAEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDV 216 (457)
T ss_pred EECCHHHHHHHHHhCCCEECCeeeEEeecchhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEE
Confidence 9999999999999999999999999987543211 125799999999999999999999999999999
Q ss_pred EEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeCC
Q psy14193 169 RLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQH 214 (239)
Q Consensus 169 ~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~~ 214 (239)
.++.++.+|.++|||||+|.+.++|.+|+..++|..+.++.|+|.+
T Consensus 217 ~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~ 262 (457)
T TIGR01622 217 QLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGY 262 (457)
T ss_pred EEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEE
Confidence 9999988899999999999999999999999999999999888765
No 7
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.97 E-value=1.4e-29 Score=231.84 Aligned_cols=211 Identities=17% Similarity=0.328 Sum_probs=169.8
Q ss_pred hcccccccccccccceeEEeehhhHhhhhhcC-CCc----chhhchhHHHHHHhcccCCceeEEEEeecccccCCCccce
Q psy14193 9 SLTMIPTQNRNLMSKLKVFLNIWKMALKLKMN-PSL----TKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKA 83 (239)
Q Consensus 9 ~~~~~~~~n~~~~~~~~v~v~~~~~~~~~~~~-~~~----~~~k~~r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~ 83 (239)
+..+|..+|+..++|+.|.|.+.......... ... ...+....++|+++|++||.|.+|++ ..+
T Consensus 55 A~~Al~~ln~~~i~gk~i~i~~s~~~~~~~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i---~~~-------- 123 (562)
T TIGR01628 55 AERALETMNFKRLGGKPIRIMWSQRDPSLRRSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKV---ATD-------- 123 (562)
T ss_pred HHHHHHHhCCCEECCeeEEeecccccccccccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEe---eec--------
Confidence 44568889999999999999876543221111 000 11122333999999999999999984 222
Q ss_pred eeecccccCCCCcceEEEEeCCHHHHHHHHH-hCCCccCCeeEEEeccCCCCCC------CCcEEEEcCCCCCCcHHHHH
Q psy14193 84 CIKMNKVHEKRTNMNAYVRFKNLESVEKALE-MNGHVIDEHTIRVDKALTTTKS------NSHSIFIGNIPFEAEEEELR 156 (239)
Q Consensus 84 ~~~~~~~~t~~~~G~afV~f~~~e~a~~Ai~-~~~~~l~g~~i~v~~~~~~~~~------~~~~l~V~nLp~~~t~~~l~ 156 (239)
.+++++|||||+|.+.++|.+|++ +|+..+.++.|.|........+ ..++|||+|||.++|+++|+
T Consensus 124 -------~~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~~~i~v~~~~~~~~~~~~~~~~~~~l~V~nl~~~~tee~L~ 196 (562)
T TIGR01628 124 -------ENGKSRGYGFVHFEKEESAKAAIQKVNGMLLNDKEVYVGRFIKKHEREAAPLKKFTNLYVKNLDPSVNEDKLR 196 (562)
T ss_pred -------CCCCcccEEEEEECCHHHHHHHHHHhcccEecCceEEEeccccccccccccccCCCeEEEeCCCCcCCHHHHH
Confidence 245677999999999999999999 9999999999999876554433 26789999999999999999
Q ss_pred HHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEee----EEEEeeC-------------------
Q psy14193 157 KAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDN----VRLIRDQ------------------- 213 (239)
Q Consensus 157 ~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~----~r~l~~~------------------- 213 (239)
++|+.||.|.++.+..+ .+|.++|||||+|.+.++|.+|+..++|..+. ++.+.+.
T Consensus 197 ~~F~~fG~i~~~~i~~~-~~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~l~v~~a~~k~er~~~~~~~~~~~ 275 (562)
T TIGR01628 197 ELFAKFGEITSAAVMKD-GSGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKLYVGRAQKRAEREAELRRKFEEL 275 (562)
T ss_pred HHHHhcCCEEEEEEEEC-CCCCcccEEEEEECCHHHHHHHHHHhCCcEecccccceeeEeecccChhhhHHHHHhhHHhh
Confidence 99999999999999998 47899999999999999999999999998887 5544331
Q ss_pred ---------------------------------------------CCCCCcceEEEEeCChHHHHhhhhc
Q psy14193 214 ---------------------------------------------HTNIGKGFGYVNFKVSFTTLSSIFS 238 (239)
Q Consensus 214 ---------------------------------------------~~~~~~G~~fv~f~~~~~a~~a~~~ 238 (239)
.++.++|||||+|++.++|.+|+.+
T Consensus 276 ~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d~~g~~~g~gfV~f~~~~~A~~A~~~ 345 (562)
T TIGR01628 276 QQERKMKAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLDEKGVSRGFGFVCFSNPEEANRAVTE 345 (562)
T ss_pred hhhhhcccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEECCCCCcCCeEEEEeCCHHHHHHHHHH
Confidence 3456789999999999999999853
No 8
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.97 E-value=8.6e-30 Score=229.27 Aligned_cols=147 Identities=18% Similarity=0.345 Sum_probs=134.4
Q ss_pred HHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEEEeCCHHHHHHHHH-hCCCccCCeeEEEecc
Q psy14193 52 SSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALE-MNGHVIDEHTIRVDKA 130 (239)
Q Consensus 52 ~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV~f~~~e~a~~Ai~-~~~~~l~g~~i~v~~~ 130 (239)
++|+++|++||+|.+|+ ++.|+.|++++|||||+|.+.++|++|++ +||..+.|+.|.|.+.
T Consensus 122 e~Lr~lF~~fG~I~sV~-----------------I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 122 DTIRRAFDPFGPIKSIN-----------------MSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred HHHHHHHHccCCEEEEE-----------------EeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 59999999999999988 46677889999999999999999999999 9999999999999875
Q ss_pred CCCCC------------CCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHH
Q psy14193 131 LTTTK------------SNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAF 198 (239)
Q Consensus 131 ~~~~~------------~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~ 198 (239)
..... ...++|||+|||+++++++|+++|+.||+|.++++.+++.+|.++|||||+|.+.++|.+|+.
T Consensus 185 ~~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~ 264 (612)
T TIGR01645 185 SNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIA 264 (612)
T ss_pred ccccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHH
Confidence 43221 125799999999999999999999999999999999998899999999999999999999999
Q ss_pred HhCCcEeeEEEEeeCCC
Q psy14193 199 ESCGEIDNVRLIRDQHT 215 (239)
Q Consensus 199 ~~~g~~~~~r~l~~~~~ 215 (239)
.+||..++|+.|+|..+
T Consensus 265 amNg~elgGr~LrV~kA 281 (612)
T TIGR01645 265 SMNLFDLGGQYLRVGKC 281 (612)
T ss_pred HhCCCeeCCeEEEEEec
Confidence 99999999999999754
No 9
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.97 E-value=2.2e-29 Score=218.11 Aligned_cols=189 Identities=21% Similarity=0.312 Sum_probs=152.6
Q ss_pred cccccccccccccceeEEeehhhHhhhhh--cCCC-cchhhchhHHHHHHhcccCCceeEEEEeecccccCCCccceeee
Q psy14193 10 LTMIPTQNRNLMSKLKVFLNIWKMALKLK--MNPS-LTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIK 86 (239)
Q Consensus 10 ~~~~~~~n~~~~~~~~v~v~~~~~~~~~~--~~~~-~~~~k~~r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~ 86 (239)
..+|..+||..+.|+.|.|.+........ .+.. ....+....++|+++|++||+|..+++
T Consensus 59 ~~Ai~~l~g~~l~g~~i~v~~a~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~----------------- 121 (352)
T TIGR01661 59 EKAVNSLNGLRLQNKTIKVSYARPSSDSIKGANLYVSGLPKTMTQHELESIFSPFGQIITSRI----------------- 121 (352)
T ss_pred HHHHhhcccEEECCeeEEEEeecccccccccceEEECCccccCCHHHHHHHHhccCCEEEEEE-----------------
Confidence 44578899999999999997654332110 0000 011122333899999999999999884
Q ss_pred cccccCCCCcceEEEEeCCHHHHHHHHH-hCCCccCC--eeEEEeccCCCCCC---------------------------
Q psy14193 87 MNKVHEKRTNMNAYVRFKNLESVEKALE-MNGHVIDE--HTIRVDKALTTTKS--------------------------- 136 (239)
Q Consensus 87 ~~~~~t~~~~G~afV~f~~~e~a~~Ai~-~~~~~l~g--~~i~v~~~~~~~~~--------------------------- 136 (239)
+.+..++.++|||||+|.+.++|+.|++ +||..+.| .+|.|.++......
T Consensus 122 ~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (352)
T TIGR01661 122 LSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKFANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILT 201 (352)
T ss_pred EecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCCCCcCCchhcCchhhcccCcccCCCCcccccc
Confidence 4455667888999999999999999999 99998876 67888776433200
Q ss_pred ------------------------------------------------------------------CCcEEEEcCCCCCC
Q psy14193 137 ------------------------------------------------------------------NSHSIFIGNIPFEA 150 (239)
Q Consensus 137 ------------------------------------------------------------------~~~~l~V~nLp~~~ 150 (239)
.+.+|||+|||+++
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~ 281 (352)
T TIGR01661 202 AAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAAQRASPPATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDT 281 (352)
T ss_pred ccCCCCccCcccccccCcchhhhhhhhhhhhcccccccccccCCCccccccccccccCCCCCCCCCCCcEEEEeCCCCCC
Confidence 02269999999999
Q ss_pred cHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeCCC
Q psy14193 151 EEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHT 215 (239)
Q Consensus 151 t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~~~ 215 (239)
++++|+++|++||.|.++++++|+.||.++|||||+|.+.++|..|+..|||..++||.|+|.+.
T Consensus 282 ~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~ 346 (352)
T TIGR01661 282 DETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFK 346 (352)
T ss_pred CHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence 99999999999999999999999889999999999999999999999999999999999999765
No 10
>KOG0117|consensus
Probab=99.96 E-value=5e-28 Score=204.24 Aligned_cols=181 Identities=17% Similarity=0.267 Sum_probs=144.1
Q ss_pred cceeEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEE
Q psy14193 22 SKLKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYV 101 (239)
Q Consensus 22 ~~~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV 101 (239)
.|..||||...+..-.. +|..+|++.|+|-+++ +|+|+.+|.++|||||
T Consensus 82 ~G~EVfvGkIPrD~~Ed--------------eLvplfEkiG~I~elR-----------------LMmD~~sG~nRGYAFV 130 (506)
T KOG0117|consen 82 RGCEVFVGKIPRDVFED--------------ELVPLFEKIGKIYELR-----------------LMMDPFSGDNRGYAFV 130 (506)
T ss_pred CCceEEecCCCccccch--------------hhHHHHHhccceeeEE-----------------EeecccCCCCcceEEE
Confidence 46788888766554444 9999999999999998 5889999999999999
Q ss_pred EeCCHHHHHHHHH-hCCCcc-CCeeEEEeccCCCCCCCCcEEEEcCCCCCCcHHHHHHHhhcCCC-eeEEEEeecC-CCC
Q psy14193 102 RFKNLESVEKALE-MNGHVI-DEHTIRVDKALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGE-IDNVRLIRDQ-HTN 177 (239)
Q Consensus 102 ~f~~~e~a~~Ai~-~~~~~l-~g~~i~v~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~-i~~v~i~~~~-~tg 177 (239)
.|.+.+.|+.|++ +|+.+| .|+.|.|+.+..+ +.|||+|+|+++++++|.+.+++.++ |++|.+...+ ...
T Consensus 131 tf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~Svan-----~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~ 205 (506)
T KOG0117|consen 131 TFCTKEEAQEAIKELNNYEIRPGKLLGVCVSVAN-----CRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKT 205 (506)
T ss_pred EeecHHHHHHHHHHhhCccccCCCEeEEEEeeec-----ceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccc
Confidence 9999999999999 999999 7999999988766 79999999999999999999999884 7777776654 346
Q ss_pred CCceEEEEEecChHHHHHHHHHh-CCc-EeeEEEEeeCCC----------------------------------------
Q psy14193 178 IGKGFGYVNFKAEEEELRKAFES-CGE-IDNVRLIRDQHT---------------------------------------- 215 (239)
Q Consensus 178 ~~kg~~fV~F~~~e~a~~a~~~~-~g~-~~~~r~l~~~~~---------------------------------------- 215 (239)
+++|||||+|.++..|..|-.+| +|. .+.++.+.|.|+
T Consensus 206 KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~tVdWAep~~e~ded~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~ 285 (506)
T KOG0117|consen 206 KNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAITVDWAEPEEEPDEDTMSKVKVLYVRNLMESTTEETLKKLFNEFGK 285 (506)
T ss_pred cccceEEEEeecchhHHHHHhhccCCceeecCCcceeeccCcccCCChhhhhheeeeeeeccchhhhHHHHHHHHHhccc
Confidence 78999999999987665554321 111 122222222211
Q ss_pred ----CCCcceEEEEeCChHHHHhhhhc
Q psy14193 216 ----NIGKGFGYVNFKVSFTTLSSIFS 238 (239)
Q Consensus 216 ----~~~~G~~fv~f~~~~~a~~a~~~ 238 (239)
-+.+.||||+|.++++|++||.+
T Consensus 286 veRVkk~rDYaFVHf~eR~davkAm~~ 312 (506)
T KOG0117|consen 286 VERVKKPRDYAFVHFAEREDAVKAMKE 312 (506)
T ss_pred eEEeecccceeEEeecchHHHHHHHHH
Confidence 13477999999999999999964
No 11
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.95 E-value=2.8e-27 Score=214.28 Aligned_cols=167 Identities=14% Similarity=0.262 Sum_probs=130.1
Q ss_pred ccceeEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEE
Q psy14193 21 MSKLKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAY 100 (239)
Q Consensus 21 ~~~~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~af 100 (239)
-..+.|||+++......+ +|+++|++++...... ... .+ ..+.+...+.++||||
T Consensus 173 ~~~r~lyVgnLp~~~t~~--------------~l~~~F~~~~~~~~~~---~~~--~~------~~v~~~~~~~~kg~af 227 (509)
T TIGR01642 173 RQARRLYVGGIPPEFVEE--------------AVVDFFNDLMIATGYH---KAE--DG------KHVSSVNINKEKNFAF 227 (509)
T ss_pred ccccEEEEeCCCCCCCHH--------------HHHHHHHHHHHhcCCC---CCC--CC------CceEEEEECCCCCEEE
Confidence 345788888876665444 9999999763221100 000 00 0111222345679999
Q ss_pred EEeCCHHHHHHHHHhCCCccCCeeEEEeccCCCC------------------------------CCCCcEEEEcCCCCCC
Q psy14193 101 VRFKNLESVEKALEMNGHVIDEHTIRVDKALTTT------------------------------KSNSHSIFIGNIPFEA 150 (239)
Q Consensus 101 V~f~~~e~a~~Ai~~~~~~l~g~~i~v~~~~~~~------------------------------~~~~~~l~V~nLp~~~ 150 (239)
|+|.+.++|..|++++|..+.|++|.|.+..... .....+|||+|||..+
T Consensus 228 VeF~~~e~A~~Al~l~g~~~~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~ 307 (509)
T TIGR01642 228 LEFRTVEEATFAMALDSIIYSNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYL 307 (509)
T ss_pred EEeCCHHHHhhhhcCCCeEeeCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCC
Confidence 9999999999999999999999999997543211 0124789999999999
Q ss_pred cHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEee
Q psy14193 151 EEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRD 212 (239)
Q Consensus 151 t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~ 212 (239)
++++|+++|+.||.|..+.++.+..+|.++|||||+|.+.++|..|+..++|..+.++.|.+
T Consensus 308 ~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v 369 (509)
T TIGR01642 308 GEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHV 369 (509)
T ss_pred CHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 99999999999999999999999889999999999999999999999999999999887765
No 12
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.95 E-value=1e-26 Score=209.09 Aligned_cols=163 Identities=17% Similarity=0.270 Sum_probs=131.6
Q ss_pred HHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEEEeCCHHHHHHHHH-hCCCccC-CeeEEEec
Q psy14193 52 SSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALE-MNGHVID-EHTIRVDK 129 (239)
Q Consensus 52 ~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV~f~~~e~a~~Ai~-~~~~~l~-g~~i~v~~ 129 (239)
++|+++|++||+|.+|+ +++| .+++++|||||+|.+.++|++|++ +|+..+. ++.|.|..
T Consensus 73 d~L~~~F~~~G~I~~vr-----------------l~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~ 134 (578)
T TIGR01648 73 DELVPLFEKAGPIYELR-----------------LMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCI 134 (578)
T ss_pred HHHHHHHHhhCCEEEEE-----------------EEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccccccc
Confidence 59999999999999988 3556 678889999999999999999999 9999885 78888877
Q ss_pred cCCCCCCCCcEEEEcCCCCCCcHHHHHHHhhcCCC-eeEEEE-eecCCCCCCceEEEEEecChHHHHHHHHHhCC--cEe
Q psy14193 130 ALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGE-IDNVRL-IRDQHTNIGKGFGYVNFKAEEEELRKAFESCG--EID 205 (239)
Q Consensus 130 ~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~-i~~v~i-~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g--~~~ 205 (239)
+.. .++|||+|||.++++++|.+.|+++++ +..+.+ ......++++|||||+|.++++|..|+..++. ..+
T Consensus 135 S~~-----~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l 209 (578)
T TIGR01648 135 SVD-----NCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQL 209 (578)
T ss_pred ccc-----CceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEe
Confidence 654 469999999999999999999999864 444433 23334567899999999999999999887653 234
Q ss_pred eEEEEeeCCCC----------------------------------------------CCcceEEEEeCChHHHHhhhh
Q psy14193 206 NVRLIRDQHTN----------------------------------------------IGKGFGYVNFKVSFTTLSSIF 237 (239)
Q Consensus 206 ~~r~l~~~~~~----------------------------------------------~~~G~~fv~f~~~~~a~~a~~ 237 (239)
.++.|.|.++. ..+|||||+|.++++|.+||.
T Consensus 210 ~Gr~I~VdwA~p~~~~d~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~rgfAFVeF~s~e~A~kAi~ 287 (578)
T TIGR01648 210 WGHVIAVDWAEPEEEVDEDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIRDYAFVHFEDREDAVKAMD 287 (578)
T ss_pred cCceEEEEeecccccccccccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeecCeEEEEeCCHHHHHHHHH
Confidence 45555443211 228999999999999999985
No 13
>KOG0123|consensus
Probab=99.95 E-value=1.8e-26 Score=198.74 Aligned_cols=159 Identities=26% Similarity=0.400 Sum_probs=145.2
Q ss_pred HHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEEEeCCHHHHHHHHH-hCCCccCCeeEEEecc
Q psy14193 52 SSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALE-MNGHVIDEHTIRVDKA 130 (239)
Q Consensus 52 ~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV~f~~~e~a~~Ai~-~~~~~l~g~~i~v~~~ 130 (239)
.+|.++|+++|+|.+++ +++|. | |.|||||.|.++++|++||+ +|...+.|++|++.|+
T Consensus 13 ~~l~~~f~~~~~v~s~r-----------------vc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s 72 (369)
T KOG0123|consen 13 AMLFDKFSPAGPVLSIR-----------------VCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWS 72 (369)
T ss_pred HHHHHHhcccCCceeEE-----------------EeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehh
Confidence 59999999999999998 57777 6 89999999999999999999 9999999999999999
Q ss_pred CCCCCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEE
Q psy14193 131 LTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLI 210 (239)
Q Consensus 131 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l 210 (239)
...+. .+||.||+++++...|.++|+.||+|++|++..+. .| ++|| ||+|+++++|.+|+..+||..+.++.+
T Consensus 73 ~rd~~----~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~-~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki 145 (369)
T KOG0123|consen 73 QRDPS----LVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDE-NG-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKI 145 (369)
T ss_pred ccCCc----eeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcC-CC-ceee-EEEeCCHHHHHHHHHHhcCcccCCCee
Confidence 87754 39999999999999999999999999999999995 55 9999 999999999999999999999988888
Q ss_pred ee------------------------------------------------------CCCCCCcceEEEEeCChHHHHhhh
Q psy14193 211 RD------------------------------------------------------QHTNIGKGFGYVNFKVSFTTLSSI 236 (239)
Q Consensus 211 ~~------------------------------------------------------~~~~~~~G~~fv~f~~~~~a~~a~ 236 (239)
.+ +..++++|||||.|.++++|..|+
T Consensus 146 ~vg~~~~~~er~~~~~~~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~~g~~~~~gfv~f~~~e~a~~av 225 (369)
T KOG0123|consen 146 YVGLFERKEEREAPLGEYKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDSIGKSKGFGFVNFENPEDAKKAV 225 (369)
T ss_pred EEeeccchhhhcccccchhhhhhhhheeccccccchHHHHHhhcccCcceEEEEeecCCCCCCCccceeecChhHHHHHH
Confidence 76 123568999999999999999887
Q ss_pred h
Q psy14193 237 F 237 (239)
Q Consensus 237 ~ 237 (239)
-
T Consensus 226 ~ 226 (369)
T KOG0123|consen 226 E 226 (369)
T ss_pred H
Confidence 4
No 14
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.94 E-value=4.5e-25 Score=198.19 Aligned_cols=177 Identities=16% Similarity=0.197 Sum_probs=134.6
Q ss_pred ccccc--cccccccceeEEeehhhHhh-hhhcCCC---cc-------h----hhchhHHHHHHhcccCCceeEEEEeecc
Q psy14193 11 TMIPT--QNRNLMSKLKVFLNIWKMAL-KLKMNPS---LT-------K----SKNHALSSVTSMFKPYGEVETVRFRSVP 73 (239)
Q Consensus 11 ~~~~~--~n~~~~~~~~v~v~~~~~~~-~~~~~~~---~~-------~----~k~~r~~~l~~~F~~~G~I~~v~l~~~~ 73 (239)
.+|.. +|+..+.|+.|+|.+...+. .+..+.. .. . ......++|+++|++||+|.+|.+
T Consensus 53 ~Ai~~~~~~~~~l~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i---- 128 (481)
T TIGR01649 53 ACVNFATSVPIYIRGQPAFFNYSTSQEIKRDGNSDFDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVT---- 128 (481)
T ss_pred HHHHHhhcCCceEcCeEEEEEecCCcccccCCCCcccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEE----
Confidence 34553 48889999999999876542 1111100 00 0 012223999999999999999884
Q ss_pred cccCCCccceeeecccccCCCCcceEEEEeCCHHHHHHHHH-hCCCccCC--eeEEEeccCCCC----------------
Q psy14193 74 VADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALE-MNGHVIDE--HTIRVDKALTTT---------------- 134 (239)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~t~~~~G~afV~f~~~e~a~~Ai~-~~~~~l~g--~~i~v~~~~~~~---------------- 134 (239)
+++. ..|+|||+|.+.++|.+|++ |||..|.+ ..|+|.++.+..
T Consensus 129 -------------~~~~----~~~~afVef~~~~~A~~A~~~Lng~~i~~~~~~l~v~~sk~~~l~v~~~~~~s~dyt~~ 191 (481)
T TIGR01649 129 -------------FTKN----NVFQALVEFESVNSAQHAKAALNGADIYNGCCTLKIEYAKPTRLNVKYNDDDSRDYTNP 191 (481)
T ss_pred -------------EecC----CceEEEEEECCHHHHHHHHHHhcCCcccCCceEEEEEEecCCCceeEecccCCCCCcCC
Confidence 1221 23799999999999999999 99999965 356665543200
Q ss_pred --------------------------------------------------------------------------------
Q psy14193 135 -------------------------------------------------------------------------------- 134 (239)
Q Consensus 135 -------------------------------------------------------------------------------- 134 (239)
T Consensus 192 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (481)
T TIGR01649 192 DLPGRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSSHGGPLAPLAGGDRMGPPHGPPSRYRPAYEAAPLAPAISSYGPAG 271 (481)
T ss_pred CCCCCCCCCcCccccccccccccCCCccCCCcccccCCCCCCcccccccCCCcccCCCCCcccccccccCccccccCCCC
Confidence
Q ss_pred CCCCcEEEEcCCCC-CCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeC
Q psy14193 135 KSNSHSIFIGNIPF-EAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQ 213 (239)
Q Consensus 135 ~~~~~~l~V~nLp~-~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~ 213 (239)
..+.++|||+|||+ .+|+++|+++|+.||.|.+++++.+ .+|+|||+|.+.++|..|+..|||..+.|+.|++.
T Consensus 272 ~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~ 346 (481)
T TIGR01649 272 GGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKN-----KKETALIEMADPYQAQLALTHLNGVKLFGKPLRVC 346 (481)
T ss_pred CCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEE
Confidence 01246899999998 6999999999999999999999886 36899999999999999999999999999888774
No 15
>KOG0123|consensus
Probab=99.93 E-value=3.1e-25 Score=191.14 Aligned_cols=205 Identities=21% Similarity=0.348 Sum_probs=168.1
Q ss_pred ccccccccccccceeEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccCCceeEEEEeecccccCCCccceeeecccc
Q psy14193 11 TMIPTQNRNLMSKLKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKV 90 (239)
Q Consensus 11 ~~~~~~n~~~~~~~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~ 90 (239)
.+|+++|...++|+++.+.|....... -......+....++|.+.|+.||+|++|+ +.++.+|
T Consensus 52 ~A~~~~n~~~~~~~~~rim~s~rd~~~--~~i~nl~~~~~~~~~~d~f~~~g~ilS~k---v~~~~~g------------ 114 (369)
T KOG0123|consen 52 RALDTMNFDVLKGKPIRIMWSQRDPSL--VFIKNLDESIDNKSLYDTFSEFGNILSCK---VATDENG------------ 114 (369)
T ss_pred HHHHHcCCcccCCcEEEeehhccCCce--eeecCCCcccCcHHHHHHHHhhcCeeEEE---EEEcCCC------------
Confidence 468999999999999999988777444 11111222333489999999999999999 4444443
Q ss_pred cCCCCcceEEEEeCCHHHHHHHHH-hCCCccCCeeEEEeccCCCCCCC---------CcEEEEcCCCCCCcHHHHHHHhh
Q psy14193 91 HEKRTNMNAYVRFKNLESVEKALE-MNGHVIDEHTIRVDKALTTTKSN---------SHSIFIGNIPFEAEEEELRKAFE 160 (239)
Q Consensus 91 ~t~~~~G~afV~f~~~e~a~~Ai~-~~~~~l~g~~i~v~~~~~~~~~~---------~~~l~V~nLp~~~t~~~l~~~F~ 160 (239)
++|| ||+|+++++|.+|++ +||..+.+++|.|....++.++. ...+++.|++.+.+++.|..+|.
T Consensus 115 ----~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~er~~~~~~~~~~~t~v~vk~~~~~~~~~~l~~~f~ 189 (369)
T KOG0123|consen 115 ----SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEEREAPLGEYKKRFTNVYVKNLEEDSTDEELKDLFS 189 (369)
T ss_pred ----ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhhhcccccchhhhhhhhheeccccccchHHHHHhhc
Confidence 6799 999999999999999 99999999999998877665543 57799999999999999999999
Q ss_pred cCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEE-------------------------------
Q psy14193 161 SCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRL------------------------------- 209 (239)
Q Consensus 161 ~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~------------------------------- 209 (239)
.+|.|.++.++.+. .|.++||+||.|.++++|..|+..++|....+..
T Consensus 190 ~~g~i~s~~v~~~~-~g~~~~~gfv~f~~~e~a~~av~~l~~~~~~~~~~~V~~aqkk~e~~~~l~~~~~~~~~~~~~~~ 268 (369)
T KOG0123|consen 190 AYGSITSVAVMRDS-IGKSKGFGFVNFENPEDAKKAVETLNGKIFGDKELYVGRAQKKSEREAELKRKFEQEFAKRSVSL 268 (369)
T ss_pred ccCcceEEEEeecC-CCCCCCccceeecChhHHHHHHHhccCCcCCccceeecccccchhhHHHHhhhhHhhhhhccccc
Confidence 99999999999994 6779999999999999999999777776543211
Q ss_pred ---------------------------------EeeCCCCCCcceEEEEeCChHHHHhhhhc
Q psy14193 210 ---------------------------------IRDQHTNIGKGFGYVNFKVSFTTLSSIFS 238 (239)
Q Consensus 210 ---------------------------------l~~~~~~~~~G~~fv~f~~~~~a~~a~~~ 238 (239)
+.+...++++|||||+|++.++|..|+.+
T Consensus 269 ~~~nl~vknld~~~~~e~L~~~f~~~GeI~s~kv~~~~~g~skG~gfV~fs~~eeA~~A~~~ 330 (369)
T KOG0123|consen 269 QGANLYVKNLDETLSDEKLRKIFSSFGEITSAKVMVDENGKSKGFGFVEFSSPEEAKKAMTE 330 (369)
T ss_pred cccccccccCccccchhHHHHHHhcccceeeEEEEeccCCCccceEEEEcCCHHHHHHHHHh
Confidence 12234578899999999999999999864
No 16
>KOG0145|consensus
Probab=99.93 E-value=2.1e-25 Score=177.00 Aligned_cols=189 Identities=22% Similarity=0.295 Sum_probs=157.0
Q ss_pred hcccccccccccccceeEEeehhhHhhhh--hcCCCcchh-hchhHHHHHHhcccCCceeEEEEeecccccCCCccceee
Q psy14193 9 SLTMIPTQNRNLMSKLKVFLNIWKMALKL--KMNPSLTKS-KNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACI 85 (239)
Q Consensus 9 ~~~~~~~~n~~~~~~~~v~v~~~~~~~~~--~~~~~~~~~-k~~r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~ 85 (239)
+.++|..+||..+..|.|.|++....... ..+...... |.-..++|+++|++||.|..-+
T Consensus 96 Ae~AintlNGLrLQ~KTIKVSyARPSs~~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSR----------------- 158 (360)
T KOG0145|consen 96 AEKAINTLNGLRLQNKTIKVSYARPSSDSIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSR----------------- 158 (360)
T ss_pred HHHHHhhhcceeeccceEEEEeccCChhhhcccceEEecCCccchHHHHHHHHHHhhhhhhhh-----------------
Confidence 45678999999999999999876444221 111111111 2222399999999999997655
Q ss_pred ecccccCCCCcceEEEEeCCHHHHHHHHH-hCCCccC--CeeEEEeccCCCCCC--------------------------
Q psy14193 86 KMNKVHEKRTNMNAYVRFKNLESVEKALE-MNGHVID--EHTIRVDKALTTTKS-------------------------- 136 (239)
Q Consensus 86 ~~~~~~t~~~~G~afV~f~~~e~a~~Ai~-~~~~~l~--g~~i~v~~~~~~~~~-------------------------- 136 (239)
+..|.-|+.++|.|||.|+..++|+.||+ +||..-. ..+|.|+++..+...
T Consensus 159 iL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVKFannPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~ 238 (360)
T KOG0145|consen 159 ILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVKFANNPSQKTNQALLSQLYQSPARRYGGPMHHQAQ 238 (360)
T ss_pred hhhhcccceecceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEEecCCcccccchhhhHHhhcCccccCCCcccchhh
Confidence 56677788999999999999999999999 9998764 478999887654432
Q ss_pred --------------------------------------CCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCC
Q psy14193 137 --------------------------------------NSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNI 178 (239)
Q Consensus 137 --------------------------------------~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~ 178 (239)
...+|||-||.++++|.-|+++|++||.|+.+++++|..|.+
T Consensus 239 r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~~~~~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnk 318 (360)
T KOG0145|consen 239 RFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLPGGPGGGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNK 318 (360)
T ss_pred hhccccccchhhhhccCCCccccccceeeeeccCCCCCCeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCccc
Confidence 168999999999999999999999999999999999999999
Q ss_pred CceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeCC
Q psy14193 179 GKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQH 214 (239)
Q Consensus 179 ~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~~ 214 (239)
.||||||...+.++|..|+..+||..+++|.|.|..
T Consensus 319 CKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsF 354 (360)
T KOG0145|consen 319 CKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSF 354 (360)
T ss_pred ccceeEEEecchHHHHHHHHHhcCccccceEEEEEE
Confidence 999999999999999999999999999999999853
No 17
>KOG0131|consensus
Probab=99.93 E-value=1.3e-25 Score=169.47 Aligned_cols=163 Identities=20% Similarity=0.299 Sum_probs=144.7
Q ss_pred cceeEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEE
Q psy14193 22 SKLKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYV 101 (239)
Q Consensus 22 ~~~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV 101 (239)
.+..|||+..-.+..++ .|.++|-+.|+|.++.+ -+|.-+....||||+
T Consensus 8 qd~tiyvgnld~kvs~~--------------~l~EL~iqagpVv~i~i-----------------PkDrv~~~~qGygF~ 56 (203)
T KOG0131|consen 8 QDATLYVGNLDEKVSEE--------------LLYELFIQAGPVVNLHI-----------------PKDRVTQKHQGYGFA 56 (203)
T ss_pred CCceEEEecCCHHHHHH--------------HHHHHHHhcCceeeeec-----------------chhhhcccccceeEE
Confidence 46789999988887666 99999999999999983 345667788899999
Q ss_pred EeCCHHHHHHHHH-hCCCccCCeeEEEeccCCCCCC--CCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEE-EEeecCCCC
Q psy14193 102 RFKNLESVEKALE-MNGHVIDEHTIRVDKALTTTKS--NSHSIFIGNIPFEAEEEELRKAFESCGEIDNV-RLIRDQHTN 177 (239)
Q Consensus 102 ~f~~~e~a~~Ai~-~~~~~l~g~~i~v~~~~~~~~~--~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v-~i~~~~~tg 177 (239)
+|.++|+|+-|++ +|...+.|++|+|..+...... .+.++||+||.+++++..|.+.|+.||.+... .+++++.||
T Consensus 57 Ef~~eedadYAikiln~VkLYgrpIrv~kas~~~~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg 136 (203)
T KOG0131|consen 57 EFRTEEDADYAIKILNMVKLYGRPIRVNKASAHQKNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTG 136 (203)
T ss_pred EEechhhhHHHHHHHHHHHhcCceeEEEecccccccccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCC
Confidence 9999999999999 9999999999999998833332 27899999999999999999999999987763 789999999
Q ss_pred CCceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeCCC
Q psy14193 178 IGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHT 215 (239)
Q Consensus 178 ~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~~~ 215 (239)
.++||||+.|.+.|.+..|+..+||+.+..+.++|..+
T Consensus 137 ~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ya 174 (203)
T KOG0131|consen 137 NPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVSYA 174 (203)
T ss_pred CCCCCeEEechhHHHHHHHHHHhccchhcCCceEEEEE
Confidence 99999999999999999999999999999999999644
No 18
>KOG0144|consensus
Probab=99.92 E-value=1.6e-25 Score=188.44 Aligned_cols=136 Identities=18% Similarity=0.408 Sum_probs=124.1
Q ss_pred HHHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEEEeCCHHHHHHHHH-hCCC-ccC--CeeEE
Q psy14193 51 LSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALE-MNGH-VID--EHTIR 126 (239)
Q Consensus 51 ~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV~f~~~e~a~~Ai~-~~~~-~l~--g~~i~ 126 (239)
++||+++|++||.|.+|. +++|+.|+.++|+|||.|.+.++|.+|+. +++. .+. ..+|.
T Consensus 48 E~dlr~lFe~yg~V~ein-----------------l~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvq 110 (510)
T KOG0144|consen 48 EKDLRELFEKYGNVYEIN-----------------LIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQ 110 (510)
T ss_pred HHHHHHHHHHhCceeEEE-----------------eecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCccee
Confidence 369999999999999987 67899999999999999999999999999 6654 453 48899
Q ss_pred EeccCCCCCCC--CcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcE
Q psy14193 127 VDKALTTTKSN--SHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEI 204 (239)
Q Consensus 127 v~~~~~~~~~~--~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~ 204 (239)
|+++....++. .++|||+-|++.+||.+++++|++||.|++|+|++| ..+.+||||||.|.+.|-|..|+..|||..
T Consensus 111 vk~Ad~E~er~~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd-~~~~sRGcaFV~fstke~A~~Aika~ng~~ 189 (510)
T KOG0144|consen 111 VKYADGERERIVEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRD-PDGLSRGCAFVKFSTKEMAVAAIKALNGTQ 189 (510)
T ss_pred ecccchhhhccccchhhhhhhccccccHHHHHHHHHhhCccchhhheec-ccccccceeEEEEehHHHHHHHHHhhccce
Confidence 99998887764 889999999999999999999999999999999999 479999999999999999999999999974
No 19
>KOG0127|consensus
Probab=99.91 E-value=1e-23 Score=182.09 Aligned_cols=186 Identities=24% Similarity=0.391 Sum_probs=149.8
Q ss_pred ccccccccccccceeEEeehhhHhhhhhc-CCC----cchh-------------hchhH-----------HHHHHhcccC
Q psy14193 11 TMIPTQNRNLMSKLKVFLNIWKMALKLKM-NPS----LTKS-------------KNHAL-----------SSVTSMFKPY 61 (239)
Q Consensus 11 ~~~~~~n~~~~~~~~v~v~~~~~~~~~~~-~~~----~~~~-------------k~~r~-----------~~l~~~F~~~ 61 (239)
.++...+++-+.|+.+.|..+..+...+. ... .+.. +..|. .+|+.+|++|
T Consensus 62 rA~~e~~~~kf~Gr~l~v~~A~~R~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~ 141 (678)
T KOG0127|consen 62 RALAETEQSKFEGRILNVDPAKKRARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNF 141 (678)
T ss_pred HHHHHhhcCcccceecccccccccccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhc
Confidence 45778899999999999988777633321 000 0000 01111 8999999999
Q ss_pred CceeEEEEeecccccCCCccceeeecccccCCCCcceEEEEeCCHHHHHHHHH-hCCCccCCeeEEEeccCCCCCC----
Q psy14193 62 GEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALE-MNGHVIDEHTIRVDKALTTTKS---- 136 (239)
Q Consensus 62 G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV~f~~~e~a~~Ai~-~~~~~l~g~~i~v~~~~~~~~~---- 136 (239)
|.|.+|. ||...+ ++-+|||||+|....+|++|++ +|+..|+|++|.|.|+.++...
T Consensus 142 G~V~Ei~---IP~k~d---------------gklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~ye~ta 203 (678)
T KOG0127|consen 142 GKVVEIV---IPRKKD---------------GKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDTYEDTA 203 (678)
T ss_pred ceEEEEE---cccCCC---------------CCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecccccccccc
Confidence 9999998 444333 3345999999999999999999 9999999999999998654321
Q ss_pred --------------------------------------------------------------------------------
Q psy14193 137 -------------------------------------------------------------------------------- 136 (239)
Q Consensus 137 -------------------------------------------------------------------------------- 136 (239)
T Consensus 204 ~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~~~k~~q~k 283 (678)
T KOG0127|consen 204 HEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKKESDKKAQNK 283 (678)
T ss_pred hhhhhhhhhccchhhhcccccccccccchhcccccccccccccccchhhhccccccccccccccccccccCcccchhccc
Confidence
Q ss_pred -------CCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHh-----CC-c
Q psy14193 137 -------NSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFES-----CG-E 203 (239)
Q Consensus 137 -------~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~-----~g-~ 203 (239)
...+|||.|||+++|+++|.++|++||+|.++.++.++.|+.++|.|||.|.+..++..++... .| .
T Consensus 284 ~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ 363 (678)
T KOG0127|consen 284 TTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSV 363 (678)
T ss_pred cccccccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceE
Confidence 0489999999999999999999999999999999999999999999999999999888887754 44 7
Q ss_pred EeeEEEEeeCC
Q psy14193 204 IDNVRLIRDQH 214 (239)
Q Consensus 204 ~~~~r~l~~~~ 214 (239)
++.||.|.+..
T Consensus 364 ll~GR~Lkv~~ 374 (678)
T KOG0127|consen 364 LLDGRLLKVTL 374 (678)
T ss_pred EEeccEEeeee
Confidence 89999998854
No 20
>KOG0124|consensus
Probab=99.91 E-value=6.9e-24 Score=175.44 Aligned_cols=145 Identities=19% Similarity=0.352 Sum_probs=133.9
Q ss_pred HHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEEEeCCHHHHHHHHH-hCCCccCCeeEEEecc
Q psy14193 52 SSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALE-MNGHVIDEHTIRVDKA 130 (239)
Q Consensus 52 ~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV~f~~~e~a~~Ai~-~~~~~l~g~~i~v~~~ 130 (239)
+.|+..|.+||+|.+|. +..|+.|++++|||||+|+-+|.|..|++ |||..++|+.|+|.+.
T Consensus 128 DtiR~AF~PFGPIKSIn-----------------MSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrP 190 (544)
T KOG0124|consen 128 DTIRRAFDPFGPIKSIN-----------------MSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 190 (544)
T ss_pred HHHHhhccCCCCcceee-----------------cccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCC
Confidence 58999999999999988 46788999999999999999999999999 9999999999999876
Q ss_pred CCCCCC------------CCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHH
Q psy14193 131 LTTTKS------------NSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAF 198 (239)
Q Consensus 131 ~~~~~~------------~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~ 198 (239)
..-+.. ....|||..+.++++++||+..|+.||+|.+|.+-+++.++..+||||++|.+......|+.
T Consensus 191 sNmpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAia 270 (544)
T KOG0124|consen 191 SNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIA 270 (544)
T ss_pred CCCcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhh
Confidence 544432 27899999999999999999999999999999999999888999999999999998889999
Q ss_pred HhCCcEeeEEEEeeC
Q psy14193 199 ESCGEIDNVRLIRDQ 213 (239)
Q Consensus 199 ~~~g~~~~~r~l~~~ 213 (239)
.||-..++|..|+|-
T Consensus 271 sMNlFDLGGQyLRVG 285 (544)
T KOG0124|consen 271 SMNLFDLGGQYLRVG 285 (544)
T ss_pred hcchhhcccceEecc
Confidence 999999999999984
No 21
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.89 E-value=1.8e-22 Score=181.81 Aligned_cols=181 Identities=18% Similarity=0.184 Sum_probs=134.7
Q ss_pred hccccccccccccc-ceeEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccCCc-eeEEEEeecccccCCCccceeee
Q psy14193 9 SLTMIPTQNRNLMS-KLKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGE-VETVRFRSVPVADITLPRKACIK 86 (239)
Q Consensus 9 ~~~~~~~~n~~~~~-~~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~-I~~v~l~~~~~~~~~~~~~~~~~ 86 (239)
+..+|..||+..+. |+.+.|.........- .....+....++|.+.|+++++ +.++.+ .
T Consensus 112 A~~Ai~~lng~~i~~Gr~l~V~~S~~~~rLF---VgNLP~~~TeeeL~eeFskv~egvv~vIv--~-------------- 172 (578)
T TIGR01648 112 AKEAVKLLNNYEIRPGRLLGVCISVDNCRLF---VGGIPKNKKREEILEEFSKVTEGVVDVIV--Y-------------- 172 (578)
T ss_pred HHHHHHHcCCCeecCCccccccccccCceeE---eecCCcchhhHHHHHHhhcccCCceEEEE--e--------------
Confidence 34557788887764 5655543322110000 0011123333799999999975 444432 1
Q ss_pred cccccCCCCcceEEEEeCCHHHHHHHHH-hCC--CccCCeeEEEeccCCCCCC------CCcEEEEcCCCCCCcHHHHHH
Q psy14193 87 MNKVHEKRTNMNAYVRFKNLESVEKALE-MNG--HVIDEHTIRVDKALTTTKS------NSHSIFIGNIPFEAEEEELRK 157 (239)
Q Consensus 87 ~~~~~t~~~~G~afV~f~~~e~a~~Ai~-~~~--~~l~g~~i~v~~~~~~~~~------~~~~l~V~nLp~~~t~~~l~~ 157 (239)
..+.++++++|||||+|.++++|+.|+. ++. ..+.|+.|.|.|+.+.... ..++|||+|||.++++++|++
T Consensus 173 ~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~VdwA~p~~~~d~~~~~~~k~LfVgNL~~~~tee~L~~ 252 (578)
T TIGR01648 173 HSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIAVDWAEPEEEVDEDVMAKVKILYVRNLMTTTTEEIIEK 252 (578)
T ss_pred ccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEEEEeecccccccccccccccEEEEeCCCCCCCHHHHHH
Confidence 1122345678999999999999999998 653 3578999999999876543 257899999999999999999
Q ss_pred HhhcC--CCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeCCCC
Q psy14193 158 AFESC--GEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTN 216 (239)
Q Consensus 158 ~F~~~--G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~~~~ 216 (239)
+|++| |+|.+|.++ ++||||+|.+.++|.+|+..+||..++++.|+|.++.
