Query psy14193
Match_columns 239
No_of_seqs 244 out of 2250
Neff 9.1
Searched_HMMs 29240
Date Fri Aug 16 21:50:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14193.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14193hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3md3_A Nuclear and cytoplasmic 100.0 7.7E-32 2.6E-36 207.3 17.8 161 24-216 1-165 (166)
2 1b7f_A Protein (SXL-lethal pro 100.0 3.2E-32 1.1E-36 210.1 15.5 161 23-214 3-167 (168)
3 4f02_A Polyadenylate-binding p 100.0 5.3E-32 1.8E-36 217.7 14.9 159 24-215 16-178 (213)
4 1fxl_A Paraneoplastic encephal 100.0 1.1E-31 3.6E-36 206.7 15.1 160 23-213 2-165 (167)
5 1l3k_A Heterogeneous nuclear r 100.0 1.8E-31 6.1E-36 211.0 16.8 162 22-215 12-180 (196)
6 3smz_A Protein raver-1, ribonu 100.0 4.4E-31 1.5E-35 220.8 19.9 176 19-237 18-244 (284)
7 2qfj_A FBP-interacting repress 100.0 3.5E-31 1.2E-35 212.4 15.1 162 24-216 29-203 (216)
8 2ghp_A U4/U6 snRNA-associated 100.0 7.8E-31 2.7E-35 220.2 17.4 159 52-236 56-271 (292)
9 2cjk_A Nuclear polyadenylated 100.0 1.3E-31 4.5E-36 206.6 8.8 160 23-215 3-163 (167)
10 3nmr_A Cugbp ELAV-like family 100.0 2E-30 7E-35 201.1 14.9 161 23-215 3-174 (175)
11 2g4b_A Splicing factor U2AF 65 100.0 3.6E-30 1.2E-34 199.4 15.4 157 22-215 3-171 (172)
12 3smz_A Protein raver-1, ribonu 100.0 1.9E-30 6.6E-35 216.9 14.8 187 9-216 70-262 (284)
13 2yh0_A Splicing factor U2AF 65 100.0 6.5E-29 2.2E-33 196.6 14.8 168 23-216 4-192 (198)
14 1fje_B Nucleolin RBD12, protei 100.0 2E-29 6.7E-34 196.0 9.9 157 22-215 12-171 (175)
15 2ghp_A U4/U6 snRNA-associated 100.0 6.4E-29 2.2E-33 208.5 13.6 183 10-216 95-289 (292)
16 3tyt_A Heterogeneous nuclear r 100.0 2E-28 6.9E-33 195.7 15.2 149 23-209 4-194 (205)
17 3pgw_A U1-A; protein-RNA compl 100.0 3.5E-27 1.2E-31 196.9 17.0 156 22-216 8-281 (282)
18 3sde_A Paraspeckle component 1 99.9 2.4E-27 8.1E-32 196.2 14.9 153 20-215 19-176 (261)
19 1qm9_A Polypyrimidine tract-bi 99.9 2.1E-27 7.2E-32 188.3 11.4 154 21-215 1-194 (198)
20 2adc_A Polypyrimidine tract-bi 99.9 9.6E-27 3.3E-31 189.0 13.8 154 22-216 33-226 (229)
21 2kn4_A Immunoglobulin G-bindin 99.9 9.7E-24 3.3E-28 161.6 10.7 123 94-216 11-148 (158)
22 2i2y_A Fusion protein consists 99.9 1.9E-22 6.5E-27 153.2 9.3 119 93-217 10-147 (150)
23 4f02_A Polyadenylate-binding p 99.9 4.6E-21 1.6E-25 153.7 12.8 101 137-237 14-161 (213)