T Consensus 253 ~F~~f~~G~I~rV~~~--------rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Ak 305 (578)
T TIGR01648 253 SFSEFKPGKVERVKKI--------RDYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLAK 305 (578)
T ss_pred HHHhcCCCceEEEEee--------cCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcc
Confidence 99999 999999765 4599999999999999999999999999999998663
No 22
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.89 E-value=2.3e-22 Score=180.66 Aligned_cols=151 Identities=12% Similarity=0.098 Sum_probs=124.7
Q ss_pred eeEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEEEe
Q psy14193 24 LKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRF 103 (239)
Q Consensus 24 ~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV~f 103 (239)
+-|+|+.+......+ +|+++|++||+|.+|.+ + +++|||||+|
T Consensus 3 ~vv~V~nLp~~~te~--------------~L~~~f~~fG~V~~v~i---~--------------------~~k~~afVef 45 (481)
T TIGR01649 3 PVVHVRNLPQDVVEA--------------DLVEALIPFGPVSYVMM---L--------------------PGKRQALVEF 45 (481)
T ss_pred cEEEEcCCCCCCCHH--------------HHHHHHHhcCCeeEEEE---E--------------------CCCCEEEEEe
Confidence 457777666554444 99999999999999984 1 1358999999
Q ss_pred CCHHHHHHHHH-h--CCCccCCeeEEEeccCCCCCC-------------CCcEEEEcCCCCCCcHHHHHHHhhcCCCeeE
Q psy14193 104 KNLESVEKALE-M--NGHVIDEHTIRVDKALTTTKS-------------NSHSIFIGNIPFEAEEEELRKAFESCGEIDN 167 (239)
Q Consensus 104 ~~~e~a~~Ai~-~--~~~~l~g~~i~v~~~~~~~~~-------------~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~ 167 (239)
.+.++|++|++ + ++..+.|++|.|.++..+... ...+|||+||++.+|+++|+++|++||.|.+
T Consensus 46 ~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~ 125 (481)
T TIGR01649 46 EDEESAKACVNFATSVPIYIRGQPAFFNYSTSQEIKRDGNSDFDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLR 125 (481)
T ss_pred CchHHHHHHHHHhhcCCceEcCeEEEEEecCCcccccCCCCcccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEE
Confidence 99999999998 4 678999999999988543210 1237999999999999999999999999999
Q ss_pred EEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeE--EEEeeCCC
Q psy14193 168 VRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNV--RLIRDQHT 215 (239)
Q Consensus 168 v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~--r~l~~~~~ 215 (239)
+.+.++. .+|+|||+|.+.++|.+|+..|||..+.+ ..|++.++
T Consensus 126 v~i~~~~----~~~~afVef~~~~~A~~A~~~Lng~~i~~~~~~l~v~~s 171 (481)
T TIGR01649 126 IVTFTKN----NVFQALVEFESVNSAQHAKAALNGADIYNGCCTLKIEYA 171 (481)
T ss_pred EEEEecC----CceEEEEEECCHHHHHHHHHHhcCCcccCCceEEEEEEe
Confidence 9988763 24799999999999999999999999954 57777655
No 23
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.89 E-value=4.6e-22 Score=180.27 Aligned_cols=160 Identities=13% Similarity=0.268 Sum_probs=131.0
Q ss_pred eeEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEEEe
Q psy14193 24 LKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRF 103 (239)
Q Consensus 24 ~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV~f 103 (239)
.+|||+++...... ++|+++|++||.|..+. ++.+..++.++|||||+|
T Consensus 296 ~~l~v~nlp~~~~~--------------~~l~~~f~~~G~i~~~~-----------------~~~~~~~g~~~g~afv~f 344 (509)
T TIGR01642 296 DRIYIGNLPLYLGE--------------DQIKELLESFGDLKAFN-----------------LIKDIATGLSKGYAFCEY 344 (509)
T ss_pred CEEEEeCCCCCCCH--------------HHHHHHHHhcCCeeEEE-----------------EEecCCCCCcCeEEEEEE
Confidence 56777765444333 59999999999999987 355677889999999999
Q ss_pred CCHHHHHHHHH-hCCCccCCeeEEEeccCCCCC-----------------------------CCCcEEEEcCCCCCC---
Q psy14193 104 KNLESVEKALE-MNGHVIDEHTIRVDKALTTTK-----------------------------SNSHSIFIGNIPFEA--- 150 (239)
Q Consensus 104 ~~~e~a~~Ai~-~~~~~l~g~~i~v~~~~~~~~-----------------------------~~~~~l~V~nLp~~~--- 150 (239)
.+.++|..|++ +||..++|+.|.|.++..... .+..+|++.|++...
T Consensus 345 ~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~~l~N~~~~~~l~ 424 (509)
T TIGR01642 345 KDPSVTDVAIAALNGKDTGDNKLHVQRACVGANQATIDTSNGMAPVTLLAKALSQSILQIGGKPTKVVQLTNLVTGDDLM 424 (509)
T ss_pred CCHHHHHHHHHHcCCCEECCeEEEEEECccCCCCCCccccccccccccccccchhhhccccCCCceEEEeccCCchhHhc
Confidence 99999999999 999999999999988742211 125778999996421
Q ss_pred -------cHHHHHHHhhcCCCeeEEEEeecC---CCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeCC
Q psy14193 151 -------EEEELRKAFESCGEIDNVRLIRDQ---HTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQH 214 (239)
Q Consensus 151 -------t~~~l~~~F~~~G~i~~v~i~~~~---~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~~ 214 (239)
..++|+++|++||.|..|.|+++. .++.+.|++||+|.+.++|.+|+..|||..++|+.|.+..
T Consensus 425 ~d~~~~~~~edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~gr~v~~~~ 498 (509)
T TIGR01642 425 DDEEYEEIYEDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKFNDRVVVAAF 498 (509)
T ss_pred CcchHHHHHHHHHHHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 236899999999999999998753 3455689999999999999999999999999999998853
No 24
>KOG0127|consensus
Probab=99.89 E-value=2.3e-22 Score=173.76 Aligned_cols=163 Identities=18% Similarity=0.291 Sum_probs=142.1
Q ss_pred ccceeEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEE
Q psy14193 21 MSKLKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAY 100 (239)
Q Consensus 21 ~~~~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~af 100 (239)
++|..++|+......... +|.++|+.+|+|..|. +..+..++.++||||
T Consensus 3 ~~g~TlfV~~lp~~~~~~--------------qL~e~FS~vGPik~~~-----------------vVt~~gs~~~RGfgf 51 (678)
T KOG0127|consen 3 KSGATLFVSRLPFSSTGE--------------QLEEFFSYVGPIKHAV-----------------VVTNKGSSEKRGFGF 51 (678)
T ss_pred CCCceEEEecCCCccchh--------------HHHHhhhcccCcceeE-----------------EecCCCcccccCccc
Confidence 466888988776665544 9999999999999876 445566788999999
Q ss_pred EEeCCHHHHHHHHH-hCCCccCCeeEEEeccCCCCCC---------------------------CCcEEEEcCCCCCCcH
Q psy14193 101 VRFKNLESVEKALE-MNGHVIDEHTIRVDKALTTTKS---------------------------NSHSIFIGNIPFEAEE 152 (239)
Q Consensus 101 V~f~~~e~a~~Ai~-~~~~~l~g~~i~v~~~~~~~~~---------------------------~~~~l~V~nLp~~~t~ 152 (239)
|.|+-.|++++|++ .++..+.|+.|.|.++.++... +...|.|.|||+.+.+
T Consensus 52 VtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~R~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~ 131 (678)
T KOG0127|consen 52 VTFAMEEDVQRALAETEQSKFEGRILNVDPAKKRARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKK 131 (678)
T ss_pred eeeehHhHHHHHHHHhhcCcccceecccccccccccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCc
Confidence 99999999999999 9999999999999887644321 1678999999999999
Q ss_pred HHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeCCC
Q psy14193 153 EELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHT 215 (239)
Q Consensus 153 ~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~~~ 215 (239)
.+|..+|+.||.|..+.|++...++ -.|||||.|....+|..|+..+||..+.||.+-|.|+
T Consensus 132 ~dLk~vFs~~G~V~Ei~IP~k~dgk-lcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWA 193 (678)
T KOG0127|consen 132 PDLKNVFSNFGKVVEIVIPRKKDGK-LCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWA 193 (678)
T ss_pred HHHHHHHhhcceEEEEEcccCCCCC-ccceEEEEEeeHHHHHHHHHhccCceecCceeEEeee
Confidence 9999999999999999999886444 4599999999999999999999999999999999886
No 25
>KOG0117|consensus
Probab=99.89 E-value=1.8e-22 Score=170.80 Aligned_cols=181 Identities=18% Similarity=0.197 Sum_probs=148.0
Q ss_pred hhcccccccccccc-cceeEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccCCc-eeEEEEeecccccCCCccceee
Q psy14193 8 LSLTMIPTQNRNLM-SKLKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGE-VETVRFRSVPVADITLPRKACI 85 (239)
Q Consensus 8 ~~~~~~~~~n~~~~-~~~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~-I~~v~l~~~~~~~~~~~~~~~~ 85 (239)
.++.+|..||+..+ .||.|.|...+.+...- ....+|+...++|.+.|++.++ |.+|.| +..+
T Consensus 137 ~Aq~Aik~lnn~Eir~GK~igvc~Svan~RLF---iG~IPK~k~keeIlee~~kVteGVvdViv---y~~p--------- 201 (506)
T KOG0117|consen 137 EAQEAIKELNNYEIRPGKLLGVCVSVANCRLF---IGNIPKTKKKEEILEEMKKVTEGVVDVIV---YPSP--------- 201 (506)
T ss_pred HHHHHHHHhhCccccCCCEeEEEEeeecceeE---eccCCccccHHHHHHHHHhhCCCeeEEEE---ecCc---------
Confidence 46778999998855 78888877665553332 2233566666899999999997 888874 2222
Q ss_pred ecccccCCCCcceEEEEeCCHHHHHHHHH--hCC-CccCCeeEEEeccCCCCCCC------CcEEEEcCCCCCCcHHHHH
Q psy14193 86 KMNKVHEKRTNMNAYVRFKNLESVEKALE--MNG-HVIDEHTIRVDKALTTTKSN------SHSIFIGNIPFEAEEEELR 156 (239)
Q Consensus 86 ~~~~~~t~~~~G~afV~f~~~e~a~~Ai~--~~~-~~l~g~~i~v~~~~~~~~~~------~~~l~V~nLp~~~t~~~l~ 156 (239)
.+..+++|||||+|.+...|.-|-. +++ ..+.|..+.|.|+.+..+.. -+.|||.||+.++|++.|+
T Consensus 202 ----~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~tVdWAep~~e~ded~ms~VKvLYVRNL~~~tTeE~lk 277 (506)
T KOG0117|consen 202 ----DDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAITVDWAEPEEEPDEDTMSKVKVLYVRNLMESTTEETLK 277 (506)
T ss_pred ----cccccccceEEEEeecchhHHHHHhhccCCceeecCCcceeeccCcccCCChhhhhheeeeeeeccchhhhHHHHH
Confidence 1345789999999999999999988 443 35689999999999988765 6789999999999999999
Q ss_pred HHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeCCC
Q psy14193 157 KAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHT 215 (239)
Q Consensus 157 ~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~~~ 215 (239)
++|+.||.|.+|..++| ||||+|.+.++|.+|+..+||+.++|..|-+-.+
T Consensus 278 ~~F~~~G~veRVkk~rD--------YaFVHf~eR~davkAm~~~ngkeldG~~iEvtLA 328 (506)
T KOG0117|consen 278 KLFNEFGKVERVKKPRD--------YAFVHFAEREDAVKAMKETNGKELDGSPIEVTLA 328 (506)
T ss_pred HHHHhccceEEeecccc--------eeEEeecchHHHHHHHHHhcCceecCceEEEEec
Confidence 99999999999988876 9999999999999999999999999999987533
No 26
>KOG0148|consensus
Probab=99.87 E-value=1.7e-21 Score=155.45 Aligned_cols=150 Identities=23% Similarity=0.454 Sum_probs=123.2
Q ss_pred ceeEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEEE
Q psy14193 23 KLKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVR 102 (239)
Q Consensus 23 ~~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV~ 102 (239)
.|.+||+++-+....+ -|..+|++.|+|.+|++ +. |
T Consensus 6 prtlyvgnld~~vte~--------------~i~~lf~qig~v~~~k~---i~--------------~------------- 41 (321)
T KOG0148|consen 6 PRTLYVGNLDSTVTED--------------FIATLFNQIGSVTKTKV---IF--------------D------------- 41 (321)
T ss_pred CceEEeeccChhhHHH--------------HHHHHHHhcccccccee---eh--------------h-------------
Confidence 5788999876665544 78899999999999884 11 1
Q ss_pred eCCHHHHHHHHHhCCCccCCeeEEEeccCCC------CCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCC
Q psy14193 103 FKNLESVEKALEMNGHVIDEHTIRVDKALTT------TKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHT 176 (239)
Q Consensus 103 f~~~e~a~~Ai~~~~~~l~g~~i~v~~~~~~------~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~t 176 (239)
.+.|.|+..+ .......+||+.|...++-++|++.|.+||+|.++++++|..|
T Consensus 42 ---------------------e~~v~wa~~p~nQsk~t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T 100 (321)
T KOG0148|consen 42 ---------------------ELKVNWATAPGNQSKPTSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNT 100 (321)
T ss_pred ---------------------hhccccccCcccCCCCccccceeEEehhcchhcchHHHHHHhccccccccceEeecccC
Confidence 2222222211 1112567999999999999999999999999999999999999
Q ss_pred CCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeCCCCC-C-------------------------------------
Q psy14193 177 NIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNI-G------------------------------------- 218 (239)
Q Consensus 177 g~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~~~~~-~------------------------------------- 218 (239)
+++||||||.|-+.++|..|+..|||.+++.|.||-.|+.+ +
T Consensus 101 ~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATRKp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~ 180 (321)
T KOG0148|consen 101 GKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATRKPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDL 180 (321)
T ss_pred CcccceeEEeccchHHHHHHHHHhCCeeeccceeeccccccCccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHH
Confidence 99999999999999999999999999999999998765421 1
Q ss_pred -------------------cceEEEEeCChHHHHhhhh
Q psy14193 219 -------------------KGFGYVNFKVSFTTLSSIF 237 (239)
Q Consensus 219 -------------------~G~~fv~f~~~~~a~~a~~ 237 (239)
+||+||.|+++++|..||-
T Consensus 181 mr~~Fs~fG~I~EVRvFk~qGYaFVrF~tkEaAahAIv 218 (321)
T KOG0148|consen 181 MRQTFSPFGPIQEVRVFKDQGYAFVRFETKEAAAHAIV 218 (321)
T ss_pred HHHhcccCCcceEEEEecccceEEEEecchhhHHHHHH
Confidence 9999999999999999984
No 27
>KOG0109|consensus
Probab=99.86 E-value=5.8e-22 Score=159.61 Aligned_cols=143 Identities=20% Similarity=0.358 Sum_probs=128.3
Q ss_pred eEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEEEeC
Q psy14193 25 KVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFK 104 (239)
Q Consensus 25 ~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV~f~ 104 (239)
++|||++..+.... +|+.+|++||+|++|.+ + +.||||..+
T Consensus 4 KLFIGNLp~~~~~~--------------elr~lFe~ygkVlECDI---v----------------------KNYgFVHiE 44 (346)
T KOG0109|consen 4 KLFIGNLPREATEQ--------------ELRSLFEQYGKVLECDI---V----------------------KNYGFVHIE 44 (346)
T ss_pred chhccCCCcccchH--------------HHHHHHHhhCceEeeee---e----------------------cccceEEee
Confidence 56777665554443 99999999999999994 2 249999999
Q ss_pred CHHHHHHHHH-hCCCccCCeeEEEeccCCCCCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEE
Q psy14193 105 NLESVEKALE-MNGHVIDEHTIRVDKALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFG 183 (239)
Q Consensus 105 ~~e~a~~Ai~-~~~~~l~g~~i~v~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~ 183 (239)
++..|+.||. ||+..|+|..|.|..++.+ .+.+.+++|+|+.+.++.++++..|++||++..|.+++| |+
T Consensus 45 dktaaedairNLhgYtLhg~nInVeaSksK-sk~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd--------y~ 115 (346)
T KOG0109|consen 45 DKTAAEDAIRNLHGYTLHGVNINVEASKSK-SKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD--------YA 115 (346)
T ss_pred cccccHHHHhhcccceecceEEEEEecccc-CCCccccccCCCCccccCHHHhhhhcccCCceeeeeecc--------ee
Confidence 9999999999 9999999999999988776 445789999999999999999999999999999999866 89
Q ss_pred EEEecChHHHHHHHHHhCCcEeeEEEEeeCCC
Q psy14193 184 YVNFKAEEEELRKAFESCGEIDNVRLIRDQHT 215 (239)
Q Consensus 184 fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~~~ 215 (239)
||.|...++|..|+..++|.++.|+.++|+.+
T Consensus 116 fvh~d~~eda~~air~l~~~~~~gk~m~vq~s 147 (346)
T KOG0109|consen 116 FVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLS 147 (346)
T ss_pred EEEEeeccchHHHHhcccccccccceeeeeee
Confidence 99999999999999999999999999999865
No 28
>KOG0146|consensus
Probab=99.86 E-value=9.4e-22 Score=156.81 Aligned_cols=162 Identities=22% Similarity=0.331 Sum_probs=143.9
Q ss_pred cceeEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEE
Q psy14193 22 SKLKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYV 101 (239)
Q Consensus 22 ~~~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV 101 (239)
.+||+|||.+...+..+ |++.+|..||+|++|. +...++|. ++|+|||
T Consensus 18 ~drklfvgml~kqq~e~--------------dvrrlf~pfG~~~e~t---vlrg~dg~---------------sKGCAFV 65 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSED--------------DVRRLFQPFGNIEECT---VLRGPDGN---------------SKGCAFV 65 (371)
T ss_pred cchhhhhhhhcccccHH--------------HHHHHhcccCCcceeE---EecCCCCC---------------CCCceEE
Confidence 67899999887776665 9999999999999999 45555554 4589999
Q ss_pred EeCCHHHHHHHHH-hCCCcc---CCeeEEEeccCCCCCC-----------------------------------------
Q psy14193 102 RFKNLESVEKALE-MNGHVI---DEHTIRVDKALTTTKS----------------------------------------- 136 (239)
Q Consensus 102 ~f~~~e~a~~Ai~-~~~~~l---~g~~i~v~~~~~~~~~----------------------------------------- 136 (239)
.|.+..+|..||. ++|..- -...+.|++++..+++
T Consensus 66 Kf~s~~eAqaAI~aLHgSqTmpGASSSLVVK~ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~a 145 (371)
T KOG0146|consen 66 KFSSHAEAQAAINALHGSQTMPGASSSLVVKFADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLA 145 (371)
T ss_pred EeccchHHHHHHHHhcccccCCCCccceEEEeccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHH
Confidence 9999999999999 998754 3467888888877775
Q ss_pred --------------------------------------------------------------------------------
Q psy14193 137 -------------------------------------------------------------------------------- 136 (239)
Q Consensus 137 -------------------------------------------------------------------------------- 136 (239)
T Consensus 146 t~~~~~L~p~~~~~~~~mQ~~aA~~angl~A~Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy 225 (371)
T KOG0146|consen 146 TVAGPYLSPMAAFAAAQMQQMAALNANGLAAAPVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVY 225 (371)
T ss_pred hhcccccChhhhhHHHHHHHHHHHhhcccccCCcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHh
Confidence
Q ss_pred ----------------------------------------------------------CCcEEEEcCCCCCCcHHHHHHH
Q psy14193 137 ----------------------------------------------------------NSHSIFIGNIPFEAEEEELRKA 158 (239)
Q Consensus 137 ----------------------------------------------------------~~~~l~V~nLp~~~t~~~l~~~ 158 (239)
+.|+|||-.||.+.++.+|.++
T Consensus 226 ~ng~~pypaQsp~va~~lq~a~~g~~~Y~Aaypaays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQm 305 (371)
T KOG0146|consen 226 ANGLHPYPAQSPTVADPLQQAYAGVQQYAAAYPAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQM 305 (371)
T ss_pred hcCCccCCCCCccccchhhhhhhhHHHHhhhcchhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHH
Confidence 2799999999999999999999
Q ss_pred hhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeCCC
Q psy14193 159 FESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHT 215 (239)
Q Consensus 159 F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~~~ 215 (239)
|-+||.|.+.++.-|+.|+.+|.||||.|.++.+|+.|+..|||..++-+.|+|+..
T Consensus 306 F~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQLK 362 (371)
T KOG0146|consen 306 FLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLK 362 (371)
T ss_pred hccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhhhc
Confidence 999999999999999999999999999999999999999999999999999998754
No 29
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.86 E-value=1.7e-20 Score=167.93 Aligned_cols=178 Identities=16% Similarity=0.267 Sum_probs=138.6
Q ss_pred ccccccccceeEEeehhhHhhhhhcCCCcch---hh------------chhHHHHHHhcccCCceeEEEEeecccccCCC
Q psy14193 15 TQNRNLMSKLKVFLNIWKMALKLKMNPSLTK---SK------------NHALSSVTSMFKPYGEVETVRFRSVPVADITL 79 (239)
Q Consensus 15 ~~n~~~~~~~~v~v~~~~~~~~~~~~~~~~~---~k------------~~r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~ 79 (239)
.+||+.+.|+.|.|................. .+ ....++|+++|++||.|.+|.+
T Consensus 149 ~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~---------- 218 (457)
T TIGR01622 149 ALTGQMLLGRPIIVQSSQAEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQL---------- 218 (457)
T ss_pred HhCCCEECCeeeEEeecchhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEE----------
Confidence 5899999999999876544322221100000 01 1222899999999999999884
Q ss_pred ccceeeecccccCCCCcceEEEEeCCHHHHHHHHH-hCCCccCCeeEEEeccCCCC------------------------
Q psy14193 80 PRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALE-MNGHVIDEHTIRVDKALTTT------------------------ 134 (239)
Q Consensus 80 ~~~~~~~~~~~~t~~~~G~afV~f~~~e~a~~Ai~-~~~~~l~g~~i~v~~~~~~~------------------------ 134 (239)
..+..++.++|||||+|.+.++|.+|++ +||..+.|++|.|.++....
T Consensus 219 -------~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (457)
T TIGR01622 219 -------HRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQDSTYLLDAANTFEDIDKQQQMGKNLNT 291 (457)
T ss_pred -------EEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccCCCccccchhhhccccccccCCcCCCc
Confidence 4566778889999999999999999999 99999999999999843110
Q ss_pred -------------------------------------------------------------------CCCCcEEEEcCCC
Q psy14193 135 -------------------------------------------------------------------KSNSHSIFIGNIP 147 (239)
Q Consensus 135 -------------------------------------------------------------------~~~~~~l~V~nLp 147 (239)
.....+|+|.|+.
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~n~~ 371 (457)
T TIGR01622 292 EEREQLMEKLDRDDGDGGLLIPGTGSKIALMQKLQRDGIIDPNIPSRYATGALAIMARNSFVPSTNNNLATTCLVLSNMF 371 (457)
T ss_pred cchHHHHHhhccCCCCccccCCCccchhhhhccccccccccccccccccccccccccCCCCCCcccCCCCCcEEEEecCC
Confidence 0114678888885
Q ss_pred CCCc----------HHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeC
Q psy14193 148 FEAE----------EEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQ 213 (239)
Q Consensus 148 ~~~t----------~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~ 213 (239)
...+ .++|++.|++||+|..+.+.. ..+.|++||+|.+.++|..|+..|||..++|+.|.+.
T Consensus 372 ~~~~~~~~~~~~~~~~dv~~e~~k~G~v~~v~v~~----~~~~G~~fV~F~~~e~A~~A~~~lnGr~f~gr~i~~~ 443 (457)
T TIGR01622 372 DPATEEEPNFDNEILDDVKEECSKYGGVVHIYVDT----KNSAGKIYLKFSSVDAALAAFQALNGRYFGGKMITAA 443 (457)
T ss_pred CCcccccchHHHHHHHHHHHHHHhcCCeeEEEEeC----CCCceeEEEEECCHHHHHHHHHHhcCcccCCeEEEEE
Confidence 5443 378999999999999998863 3467999999999999999999999999999999985
No 30
>KOG0147|consensus
Probab=99.85 E-value=1.4e-21 Score=169.36 Aligned_cols=145 Identities=28% Similarity=0.447 Sum_probs=132.2
Q ss_pred HHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEEEeCCHHHHHHHHHhCCCccCCeeEEEeccC
Q psy14193 52 SSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKAL 131 (239)
Q Consensus 52 ~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV~f~~~e~a~~Ai~~~~~~l~g~~i~v~~~~ 131 (239)
.+|.++|+.+|+|.+|+ ++.|..+++++|.|||+|.+.+++..|+.+.|..+.|.+|.|....
T Consensus 194 RdL~efFs~~gkVrdVr-----------------iI~Dr~s~rskgi~Yvef~D~~sVp~aiaLsGqrllg~pv~vq~sE 256 (549)
T KOG0147|consen 194 RDLEEFFSIVGKVRDVR-----------------IIGDRNSRRSKGIAYVEFCDEQSVPLAIALSGQRLLGVPVIVQLSE 256 (549)
T ss_pred hhHHHHHHhhcCcceeE-----------------eeccccchhhcceeEEEEecccchhhHhhhcCCcccCceeEecccH
Confidence 89999999999999998 4678889999999999999999999999999999999999998754
Q ss_pred CCCCC---------------CCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHH
Q psy14193 132 TTTKS---------------NSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRK 196 (239)
Q Consensus 132 ~~~~~---------------~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a 196 (239)
..... +...+||+||.+++++++|+.+|++||.|..|.+..|..||.++|||||+|.+.++|.+|
T Consensus 257 aeknr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a 336 (549)
T KOG0147|consen 257 AEKNRAANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKA 336 (549)
T ss_pred HHHHHHHhccccccccccccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHH
Confidence 22211 123399999999999999999999999999999999988999999999999999999999
Q ss_pred HHHhCCcEeeEEEEeeC
Q psy14193 197 AFESCGEIDNVRLIRDQ 213 (239)
Q Consensus 197 ~~~~~g~~~~~r~l~~~ 213 (239)
+..+||..+-|+.++|.
T Consensus 337 ~e~lngfelAGr~ikV~ 353 (549)
T KOG0147|consen 337 LEQLNGFELAGRLIKVS 353 (549)
T ss_pred HHHhccceecCceEEEE
Confidence 99999999999999974
No 31
>KOG0144|consensus
Probab=99.85 E-value=1.6e-21 Score=164.36 Aligned_cols=78 Identities=21% Similarity=0.359 Sum_probs=75.2
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeCCC
Q psy14193 138 SHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHT 215 (239)
Q Consensus 138 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~~~ 215 (239)
...+||.+||.+.-+.+|-..|.+||.|.+.++..|+.|+.++.|+||.|++..+|..|+..|||..++.+.++|+..
T Consensus 424 GanlfiyhlPqefgdq~l~~~f~pfG~Vlsakvfidk~tnlskcfgfvSyen~~sa~~aI~amngfQig~KrlkVQlk 501 (510)
T KOG0144|consen 424 GANLFIYHLPQEFGDQDLIATFQPFGGVLSAKVFIDKVTNLSKCFGFVSYENAQSAQNAISAMNGFQIGSKRLKVQLK 501 (510)
T ss_pred ccceeeeeCchhhhhHHHHHHhccccceeEEEEEEecccCHhhhcCcccccchhhhHHHHHHhcchhhccccceEEee
Confidence 688999999999999999999999999999999999999999999999999999999999999999999999999854
No 32
>KOG4205|consensus
Probab=99.83 E-value=1.1e-20 Score=158.08 Aligned_cols=159 Identities=23% Similarity=0.405 Sum_probs=135.7
Q ss_pred cceeEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEE
Q psy14193 22 SKLKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYV 101 (239)
Q Consensus 22 ~~~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV 101 (239)
...+++++...+....+ .|+++|++||+|.+|. +|+|+.+++++||+||
T Consensus 5 ~~~KlfiGgisw~ttee--------------~Lr~yf~~~Gev~d~~-----------------vm~d~~t~rsrgFgfv 53 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEE--------------SLREYFSQFGEVTDCV-----------------VMRDPSTGRSRGFGFV 53 (311)
T ss_pred CCcceeecCcCccccHH--------------HHHHHhcccCceeeEE-----------------EeccCCCCCcccccce
Confidence 45678887776665554 9999999999999976 7899999999999999
Q ss_pred EeCCHHHHHHHHHhCCCccCCeeEEEeccCCCCCCC-------CcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecC
Q psy14193 102 RFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKSN-------SHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQ 174 (239)
Q Consensus 102 ~f~~~e~a~~Ai~~~~~~l~g~~i~v~~~~~~~~~~-------~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~ 174 (239)
+|++++.+..++....+.++|+.|.+..+.+..... ...+||++||.+++++++++.|++||.|..+.++.|.
T Consensus 54 ~f~~~~~v~~vl~~~~h~~dgr~ve~k~av~r~~~~~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~ 133 (311)
T KOG4205|consen 54 TFATPEGVDAVLNARTHKLDGRSVEPKRAVSREDQTKVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDK 133 (311)
T ss_pred ecCCCcchheeecccccccCCccccceeccCcccccccccccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecc
Confidence 999999999999877788999999999998776543 5699999999999999999999999999999999999
Q ss_pred CCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEee
Q psy14193 175 HTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRD 212 (239)
Q Consensus 175 ~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~ 212 (239)
.+..++||+||.|.+++ +.+.+....-+.+.++.+.|
T Consensus 134 ~~~~~rgFgfv~~~~e~-sVdkv~~~~f~~~~gk~vev 170 (311)
T KOG4205|consen 134 TTSRPRGFGFVTFDSED-SVDKVTLQKFHDFNGKKVEV 170 (311)
T ss_pred cccccccceeeEecccc-ccceecccceeeecCceeeE
Confidence 99999999999999999 66666554444444444444
No 33
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.81 E-value=3.4e-19 Score=152.94 Aligned_cols=101 Identities=21% Similarity=0.394 Sum_probs=89.8
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEee----
Q psy14193 137 NSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRD---- 212 (239)
Q Consensus 137 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~---- 212 (239)
..++|||+|||+++|+++|+++|+.||+|.+|+|+.|..++.++|||||+|.++++|.+|+..++|..+.++.|++
T Consensus 106 ~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~a~ 185 (346)
T TIGR01659 106 SGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSYAR 185 (346)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeeccc
Confidence 3789999999999999999999999999999999999999999999999999999999999888877665555543
Q ss_pred -------------------------------------------CCCCCCcceEEEEeCChHHHHhhhh
Q psy14193 213 -------------------------------------------QHTNIGKGFGYVNFKVSFTTLSSIF 237 (239)
Q Consensus 213 -------------------------------------------~~~~~~~G~~fv~f~~~~~a~~a~~ 237 (239)
+.+++++|||||+|.++++|.+||.
T Consensus 186 p~~~~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~ 253 (346)
T TIGR01659 186 PGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAIS 253 (346)
T ss_pred ccccccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHH
Confidence 3455668999999999999999985
No 34
>KOG0110|consensus
Probab=99.81 E-value=9.7e-20 Score=161.96 Aligned_cols=151 Identities=23% Similarity=0.368 Sum_probs=129.6
Q ss_pred HHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEEEeCCHHHHHHHHH-hCCCccCCeeEEEecc
Q psy14193 52 SSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALE-MNGHVIDEHTIRVDKA 130 (239)
Q Consensus 52 ~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV~f~~~e~a~~Ai~-~~~~~l~g~~i~v~~~ 130 (239)
++|..+|.+.|.|.++.| +..++. .+--.|.|||||+|.++++|+.|++ |+|+.++|+.|.|..+
T Consensus 530 e~l~~~F~k~G~VlS~~I---~kkkd~-----------~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S 595 (725)
T KOG0110|consen 530 EDLEDLFSKQGTVLSIEI---SKKKDP-----------ANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKIS 595 (725)
T ss_pred hHHHHHHHhcCeEEEEEE---eccccc-----------cccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEec
Confidence 899999999999999985 222111 0123477999999999999999999 9999999999999888
Q ss_pred CCCCC----------CCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHh
Q psy14193 131 LTTTK----------SNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFES 200 (239)
Q Consensus 131 ~~~~~----------~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~ 200 (239)
...+. .....|+|.|+|+.++..+++.+|..||.+.+|+++.-...+.++|||||+|-++.+|..|...+
T Consensus 596 ~~k~~~~~gK~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al 675 (725)
T KOG0110|consen 596 ENKPASTVGKKKSKKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDAL 675 (725)
T ss_pred cCccccccccccccccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhh
Confidence 71111 12579999999999999999999999999999999987556778999999999999999999999
Q ss_pred CCcEeeEEEEeeCCCC
Q psy14193 201 CGEIDNVRLIRDQHTN 216 (239)
Q Consensus 201 ~g~~~~~r~l~~~~~~ 216 (239)
.++.+-||.|..+|+.
T Consensus 676 ~STHlyGRrLVLEwA~ 691 (725)
T KOG0110|consen 676 GSTHLYGRRLVLEWAK 691 (725)
T ss_pred cccceechhhheehhc
Confidence 9999999999998874
No 35
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.78 E-value=1.5e-18 Score=156.96 Aligned_cols=101 Identities=25% Similarity=0.452 Sum_probs=92.2
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeC----
Q psy14193 138 SHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQ---- 213 (239)
Q Consensus 138 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~---- 213 (239)
.++|||+|||+++++++|+++|++||+|.+++++.|+.+|+++|||||+|.+.++|.+|+..+||..++||.|++.
T Consensus 107 ~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~~ 186 (612)
T TIGR01645 107 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSN 186 (612)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccccc
Confidence 6799999999999999999999999999999999999999999999999999999999999999999988887663
Q ss_pred ------------------------------------------------------CCCCCcceEEEEeCChHHHHhhhhc
Q psy14193 214 ------------------------------------------------------HTNIGKGFGYVNFKVSFTTLSSIFS 238 (239)
Q Consensus 214 ------------------------------------------------------~~~~~~G~~fv~f~~~~~a~~a~~~ 238 (239)
.+++++|||||+|.+.++|..||..
T Consensus 187 ~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~a 265 (612)
T TIGR01645 187 MPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIAS 265 (612)
T ss_pred ccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHH
Confidence 1234589999999999999999863
No 36
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.72 E-value=5.1e-17 Score=122.98 Aligned_cols=79 Identities=32% Similarity=0.529 Sum_probs=75.6
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeCCC
Q psy14193 137 NSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHT 215 (239)
Q Consensus 137 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~~~ 215 (239)
..++|||+|||+++++++|+++|++||+|.++.++.|+.++.++|||||+|.+.++|..|+..+||..++++.|++.++
T Consensus 33 ~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a 111 (144)
T PLN03134 33 MSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111 (144)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeC
Confidence 3679999999999999999999999999999999999999999999999999999999999999999999999999765
No 37
>KOG0147|consensus
Probab=99.69 E-value=2.1e-16 Score=137.49 Aligned_cols=183 Identities=18% Similarity=0.281 Sum_probs=139.0
Q ss_pred hhcccccccccccccceeEEeehhhHhhhhhcCCCcchh------hchhH-----------HHHHHhcccCCceeEEEEe
Q psy14193 8 LSLTMIPTQNRNLMSKLKVFLNIWKMALKLKMNPSLTKS------KNHAL-----------SSVTSMFKPYGEVETVRFR 70 (239)
Q Consensus 8 ~~~~~~~~~n~~~~~~~~v~v~~~~~~~~~~~~~~~~~~------k~~r~-----------~~l~~~F~~~G~I~~v~l~ 70 (239)
.+++++-.|+|+.+.|-.|.|........+..+...... +-.|+ ++|+.+|++||+|+.|.
T Consensus 232 ~sVp~aiaLsGqrllg~pv~vq~sEaeknr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~-- 309 (549)
T KOG0147|consen 232 QSVPLAIALSGQRLLGVPVIVQLSEAEKNRAANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQ-- 309 (549)
T ss_pred cchhhHhhhcCCcccCceeEecccHHHHHHHHhccccccccccccchhhhhhcccccCchHHHHhhhccCcccceeee--
Confidence 456677799999999999999877666555333322222 11222 89999999999999988
Q ss_pred ecccccCCCccceeeecccccCCCCcceEEEEeCCHHHHHHHHH-hCCCccCCeeEEEeccCCCCCC-------------
Q psy14193 71 SVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALE-MNGHVIDEHTIRVDKALTTTKS------------- 136 (239)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV~f~~~e~a~~Ai~-~~~~~l~g~~i~v~~~~~~~~~------------- 136 (239)
+++|..||+++|||||+|.+.++|.+|++ +||..|-|+.|+|.........
T Consensus 310 ---------------l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r~~~~~a~~~~~d~D~~ 374 (549)
T KOG0147|consen 310 ---------------LTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTERVDTKEAAVTQFDFDED 374 (549)
T ss_pred ---------------eccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeeeecccccccccccccchh
Confidence 46677899999999999999999999999 9999999999999654322110
Q ss_pred -------------------------------------------------------------------CCcEEEEcCC--C
Q psy14193 137 -------------------------------------------------------------------NSHSIFIGNI--P 147 (239)
Q Consensus 137 -------------------------------------------------------------------~~~~l~V~nL--p 147 (239)
++.++.+.|+ |
T Consensus 375 d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~i~t~C~lL~nMFdp 454 (549)
T KOG0147|consen 375 DRQGLSLGSGGRNQLMAKLAEGKGRSLPSTAISALLLLAKLASAAQFNGVVRVRSVDPADASPAFDIPTQCLLLSNMFDP 454 (549)
T ss_pred hccccccccccHHHHHHHHhccCCccccchhhhHHHhccccchHHhhcCCcCccccCccccccccCCccHHHHHhhcCCc
Confidence 0122333333 1
Q ss_pred CCCc--------HHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEee
Q psy14193 148 FEAE--------EEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRD 212 (239)
Q Consensus 148 ~~~t--------~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~ 212 (239)
...| .+++.+.+++||.|..|.+-.+ +-|+.||.|.+.+.|..|+..+||.++.|++|+-
T Consensus 455 stete~n~d~eI~edV~Eec~k~g~v~hi~vd~n-----s~g~VYvrc~s~~~A~~a~~alhgrWF~gr~Ita 522 (549)
T KOG0147|consen 455 STETEPNWDQEIREDVIEECGKHGKVCHIFVDKN-----SAGCVYVRCPSAEAAGTAVKALHGRWFAGRMITA 522 (549)
T ss_pred ccccCcchhhHHHHHHHHHHHhcCCeeEEEEccC-----CCceEEEecCcHHHHHHHHHHHhhhhhccceeEE
Confidence 1112 2788899999999998877544 3489999999999999999999999999999975
No 38
>KOG0124|consensus
Probab=99.69 E-value=1.6e-16 Score=132.01 Aligned_cols=185 Identities=16% Similarity=0.238 Sum_probs=140.0
Q ss_pred cccccccccccceeEEeehhhHh---hhhhcCCCcchhhchhH-----------HHHHHhcccCCceeEEEEeecccccC
Q psy14193 12 MIPTQNRNLMSKLKVFLNIWKMA---LKLKMNPSLTKSKNHAL-----------SSVTSMFKPYGEVETVRFRSVPVADI 77 (239)
Q Consensus 12 ~~~~~n~~~~~~~~v~v~~~~~~---~~~~~~~~~~~~k~~r~-----------~~l~~~F~~~G~I~~v~l~~~~~~~~ 77 (239)
++..+||.++.|+.+.||....- +......-++..+-.|. +||+++|+.||+|..|+|
T Consensus 171 AlEqMNg~mlGGRNiKVgrPsNmpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~L-------- 242 (544)
T KOG0124|consen 171 ALEQMNGQMLGGRNIKVGRPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQL-------- 242 (544)
T ss_pred HHHHhccccccCccccccCCCCCcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEe--------
Confidence 46789999999999999843211 11110011111122222 899999999999999994
Q ss_pred CCccceeeecccccCCCCcceEEEEeCCHHHHHHHHH-hCCCccCCeeEEEeccCCCCCC--------------------
Q psy14193 78 TLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALE-MNGHVIDEHTIRVDKALTTTKS-------------------- 136 (239)
Q Consensus 78 ~~~~~~~~~~~~~~t~~~~G~afV~f~~~e~a~~Ai~-~~~~~l~g~~i~v~~~~~~~~~-------------------- 136 (239)
-+++.++.++||||++|.+..+...|+. ||-..++|+.++|..+..++..
T Consensus 243 ---------Ar~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~vTPP~aLl~Pat~s~~P~aaaVAaAA 313 (544)
T KOG0124|consen 243 ---------ARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVTPPDALLQPATVSAIPAAAAVAAAA 313 (544)
T ss_pred ---------eccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEecccccCCCchhcCCCCcccCchHHHHHHHH
Confidence 4456667889999999999999999999 9999999999999887655542
Q ss_pred --------------------------------------------------------------------------------
Q psy14193 137 -------------------------------------------------------------------------------- 136 (239)
Q Consensus 137 -------------------------------------------------------------------------------- 136 (239)
T Consensus 314 aTAKi~A~eAvAg~avlg~~G~~~~vSpA~~aa~p~~~l~qa~~a~~~pgvi~~vtP~~P~iP~~i~p~g~v~P~LA~pp 393 (544)
T KOG0124|consen 314 ATAKIMAAEAVAGSAVLGTVGAPGLVSPAPRAAQPLGTLPQAVMAAQAPGVITGVTPARPPIPVTIPPVGVVNPILASPP 393 (544)
T ss_pred HHHHHHHHHHhccCCcccccCCccccCccccccCCCCCccccchhccCCceeccCCCCCCCCCccCCCcceechhhcCCC
Confidence
Q ss_pred ---------------------------------------------------CCcEEEEcCC--CCCCc---HHHHHHHhh
Q psy14193 137 ---------------------------------------------------NSHSIFIGNI--PFEAE---EEELRKAFE 160 (239)
Q Consensus 137 ---------------------------------------------------~~~~l~V~nL--p~~~t---~~~l~~~F~ 160 (239)
.++.+.++|+ |.+++ +.+|++.++
T Consensus 394 T~g~L~kkkeKe~eelqpkl~~~~~L~~QE~msI~G~sARhlvMqkLmR~~~S~VivLRNMV~P~DiDe~LegEi~EECg 473 (544)
T KOG0124|consen 394 TLGLLEKKKEKEEEELQPKLERPEMLSEQEHMSISGSSARHLVMQKLMRKQESTVIVLRNMVDPKDIDEDLEGEITEECG 473 (544)
T ss_pred chhhcchhhhhhHhhhcccccCHHHhhhhhCccccCccHHHHHHHHHhccccCcEEEEeccCChhhhhhHHHHHHHHHHh
Confidence 1567777887 55554 578999999
Q ss_pred cCCCeeEEEEeecCCCCCC----ceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeC
Q psy14193 161 SCGEIDNVRLIRDQHTNIG----KGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQ 213 (239)
Q Consensus 161 ~~G~i~~v~i~~~~~tg~~----kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~ 213 (239)
+||.|.++.|.....++.. ----||+|+...++.++...++|..++||.+.-.
T Consensus 474 KfG~V~rViI~nekq~e~edaeiiVKIFVefS~~~e~~rak~ALdGRfFgGr~VvAE 530 (544)
T KOG0124|consen 474 KFGAVNRVIIYNEKQGEEEDAEIIVKIFVEFSIASETHRAKQALDGRFFGGRKVVAE 530 (544)
T ss_pred cccceeEEEEEecccccccchhhhheeeeeechhhHHHHHHHhhccceecCceeehh
Confidence 9999999987665433311 1136999999999999999999999999988654
No 39
>KOG0110|consensus
Probab=99.68 E-value=4.2e-16 Score=139.02 Aligned_cols=163 Identities=20% Similarity=0.338 Sum_probs=133.1
Q ss_pred HHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEEEeCCHHHHHHHHH-hCCCccCCeeEEEecc
Q psy14193 52 SSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALE-MNGHVIDEHTIRVDKA 130 (239)
Q Consensus 52 ~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV~f~~~e~a~~Ai~-~~~~~l~g~~i~v~~~ 130 (239)
++|...|..||+|..+.| | +.|. -++|+|.++.+|.+|.. +....+...++++.|+
T Consensus 400 ~elt~~F~~fG~i~rvll---p--~~G~------------------~aiv~fl~p~eAr~Afrklaysr~k~~plyle~a 456 (725)
T KOG0110|consen 400 EELTEAFLRFGEIGRVLL---P--PGGT------------------GAIVEFLNPLEARKAFRKLAYSRFKSAPLYLEWA 456 (725)
T ss_pred HHHHHHhhcccccceeec---C--cccc------------------eeeeeecCccchHHHHHHhchhhhccCccccccC
Confidence 799999999999999853 3 2221 38999999999999999 9998888888877665
Q ss_pred CCCC-------CC--------------------------------------------CCcEEEEcCCCCCCcHHHHHHHh
Q psy14193 131 LTTT-------KS--------------------------------------------NSHSIFIGNIPFEAEEEELRKAF 159 (239)
Q Consensus 131 ~~~~-------~~--------------------------------------------~~~~l~V~nLp~~~t~~~l~~~F 159 (239)
.... .. ..++|||.||++++|.+++...|
T Consensus 457 P~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l~~~F 536 (725)
T KOG0110|consen 457 PEDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLEDLEDLF 536 (725)
T ss_pred hhhhccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhHHHHHH
Confidence 3110 00 02349999999999999999999
Q ss_pred hcCCCeeEEEEeecCCC---CCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeCCCC-C------------------
Q psy14193 160 ESCGEIDNVRLIRDQHT---NIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTN-I------------------ 217 (239)
Q Consensus 160 ~~~G~i~~v~i~~~~~t---g~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~~~~-~------------------ 217 (239)
...|.|.++.|...+.. -.|.|||||+|.+.++|..|+..|+|+++.|+.|.++.+. +
T Consensus 537 ~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~~k~~~~~gK~~~~kk~~tKI 616 (725)
T KOG0110|consen 537 SKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISENKPASTVGKKKSKKKKGTKI 616 (725)
T ss_pred HhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEeccCcccccccccccccccccee
Confidence 99999999988655321 1356999999999999999999999999999999876544 0
Q ss_pred -------------------------------------CcceEEEEeCChHHHHhhhh
Q psy14193 218 -------------------------------------GKGFGYVNFKVSFTTLSSIF 237 (239)
Q Consensus 218 -------------------------------------~~G~~fv~f~~~~~a~~a~~ 237 (239)
.+|||||+|-++++|.+|+.
T Consensus 617 lVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~ 673 (725)
T KOG0110|consen 617 LVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFD 673 (725)
T ss_pred eeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHH
Confidence 18999999999999999984
No 40
>KOG0105|consensus
Probab=99.66 E-value=2.1e-15 Score=114.56 Aligned_cols=143 Identities=15% Similarity=0.275 Sum_probs=118.9
Q ss_pred cceeEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEE
Q psy14193 22 SKLKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYV 101 (239)
Q Consensus 22 ~~~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV 101 (239)
+...|||+++...... .+|+++|.+||.|.+|.|+.. ....+||||
T Consensus 5 ~~~~iyvGNLP~diRe--------------keieDlFyKyg~i~~ieLK~r--------------------~g~ppfafV 50 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIRE--------------KEIEDLFYKYGRIREIELKNR--------------------PGPPPFAFV 50 (241)
T ss_pred ccceEEecCCCcchhh--------------ccHHHHHhhhcceEEEEeccC--------------------CCCCCeeEE
Confidence 4678999987665443 499999999999999997432 223469999
Q ss_pred EeCCHHHHHHHHH-hCCCccCCeeEEEeccCCCCC---------------------------CCCcEEEEcCCCCCCcHH
Q psy14193 102 RFKNLESVEKALE-MNGHVIDEHTIRVDKALTTTK---------------------------SNSHSIFIGNIPFEAEEE 153 (239)
Q Consensus 102 ~f~~~e~a~~Ai~-~~~~~l~g~~i~v~~~~~~~~---------------------------~~~~~l~V~nLp~~~t~~ 153 (239)
+|+++.+|+.||. -+|..++|-.|+|.++..... +....|.|.+||++.+.+
T Consensus 51 eFEd~RDAeDAiygRdGYdydg~rLRVEfprggr~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQ 130 (241)
T KOG0105|consen 51 EFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRGGRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQ 130 (241)
T ss_pred EecCccchhhhhhcccccccCcceEEEEeccCCCcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchH
Confidence 9999999999999 999999999999988764421 126789999999999999
Q ss_pred HHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEe
Q psy14193 154 ELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEID 205 (239)
Q Consensus 154 ~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~ 205 (239)
+|+++...-|.+....+.+| |++.|+|...|+...|+..+....+
T Consensus 131 DLKDHmReaGdvCfadv~rD-------g~GvV~~~r~eDMkYAvr~ld~~~~ 175 (241)
T KOG0105|consen 131 DLKDHMREAGDVCFADVQRD-------GVGVVEYLRKEDMKYAVRKLDDQKF 175 (241)
T ss_pred HHHHHHHhhCCeeeeeeecc-------cceeeeeeehhhHHHHHHhhccccc
Confidence 99999999999999988877 2789999999998889887765543
No 41
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.66 E-value=7.8e-16 Score=101.87 Aligned_cols=70 Identities=34% Similarity=0.663 Sum_probs=67.0
Q ss_pred EEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEe
Q psy14193 141 IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIR 211 (239)
Q Consensus 141 l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~ 211 (239)
|||+|||.++|+++|+++|++||.|..+.+..+ .++.++|+|||+|.+.++|.+|+..++|..++++.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999998 6888999999999999999999999999999999885
No 42
>KOG4206|consensus
Probab=99.63 E-value=6.9e-15 Score=115.46 Aligned_cols=156 Identities=21% Similarity=0.338 Sum_probs=124.9
Q ss_pred cceeEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEE
Q psy14193 22 SKLKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYV 101 (239)
Q Consensus 22 ~~~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV 101 (239)
++ .+||.++..+.+.. +-...|..+|++||.|.+|.. ..|.+.+|-|||
T Consensus 9 n~-TlYInnLnekI~~~----------elkrsL~~LFsqfG~ildI~a--------------------~kt~KmRGQA~V 57 (221)
T KOG4206|consen 9 NG-TLYINNLNEKIKKD----------ELKRSLYLLFSQFGKILDISA--------------------FKTPKMRGQAFV 57 (221)
T ss_pred Cc-eEeehhccccccHH----------HHHHHHHHHHHhhCCeEEEEe--------------------cCCCCccCceEE
Confidence 45 88998877664443 111366779999999999873 236778999999
Q ss_pred EeCCHHHHHHHHH-hCCCccCCeeEEEeccCCCCC---------------------------------------------
Q psy14193 102 RFKNLESVEKALE-MNGHVIDEHTIRVDKALTTTK--------------------------------------------- 135 (239)
Q Consensus 102 ~f~~~e~a~~Ai~-~~~~~l~g~~i~v~~~~~~~~--------------------------------------------- 135 (239)
.|.+.+.|..|+. ++|..+.|+++++.++.....
T Consensus 58 vFk~~~~As~A~r~l~gfpFygK~mriqyA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p 137 (221)
T KOG4206|consen 58 VFKETEAASAALRALQGFPFYGKPMRIQYAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPP 137 (221)
T ss_pred EecChhHHHHHHHHhcCCcccCchhheecccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCC
Confidence 9999999999999 999999999999988753322
Q ss_pred ------CCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEee-EE
Q psy14193 136 ------SNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDN-VR 208 (239)
Q Consensus 136 ------~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~-~r 208 (239)
.+...+++.|||.+++.+.+..+|.+|+....++++... ++.|||+|.+...|.-|...+.|..+. ..
T Consensus 138 ~~~~~~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~-----~~iAfve~~~d~~a~~a~~~lq~~~it~~~ 212 (221)
T KOG4206|consen 138 FLAQMAPPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPR-----SGIAFVEFLSDRQASAAQQALQGFKITKKN 212 (221)
T ss_pred ccccCCCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCC-----CceeEEecchhhhhHHHhhhhccceeccCc
Confidence 124679999999999999999999999999999988653 679999999998777777788887766 44
Q ss_pred EEeeC
Q psy14193 209 LIRDQ 213 (239)
Q Consensus 209 ~l~~~ 213 (239)
.+.+.
T Consensus 213 ~m~i~ 217 (221)
T KOG4206|consen 213 TMQIT 217 (221)
T ss_pred eEEec
Confidence 44443
No 43
>KOG0131|consensus
Probab=99.62 E-value=9.2e-16 Score=116.27 Aligned_cols=101 Identities=26% Similarity=0.354 Sum_probs=88.4
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEee-----
Q psy14193 138 SHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRD----- 212 (239)
Q Consensus 138 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~----- 212 (239)
..+|||+||+..++++.|.++|-+.|+|..+.+++|+.+...+||||++|.++|+|..|+.-+|+..+-||.|+|
T Consensus 9 d~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas~ 88 (203)
T KOG0131|consen 9 DATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKASA 88 (203)
T ss_pred CceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEeccc
Confidence 679999999999999999999999999999999999999999999999999999999999876666555555543
Q ss_pred --------------------------------------------CCCCCCcceEEEEeCChHHHHhhhhc
Q psy14193 213 --------------------------------------------QHTNIGKGFGYVNFKVSFTTLSSIFS 238 (239)
Q Consensus 213 --------------------------------------------~~~~~~~G~~fv~f~~~~~a~~a~~~ 238 (239)
+.++.++|||||.|++.+.+.+||-+
T Consensus 89 ~~~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s 158 (203)
T KOG0131|consen 89 HQKNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGS 158 (203)
T ss_pred ccccccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHH
Confidence 34566799999999999998888753
No 44
>KOG0125|consensus
Probab=99.58 E-value=8.1e-15 Score=120.34 Aligned_cols=99 Identities=25% Similarity=0.470 Sum_probs=85.1
Q ss_pred hCCCccCCeeEEEeccCCCCCCC-CcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHH
Q psy14193 115 MNGHVIDEHTIRVDKALTTTKSN-SHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEE 193 (239)
Q Consensus 115 ~~~~~l~g~~i~v~~~~~~~~~~-~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a 193 (239)
-++...+|..+.+.++...+... .++|+|.|||+...+.||+.+|++||.|.+|.|+.+. .| |||||||+|++.+||
T Consensus 72 ~~~~~t~g~~~~~~~st~s~s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE-RG-SKGFGFVTmen~~da 149 (376)
T KOG0125|consen 72 SNGAPTDGQPIQTQPSTNSSSKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE-RG-SKGFGFVTMENPADA 149 (376)
T ss_pred cCCCCCCCCccccCCCCcCCCCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEecc-CC-CCccceEEecChhhH
Confidence 34555677777777665554443 7899999999999999999999999999999999883 34 899999999999999
Q ss_pred HHHHHHhCCcEeeEEEEeeCCC
Q psy14193 194 LRKAFESCGEIDNVRLIRDQHT 215 (239)
Q Consensus 194 ~~a~~~~~g~~~~~r~l~~~~~ 215 (239)
.+|-.++||.+++||+|.|..+
T Consensus 150 dRARa~LHgt~VEGRkIEVn~A 171 (376)
T KOG0125|consen 150 DRARAELHGTVVEGRKIEVNNA 171 (376)
T ss_pred HHHHHHhhcceeeceEEEEecc
Confidence 9999999999999999999754
No 45
>KOG0122|consensus
Probab=99.58 E-value=7.8e-15 Score=116.06 Aligned_cols=80 Identities=24% Similarity=0.454 Sum_probs=77.3
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeCCCC
Q psy14193 137 NSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTN 216 (239)
Q Consensus 137 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~~~~ 216 (239)
+.++|-|.|||.++++++|+++|.+||.|.++.+.+|+.||.++|||||.|.+.++|++|+..|||.-.+.-+|+|.++.
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwsk 267 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSK 267 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecC
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999874
No 46
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.57 E-value=2.2e-14 Score=95.23 Aligned_cols=70 Identities=33% Similarity=0.603 Sum_probs=64.4
Q ss_pred EEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEe
Q psy14193 141 IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIR 211 (239)
Q Consensus 141 l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~ 211 (239)
|||+|||+++++++|+++|+.||.|..+.+..++. +.++|+|||+|.++++|.+|+...+|..++|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999965 89999999999999999999999999999999874
No 47
>KOG0121|consensus
Probab=99.55 E-value=1e-14 Score=104.50 Aligned_cols=78 Identities=23% Similarity=0.421 Sum_probs=74.6
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeCCC
Q psy14193 138 SHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHT 215 (239)
Q Consensus 138 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~~~ 215 (239)
+++|||+||+..++|++|.++|+.+|+|..|.+-.|+.+..+=|||||+|-+.++|..|+.-++|..++.++|++.+.
T Consensus 36 S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 36 SCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred cceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecc
Confidence 689999999999999999999999999999999999888889999999999999999999999999999999999754
No 48
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.54 E-value=3.3e-14 Score=107.63 Aligned_cols=84 Identities=19% Similarity=0.318 Sum_probs=72.8
Q ss_pred ccceeEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEE
Q psy14193 21 MSKLKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAY 100 (239)
Q Consensus 21 ~~~~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~af 100 (239)
....+|||+.+......+ +|+++|++||+|.+|+ ++.|..|++++||||
T Consensus 32 ~~~~~lfVgnL~~~~te~--------------~L~~~F~~~G~I~~v~-----------------i~~d~~tg~~kGfaF 80 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDA--------------SLRDAFAHFGDVVDAK-----------------VIVDRETGRSRGFGF 80 (144)
T ss_pred CCCCEEEEeCCCCCCCHH--------------HHHHHHhcCCCeEEEE-----------------EEecCCCCCcceEEE
Confidence 345689998877665444 9999999999999988 456777889999999
Q ss_pred EEeCCHHHHHHHHH-hCCCccCCeeEEEeccCCCCC
Q psy14193 101 VRFKNLESVEKALE-MNGHVIDEHTIRVDKALTTTK 135 (239)
Q Consensus 101 V~f~~~e~a~~Ai~-~~~~~l~g~~i~v~~~~~~~~ 135 (239)
|+|.+.++|+.|++ +|+..+.|+.|+|.++.+++.
T Consensus 81 V~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a~~~~~ 116 (144)
T PLN03134 81 VNFNDEGAATAAISEMDGKELNGRHIRVNPANDRPS 116 (144)
T ss_pred EEECCHHHHHHHHHHcCCCEECCEEEEEEeCCcCCC
Confidence 99999999999999 999999999999999976654
No 49
>KOG0149|consensus
Probab=99.52 E-value=2.8e-14 Score=112.49 Aligned_cols=76 Identities=32% Similarity=0.516 Sum_probs=65.7
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeCC
Q psy14193 138 SHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQH 214 (239)
Q Consensus 138 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~~ 214 (239)
-.+||||+|++.++.+.|+++|++||+|++..++.|+.||++||||||+|++.+.|.+|+.. -.-+++||...+..
T Consensus 12 ~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcnl 87 (247)
T KOG0149|consen 12 FTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCNL 87 (247)
T ss_pred EEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccch
Confidence 46899999999999999999999999999999999999999999999999999977777654 34456666665543
No 50
>KOG0126|consensus
Probab=99.52 E-value=1.8e-15 Score=114.61 Aligned_cols=79 Identities=30% Similarity=0.502 Sum_probs=75.3
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeCCC
Q psy14193 137 NSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHT 215 (239)
Q Consensus 137 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~~~ 215 (239)
.+.-|||||||+++|+.+|.-+|++||+|+.|.+++|..||+|+||||++|++..+..-|+-.+||..+.||.|+|.+.
T Consensus 34 dsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 34 DSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred cceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 3678999999999999999999999999999999999999999999999999999888999999999999999999754
No 51
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.49 E-value=1.3e-13 Score=111.97 Aligned_cols=74 Identities=16% Similarity=0.285 Sum_probs=67.3
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeCCC
Q psy14193 138 SHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHT 215 (239)
Q Consensus 138 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~~~ 215 (239)
.++|||+|||+.+|+++|+++|+.||+|.+++++.+.. ++|||||+|.++++|..|+ .++|..+.++.|++..+
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~Al-lLnG~~l~gr~V~Vt~a 77 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETAL-LLSGATIVDQSVTITPA 77 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHH-HhcCCeeCCceEEEEec
Confidence 46999999999999999999999999999999998852 5789999999999888777 59999999999999755
No 52
>KOG0106|consensus
Probab=99.47 E-value=5.8e-14 Score=111.16 Aligned_cols=145 Identities=19% Similarity=0.386 Sum_probs=121.2
Q ss_pred eEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEEEeC
Q psy14193 25 KVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFK 104 (239)
Q Consensus 25 ~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV~f~ 104 (239)
++||+.+...... ++|..+|..||.|.++.+. .||+||+|.
T Consensus 3 rv~vg~~~~~~~~--------------~d~E~~f~~yg~~~d~~mk-------------------------~gf~fv~fe 43 (216)
T KOG0106|consen 3 RVYIGRLPYRARE--------------RDVERFFKGYGKIPDADMK-------------------------NGFGFVEFE 43 (216)
T ss_pred ceeecccCCccch--------------hHHHHHHhhccccccceee-------------------------cccceeccC
Confidence 5677666555444 3999999999999998853 389999999
Q ss_pred CHHHHHHHHH-hCCCccCCeeEEEeccCCC------CC---------------CCCcEEEEcCCCCCCcHHHHHHHhhcC
Q psy14193 105 NLESVEKALE-MNGHVIDEHTIRVDKALTT------TK---------------SNSHSIFIGNIPFEAEEEELRKAFESC 162 (239)
Q Consensus 105 ~~e~a~~Ai~-~~~~~l~g~~i~v~~~~~~------~~---------------~~~~~l~V~nLp~~~t~~~l~~~F~~~ 162 (239)
+..+|+.|+. +|+..+.+..+.|.++... +. ...+.+.+.+++..+.+++|.+.|.++
T Consensus 44 d~rda~Dav~~l~~~~l~~e~~vve~~r~~~~~~g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~ 123 (216)
T KOG0106|consen 44 DPRDADDAVHDLDGKELCGERLVVEHARGKRRGRGRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPA 123 (216)
T ss_pred chhhhhcccchhcCceecceeeeeecccccccccCCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhccc
Confidence 9999999999 9999999988888887731 11 126789999999999999999999999
Q ss_pred CCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeCCCC
Q psy14193 163 GEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTN 216 (239)
Q Consensus 163 G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~~~~ 216 (239)
|.++.... ..+++||+|++.+++.+|+..++|..+.++.|++....
T Consensus 124 g~~~~~~~--------~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~~~~ 169 (216)
T KOG0106|consen 124 GEVTYVDA--------RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISVEKNS 169 (216)
T ss_pred CCCchhhh--------hccccceeehhhhhhhhcchhccchhhcCceeeecccC
Confidence 99855433 35689999999999999999999999999999995443
No 53
>KOG4211|consensus
Probab=99.47 E-value=7.9e-13 Score=114.05 Aligned_cols=138 Identities=23% Similarity=0.314 Sum_probs=108.1
Q ss_pred HHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEEEeCCHHHHHHHHHhCCCccCCeeEEEeccC
Q psy14193 52 SSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKAL 131 (239)
Q Consensus 52 ~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV~f~~~e~a~~Ai~~~~~~l~g~~i~v~~~~ 131 (239)
+||.++|+.++ |+++.+ ...+++..|-|||+|.++|++++|++.+...+..+.|.|-.+.
T Consensus 25 ~ei~~Ff~~~~-I~~~~~-------------------~r~~Gr~sGeA~Ve~~seedv~~AlkkdR~~mg~RYIEVf~~~ 84 (510)
T KOG4211|consen 25 KEILDFFSNCG-IENLEI-------------------PRRNGRPSGEAYVEFTSEEDVEKALKKDRESMGHRYIEVFTAG 84 (510)
T ss_pred HHHHHHHhcCc-eeEEEE-------------------eccCCCcCcceEEEeechHHHHHHHHhhHHHhCCceEEEEccC
Confidence 69999999997 777653 2246788899999999999999999999999999999997764
Q ss_pred CCCCC------------CCcEEEEcCCCCCCcHHHHHHHhhcCCCeeE-EEEeecCCCCCCceEEEEEecChHHHHHHHH
Q psy14193 132 TTTKS------------NSHSIFIGNIPFEAEEEELRKAFESCGEIDN-VRLIRDQHTNIGKGFGYVNFKAEEEELRKAF 198 (239)
Q Consensus 132 ~~~~~------------~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~-v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~ 198 (239)
..+.. ....|-+.+||+.||+++|.++|+..-.+.. +.++.+ ..+++.|-|||+|++.+.|.+|+.
T Consensus 85 ~~e~d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d-~rgR~tGEAfVqF~sqe~ae~Al~ 163 (510)
T KOG4211|consen 85 GAEADWVMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMD-QRGRPTGEAFVQFESQESAEIALG 163 (510)
T ss_pred CccccccccCCCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeecc-CCCCcccceEEEecCHHHHHHHHH
Confidence 43322 2678999999999999999999998754444 445555 467799999999999997777764
Q ss_pred HhCCcEeeEEEEe
Q psy14193 199 ESCGEIDNVRLIR 211 (239)
Q Consensus 199 ~~~g~~~~~r~l~ 211 (239)
-|-..++.|-+-
T Consensus 164 -rhre~iGhRYIE 175 (510)
T KOG4211|consen 164 -RHRENIGHRYIE 175 (510)
T ss_pred -HHHHhhccceEE
Confidence 333344444443
No 54
>KOG0113|consensus
Probab=99.46 E-value=2.3e-13 Score=110.58 Aligned_cols=78 Identities=24% Similarity=0.471 Sum_probs=74.5
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeCC
Q psy14193 137 NSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQH 214 (239)
Q Consensus 137 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~~ 214 (239)
+.+||||+-|+.+++|..|+..|+.||+|..+++++|..||+++|||||+|+++-+...|....+|..|+++.|.|..
T Consensus 100 Py~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDv 177 (335)
T KOG0113|consen 100 PYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDV 177 (335)
T ss_pred ccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEe
Confidence 489999999999999999999999999999999999999999999999999999988899999999999999998863
No 55
>KOG0107|consensus
Probab=99.46 E-value=1.6e-13 Score=103.58 Aligned_cols=73 Identities=23% Similarity=0.372 Sum_probs=68.6
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeCCC
Q psy14193 138 SHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHT 215 (239)
Q Consensus 138 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~~~ 215 (239)
.+.|||+||+..+++.+|...|..||++..+.|-.. +.|||||+|+++.||..|+..|+|..+.|..++|+.+
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn-----PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S 82 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN-----PPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELS 82 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec-----CCCceEEeccCcccHHHHHhhcCCccccCceEEEEee
Confidence 579999999999999999999999999999998776 5889999999999999999999999999999999754
No 56
>smart00362 RRM_2 RNA recognition motif.
Probab=99.45 E-value=7.8e-13 Score=86.96 Aligned_cols=72 Identities=31% Similarity=0.585 Sum_probs=66.8
Q ss_pred EEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeC
Q psy14193 140 SIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQ 213 (239)
Q Consensus 140 ~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~ 213 (239)
+|||+|||..+++++|+++|.+||++..+.+..++ +.++|+|||+|.+.++|.+|+..++|..+.++.++++
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999999998875 7789999999999999999999999999999988763
No 57
>KOG4212|consensus
Probab=99.45 E-value=1.8e-12 Score=110.29 Aligned_cols=143 Identities=20% Similarity=0.316 Sum_probs=120.2
Q ss_pred HHHHHhcc-cCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEEEeCCHHHHHHHHH-hCCCccCCeeEEEec
Q psy14193 52 SSVTSMFK-PYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALE-MNGHVIDEHTIRVDK 129 (239)
Q Consensus 52 ~~l~~~F~-~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV~f~~~e~a~~Ai~-~~~~~l~g~~i~v~~ 129 (239)
++|+++|. +-|+|+-|. +..|.+|+ ++|+|.|+|.++|.+++|++ +|.+.+.|++|.|+.
T Consensus 59 qdLKdLvrekvGev~yve---Ll~D~~GK---------------~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKE 120 (608)
T KOG4212|consen 59 QDLKDLVREKVGEVEYVE---LLFDESGK---------------ARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKE 120 (608)
T ss_pred HhHHHHHHHhcCceEeee---eecccCCC---------------cCCceEEEeeCHHHHHHHHHHhhhccccCceEEEec
Confidence 59999995 789999998 45555554 45899999999999999999 999999999999977
Q ss_pred cCCCCCC-------------------------------------------------------------------------
Q psy14193 130 ALTTTKS------------------------------------------------------------------------- 136 (239)
Q Consensus 130 ~~~~~~~------------------------------------------------------------------------- 136 (239)
....+..
T Consensus 121 d~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~ 200 (608)
T KOG4212|consen 121 DHDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLS 200 (608)
T ss_pred cCchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccch
Confidence 6543221
Q ss_pred -------------CCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCc
Q psy14193 137 -------------NSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGE 203 (239)
Q Consensus 137 -------------~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~ 203 (239)
....+||.||...+....|++.|.-.|.++.+.+-.|+ -|.++|++.++|..+-+|.+|+..+++.
T Consensus 201 ~~Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idK-eG~s~G~~vi~y~hpveavqaIsml~~~ 279 (608)
T KOG4212|consen 201 ASFLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDK-EGNSRGFAVIEYDHPVEAVQAISMLDRQ 279 (608)
T ss_pred hhhhhhccCCCCCccceeeeeccccccchHHHHHHhccceeeeeeceeecc-ccccCCeeEEEecchHHHHHHHHhhccC
Confidence 16789999999999999999999999999999999995 5789999999999999999999999876
Q ss_pred EeeEEEEeeC
Q psy14193 204 IDNVRLIRDQ 213 (239)
Q Consensus 204 ~~~~r~l~~~ 213 (239)
-+..+..+++
T Consensus 280 g~~~~~~~~R 289 (608)
T KOG4212|consen 280 GLFDRRMTVR 289 (608)
T ss_pred CCccccceee
Confidence 5554444443
No 58
>KOG4207|consensus
Probab=99.44 E-value=1.6e-13 Score=106.10 Aligned_cols=78 Identities=24% Similarity=0.443 Sum_probs=75.2
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeCCC
Q psy14193 138 SHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHT 215 (239)
Q Consensus 138 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~~~ 215 (239)
...|-|.||.+-++.++|+.+|++||.|-+|.|++|+.|+.++|||||.|....||.+|+..|+|.+++|+-|+|+.+
T Consensus 13 m~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~a 90 (256)
T KOG4207|consen 13 MTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMA 90 (256)
T ss_pred ceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhh
Confidence 568999999999999999999999999999999999999999999999999999999999999999999999999865
No 59
>KOG1548|consensus
Probab=99.44 E-value=2.3e-12 Score=106.73 Aligned_cols=150 Identities=17% Similarity=0.214 Sum_probs=121.2
Q ss_pred HHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEEEeCCHHHHHHHHH-hCCCccCCeeEEEecc
Q psy14193 52 SSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALE-MNGHVIDEHTIRVDKA 130 (239)
Q Consensus 52 ~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV~f~~~e~a~~Ai~-~~~~~l~g~~i~v~~~ 130 (239)
+++.++|++||-|. .....|.|| +.+-++.. |.-+|-|.+.|-..++++.|++ |++..+.|+.|+|..|
T Consensus 149 dE~~~~~sKcGiI~-------~d~~t~epk--~KlYrd~~-G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~~~rVerA 218 (382)
T KOG1548|consen 149 DEFAEVMSKCGIIM-------RDPQTGEPK--VKLYRDNQ-GKLKGDALCCYIKRESVELAIKILDEDELRGKKLRVERA 218 (382)
T ss_pred HHHHHHHHhcceEe-------ccCCCCCee--EEEEecCC-CCccCceEEEeecccHHHHHHHHhCcccccCcEEEEehh
Confidence 59999999999773 334566776 56666666 8899999999999999999999 9999999999999876
Q ss_pred CCCCC---------------------------------------CCCcEEEEcCCCC----CCc-------HHHHHHHhh
Q psy14193 131 LTTTK---------------------------------------SNSHSIFIGNIPF----EAE-------EEELRKAFE 160 (239)
Q Consensus 131 ~~~~~---------------------------------------~~~~~l~V~nLp~----~~t-------~~~l~~~F~ 160 (239)
.-... +..++|.+.|+=. ..+ +++|++-++
T Consensus 219 kfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~ 298 (382)
T KOG1548|consen 219 KFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECE 298 (382)
T ss_pred hhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHH
Confidence 42111 0168899988732 122 477788899
Q ss_pred cCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeCCC
Q psy14193 161 SCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHT 215 (239)
Q Consensus 161 ~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~~~ 215 (239)
+||.|.++.+.- ..+.|.+-|.|.+.++|..++..|+|.+++||.|.-...
T Consensus 299 K~G~v~~vvv~d----~hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~ 349 (382)
T KOG1548|consen 299 KFGQVRKVVVYD----RHPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIW 349 (382)
T ss_pred HhCCcceEEEec----cCCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEe
Confidence 999999987743 447889999999999999999999999999999987643
No 60
>KOG0109|consensus
Probab=99.43 E-value=2.8e-13 Score=109.77 Aligned_cols=91 Identities=24% Similarity=0.426 Sum_probs=82.4
Q ss_pred cEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeCCC-CC
Q psy14193 139 HSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHT-NI 217 (239)
Q Consensus 139 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~~~-~~ 217 (239)
-+|||+|||..+++.+|+.+|++||.|++|.|+++ ||||..++...+..|+..|+|..+.|-.|.|+.+ ++
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 36999999999999999999999999999999977 8999999999889999999999999999988743 22
Q ss_pred C------------------------------------cceEEEEeCChHHHHhhhh
Q psy14193 218 G------------------------------------KGFGYVNFKVSFTTLSSIF 237 (239)
Q Consensus 218 ~------------------------------------~G~~fv~f~~~~~a~~a~~ 237 (239)
+ ++|+||+|+-.++|..||.
T Consensus 75 sk~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkdy~fvh~d~~eda~~air 130 (346)
T KOG0109|consen 75 SKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKDYAFVHFDRAEDAVEAIR 130 (346)
T ss_pred CCCccccccCCCCccccCHHHhhhhcccCCceeeeeecceeEEEEeeccchHHHHh
Confidence 1 9999999999999999984
No 61
>smart00360 RRM RNA recognition motif.
Probab=99.42 E-value=1.3e-12 Score=85.60 Aligned_cols=70 Identities=37% Similarity=0.635 Sum_probs=65.8
Q ss_pred EcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEee
Q psy14193 143 IGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRD 212 (239)
Q Consensus 143 V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~ 212 (239)
|+|||..+++++|+++|++||+|..+.+..++.++.++|+|||+|.+.++|..|+..++|..++++.+++
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v 70 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKV 70 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEe
Confidence 5799999999999999999999999999998778899999999999999999999999999999998876
No 62
>KOG0146|consensus
Probab=99.41 E-value=9.1e-13 Score=105.72 Aligned_cols=76 Identities=21% Similarity=0.473 Sum_probs=67.6
Q ss_pred CeeEEEeccCCCCCC-CCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHH
Q psy14193 122 EHTIRVDKALTTTKS-NSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAF 198 (239)
Q Consensus 122 g~~i~v~~~~~~~~~-~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~ 198 (239)
+++|.|+++...... +.++|||+-|.+.-.|||++.+|.+||+|.+|.+++.+ .|.+||++||.|.+..+|..|+.
T Consensus 2 nrpiqvkpadsesrg~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~-dg~sKGCAFVKf~s~~eAqaAI~ 78 (371)
T KOG0146|consen 2 NRPIQVKPADSESRGGDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGP-DGNSKGCAFVKFSSHAEAQAAIN 78 (371)
T ss_pred CCCccccccccccCCccchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCC-CCCCCCceEEEeccchHHHHHHH
Confidence 577888888766554 58899999999999999999999999999999999995 79999999999999988888773
No 63
>PLN03213 repressor of silencing 3; Provisional
Probab=99.38 E-value=1.8e-12 Score=111.96 Aligned_cols=75 Identities=17% Similarity=0.336 Sum_probs=68.8
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecCh--HHHHHHHHHhCCcEeeEEEEeeCCC
Q psy14193 138 SHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAE--EEELRKAFESCGEIDNVRLIRDQHT 215 (239)
Q Consensus 138 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~--e~a~~a~~~~~g~~~~~r~l~~~~~ 215 (239)
..+||||||++.+++++|+..|+.||.|.++.|++ .+| ||||||+|.+. .+..+|+..+||..+.|+.|+|..+
T Consensus 10 gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpR--ETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKA 85 (759)
T PLN03213 10 GVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVR--TKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKA 85 (759)
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEec--ccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeec
Confidence 57899999999999999999999999999999994 467 99999999987 5688999999999999999999866
Q ss_pred C
Q psy14193 216 N 216 (239)
Q Consensus 216 ~ 216 (239)
.
T Consensus 86 K 86 (759)
T PLN03213 86 K 86 (759)
T ss_pred c
Confidence 3
No 64
>KOG0122|consensus
Probab=99.36 E-value=1.8e-12 Score=102.80 Aligned_cols=67 Identities=19% Similarity=0.368 Sum_probs=62.4
Q ss_pred hHHHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEEEeCCHHHHHHHHH-hCCCccCCeeEEEe
Q psy14193 50 ALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALE-MNGHVIDEHTIRVD 128 (239)
Q Consensus 50 r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV~f~~~e~a~~Ai~-~~~~~l~g~~i~v~ 128 (239)
|..+|+++|.+||.|..|. +-+|+.||.++|||||.|.+.++|.+||+ |||.-++.-.|+|.
T Consensus 202 ~E~dL~eLf~~fg~i~rvy-----------------lardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvE 264 (270)
T KOG0122|consen 202 REDDLEELFRPFGPITRVY-----------------LARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVE 264 (270)
T ss_pred ChhHHHHHhhccCccceeE-----------------EEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEE
Confidence 3379999999999999987 56789999999999999999999999999 99999999999999
Q ss_pred ccCCC
Q psy14193 129 KALTT 133 (239)
Q Consensus 129 ~~~~~ 133 (239)
|+.|+
T Consensus 265 wskP~ 269 (270)
T KOG0122|consen 265 WSKPS 269 (270)
T ss_pred ecCCC
Confidence 99886
No 65
>KOG1457|consensus
Probab=99.36 E-value=6.9e-12 Score=98.27 Aligned_cols=136 Identities=15% Similarity=0.264 Sum_probs=106.5
Q ss_pred HHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEEEeCCHHHHHHHHH-hCCCccC---CeeEEE
Q psy14193 52 SSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALE-MNGHVID---EHTIRV 127 (239)
Q Consensus 52 ~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV~f~~~e~a~~Ai~-~~~~~l~---g~~i~v 127 (239)
.+|+.+|..|---+.+.|+. + +.....++-+|||.|.+.++|..|+. +||..++ +..+++
T Consensus 49 REiynLFR~f~GYEgslLK~--T--------------sk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhi 112 (284)
T KOG1457|consen 49 REIYNLFRRFHGYEGSLLKY--T--------------SKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHI 112 (284)
T ss_pred HHHHHHhccCCCccceeeee--c--------------cCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEe
Confidence 49999999998777776532 1 11223345799999999999999999 9999884 677888
Q ss_pred eccCCCCCC-----------------------------------------------------------------------
Q psy14193 128 DKALTTTKS----------------------------------------------------------------------- 136 (239)
Q Consensus 128 ~~~~~~~~~----------------------------------------------------------------------- 136 (239)
..++...+.
T Consensus 113 ElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~~P~ 192 (284)
T KOG1457|consen 113 ELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDSKAPS 192 (284)
T ss_pred eehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhhcCCc
Confidence 766533321
Q ss_pred ----------------CCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHh
Q psy14193 137 ----------------NSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFES 200 (239)
Q Consensus 137 ----------------~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~ 200 (239)
.+.+|||.||..+++|++|+.+|+.|.....+++... .| ...+|++|++.+.|..|+..+
T Consensus 193 a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~--~g--~~vaf~~~~~~~~at~am~~l 268 (284)
T KOG1457|consen 193 ANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRAR--GG--MPVAFADFEEIEQATDAMNHL 268 (284)
T ss_pred ccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecC--CC--cceEeecHHHHHHHHHHHHHh
Confidence 1678999999999999999999999988777766432 23 347999999999999999999
Q ss_pred CCcEeeE
Q psy14193 201 CGEIDNV 207 (239)
Q Consensus 201 ~g~~~~~ 207 (239)
.|..+..
T Consensus 269 qg~~~s~ 275 (284)
T KOG1457|consen 269 QGNLLSS 275 (284)
T ss_pred hcceecc
Confidence 9887643
No 66
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.35 E-value=4.3e-12 Score=104.91 Aligned_cols=78 Identities=35% Similarity=0.667 Sum_probs=75.2
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeCCC
Q psy14193 138 SHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHT 215 (239)
Q Consensus 138 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~~~ 215 (239)
..+|||+|||.++++++|.++|..||.+..+.+..++.++.++|||||+|.+++++..|+..++|..+.++.+.+...
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~ 192 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKA 192 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecc
Confidence 489999999999999999999999999999999999889999999999999999999999999999999999999875
No 67
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.35 E-value=4.7e-12 Score=101.41 Aligned_cols=73 Identities=22% Similarity=0.252 Sum_probs=65.0
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeCC
Q psy14193 138 SHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQH 214 (239)
Q Consensus 138 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~~ 214 (239)
..+|||+||++.+|+++|+++|+.||+|.+|+++++. ..+|+|||+|++++++ ..+..|+|..+.++.|.+..
T Consensus 5 g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aa-etAllLnGa~l~d~~I~It~ 77 (243)
T PLN03121 5 GYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYAL-ETAVLLSGATIVDQRVCITR 77 (243)
T ss_pred ceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHH-HHHHhcCCCeeCCceEEEEe
Confidence 5799999999999999999999999999999999883 4568999999999955 56668999999999998764
No 68
>KOG0111|consensus
Probab=99.35 E-value=6e-13 Score=103.92 Aligned_cols=79 Identities=23% Similarity=0.378 Sum_probs=75.6
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeCCCC
Q psy14193 138 SHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTN 216 (239)
Q Consensus 138 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~~~~ 216 (239)
.++|||++|..++++.-|...|-+||.|.++.++.|..+++.+|||||+|...|||+.|+-.||+..+-||.|+|..+.
T Consensus 10 KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~Ak 88 (298)
T KOG0111|consen 10 KRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAK 88 (298)
T ss_pred ceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecC
Confidence 5799999999999999999999999999999999999999999999999999999999999999999999999997653
No 69
>KOG0108|consensus
Probab=99.33 E-value=2.8e-12 Score=112.14 Aligned_cols=78 Identities=36% Similarity=0.561 Sum_probs=75.5
Q ss_pred cEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeCCCC
Q psy14193 139 HSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTN 216 (239)
Q Consensus 139 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~~~~ 216 (239)
+.+||||+|+++++++|.++|+..|.|.+++++.|+.||+++||||++|.+.+++.+|+..+||..+.||.|++.+..
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~ 96 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYAS 96 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccc
Confidence 799999999999999999999999999999999999999999999999999999999999999999999999997653
No 70
>KOG0149|consensus
Probab=99.33 E-value=1.5e-12 Score=102.82 Aligned_cols=78 Identities=17% Similarity=0.293 Sum_probs=67.8
Q ss_pred eeEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEEEe
Q psy14193 24 LKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRF 103 (239)
Q Consensus 24 ~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV~f 103 (239)
.|||||.+.+....+ .|+++|++||+|++.. |+-|+.|++|+|||||+|
T Consensus 13 TKifVggL~w~T~~~--------------~l~~yFeqfGeI~eav-----------------vitd~~t~rskGyGfVTf 61 (247)
T KOG0149|consen 13 TKIFVGGLAWETHKE--------------TLRRYFEQFGEIVEAV-----------------VITDKNTGRSKGYGFVTF 61 (247)
T ss_pred EEEEEcCcccccchH--------------HHHHHHHHhCceEEEE-----------------EEeccCCccccceeeEEe
Confidence 589999998886666 9999999999999865 678999999999999999
Q ss_pred CCHHHHHHHHHhCCCccCCeeEEEeccCC
Q psy14193 104 KNLESVEKALEMNGHVIDEHTIRVDKALT 132 (239)
Q Consensus 104 ~~~e~a~~Ai~~~~~~l~g~~i~v~~~~~ 132 (239)
.+.++|.+|++=..-.|+||+-.|..+.-
T Consensus 62 ~d~~aa~rAc~dp~piIdGR~aNcnlA~l 90 (247)
T KOG0149|consen 62 RDAEAATRACKDPNPIIDGRKANCNLASL 90 (247)
T ss_pred ecHHHHHHHhcCCCCcccccccccchhhh
Confidence 99999999999434568999888877653
No 71
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.32 E-value=1.9e-11 Score=80.68 Aligned_cols=73 Identities=34% Similarity=0.647 Sum_probs=67.1
Q ss_pred EEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeC
Q psy14193 140 SIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQ 213 (239)
Q Consensus 140 ~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~ 213 (239)
+|+|+|||..+++++|+++|+.+|+|..+.+..++.+ .++|+|||+|.+.++|..|+..++|..+.++.+.+.
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~ 73 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVE 73 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEe
Confidence 4899999999999999999999999999999988544 678999999999999999999999999999988774
No 72
>KOG0130|consensus
Probab=99.31 E-value=4.1e-12 Score=92.04 Aligned_cols=78 Identities=24% Similarity=0.311 Sum_probs=74.5
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeCC
Q psy14193 137 NSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQH 214 (239)
Q Consensus 137 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~~ 214 (239)
....|||+++.+.+|+++|.+.|..||+|..+.+-.|+.||..+||+.|+|++.++|+.|+..+||..+-+..+.|.|
T Consensus 71 EGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw 148 (170)
T KOG0130|consen 71 EGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDW 148 (170)
T ss_pred eeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEE
Confidence 478999999999999999999999999999999999999999999999999999999999999999999999998863
No 73
>smart00361 RRM_1 RNA recognition motif.