24 4fxv_A ELAV-like protein 1; RN 99.8 7.7E-21 2.6E-25 134.3 10.3 79 137-215 18-96 (99)
25 1l3k_A Heterogeneous nuclear r 99.8 3.9E-20 1.3E-24 145.7 13.9 102 136-237 11-164 (196)
26 1fxl_A Paraneoplastic encephal 99.8 7.2E-20 2.5E-24 140.3 14.5 100 138-237 2-148 (167)
27 2cjk_A Nuclear polyadenylated 99.8 2.2E-20 7.5E-25 143.4 10.8 100 138-237 3-147 (167)
28 1b7f_A Protein (SXL-lethal pro 99.8 9E-20 3.1E-24 140.0 13.0 100 138-237 3-149 (168)
29 3nmr_A Cugbp ELAV-like family 99.8 2.4E-19 8.1E-24 138.5 13.4 99 138-237 3-154 (175)
30 3md3_A Nuclear and cytoplasmic 99.8 2.2E-19 7.6E-24 137.4 12.8 98 139-237 1-147 (166)
31 3s8s_A Histone-lysine N-methyl 99.8 1.5E-19 5.2E-24 130.0 10.4 80 137-216 5-84 (110)
32 2lea_A Serine/arginine-rich sp 99.8 8.7E-21 3E-25 141.5 3.6 118 98-216 6-125 (135)
33 2qfj_A FBP-interacting repress 99.8 7.5E-19 2.6E-23 140.4 13.9 100 138-237 28-185 (216)
34 2lkz_A RNA-binding protein 5; 99.8 1.7E-19 5.9E-24 126.2 6.7 80 137-216 8-93 (95)
35 2lxi_A RNA-binding protein 10; 99.8 1.2E-19 4.1E-24 126.1 5.7 79 138-216 1-81 (91)
36 4f25_A Polyadenylate-binding p 99.8 2.8E-19 9.6E-24 129.6 7.2 99 23-154 5-113 (115)
37 3md1_A Nuclear and cytoplasmic 99.8 1.4E-18 4.8E-23 118.3 10.1 79 138-216 1-79 (83)
38 3mdf_A Peptidyl-prolyl CIS-tra 99.8 1.7E-18 5.6E-23 118.5 8.9 79 137-215 6-84 (85)
39 3p5t_L Cleavage and polyadenyl 99.8 4.1E-19 1.4E-23 123.1 5.7 78 139-216 2-81 (90)
40 2cqc_A Arginine/serine-rich sp 99.8 4.3E-18 1.5E-22 118.9 10.8 80 137-216 14-93 (95)
41 2x1f_A MRNA 3'-END-processing 99.8 2.7E-18 9.1E-23 120.3 9.6 80 138-217 2-81 (96)
42 3bs9_A Nucleolysin TIA-1 isofo 99.8 2.7E-18 9.2E-23 117.9 9.3 79 137-215 5-83 (87)
43 1x4e_A RNA binding motif, sing 99.8 1.3E-18 4.4E-23 119.1 7.5 79 137-215 4-82 (85)
44 3s7r_A Heterogeneous nuclear r 99.8 4.8E-18 1.6E-22 116.7 10.0 79 135-214 8-86 (87)
45 1rk8_A CG8781-PA, CG8781-PA pr 99.8 3.6E-18 1.2E-22 131.6 10.0 115 101-215 11-149 (165)
46 2la6_A RNA-binding protein FUS 99.8 3.2E-18 1.1E-22 120.6 8.9 81 135-215 10-98 (99)
47 3ns6_A Eukaryotic translation 99.8 5.3E-19 1.8E-23 125.0 4.8 78 138-215 6-90 (100)
48 3ucg_A Polyadenylate-binding p 99.8 4.9E-18 1.7E-22 117.1 9.5 78 138-216 6-83 (89)
49 2e5h_A Zinc finger CCHC-type a 99.8 4.4E-18 1.5E-22 118.6 9.4 80 136-215 14-93 (94)
50 2cq0_A Eukaryotic translation 99.8 5.2E-18 1.8E-22 120.3 9.8 81 136-216 13-93 (103)
51 1fje_B Nucleolin RBD12, protei 99.7 7.6E-19 2.6E-23 136.0 5.5 101 135-237 10-154 (175)
52 2ywk_A Putative RNA-binding pr 99.7 8.8E-18 3E-22 117.3 10.4 80 136-216 14-93 (95)
53 1whw_A Hypothetical protein ri 99.7 5.5E-18 1.9E-22 119.3 9.3 80 137-216 7-86 (99)
54 4f25_A Polyadenylate-binding p 99.7 5.1E-18 1.8E-22 122.9 9.4 76 138-215 5-80 (115)
55 2do4_A Squamous cell carcinoma 99.7 6.9E-18 2.3E-22 119.1 9.8 80 136-216 15-94 (100)
56 2cpz_A CUG triplet repeat RNA- 99.7 8.6E-18 2.9E-22 121.6 10.5 80 137-216 24-103 (115)
57 2dgo_A Cytotoxic granule-assoc 99.7 1.2E-17 4E-22 120.9 10.9 81 136-216 13-93 (115)
58 2div_A TRNA selenocysteine ass 99.7 5.3E-18 1.8E-22 119.4 8.7 80 137-216 8-92 (99)
59 2jrs_A RNA-binding protein 39; 99.7 6.6E-18 2.3E-22 121.0 9.1 82 135-216 23-104 (108)
60 2dnz_A Probable RNA-binding pr 99.7 6.3E-18 2.1E-22 118.1 8.7 80 137-216 4-83 (95)
61 3pgw_S U1-70K; protein-RNA com 99.7 1.3E-18 4.5E-23 153.3 6.4 79 137-215 101-179 (437)
62 2dgs_A DAZ-associated protein 99.7 8E-18 2.7E-22 118.5 9.2 80 136-216 8-87 (99)
63 1x4h_A RNA-binding protein 28; 99.7 1.1E-17 3.9E-22 120.1 10.1 81 136-216 13-99 (111)
64 2dnm_A SRP46 splicing factor; 99.7 3.3E-18 1.1E-22 121.4 7.1 81 136-216 11-91 (103)
65 1oo0_B CG8781-PA, drosophila Y 99.7 9E-18 3.1E-22 120.5 9.4 80 136-215 24-103 (110)
66 1p27_B RNA-binding protein 8A; 99.7 6.6E-18 2.2E-22 120.4 8.6 79 137-215 22-100 (106)
67 2cqb_A Peptidyl-prolyl CIS-tra 99.7 6.4E-18 2.2E-22 119.6 8.4 80 137-216 11-90 (102)
68 2khc_A Testis-specific RNP-typ 99.7 7.8E-18 2.7E-22 122.4 9.0 79 137-215 39-117 (118)
69 2cpf_A RNA binding motif prote 99.7 9E-18 3.1E-22 118.0 9.0 80 137-216 4-86 (98)
70 1x5t_A Splicing factor 3B subu 99.7 5.2E-18 1.8E-22 118.7 7.8 80 137-216 4-84 (96)
71 1x5u_A Splicing factor 3B subu 99.7 5.9E-18 2E-22 120.4 8.1 81 136-216 13-93 (105)
72 4a8x_A RNA-binding protein wit 99.7 5E-18 1.7E-22 116.8 7.4 81 138-218 4-85 (88)
73 3sde_A Paraspeckle component 1 99.7 1.3E-17 4.5E-22 137.5 11.2 94 138-237 22-155 (261)
74 3n9u_C Cleavage and polyadenyl 99.7 1E-17 3.5E-22 127.8 9.6 79 138-216 55-135 (156)
75 2dng_A Eukaryotic translation 99.7 1.8E-17 6.1E-22 117.6 10.2 79 136-216 13-91 (103)
76 2cpe_A RNA-binding protein EWS 99.7 1.6E-17 5.4E-22 119.8 9.8 82 135-216 12-101 (113)
77 2mss_A Protein (musashi1); RNA 99.7 2.6E-18 9E-23 114.7 5.2 75 140-215 1-75 (75)