Probab=99.30 E-value=1.7e-11 Score=81.29 Aligned_cols=61 Identities=21% Similarity=0.427 Sum_probs=55.0
Q ss_pred HHHHHHHhh----cCCCeeEEE-EeecCCC--CCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEee
Q psy14193 152 EEELRKAFE----SCGEIDNVR-LIRDQHT--NIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRD 212 (239)
Q Consensus 152 ~~~l~~~F~----~~G~i~~v~-i~~~~~t--g~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~ 212 (239)
+++|+++|+ .||.|.++. +..++.+ +.++|||||.|.+.++|.+|+..+||..+.|+.|++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 578888888 999999995 6666656 889999999999999999999999999999999986
No 74
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.28 E-value=1e-11 Score=81.88 Aligned_cols=57 Identities=32% Similarity=0.631 Sum_probs=49.9
Q ss_pred HHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEEEeCCHHHHHHHHH-hCCCccCCeeEE
Q psy14193 52 SSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALE-MNGHVIDEHTIR 126 (239)
Q Consensus 52 ~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV~f~~~e~a~~Ai~-~~~~~l~g~~i~ 126 (239)
++|+++|++||+|..+.+ +.+ .++.++|+|||+|.+.++|++|++ +++..+.|++|+
T Consensus 13 ~~l~~~f~~~g~i~~~~~-----------------~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 13 EELRDFFSQFGKIESIKV-----------------MRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp HHHHHHHHTTSTEEEEEE-----------------EEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred HHHHHHHHHhhhcccccc-----------------ccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 499999999999999884 222 456678999999999999999999 999999999885
No 75
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.27 E-value=1.9e-11 Score=77.39 Aligned_cols=55 Identities=27% Similarity=0.534 Sum_probs=47.0
Q ss_pred HHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEEEeCCHHHHHHHHH-hCCCccCCeeEEEecc
Q psy14193 54 VTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALE-MNGHVIDEHTIRVDKA 130 (239)
Q Consensus 54 l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV~f~~~e~a~~Ai~-~~~~~l~g~~i~v~~~ 130 (239)
|+++|++||+|.++.+. .. .+|+|||+|.+.++|+.|++ +|+..+.|++|.|.++
T Consensus 1 L~~~f~~fG~V~~i~~~--~~--------------------~~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIF--KK--------------------KRGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEE--TT--------------------STTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEE--eC--------------------CCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 67899999999999851 11 14899999999999999999 9999999999999875
No 76
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.27 E-value=4.6e-11 Score=98.69 Aligned_cols=138 Identities=28% Similarity=0.481 Sum_probs=105.3
Q ss_pred ceeEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEEE
Q psy14193 23 KLKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVR 102 (239)
Q Consensus 23 ~~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV~ 102 (239)
...|||+.+...... ++|.++|.+||+|..+. +..+..++.++|||||+
T Consensus 115 ~~~l~v~nL~~~~~~--------------~~l~~~F~~~g~~~~~~-----------------~~~d~~~~~~~g~~~v~ 163 (306)
T COG0724 115 NNTLFVGNLPYDVTE--------------EDLRELFKKFGPVKRVR-----------------LVRDRETGKSRGFAFVE 163 (306)
T ss_pred CceEEEeCCCCCCCH--------------HHHHHHHHhcCceeEEE-----------------eeeccccCccCceEEEE
Confidence 467777766644333 59999999999998887 34566788999999999
Q ss_pred eCCHHHHHHHHH-hCCCccCCeeEEEeccC----CCCCC---------------------CCcEEEEcCCCCCCcHHHHH
Q psy14193 103 FKNLESVEKALE-MNGHVIDEHTIRVDKAL----TTTKS---------------------NSHSIFIGNIPFEAEEEELR 156 (239)
Q Consensus 103 f~~~e~a~~Ai~-~~~~~l~g~~i~v~~~~----~~~~~---------------------~~~~l~V~nLp~~~t~~~l~ 156 (239)
|.+.++|..|++ +++..+.|++|.|.+.. +.... ....+++.+++..++..++.
T Consensus 164 f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (306)
T COG0724 164 FESEESAEKAIEELNGKELEGRPLRVQKAQPASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELA 243 (306)
T ss_pred ecCHHHHHHHHHHcCCCeECCceeEeeccccccccccccccccchhhhccccccccccccccceeeccccccccchhHHH
Confidence 999999999999 99999999999999953 11111 16789999999999999999
Q ss_pred HHhhcCCCeeEEEEeecCCCCCCceEEEEEecChH
Q psy14193 157 KAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEE 191 (239)
Q Consensus 157 ~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e 191 (239)
..|..+|.+....+.............++.+....
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (306)
T COG0724 244 DLFKSRGDIVRASLPPSKDGKIPKSRSFVGNEASK 278 (306)
T ss_pred HhccccccceeeeccCCCCCcccccccccchhHHH
Confidence 99999999977766655433333334443333333
No 77
>smart00361 RRM_1 RNA recognition motif.
Probab=99.27 E-value=1.9e-11 Score=81.08 Aligned_cols=60 Identities=22% Similarity=0.374 Sum_probs=50.3
Q ss_pred HHHHHhcc----cCCceeEEEEeecccccCCCccceeeecccccC--CCCcceEEEEeCCHHHHHHHHH-hCCCccCCee
Q psy14193 52 SSVTSMFK----PYGEVETVRFRSVPVADITLPRKACIKMNKVHE--KRTNMNAYVRFKNLESVEKALE-MNGHVIDEHT 124 (239)
Q Consensus 52 ~~l~~~F~----~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t--~~~~G~afV~f~~~e~a~~Ai~-~~~~~l~g~~ 124 (239)
++|+++|+ +||.|.+|.- +..++.+ +.++|||||+|.+.++|.+|+. |||..+.|+.
T Consensus 3 ~~l~~~~~~~~~~fG~v~~v~~----------------v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~ 66 (70)
T smart00361 3 EDFEREFSEEEEYFGEVGKINK----------------IYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRT 66 (70)
T ss_pred hhHHHHHHHHHHhcCCeeEEEE----------------EEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 47888888 9999999851 2233334 7789999999999999999999 9999999999
Q ss_pred EEE
Q psy14193 125 IRV 127 (239)
Q Consensus 125 i~v 127 (239)
|.+
T Consensus 67 l~~ 69 (70)
T smart00361 67 VKA 69 (70)
T ss_pred EEe
Confidence 976
No 78
>KOG0114|consensus
Probab=99.25 E-value=3.2e-11 Score=83.54 Aligned_cols=72 Identities=19% Similarity=0.335 Sum_probs=66.4
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEee
Q psy14193 138 SHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRD 212 (239)
Q Consensus 138 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~ 212 (239)
.+.|||.|||+++|.++..++|++||+|..+++-..+ .-+|-|||.|++..+|.+|+..++|..+.++.|.|
T Consensus 18 nriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k---~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~v 89 (124)
T KOG0114|consen 18 NRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTK---ETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVV 89 (124)
T ss_pred heeEEEecCCccccHHHHHHHhhcccceEEEEecCcc---CcCceEEEEehHhhhHHHHHHHhcccccCCceEEE
Confidence 6789999999999999999999999999999987554 45789999999999999999999999999998887
No 79
>KOG4205|consensus
Probab=99.24 E-value=1.4e-11 Score=103.46 Aligned_cols=101 Identities=32% Similarity=0.595 Sum_probs=84.3
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHH-------------------
Q psy14193 137 NSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKA------------------- 197 (239)
Q Consensus 137 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~------------------- 197 (239)
..+++||++|+++++++.|++.|.+||+|.+|.+++|+.++.++||+||+|.+++....++
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h~~dgr~ve~k~av~ 84 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNARTHKLDGRSVEPKRAVS 84 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecccccccCCccccceeccC
Confidence 4679999999999999999999999999999999999999999999999999776333222
Q ss_pred ---------------------------------HHhCCcEeeEEEEeeCCCCCCcceEEEEeCChHHHHhhhh
Q psy14193 198 ---------------------------------FESCGEIDNVRLIRDQHTNIGKGFGYVNFKVSFTTLSSIF 237 (239)
Q Consensus 198 ---------------------------------~~~~g~~~~~r~l~~~~~~~~~G~~fv~f~~~~~a~~a~~ 237 (239)
.+-.|.+...-...+..+.+++|||||.|++.++.-+++.
T Consensus 85 r~~~~~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~ 157 (311)
T KOG4205|consen 85 REDQTKVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL 157 (311)
T ss_pred cccccccccccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc
Confidence 2344556666666777888899999999999998776654
No 80
>KOG1190|consensus
Probab=99.22 E-value=1.2e-10 Score=98.67 Aligned_cols=138 Identities=19% Similarity=0.304 Sum_probs=110.8
Q ss_pred HHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEEEeCCHHHHHHHHH-hCCCccCCeeEEEecc
Q psy14193 52 SSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALE-MNGHVIDEHTIRVDKA 130 (239)
Q Consensus 52 ~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV~f~~~e~a~~Ai~-~~~~~l~g~~i~v~~~ 130 (239)
+.|..+|+-||.|..|++ +... +-.|.|+|.+...|+-|++ ++|+.+.|++|+|.++
T Consensus 313 d~LftlFgvYGdVqRVki--l~nk--------------------kd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~S 370 (492)
T KOG1190|consen 313 DVLFTLFGVYGDVQRVKI--LYNK--------------------KDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLS 370 (492)
T ss_pred hHHHHHHhhhcceEEEEe--eecC--------------------CcceeeeecchhHHHHHHHHhhcceecCceEEEeec
Confidence 789999999999999996 2221 1269999999999999999 9999999999999776
Q ss_pred CCCCC------------------------------------CCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecC
Q psy14193 131 LTTTK------------------------------------SNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQ 174 (239)
Q Consensus 131 ~~~~~------------------------------------~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~ 174 (239)
+...- .++.++++.|+|.+++++++++.|..-|........
T Consensus 371 KH~~vqlp~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkf--- 447 (492)
T KOG1190|consen 371 KHTNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKF--- 447 (492)
T ss_pred cCccccCCCCCCccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHhhhcCCceEEeeee---
Confidence 52211 026789999999999999999999988865444221
Q ss_pred CCCCCceEEEEEecChHHHHHHHHHhCCcEeeEE-EEeeCCC
Q psy14193 175 HTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVR-LIRDQHT 215 (239)
Q Consensus 175 ~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r-~l~~~~~ 215 (239)
-++.+-++++.+.+.|+|..|+..++...++.. .+||..+
T Consensus 448 -f~kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSFS 488 (492)
T KOG1190|consen 448 -FQKDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSFS 488 (492)
T ss_pred -cCCCcceeecccCChhHhhhhccccccccCCCCceEEEEee
Confidence 122455999999999999999999988888765 7777544
No 81
>KOG0111|consensus
Probab=99.22 E-value=3.5e-11 Score=94.17 Aligned_cols=90 Identities=18% Similarity=0.286 Sum_probs=77.3
Q ss_pred ccccccceeEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCc
Q psy14193 17 NRNLMSKLKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTN 96 (239)
Q Consensus 17 n~~~~~~~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~ 96 (239)
|.+-..-+.+|||-+....... -|...|-+||.|.+|++ -.|..+.+++
T Consensus 4 ~~~a~~KrtlYVGGladeVtek--------------vLhaAFIPFGDI~dIqi-----------------PlDyesqkHR 52 (298)
T KOG0111|consen 4 QQMANQKRTLYVGGLADEVTEK--------------VLHAAFIPFGDIKDIQI-----------------PLDYESQKHR 52 (298)
T ss_pred ccccccceeEEeccchHHHHHH--------------HHHhccccccchhhccc-----------------ccchhccccc
Confidence 3445566789999988776665 89999999999999983 3467788999
Q ss_pred ceEEEEeCCHHHHHHHHH-hCCCccCCeeEEEeccCCCCCCC
Q psy14193 97 MNAYVRFKNLESVEKALE-MNGHVIDEHTIRVDKALTTTKSN 137 (239)
Q Consensus 97 G~afV~f~~~e~a~~Ai~-~~~~~l~g~~i~v~~~~~~~~~~ 137 (239)
|||||+|...|+|..||. ||+.+|.|+.|+|..+.|...+.
T Consensus 53 gFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~AkP~kike 94 (298)
T KOG0111|consen 53 GFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAKPEKIKE 94 (298)
T ss_pred ceeEEEeeccchhHHHhhcCchhhhcceeEEEeecCCccccC
Confidence 999999999999999999 99999999999999999876543
No 82
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.22 E-value=4.1e-11 Score=97.50 Aligned_cols=80 Identities=20% Similarity=0.279 Sum_probs=66.7
Q ss_pred cceeEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEE
Q psy14193 22 SKLKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYV 101 (239)
Q Consensus 22 ~~~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV 101 (239)
..++|||+++......+ +|+++|+.||+|.+|+| +. +. .++|||||
T Consensus 3 ~~rtVfVgNLs~~tTE~--------------dLrefFS~~G~I~~V~I---~~--------------d~---~~~GfAFV 48 (260)
T PLN03120 3 QVRTVKVSNVSLKATER--------------DIKEFFSFSGDIEYVEM---QS--------------EN---ERSQIAYV 48 (260)
T ss_pred CCCEEEEeCCCCCCCHH--------------HHHHHHHhcCCeEEEEE---ee--------------cC---CCCCEEEE
Confidence 46789999887765554 99999999999999995 22 21 24689999
Q ss_pred EeCCHHHHHHHHHhCCCccCCeeEEEeccCCCCC
Q psy14193 102 RFKNLESVEKALEMNGHVIDEHTIRVDKALTTTK 135 (239)
Q Consensus 102 ~f~~~e~a~~Ai~~~~~~l~g~~i~v~~~~~~~~ 135 (239)
+|.++++|+.|+.++|..|.|+.|.|.++.....
T Consensus 49 tF~d~eaAe~AllLnG~~l~gr~V~Vt~a~~~~~ 82 (260)
T PLN03120 49 TFKDPQGAETALLLSGATIVDQSVTITPAEDYQL 82 (260)
T ss_pred EeCcHHHHHHHHHhcCCeeCCceEEEEeccCCCC
Confidence 9999999999999999999999999999875443
No 83
>KOG4207|consensus
Probab=99.20 E-value=1.4e-11 Score=95.44 Aligned_cols=65 Identities=29% Similarity=0.462 Sum_probs=59.3
Q ss_pred HHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEEEeCCHHHHHHHHH-hCCCccCCeeEEEecc
Q psy14193 52 SSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALE-MNGHVIDEHTIRVDKA 130 (239)
Q Consensus 52 ~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV~f~~~e~a~~Ai~-~~~~~l~g~~i~v~~~ 130 (239)
++|+.+|++||.|-+|. |-+|.-|+.++|||||.|....+|+.|++ |+|..++|+.|.|+.+
T Consensus 28 d~LrrvFekYG~vgDVy-----------------IPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~a 90 (256)
T KOG4207|consen 28 DDLRRVFEKYGRVGDVY-----------------IPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMA 90 (256)
T ss_pred HHHHHHHHHhCccccee-----------------cccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhh
Confidence 59999999999999987 45678899999999999999999999999 9999999999999887
Q ss_pred CCC
Q psy14193 131 LTT 133 (239)
Q Consensus 131 ~~~ 133 (239)
.-.
T Consensus 91 ryg 93 (256)
T KOG4207|consen 91 RYG 93 (256)
T ss_pred hcC
Confidence 533
No 84
>KOG0120|consensus
Probab=99.20 E-value=5.9e-11 Score=104.67 Aligned_cols=144 Identities=17% Similarity=0.329 Sum_probs=110.6
Q ss_pred HHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEEEeCCHHHHHHHHH-hCCCccCCeeEEEecc
Q psy14193 52 SSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALE-MNGHVIDEHTIRVDKA 130 (239)
Q Consensus 52 ~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV~f~~~e~a~~Ai~-~~~~~l~g~~i~v~~~ 130 (239)
.++.++...||++....+ ..+..++-++||||.+|.++.....|++ +||..++++++.|..+
T Consensus 304 ~q~~Ell~~fg~lk~f~l-----------------v~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A 366 (500)
T KOG0120|consen 304 DQVKELLDSFGPLKAFRL-----------------VKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRA 366 (500)
T ss_pred HHHHHHHHhcccchhhee-----------------ecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehh
Confidence 478888888888887663 5566677888999999999999999999 9999999999999887
Q ss_pred CCCCCCC-------------------------CcEEEEcCCC--CCC-cH-------HHHHHHhhcCCCeeEEEEeecCC
Q psy14193 131 LTTTKSN-------------------------SHSIFIGNIP--FEA-EE-------EELRKAFESCGEIDNVRLIRDQH 175 (239)
Q Consensus 131 ~~~~~~~-------------------------~~~l~V~nLp--~~~-t~-------~~l~~~F~~~G~i~~v~i~~~~~ 175 (239)
....... ...+.+.|+= .++ .+ ++++.-+..||.|..|.++++..
T Consensus 367 ~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~~ 446 (500)
T KOG0120|consen 367 IVGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRPYP 446 (500)
T ss_pred hccchhccccCCccccccccchhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCCCC
Confidence 6443321 2223333321 111 11 56677788899999999988732
Q ss_pred C---CCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEee
Q psy14193 176 T---NIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRD 212 (239)
Q Consensus 176 t---g~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~ 212 (239)
. ....|-.||+|.+.+++++|..+|+|..+.+|.+.-
T Consensus 447 ~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvt 486 (500)
T KOG0120|consen 447 DENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVA 486 (500)
T ss_pred CCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEE
Confidence 2 234577899999999999999999999999998864
No 85
>KOG0121|consensus
Probab=99.20 E-value=2.6e-11 Score=87.10 Aligned_cols=63 Identities=19% Similarity=0.365 Sum_probs=57.0
Q ss_pred HHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEEEeCCHHHHHHHHH-hCCCccCCeeEEEecc
Q psy14193 52 SSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALE-MNGHVIDEHTIRVDKA 130 (239)
Q Consensus 52 ~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV~f~~~e~a~~Ai~-~~~~~l~g~~i~v~~~ 130 (239)
++|.++|+++|+|..|.+ -.|..+...+|||||+|.+.++|+.|+. +++..++.++|.+.|.
T Consensus 51 EqiyELFs~cG~irriiM-----------------GLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 51 EQIYELFSKCGDIRRIIM-----------------GLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred HHHHHHHHhccchheeEe-----------------ccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecc
Confidence 699999999999998753 3466788899999999999999999999 9999999999999886
Q ss_pred C
Q psy14193 131 L 131 (239)
Q Consensus 131 ~ 131 (239)
.
T Consensus 114 ~ 114 (153)
T KOG0121|consen 114 A 114 (153)
T ss_pred c
Confidence 5
No 86
>KOG4212|consensus
Probab=99.19 E-value=3.2e-10 Score=96.80 Aligned_cols=71 Identities=25% Similarity=0.335 Sum_probs=65.9
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeC
Q psy14193 138 SHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQ 213 (239)
Q Consensus 138 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~ 213 (239)
.++|+|.|||.++|++.|++-|..||.+.++.|+ ..|+++| .|.|.++++|.+|+..|+|..+++|.|.|.
T Consensus 536 a~qIiirNlP~dfTWqmlrDKfre~G~v~yadim---e~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~V~ 606 (608)
T KOG4212|consen 536 ACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIM---ENGKSKG--VVRFFSPEDAERACALMNGSRLDGRNIKVT 606 (608)
T ss_pred ccEEEEecCCccccHHHHHHHHHhccceehhhhh---ccCCccc--eEEecCHHHHHHHHHHhccCcccCceeeee
Confidence 6889999999999999999999999999999985 3577776 899999999999999999999999999985
No 87
>KOG0120|consensus
Probab=99.19 E-value=2.9e-11 Score=106.61 Aligned_cols=139 Identities=18% Similarity=0.383 Sum_probs=121.1
Q ss_pred CCCcceEEEEeCCHHHHHHHHHhCCCccCCeeEEEeccCCCCCC------------------------CCcEEEEcCCCC
Q psy14193 93 KRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKS------------------------NSHSIFIGNIPF 148 (239)
Q Consensus 93 ~~~~G~afV~f~~~e~a~~Ai~~~~~~l~g~~i~v~~~~~~~~~------------------------~~~~l~V~nLp~ 148 (239)
+..+.|+|++|.+.++|..|+.+++..+.|.++.+......... ....+||++||.
T Consensus 220 n~~~nfa~ie~~s~~~at~~~~~~~~~f~g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~ 299 (500)
T KOG0120|consen 220 NLEKNFAFIEFRSISEATEAMALDGIIFEGRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPL 299 (500)
T ss_pred cccccceeEEecCCCchhhhhcccchhhCCCCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcC
Confidence 34467999999999999999999988888888887554322221 278899999999
Q ss_pred CCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeCCCCCCcceEEEEeCC
Q psy14193 149 EAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKV 228 (239)
Q Consensus 149 ~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~~~~~~~G~~fv~f~~ 228 (239)
..+++++.++...||++....+..|..+|.++||||.+|.++.....|+..+||..++++.|.++.+-.+.-.+++++.+
T Consensus 300 ~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g~~~~~~~~~~ 379 (500)
T KOG0120|consen 300 YLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVGASNANVNFNI 379 (500)
T ss_pred ccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhccchhccccCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999888777788888875
Q ss_pred hHH
Q psy14193 229 SFT 231 (239)
Q Consensus 229 ~~~ 231 (239)
++.
T Consensus 380 ~~~ 382 (500)
T KOG0120|consen 380 SQS 382 (500)
T ss_pred ccc
Confidence 444
No 88
>KOG0125|consensus
Probab=99.18 E-value=3.2e-11 Score=99.46 Aligned_cols=66 Identities=21% Similarity=0.397 Sum_probs=57.5
Q ss_pred hHHHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEEEeCCHHHHHHHHH-hCCCccCCeeEEEe
Q psy14193 50 ALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALE-MNGHVIDEHTIRVD 128 (239)
Q Consensus 50 r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV~f~~~e~a~~Ai~-~~~~~l~g~~i~v~ 128 (239)
|..||+..|.+||+|.||.| +.. ...|||||||+|++.+||++|-+ +||..+.||+|.|.
T Consensus 109 RdpDL~aMF~kfG~VldVEI---IfN----------------ERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn 169 (376)
T KOG0125|consen 109 RDPDLRAMFEKFGKVLDVEI---IFN----------------ERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVN 169 (376)
T ss_pred cCccHHHHHHhhCceeeEEE---Eec----------------cCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEe
Confidence 33699999999999999994 332 34578999999999999999999 99999999999999
Q ss_pred ccCCCC
Q psy14193 129 KALTTT 134 (239)
Q Consensus 129 ~~~~~~ 134 (239)
.+..+.
T Consensus 170 ~ATarV 175 (376)
T KOG0125|consen 170 NATARV 175 (376)
T ss_pred ccchhh
Confidence 887553
No 89
>KOG4208|consensus
Probab=99.15 E-value=8.5e-11 Score=91.23 Aligned_cols=77 Identities=23% Similarity=0.346 Sum_probs=71.5
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcC-CCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeC
Q psy14193 137 NSHSIFIGNIPFEAEEEELRKAFESC-GEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQ 213 (239)
Q Consensus 137 ~~~~l~V~nLp~~~t~~~l~~~F~~~-G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~ 213 (239)
....+|+..+|..+.+.++..+|.++ |.+...++-++..||.++|||||+|++++.|.-|+..||++.+.++.|.+.
T Consensus 48 ~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~ 125 (214)
T KOG4208|consen 48 IEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECH 125 (214)
T ss_pred CccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeE
Confidence 36789999999999999999999998 788888998999999999999999999999999999999999999999774
No 90
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.14 E-value=1.6e-10 Score=92.68 Aligned_cols=79 Identities=19% Similarity=0.240 Sum_probs=66.3
Q ss_pred ccceeEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEE
Q psy14193 21 MSKLKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAY 100 (239)
Q Consensus 21 ~~~~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~af 100 (239)
..|..|+|+++......+ +|+++|+.||+|.+|+| .+| +++.|+||
T Consensus 3 ~~g~TV~V~NLS~~tTE~--------------dLrefFS~~G~I~~V~I-----------------~~D---~et~gfAf 48 (243)
T PLN03121 3 PGGYTAEVTNLSPKATEK--------------DVYDFFSHCGAIEHVEI-----------------IRS---GEYACTAY 48 (243)
T ss_pred CCceEEEEecCCCCCCHH--------------HHHHHHHhcCCeEEEEE-----------------ecC---CCcceEEE
Confidence 467889998887775555 99999999999999995 222 34558999
Q ss_pred EEeCCHHHHHHHHHhCCCccCCeeEEEeccCCC
Q psy14193 101 VRFKNLESVEKALEMNGHVIDEHTIRVDKALTT 133 (239)
Q Consensus 101 V~f~~~e~a~~Ai~~~~~~l~g~~i~v~~~~~~ 133 (239)
|+|.++++|+.|+.|+|..|.+++|.|.+....
T Consensus 49 VtF~d~~aaetAllLnGa~l~d~~I~It~~~~y 81 (243)
T PLN03121 49 VTFKDAYALETAVLLSGATIVDQRVCITRWGQY 81 (243)
T ss_pred EEECCHHHHHHHHhcCCCeeCCceEEEEeCccc
Confidence 999999999999999999999999999886543
No 91
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.13 E-value=2.5e-10 Score=75.44 Aligned_cols=57 Identities=32% Similarity=0.588 Sum_probs=49.0
Q ss_pred HHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEEEeCCHHHHHHHHH-hCCCccCCeeEE
Q psy14193 52 SSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALE-MNGHVIDEHTIR 126 (239)
Q Consensus 52 ~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV~f~~~e~a~~Ai~-~~~~~l~g~~i~ 126 (239)
++|.++|+.||.|..+++ ..+++ +.++|+|||+|.++++|.+|++ .++..++|+.|+
T Consensus 13 ~~l~~~f~~~g~v~~v~~-----------------~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 13 EDLRNFFSRFGPVEKVRL-----------------IKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp HHHHHHCTTSSBEEEEEE-----------------EESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred HHHHHHHHhcCCcceEEE-----------------Eeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 599999999999999885 22333 5677999999999999999999 888999999874
No 92
>KOG0105|consensus
Probab=99.13 E-value=1e-10 Score=89.32 Aligned_cols=76 Identities=22% Similarity=0.357 Sum_probs=68.3
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeCCC
Q psy14193 137 NSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHT 215 (239)
Q Consensus 137 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~~~ 215 (239)
..+.|||+|||.++.+.+|.++|.+||.|..|.+... ..+..||||+|+++.+|..|+..-+|..+++..|+|...
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r---~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfp 80 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNR---PGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFP 80 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccC---CCCCCeeEEEecCccchhhhhhcccccccCcceEEEEec
Confidence 3689999999999999999999999999999988543 234679999999999999999999999999999999754
No 93
>KOG0107|consensus
Probab=99.12 E-value=9.2e-11 Score=88.76 Aligned_cols=78 Identities=21% Similarity=0.328 Sum_probs=66.3
Q ss_pred cceeEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEE
Q psy14193 22 SKLKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYV 101 (239)
Q Consensus 22 ~~~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV 101 (239)
.+.+|||+++-...... ||+..|..||+|.+|++ ... ..|||||
T Consensus 9 ~~~kVYVGnL~~~a~k~--------------eLE~~F~~yG~lrsvWv---Arn-------------------PPGfAFV 52 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKR--------------ELERAFSKYGPLRSVWV---ARN-------------------PPGFAFV 52 (195)
T ss_pred CCceEEeccCCCCcchH--------------HHHHHHHhcCcceeEEE---eec-------------------CCCceEE
Confidence 37899999987775555 99999999999999984 222 2479999
Q ss_pred EeCCHHHHHHHHH-hCCCccCCeeEEEeccCCCCC
Q psy14193 102 RFKNLESVEKALE-MNGHVIDEHTIRVDKALTTTK 135 (239)
Q Consensus 102 ~f~~~e~a~~Ai~-~~~~~l~g~~i~v~~~~~~~~ 135 (239)
+|+++.+|+.|+. |+|..|.|..|.|..+.-...
T Consensus 53 EFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~~r 87 (195)
T KOG0107|consen 53 EFEDPRDAEDAVRYLDGKDICGSRIRVELSTGRPR 87 (195)
T ss_pred eccCcccHHHHHhhcCCccccCceEEEEeecCCcc
Confidence 9999999999999 999999999999988765543
No 94
>KOG0226|consensus
Probab=99.10 E-value=1.5e-10 Score=92.44 Aligned_cols=123 Identities=23% Similarity=0.398 Sum_probs=103.1
Q ss_pred CCCcceEEEEeCCHHHHHHHHH-hCCCccCCeeEEEeccCCCCC-------CCCcEEEEcCCCCCCcHHHHHHHhhcCCC
Q psy14193 93 KRTNMNAYVRFKNLESVEKALE-MNGHVIDEHTIRVDKALTTTK-------SNSHSIFIGNIPFEAEEEELRKAFESCGE 164 (239)
Q Consensus 93 ~~~~G~afV~f~~~e~a~~Ai~-~~~~~l~g~~i~v~~~~~~~~-------~~~~~l~V~nLp~~~t~~~l~~~F~~~G~ 164 (239)
+.-.+++|+.|.....-.++-. -+++.++-.+++......-.+ .....||.+.|..+++++-|...|.+|-.
T Consensus 137 ~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~gtswedPsl~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfps 216 (290)
T KOG0226|consen 137 QPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAAGTSWEDPSLAEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPS 216 (290)
T ss_pred CccCcccccCcchhhhhhhhccccccccccCcceeeccccccCCcccccCccccceeecccccccccHHHHHHHHHhccc
Confidence 4456899999998877777766 777777766666543322221 23789999999999999999999999999
Q ss_pred eeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeCCC
Q psy14193 165 IDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHT 215 (239)
Q Consensus 165 i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~~~ 215 (239)
....++++|+.||+++||+||.|.+.+++.+|..+|+|+.++.|.++.+.+
T Consensus 217 f~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRkS 267 (290)
T KOG0226|consen 217 FQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRKS 267 (290)
T ss_pred hhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhhh
Confidence 899999999999999999999999999999999999999999999987643
No 95
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.10 E-value=2.2e-10 Score=72.41 Aligned_cols=55 Identities=24% Similarity=0.460 Sum_probs=48.9
Q ss_pred HHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeCC
Q psy14193 155 LRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQH 214 (239)
Q Consensus 155 l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~~ 214 (239)
|.++|++||+|..+.+..+. +++|||+|.+.++|..|+..+||..+.|+.|++.+
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~ 55 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSY 55 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 67899999999999887652 58999999999999999999999999999999864
No 96
>KOG0113|consensus
Probab=99.05 E-value=3.4e-10 Score=92.30 Aligned_cols=80 Identities=18% Similarity=0.303 Sum_probs=68.2
Q ss_pred eeEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEEEe
Q psy14193 24 LKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRF 103 (239)
Q Consensus 24 ~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV~f 103 (239)
+.+||+.+....... .|+..|+.||+|..|+ +++|+.|++++|||||+|
T Consensus 102 ~TLFv~RLnydT~Es--------------kLrreF~~YG~Ikrir-----------------lV~d~vTgkskGYAFIey 150 (335)
T KOG0113|consen 102 KTLFVARLNYDTSES--------------KLRREFEKYGPIKRIR-----------------LVRDKVTGKSKGYAFIEY 150 (335)
T ss_pred ceeeeeeccccccHH--------------HHHHHHHhcCcceeEE-----------------EeeecccCCccceEEEEe
Confidence 466666665554444 9999999999999998 467888999999999999
Q ss_pred CCHHHHHHHHH-hCCCccCCeeEEEeccCCCC
Q psy14193 104 KNLESVEKALE-MNGHVIDEHTIRVDKALTTT 134 (239)
Q Consensus 104 ~~~e~a~~Ai~-~~~~~l~g~~i~v~~~~~~~ 134 (239)
..+-+...|.+ .+|..|+|+.|.|..-....
T Consensus 151 e~erdm~~AYK~adG~~Idgrri~VDvERgRT 182 (335)
T KOG0113|consen 151 EHERDMKAAYKDADGIKIDGRRILVDVERGRT 182 (335)
T ss_pred ccHHHHHHHHHhccCceecCcEEEEEeccccc
Confidence 99999999999 99999999999998765443
No 97
>smart00360 RRM RNA recognition motif.
Probab=99.05 E-value=7.2e-10 Score=72.24 Aligned_cols=61 Identities=30% Similarity=0.577 Sum_probs=52.3
Q ss_pred HHHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEEEeCCHHHHHHHHH-hCCCccCCeeEEEe
Q psy14193 51 LSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALE-MNGHVIDEHTIRVD 128 (239)
Q Consensus 51 ~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV~f~~~e~a~~Ai~-~~~~~l~g~~i~v~ 128 (239)
.++|+++|++||+|..+.+ ..+..++.++|+|||+|.+.++|..|++ +++..+.|+.+.|.
T Consensus 10 ~~~l~~~f~~~g~v~~~~i-----------------~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 10 EEELRELFSKFGKIESVRL-----------------VRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred HHHHHHHHHhhCCEeEEEE-----------------EeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 3699999999999999884 2334467788999999999999999999 99999999988763
No 98
>KOG0126|consensus
Probab=99.05 E-value=3.2e-11 Score=91.75 Aligned_cols=65 Identities=23% Similarity=0.388 Sum_probs=59.7
Q ss_pred HHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEEEeCCHHHHHHHHH-hCCCccCCeeEEEecc
Q psy14193 52 SSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALE-MNGHVIDEHTIRVDKA 130 (239)
Q Consensus 52 ~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV~f~~~e~a~~Ai~-~~~~~l~g~~i~v~~~ 130 (239)
-||.-+|++||+|.+|. +++|..||+|+||||..|++..+.--|+. +||..|.|+.|+|...
T Consensus 50 gDil~VFSqyGe~vdin-----------------LiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 50 GDILCVFSQYGEIVDIN-----------------LIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred CcEEEEeeccCceEEEE-----------------EEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 38999999999999987 58899999999999999999999999999 9999999999999876
Q ss_pred CCC
Q psy14193 131 LTT 133 (239)
Q Consensus 131 ~~~ 133 (239)
...
T Consensus 113 ~~Y 115 (219)
T KOG0126|consen 113 SNY 115 (219)
T ss_pred ccc
Confidence 533
No 99
>KOG0415|consensus
Probab=99.03 E-value=4.5e-10 Score=93.61 Aligned_cols=80 Identities=19% Similarity=0.321 Sum_probs=76.2
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeCCCC
Q psy14193 137 NSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTN 216 (239)
Q Consensus 137 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~~~~ 216 (239)
+.+.|||..|.+-+|+++|.-+|+.||.|.+|.+++|..||.+-.||||+|.+.++..+|.++|.+..+..+.|.|..+.
T Consensus 238 PeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFSQ 317 (479)
T KOG0415|consen 238 PENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFSQ 317 (479)
T ss_pred CcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeehhh
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999997653
No 100
>KOG0130|consensus
Probab=99.03 E-value=3.6e-10 Score=82.03 Aligned_cols=67 Identities=18% Similarity=0.350 Sum_probs=61.2
Q ss_pred HHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEEEeCCHHHHHHHHH-hCCCccCCeeEEEecc
Q psy14193 52 SSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALE-MNGHVIDEHTIRVDKA 130 (239)
Q Consensus 52 ~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV~f~~~e~a~~Ai~-~~~~~l~g~~i~v~~~ 130 (239)
++|.+.|..||+|..+.| ..|..||-.+|||.|+|.+.++|+.|+. +|+..|.|+.|.|.|+
T Consensus 87 edi~d~F~dyGeiKNihL-----------------NLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~ 149 (170)
T KOG0130|consen 87 EDIHDKFADYGEIKNIHL-----------------NLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWC 149 (170)
T ss_pred HHHHHHHhhcccccceee-----------------ccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEE
Confidence 799999999999999884 6678899999999999999999999999 9999999999999998
Q ss_pred CCCCC
Q psy14193 131 LTTTK 135 (239)
Q Consensus 131 ~~~~~ 135 (239)
..+.+
T Consensus 150 Fv~gp 154 (170)
T KOG0130|consen 150 FVKGP 154 (170)
T ss_pred EecCC
Confidence 65543
No 101
>KOG1190|consensus
Probab=98.98 E-value=7e-09 Score=88.06 Aligned_cols=136 Identities=15% Similarity=0.205 Sum_probs=107.6
Q ss_pred HHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcce-EEEEeCCHHHHHHHHH-hCCCccCCeeE--EE
Q psy14193 52 SSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMN-AYVRFKNLESVEKALE-MNGHVIDEHTI--RV 127 (239)
Q Consensus 52 ~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~-afV~f~~~e~a~~Ai~-~~~~~l~g~~i--~v 127 (239)
+-|..+|++||.|..|.- -.++.|| |.|+|.+.+.|..|-. ++|..|....+ ++
T Consensus 165 DVLHqvFS~fG~VlKIiT----------------------F~Knn~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrI 222 (492)
T KOG1190|consen 165 DVLHQVFSKFGFVLKIIT----------------------FTKNNGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRI 222 (492)
T ss_pred HHHHHHHhhcceeEEEEE----------------------EecccchhhhhhccchhhHHHHHHhccCCcccCceeEEEe
Confidence 899999999999998752 1233466 9999999999999998 99999865433 33
Q ss_pred eccC----------CCCCC----------------------------------------------------C--CcEEEE
Q psy14193 128 DKAL----------TTTKS----------------------------------------------------N--SHSIFI 143 (239)
Q Consensus 128 ~~~~----------~~~~~----------------------------------------------------~--~~~l~V 143 (239)
.++. .+... + ...|-|
T Consensus 223 d~Sklt~LnvKynndkSRDyTnp~LP~gd~~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllv 302 (492)
T KOG1190|consen 223 DFSKLTDLNVKYNNDKSRDYTNPDLPVGDGQPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLV 302 (492)
T ss_pred ehhhcccceeeccccccccccCCCCCCCccccccchhhhccccccccccCCcccCCccchhhcccccccccCCCceEEEE
Confidence 2221 11000 0 267888
Q ss_pred cCCCCC-CcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeCC
Q psy14193 144 GNIPFE-AEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQH 214 (239)
Q Consensus 144 ~nLp~~-~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~~ 214 (239)
.||... +|.+.|..+|+-||+|.+|.|+.++. --|.|.|.+...|.-|...++|..+.|+.|++..
T Consensus 303 snln~~~VT~d~LftlFgvYGdVqRVkil~nkk-----d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~ 369 (492)
T KOG1190|consen 303 SNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKK-----DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTL 369 (492)
T ss_pred ecCchhccchhHHHHHHhhhcceEEEEeeecCC-----cceeeeecchhHHHHHHHHhhcceecCceEEEee
Confidence 888754 79999999999999999999998752 4699999999999999999999999999999853
No 102
>PLN03213 repressor of silencing 3; Provisional
Probab=98.96 E-value=1.2e-09 Score=94.65 Aligned_cols=122 Identities=20% Similarity=0.317 Sum_probs=86.7
Q ss_pred ccceeEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEE
Q psy14193 21 MSKLKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAY 100 (239)
Q Consensus 21 ~~~~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~af 100 (239)
..+..||||.+....... +|..+|+.||.|.+|.| + ..|| +||||
T Consensus 8 ~~gMRIYVGNLSydVTED--------------DLravFSeFGsVkdVEI---p----------------RETG--RGFAF 52 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRD--------------DLLKIFSPMGTVDAVEF---V----------------RTKG--RSFAY 52 (759)
T ss_pred CcceEEEEeCCCCCCCHH--------------HHHHHHHhcCCeeEEEE---e----------------cccC--CceEE
Confidence 356789999988776665 99999999999999995 1 2244 79999
Q ss_pred EEeCCH--HHHHHHHH-hCCCccCCeeEEEeccCCCCCC------------CCcEEEEcCCCCC-CcHHHHHHHhhcCCC
Q psy14193 101 VRFKNL--ESVEKALE-MNGHVIDEHTIRVDKALTTTKS------------NSHSIFIGNIPFE-AEEEELRKAFESCGE 164 (239)
Q Consensus 101 V~f~~~--e~a~~Ai~-~~~~~l~g~~i~v~~~~~~~~~------------~~~~l~V~nLp~~-~t~~~l~~~F~~~G~ 164 (239)
|+|.+. +++.+||. |||..+.|+.|+|..+++.-.. ...++ .+|.. ....+|+-+|.+.+.
T Consensus 53 VEMssdddaEeeKAISaLNGAEWKGR~LKVNKAKP~YLeRLkrEReea~s~~~~~~---kl~k~~~e~~qLnifFPrLrK 129 (759)
T PLN03213 53 IDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAKEHYLARLKREWEAASSTSDNTI---KAPSDSPPATHLNIFFPRLRK 129 (759)
T ss_pred EEecCCcHHHHHHHHHHhcCCeecCceeEEeeccHHHHHHHHHHHHHhhccccccc---cccccCCccceeeEecccccc
Confidence 999987 78999999 9999999999999988654221 01121 12222 234567777777777
Q ss_pred eeEEEEeecCCCCCCceEEE
Q psy14193 165 IDNVRLIRDQHTNIGKGFGY 184 (239)
Q Consensus 165 i~~v~i~~~~~tg~~kg~~f 184 (239)
+..+.+. .||+.+ |.|
T Consensus 130 vKslPfs---GTGKHk-YSF 145 (759)
T PLN03213 130 VKAMPLS---GTGKHK-YSF 145 (759)
T ss_pred ccccccC---CCccce-eee
Confidence 7655332 456544 443
No 103
>smart00362 RRM_2 RNA recognition motif.
Probab=98.92 E-value=4.2e-09 Score=68.82 Aligned_cols=58 Identities=28% Similarity=0.574 Sum_probs=49.4
Q ss_pred HHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEEEeCCHHHHHHHHH-hCCCccCCeeEEEe
Q psy14193 52 SSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALE-MNGHVIDEHTIRVD 128 (239)
Q Consensus 52 ~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV~f~~~e~a~~Ai~-~~~~~l~g~~i~v~ 128 (239)
++|+++|++||+|..+.+ ..+. +.++|+|||+|.+.++|+.|++ +++..+.|+.+.|.
T Consensus 14 ~~l~~~~~~~g~v~~~~~-----------------~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 14 EDLKELFSKFGPIESVKI-----------------PKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred HHHHHHHHhcCCEEEEEE-----------------ecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 599999999999999884 1122 4567899999999999999999 99999999998763
No 104
>KOG0129|consensus
Probab=98.89 E-value=4.4e-08 Score=85.63 Aligned_cols=157 Identities=19% Similarity=0.291 Sum_probs=107.3
Q ss_pred ccccccceeEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCc
Q psy14193 17 NRNLMSKLKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTN 96 (239)
Q Consensus 17 n~~~~~~~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~ 96 (239)
+++..--++|+||-......++ +|...|..||++. |.++. ......+ .-...+.