78 2ek1_A RNA-binding protein 12; 99.7 7.7E-18 2.6E-22 117.6 7.6 79 138-216 15-93 (95)
79 2dgp_A Bruno-like 4, RNA bindi 99.7 6.5E-18 2.2E-22 120.4 7.4 83 134-216 9-94 (106)
80 3tyt_A Heterogeneous nuclear r 99.7 1.9E-17 6.6E-22 131.9 10.8 71 138-213 4-75 (205)
81 3ulh_A THO complex subunit 4; 99.7 1.9E-17 6.5E-22 118.2 9.8 79 136-215 27-105 (107)
82 1s79_A Lupus LA protein; RRM, 99.7 3.5E-18 1.2E-22 121.4 5.8 76 137-214 10-85 (103)
83 2cph_A RNA binding motif prote 99.7 1.3E-17 4.4E-22 119.0 8.5 81 136-216 13-95 (107)
84 2kxn_B Transformer-2 protein h 99.7 1.2E-17 4.2E-22 123.4 8.7 82 136-217 44-125 (129)
85 4fxv_A ELAV-like protein 1; RN 99.7 1.1E-17 3.8E-22 117.9 7.8 86 16-132 12-98 (99)
86 2dh8_A DAZ-associated protein 99.7 2.7E-17 9.2E-22 117.0 9.9 80 136-216 14-93 (105)
87 2dhg_A TRNA selenocysteine ass 99.7 1.7E-17 6E-22 117.7 8.8 80 136-216 7-88 (104)
88 1wi8_A EIF-4B, eukaryotic tran 99.7 2E-17 6.8E-22 117.6 9.0 79 136-216 13-92 (104)
89 1x5s_A Cold-inducible RNA-bind 99.7 7.3E-18 2.5E-22 119.3 6.6 79 137-215 11-89 (102)
90 2cqd_A RNA-binding region cont 99.7 2.5E-17 8.4E-22 119.4 9.6 81 134-215 13-93 (116)
91 2cqp_A RNA-binding protein 12; 99.7 8.6E-18 2.9E-22 118.1 6.9 80 137-216 14-93 (98)
92 2dnh_A Bruno-like 5, RNA bindi 99.7 2.8E-17 9.6E-22 116.9 9.1 79 137-216 14-95 (105)
93 2dgv_A HnRNP M, heterogeneous 99.7 2.6E-17 8.8E-22 114.2 8.7 80 136-217 6-85 (92)
94 2fy1_A RNA-binding motif prote 99.7 1.7E-17 5.9E-22 120.3 8.1 79 137-216 6-84 (116)
95 1uaw_A Mouse-musashi-1; RNP-ty 99.7 4.5E-18 1.6E-22 114.0 4.5 75 139-214 1-75 (77)
96 2hgl_A HNRPF protein, heteroge 99.7 2.6E-17 9E-22 122.5 9.0 78 136-215 42-122 (136)
97 1p1t_A Cleavage stimulation fa 99.7 1E-17 3.5E-22 118.9 6.5 79 138-216 8-86 (104)
98 2krb_A Eukaryotic translation 99.7 7.7E-18 2.6E-22 114.2 5.6 72 139-212 2-80 (81)
99 2dgw_A Probable RNA-binding pr 99.7 3.9E-17 1.3E-21 113.1 9.1 78 136-216 8-85 (91)
100 2cqi_A Nucleolysin TIAR; RNA r 99.7 6.8E-17 2.3E-21 114.5 10.5 80 135-216 12-91 (103)
101 1x5o_A RNA binding motif, sing 99.7 3.6E-17 1.2E-21 118.1 9.2 79 137-216 24-110 (114)
102 2wbr_A GW182, gawky, LD47780P; 99.7 3E-17 1E-21 111.6 8.2 72 138-215 7-78 (89)
103 2cq4_A RNA binding motif prote 99.7 1.8E-17 6.3E-22 119.7 7.5 77 138-215 25-101 (114)
104 2d9p_A Polyadenylate-binding p 99.7 3E-17 1E-21 116.3 8.5 78 137-216 14-91 (103)