T Consensus 253 ~~~~~~S~KVFvGGlp~dise~--------------~i~~~F~~FGs~~-VdWP~---k~~~~~~--------~ppkGs~ 306 (520)
T KOG0129|consen 253 YRSPRYSRKVFVGGLPWDITEA--------------QINASFGQFGSVK-VDWPG---KANSRGR--------APPKGSY 306 (520)
T ss_pred CCccccccceeecCCCccccHH--------------HHHhhcccccceE-eecCC---Ccccccc--------CCCCCcc
Confidence 3444455778887776665554 8999999999974 45421 1111111 0011222
Q ss_pred ceEEEEeCCHHHHHHHHH--hCC-C--cc-------CCeeEEEeccC----------CCCCCCCcEEEEcCCCCCCcHHH
Q psy14193 97 MNAYVRFKNLESVEKALE--MNG-H--VI-------DEHTIRVDKAL----------TTTKSNSHSIFIGNIPFEAEEEE 154 (239)
Q Consensus 97 G~afV~f~~~e~a~~Ai~--~~~-~--~l-------~g~~i~v~~~~----------~~~~~~~~~l~V~nLp~~~t~~~ 154 (239)
||+|..|+++.++..-+. ..+ . .| ..+.+.|.+-. ...-.+.+|||||+||.-++.++
T Consensus 307 ~YvflvFe~E~sV~~Ll~aC~~~~~~~yf~vss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~e 386 (520)
T KOG0129|consen 307 GYVFLVFEDERSVQSLLSACSEGEGNYYFKVSSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEE 386 (520)
T ss_pred cEEEEEecchHHHHHHHHHHhhcccceEEEEecCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHH
Confidence 499999999999887766 211 0 11 12222222211 11112489999999999999999
Q ss_pred HHHHhh-cCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHH
Q psy14193 155 LRKAFE-SCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199 (239)
Q Consensus 155 l~~~F~-~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~ 199 (239)
|..+|+ -||.|.++.|-.|++-+.++|-|-|.|.+...-.+|+..
T Consensus 387 LA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 387 LAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred HHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 999999 699999999999988899999999999999977777753
No 105
>KOG1365|consensus
Probab=98.87 E-value=2.6e-08 Score=84.08 Aligned_cols=106 Identities=25% Similarity=0.291 Sum_probs=85.0
Q ss_pred CCCCcceEEEEeCCHHHHHHHHHhCCCccCCeeEEEeccCCCCC-----------------CCCcEEEEcCCCCCCcHHH
Q psy14193 92 EKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTK-----------------SNSHSIFIGNIPFEAEEEE 154 (239)
Q Consensus 92 t~~~~G~afV~f~~~e~a~~Ai~~~~~~l~g~~i~v~~~~~~~~-----------------~~~~~l~V~nLp~~~t~~~ 154 (239)
.++..|.|.|.|.++|.-+-|++.+.+.++++.|.|-.+....- ...-.|.+++||+++++.+
T Consensus 98 qgrRnge~lvrf~d~e~RdlalkRhkhh~g~ryievYka~ge~f~~iagg~s~e~~~flsk~~qvivRmRGLPfdat~~d 177 (508)
T KOG1365|consen 98 QGRRNGEALVRFVDPEGRDLALKRHKHHMGTRYIEVYKATGEEFLKIAGGTSNEAAPFLSKENQVIVRMRGLPFDATALD 177 (508)
T ss_pred hhccccceEEEecCchhhhhhhHhhhhhccCCceeeeccCchhheEecCCccccCCCCCCcccceEEEecCCCCCcchHH
Confidence 45667899999999999999999888999999999977653322 1145678899999999999
Q ss_pred HHHHhhcC----CCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHH
Q psy14193 155 LRKAFESC----GEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAF 198 (239)
Q Consensus 155 l~~~F~~~----G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~ 198 (239)
+.++|.+- |....+-++.. .+|+..|-|||.|..+++|..|+.
T Consensus 178 Vv~FF~~~cpv~~g~egvLFV~r-pdgrpTGdAFvlfa~ee~aq~aL~ 224 (508)
T KOG1365|consen 178 VVEFFGPPCPVTGGTEGVLFVTR-PDGRPTGDAFVLFACEEDAQFALR 224 (508)
T ss_pred HHHhcCCCCcccCCccceEEEEC-CCCCcccceEEEecCHHHHHHHHH
Confidence 99999742 24455555555 478999999999999999998883
No 106
>KOG4211|consensus
Probab=98.86 E-value=2.1e-08 Score=87.12 Aligned_cols=96 Identities=21% Similarity=0.372 Sum_probs=77.0
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHH------------------
Q psy14193 138 SHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE------------------ 199 (239)
Q Consensus 138 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~------------------ 199 (239)
...|-+.+||+++|+++|.++|+.+ .|..+.+.+. +|++.|-|||+|.++|+..+|++.
T Consensus 10 ~~~vr~rGLPwsat~~ei~~Ff~~~-~I~~~~~~r~--~Gr~sGeA~Ve~~seedv~~AlkkdR~~mg~RYIEVf~~~~~ 86 (510)
T KOG4211|consen 10 AFEVRLRGLPWSATEKEILDFFSNC-GIENLEIPRR--NGRPSGEAYVEFTSEEDVEKALKKDRESMGHRYIEVFTAGGA 86 (510)
T ss_pred ceEEEecCCCccccHHHHHHHHhcC-ceeEEEEecc--CCCcCcceEEEeechHHHHHHHHhhHHHhCCceEEEEccCCc
Confidence 5678889999999999999999999 5777666654 799999999999999999988851
Q ss_pred -------------------------------------hCCc--EeeEEEEeeCCCCCCcceEEEEeCChHHHHhhh
Q psy14193 200 -------------------------------------SCGE--IDNVRLIRDQHTNIGKGFGYVNFKVSFTTLSSI 236 (239)
Q Consensus 200 -------------------------------------~~g~--~~~~r~l~~~~~~~~~G~~fv~f~~~~~a~~a~ 236 (239)
+.|. +-.+-.+.+...+++.|-|||.|+++++|.+|+
T Consensus 87 e~d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al 162 (510)
T KOG4211|consen 87 EADWVMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIAL 162 (510)
T ss_pred cccccccCCCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHH
Confidence 0000 112334556667789999999999999999997
No 107
>KOG0108|consensus
Probab=98.84 E-value=5.1e-09 Score=91.88 Aligned_cols=81 Identities=20% Similarity=0.292 Sum_probs=71.1
Q ss_pred eeEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEEEe
Q psy14193 24 LKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRF 103 (239)
Q Consensus 24 ~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV~f 103 (239)
..||||........+ +|.++|+..|.|.+++ +..|..||+.+||||++|
T Consensus 19 ~~v~vgnip~~~se~--------------~l~~~~~~~g~v~s~~-----------------~v~D~~tG~~~G~~f~~~ 67 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEE--------------QLLSIFSGVGPVLSFR-----------------LVYDRETGKPKGFGFCEF 67 (435)
T ss_pred cceEecCCCCcccHH--------------HHHHHHhccCccceee-----------------ecccccCCCcCceeeEec
Confidence 788888776665544 9999999999999998 466888999999999999
Q ss_pred CCHHHHHHHHH-hCCCccCCeeEEEeccCCCCC
Q psy14193 104 KNLESVEKALE-MNGHVIDEHTIRVDKALTTTK 135 (239)
Q Consensus 104 ~~~e~a~~Ai~-~~~~~l~g~~i~v~~~~~~~~ 135 (239)
.+.++|+.|++ +||..+.|++|+|.++.....
T Consensus 68 ~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~~~ 100 (435)
T KOG0108|consen 68 TDEETAERAIRNLNGAEFNGRKLRVNYASNRKN 100 (435)
T ss_pred CchhhHHHHHHhcCCcccCCceEEeecccccch
Confidence 99999999999 999999999999999865544
No 108
>KOG1456|consensus
Probab=98.84 E-value=7.1e-08 Score=81.21 Aligned_cols=132 Identities=18% Similarity=0.215 Sum_probs=107.4
Q ss_pred HHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEEEeCCHHHHHHHHH-hCCCccCCeeEEEecc
Q psy14193 52 SSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALE-MNGHVIDEHTIRVDKA 130 (239)
Q Consensus 52 ~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV~f~~~e~a~~Ai~-~~~~~l~g~~i~v~~~ 130 (239)
+.|..+|..||.|+.|++ +.+ ..|-|.|+.-+....++|+. +|+..+.|.+|.|+.+
T Consensus 303 drlFNl~ClYGNV~rvkF--mkT--------------------k~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~S 360 (494)
T KOG1456|consen 303 DRLFNLFCLYGNVERVKF--MKT--------------------KPGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCVS 360 (494)
T ss_pred hhhhhhhhhcCceeeEEE--eec--------------------ccceeEEEcCcHHHHHHHHHHhccCccccceEEEeec
Confidence 789999999999999995 111 12679999999999999999 9999999999999876
Q ss_pred CCCCCC--------------------------------------CCcEEEEcCCCCCCcHHHHHHHhhcCC-CeeEEEEe
Q psy14193 131 LTTTKS--------------------------------------NSHSIFIGNIPFEAEEEELRKAFESCG-EIDNVRLI 171 (239)
Q Consensus 131 ~~~~~~--------------------------------------~~~~l~V~nLp~~~t~~~l~~~F~~~G-~i~~v~i~ 171 (239)
...--. +++.|+.-|.|..+||+.|..+|..-+ ..+++++.
T Consensus 361 kQ~~v~~~~pflLpDgSpSfKdys~SkNnRFssp~qAsKNrIq~Ps~vLHffNaP~~vtEe~l~~i~nek~v~~~svkvF 440 (494)
T KOG1456|consen 361 KQNFVSPVQPFLLPDGSPSFKDYSGSKNNRFSSPEQASKNRIQPPSNVLHFFNAPLGVTEEQLIGICNEKDVPPTSVKVF 440 (494)
T ss_pred cccccccCCceecCCCCcchhhcccccccccCChhHhhcccccCCcceeEEecCCCccCHHHHHHHhhhcCCCcceEEee
Confidence 533210 378999999999999999999998765 34567776
Q ss_pred ecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeE
Q psy14193 172 RDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNV 207 (239)
Q Consensus 172 ~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~ 207 (239)
..+ +. ...-|.++|++.++|..++..+|...+++
T Consensus 441 p~k-se-rSssGllEfe~~s~Aveal~~~NH~pi~~ 474 (494)
T KOG1456|consen 441 PLK-SE-RSSSGLLEFENKSDAVEALMKLNHYPIEG 474 (494)
T ss_pred ccc-cc-ccccceeeeehHHHHHHHHHHhccccccC
Confidence 553 22 23368999999999999999999987765
No 109
>KOG0128|consensus
Probab=98.81 E-value=2.2e-10 Score=104.84 Aligned_cols=168 Identities=22% Similarity=0.224 Sum_probs=130.7
Q ss_pred HHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcc-eEEEEeCCHHHHHHHHHhCCCccCCeeEEEecc
Q psy14193 52 SSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNM-NAYVRFKNLESVEKALEMNGHVIDEHTIRVDKA 130 (239)
Q Consensus 52 ~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G-~afV~f~~~e~a~~Ai~~~~~~l~g~~i~v~~~ 130 (239)
+..+..|..+|.|+.|+. +.. ......+ ++++++....+++.|....+..+.++...|..+
T Consensus 587 e~~~~~~k~~~~vekv~~---p~~---------------g~k~h~q~~~~~~~s~~~~~esat~pa~~~~a~~~~av~~a 648 (881)
T KOG0128|consen 587 EIQRRQFKGEGNVEKVNG---PKR---------------GFKAHEQPQQQKVQSKHGSAESATVPAGGALANRSAAVGLA 648 (881)
T ss_pred HhhHHHhhcccccccccC---ccc---------------cccccccchhhhhhccccchhhcccccccccCCccccCCCC
Confidence 367788999999999883 321 0111222 789999999999999998889999999999888
Q ss_pred CCCCCCC-----------CcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHH-
Q psy14193 131 LTTTKSN-----------SHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAF- 198 (239)
Q Consensus 131 ~~~~~~~-----------~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~- 198 (239)
.+..... ..++|+.||+..+.+++|...|.++|.+..+++......+..+|+||+.|..++++.+|+.
T Consensus 649 d~~~~~~~~kvs~n~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f 728 (881)
T KOG0128|consen 649 DAEEKEENFKVSPNEIRDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAF 728 (881)
T ss_pred CchhhhhccCcCchHHHHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhh
Confidence 7666532 5679999999999999999999999988877766555678899999999999998887774
Q ss_pred -----------HhCCcEeeE------------------EEEeeCCCCCCcceEEEEeCChHHHHhhhhc
Q psy14193 199 -----------ESCGEIDNV------------------RLIRDQHTNIGKGFGYVNFKVSFTTLSSIFS 238 (239)
Q Consensus 199 -----------~~~g~~~~~------------------r~l~~~~~~~~~G~~fv~f~~~~~a~~a~~~ 238 (239)
.+.|..+.| +.+++ ..|+++|-+||.|.+..+|.+++++
T Consensus 729 ~d~~~~gK~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~-r~gkpkg~a~v~y~~ea~~s~~~~s 796 (881)
T KOG0128|consen 729 RDSCFFGKISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTV-RAGKPKGKARVDYNTEADASRKVAS 796 (881)
T ss_pred hhhhhhhhhhhheeCCCCCCchHHHHhhccccCCccccchhhh-hccccccceeccCCCcchhhhhccc
Confidence 223333333 32222 4678999999999999999988765
No 110
>KOG0128|consensus
Probab=98.80 E-value=1.6e-09 Score=99.22 Aligned_cols=130 Identities=24% Similarity=0.306 Sum_probs=109.0
Q ss_pred HHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEEEeCCHHHHHHHHHhCCCccCCeeEEEeccC
Q psy14193 52 SSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKAL 131 (239)
Q Consensus 52 ~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV~f~~~e~a~~Ai~~~~~~l~g~~i~v~~~~ 131 (239)
++|...|..+|.+..+++ ..-.+.++.+|+||+.|..++++.+|+.++...+.|+
T Consensus 682 ~dl~~~~~~~~~~e~vqi-----------------~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~gK-------- 736 (881)
T KOG0128|consen 682 EDLSERFSPSGTIEVVQI-----------------VIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFGK-------- 736 (881)
T ss_pred chhhhhcCccchhhhHHH-----------------HHHhhccccccceeeEeecCCchhhhhhhhhhhhhhh--------
Confidence 899999999999988774 1234567788999999999999999999666666662
Q ss_pred CCCCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEe
Q psy14193 132 TTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIR 211 (239)
Q Consensus 132 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~ 211 (239)
..++|.|.|+..|.+.++.+++.+|.+++.+++.. ..|+++|.++|.|.++.++.++.....+..+.-+.+.
T Consensus 737 -------~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~-r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~ 808 (881)
T KOG0128|consen 737 -------ISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTV-RAGKPKGKARVDYNTEADASRKVASVDVAGKRENNGE 808 (881)
T ss_pred -------hhhheeCCCCCCchHHHHhhccccCCccccchhhh-hccccccceeccCCCcchhhhhcccchhhhhhhcCcc
Confidence 47999999999999999999999999999998777 5799999999999999999988877766666555555
Q ss_pred eCC
Q psy14193 212 DQH 214 (239)
Q Consensus 212 ~~~ 214 (239)
++.
T Consensus 809 v~v 811 (881)
T KOG0128|consen 809 VQV 811 (881)
T ss_pred ccc
Confidence 544
No 111
>KOG0132|consensus
Probab=98.78 E-value=1.8e-08 Score=91.64 Aligned_cols=94 Identities=19% Similarity=0.345 Sum_probs=81.1
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeCCC-C
Q psy14193 138 SHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHT-N 216 (239)
Q Consensus 138 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~~~-~ 216 (239)
++||||++|+..+++.+|.++|+.||+|.+|.+.. ++|+|||......+|.+|+.+|+...+..+.+++.|+ |
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~------~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g 494 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIP------PRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVG 494 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeecc------CCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeecc
Confidence 79999999999999999999999999999997754 4889999999999999999999999999999988875 2
Q ss_pred C------------CcceEEEEeCChHHHHhhhh
Q psy14193 217 I------------GKGFGYVNFKVSFTTLSSIF 237 (239)
Q Consensus 217 ~------------~~G~~fv~f~~~~~a~~a~~ 237 (239)
+ ..|+-||=++...+|+.|+-
T Consensus 495 ~G~kse~k~~wD~~lGVt~IP~~kLt~dl~~~~ 527 (894)
T KOG0132|consen 495 KGPKSEYKDYWDVELGVTYIPWEKLTDDLEAWC 527 (894)
T ss_pred CCcchhhhhhhhcccCeeEeehHhcCHHHHHhh
Confidence 1 24777777777777776653
No 112
>KOG4210|consensus
Probab=98.77 E-value=6.5e-09 Score=87.11 Aligned_cols=144 Identities=25% Similarity=0.293 Sum_probs=111.6
Q ss_pred HHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEEEeCCHHHHHHHHHhCCC-ccCCeeEEEecc
Q psy14193 52 SSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGH-VIDEHTIRVDKA 130 (239)
Q Consensus 52 ~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV~f~~~e~a~~Ai~~~~~-~l~g~~i~v~~~ 130 (239)
.+...++..+|.+.++.+ ........++|++++.|...+.+..|+.+.+. .+.+..+.....
T Consensus 103 ~~~~~~~~~~g~~~~~~~-----------------S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~ 165 (285)
T KOG4210|consen 103 SEDDNFSSEAGLRVDARS-----------------SSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLN 165 (285)
T ss_pred ccccccchhhcCcccchh-----------------hhhccccccccceeeccccHHHHHHHHHhhhccccccccccCccc
Confidence 346678888887766552 23345567789999999999999999996654 555544444333
Q ss_pred CCCCCC-----------CCcEEE-EcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHH
Q psy14193 131 LTTTKS-----------NSHSIF-IGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAF 198 (239)
Q Consensus 131 ~~~~~~-----------~~~~l~-V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~ 198 (239)
...... ...++| |++++..+++++|+.+|..+|.|..++++.++.++..+||+|++|.....+..++.
T Consensus 166 ~~~~~~~~n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~ 245 (285)
T KOG4210|consen 166 TRRGLRPKNKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALN 245 (285)
T ss_pred ccccccccchhcccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhh
Confidence 222211 145555 99999999999999999999999999999999999999999999999998888877
Q ss_pred HhCCcEeeEEEEeeC
Q psy14193 199 ESCGEIDNVRLIRDQ 213 (239)
Q Consensus 199 ~~~g~~~~~r~l~~~ 213 (239)
. ....+.++.+.+.
T Consensus 246 ~-~~~~~~~~~~~~~ 259 (285)
T KOG4210|consen 246 D-QTRSIGGRPLRLE 259 (285)
T ss_pred c-ccCcccCcccccc
Confidence 7 7888888877664
No 113
>KOG4454|consensus
Probab=98.77 E-value=2.5e-09 Score=83.77 Aligned_cols=133 Identities=21% Similarity=0.272 Sum_probs=101.4
Q ss_pred ceeEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEEE
Q psy14193 23 KLKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVR 102 (239)
Q Consensus 23 ~~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV~ 102 (239)
++.+||+++..+...+ -|.++|-+.|+|..|. ++.+.++..+ ||||.
T Consensus 9 drtl~v~n~~~~v~ee--------------lL~ElfiqaGPV~kv~---ip~~~d~~~k----------------Fa~v~ 55 (267)
T KOG4454|consen 9 DRTLLVQNMYSGVSEE--------------LLSELFIQAGPVYKVG---IPSGQDQEQK----------------FAYVF 55 (267)
T ss_pred hhHHHHHhhhhhhhHH--------------HHHHHhhccCceEEEe---CCCCccCCCc----------------eeeee
Confidence 4556666655554443 7899999999999998 5555555444 99999
Q ss_pred eCCHHHHHHHHH-hCCCccCCeeEEEeccCCCCCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCce
Q psy14193 103 FKNLESVEKALE-MNGHVIDEHTIRVDKALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKG 181 (239)
Q Consensus 103 f~~~e~a~~Ai~-~~~~~l~g~~i~v~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg 181 (239)
|.++-++.-|++ +||..+.+.++.+.+-...... -|...++++.+...|+.-|++..+++.++. .|.++-
T Consensus 56 f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~G~sha--------pld~r~~~ei~~~v~s~a~p~~~~R~~~~~-d~rnrn 126 (267)
T KOG4454|consen 56 FPNENSVQLAGQLENGDDLEEDEEQRTLRCGNSHA--------PLDERVTEEILYEVFSQAGPIEGVRIPTDN-DGRNRN 126 (267)
T ss_pred cccccchhhhhhhcccchhccchhhcccccCCCcc--------hhhhhcchhhheeeecccCCCCCccccccc-cCCccC
Confidence 999999999999 9999999998887644322111 166678999999999999999999999884 588888
Q ss_pred EEEEEecChHHHHHHH
Q psy14193 182 FGYVNFKAEEEELRKA 197 (239)
Q Consensus 182 ~~fV~F~~~e~a~~a~ 197 (239)
++|+.+......-.+.
T Consensus 127 ~~~~~~qr~~~~P~~~ 142 (267)
T KOG4454|consen 127 FGFVTYQRLCAVPFAL 142 (267)
T ss_pred ccchhhhhhhcCcHHh
Confidence 9999886654333343
No 114
>KOG4206|consensus
Probab=98.77 E-value=2e-08 Score=79.26 Aligned_cols=76 Identities=21% Similarity=0.265 Sum_probs=69.0
Q ss_pred CcEEEEcCCCCCCcHHHHHH----HhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeC
Q psy14193 138 SHSIFIGNIPFEAEEEELRK----AFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQ 213 (239)
Q Consensus 138 ~~~l~V~nLp~~~t~~~l~~----~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~ 213 (239)
..+|||.||+..+..++|+. +|++||.|.+|... .+.+.+|-|||.|++.+.|..|+..++|..+-|+.++.+
T Consensus 9 n~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~---kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriq 85 (221)
T KOG4206|consen 9 NGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAF---KTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQ 85 (221)
T ss_pred CceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEec---CCCCccCceEEEecChhHHHHHHHHhcCCcccCchhhee
Confidence 34999999999999999888 99999999998776 467889999999999999999999999999999999998
Q ss_pred CCC
Q psy14193 214 HTN 216 (239)
Q Consensus 214 ~~~ 216 (239)
.+.
T Consensus 86 yA~ 88 (221)
T KOG4206|consen 86 YAK 88 (221)
T ss_pred ccc
Confidence 765
No 115
>KOG4208|consensus
Probab=98.76 E-value=1.7e-08 Score=78.53 Aligned_cols=65 Identities=22% Similarity=0.358 Sum_probs=56.2
Q ss_pred HHHHHhcccC-CceeEEEEeecccccCCCccceeeecccccCCCCcceEEEEeCCHHHHHHHHH-hCCCccCCeeEEEec
Q psy14193 52 SSVTSMFKPY-GEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALE-MNGHVIDEHTIRVDK 129 (239)
Q Consensus 52 ~~l~~~F~~~-G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV~f~~~e~a~~Ai~-~~~~~l~g~~i~v~~ 129 (239)
.++..+|.+| |.|..+++ .|...||.|+|||||+|++++.|+.|-+ ||+..+.++.|.|..
T Consensus 64 ~~~~~~~~q~~g~v~r~rl-----------------sRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~v 126 (214)
T KOG4208|consen 64 TEILNYFRQFGGTVTRFRL-----------------SRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHV 126 (214)
T ss_pred HHHhhhhhhcCCeeEEEEe-----------------ecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEE
Confidence 6788888888 77777763 4677899999999999999999999999 999999999998876
Q ss_pred cCCC
Q psy14193 130 ALTT 133 (239)
Q Consensus 130 ~~~~ 133 (239)
-.+.
T Consensus 127 mppe 130 (214)
T KOG4208|consen 127 MPPE 130 (214)
T ss_pred eCch
Confidence 6554
No 116
>KOG0114|consensus
Probab=98.72 E-value=5.1e-08 Score=67.77 Aligned_cols=63 Identities=21% Similarity=0.367 Sum_probs=55.0
Q ss_pred HHHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEEEeCCHHHHHHHHH-hCCCccCCeeEEEec
Q psy14193 51 LSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALE-MNGHVIDEHTIRVDK 129 (239)
Q Consensus 51 ~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV~f~~~e~a~~Ai~-~~~~~l~g~~i~v~~ 129 (239)
.+++.++|.+||.|..|++ | .+...+|-|||.|++-.+|.+|++ |+|..+.++.+.|..
T Consensus 32 seemydlFGkyg~IrQIRi--------G------------~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vly 91 (124)
T KOG0114|consen 32 SEEMYDLFGKYGTIRQIRI--------G------------NTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLY 91 (124)
T ss_pred HHHHHHHhhcccceEEEEe--------c------------CccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEe
Confidence 3699999999999999985 1 244568999999999999999999 999999999999987
Q ss_pred cCCC
Q psy14193 130 ALTT 133 (239)
Q Consensus 130 ~~~~ 133 (239)
..+.
T Consensus 92 yq~~ 95 (124)
T KOG0114|consen 92 YQPE 95 (124)
T ss_pred cCHH
Confidence 7654
No 117
>KOG1365|consensus
Probab=98.72 E-value=1.7e-08 Score=85.13 Aligned_cols=121 Identities=17% Similarity=0.250 Sum_probs=94.3
Q ss_pred cCCCCcceEEEEeCCHHHHHHHHHhCCCccCCeeEEEeccCCC--------------------------------CCCCC
Q psy14193 91 HEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALTT--------------------------------TKSNS 138 (239)
Q Consensus 91 ~t~~~~G~afV~f~~~e~a~~Ai~~~~~~l~g~~i~v~~~~~~--------------------------------~~~~~ 138 (239)
..++..|.|||.|..+++|+.|+..|...++.+.|.+-++... ..+..
T Consensus 201 pdgrpTGdAFvlfa~ee~aq~aL~khrq~iGqRYIElFRSTaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~k 280 (508)
T KOG1365|consen 201 PDGRPTGDAFVLFACEEDAQFALRKHRQNIGQRYIELFRSTAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSK 280 (508)
T ss_pred CCCCcccceEEEecCHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCC
Confidence 3466779999999999999999987777777766665332100 01126
Q ss_pred cEEEEcCCCCCCcHHHHHHHhhcCCC-eeE--EEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEee
Q psy14193 139 HSIFIGNIPFEAEEEELRKAFESCGE-IDN--VRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRD 212 (239)
Q Consensus 139 ~~l~V~nLp~~~t~~~l~~~F~~~G~-i~~--v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~ 212 (239)
.+|.+++||++.+.++|-++|..|-. |.. +.++.+ ..|++.|-|||+|.+.|+|..|+...+.+....|.+.+
T Consensus 281 dcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N-~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEv 356 (508)
T KOG1365|consen 281 DCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLN-GQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEV 356 (508)
T ss_pred CeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEc-CCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEE
Confidence 78999999999999999999998863 333 667777 57999999999999999888888777777777777765
No 118
>KOG0153|consensus
Probab=98.70 E-value=3.6e-08 Score=82.20 Aligned_cols=79 Identities=22% Similarity=0.354 Sum_probs=66.9
Q ss_pred CCCCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHH-hCCcEeeEEEE
Q psy14193 132 TTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE-SCGEIDNVRLI 210 (239)
Q Consensus 132 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~-~~g~~~~~r~l 210 (239)
+..+..-.+|||++|...+++.+|+++|.+||+|.++++... +++|||+|.+.+.|..|+.+ .+..+++|..|
T Consensus 222 pPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~------~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl 295 (377)
T KOG0153|consen 222 PPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR------KGCAFVTFTTREAAEKAAEKSFNKLVINGFRL 295 (377)
T ss_pred CCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc------cccceeeehhhHHHHHHHHhhcceeeecceEE
Confidence 334444789999999999999999999999999999998754 56999999999988888765 56678899999
Q ss_pred eeCCCC
Q psy14193 211 RDQHTN 216 (239)
Q Consensus 211 ~~~~~~ 216 (239)
.+.|..
T Consensus 296 ~i~Wg~ 301 (377)
T KOG0153|consen 296 KIKWGR 301 (377)
T ss_pred EEEeCC
Confidence 998763
No 119
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=98.70 E-value=7.5e-08 Score=63.10 Aligned_cols=60 Identities=32% Similarity=0.557 Sum_probs=50.0
Q ss_pred HHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEEEeCCHHHHHHHHH-hCCCccCCeeEEEec
Q psy14193 52 SSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALE-MNGHVIDEHTIRVDK 129 (239)
Q Consensus 52 ~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV~f~~~e~a~~Ai~-~~~~~l~g~~i~v~~ 129 (239)
++|+++|+.||+|..+.+ ..+ ..+ .++|+|||+|.+.++|..|++ +++..+.|+.+.|.+
T Consensus 14 ~~i~~~~~~~g~i~~~~~---~~~--------------~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 14 EDLRELFSKFGKVESVRI---VRD--------------KDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred HHHHHHHHhcCCEEEEEE---eeC--------------CCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 599999999999999884 221 111 456899999999999999999 999999999998763
No 120
>KOG0415|consensus
Probab=98.64 E-value=2.4e-08 Score=83.44 Aligned_cols=65 Identities=23% Similarity=0.408 Sum_probs=60.8
Q ss_pred HHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEEEeCCHHHHHHHHH-hCCCccCCeeEEEecc
Q psy14193 52 SSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALE-MNGHVIDEHTIRVDKA 130 (239)
Q Consensus 52 ~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV~f~~~e~a~~Ai~-~~~~~l~g~~i~v~~~ 130 (239)
+||.-+|+.||+|.+|. |++|..||.+.-||||+|.+.+++++|.- |++..|+.+.|.|.++
T Consensus 254 eDLeiIFSrFG~i~sce-----------------VIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFS 316 (479)
T KOG0415|consen 254 EDLEIIFSRFGKIVSCE-----------------VIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFS 316 (479)
T ss_pred cchhhHHhhcccceeee-----------------EEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeehh
Confidence 89999999999999987 68899999999999999999999999999 9999999999999887
Q ss_pred CCC
Q psy14193 131 LTT 133 (239)
Q Consensus 131 ~~~ 133 (239)
..-
T Consensus 317 QSV 319 (479)
T KOG0415|consen 317 QSV 319 (479)
T ss_pred hhh
Confidence 543
No 121
>KOG4661|consensus
Probab=98.64 E-value=8.1e-08 Score=84.85 Aligned_cols=78 Identities=10% Similarity=0.276 Sum_probs=72.4
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeCCC
Q psy14193 138 SHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHT 215 (239)
Q Consensus 138 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~~~ 215 (239)
.++|||.+|...+...+|+++|++||.|+-..++.+..+.-.+.||||++.+.++|.++|..|+-..+.|++|.|..+
T Consensus 405 gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEka 482 (940)
T KOG4661|consen 405 GRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKA 482 (940)
T ss_pred ccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeec
Confidence 689999999999999999999999999999999988767777999999999999999999999999999999998754
No 122
>KOG0533|consensus
Probab=98.59 E-value=1.5e-07 Score=76.52 Aligned_cols=78 Identities=19% Similarity=0.318 Sum_probs=71.4
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeCCCC
Q psy14193 138 SHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTN 216 (239)
Q Consensus 138 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~~~~ 216 (239)
..+|+|.|||+.+++++|+++|..||++..+-+..+ ..|.+.|.|-|.|...+||.+++..++|..++|+.+......
T Consensus 83 ~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~-~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~ 160 (243)
T KOG0533|consen 83 STKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYD-RAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIIS 160 (243)
T ss_pred cceeeeecCCcCcchHHHHHHHHHhccceEEeeccC-CCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEec
Confidence 468999999999999999999999999999999988 489999999999999999999999999999999998775443
No 123
>KOG4209|consensus
Probab=98.48 E-value=2e-07 Score=75.79 Aligned_cols=77 Identities=27% Similarity=0.385 Sum_probs=70.3
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeC
Q psy14193 136 SNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQ 213 (239)
Q Consensus 136 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~ 213 (239)
.+...+||+|+.+.+|.+++...|+.||.+..+.++.|..+|.++||+||+|.+.+....++. ++|..+.++.+.+.
T Consensus 99 ~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt 175 (231)
T KOG4209|consen 99 VDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVT 175 (231)
T ss_pred cCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceee
Confidence 347899999999999999999999999999999999999888999999999999997777777 99999999888775
No 124
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.48 E-value=1.2e-06 Score=61.22 Aligned_cols=68 Identities=24% Similarity=0.308 Sum_probs=60.9
Q ss_pred cEEEEcCCCCCCcHHHHHHHhhc--CCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEee
Q psy14193 139 HSIFIGNIPFEAEEEELRKAFES--CGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDN 206 (239)
Q Consensus 139 ~~l~V~nLp~~~t~~~l~~~F~~--~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~ 206 (239)
+||.+.|+|...|.++|.+++.. .|....+.++.|..++.+.|||||.|.+++.+.+-....+|..+.
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~ 71 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWP 71 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccc
Confidence 68999999999999999988875 467788899999989999999999999999888888889998874
No 125
>KOG1456|consensus
Probab=98.46 E-value=4.8e-06 Score=70.40 Aligned_cols=176 Identities=13% Similarity=0.136 Sum_probs=127.5
Q ss_pred cccccccccceeEEeehhhHhhhhhcCCCcchh------------hchhHHHHHHhcccCCceeEEEEeecccccCCCcc
Q psy14193 14 PTQNRNLMSKLKVFLNIWKMALKLKMNPSLTKS------------KNHALSSVTSMFKPYGEVETVRFRSVPVADITLPR 81 (239)
Q Consensus 14 ~~~n~~~~~~~~v~v~~~~~~~~~~~~~~~~~~------------k~~r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~ 81 (239)
.+-|.-.++|.+-++++...+.-+....+.... -...++-|..+....|+|..|.+ .. .+|
T Consensus 87 aa~n~i~i~gq~Al~NyStsq~i~R~g~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvI---fk-kng--- 159 (494)
T KOG1456|consen 87 AADNQIYIAGQQALFNYSTSQCIERPGDESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVI---FK-KNG--- 159 (494)
T ss_pred hccCcccccCchhhcccchhhhhccCCCCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEE---Ee-ccc---
Confidence 345666778888888877555333222111111 01122899999999999998873 11 111
Q ss_pred ceeeecccccCCCCcceEEEEeCCHHHHHHHHH-hCCCccCC--eeEEEeccCCCCCC----------------------
Q psy14193 82 KACIKMNKVHEKRTNMNAYVRFKNLESVEKALE-MNGHVIDE--HTIRVDKALTTTKS---------------------- 136 (239)
Q Consensus 82 ~~~~~~~~~~t~~~~G~afV~f~~~e~a~~Ai~-~~~~~l~g--~~i~v~~~~~~~~~---------------------- 136 (239)
--|.|+|++.+.|++|.+ |||..|.. -.|+|.+++|..-.
T Consensus 160 ---------------VQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIeyAkP~rlnV~knd~DtwDyTlp~~~~~~~~ 224 (494)
T KOG1456|consen 160 ---------------VQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEYAKPTRLNVQKNDKDTWDYTLPDLRGPYDP 224 (494)
T ss_pred ---------------eeeEEeechhHHHHHHHhhcccccccccceeEEEEecCcceeeeeecCCccccccCCCCCCCCCC
Confidence 259999999999999999 99999954 45555555433211
Q ss_pred -------------------------------------------------------------CCcEEEEcCCCCC-CcHHH
Q psy14193 137 -------------------------------------------------------------NSHSIFIGNIPFE-AEEEE 154 (239)
Q Consensus 137 -------------------------------------------------------------~~~~l~V~nLp~~-~t~~~ 154 (239)
+.+.+.|.+|... +.-+.
T Consensus 225 g~~~~~r~~~p~~~~~~pss~~G~h~~y~sg~~~~p~~~~P~r~~~~~~~~~g~a~p~g~~~g~VmMVyGLdh~k~N~dr 304 (494)
T KOG1456|consen 225 GRNHYDRQRQPAPLGYHPSSRGGGHSGYYSGDRHGPPHPPPSRYRDGYRDGRGYASPGGGAPGCVMMVYGLDHGKMNCDR 304 (494)
T ss_pred CCCCCccccCCCccCCChhhcCCCCCCCcccccCCCCCCCCCCCccccccCCCCCCCCCCCCCcEEEEEeccccccchhh
Confidence 1577888888865 57799
Q ss_pred HHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeCCCC
Q psy14193 155 LRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTN 216 (239)
Q Consensus 155 l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~~~~ 216 (239)
|.++|-.||.|.++.+++.+ .|-|.|+..+..+-.+++.-+|+..+-|..|.+..+.
T Consensus 305 lFNl~ClYGNV~rvkFmkTk-----~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~Sk 361 (494)
T KOG1456|consen 305 LFNLFCLYGNVERVKFMKTK-----PGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCVSK 361 (494)
T ss_pred hhhhhhhcCceeeEEEeecc-----cceeEEEcCcHHHHHHHHHHhccCccccceEEEeecc
Confidence 99999999999999999773 4579999999998889999999998888888775443
No 126
>KOG4661|consensus
Probab=98.44 E-value=4.2e-07 Score=80.43 Aligned_cols=89 Identities=12% Similarity=0.243 Sum_probs=69.1
Q ss_pred cccccccccceeEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCC
Q psy14193 14 PTQNRNLMSKLKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEK 93 (239)
Q Consensus 14 ~~~n~~~~~~~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~ 93 (239)
..-||+.-.|+.+.|.-+..-. |..+|+.+|++||.|.-.++ +-.-.+.
T Consensus 396 k~ekgrs~~gRNlWVSGLSstT--------------RAtDLKnlFSKyGKVvGAKV-----------------VTNaRsP 444 (940)
T KOG4661|consen 396 KSEKGRSTLGRNLWVSGLSSTT--------------RATDLKNLFSKYGKVVGAKV-----------------VTNARSP 444 (940)
T ss_pred cccccccccccceeeeccccch--------------hhhHHHHHHHHhcceeceee-----------------eecCCCC
Confidence 3446666677777776554433 33599999999999998773 2233455
Q ss_pred CCcceEEEEeCCHHHHHHHHH-hCCCccCCeeEEEeccCCC
Q psy14193 94 RTNMNAYVRFKNLESVEKALE-MNGHVIDEHTIRVDKALTT 133 (239)
Q Consensus 94 ~~~G~afV~f~~~e~a~~Ai~-~~~~~l~g~~i~v~~~~~~ 133 (239)
..++||||+..+.++|.+||+ |+.+.|.|+.|.|..+...
T Consensus 445 GaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaKNE 485 (940)
T KOG4661|consen 445 GARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAKNE 485 (940)
T ss_pred CcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeecccC
Confidence 567899999999999999999 9999999999999887644
No 127
>KOG0129|consensus
Probab=98.42 E-value=1.7e-06 Score=75.93 Aligned_cols=98 Identities=21% Similarity=0.395 Sum_probs=79.0
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCC---CCCCce---EEEEEecChHHHHHHH--------------
Q psy14193 138 SHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQH---TNIGKG---FGYVNFKAEEEELRKA-------------- 197 (239)
Q Consensus 138 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~---tg~~kg---~~fV~F~~~e~a~~a~-------------- 197 (239)
.++||||+||++++|++|...|..||.+. +.++.... .-.++| |+|+.|+++. +.+++
T Consensus 259 S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~-sV~~Ll~aC~~~~~~~yf~ 336 (520)
T KOG0129|consen 259 SRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDER-SVQSLLSACSEGEGNYYFK 336 (520)
T ss_pred ccceeecCCCccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchH-HHHHHHHHHhhcccceEEE
Confidence 78999999999999999999999999865 55553211 112566 9999999886 44444
Q ss_pred -------------------------------------------------------HHhCCcEeeEEEEeeCCCCCCcceE
Q psy14193 198 -------------------------------------------------------FESCGEIDNVRLIRDQHTNIGKGFG 222 (239)
Q Consensus 198 -------------------------------------------------------~~~~g~~~~~r~l~~~~~~~~~G~~ 222 (239)
..+.|.++-.-+=+++.-.-++|-|
T Consensus 337 vss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaG 416 (520)
T KOG0129|consen 337 VSSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAG 416 (520)
T ss_pred EecCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcc
Confidence 1478888888888887777899999
Q ss_pred EEEeCChHHHHhhhh
Q psy14193 223 YVNFKVSFTTLSSIF 237 (239)
Q Consensus 223 fv~f~~~~~a~~a~~ 237 (239)
-|.|+|+++-++||-
T Consensus 417 RVtFsnqqsYi~AIs 431 (520)
T KOG0129|consen 417 RVTFSNQQAYIKAIS 431 (520)
T ss_pred eeeecccHHHHHHHh
Confidence 999999999999984
No 128
>KOG0116|consensus
Probab=98.42 E-value=4.6e-07 Score=79.29 Aligned_cols=75 Identities=20% Similarity=0.255 Sum_probs=60.9
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeC
Q psy14193 138 SHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQ 213 (239)
Q Consensus 138 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~ 213 (239)
..+|||+|||.+++.++|.++|..||+|+..+|......++..+||||+|.+.+++..++.. +-..++++.|.+.
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Ve 362 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVE 362 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEE
Confidence 56699999999999999999999999999988766543455559999999999966655554 4777788888775
No 129
>KOG0153|consensus
Probab=98.37 E-value=7.5e-07 Score=74.48 Aligned_cols=60 Identities=28% Similarity=0.509 Sum_probs=52.5
Q ss_pred HHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEEEeCCHHHHHHHHH--hCCCccCCeeEEEec
Q psy14193 52 SSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALE--MNGHVIDEHTIRVDK 129 (239)
Q Consensus 52 ~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV~f~~~e~a~~Ai~--~~~~~l~g~~i~v~~ 129 (239)
.+|+++|.+||+|.++++ .+ .+|.|||+|.+.++|+.|.+ +|...|.|+.|.|.|
T Consensus 243 ~dIrdhFyqyGeirsi~~--~~---------------------~~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~W 299 (377)
T KOG0153|consen 243 QDIRDHFYQYGEIRSIRI--LP---------------------RKGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKW 299 (377)
T ss_pred HHHHHHHhhcCCeeeEEe--ec---------------------ccccceeeehhhHHHHHHHHhhcceeeecceEEEEEe
Confidence 699999999999999985 21 24799999999999999999 787788999999999
Q ss_pred cCCCC
Q psy14193 130 ALTTT 134 (239)
Q Consensus 130 ~~~~~ 134 (239)
..+.+
T Consensus 300 g~~~~ 304 (377)
T KOG0153|consen 300 GRPKQ 304 (377)
T ss_pred CCCcc
Confidence 98843
No 130
>KOG1548|consensus
Probab=98.35 E-value=1.4e-06 Score=72.91 Aligned_cols=77 Identities=18% Similarity=0.265 Sum_probs=69.2
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhcCCCee--------EEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEE
Q psy14193 138 SHSIFIGNIPFEAEEEELRKAFESCGEID--------NVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRL 209 (239)
Q Consensus 138 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~--------~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~ 209 (239)
...|||.|||.++|.+++.++|+.||-|. .|.+.++ ..|..+|-|.++|-..++..-|+.-|++..++|+.
T Consensus 134 Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd-~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~~ 212 (382)
T KOG1548|consen 134 NTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRD-NQGKLKGDALCCYIKRESVELAIKILDEDELRGKK 212 (382)
T ss_pred CceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEec-CCCCccCceEEEeecccHHHHHHHHhCcccccCcE
Confidence 56799999999999999999999999775 3778888 46999999999999999888999999999999999
Q ss_pred EeeCCC
Q psy14193 210 IRDQHT 215 (239)
Q Consensus 210 l~~~~~ 215 (239)
|+|+.+
T Consensus 213 ~rVerA 218 (382)
T KOG1548|consen 213 LRVERA 218 (382)
T ss_pred EEEehh
Confidence 999754
No 131
>KOG4660|consensus
Probab=98.22 E-value=8.7e-07 Score=78.29 Aligned_cols=71 Identities=21% Similarity=0.280 Sum_probs=64.3
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEee
Q psy14193 137 NSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRD 212 (239)
Q Consensus 137 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~ 212 (239)
+..+|+|-|||.+++.++|..+|+.||+|..++. |-..+|.+||+|-+..+|.+|+.++++..+.++.+..
T Consensus 74 ~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~-----t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k~ 144 (549)
T KOG4660|consen 74 NQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRE-----TPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIKR 144 (549)
T ss_pred ccceEEEEecCCcCCHHHHHHHHHhhcchhhhhc-----ccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhcC
Confidence 4789999999999999999999999999998654 3446889999999999999999999999999998883
No 132
>KOG0226|consensus
Probab=98.19 E-value=1.2e-06 Score=70.51 Aligned_cols=63 Identities=16% Similarity=0.352 Sum_probs=54.4
Q ss_pred HHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEEEeCCHHHHHHHHH-hCCCccCCeeEEEecc
Q psy14193 52 SSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALE-MNGHVIDEHTIRVDKA 130 (239)
Q Consensus 52 ~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV~f~~~e~a~~Ai~-~~~~~l~g~~i~v~~~ 130 (239)
+.|...|.+|-.-.. +.+++|..|++++|||||.|.+.+++..|+. |+|..++.++|....+
T Consensus 205 ~vl~raf~Kfpsf~~-----------------akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRkS 267 (290)
T KOG0226|consen 205 DVLARAFKKFPSFQK-----------------AKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRKS 267 (290)
T ss_pred HHHHHHHHhccchhh-----------------ccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhhh
Confidence 567778888876554 3478999999999999999999999999999 9999999999988665
Q ss_pred C
Q psy14193 131 L 131 (239)
Q Consensus 131 ~ 131 (239)
.
T Consensus 268 ~ 268 (290)
T KOG0226|consen 268 E 268 (290)
T ss_pred h
Confidence 4
No 133
>KOG0106|consensus
Probab=98.18 E-value=1.8e-06 Score=68.75 Aligned_cols=69 Identities=22% Similarity=0.492 Sum_probs=62.3
Q ss_pred cEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeCCC
Q psy14193 139 HSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHT 215 (239)
Q Consensus 139 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~~~ 215 (239)
..+||++||+.+.+.++..+|..||.+..+.+. .||+||+|.+..+|..|+..++|.++.+..+.+.++
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk--------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~ 70 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK--------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHA 70 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee--------cccceeccCchhhhhcccchhcCceecceeeeeecc
Confidence 368999999999999999999999999988774 458999999999999999999999999998777654
No 134
>KOG0112|consensus
Probab=98.17 E-value=1.2e-06 Score=81.16 Aligned_cols=131 Identities=18% Similarity=0.264 Sum_probs=105.1
Q ss_pred HHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEEEeCCHHHHHHHHH-hCCCccCCeeEEEecc
Q psy14193 52 SSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALE-MNGHVIDEHTIRVDKA 130 (239)
Q Consensus 52 ~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV~f~~~e~a~~Ai~-~~~~~l~g~~i~v~~~ 130 (239)
.+|+..|..+|.|.+|.+.. +.-+...-||||.|.+...+-.|.. +.+..|....+.+...
T Consensus 387 seiR~af~e~gkve~VDiKt------------------P~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG 448 (975)
T KOG0112|consen 387 SEIRPAFDESGKVEEVDIKT------------------PHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLG 448 (975)
T ss_pred hhhhhhhhhhcccccccccc------------------CCCCcccchhhhhhhccccCcccchhhcCCccccCccccccc
Confidence 69999999999999998521 1122334599999999999999988 8888887666666665
Q ss_pred CCCCCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeE
Q psy14193 131 LTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNV 207 (239)
Q Consensus 131 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~ 207 (239)
.+ .......+|+++|+..+....|...|..||.|..|.+-. | .-|++|.|++...++.|...+-|..+++
T Consensus 449 ~~-kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~h----g--q~yayi~yes~~~aq~a~~~~rgap~G~ 518 (975)
T KOG0112|consen 449 QP-KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRH----G--QPYAYIQYESPPAAQAATHDMRGAPLGG 518 (975)
T ss_pred cc-ccccceeeccCCCCCCChHHHHHHHhhccCcceeeeccc----C--CcceeeecccCccchhhHHHHhcCcCCC
Confidence 54 333467899999999999999999999999999876643 2 2399999999998888888888887765
No 135
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.16 E-value=6.7e-06 Score=55.18 Aligned_cols=72 Identities=19% Similarity=0.284 Sum_probs=47.7
Q ss_pred cEEEEcCCCCCCcHHH----HHHHhhcCC-CeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeC
Q psy14193 139 HSIFIGNIPFEAEEEE----LRKAFESCG-EIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQ 213 (239)
Q Consensus 139 ~~l~V~nLp~~~t~~~----l~~~F~~~G-~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~ 213 (239)
..|+|.|||.+.+... |++++..|| .|..+ +.+-|.|.|.+++.|.+|...|+|..+-|+.|.++
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v----------~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV----------SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE----------eCCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 3689999999888655 456777887 45554 13469999999999999999999999999999998
Q ss_pred CCCCCcc
Q psy14193 214 HTNIGKG 220 (239)
Q Consensus 214 ~~~~~~G 220 (239)
.+.+++.
T Consensus 73 ~~~~~r~ 79 (90)
T PF11608_consen 73 FSPKNRE 79 (90)
T ss_dssp SS--S--
T ss_pred EcCCccc
Confidence 8765554
No 136
>KOG0132|consensus
Probab=98.13 E-value=5.5e-06 Score=75.88 Aligned_cols=89 Identities=18% Similarity=0.381 Sum_probs=68.6
Q ss_pred hHHHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEEEeCCHHHHHHHHH-hCCCccCCeeEEEe
Q psy14193 50 ALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALE-MNGHVIDEHTIRVD 128 (239)
Q Consensus 50 r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV~f~~~e~a~~Ai~-~~~~~l~g~~i~v~ 128 (239)
+..||.++|+.||+|.+|.+ + .++|+|||......+|++|+. |+...+.++.|++.
T Consensus 434 ~e~dL~~~feefGeiqSi~l--i---------------------~~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~ 490 (894)
T KOG0132|consen 434 TEQDLANLFEEFGEIQSIIL--I---------------------PPRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIA 490 (894)
T ss_pred hHHHHHHHHHhcccceeEee--c---------------------cCCceeEEEEeehhHHHHHHHHHhcccccceeeEEe
Confidence 33799999999999999986 2 346899999999999999999 99999999999999
Q ss_pred ccCCCCCCC------CcEEEEcCCCCCCcHHHHHHHhhc
Q psy14193 129 KALTTTKSN------SHSIFIGNIPFEAEEEELRKAFES 161 (239)
Q Consensus 129 ~~~~~~~~~------~~~l~V~nLp~~~t~~~l~~~F~~ 161 (239)
|+.....+. ...+=|.-||++--.+++..+++.
T Consensus 491 Wa~g~G~kse~k~~wD~~lGVt~IP~~kLt~dl~~~~eg 529 (894)
T KOG0132|consen 491 WAVGKGPKSEYKDYWDVELGVTYIPWEKLTDDLEAWCEG 529 (894)
T ss_pred eeccCCcchhhhhhhhcccCeeEeehHhcCHHHHHhhhh
Confidence 998776554 112234446765444446666543
No 137
>KOG4454|consensus
Probab=98.07 E-value=1.5e-06 Score=68.37 Aligned_cols=74 Identities=20% Similarity=0.204 Sum_probs=66.1
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeC
Q psy14193 138 SHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQ 213 (239)
Q Consensus 138 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~ 213 (239)
.++|||+|+...++++-|.++|-.-|+|..+.|+.++ .+..+ ||||.|.++....-|+.-+||..+.++.+.++
T Consensus 9 drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~-d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~ 82 (267)
T KOG4454|consen 9 DRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQ-DQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRT 82 (267)
T ss_pred hhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCc-cCCCc-eeeeecccccchhhhhhhcccchhccchhhcc
Confidence 6799999999999999999999999999999998885 56667 99999999998888999999998877777654
No 138
>KOG0151|consensus
Probab=98.07 E-value=9.2e-06 Score=73.81 Aligned_cols=78 Identities=18% Similarity=0.298 Sum_probs=69.0
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecC---CCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeCC
Q psy14193 138 SHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQ---HTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQH 214 (239)
Q Consensus 138 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~---~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~~ 214 (239)
.+++||+||++.++++.|...|+.||+|.++++++.+ .....+-+|||-|-+..++.+|+..|+|.++....++.-|
T Consensus 174 TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K~gW 253 (877)
T KOG0151|consen 174 TTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMKLGW 253 (877)
T ss_pred ccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeeeecc
Confidence 7899999999999999999999999999999988664 2234567899999999999999999999999999988755
Q ss_pred C
Q psy14193 215 T 215 (239)
Q Consensus 215 ~ 215 (239)
+
T Consensus 254 g 254 (877)
T KOG0151|consen 254 G 254 (877)
T ss_pred c
Confidence 4
No 139
>KOG4307|consensus
Probab=97.89 E-value=2.1e-05 Score=71.36 Aligned_cols=145 Identities=11% Similarity=0.115 Sum_probs=111.1
Q ss_pred HHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEEEeCCHHHHHHHHHhCCCccCCeeEEEeccC
Q psy14193 52 SSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKAL 131 (239)
Q Consensus 52 ~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV~f~~~e~a~~Ai~~~~~~l~g~~i~v~~~~ 131 (239)
.|++++|.-- .|.++.| ..+.-.+...|-++|.|....++.+|++-|....-.+.+.+.++.
T Consensus 326 nd~rkfF~g~-~~~~~~l-----------------~~~~v~~~~tG~~~v~f~~~~~~q~A~~rn~~~~~~R~~q~~P~g 387 (944)
T KOG4307|consen 326 NDGRKFFPGR-NAQSTDL-----------------SENRVAPPQTGRKTVMFTPQAPFQNAFTRNPSDDVNRPFQTGPPG 387 (944)
T ss_pred chhhhhcCcc-cccccch-----------------hhhhcCCCcCCceEEEecCcchHHHHHhcCchhhhhcceeecCCC
Confidence 6899998643 2444442 112222223688999999999999999988888888888886643
Q ss_pred CCCCC----------------------------------------CCcEEEEcCCCCCCcHHHHHHHhhcCCCeeE-EEE
Q psy14193 132 TTTKS----------------------------------------NSHSIFIGNIPFEAEEEELRKAFESCGEIDN-VRL 170 (239)
Q Consensus 132 ~~~~~----------------------------------------~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~-v~i 170 (239)
..... ...+|||..||..+++..+.++|...-.|++ |.+
T Consensus 388 ~~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~l 467 (944)
T KOG4307|consen 388 NLGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIEL 467 (944)
T ss_pred ccccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhhhhhheeEe
Confidence 22110 1688999999999999999999998777776 666
Q ss_pred eecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeCCC
Q psy14193 171 IRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHT 215 (239)
Q Consensus 171 ~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~~~ 215 (239)
-+. .++..++.|||.|..++++..|+...+-..++.|.|+|...
T Consensus 468 t~~-P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si 511 (944)
T KOG4307|consen 468 TRL-PTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSI 511 (944)
T ss_pred ccC-CcccccchhhheeccccccchhhhcccccccCceEEEeech
Confidence 555 47888999999999988888898888888999999999744
No 140
>KOG4676|consensus
Probab=97.83 E-value=1.1e-05 Score=68.61 Aligned_cols=137 Identities=17% Similarity=0.203 Sum_probs=101.2
Q ss_pred HHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEEEeCCHHHHHHHHHhCCCccCCeeEEEeccC
Q psy14193 52 SSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKAL 131 (239)
Q Consensus 52 ~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV~f~~~e~a~~Ai~~~~~~l~g~~i~v~~~~ 131 (239)
++++.+|...|+|.+++| ++...+ ..-....-.|||.|.+...+..|..|.++.+-+..|.|.+..
T Consensus 22 dqm~tlFg~lGkI~elrl--yp~~~d------------~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvdraliv~p~~ 87 (479)
T KOG4676|consen 22 DQMQTLFGNLGKIPELRL--YPNVDD------------SKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVDRALIVRPYG 87 (479)
T ss_pred HHHHHHHhhccccccccc--cCCCCC------------ccCcceeeeEEEeccCCcceeHHhhhccceeeeeeEEEEecC
Confidence 599999999999999986 553221 112223447999999999999998887787777777775543
Q ss_pred CCCCC---------------------------------------------------------CCcEEEEcCCCCCCcHHH
Q psy14193 132 TTTKS---------------------------------------------------------NSHSIFIGNIPFEAEEEE 154 (239)
Q Consensus 132 ~~~~~---------------------------------------------------------~~~~l~V~nLp~~~t~~~ 154 (239)
..... -.++++|.+|+..+...+
T Consensus 88 ~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~~l~e 167 (479)
T KOG4676|consen 88 DEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLISAAILPE 167 (479)
T ss_pred CCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcchhhhcchh
Confidence 32221 057899999999999999
Q ss_pred HHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeE
Q psy14193 155 LRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNV 207 (239)
Q Consensus 155 l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~ 207 (239)
+.+.|..+|++.+..+- .+...-+|-++|.... ...-++.++|..+..
T Consensus 168 ~~e~f~r~Gev~ya~~a----sk~~s~~c~~sf~~qt-s~~halr~~gre~k~ 215 (479)
T KOG4676|consen 168 SGESFERKGEVSYAHTA----SKSRSSSCSHSFRKQT-SSKHALRSHGRERKR 215 (479)
T ss_pred hhhhhhhcchhhhhhhh----ccCCCcchhhhHhhhh-hHHHHHHhcchhhhh
Confidence 99999999999887764 3334557889998877 445556677776653
No 141
>KOG1457|consensus
Probab=97.82 E-value=7.7e-05 Score=59.16 Aligned_cols=69 Identities=13% Similarity=0.225 Sum_probs=55.9
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCC-CCceEEEEEecChHHHHHHHHHhCCcEee
Q psy14193 138 SHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTN-IGKGFGYVNFKAEEEELRKAFESCGEIDN 206 (239)
Q Consensus 138 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg-~~kg~~fV~F~~~e~a~~a~~~~~g~~~~ 206 (239)
-++|||.+||.++..-+|..+|..|-.-+.+.+......+ ..+-+||+.|.+..+|..|...+||..++
T Consensus 34 VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFD 103 (284)
T KOG1457|consen 34 VRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFD 103 (284)
T ss_pred cceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeec
Confidence 6899999999999999999999998766666554332111 22468999999999999999999999874
No 142
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.78 E-value=6.8e-05 Score=53.53 Aligned_cols=56 Identities=23% Similarity=0.361 Sum_probs=35.9
Q ss_pred cEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHh
Q psy14193 139 HSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFES 200 (239)
Q Consensus 139 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~ 200 (239)
+.|++.+++..++.++|++.|+.||+|.+|.+.+.. .-|||.|.+++.|..++..+
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~------~~g~VRf~~~~~A~~a~~~~ 57 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGD------TEGYVRFKTPEAAQKALEKL 57 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-------SEEEEEESS---HHHHHHHH
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCC------CEEEEEECCcchHHHHHHHH
Confidence 568899999999999999999999999999886542 26899999999888777654
No 143
>KOG4209|consensus
Probab=97.78 E-value=4.4e-05 Score=62.17 Aligned_cols=65 Identities=25% Similarity=0.342 Sum_probs=55.9
Q ss_pred HHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEEEeCCHHHHHHHHHhCCCccCCeeEEEeccC
Q psy14193 52 SSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKAL 131 (239)
Q Consensus 52 ~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV~f~~~e~a~~Ai~~~~~~l~g~~i~v~~~~ 131 (239)
+++...|+.||.|..+.+ ..|..++.++||+||+|.+.+.++.|+.+++..+.++.+.|.+..
T Consensus 116 ~~~e~hf~~Cg~i~~~ti-----------------~~d~~~~~~k~~~yvef~~~~~~~~ay~l~gs~i~~~~i~vt~~r 178 (231)
T KOG4209|consen 116 TKIELHFESCGGINRVTV-----------------PKDKFRGHPKGFAYVEFSSYELVEEAYKLDGSEIPGPAIEVTLKR 178 (231)
T ss_pred chhhheeeccCCccceee-----------------eccccCCCcceeEEEecccHhhhHHHhhcCCcccccccceeeeee
Confidence 579999999999987763 345666678899999999999999999999999999999998765
Q ss_pred CC
Q psy14193 132 TT 133 (239)
Q Consensus 132 ~~ 133 (239)
..
T Consensus 179 ~~ 180 (231)
T KOG4209|consen 179 TN 180 (231)
T ss_pred ee
Confidence 44
No 144
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.54 E-value=0.00028 Score=47.47 Aligned_cols=55 Identities=25% Similarity=0.306 Sum_probs=40.2
Q ss_pred HHHHHhcccCC-ceeEEEEeecccccCCCccceeeecccccCCCCcceEEEEeCCHHHHHHHHH-hCCCccCCeeEEEec
Q psy14193 52 SSVTSMFKPYG-EVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALE-MNGHVIDEHTIRVDK 129 (239)
Q Consensus 52 ~~l~~~F~~~G-~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV~f~~~e~a~~Ai~-~~~~~l~g~~i~v~~ 129 (239)
.-|++++..|| .|.+|. .|-|+|.|.+.+.|++|.+ |+|....|.+|.|.+
T Consensus 21 ~RL~qLsdNCGGkVl~v~---------------------------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~ 73 (90)
T PF11608_consen 21 NRLRQLSDNCGGKVLSVS---------------------------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSF 73 (90)
T ss_dssp HHHHHHHHTTT--EEE-----------------------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEES
T ss_pred HHHHHHhhccCCEEEEEe---------------------------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEEE
Confidence 47888999997 687764 3679999999999999999 999999999999998
Q ss_pred cCCC
Q psy14193 130 ALTT 133 (239)
Q Consensus 130 ~~~~ 133 (239)
....
T Consensus 74 ~~~~ 77 (90)
T PF11608_consen 74 SPKN 77 (90)
T ss_dssp S--S
T ss_pred cCCc
Confidence 7544
No 145
>KOG0116|consensus
Probab=97.49 E-value=0.00014 Score=63.92 Aligned_cols=65 Identities=17% Similarity=0.322 Sum_probs=51.6
Q ss_pred HHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEEEeCCHHHHHHHHHhCCCccCCeeEEEeccC
Q psy14193 52 SSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKAL 131 (239)
Q Consensus 52 ~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV~f~~~e~a~~Ai~~~~~~l~g~~i~v~~~~ 131 (239)
.+|+++|..||+|....+... . ..+...+||||+|.+.+++..|++.+...++++++.|..-.
T Consensus 303 ~~l~~~Fk~FG~Ik~~~I~vr----------------~-~~~~~~~fgFV~f~~~~~~~~~i~Asp~~ig~~kl~Veek~ 365 (419)
T KOG0116|consen 303 AELEEVFKQFGPIKEGGIQVR----------------S-PGGKNPCFGFVEFENAAAVQNAIEASPLEIGGRKLNVEEKR 365 (419)
T ss_pred HHHHHHHhhcccccccceEEe----------------c-cCCCcCceEEEEEeecchhhhhhhcCccccCCeeEEEEecc
Confidence 589999999999998875211 1 11233389999999999999999977889999999998665
Q ss_pred CC
Q psy14193 132 TT 133 (239)
Q Consensus 132 ~~ 133 (239)
+.
T Consensus 366 ~~ 367 (419)
T KOG0116|consen 366 PG 367 (419)
T ss_pred cc
Confidence 43
No 146
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.48 E-value=0.00027 Score=59.31 Aligned_cols=76 Identities=20% Similarity=0.378 Sum_probs=59.2
Q ss_pred CcEEEEcCCCCCCcHHH----H--HHHhhcCCCeeEEEEeecCCC-CCCce-E-EEEEecChHHHHHHHHHhCCcEeeEE
Q psy14193 138 SHSIFIGNIPFEAEEEE----L--RKAFESCGEIDNVRLIRDQHT-NIGKG-F-GYVNFKAEEEELRKAFESCGEIDNVR 208 (239)
Q Consensus 138 ~~~l~V~nLp~~~t~~~----l--~~~F~~~G~i~~v~i~~~~~t-g~~kg-~-~fV~F~~~e~a~~a~~~~~g~~~~~r 208 (239)
..-+||-+||+.+..++ | .++|++||.|..+.+-+.-.+ ..-.+ + .||.|.+.|||++++.+.+|.+++||
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr 193 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGR 193 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCc
Confidence 45789999998887665 2 589999999998876543211 11122 2 39999999999999999999999999
Q ss_pred EEeeC
Q psy14193 209 LIRDQ 213 (239)
Q Consensus 209 ~l~~~ 213 (239)
.|+..
T Consensus 194 ~lkat 198 (480)
T COG5175 194 VLKAT 198 (480)
T ss_pred eEeee
Confidence 99874
No 147
>KOG0533|consensus
Probab=97.46 E-value=0.00029 Score=57.44 Aligned_cols=65 Identities=22% Similarity=0.420 Sum_probs=54.3
Q ss_pred HHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEEEeCCHHHHHHHHH-hCCCccCCeeEEEecc
Q psy14193 52 SSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALE-MNGHVIDEHTIRVDKA 130 (239)
Q Consensus 52 ~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV~f~~~e~a~~Ai~-~~~~~l~g~~i~v~~~ 130 (239)
+||+++|..||.+..+- +-.++ .+++.|.|=|.|...++|+.|++ +++..++|+++.+...
T Consensus 98 ~Dl~eLF~~~~~~~r~~---vhy~~---------------~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i 159 (243)
T KOG0533|consen 98 ADLKELFAEFGELKRVA---VHYDR---------------AGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEII 159 (243)
T ss_pred HHHHHHHHHhccceEEe---eccCC---------------CCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEe
Confidence 79999999999877765 34443 35667999999999999999999 9999999999998776
Q ss_pred CCCC
Q psy14193 131 LTTT 134 (239)
Q Consensus 131 ~~~~ 134 (239)
.+..
T Consensus 160 ~~~~ 163 (243)
T KOG0533|consen 160 SSPS 163 (243)
T ss_pred cCcc
Confidence 6553
No 148
>KOG0115|consensus
Probab=97.45 E-value=0.00035 Score=56.56 Aligned_cols=86 Identities=21% Similarity=0.280 Sum_probs=74.2
Q ss_pred HHHHHHH-hCCCccCCeeEEEeccCCCCCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEE
Q psy14193 108 SVEKALE-MNGHVIDEHTIRVDKALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVN 186 (239)
Q Consensus 108 ~a~~Ai~-~~~~~l~g~~i~v~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~ 186 (239)
-|+.|-. |++....++.+.|.++... .|||.||+.-++-+.+.+.|+.||+|....+.-| ..+++.+-++|.
T Consensus 6 ~ae~ak~eLd~~~~~~~~lr~rfa~~a------~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD-~r~k~t~eg~v~ 78 (275)
T KOG0115|consen 6 LAEIAKRELDGRFPKGRSLRVRFAMHA------ELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVD-DRGKPTREGIVE 78 (275)
T ss_pred HHHHHHHhcCCCCCCCCceEEEeeccc------eEEEEecchhhhhHHHHHhhhhcCccchheeeec-ccccccccchhh
Confidence 3566666 8999999999999999863 8999999999999999999999999998777666 578889999999
Q ss_pred ecChHHHHHHHHHh
Q psy14193 187 FKAEEEELRKAFES 200 (239)
Q Consensus 187 F~~~e~a~~a~~~~ 200 (239)
|...-.|..|+...
T Consensus 79 ~~~k~~a~~a~rr~ 92 (275)
T KOG0115|consen 79 FAKKPNARKAARRC 92 (275)
T ss_pred hhcchhHHHHHHHh
Confidence 99988777777654
No 149
>KOG0151|consensus
Probab=97.40 E-value=0.00024 Score=64.95 Aligned_cols=80 Identities=15% Similarity=0.300 Sum_probs=62.7
Q ss_pred eeEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEEEe
Q psy14193 24 LKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRF 103 (239)
Q Consensus 24 ~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV~f 103 (239)
..+||++...+.... .|...|..||+|.++++ .+... +-...+.+-+|||.|
T Consensus 175 TNlyv~Nlnpsv~E~--------------~ll~tfGrfgPlasvKi--mwpRt------------EeEk~r~r~cgfvaf 226 (877)
T KOG0151|consen 175 TNLYVGNLNPSVDEN--------------FLLRTFGRFGPLASVKI--MWPRT------------EEEKRRERNCGFVAF 226 (877)
T ss_pred cceeeecCCccccHH--------------HHHHHhcccCcccceee--ecccc------------hhhhccccccceeee
Confidence 567777776665544 89999999999999995 22221 112234456899999
Q ss_pred CCHHHHHHHHH-hCCCccCCeeEEEeccC
Q psy14193 104 KNLESVEKALE-MNGHVIDEHTIRVDKAL 131 (239)
Q Consensus 104 ~~~e~a~~Ai~-~~~~~l~g~~i~v~~~~ 131 (239)
.+..+|++|++ |+|..+.+..+++.|..
T Consensus 227 mnR~D~era~k~lqg~iv~~~e~K~gWgk 255 (877)
T KOG0151|consen 227 MNRADAERALKELQGIIVMEYEMKLGWGK 255 (877)
T ss_pred hhhhhHHHHHHHhcceeeeeeeeeecccc
Confidence 99999999999 99999999999999984
No 150
>KOG2314|consensus
Probab=97.37 E-value=0.0006 Score=60.87 Aligned_cols=68 Identities=18% Similarity=0.309 Sum_probs=57.7
Q ss_pred CcEEEEcCCCCCCc------HHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEee
Q psy14193 138 SHSIFIGNIPFEAE------EEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDN 206 (239)
Q Consensus 138 ~~~l~V~nLp~~~t------~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~ 206 (239)
...|+|.|+|---. ..-|..+|+++|+++...++.++.+| .+||.|++|.+..+|..|+..+||+.+.
T Consensus 58 D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~gg-tkG~lf~E~~~~~~A~~aVK~l~G~~ld 131 (698)
T KOG2314|consen 58 DSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGG-TKGYLFVEYASMRDAKKAVKSLNGKRLD 131 (698)
T ss_pred ceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCC-eeeEEEEEecChhhHHHHHHhcccceec
Confidence 56899999995422 34567899999999999999897655 8999999999999999999999998764
No 151
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.35 E-value=0.00022 Score=59.87 Aligned_cols=63 Identities=16% Similarity=0.392 Sum_probs=46.5
Q ss_pred HHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceE--EEEeCCHHHHHHHHH-hCCCccCCeeEEEeccC
Q psy14193 55 TSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNA--YVRFKNLESVEKALE-MNGHVIDEHTIRVDKAL 131 (239)
Q Consensus 55 ~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~a--fV~f~~~e~a~~Ai~-~~~~~l~g~~i~v~~~~ 131 (239)
.++|.+||.|..|.+ -+. ...-....+.+ ||.|.+.|+|.+||. .+|..++|+-|+..+..
T Consensus 138 ~eyFGQyGkI~KIvv---Nkk-------------t~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr~lkatYGT 201 (480)
T COG5175 138 HEYFGQYGKIKKIVV---NKK-------------TSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGRVLKATYGT 201 (480)
T ss_pred hhhhhhccceeEEEe---ccc-------------ccccccccccceEEEEecchHHHHHHHHHhccccccCceEeeecCc
Confidence 479999999998863 111 11111222333 999999999999999 99999999999987765
Q ss_pred CC
Q psy14193 132 TT 133 (239)
Q Consensus 132 ~~ 133 (239)
.+
T Consensus 202 TK 203 (480)
T COG5175 202 TK 203 (480)
T ss_pred hH
Confidence 43
No 152
>KOG1995|consensus
Probab=97.30 E-value=0.00019 Score=60.64 Aligned_cols=83 Identities=19% Similarity=0.222 Sum_probs=72.2
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhcCCCee--------EEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEE
Q psy14193 138 SHSIFIGNIPFEAEEEELRKAFESCGEID--------NVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRL 209 (239)
Q Consensus 138 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~--------~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~ 209 (239)
..++||-+||..+++++|.++|.+||.|. .+.+-++..|+.+||-|.|.|.+...|+.|+.-+++..+.+..
T Consensus 66 ~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~gn~ 145 (351)
T KOG1995|consen 66 NETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCGNT 145 (351)
T ss_pred cccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccCCC
Confidence 56899999999999999999999999774 3567788899999999999999999888888889999999988
Q ss_pred EeeCCCCCCcc
Q psy14193 210 IRDQHTNIGKG 220 (239)
Q Consensus 210 l~~~~~~~~~G 220 (239)
|+|-.+.+..+
T Consensus 146 ikvs~a~~r~~ 156 (351)
T KOG1995|consen 146 IKVSLAERRTG 156 (351)
T ss_pred chhhhhhhccC
Confidence 88876655444
No 153
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.29 E-value=0.00079 Score=41.74 Aligned_cols=52 Identities=21% Similarity=0.393 Sum_probs=40.6
Q ss_pred cEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHH
Q psy14193 139 HSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKA 197 (239)
Q Consensus 139 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~ 197 (239)
+.|-|.+.|++.. +.+..+|..||+|..+.+.. ..-+.+|.|.+..+|.+|+
T Consensus 2 ~wI~V~Gf~~~~~-~~vl~~F~~fGeI~~~~~~~------~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLA-EEVLEHFASFGEIVDIYVPE------STNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHH-HHHHHHHHhcCCEEEEEcCC------CCcEEEEEECCHHHHHhhC
Confidence 4678888887766 45566899999999988762 2337999999999888774
No 154
>KOG4660|consensus
Probab=97.27 E-value=0.00012 Score=65.14 Aligned_cols=114 Identities=18% Similarity=0.223 Sum_probs=74.8
Q ss_pred HHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEEEeCCHHHHHHHHH-hCCCccCCeeEEEecc
Q psy14193 52 SSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALE-MNGHVIDEHTIRVDKA 130 (239)
Q Consensus 52 ~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV~f~~~e~a~~Ai~-~~~~~l~g~~i~v~~~ 130 (239)
++|+.+|+.||+|..|+. |....|..||+|.+..+|++|++ +++.++.|+.|.....
T Consensus 90 ~~L~~~f~~yGeir~ir~----------------------t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k~~~~ 147 (549)
T KOG4660|consen 90 DTLLRIFGAYGEIREIRE----------------------TPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIKRPGG 147 (549)
T ss_pred HHHHHHHHhhcchhhhhc----------------------ccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhcCCCc
Confidence 799999999999999772 44557899999999999999999 9999999998882211
Q ss_pred CCCCC-----------------------CCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEe
Q psy14193 131 LTTTK-----------------------SNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 187 (239)
Q Consensus 131 ~~~~~-----------------------~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F 187 (239)
..... .....++. .|++.....-++..+.-+|.+.. +- ++.-.-.-|+.|
T Consensus 148 ~~~~~~~~~~~~~~~~~~~p~a~s~pgg~~~~~~~g-~l~P~~s~~~~~~~~~~~~~~~~-~~-----~~~~~hq~~~~~ 220 (549)
T KOG4660|consen 148 ARRAMGLQSGTSFLNHFGSPLANSPPGGWPRGQLFG-MLSPTRSSILLEHISSVDGSSPG-RE-----TPLLNHQRFVEF 220 (549)
T ss_pred ccccchhcccchhhhhccchhhcCCCCCCcCCccee-eeccchhhhhhhcchhccCcccc-cc-----ccchhhhhhhhh
Confidence 11100 01223333 27777776666666666776554 21 121111345666
Q ss_pred cChHHHH
Q psy14193 188 KAEEEEL 194 (239)
Q Consensus 188 ~~~e~a~ 194 (239)
.+..+++
T Consensus 221 ~~~~s~a 227 (549)
T KOG4660|consen 221 ADNRSYA 227 (549)
T ss_pred ccccchh
Confidence 6655553
No 155
>KOG4307|consensus
Probab=97.26 E-value=0.00082 Score=61.44 Aligned_cols=75 Identities=20% Similarity=0.341 Sum_probs=65.4
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhcCCCee-EEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeC
Q psy14193 138 SHSIFIGNIPFEAEEEELRKAFESCGEID-NVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQ 213 (239)
Q Consensus 138 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~-~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~ 213 (239)
++.|-+.|+|++++-+||.++|..|-.+- +|.+.++ ..|.+.|-|-|-|++.++|..|...++++.+..|.+.+.
T Consensus 867 p~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~n-d~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~ 942 (944)
T KOG4307|consen 867 PRVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRN-DDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLR 942 (944)
T ss_pred CeEEEecCCCccccHHHHHHHhcccccCCCceeEeec-CCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEE
Confidence 45889999999999999999999996543 4555555 689999999999999999999999999999999998763
No 156
>KOG3152|consensus
Probab=97.25 E-value=0.00018 Score=58.22 Aligned_cols=73 Identities=19% Similarity=0.216 Sum_probs=61.0
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCC--------CCCce----EEEEEecChHHHHHHHHHhCCcE
Q psy14193 137 NSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHT--------NIGKG----FGYVNFKAEEEELRKAFESCGEI 204 (239)
Q Consensus 137 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~t--------g~~kg----~~fV~F~~~e~a~~a~~~~~g~~ 204 (239)
....||++++|+.+...-|+++|+.||.|-+|.+.+...+ |.+++ -|.|+|.+-..|.+.+..+||..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 3568999999999999999999999999999988765433 22222 26789999999999999999999
Q ss_pred eeEEE
Q psy14193 205 DNVRL 209 (239)
Q Consensus 205 ~~~r~ 209 (239)
++|+.
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 99875
No 157
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.15 E-value=0.0008 Score=41.69 Aligned_cols=42 Identities=24% Similarity=0.426 Sum_probs=33.7
Q ss_pred hhHHHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEEEeCCHHHHHHHH
Q psy14193 49 HALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKAL 113 (239)
Q Consensus 49 ~r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV~f~~~e~a~~Ai 113 (239)
...+++..+|..||+|.++.++ ...-+.||.|.++.+|++|+
T Consensus 12 ~~~~~vl~~F~~fGeI~~~~~~-----------------------~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 12 DLAEEVLEHFASFGEIVDIYVP-----------------------ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred hHHHHHHHHHHhcCCEEEEEcC-----------------------CCCcEEEEEECCHHHHHhhC
Confidence 4446889999999999998852 11248999999999999985
No 158
>KOG2193|consensus
Probab=97.02 E-value=3.3e-05 Score=66.48 Aligned_cols=112 Identities=19% Similarity=0.279 Sum_probs=92.6
Q ss_pred cceEEEEeCCHHHHHHHHH-hCCC-ccCCeeEEEeccCCCCCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEe-e
Q psy14193 96 NMNAYVRFKNLESVEKALE-MNGH-VIDEHTIRVDKALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLI-R 172 (239)
Q Consensus 96 ~G~afV~f~~~e~a~~Ai~-~~~~-~l~g~~i~v~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~-~ 172 (239)
.||+||.+.+...|.+|++ +++. .+.|+.+.+..+.++..+ .+.+-+.|+|+....+.+..+...||.+..|..+ .
T Consensus 37 ~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~kkqr-srk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt 115 (584)
T KOG2193|consen 37 SGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPKKQR-SRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNT 115 (584)
T ss_pred cceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhHHHH-hhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhcc
Confidence 4899999999999999999 7765 679999999988877654 4569999999999999999999999999988653 2
Q ss_pred cCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEee
Q psy14193 173 DQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRD 212 (239)
Q Consensus 173 ~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~ 212 (239)
++ ..-..-|.|.+.+.+..|+..++|..+....+++
T Consensus 116 ~~----etavvnvty~~~~~~~~ai~kl~g~Q~en~~~k~ 151 (584)
T KOG2193|consen 116 DS----ETAVVNVTYSAQQQHRQAIHKLNGPQLENQHLKV 151 (584)
T ss_pred ch----HHHHHHHHHHHHHHHHHHHHhhcchHhhhhhhhc
Confidence 32 2334567888899999999999998887766654
No 159
>KOG2202|consensus
Probab=96.96 E-value=0.00032 Score=56.83 Aligned_cols=64 Identities=27% Similarity=0.390 Sum_probs=51.2
Q ss_pred HHHHHhcc-cCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEEEeCCHHHHHHHHH-hCCCccCCeeEEEec
Q psy14193 52 SSVTSMFK-PYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALE-MNGHVIDEHTIRVDK 129 (239)
Q Consensus 52 ~~l~~~F~-~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV~f~~~e~a~~Ai~-~~~~~l~g~~i~v~~ 129 (239)
+++...|+ +||+|+++.+ -+.....-.|.+||.|..+++|++|++ +|+..+.|++|....
T Consensus 83 Ed~f~E~~~kygEiee~~V------------------c~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~ 144 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNV------------------CDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAEL 144 (260)
T ss_pred HHHHHHHHHHhhhhhhhhh------------------hcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeee
Confidence 77888787 9999998752 122223346899999999999999999 999999999999877
Q ss_pred cCCC
Q psy14193 130 ALTT 133 (239)
Q Consensus 130 ~~~~ 133 (239)
+.-.
T Consensus 145 ~pvT 148 (260)
T KOG2202|consen 145 SPVT 148 (260)
T ss_pred cCcC
Confidence 6433
No 160
>KOG1996|consensus
Probab=96.91 E-value=0.0029 Score=52.32 Aligned_cols=61 Identities=18% Similarity=0.287 Sum_probs=50.3
Q ss_pred HHHHHHHhhcCCCeeEEEEeecCCCCCCce-EEEEEecChHHHHHHHHHhCCcEeeEEEEee
Q psy14193 152 EEELRKAFESCGEIDNVRLIRDQHTNIGKG-FGYVNFKAEEEELRKAFESCGEIDNVRLIRD 212 (239)
Q Consensus 152 ~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg-~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~ 212 (239)
++++.+.+++||.|..|.|..++....... --||+|...++|.+|+..+||..++||.++-
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A 361 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSA 361 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeh
Confidence 477889999999999998877753322222 2699999999999999999999999999875
No 161
>KOG1855|consensus
Probab=96.91 E-value=0.00095 Score=57.76 Aligned_cols=77 Identities=19% Similarity=0.253 Sum_probs=57.8
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeec---CCC--CCC--------ceEEEEEecChHHHHHHHHHhCC
Q psy14193 136 SNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRD---QHT--NIG--------KGFGYVNFKAEEEELRKAFESCG 202 (239)
Q Consensus 136 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~---~~t--g~~--------kg~~fV~F~~~e~a~~a~~~~~g 202 (239)
.+.++|.+.|||.+-.-+-|.++|+.+|.|..|+|..- +.+ +.+ +-+|+|+|...+.|.+|...++.
T Consensus 229 l~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~ 308 (484)
T KOG1855|consen 229 LPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNP 308 (484)
T ss_pred cccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhch
Confidence 35899999999999888999999999999999998765 222 222 45789999999978887776654
Q ss_pred cEeeEEEEee
Q psy14193 203 EIDNVRLIRD 212 (239)
Q Consensus 203 ~~~~~r~l~~ 212 (239)
..-+-..|++
T Consensus 309 e~~wr~glkv 318 (484)
T KOG1855|consen 309 EQNWRMGLKV 318 (484)
T ss_pred hhhhhhcchh
Confidence 4333333333
No 162
>KOG4849|consensus
Probab=96.87 E-value=0.00074 Score=56.99 Aligned_cols=75 Identities=12% Similarity=0.230 Sum_probs=57.9
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhcCC--CeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEee
Q psy14193 138 SHSIFIGNIPFEAEEEELRKAFESCG--EIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRD 212 (239)
Q Consensus 138 ~~~l~V~nLp~~~t~~~l~~~F~~~G--~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~ 212 (239)
..++||+||-+.+|+++|.+....-| .+.++++..++.+|++||||.|...+.....+-...+--+.+.|..-.|
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V 156 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTV 156 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCee
Confidence 56899999999999999999998877 5777888888889999999999998888333334444445555544333
No 163
>KOG2314|consensus
Probab=96.86 E-value=0.0013 Score=58.91 Aligned_cols=60 Identities=23% Similarity=0.419 Sum_probs=48.6
Q ss_pred HHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEEEeCCHHHHHHHHH-hCCCccC-CeeEEEec
Q psy14193 52 SSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALE-MNGHVID-EHTIRVDK 129 (239)
Q Consensus 52 ~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV~f~~~e~a~~Ai~-~~~~~l~-g~~i~v~~ 129 (239)
.-|..+|+++|+|.... +|.++.|. ++||.|++|.+..+|+.|++ +||..++ .+...|..
T Consensus 79 ~vl~kvfsk~gk~vn~~---~P~~e~gg---------------tkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf~v~~ 140 (698)
T KOG2314|consen 79 KVLTKVFSKAGKIVNMY---YPIDEEGG---------------TKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTFFVRL 140 (698)
T ss_pred HHHHHHHHhhcccccee---eccCccCC---------------eeeEEEEEecChhhHHHHHHhcccceecccceEEeeh
Confidence 56888999999999887 55555543 56999999999999999999 9999884 55666643
No 164
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.82 E-value=0.0044 Score=46.42 Aligned_cols=57 Identities=26% Similarity=0.431 Sum_probs=46.3
Q ss_pred HHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEEEeCCHHHHHHHHHhCCCccCCeeEEEeccC
Q psy14193 52 SSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKAL 131 (239)
Q Consensus 52 ~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV~f~~~e~a~~Ai~~~~~~l~g~~i~v~~~~ 131 (239)
.+|.+.|..||+|.-+|+- . +--+|.|.+.++|.+|+.++|..+.|+.|.|..-.
T Consensus 51 ~~ll~~~~~~GevvLvRfv---~----------------------~~mwVTF~dg~sALaals~dg~~v~g~~l~i~LKt 105 (146)
T PF08952_consen 51 DELLQKFAQYGEVVLVRFV---G----------------------DTMWVTFRDGQSALAALSLDGIQVNGRTLKIRLKT 105 (146)
T ss_dssp HHHHHHHHCCS-ECEEEEE---T----------------------TCEEEEESSCHHHHHHHHGCCSEETTEEEEEEE--
T ss_pred HHHHHHHHhCCceEEEEEe---C----------------------CeEEEEECccHHHHHHHccCCcEECCEEEEEEeCC
Confidence 6899999999999888741 1 35899999999999999999999999999998765
Q ss_pred CC
Q psy14193 132 TT 133 (239)
Q Consensus 132 ~~ 133 (239)
+.
T Consensus 106 pd 107 (146)
T PF08952_consen 106 PD 107 (146)
T ss_dssp --
T ss_pred cc
Confidence 44
No 165
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.79 E-value=0.0038 Score=43.98 Aligned_cols=70 Identities=16% Similarity=0.152 Sum_probs=43.8
Q ss_pred HHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEEEeCCHHHHHHHHHhCCCccCCe-eEEEecc
Q psy14193 52 SSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEH-TIRVDKA 130 (239)
Q Consensus 52 ~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV~f~~~e~a~~Ai~~~~~~l~g~-~i~v~~~ 130 (239)
..+.++|++||.|.+..= ...+..|.. .........+-.|.|+++.+|.+|+..||..+.|. .+-|.+.
T Consensus 20 ~~Vl~~F~~~G~Ile~~~--~~~~~~~~~--------~~~~~~~~NWi~I~Y~~~~~A~rAL~~NG~i~~g~~mvGV~~~ 89 (100)
T PF05172_consen 20 NQVLRHFSSFGTILEHFE--VLRSSSGIN--------PYPIPSGGNWIHITYDNPLSAQRALQKNGTIFSGSLMVGVKPC 89 (100)
T ss_dssp HHHHHHHHCCS-EECEEG--GG------------------E-CCTTEEEEEESSHHHHHHHHTTTTEEETTCEEEEEEE-
T ss_pred HHHHHHHHhcceEEEeec--ccccccccc--------cccCCCCCCEEEEECCCHHHHHHHHHhCCeEEcCcEEEEEEEc
Confidence 589999999999987640 111100000 00011223588999999999999999999999875 5556665
Q ss_pred C
Q psy14193 131 L 131 (239)
Q Consensus 131 ~ 131 (239)
.