105 2do0_A HnRNP M, heterogeneous 99.7 6.8E-17 2.3E-21 116.6 10.5 80 136-216 13-92 (114)
106 2cq3_A RNA-binding protein 9; 99.7 1E-16 3.5E-21 113.6 11.2 80 135-216 12-91 (103)
107 1sjq_A Polypyrimidine tract-bi 99.7 4.8E-17 1.7E-21 115.2 9.4 74 137-216 15-90 (105)
108 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 5E-17 1.7E-21 121.4 9.8 78 137-214 62-139 (140)
109 2m2b_A RNA-binding protein 10; 99.7 6.4E-18 2.2E-22 125.2 4.8 80 136-216 21-106 (131)
110 1u6f_A Tcubp1, RNA-binding pro 99.7 4.2E-17 1.4E-21 121.9 9.4 79 137-215 41-119 (139)
111 2jwn_A Embryonic polyadenylate 99.7 3.5E-17 1.2E-21 119.9 8.7 78 138-216 36-113 (124)
112 2cqg_A TDP-43, TAR DNA-binding 99.7 1.3E-16 4.6E-21 113.0 11.3 79 136-216 13-91 (103)
113 2dgx_A KIAA0430 protein; RRM d 99.7 5.7E-17 2E-21 113.5 9.1 77 137-216 8-88 (96)
114 2nlw_A Eukaryotic translation 99.7 3.1E-17 1E-21 116.9 7.5 77 138-216 15-98 (105)
115 3ex7_B RNA-binding protein 8A; 99.7 2.8E-17 9.5E-22 120.8 7.3 80 136-215 20-99 (126)
116 2ki2_A SS-DNA binding protein 99.7 4.6E-18 1.6E-22 117.6 2.8 77 139-216 2-78 (90)
117 1h2v_Z 20 kDa nuclear CAP bind 99.7 9.8E-17 3.3E-21 122.3 10.4 79 137-215 38-116 (156)
118 2rs2_A Musashi-1, RNA-binding 99.7 5.1E-17 1.8E-21 116.5 8.3 79 137-216 24-102 (109)
119 1x4b_A Heterogeneous nuclear r 99.7 6.6E-17 2.3E-21 117.1 9.0 78 138-216 27-104 (116)
120 1wez_A HnRNP H', FTP-3, hetero 99.7 2.2E-17 7.4E-22 117.1 6.2 76 137-215 14-89 (102)
121 3pgw_A U1-A; protein-RNA compl 99.7 1.8E-16 6.1E-21 131.9 12.7 75 136-213 7-85 (282)
122 2cpi_A CCR4-NOT transcription 99.7 5.3E-17 1.8E-21 116.8 8.1 79 138-216 15-99 (111)
123 1x4a_A Splicing factor, argini 99.7 1.8E-16 6.2E-21 113.5 10.7 78 136-216 20-97 (109)
124 2j76_E EIF-4B, EIF4B, eukaryot 99.7 1.7E-17 5.7E-22 117.2 5.1 78 137-216 18-96 (100)
125 2db1_A Heterogeneous nuclear r 99.7 1.5E-16 5.1E-21 115.7 10.1 78 136-215 15-95 (118)
126 2g4b_A Splicing factor U2AF 65 99.7 1.9E-16 6.5E-21 121.9 11.2 93 138-237 4-154 (172)
127 2kt5_A RNA and export factor-b 99.7 9.2E-17 3.1E-21 117.7 8.5 79 137-216 34-112 (124)
128 1iqt_A AUF1, heterogeneous nuc 99.7 1E-17 3.5E-22 111.8 3.0 74 140-214 1-74 (75)
129 2err_A Ataxin-2-binding protei 99.7 1.3E-16 4.6E-21 114.3 8.9 78 137-216 28-105 (109)
130 2cpy_A RNA-binding protein 12; 99.7 5.3E-17 1.8E-21 117.3 6.7 77 137-215 14-91 (114)