T Consensus 90 ~ 90 (100)
T PF05172_consen 90 D 90 (100)
T ss_dssp H
T ss_pred H
Confidence 3
No 166
>KOG1995|consensus
Probab=96.78 E-value=0.0015 Score=55.33 Aligned_cols=74 Identities=18% Similarity=0.209 Sum_probs=61.5
Q ss_pred HHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEEEeCCHHHHHHHHH-hCCCccCCeeEEEecc
Q psy14193 52 SSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALE-MNGHVIDEHTIRVDKA 130 (239)
Q Consensus 52 ~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV~f~~~e~a~~Ai~-~~~~~l~g~~i~v~~~ 130 (239)
++|.++|.++|.|.. ....++|+ ..+-+++.|++.+|-|.|.|.+...|..|+. +++..+.+..|.|..+
T Consensus 81 ~~~~~~f~qcg~ikr-------nK~t~kPk--i~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~gn~ikvs~a 151 (351)
T KOG1995|consen 81 NDNADFFLQCGVIKR-------NKRTGKPK--IKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCGNTIKVSLA 151 (351)
T ss_pred HHHHHHHhhcceecc-------CCCCCCcc--hhccccccccCcCCceeeeecChhhhhhhhhhhccccccCCCchhhhh
Confidence 599999999998753 22333454 2466788999999999999999999999999 9999999999999888
Q ss_pred CCCC
Q psy14193 131 LTTT 134 (239)
Q Consensus 131 ~~~~ 134 (239)
....
T Consensus 152 ~~r~ 155 (351)
T KOG1995|consen 152 ERRT 155 (351)
T ss_pred hhcc
Confidence 7664
No 167
>KOG4210|consensus
Probab=96.62 E-value=0.0008 Score=56.64 Aligned_cols=101 Identities=26% Similarity=0.302 Sum_probs=80.8
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHH------------------
Q psy14193 137 NSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAF------------------ 198 (239)
Q Consensus 137 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~------------------ 198 (239)
..++.|++++...+.+.+...++..+|......+........++|++++.|...+.+..++.
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~ 166 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNT 166 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCcccc
Confidence 36789999999999999899999999988877776666678899999999999986655542
Q ss_pred ----------------------------------------HhCCcEeeEEEEeeCCCCCCcceEEEEeCChHHHHhhhh
Q psy14193 199 ----------------------------------------ESCGEIDNVRLIRDQHTNIGKGFGYVNFKVSFTTLSSIF 237 (239)
Q Consensus 199 ----------------------------------------~~~g~~~~~r~l~~~~~~~~~G~~fv~f~~~~~a~~a~~ 237 (239)
.-+|.+...+....+.++.++|||||.|.+...+.+|+.
T Consensus 167 ~~~~~~~n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~ 245 (285)
T KOG4210|consen 167 RRGLRPKNKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALN 245 (285)
T ss_pred cccccccchhcccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhh
Confidence 123344455555566788899999999999999999886
No 168
>KOG4676|consensus
Probab=96.58 E-value=0.0018 Score=55.52 Aligned_cols=91 Identities=19% Similarity=0.237 Sum_probs=66.7
Q ss_pred cEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCC---CCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeCCC
Q psy14193 139 HSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQH---TNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHT 215 (239)
Q Consensus 139 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~---tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~~~ 215 (239)
..|.|.||.+++|.++++.+|...|.|..+++..... -......|||.|.+.. ...++.-|...++-++.|.|...
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~-sv~vaQhLtntvfvdraliv~p~ 86 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQ-SVTVAQHLTNTVFVDRALIVRPY 86 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCc-ceeHHhhhccceeeeeeEEEEec
Confidence 3789999999999999999999999999998876432 1234568999999998 55566666666666666655422
Q ss_pred -C--CCcceEEEEeCChH
Q psy14193 216 -N--IGKGFGYVNFKVSF 230 (239)
Q Consensus 216 -~--~~~G~~fv~f~~~~ 230 (239)
. .+--|||+.|.+..
T Consensus 87 ~~~~~p~r~af~~l~~~n 104 (479)
T KOG4676|consen 87 GDEVIPDRFAFVELADQN 104 (479)
T ss_pred CCCCCccHHHHHhcCccc
Confidence 2 34556777776654
No 169
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.47 E-value=0.01 Score=41.87 Aligned_cols=71 Identities=15% Similarity=0.212 Sum_probs=45.9
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEE-EeecC------CCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEE
Q psy14193 138 SHSIFIGNIPFEAEEEELRKAFESCGEIDNVR-LIRDQ------HTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLI 210 (239)
Q Consensus 138 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~-i~~~~------~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l 210 (239)
...|.|-+.|+. ....+.+.|++||+|.+.. +.++. .......+..|.|+++.+|.+| +..||.++++..+
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rA-L~~NG~i~~g~~m 83 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRA-LQKNGTIFSGSLM 83 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHH-HTTTTEEETTCEE
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHH-HHhCCeEEcCcEE
Confidence 456888899987 5678889999999998764 11110 0111345899999999977766 5678888877554
No 170
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=96.44 E-value=0.0078 Score=42.15 Aligned_cols=48 Identities=15% Similarity=0.125 Sum_probs=38.1
Q ss_pred ecccccCCCCcceEEEEeCCHHHHHHHHH-hCCCccC----CeeEEEeccCCC
Q psy14193 86 KMNKVHEKRTNMNAYVRFKNLESVEKALE-MNGHVID----EHTIRVDKALTT 133 (239)
Q Consensus 86 ~~~~~~t~~~~G~afV~f~~~e~a~~Ai~-~~~~~l~----g~~i~v~~~~~~ 133 (239)
+..|..++.+.|||||.|.+++.|.+-.+ ++|..+. .+...|.+|.-+
T Consensus 35 LPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i~yAriQ 87 (97)
T PF04059_consen 35 LPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEISYARIQ 87 (97)
T ss_pred eeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEEehhHhh
Confidence 34466778899999999999999999999 9988773 566666666543
No 171
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.15 E-value=0.035 Score=35.39 Aligned_cols=54 Identities=20% Similarity=0.265 Sum_probs=44.2
Q ss_pred cEEEEcCCCCCCcHHHHHHHhhcC---CCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHh
Q psy14193 139 HSIFIGNIPFEAEEEELRKAFESC---GEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFES 200 (239)
Q Consensus 139 ~~l~V~nLp~~~t~~~l~~~F~~~---G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~ 200 (239)
..|+|.++. +++.++|+.+|..| ....++.++-|. -|-|.|.+++.|.+|+..+
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 479999986 68889999999998 235678888774 4899999999999998753
No 172
>KOG1996|consensus
Probab=96.13 E-value=0.013 Score=48.51 Aligned_cols=64 Identities=20% Similarity=0.264 Sum_probs=51.1
Q ss_pred HHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEEEeCCHHHHHHHHH-hCCCccCCeeEEEecc
Q psy14193 52 SSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALE-MNGHVIDEHTIRVDKA 130 (239)
Q Consensus 52 ~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV~f~~~e~a~~Ai~-~~~~~l~g~~i~v~~~ 130 (239)
+++++-.++||.|..|-+-.++..+...-. --||+|...++|.+|+- +||..++|+.+..++.
T Consensus 301 de~keEceKyg~V~~viifeip~~p~deav----------------RiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fy 364 (378)
T KOG1996|consen 301 DETKEECEKYGKVGNVIIFEIPSQPEDEAV----------------RIFVEFERVESAIKAVVDLNGRYFGGRVVSACFY 364 (378)
T ss_pred HHHHHHHHhhcceeeEEEEecCCCccchhh----------------eeeeeeccHHHHHHHHHhcCCceecceeeeheec
Confidence 778889999999999886555444433221 27999999999999999 9999999999887665
Q ss_pred C
Q psy14193 131 L 131 (239)
Q Consensus 131 ~ 131 (239)
.
T Consensus 365 n 365 (378)
T KOG1996|consen 365 N 365 (378)
T ss_pred c
Confidence 3
No 173
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.06 E-value=0.058 Score=36.41 Aligned_cols=54 Identities=19% Similarity=0.296 Sum_probs=38.0
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHh
Q psy14193 138 SHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFES 200 (239)
Q Consensus 138 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~ 200 (239)
....||+ .|..+...||.++|++||.|. |.++-|- -|||...+.+.+..+...+
T Consensus 9 dHVFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~dT-------SAfV~l~~r~~~~~v~~~~ 62 (87)
T PF08675_consen 9 DHVFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWINDT-------SAFVALHNRDQAKVVMNTL 62 (87)
T ss_dssp CCEEEEE---TT--HHHHHHHCCCCCCEE-EEEECTT-------EEEEEECCCHHHHHHHHHH
T ss_pred ceEEEEe-CchHhhhhhHHHHhccCCcEE-EEEEcCC-------cEEEEeecHHHHHHHHHHh
Confidence 4456666 999999999999999999975 5555442 5999999999666555544
No 174
>KOG0112|consensus
Probab=95.81 E-value=0.0023 Score=60.21 Aligned_cols=100 Identities=17% Similarity=0.390 Sum_probs=74.3
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeC----
Q psy14193 138 SHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQ---- 213 (239)
Q Consensus 138 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~---- 213 (239)
..+||++||+..+++.+|+..|..+|.+.+|.+-.-. -+.-.-|+|+.|.+...+-+|...+.|..++.-.++..
T Consensus 372 trTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~-~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG~~ 450 (975)
T KOG0112|consen 372 TRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPH-IKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLGQP 450 (975)
T ss_pred hhhhhhcCcccchhhhhhhhhhhhhccccccccccCC-CCcccchhhhhhhccccCcccchhhcCCccccCccccccccc
Confidence 7899999999999999999999999999999886552 23334589999998887777777666655532222111
Q ss_pred --------C---------------------------CCCCcceEEEEeCChHHHHhhhhc
Q psy14193 214 --------H---------------------------TNIGKGFGYVNFKVSFTTLSSIFS 238 (239)
Q Consensus 214 --------~---------------------------~~~~~G~~fv~f~~~~~a~~a~~~ 238 (239)
+ =..+.-|+||.|++...|++|+-+
T Consensus 451 kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hgq~yayi~yes~~~aq~a~~~ 510 (975)
T KOG0112|consen 451 KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHGQPYAYIQYESPPAAQAATHD 510 (975)
T ss_pred ccccceeeccCCCCCCChHHHHHHHhhccCcceeeecccCCcceeeecccCccchhhHHH
Confidence 0 112356999999999999988753
No 175
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=95.74 E-value=0.044 Score=39.03 Aligned_cols=42 Identities=38% Similarity=0.688 Sum_probs=27.2
Q ss_pred HHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEEEeCCHHHHHHHHH-hC
Q psy14193 52 SSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALE-MN 116 (239)
Q Consensus 52 ~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV~f~~~e~a~~Ai~-~~ 116 (239)
++|++.|++||+|.-|.+ ... .-.|||.|.++++|+.|++ +.
T Consensus 16 e~iK~~f~~~g~V~yVD~---~~G--------------------~~~g~VRf~~~~~A~~a~~~~~ 58 (105)
T PF08777_consen 16 EDIKEAFSQFGEVAYVDF---SRG--------------------DTEGYVRFKTPEAAQKALEKLK 58 (105)
T ss_dssp HHHHHHT-SS--EEEEE-----TT---------------------SEEEEEESS---HHHHHHHHH
T ss_pred HHHHHHHHhcCCcceEEe---cCC--------------------CCEEEEEECCcchHHHHHHHHH
Confidence 599999999998887774 211 1269999999999999998 44
No 176
>KOG2135|consensus
Probab=95.48 E-value=0.0075 Score=53.00 Aligned_cols=60 Identities=20% Similarity=0.382 Sum_probs=52.1
Q ss_pred HHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEEEeCCHHHHHHHHHhCCCccCCeeEEEeccC
Q psy14193 52 SSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKAL 131 (239)
Q Consensus 52 ~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV~f~~~e~a~~Ai~~~~~~l~g~~i~v~~~~ 131 (239)
.+|..+|.+||+|..|++.+ +.-.|.|+|.+..+|-.|...++..|.++.|+|.|..
T Consensus 388 a~ln~hfA~fG~i~n~qv~~-----------------------~~~~a~vTF~t~aeag~a~~s~~avlnnr~iKl~whn 444 (526)
T KOG2135|consen 388 ADLNPHFAQFGEIENIQVDY-----------------------SSLHAVVTFKTRAEAGEAYASHGAVLNNRFIKLFWHN 444 (526)
T ss_pred hhhhhhhhhcCccccccccC-----------------------chhhheeeeeccccccchhccccceecCceeEEEEec
Confidence 89999999999999998521 1125999999999999998899999999999999998
Q ss_pred CCC
Q psy14193 132 TTT 134 (239)
Q Consensus 132 ~~~ 134 (239)
+..
T Consensus 445 ps~ 447 (526)
T KOG2135|consen 445 PSP 447 (526)
T ss_pred CCc
Confidence 865
No 177
>KOG2416|consensus
Probab=95.37 E-value=0.032 Score=50.54 Aligned_cols=86 Identities=14% Similarity=0.054 Sum_probs=63.7
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhh-cCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeCCC
Q psy14193 137 NSHSIFIGNIPFEAEEEELRKAFE-SCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHT 215 (239)
Q Consensus 137 ~~~~l~V~nLp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~~~ 215 (239)
.++.|||.||-...|.-+|+.++. .+|.|...+| | +-+..|||.|.+.++|......|||..+-.
T Consensus 443 ~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~Wm--D----kIKShCyV~yss~eEA~atr~AlhnV~WP~-------- 508 (718)
T KOG2416|consen 443 PSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWM--D----KIKSHCYVSYSSVEEAAATREALHNVQWPP-------- 508 (718)
T ss_pred ccceEeeecccccchHHHHHHHHhhccCchHHHHH--H----HhhcceeEecccHHHHHHHHHHHhccccCC--------
Confidence 488999999999999999999999 5677776632 1 235689999999999999999999987522
Q ss_pred CCCcceEEEEeCChHHHHhhhh
Q psy14193 216 NIGKGFGYVNFKVSFTTLSSIF 237 (239)
Q Consensus 216 ~~~~G~~fv~f~~~~~a~~a~~ 237 (239)
.+--+=-+.|..++.-..+++
T Consensus 509 -sNPK~L~adf~~~deld~hr~ 529 (718)
T KOG2416|consen 509 -SNPKHLIADFVRADELDKHRN 529 (718)
T ss_pred -CCCceeEeeecchhHHHHHhc
Confidence 112244556666665554443
No 178
>KOG2202|consensus
Probab=95.12 E-value=0.0087 Score=48.65 Aligned_cols=60 Identities=23% Similarity=0.289 Sum_probs=47.6
Q ss_pred HHHHHHhh-cCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeC
Q psy14193 153 EELRKAFE-SCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQ 213 (239)
Q Consensus 153 ~~l~~~F~-~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~ 213 (239)
+++...|+ +||+|..+.+-.+. .-.-.|-+||.|..+++|..|+..+||.++.|+.+...
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl-~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae 143 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNL-GDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAE 143 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhccc-chhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceee
Confidence 44555555 79999988665442 33457889999999999999999999999999998754
No 179
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=95.05 E-value=0.051 Score=42.49 Aligned_cols=68 Identities=18% Similarity=0.162 Sum_probs=43.4
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhc-CCCe---eEEEEeecCCC-CC-CceEEEEEecChHHHHHHHHHhCCcEe
Q psy14193 138 SHSIFIGNIPFEAEEEELRKAFES-CGEI---DNVRLIRDQHT-NI-GKGFGYVNFKAEEEELRKAFESCGEID 205 (239)
Q Consensus 138 ~~~l~V~nLp~~~t~~~l~~~F~~-~G~i---~~v~i~~~~~t-g~-~kg~~fV~F~~~e~a~~a~~~~~g~~~ 205 (239)
...|.|++||+++|++++.+.+++ +++- .++.-...... .. .-.-|||.|.+.++...-...++|..+
T Consensus 7 ~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F 80 (176)
T PF03467_consen 7 GTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVF 80 (176)
T ss_dssp --EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEE
T ss_pred CceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEE
Confidence 568999999999999999998887 6665 33331122111 11 234599999999977766777888765
No 180
>KOG1855|consensus
Probab=95.05 E-value=0.023 Score=49.45 Aligned_cols=59 Identities=25% Similarity=0.439 Sum_probs=38.9
Q ss_pred HHHHHhcccCCceeEEEEeec---ccccCCCccceeeecccccCCCCcceEEEEeCCHHHHHHHHH-hCC
Q psy14193 52 SSVTSMFKPYGEVETVRFRSV---PVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALE-MNG 117 (239)
Q Consensus 52 ~~l~~~F~~~G~I~~v~l~~~---~~~~~~~~~~~~~~~~~~~t~~~~G~afV~f~~~e~a~~Ai~-~~~ 117 (239)
+.|.++|+.+|.|.+|++-.- +.+..+.++ ..---..+-+|+|+|...+.|.+|.+ ++.
T Consensus 246 enl~kiFg~~G~IksIRIckPgaip~d~r~~~~-------~~~~~~tk~~AlvEye~~~~A~KA~e~~~~ 308 (484)
T KOG1855|consen 246 ENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPK-------KYFELQTKECALVEYEEVEAARKARELLNP 308 (484)
T ss_pred HHHHHHhhcccceeeeeecCCCCCCcccccCCc-------cchhhhhhhhhhhhhhhhHHHHHHHHhhch
Confidence 799999999999999994111 111111111 01111124579999999999999999 643
No 181
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=94.93 E-value=0.047 Score=37.44 Aligned_cols=62 Identities=21% Similarity=0.363 Sum_probs=43.9
Q ss_pred EEEEeCCHHHHHHHHHhC--CCccCCeeEEEe--ccCCCCC--------CCCcEEEEcCCCCCCcHHHHHHHhh
Q psy14193 99 AYVRFKNLESVEKALEMN--GHVIDEHTIRVD--KALTTTK--------SNSHSIFIGNIPFEAEEEELRKAFE 160 (239)
Q Consensus 99 afV~f~~~e~a~~Ai~~~--~~~l~g~~i~v~--~~~~~~~--------~~~~~l~V~nLp~~~t~~~l~~~F~ 160 (239)
|.|+|.+++-|++.+++. ...+++..+.|. +...... ...++|-|.|||....+++|++..+
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~~~~k~qv~~~vs~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLGHLQKFQVFSGVSKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecCCceEEEEEEcccCCEEEEeCCCCCCChhhheeeEE
Confidence 679999999999999844 344566555553 3322221 1378999999999999999986543
No 182
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=94.68 E-value=0.11 Score=38.96 Aligned_cols=54 Identities=28% Similarity=0.373 Sum_probs=43.0
Q ss_pred HHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeCCC
Q psy14193 153 EELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHT 215 (239)
Q Consensus 153 ~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~~~ 215 (239)
.+|.+.|..||++.-+|+..+ --.|.|.+.+.|. ++..++|..+.|+.|+++..
T Consensus 51 ~~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sAL-aals~dg~~v~g~~l~i~LK 104 (146)
T PF08952_consen 51 DELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSAL-AALSLDGIQVNGRTLKIRLK 104 (146)
T ss_dssp HHHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHH-HHHHGCCSEETTEEEEEEE-
T ss_pred HHHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHH-HHHccCCcEECCEEEEEEeC
Confidence 467788899999998888754 3689999999555 77899999999999988644
No 183
>KOG4285|consensus
Probab=94.63 E-value=0.087 Score=43.99 Aligned_cols=59 Identities=27% Similarity=0.310 Sum_probs=46.8
Q ss_pred HHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEEEeCCHHHHHHHHHhCCCccCC-eeEEEecc
Q psy14193 52 SSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDE-HTIRVDKA 130 (239)
Q Consensus 52 ~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV~f~~~e~a~~Ai~~~~~~l~g-~~i~v~~~ 130 (239)
..|..+|++||.|.++.. ...--+-+|.|.+.-+|++|+..||+.|+| -.|-|.++
T Consensus 211 s~vL~~F~~cG~Vvkhv~-----------------------~~ngNwMhirYssr~~A~KALskng~ii~g~vmiGVkpC 267 (350)
T KOG4285|consen 211 SIVLNLFSRCGEVVKHVT-----------------------PSNGNWMHIRYSSRTHAQKALSKNGTIIDGDVMIGVKPC 267 (350)
T ss_pred hHHHHHHHhhCeeeeeec-----------------------CCCCceEEEEecchhHHHHhhhhcCeeeccceEEeeeec
Confidence 789999999999998762 112238899999999999999999999965 56667765
Q ss_pred CCC
Q psy14193 131 LTT 133 (239)
Q Consensus 131 ~~~ 133 (239)
..+
T Consensus 268 tDk 270 (350)
T KOG4285|consen 268 TDK 270 (350)
T ss_pred CCH
Confidence 544
No 184
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=94.12 E-value=0.22 Score=33.63 Aligned_cols=46 Identities=20% Similarity=0.505 Sum_probs=34.0
Q ss_pred hhchhHHHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEEEeCCHHHHHHHHH-hC
Q psy14193 46 SKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALE-MN 116 (239)
Q Consensus 46 ~k~~r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV~f~~~e~a~~Ai~-~~ 116 (239)
++..+..||.++|+.||.|. |.+.+ -.-|||...+.+.|..++. +.
T Consensus 17 PkeWK~~DI~qlFspfG~I~-VsWi~------------------------dTSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 17 PKEWKTSDIYQLFSPFGQIY-VSWIN------------------------DTSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp -TT--HHHHHHHCCCCCCEE-EEEEC------------------------TTEEEEEECCCHHHHHHHHHHT
T ss_pred chHhhhhhHHHHhccCCcEE-EEEEc------------------------CCcEEEEeecHHHHHHHHHHhc
Confidence 45566689999999999986 44311 1369999999999999988 65
No 185
>KOG2591|consensus
Probab=93.95 E-value=0.3 Score=44.14 Aligned_cols=93 Identities=14% Similarity=0.229 Sum_probs=71.2
Q ss_pred HHHHHHHH-hCCCccCCeeEEEeccCCCCCCCCcEEEEcCCCCCCcHHHHHHHhhc--CCCeeEEEEeecCCCCCCceEE
Q psy14193 107 ESVEKALE-MNGHVIDEHTIRVDKALTTTKSNSHSIFIGNIPFEAEEEELRKAFES--CGEIDNVRLIRDQHTNIGKGFG 183 (239)
Q Consensus 107 e~a~~Ai~-~~~~~l~g~~i~v~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~--~G~i~~v~i~~~~~tg~~kg~~ 183 (239)
+-...++. ..+..++.+-.+|.+...+ |.+.++.||..+-.|+++.+|+. |..+.+|.+-.+. -=
T Consensus 148 dLI~Evlresp~VqvDekgekVrp~~kR-----cIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~-------nW 215 (684)
T KOG2591|consen 148 DLIVEVLRESPNVQVDEKGEKVRPNHKR-----CIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND-------NW 215 (684)
T ss_pred HHHHHHHhcCCCceeccCccccccCcce-----eEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-------ce
Confidence 33455555 6677778887877766544 78899999999999999999975 8888999876552 14
Q ss_pred EEEecChHHHHHHHH-------HhCCcEeeEEEEe
Q psy14193 184 YVNFKAEEEELRKAF-------ESCGEIDNVRLIR 211 (239)
Q Consensus 184 fV~F~~~e~a~~a~~-------~~~g~~~~~r~l~ 211 (239)
||.|+++.||+.|.. .+.|+.+..|+-.
T Consensus 216 yITfesd~DAQqAykylreevk~fqgKpImARIKa 250 (684)
T KOG2591|consen 216 YITFESDTDAQQAYKYLREEVKTFQGKPIMARIKA 250 (684)
T ss_pred EEEeecchhHHHHHHHHHHHHHhhcCcchhhhhhh
Confidence 899999999998864 4677777666544
No 186
>KOG3152|consensus
Probab=93.50 E-value=0.015 Score=47.31 Aligned_cols=68 Identities=21% Similarity=0.297 Sum_probs=45.8
Q ss_pred HHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEEEeCCHHHHHHHHH-hCCCccCCee
Q psy14193 52 SSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALE-MNGHVIDEHT 124 (239)
Q Consensus 52 ~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV~f~~~e~a~~Ai~-~~~~~l~g~~ 124 (239)
..|+++|+.||.|-.|-| -+-+ -++..+......+.+...--|+|+|.+...|....+ ||+..|+|+.
T Consensus 89 ~rlReil~~yGeVGRvyl--qpE~---~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~Iggkk 157 (278)
T KOG3152|consen 89 VRLREILSQYGEVGRVYL--QPED---DSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPIGGKK 157 (278)
T ss_pred HHHHHHHHhccccceEEe--cchh---hHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCccCCCC
Confidence 689999999999999875 1211 111111111122223333458999999999999988 9999999874
No 187
>KOG2068|consensus
Probab=92.89 E-value=0.042 Score=46.51 Aligned_cols=75 Identities=19% Similarity=0.395 Sum_probs=56.7
Q ss_pred CcEEEEcCCCCCCcHHHH---HHHhhcCCCeeEEEEeecCC--CCC-CceEEEEEecChHHHHHHHHHhCCcEeeEEEEe
Q psy14193 138 SHSIFIGNIPFEAEEEEL---RKAFESCGEIDNVRLIRDQH--TNI-GKGFGYVNFKAEEEELRKAFESCGEIDNVRLIR 211 (239)
Q Consensus 138 ~~~l~V~nLp~~~t~~~l---~~~F~~~G~i~~v~i~~~~~--tg~-~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~ 211 (239)
..-+||-+||.....+.+ .+.|.+||.|..+.+-+++. .+. .---++|.|...++|.+++...+|.+..++.++
T Consensus 77 knlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lk 156 (327)
T KOG2068|consen 77 KNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALK 156 (327)
T ss_pred hhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhH
Confidence 356788899877655444 37889999999998877652 111 111279999999999999999999999998854
Q ss_pred e
Q psy14193 212 D 212 (239)
Q Consensus 212 ~ 212 (239)
-
T Consensus 157 a 157 (327)
T KOG2068|consen 157 A 157 (327)
T ss_pred H
Confidence 4
No 188
>KOG2193|consensus
Probab=92.74 E-value=0.12 Score=45.11 Aligned_cols=69 Identities=12% Similarity=0.236 Sum_probs=50.0
Q ss_pred cEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcE-eeEEEEeeC
Q psy14193 139 HSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEI-DNVRLIRDQ 213 (239)
Q Consensus 139 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~-~~~r~l~~~ 213 (239)
..+|++||.+..+..+|..+|...---.+-.++. ..||+||.+.+...|.+++..++|++ +.|..+.++
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~------k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~ 71 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV------KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVE 71 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceee------ecceeeccCCchhhhhhhHHhhchhhhhcCceeecc
Confidence 3689999999999999999997641111111111 25799999999999999999998875 345555443
No 189
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=92.23 E-value=2.1 Score=30.72 Aligned_cols=65 Identities=17% Similarity=0.146 Sum_probs=46.0
Q ss_pred cEEEEcCCCCCCcHHHHHHHhhcCC-CeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEe
Q psy14193 139 HSIFIGNIPFEAEEEELRKAFESCG-EIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEID 205 (239)
Q Consensus 139 ~~l~V~nLp~~~t~~~l~~~F~~~G-~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~ 205 (239)
..+.+...|.-++.++|..+.+++- .|..+++++|. ..++=.+.+.|.+.++|..-....||+.+
T Consensus 14 ~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~--~pnrymVLikF~~~~~Ad~Fy~~fNGk~F 79 (110)
T PF07576_consen 14 TLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDG--TPNRYMVLIKFRDQESADEFYEEFNGKPF 79 (110)
T ss_pred eEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCC--CCceEEEEEEECCHHHHHHHHHHhCCCcc
Confidence 3444444555556677776666654 57788998873 22455689999999988888889999865
No 190
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=92.14 E-value=0.49 Score=35.36 Aligned_cols=57 Identities=19% Similarity=0.204 Sum_probs=42.7
Q ss_pred HHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEEEeCCHHHHHHHHHhCCCccCCeeEEEeccC
Q psy14193 52 SSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKAL 131 (239)
Q Consensus 52 ~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV~f~~~e~a~~Ai~~~~~~l~g~~i~v~~~~ 131 (239)
+.+....+.||+|.+|.+ . | +--|.|.|.+-.+|.+|+..-+....|..+.+.|..
T Consensus 105 ~sV~~~Ls~fGpI~SVT~---c-------------------G--rqsavVvF~d~~SAC~Av~Af~s~~pgtm~qCsWqq 160 (166)
T PF15023_consen 105 KSVIQRLSVFGPIQSVTL---C-------------------G--RQSAVVVFKDITSACKAVSAFQSRAPGTMFQCSWQQ 160 (166)
T ss_pred HHHHHHHHhcCCcceeee---c-------------------C--CceEEEEehhhHHHHHHHHhhcCCCCCceEEeeccc
Confidence 345556789999999984 1 1 126999999999999999933346778888888765
Q ss_pred C
Q psy14193 132 T 132 (239)
Q Consensus 132 ~ 132 (239)
+
T Consensus 161 r 161 (166)
T PF15023_consen 161 R 161 (166)
T ss_pred c
Confidence 3
No 191
>KOG2068|consensus
Probab=90.34 E-value=0.17 Score=42.94 Aligned_cols=65 Identities=15% Similarity=0.340 Sum_probs=45.6
Q ss_pred HhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEEEeCCHHHHHHHHH-hCCCccCCeeEEEeccCCCC
Q psy14193 56 SMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALE-MNGHVIDEHTIRVDKALTTT 134 (239)
Q Consensus 56 ~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV~f~~~e~a~~Ai~-~~~~~l~g~~i~v~~~~~~~ 134 (239)
++|.+||.|.+|.. ..++. .+. ..+.+ .-++|.|...++|..||. .+|..++|+.++.....++.
T Consensus 99 eyfgqygki~ki~~---~~~~S-~~s---------~~~~~-~s~yITy~~~eda~rci~~v~g~~~dg~~lka~~gttky 164 (327)
T KOG2068|consen 99 EYFGQYGKINKIVK---NKDPS-SSS---------SSGGT-CSVYITYEEEEDADRCIDDVDGFVDDGRALKASLGTTKY 164 (327)
T ss_pred ccccccccceEEee---cCCcc-ccc---------CCCCC-CcccccccchHhhhhHHHHhhhHHhhhhhhHHhhCCCcc
Confidence 48999999999873 22111 000 01111 138999999999999999 99999999987776665543
No 192
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=90.02 E-value=1 Score=35.43 Aligned_cols=59 Identities=19% Similarity=0.288 Sum_probs=41.9
Q ss_pred HHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEEEeCCHHHHHHHHH-hC--CCccCCeeEEEe
Q psy14193 52 SSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALE-MN--GHVIDEHTIRVD 128 (239)
Q Consensus 52 ~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV~f~~~e~a~~Ai~-~~--~~~l~g~~i~v~ 128 (239)
+.|+++|..|+.+.+... + ++-+=..|.|.+.++|..|.. ++ +..+.|..+++.
T Consensus 10 ~~l~~l~~~~~~~~~~~~--L---------------------~sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~y 66 (184)
T PF04847_consen 10 AELEELFSTYDPPVQFSP--L---------------------KSFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVY 66 (184)
T ss_dssp HHHHHHHHTT-SS-EEEE--E---------------------TTTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE
T ss_pred HHHHHHHHhcCCceEEEE--c---------------------CCCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEE
Confidence 589999999999887763 1 112348999999999999999 88 899999999998
Q ss_pred ccCCC
Q psy14193 129 KALTT 133 (239)
Q Consensus 129 ~~~~~ 133 (239)
++...
T Consensus 67 f~~~~ 71 (184)
T PF04847_consen 67 FGQPT 71 (184)
T ss_dssp ----S
T ss_pred Ecccc
Confidence 87544
No 193
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=87.32 E-value=0.76 Score=34.53 Aligned_cols=76 Identities=16% Similarity=0.107 Sum_probs=59.8
Q ss_pred cceEEEEeCCHHHHHHHHHhCCCccCCeeEEEeccCCCCCCC-------CcEEEEcCCCCC-CcHHHHHHHhhcCCCeeE
Q psy14193 96 NMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKSN-------SHSIFIGNIPFE-AEEEELRKAFESCGEIDN 167 (239)
Q Consensus 96 ~G~afV~f~~~e~a~~Ai~~~~~~l~g~~i~v~~~~~~~~~~-------~~~l~V~nLp~~-~t~~~l~~~F~~~G~i~~ 167 (239)
.|+..+.|.+++++.+++......+.+..+.+..-.+..... ..-|.+.|||.. .+++-++.+-+.+|++..
T Consensus 55 ~~~fl~~F~~~~d~~~vl~~~p~~~~~~~~~l~~W~~~~~~~~~~~~~~~vWVri~glP~~~~~~~~~~~i~~~iG~~i~ 134 (153)
T PF14111_consen 55 DNLFLFQFESEEDRQRVLKGGPWNFNGHFLILQRWSPDFNPSEVKFEHIPVWVRIYGLPLHLWSEEILKAIGSKIGEPIE 134 (153)
T ss_pred CCeEEEEEEeccceeEEEecccccccccchhhhhhcccccccccceeccchhhhhccCCHHHhhhHHHHHHHHhcCCeEE
Confidence 368999999999999999877777888888887766443221 344777899987 588899999999999988
Q ss_pred EEEe
Q psy14193 168 VRLI 171 (239)
Q Consensus 168 v~i~ 171 (239)
+...
T Consensus 135 vD~~ 138 (153)
T PF14111_consen 135 VDEN 138 (153)
T ss_pred EEcC
Confidence 8654
No 194
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=86.71 E-value=5.8 Score=29.79 Aligned_cols=74 Identities=14% Similarity=0.134 Sum_probs=49.8
Q ss_pred CCCCCCcEEEEcCCCCCCc-HHH---HHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEE
Q psy14193 133 TTKSNSHSIFIGNIPFEAE-EEE---LRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVR 208 (239)
Q Consensus 133 ~~~~~~~~l~V~nLp~~~t-~~~---l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r 208 (239)
..+.+-.+|.|.=|..++. .+| +...++.||+|.++... | +.-|.|.|++..+|.+|+.+.... .-|+
T Consensus 81 ~kepPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c-----G--rqsavVvF~d~~SAC~Av~Af~s~-~pgt 152 (166)
T PF15023_consen 81 TKEPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC-----G--RQSAVVVFKDITSACKAVSAFQSR-APGT 152 (166)
T ss_pred CCCCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec-----C--CceEEEEehhhHHHHHHHHhhcCC-CCCc
Confidence 3344466888876666652 344 45566789999999764 2 336999999999999998877653 3344
Q ss_pred EEeeCC
Q psy14193 209 LIRDQH 214 (239)
Q Consensus 209 ~l~~~~ 214 (239)
.+.+.+
T Consensus 153 m~qCsW 158 (166)
T PF15023_consen 153 MFQCSW 158 (166)
T ss_pred eEEeec
Confidence 555444
No 195
>KOG0804|consensus
Probab=86.67 E-value=2.2 Score=37.83 Aligned_cols=66 Identities=18% Similarity=0.188 Sum_probs=55.4
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhcCC-CeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEe
Q psy14193 138 SHSIFIGNIPFEAEEEELRKAFESCG-EIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEID 205 (239)
Q Consensus 138 ~~~l~V~nLp~~~t~~~l~~~F~~~G-~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~ 205 (239)
+..|+|-.+|..++-.||..++.++- .|..+++++|.. ..+=...|.|.+.++|..--...||+.+
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~--pnrymvLIkFr~q~da~~Fy~efNGk~F 140 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGM--PNRYMVLIKFRDQADADTFYEEFNGKQF 140 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCC--CceEEEEEEeccchhHHHHHHHcCCCcC
Confidence 67899999999999999999998764 688999999732 1233589999999999988899999866
No 196
>KOG0115|consensus
Probab=86.66 E-value=1.2 Score=36.61 Aligned_cols=80 Identities=13% Similarity=0.137 Sum_probs=53.1
Q ss_pred ccccccccccceeEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccCCceeEEEEeecccccCCCccceeeecccccC
Q psy14193 13 IPTQNRNLMSKLKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHE 92 (239)
Q Consensus 13 ~~~~n~~~~~~~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t 92 (239)
-.+|.+++..|+.+-|-....+ ... ..+.....+.+.+.+-|+.||+|..-.+ ..| +.
T Consensus 11 k~eLd~~~~~~~~lr~rfa~~a-~l~---V~nl~~~~sndll~~~f~~fg~~e~av~---~vD---------------~r 68 (275)
T KOG0115|consen 11 KRELDGRFPKGRSLRVRFAMHA-ELY---VVNLMQGASNDLLEQAFRRFGPIERAVA---KVD---------------DR 68 (275)
T ss_pred HHhcCCCCCCCCceEEEeeccc-eEE---EEecchhhhhHHHHHhhhhcCccchhee---eec---------------cc
Confidence 3578888888887777554332 111 1111222333789999999999986542 222 23
Q ss_pred CCCcceEEEEeCCHHHHHHHHH
Q psy14193 93 KRTNMNAYVRFKNLESVEKALE 114 (239)
Q Consensus 93 ~~~~G~afV~f~~~e~a~~Ai~ 114 (239)
++..|-++|.|.+.-.|.+|..
T Consensus 69 ~k~t~eg~v~~~~k~~a~~a~r 90 (275)
T KOG0115|consen 69 GKPTREGIVEFAKKPNARKAAR 90 (275)
T ss_pred ccccccchhhhhcchhHHHHHH
Confidence 5566789999999999999988
No 197
>KOG2253|consensus
Probab=84.60 E-value=0.79 Score=42.38 Aligned_cols=68 Identities=16% Similarity=0.276 Sum_probs=58.3
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeC
Q psy14193 137 NSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQ 213 (239)
Q Consensus 137 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~ 213 (239)
+..++||+|+...+..+-++.+...||-|.++.... |||..|..+.-+.+|+..++-..+++..+.+.
T Consensus 39 ~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~ 106 (668)
T KOG2253|consen 39 PRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLIEN 106 (668)
T ss_pred CCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhhcc
Confidence 478999999999999999999999999887663321 89999999999999999988888887777654
No 198
>KOG4285|consensus
Probab=84.33 E-value=3.9 Score=34.45 Aligned_cols=66 Identities=11% Similarity=0.151 Sum_probs=46.9
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEe
Q psy14193 138 SHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIR 211 (239)
Q Consensus 138 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~ 211 (239)
...|-|-+.|+.-. .-+..+|++||+|++.... .+ -.+-+|.|.+..+|.+|+ ..||.++++.++.
T Consensus 197 D~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~---~n---gNwMhirYssr~~A~KAL-skng~ii~g~vmi 262 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTP---SN---GNWMHIRYSSRTHAQKAL-SKNGTIIDGDVMI 262 (350)
T ss_pred cceEEEeccCccch-hHHHHHHHhhCeeeeeecC---CC---CceEEEEecchhHHHHhh-hhcCeeeccceEE
Confidence 45666777776543 5678899999999876433 12 238899999999888764 5677777666553
No 199
>KOG4849|consensus
Probab=84.18 E-value=0.75 Score=39.37 Aligned_cols=61 Identities=11% Similarity=0.221 Sum_probs=46.1
Q ss_pred HHHHhcccCC--ceeEEEEeecccccCCCccceeeecccccCCCCcceEEEEeCCHHHHHHHHH-hCCCccCCeeEEEec
Q psy14193 53 SVTSMFKPYG--EVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALE-MNGHVIDEHTIRVDK 129 (239)
Q Consensus 53 ~l~~~F~~~G--~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV~f~~~e~a~~Ai~-~~~~~l~g~~i~v~~ 129 (239)
||.+.....| .+.++++ ......|.|+|||.|...+..+..+.++ +..+.|.|+.-.|..
T Consensus 96 DL~~A~~S~G~~~~~dmKF-----------------FENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~ 158 (498)
T KOG4849|consen 96 DLLKALQSTGLAQFADMKF-----------------FENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLS 158 (498)
T ss_pred HHHHHHHhhhHHHHhhhhh-----------------hhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeec
Confidence 7777777767 3444442 2234567788999999999999999999 889999998777654
Q ss_pred c
Q psy14193 130 A 130 (239)
Q Consensus 130 ~ 130 (239)
.
T Consensus 159 ~ 159 (498)
T KOG4849|consen 159 Y 159 (498)
T ss_pred c
Confidence 4
No 200
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=81.20 E-value=4.2 Score=32.01 Aligned_cols=59 Identities=17% Similarity=0.053 Sum_probs=42.7
Q ss_pred cHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhC--CcEeeEEEEeeCCC
Q psy14193 151 EEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESC--GEIDNVRLIRDQHT 215 (239)
Q Consensus 151 t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~--g~~~~~r~l~~~~~ 215 (239)
..+.|+++|..++.+.....++. -+=..|.|.+.++|..+...++ +..+.|..+++..+
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s------FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~ 68 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS------FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFG 68 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT------TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE--
T ss_pred hHHHHHHHHHhcCCceEEEEcCC------CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEc
Confidence 35789999999998887766644 1236899999999999999988 89999988888543
No 201
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=78.31 E-value=7.8 Score=25.00 Aligned_cols=52 Identities=12% Similarity=0.240 Sum_probs=37.9
Q ss_pred hHHHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEEEeCCHHHHHHHHH-hCCCccCCeeEEE
Q psy14193 50 ALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALE-MNGHVIDEHTIRV 127 (239)
Q Consensus 50 r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV~f~~~e~a~~Ai~-~~~~~l~g~~i~v 127 (239)
+.+|++..+.+|+-. +|.. +. .|| ||.|.+.++|+++.. .++..+.+-.+.+
T Consensus 13 ~v~d~K~~Lr~y~~~-~I~~-----d~-------------------tGf-YIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 13 TVEDFKKRLRKYRWD-RIRD-----DR-------------------TGF-YIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred cHHHHHHHHhcCCcc-eEEe-----cC-------------------CEE-EEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 337999999999853 3331 11 233 889999999999999 8888887766543
No 202
>KOG2416|consensus
Probab=77.77 E-value=1.2 Score=40.82 Aligned_cols=56 Identities=14% Similarity=0.271 Sum_probs=41.8
Q ss_pred HHHHHhcc-cCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEEEeCCHHHHHHHHH-hCCCcc---CCeeEE
Q psy14193 52 SSVTSMFK-PYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALE-MNGHVI---DEHTIR 126 (239)
Q Consensus 52 ~~l~~~F~-~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV~f~~~e~a~~Ai~-~~~~~l---~g~~i~ 126 (239)
-+|+.+.. ..|.|++.+ .|. -+..|||.|.+.++|..... |||..+ .++.|.
T Consensus 459 gQLkelL~rtgg~Vee~W-----mDk------------------IKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~ 515 (718)
T KOG2416|consen 459 GQLKELLGRTGGNVEEFW-----MDK------------------IKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLI 515 (718)
T ss_pred HHHHHHHhhccCchHHHH-----HHH------------------hhcceeEecccHHHHHHHHHHHhccccCCCCCceeE
Confidence 78999998 677777743 221 13479999999999999999 998876 456666
Q ss_pred Eecc
Q psy14193 127 VDKA 130 (239)
Q Consensus 127 v~~~ 130 (239)
+.+.
T Consensus 516 adf~ 519 (718)
T KOG2416|consen 516 ADFV 519 (718)
T ss_pred eeec
Confidence 6554
No 203
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=75.52 E-value=19 Score=23.23 Aligned_cols=55 Identities=18% Similarity=0.141 Sum_probs=42.4
Q ss_pred CCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEee
Q psy14193 149 EAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRD 212 (239)
Q Consensus 149 ~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~ 212 (239)
.++-++++..+..|+- .+|..| .|| =||.|.+..+|.+.....+|..+-...+..
T Consensus 11 ~~~v~d~K~~Lr~y~~---~~I~~d-~tG-----fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW---DRIRDD-RTG-----FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCc---ceEEec-CCE-----EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 4678899999999963 234455 244 389999999999999999999887766543
No 204
>KOG2135|consensus
Probab=71.35 E-value=2.2 Score=38.10 Aligned_cols=72 Identities=25% Similarity=0.349 Sum_probs=52.7
Q ss_pred cEEEEcCCCCCC-cHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeCCCCC
Q psy14193 139 HSIFIGNIPFEA-EEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNI 217 (239)
Q Consensus 139 ~~l~V~nLp~~~-t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~~~~~ 217 (239)
+.+-+.-.|... +..+|...|.+||+|..|.+-.. .--|.|+|.+..+|-+| -..+|.++++|.|++.|-+.
T Consensus 373 s~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~------~~~a~vTF~t~aeag~a-~~s~~avlnnr~iKl~whnp 445 (526)
T KOG2135|consen 373 SPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS------SLHAVVTFKTRAEAGEA-YASHGAVLNNRFIKLFWHNP 445 (526)
T ss_pred chhhhhccCCCCchHhhhhhhhhhcCccccccccCc------hhhheeeeeccccccch-hccccceecCceeEEEEecC
Confidence 344444555554 57899999999999999876433 23589999999877544 45678888888888876654
No 205
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=71.12 E-value=13 Score=24.27 Aligned_cols=47 Identities=17% Similarity=0.150 Sum_probs=36.2
Q ss_pred EEEEEecChHHHHHHHHHhCCcEeeEEEEeeCCCCCCcceEEEEeCCh
Q psy14193 182 FGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKVS 229 (239)
Q Consensus 182 ~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~~~~~~~G~~fv~f~~~ 229 (239)
+.++.|.+..+|.++-..+...-+.++++..+.. .+.|+|+..--+.
T Consensus 3 ~~~i~F~st~~a~~~ek~lk~~gi~~~liP~P~~-i~~~CG~al~~~~ 49 (73)
T PF11823_consen 3 YYLITFPSTHDAMKAEKLLKKNGIPVRLIPTPRE-ISAGCGLALRFEP 49 (73)
T ss_pred eEEEEECCHHHHHHHHHHHHHCCCcEEEeCCChh-ccCCCCEEEEECh
Confidence 6899999999999998888888788888887654 4667776544433
No 206
>KOG2591|consensus
Probab=70.85 E-value=5.8 Score=36.28 Aligned_cols=52 Identities=19% Similarity=0.306 Sum_probs=38.5
Q ss_pred HHHHHhcc--cCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEEEeCCHHHHHHHHH-hC--CCccCCeeEE
Q psy14193 52 SSVTSMFK--PYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALE-MN--GHVIDEHTIR 126 (239)
Q Consensus 52 ~~l~~~F~--~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV~f~~~e~a~~Ai~-~~--~~~l~g~~i~ 126 (239)
|+++-+|+ .|-++.+|.+ ... --.||+|++..||+.|.+ +. -..|.|++|.
T Consensus 190 e~Vk~lf~~encPk~iscef---a~N---------------------~nWyITfesd~DAQqAykylreevk~fqgKpIm 245 (684)
T KOG2591|consen 190 EVVKALFKGENCPKVISCEF---AHN---------------------DNWYITFESDTDAQQAYKYLREEVKTFQGKPIM 245 (684)
T ss_pred HHHHHHhccCCCCCceeeee---eec---------------------CceEEEeecchhHHHHHHHHHHHHHhhcCcchh
Confidence 99999996 5889999995 111 147999999999999988 43 3355666554
Q ss_pred E
Q psy14193 127 V 127 (239)
Q Consensus 127 v 127 (239)
.
T Consensus 246 A 246 (684)
T KOG2591|consen 246 A 246 (684)
T ss_pred h
Confidence 3
No 207
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=69.14 E-value=14 Score=24.12 Aligned_cols=56 Identities=13% Similarity=0.171 Sum_probs=34.1
Q ss_pred CCcHHHHHHHhhcCC-----CeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeC
Q psy14193 149 EAEEEELRKAFESCG-----EIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQ 213 (239)
Q Consensus 149 ~~t~~~l~~~F~~~G-----~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~ 213 (239)
.++..+|..++...+ .|-.+++..+ |+||+-.... +.+.+..+++..+.|+.++++
T Consensus 12 g~~~~~iv~~i~~~~gi~~~~IG~I~I~~~--------~S~vev~~~~-a~~v~~~l~~~~~~gk~v~ve 72 (74)
T PF03880_consen 12 GLTPRDIVGAICNEAGIPGRDIGRIDIFDN--------FSFVEVPEEV-AEKVLEALNGKKIKGKKVRVE 72 (74)
T ss_dssp T--HHHHHHHHHTCTTB-GGGEEEEEE-SS---------EEEEE-TT--HHHHHHHHTT--SSS----EE
T ss_pred CCCHHHHHHHHHhccCCCHHhEEEEEEeee--------EEEEEECHHH-HHHHHHHhcCCCCCCeeEEEE
Confidence 467778877777654 3556776544 8999998887 889999999999999998875
No 208
>KOG4574|consensus
Probab=68.08 E-value=2.5 Score=40.39 Aligned_cols=62 Identities=15% Similarity=0.148 Sum_probs=52.7
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEe
Q psy14193 138 SHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEID 205 (239)
Q Consensus 138 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~ 205 (239)
..+.++.|.+-..+...|.-+|+.||.+.+.+.+++- -.+.|+|.+.+.|..|...++|+.+
T Consensus 298 qp~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~------N~alvs~~s~~sai~a~dAl~gkev 359 (1007)
T KOG4574|consen 298 QPKQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDL------NMALVSFSSVESAILALDALQGKEV 359 (1007)
T ss_pred cchhhhhcccccchHHHHHHHHHhhcchhhheecccc------cchhhhhHHHHHHHHhhhhhcCCcc
Confidence 3456667777788889999999999999999887773 2689999999999999999999865
No 209
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=64.87 E-value=9.3 Score=25.02 Aligned_cols=32 Identities=34% Similarity=0.559 Sum_probs=18.9
Q ss_pred eEEEEeCCHHHHHHHHH-hCCCccCCeeEEEecc
Q psy14193 98 NAYVRFKNLESVEKALE-MNGHVIDEHTIRVDKA 130 (239)
Q Consensus 98 ~afV~f~~~e~a~~Ai~-~~~~~l~g~~i~v~~~ 130 (239)
|.||+-... .|+.++. +++..+.|+++.|..+
T Consensus 42 ~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 42 FSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp -EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred EEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 899988765 6788888 9999999999998764
No 210
>KOG4574|consensus
Probab=62.37 E-value=4.8 Score=38.63 Aligned_cols=60 Identities=28% Similarity=0.307 Sum_probs=48.2
Q ss_pred HHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEEEeCCHHHHHHHHH-hCCCcc--CCeeEEEe
Q psy14193 52 SSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALE-MNGHVI--DEHTIRVD 128 (239)
Q Consensus 52 ~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV~f~~~e~a~~Ai~-~~~~~l--~g~~i~v~ 128 (239)
.-|..+|++||.|.+.+. .+ ..-.|.|+|.+.+.|-.|.+ ++|.++ -|-+.+|.
T Consensus 313 ssL~~l~s~yg~v~s~wt---lr--------------------~~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~ 369 (1007)
T KOG4574|consen 313 SSLATLCSDYGSVASAWT---LR--------------------DLNMALVSFSSVESAILALDALQGKEVSVTGAPSRVS 369 (1007)
T ss_pred HHHHHHHHhhcchhhhee---cc--------------------cccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEE
Confidence 789999999999999883 11 12369999999999999999 999876 57778887
Q ss_pred ccCCCC
Q psy14193 129 KALTTT 134 (239)
Q Consensus 129 ~~~~~~ 134 (239)
.++.-+
T Consensus 370 ~ak~~~ 375 (1007)
T KOG4574|consen 370 FAKTLP 375 (1007)
T ss_pred eccccc
Confidence 776443
No 211
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=59.63 E-value=47 Score=22.09 Aligned_cols=58 Identities=14% Similarity=0.160 Sum_probs=41.1
Q ss_pred EEEEcCCCCCCcHHHHHHHhhc-CC-CeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHh
Q psy14193 140 SIFIGNIPFEAEEEELRKAFES-CG-EIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFES 200 (239)
Q Consensus 140 ~l~V~nLp~~~t~~~l~~~F~~-~G-~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~ 200 (239)
.-|+-.++...+..+|++.++. || .|..+..+.-+ .+ .-=|||.+...+.|...+..+
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~-~~--~KKA~VtL~~g~~a~~va~k~ 74 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITP-RG--EKKAYVKLAEEYAAEEIASRL 74 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcC-CC--ceEEEEEECCCCcHHHHHHhh
Confidence 3455567889999999999987 66 67777665543 22 224999998888777665543
No 212
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=56.07 E-value=55 Score=22.20 Aligned_cols=58 Identities=14% Similarity=0.175 Sum_probs=40.9
Q ss_pred EEEEcCCCCCCcHHHHHHHhhc-CC-CeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHh
Q psy14193 140 SIFIGNIPFEAEEEELRKAFES-CG-EIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFES 200 (239)
Q Consensus 140 ~l~V~nLp~~~t~~~l~~~F~~-~G-~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~ 200 (239)
.-|.-.++...+..+|++.++. || .|.+|..+.-+ .+ .-=|||.+....+|...+..+
T Consensus 22 n~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~-~~--~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 22 NKLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITP-KG--EKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcC-CC--cEEEEEEeCCCCcHHHHHHhh
Confidence 3444556888999999999987 67 67777766553 22 224999999888777665443
No 213
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=55.56 E-value=32 Score=24.84 Aligned_cols=55 Identities=25% Similarity=0.358 Sum_probs=30.1
Q ss_pred EEEEcCCCCC---------CcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHH
Q psy14193 140 SIFIGNIPFE---------AEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKA 197 (239)
Q Consensus 140 ~l~V~nLp~~---------~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~ 197 (239)
++.|.|+|.. .+.+.|.+.|..|.++. ++.+.++ ..+.|++.|.|.+.-...+.+
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~--~gh~g~aiv~F~~~w~Gf~~A 73 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGK--QGHTGFAIVEFNKDWSGFKNA 73 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEET--TEEEEEEEEE--SSHHHHHHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCC--CCCcEEEEEEECCChHHHHHH
Confidence 5566677543 35588999999998765 6566664 246899999998865444333
No 214
>PF01071 GARS_A: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; InterPro: IPR020561 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ....
Probab=55.55 E-value=30 Score=27.47 Aligned_cols=51 Identities=20% Similarity=0.103 Sum_probs=36.7
Q ss_pred EEEEecChHHHHHHHHHhCCcEeeEEEEeeCCCCCCcceEEEEeCChHHHHhhhhc
Q psy14193 183 GYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKVSFTTLSSIFS 238 (239)
Q Consensus 183 ~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~~~~~~~G~~fv~f~~~~~a~~a~~~ 238 (239)
.|..|.+.++|...+....... +-++..+...|-|-+-.++.++|+.|+.+
T Consensus 19 ~~~~f~~~~~A~~~l~~~~~p~-----~ViKadGla~GKGV~i~~~~~eA~~~l~~ 69 (194)
T PF01071_consen 19 KYKVFTDYEEALEYLEEQGYPY-----VVIKADGLAAGKGVVIADDREEALEALRE 69 (194)
T ss_dssp -EEEESSHHHHHHHHHHHSSSE-----EEEEESSSCTTTSEEEESSHHHHHHHHHH
T ss_pred CeeEECCHHHHHHHHHhcCCCc-----eEEccCCCCCCCEEEEeCCHHHHHHHHHH
Confidence 4788999998888888776655 33333455566667777999999998753
No 215
>TIGR02542 B_forsyth_147 Bacteroides forsythus 147-residue repeat. The longest predicted protein in Bacteroides forsythus ATCC 43037 is over 3000 residues long and lacks homology to other known proteins. Immediately after the signal sequence are four tandem repeats, approximately 147 residues long. This model describes that repeat. This model describes that repeat.
Probab=52.33 E-value=42 Score=24.24 Aligned_cols=45 Identities=22% Similarity=0.319 Sum_probs=29.7
Q ss_pred CCCCcHHHHHHHhhc---CCCeeEEEEeecCCCCCCceEEEEEecChH
Q psy14193 147 PFEAEEEELRKAFES---CGEIDNVRLIRDQHTNIGKGFGYVNFKAEE 191 (239)
Q Consensus 147 p~~~t~~~l~~~F~~---~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e 191 (239)
|+.+|-.+++++|.. |-.|++-.+.+|--...+-..||.-|....
T Consensus 83 PYTlT~~e~r~iF~Epm~YQGITReQV~rdGLP~GsYRiCFrL~~~~~ 130 (145)
T TIGR02542 83 PYTLTYNELRQIFREPMVYQGITREQVQRDGLPEGSYRICFRLFNATQ 130 (145)
T ss_pred ceeeeHHHHHHHHhhhhhhccccHHHHhhcCCCCCceEEEEEEeccch
Confidence 567899999999985 666766666665222223446888776543
No 216
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=48.16 E-value=41 Score=28.64 Aligned_cols=56 Identities=23% Similarity=0.350 Sum_probs=39.1
Q ss_pred EEEEeCCHHHHHHHHH-hCCCccCCeeEEEeccCCCCCCCCcEEEEcCCCCCCcHHHHHHHhhc
Q psy14193 99 AYVRFKNLESVEKALE-MNGHVIDEHTIRVDKALTTTKSNSHSIFIGNIPFEAEEEELRKAFES 161 (239)
Q Consensus 99 afV~f~~~e~a~~Ai~-~~~~~l~g~~i~v~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~ 161 (239)
|||+|++..+|..|.+ ..... +..+.+..+.++. -|+=.||..+..+..++..+..
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~APeP~-----DI~W~NL~~~~~~r~~R~~~~~ 57 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSPAPEPD-----DIIWENLSISSKQRFLRRIIVN 57 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEeeCCCcc-----cccccccCCChHHHHHHHHHHH
Confidence 7999999999999998 44333 3445776666553 4555788777777666665554
No 217
>COG1278 CspC Cold shock proteins [Transcription]
Probab=48.10 E-value=8.4 Score=24.94 Aligned_cols=19 Identities=26% Similarity=0.427 Sum_probs=13.6
Q ss_pred eeCCCCCCcceEEEEeCCh
Q psy14193 211 RDQHTNIGKGFGYVNFKVS 229 (239)
Q Consensus 211 ~~~~~~~~~G~~fv~f~~~ 229 (239)
+|++-+..+|||||.-++-
T Consensus 5 tVKwfn~~KGfGFI~p~~G 23 (67)
T COG1278 5 TVKWFNATKGFGFITPEDG 23 (67)
T ss_pred eEEEeeCCCcceEcCCCCC
Confidence 4566677888998876654
No 218
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=45.68 E-value=34 Score=22.28 Aligned_cols=63 Identities=6% Similarity=-0.004 Sum_probs=40.5
Q ss_pred HHHHHHhhcCC-CeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeCCCCCC
Q psy14193 153 EELRKAFESCG-EIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIG 218 (239)
Q Consensus 153 ~~l~~~F~~~G-~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~~~~~~ 218 (239)
.+|.+.|..+| ++..+.-+..+.++.+-..-+|+.....+-.. .++=+.++++.+.|...++.
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~k~ 65 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPHKR 65 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCccc
Confidence 47888889888 78888877776667777778888765542222 23334455555666544443
No 219
>KOG4410|consensus
Probab=44.49 E-value=44 Score=28.18 Aligned_cols=47 Identities=11% Similarity=0.167 Sum_probs=34.9
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhcCCC-eeEEEEeecCCCCCCceEEEEEecCh
Q psy14193 138 SHSIFIGNIPFEAEEEELRKAFESCGE-IDNVRLIRDQHTNIGKGFGYVNFKAE 190 (239)
Q Consensus 138 ~~~l~V~nLp~~~t~~~l~~~F~~~G~-i~~v~i~~~~~tg~~kg~~fV~F~~~ 190 (239)
..-|+++|||.++.-.+|+..+..-|- ..++.+ . | +.|-||+.|-+.
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~isw--k---g-~~~k~flh~~~~ 377 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKRECTPMSISW--K---G-HFGKCFLHFGNR 377 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCCCceeEee--e---c-CCcceeEecCCc
Confidence 466999999999999999999887652 233333 2 2 466799999664
No 220
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=42.75 E-value=53 Score=20.88 Aligned_cols=18 Identities=33% Similarity=0.551 Sum_probs=15.1
Q ss_pred HHHHHHhhcCCCeeEEEE
Q psy14193 153 EELRKAFESCGEIDNVRL 170 (239)
Q Consensus 153 ~~l~~~F~~~G~i~~v~i 170 (239)
.+|+++|+..|+|.-+.+
T Consensus 9 ~~iR~~fs~lG~I~vLYv 26 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYV 26 (62)
T ss_pred HHHHHHHHhcCcEEEEEE
Confidence 689999999999876554
No 221
>KOG4483|consensus
Probab=39.95 E-value=1.1e+02 Score=27.24 Aligned_cols=67 Identities=19% Similarity=0.253 Sum_probs=50.9
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhcCCC-eeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEee
Q psy14193 138 SHSIFIGNIPFEAEEEELRKAFESCGE-IDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRD 212 (239)
Q Consensus 138 ~~~l~V~nLp~~~t~~~l~~~F~~~G~-i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~ 212 (239)
...|=|.++|.....++|-..|+.|+. =-+|.|+-|. .+|-.|.+...|..+ +.+...++..|.|..
T Consensus 391 pHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~Aaea-Lt~kh~~lKiRpLaq 458 (528)
T KOG4483|consen 391 PHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEA-LTLKHDWLKIRPLAQ 458 (528)
T ss_pred cceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHH-hhccCceEEeeehhh
Confidence 678889999999989999999999974 2345565552 689999999956544 555777778877754
No 222
>PRK09937 stationary phase/starvation inducible regulatory protein CspD; Provisional
Probab=39.56 E-value=16 Score=24.15 Aligned_cols=17 Identities=29% Similarity=0.413 Sum_probs=11.4
Q ss_pred eCCCCCCcceEEEEeCC
Q psy14193 212 DQHTNIGKGFGYVNFKV 228 (239)
Q Consensus 212 ~~~~~~~~G~~fv~f~~ 228 (239)
+.+-+..||||||.=++
T Consensus 6 Vkwfn~~KGfGFI~~~~ 22 (74)
T PRK09937 6 VKWFNNAKGFGFICPEG 22 (74)
T ss_pred EEEEeCCCCeEEEeeCC
Confidence 34445678999996554
No 223
>PRK14998 cold shock-like protein CspD; Provisional
Probab=39.01 E-value=16 Score=24.07 Aligned_cols=16 Identities=31% Similarity=0.499 Sum_probs=11.1
Q ss_pred CCCCCCcceEEEEeCC
Q psy14193 213 QHTNIGKGFGYVNFKV 228 (239)
Q Consensus 213 ~~~~~~~G~~fv~f~~ 228 (239)
.+-+..+|||||.=++
T Consensus 7 kwfn~~kGfGFI~~~~ 22 (73)
T PRK14998 7 KWFNNAKGFGFICPEG 22 (73)
T ss_pred EEEeCCCceEEEecCC
Confidence 3445578999997655
No 224
>KOG4213|consensus
Probab=38.87 E-value=34 Score=26.79 Aligned_cols=46 Identities=13% Similarity=0.103 Sum_probs=31.7
Q ss_pred HHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEEEeCCHHHHHHHHHh
Q psy14193 52 SSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALEM 115 (239)
Q Consensus 52 ~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV~f~~~e~a~~Ai~~ 115 (239)
++|.++-+ |.+..|.++..-. .....+|--||+|.+.++|...++-
T Consensus 124 ~~l~qw~~--~k~~nv~mr~~~~----------------k~~~fkGsvkv~f~tk~qa~a~~~~ 169 (205)
T KOG4213|consen 124 DDLNQWAS--GKGHNVKMRRHGN----------------KAHPFKGSVKVTFQTKEQAFANDDT 169 (205)
T ss_pred HHHHHHhc--ccceEeeccccCC----------------CCCCCCCceEEEeecHHHHHhhhhh
Confidence 66666666 8888877432111 1125578999999999999987763
No 225
>KOG2891|consensus
Probab=38.38 E-value=15 Score=30.67 Aligned_cols=34 Identities=44% Similarity=0.700 Sum_probs=27.8
Q ss_pred CcEEEEcCCCCCC------------cHHHHHHHhhcCCCeeEEEEe
Q psy14193 138 SHSIFIGNIPFEA------------EEEELRKAFESCGEIDNVRLI 171 (239)
Q Consensus 138 ~~~l~V~nLp~~~------------t~~~l~~~F~~~G~i~~v~i~ 171 (239)
..+||+.++|-.| +++-|+..|+.||.|..+.|+
T Consensus 149 pdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdip 194 (445)
T KOG2891|consen 149 PDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIP 194 (445)
T ss_pred CCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCc
Confidence 6789999988542 468899999999999888775
No 226
>PRK15464 cold shock-like protein CspH; Provisional
Probab=37.90 E-value=14 Score=24.04 Aligned_cols=17 Identities=12% Similarity=0.073 Sum_probs=11.7
Q ss_pred eCCCCCCcceEEEEeCC
Q psy14193 212 DQHTNIGKGFGYVNFKV 228 (239)
Q Consensus 212 ~~~~~~~~G~~fv~f~~ 228 (239)
+.+-+..+|||||.=++
T Consensus 9 Vk~fn~~KGfGFI~~~~ 25 (70)
T PRK15464 9 VKTFDRKSGKGFIIPSD 25 (70)
T ss_pred EEEEECCCCeEEEccCC
Confidence 33445678999997665
No 227
>TIGR02381 cspD cold shock domain protein CspD. This model represents what appears to be a phylogenetically distinct clade, containing E. coli CspD and related proteobacterial proteins within the larger family of cold shock domain proteins described by pfam model pfam00313. The gene symbol cspD may have been used idependently for other subfamilies of cold shock domain proteins, such as for B. subtilis CspD. These proteins typically are shorter than 70 amino acids. In E. coli, CspD is a stress response protein induced in stationary phase. This homodimer binds single-stranded DNA and appears to inhibit DNA replication.
Probab=36.87 E-value=18 Score=23.30 Aligned_cols=17 Identities=29% Similarity=0.413 Sum_probs=12.0
Q ss_pred eCCCCCCcceEEEEeCC
Q psy14193 212 DQHTNIGKGFGYVNFKV 228 (239)
Q Consensus 212 ~~~~~~~~G~~fv~f~~ 228 (239)
+.+-+..+|||||.-++
T Consensus 6 Vk~f~~~kGfGFI~~~~ 22 (68)
T TIGR02381 6 VKWFNNAKGFGFICPEG 22 (68)
T ss_pred EEEEeCCCCeEEEecCC
Confidence 34445678999998765
No 228
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=36.53 E-value=69 Score=27.12 Aligned_cols=56 Identities=16% Similarity=0.259 Sum_probs=43.2
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCC-------CCCCceEEEEEecChHHH
Q psy14193 138 SHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQH-------TNIGKGFGYVNFKAEEEE 193 (239)
Q Consensus 138 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~-------tg~~kg~~fV~F~~~e~a 193 (239)
.+.|...|+..+++--.+...|-+||+|+++.++.+.. ......-..+.|-+.+.+
T Consensus 15 TRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~C 77 (309)
T PF10567_consen 15 TRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREIC 77 (309)
T ss_pred eHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHH
Confidence 67788899999999889999999999999999987740 112234567888777644
No 229
>PRK01178 rps24e 30S ribosomal protein S24e; Reviewed
Probab=36.27 E-value=1.3e+02 Score=21.02 Aligned_cols=22 Identities=9% Similarity=0.461 Sum_probs=15.1
Q ss_pred cccccccccccccceeEEeehh
Q psy14193 10 LTMIPTQNRNLMSKLKVFLNIW 31 (239)
Q Consensus 10 ~~~~~~~n~~~~~~~~v~v~~~ 31 (239)
+.++..-+..+++-+++.+.-.
T Consensus 3 i~I~~~~~N~LL~Rke~~~~v~ 24 (99)
T PRK01178 3 IKIISDKENPLLGRREIKFEVY 24 (99)
T ss_pred EEEEEeeecCCcCcEEEEEEEE
Confidence 4455666777778888887643
No 230
>PRK15463 cold shock-like protein CspF; Provisional
Probab=35.94 E-value=17 Score=23.60 Aligned_cols=16 Identities=13% Similarity=0.056 Sum_probs=11.4
Q ss_pred CCCCCCcceEEEEeCC
Q psy14193 213 QHTNIGKGFGYVNFKV 228 (239)
Q Consensus 213 ~~~~~~~G~~fv~f~~ 228 (239)
.+-+..+|||||.-++
T Consensus 10 k~fn~~kGfGFI~~~~ 25 (70)
T PRK15463 10 KTFDGKSGKGLITPSD 25 (70)
T ss_pred EEEeCCCceEEEecCC
Confidence 3445578999998765
No 231
>PRK10943 cold shock-like protein CspC; Provisional
Probab=35.56 E-value=18 Score=23.45 Aligned_cols=14 Identities=36% Similarity=0.579 Sum_probs=10.3
Q ss_pred CCCCcceEEEEeCC
Q psy14193 215 TNIGKGFGYVNFKV 228 (239)
Q Consensus 215 ~~~~~G~~fv~f~~ 228 (239)
-+..+|||||.=++
T Consensus 11 f~~~kGfGFI~~~~ 24 (69)
T PRK10943 11 FNESKGFGFITPAD 24 (69)
T ss_pred EeCCCCcEEEecCC
Confidence 34578999998654
No 232
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=35.33 E-value=18 Score=31.78 Aligned_cols=60 Identities=22% Similarity=0.225 Sum_probs=48.3
Q ss_pred CcEEEEcCCCCCCcH--------HHHHHHhhc--CCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHH
Q psy14193 138 SHSIFIGNIPFEAEE--------EELRKAFES--CGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKA 197 (239)
Q Consensus 138 ~~~l~V~nLp~~~t~--------~~l~~~F~~--~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~ 197 (239)
.+.+|+.+.+...+. +++...|.+ .+++..++..++.....++|..|++|+..+.+++..
T Consensus 174 qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~n 243 (438)
T COG5193 174 QRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFN 243 (438)
T ss_pred hhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHh
Confidence 567888888766544 499999998 678888888888656778899999999999887665
No 233
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=35.02 E-value=77 Score=20.46 Aligned_cols=57 Identities=18% Similarity=0.349 Sum_probs=37.1
Q ss_pred HHHHHHhhcCC-CeeEEEEeecCCCCCCceEEEEEecChHHH--HHHHHHhCCcEeeEEE
Q psy14193 153 EELRKAFESCG-EIDNVRLIRDQHTNIGKGFGYVNFKAEEEE--LRKAFESCGEIDNVRL 209 (239)
Q Consensus 153 ~~l~~~F~~~G-~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a--~~a~~~~~g~~~~~r~ 209 (239)
++|.+.|...| +|..+.-+..+.++.+.-.-||+.+...+. .-.+..++|..+....
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~i~~Ik~l~~~~V~vE~ 61 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKEIYKIKTLCGQRVKVER 61 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccceeehHhhCCeEEEEec
Confidence 57788888888 777877777666677777889988776431 2223445555544433
No 234
>PRK09507 cspE cold shock protein CspE; Reviewed
Probab=34.97 E-value=19 Score=23.33 Aligned_cols=14 Identities=36% Similarity=0.617 Sum_probs=10.1
Q ss_pred CCCCcceEEEEeCC
Q psy14193 215 TNIGKGFGYVNFKV 228 (239)
Q Consensus 215 ~~~~~G~~fv~f~~ 228 (239)
-+..+|||||.=++
T Consensus 11 f~~~kGyGFI~~~~ 24 (69)
T PRK09507 11 FNESKGFGFITPED 24 (69)
T ss_pred EeCCCCcEEEecCC
Confidence 34568999997655
No 235
>KOG0804|consensus
Probab=32.58 E-value=1.2e+02 Score=27.43 Aligned_cols=52 Identities=12% Similarity=0.351 Sum_probs=37.1
Q ss_pred HHHHHhcccCC-ceeEEEEeecccccCCCccceeeecccccCCCCcceEEEEeCCHHHHHHHHH-hCCCccCC
Q psy14193 52 SSVTSMFKPYG-EVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALE-MNGHVIDE 122 (239)
Q Consensus 52 ~~l~~~F~~~G-~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV~f~~~e~a~~Ai~-~~~~~l~g 122 (239)
.||..+...+- .|.++++ .++ |.|. +=-..|.|.+.++|..-.+ +||..+..
T Consensus 89 ~Dll~F~~~~~~~I~~iri---vRd--~~pn--------------rymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 89 HDLLRFCASFIKQISDIRI---VRD--GMPN--------------RYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred HHHHHHHHHHhhhhheeEE---eec--CCCc--------------eEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 78888887654 4778873 222 2221 1247899999999999999 99998843
No 236
>KOG1295|consensus
Probab=29.62 E-value=80 Score=27.70 Aligned_cols=68 Identities=19% Similarity=0.205 Sum_probs=44.3
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhcCCC-eeEEEEeecCCC--CCCceEEEEEecChHHHHHHHHHhCCcEe
Q psy14193 138 SHSIFIGNIPFEAEEEELRKAFESCGE-IDNVRLIRDQHT--NIGKGFGYVNFKAEEEELRKAFESCGEID 205 (239)
Q Consensus 138 ~~~l~V~nLp~~~t~~~l~~~F~~~G~-i~~v~i~~~~~t--g~~kg~~fV~F~~~e~a~~a~~~~~g~~~ 205 (239)
...+.|.+||+..++.++.+-..++-+ +....+.....+ ..-.+.+||.|..+++...-....+|.++
T Consensus 7 ~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 7 KVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred ceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEE
Confidence 457889999999999999888877642 222333322111 11246789999999975555555666654
No 237
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=28.91 E-value=92 Score=20.85 Aligned_cols=24 Identities=17% Similarity=0.184 Sum_probs=20.0
Q ss_pred CcceEEEEeCCHHHHHHHHH-hCCC
Q psy14193 95 TNMNAYVRFKNLESVEKALE-MNGH 118 (239)
Q Consensus 95 ~~G~afV~f~~~e~a~~Ai~-~~~~ 118 (239)
.+||-||+=.+++++..|+. +.+.
T Consensus 43 lkGyIyVEA~~~~~V~~ai~gi~~i 67 (84)
T PF03439_consen 43 LKGYIYVEAERESDVKEAIRGIRHI 67 (84)
T ss_dssp STSEEEEEESSHHHHHHHHTT-TTE
T ss_pred CceEEEEEeCCHHHHHHHHhcccce
Confidence 57999999999999999998 5543
No 238
>PRK10354 RNA chaperone/anti-terminator; Provisional
Probab=28.85 E-value=27 Score=22.60 Aligned_cols=13 Identities=38% Similarity=0.744 Sum_probs=9.5
Q ss_pred CCCcceEEEEeCC
Q psy14193 216 NIGKGFGYVNFKV 228 (239)
Q Consensus 216 ~~~~G~~fv~f~~ 228 (239)
+..+|||||.=++
T Consensus 13 ~~~kGfGFI~~~~ 25 (70)
T PRK10354 13 NADKGFGFITPDD 25 (70)
T ss_pred eCCCCcEEEecCC
Confidence 3468999998654
No 239
>PRK09890 cold shock protein CspG; Provisional
Probab=28.14 E-value=28 Score=22.58 Aligned_cols=14 Identities=36% Similarity=0.700 Sum_probs=10.1
Q ss_pred CCCcceEEEEeCCh
Q psy14193 216 NIGKGFGYVNFKVS 229 (239)
Q Consensus 216 ~~~~G~~fv~f~~~ 229 (239)
+..+|||||.=++-
T Consensus 13 ~~~kGfGFI~~~~g 26 (70)
T PRK09890 13 NADKGFGFITPDDG 26 (70)
T ss_pred ECCCCcEEEecCCC
Confidence 34689999987653
No 240
>PF08206 OB_RNB: Ribonuclease B OB domain; InterPro: IPR013223 This domain includes the N-terminal OB domain found in ribonuclease B proteins in one or two copies.; PDB: 2ID0_D 2IX1_A 2IX0_A.
Probab=27.64 E-value=45 Score=20.58 Aligned_cols=11 Identities=45% Similarity=0.646 Sum_probs=8.3
Q ss_pred CcceEEEEeCC
Q psy14193 218 GKGFGYVNFKV 228 (239)
Q Consensus 218 ~~G~~fv~f~~ 228 (239)
++|||||..++
T Consensus 7 ~~GfGFv~~~~ 17 (58)
T PF08206_consen 7 PKGFGFVIPDD 17 (58)
T ss_dssp SSS-EEEEECT
T ss_pred cCCCEEEEECC
Confidence 67899998886
No 241
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=27.06 E-value=2.8e+02 Score=26.10 Aligned_cols=75 Identities=11% Similarity=0.195 Sum_probs=50.7
Q ss_pred eEEEEeCCHHHHHHHHH-hCCCccCCeeEEE-----ecc---------CC--------CCCCCCcEEEEcCCCCCCcHHH
Q psy14193 98 NAYVRFKNLESVEKALE-MNGHVIDEHTIRV-----DKA---------LT--------TTKSNSHSIFIGNIPFEAEEEE 154 (239)
Q Consensus 98 ~afV~f~~~e~a~~Ai~-~~~~~l~g~~i~v-----~~~---------~~--------~~~~~~~~l~V~nLp~~~t~~~ 154 (239)
-||+++.++..-+---+ ++...+.+..|.- +++ .. ++......+|+.+|+.++.++-
T Consensus 238 ~C~iT~Tn~~TH~iIr~Nl~rSpmysG~Ieg~GPRYCPSIEDKIvrF~dK~~HqIFlEPEGl~~~evY~nGlSTSlP~dV 317 (621)
T COG0445 238 PCYITYTNEKTHEIIRDNLHRSPMYSGEIEGVGPRYCPSIEDKIVRFADKERHQIFLEPEGLDTDEVYPNGLSTSLPEDV 317 (621)
T ss_pred ceeeecCChHHHHHHHHhhhhCchhcccccccCCCCCCCHHHhhccCCCCccceEEecCCCCCCceEecCcccccCCHHH
Confidence 59999999988777666 8877776544441 111 10 0111378899999988888776
Q ss_pred HHHHhhcCCCeeEEEEee
Q psy14193 155 LRKAFESCGEIDNVRLIR 172 (239)
Q Consensus 155 l~~~F~~~G~i~~v~i~~ 172 (239)
=.++.........+.+.+
T Consensus 318 Q~~~irsipGlEna~i~r 335 (621)
T COG0445 318 QEQIIRSIPGLENAEILR 335 (621)
T ss_pred HHHHHHhCcccccceeec
Confidence 667777777777777764
No 242
>PF14714 KH_dom-like: KH-domain-like of EngA bacterial GTPase enzymes, C-terminal; PDB: 2HJG_A 1MKY_A.
Probab=25.15 E-value=2e+02 Score=19.12 Aligned_cols=58 Identities=22% Similarity=0.161 Sum_probs=31.3
Q ss_pred HHHHHhCCCccCCeeEEEeccCCCCCCCCcEEEEcCCCCCCcH-------HHHHHHhhcCCCeeE
Q psy14193 110 EKALEMNGHVIDEHTIRVDKALTTTKSNSHSIFIGNIPFEAEE-------EELRKAFESCGEIDN 167 (239)
Q Consensus 110 ~~Ai~~~~~~l~g~~i~v~~~~~~~~~~~~~l~V~nLp~~~t~-------~~l~~~F~~~G~i~~ 167 (239)
++|++.+.....|+.+++.++..-...+..-++..|-|..+++ ..|++.|.=.|....
T Consensus 12 ~~~~~~~~pp~~g~~~Ki~Y~tQv~~~PPtFv~f~N~~~~~~~sY~ryL~n~lRe~f~f~G~Pi~ 76 (80)
T PF14714_consen 12 QKALERHPPPSKGKRLKIYYATQVGTRPPTFVLFVNDPELLPESYKRYLENQLREAFGFEGVPIR 76 (80)
T ss_dssp HHHHCCS--SETTCC--EEEEEEEETTTTEEEEEES-CCC--HHHHHHHHHHHHHHH--TTS--E
T ss_pred HHHHHhCCCCCCCceeEEEEEEeCCCCCCEEEEEeCCcccCCHHHHHHHHHHHHHHCCCCceeEE
Confidence 3444433333488999999988777776667777788887774 666777765564433
No 243
>PHA02531 20 portal vertex protein; Provisional
Probab=22.68 E-value=95 Score=28.35 Aligned_cols=55 Identities=18% Similarity=0.274 Sum_probs=36.1
Q ss_pred HHHHHH-hCCCccCCeeEEEeccCCCCCCCCcEEEEcCCCCCCcHHHHHHHhhcCC
Q psy14193 109 VEKALE-MNGHVIDEHTIRVDKALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCG 163 (239)
Q Consensus 109 a~~Ai~-~~~~~l~g~~i~v~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G 163 (239)
-.+|++ +|+-.+-.-.+.+-+-...+++.-.-|=|||||+.-.++-|+++..+|-
T Consensus 251 Lh~Aikp~NqLrm~EDAlVIYRitRAPERRvFYiDVGNlPk~KAeqYlr~vm~~yk 306 (514)
T PHA02531 251 LHRAIKPANQLKLLEDALVIYRITRAPERRVFYIDVGNLPKRKAEEYLNNVMQRYK 306 (514)
T ss_pred HHHHHHHHHhhhhhhhceeeeeeccCccceEEEEEcCCCChhhHHHHHHHHHHHhh
Confidence 356666 6665553333444444444444445566799999999999999998873
No 244
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=21.98 E-value=1.7e+02 Score=20.87 Aligned_cols=26 Identities=23% Similarity=0.502 Sum_probs=22.4
Q ss_pred ceEEEEeCCHHHHHHHHH-hCCCccCC
Q psy14193 97 MNAYVRFKNLESVEKALE-MNGHVIDE 122 (239)
Q Consensus 97 G~afV~f~~~e~a~~Ai~-~~~~~l~g 122 (239)
=-+.+.|.+.++|..-.. .||+.+..
T Consensus 55 ymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 55 YMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred EEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 358899999999999999 99998744
No 245
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=21.34 E-value=3.6e+02 Score=20.39 Aligned_cols=56 Identities=14% Similarity=0.244 Sum_probs=37.4
Q ss_pred EEEEcCCCCCCcHHHHHHHhhc-CC-CeeEEEEeecCCCCCCceEEEEEecChHHHHHHHH
Q psy14193 140 SIFIGNIPFEAEEEELRKAFES-CG-EIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAF 198 (239)
Q Consensus 140 ~l~V~nLp~~~t~~~l~~~F~~-~G-~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~ 198 (239)
+-|+--++...+..+|++.++. |+ .|..|..+.-+ .|. --|||.+....+|...+.
T Consensus 83 N~yvF~Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p-~g~--KKA~V~L~~~~~aidva~ 140 (145)
T PTZ00191 83 NTLVFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITP-DGL--KKAYIRLSPDVDALDVAN 140 (145)
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCeeEEEEeEEcC-CCc--eEEEEEECCCCcHHHHHH
Confidence 4555567788899999998886 66 56677655443 222 248999977776665443
No 246
>KOG2253|consensus
Probab=20.98 E-value=48 Score=31.15 Aligned_cols=52 Identities=13% Similarity=0.103 Sum_probs=42.9
Q ss_pred HHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEEEeCCHHHHHHHHH-hCCCccCCeeEEEec
Q psy14193 52 SSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALE-MNGHVIDEHTIRVDK 129 (239)
Q Consensus 52 ~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV~f~~~e~a~~Ai~-~~~~~l~g~~i~v~~ 129 (239)
+-++.+...+|-|.++.. --|||..|....-...|+. ++...++|+.+.+..
T Consensus 55 ~~~~~il~~~g~v~s~kr--------------------------~~fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 55 EFWKSILAKSGFVPSWKR--------------------------DKFGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred HHHHHHHhhCCcchhhhh--------------------------hhhcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 567788899999987651 0199999999999999999 888888888887765
No 247
>PF10915 DUF2709: Protein of unknown function (DUF2709); InterPro: IPR024484 Members of this family appear restricted to Chlamydiales. Their function is unknown.
Probab=20.37 E-value=2.1e+02 Score=22.73 Aligned_cols=64 Identities=17% Similarity=0.345 Sum_probs=49.1
Q ss_pred EEeCCHHHHHHHHHhCCCccCCeeEEEeccCCCCCCCCcEEEEcCCCC-----C---CcHHHHHHHhhcCCC
Q psy14193 101 VRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKSNSHSIFIGNIPF-----E---AEEEELRKAFESCGE 164 (239)
Q Consensus 101 V~f~~~e~a~~Ai~~~~~~l~g~~i~v~~~~~~~~~~~~~l~V~nLp~-----~---~t~~~l~~~F~~~G~ 164 (239)
+-|.+.++|-+-++..+.....-.|.++...+......++|||.-..- + -.++.|.+..++|.+
T Consensus 47 ~I~qs~e~ai~~lE~e~KlWreteI~I~~g~p~VNE~TkkIYICPFTGKVF~DNt~~nPQDAIYDWvSkCPe 118 (238)
T PF10915_consen 47 IIFQSAEDAIRILEEEGKLWRETEIKIQSGKPSVNEQTKKIYICPFTGKVFGDNTHPNPQDAIYDWVSKCPE 118 (238)
T ss_pred hhccCHHHHHHHHHHhcchheeeeEEEecCCcccccccceEEEcCCcCccccCCCCCChHHHHHHHHhhCCc
Confidence 458899999999988888888889999888887777778888853321 1 136889999998853
No 248
>PTZ00071 40S ribosomal protein S24; Provisional
Probab=20.28 E-value=3.2e+02 Score=20.29 Aligned_cols=22 Identities=5% Similarity=0.101 Sum_probs=15.4
Q ss_pred cccccccccccccceeEEeehh
Q psy14193 10 LTMIPTQNRNLMSKLKVFLNIW 31 (239)
Q Consensus 10 ~~~~~~~n~~~~~~~~v~v~~~ 31 (239)
+.....++..+++-+++.+.-.
T Consensus 8 ir~rk~~~NpLL~RkE~~~~v~ 29 (132)
T PTZ00071 8 VRTRKFLVNPLLNRKQFVVEVL 29 (132)
T ss_pred EEEeeeeeccCcCcEEEEEEEE
Confidence 4445567778888888887644
No 249
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=20.21 E-value=77 Score=17.76 Aligned_cols=15 Identities=20% Similarity=0.612 Sum_probs=9.7
Q ss_pred CCcHHHHHHHhhcCC
Q psy14193 149 EAEEEELRKAFESCG 163 (239)
Q Consensus 149 ~~t~~~l~~~F~~~G 163 (239)
++++++|++.|.+.+
T Consensus 20 Dtd~~~Lk~vF~~i~ 34 (36)
T PF11411_consen 20 DTDEDQLKEVFNRIK 34 (36)
T ss_dssp ---HHHHHHHHHCS-
T ss_pred cCCHHHHHHHHHHhc
Confidence 578899999998764
Done!