131 3r27_A HnRNP L, heterogeneous 99.7 1.1E-16 3.9E-21 112.3 8.1 75 136-216 19-95 (100)
132 2dnn_A RNA-binding protein 12; 99.7 1.3E-16 4.4E-21 114.3 8.3 75 138-215 16-90 (109)
133 1wg5_A Heterogeneous nuclear r 99.7 6.1E-17 2.1E-21 115.1 6.5 77 137-215 14-91 (104)
134 2j8a_A Histone-lysine N-methyl 99.7 9.3E-17 3.2E-21 116.4 7.4 77 139-215 3-93 (136)
135 1x4d_A Matrin 3; structural ge 99.7 6.2E-17 2.1E-21 114.4 6.1 74 137-216 14-90 (102)
136 2dis_A Unnamed protein product 99.7 8.7E-17 3E-21 115.1 6.7 80 137-216 7-90 (109)
137 2adc_A Polypyrimidine tract-bi 99.7 2.3E-16 7.7E-21 127.7 9.9 72 137-213 33-105 (229)
138 2jvr_A Nucleolar protein 3; RN 99.7 1.3E-16 4.5E-21 114.6 7.2 76 137-216 27-103 (111)
139 2cq1_A PTB-like protein L; RRM 99.7 4.8E-16 1.6E-20 109.8 9.8 75 136-216 13-89 (101)
140 1x4c_A Splicing factor, argini 99.7 5.6E-16 1.9E-20 110.8 10.2 75 135-216 12-91 (108)
141 2yh0_A Splicing factor U2AF 65 99.7 3.1E-16 1.1E-20 123.4 9.6 70 138-214 4-84 (198)
142 2fc9_A NCL protein; structure 99.7 3.4E-16 1.2E-20 110.5 8.8 77 136-216 13-89 (101)
143 2hgn_A Heterogeneous nuclear r 99.7 2.3E-17 8E-22 123.2 2.4 116 97-216 2-121 (139)
144 1qm9_A Polypyrimidine tract-bi 99.7 1.5E-16 5.2E-21 125.5 7.2 71 138-213 3-74 (198)
145 2ytc_A PRE-mRNA-splicing facto 99.7 4.7E-16 1.6E-20 106.1 8.7 76 134-215 8-84 (85)
146 3q2s_C Cleavage and polyadenyl 99.7 1.3E-16 4.5E-21 129.1 6.9 78 138-215 68-147 (229)
147 2lmi_A GRSF-1, G-rich sequence 99.6 6.7E-17 2.3E-21 115.5 4.4 78 136-215 9-89 (107)
148 1wf1_A RNA-binding protein RAL 99.6 3.8E-16 1.3E-20 112.0 8.3 88 121-216 6-98 (110)
149 2a3j_A U1 small nuclear ribonu 99.6 2E-16 7E-21 116.3 7.0 78 136-216 27-108 (127)
150 2xs2_A Deleted in azoospermia- 99.6 1.5E-16 5.3E-21 112.5 6.1 74 137-213 8-81 (102)
151 1wel_A RNA-binding protein 12; 99.6 4.9E-17 1.7E-21 119.3 3.5 78 137-215 24-101 (124)
152 3s8s_A Histone-lysine N-methyl 99.6 4.2E-16 1.4E-20 111.9 8.3 81 22-133 5-86 (110)
153 1fjc_A Nucleolin RBD2, protein 99.6 1.1E-16 3.6E-21 112.0 4.7 82 130-216 8-89 (96)
154 3lqv_A PRE-mRNA branch site pr 99.6 4.2E-16 1.4E-20 112.6 7.8 77 137-216 7-83 (115)
155 2la4_A Nuclear and cytoplasmic 99.6 9.7E-16 3.3E-20 108.1 9.2 73 138-216 27-99 (101)
156 1fj7_A Nucleolin RBD1, protein 99.6 2.8E-17 9.5E-22 116.1 1.1 78 137-216 16-93 (101)
157 2ad9_A Polypyrimidine tract-bi 99.6 4.5E-16 1.5E-20 112.9 7.5 74 137-216 30-105 (119)
158 2fc8_A NCL protein; structure 99.6 1.4E-15 4.7E-20 107.5 9.6 78 136-216 13-90 (102)
159 1nu4_A U1A RNA binding domain; 99.6 3E-16 1E-20 109.8 6.1 77 137-216 7-87 (97)
160 2dnq_A RNA-binding protein 4B; 99.6 1.1E-15 3.9E-20 105.5 8.9 72 137-216 7-78 (90)
161 2dha_A FLJ20171 protein; RRM d 99.6 2.9E-16 9.9E-21 114.8 6.1 75 138-214 23-101 (123)
162 2voo_A Lupus LA protein; RNA-b 99.6 2.8E-15 9.6E-20 118.2 12.2 109 105-215 63-184 (193)
163 2jvo_A Nucleolar protein 3; nu 99.6 1.4E-15 4.6E-20 108.9 9.5 73 137-217 30-102 (108)
164 2lcw_A RNA-binding protein FUS 99.4 2.2E-17 7.5E-22 119.7 0.0 80 137-216 6-93 (116)
165 1x4g_A Nucleolysin TIAR; struc 99.6 1.3E-15 4.5E-20 109.0 8.9 74 137-216 24-97 (109)
166 1why_A Hypothetical protein ri 99.6 7.2E-16 2.4E-20 108.0 7.3 74 137-216 16-91 (97)
167 1wex_A Hypothetical protein (r 99.6 5.8E-16 2E-20 110.0 6.8 75 136-216 13-89 (104)
168 2cpx_A Hypothetical protein FL 99.6 1.3E-16 4.4E-21 115.3 3.3 80 137-216 24-103 (115)
169 2xnq_A Nuclear polyadenylated 99.6 2.4E-15 8E-20 105.5 9.7 72 137-216 21-93 (97)
170 2cpj_A Non-POU domain-containi 99.6 8.2E-16 2.8E-20 108.1 7.3 74 137-216 14-87 (99)
171 2dgt_A RNA-binding protein 30; 99.6 2.8E-15 9.4E-20 104.0 9.7 74 135-216 7-80 (92)
172 3ns6_A Eukaryotic translation 99.6 7.5E-16 2.6E-20 108.6 6.7 86 23-133 6-93 (100)
173 2hvz_A Splicing factor, argini 99.6 3.5E-16 1.2E-20 110.4 4.9 73 139-216 1-73 (101)
174 2e5j_A Methenyltetrahydrofolat 99.6 1.1E-15 3.9E-20 107.0 7.2 76 137-217 18-93 (97)
175 3lqv_A PRE-mRNA branch site pr 99.6 4.9E-16 1.7E-20 112.3 5.4 102 22-164 7-109 (115)
176 2hgm_A HNRPF protein, heteroge 99.6 8E-16 2.7E-20 112.8 6.5 76 137-215 41-118 (126)
177 2dnp_A RNA-binding protein 14; 99.6 2.7E-15 9.2E-20 103.6 8.6 73 136-216 7-79 (90)
178 2f3j_A RNA and export factor b 99.6 9E-16 3.1E-20 119.4 6.8 80 136-216 86-165 (177)
179 3bs9_A Nucleolysin TIA-1 isofo 99.6 1.5E-15 5.1E-20 104.0 7.2 81 22-133 5-86 (87)
180 2e5g_A U6 snRNA-specific termi 99.6 6.6E-15 2.3E-19 102.5 10.2 74 137-216 7-80 (94)
181 3md1_A Nuclear and cytoplasmic 99.6 3E-15 1E-19 101.6 8.2 80 24-134 2-82 (83)
182 2dnl_A Cytoplasmic polyadenyla 99.6 1.9E-15 6.6E-20 109.1 7.4 66 137-203 7-78 (114)
183 2lxi_A RNA-binding protein 10; 99.6 5.1E-16 1.7E-20 107.6 4.2 68 52-136 16-86 (91)
184 2dgu_A Heterogeneous nuclear r 99.6 3.9E-15 1.3E-19 105.4 8.8 72 137-216 10-81 (103)
185 2jrs_A RNA-binding protein 39; 99.6 2.9E-15 9.9E-20 107.1 8.1 90 14-134 17-107 (108)
186 2cpd_A Apobec-1 stimulating pr 99.6 1.1E-14 3.6E-19 102.4 10.8 72 137-216 14-87 (99)
187 1x4f_A Matrin 3; structural ge 99.6 5.3E-16 1.8E-20 111.3 4.1 74 137-216 24-100 (112)
188 1whx_A Hypothetical protein ri 99.6 8.4E-16 2.9E-20 110.5 5.2 73 137-215 9-81 (111)
189 3p5t_L Cleavage and polyadenyl 99.6 6E-16 2.1E-20 106.9 4.1 80 25-135 3-85 (90)
190 3egn_A RNA-binding protein 40; 99.6 7.3E-16 2.5E-20 115.7 4.6 78 136-216 43-128 (143)
191 2dnz_A Probable RNA-binding pr 99.6 6E-15 2.1E-19 102.7 8.9 84 22-136 4-88 (95)
192 1wg1_A KIAA1579 protein, homol 99.6 3.2E-15 1.1E-19 102.8 7.4 72 137-215 4-75 (88)
193 2dgs_A DAZ-associated protein 99.6 6.6E-15 2.3E-19 103.4 8.8 84 22-136 9-92 (99)
194 2x1f_A MRNA 3'-END-processing 99.6 5.1E-15 1.8E-19 103.4 8.2 82 23-135 2-84 (96)
195 3ucg_A Polyadenylate-binding p 99.6 2.1E-15 7.2E-20 103.7 6.0 85 19-134 2-86 (89)
196 1whw_A Hypothetical protein ri 99.6 7.3E-15 2.5E-19 103.1 9.0 85 21-136 6-91 (99)
197 1p27_B RNA-binding protein 8A; 99.6 4.1E-15 1.4E-19 105.8 7.5 84 21-135 21-105 (106)
198 2cqh_A IGF-II mRNA-binding pro 99.6 2.7E-15 9.1E-20 104.2 6.4 73 137-216 7-81 (93)
199 2cq2_A Hypothetical protein LO 99.6 4.6E-15 1.6E-19 106.5 7.7 72 137-214 24-102 (114)
200 2cq0_A Eukaryotic translation 99.6 6.4E-15 2.2E-19 104.2 8.3 85 21-136 13-98 (103)
201 3d2w_A TAR DNA-binding protein 99.6 7.8E-15 2.7E-19 101.2 8.4 71 137-216 10-82 (89)
202 2lkz_A RNA-binding protein 5; 99.6 2.5E-15 8.4E-20 104.9 5.9 77 25-132 11-94 (95)
203 2pe8_A Splicing factor 45; RRM 99.6 1.4E-14 4.8E-19 103.0 9.9 79 137-215 7-91 (105)
204 2kvi_A Nuclear polyadenylated 99.6 2.5E-15 8.5E-20 105.1 5.4 71 137-215 9-80 (96)
205 2hzc_A Splicing factor U2AF 65 99.6 6.5E-15 2.2E-19 100.8 7.4 70 137-213 5-85 (87)
206 1x5u_A Splicing factor 3B subu 99.6 7.8E-15 2.7E-19 104.1 8.0 84 22-136 14-98 (105)
207 2cqb_A Peptidyl-prolyl CIS-tra 99.6 5.5E-15 1.9E-19 104.4 7.1 86 20-136 9-95 (102)
208 3mdf_A Peptidyl-prolyl CIS-tra 99.6 6.4E-15 2.2E-19 100.4 7.1 79 22-131 6-85 (85)
209 1x5p_A Negative elongation fac 99.6 2.4E-14 8E-19 100.2 10.1 72 137-216 14-85 (97)
210 2dnm_A SRP46 splicing factor; 99.6 8.8E-15 3E-19 103.5 7.9 84 22-136 12-96 (103)
211 4a8x_A RNA-binding protein wit 99.6 5.6E-15 1.9E-19 101.3 6.6 84 21-135 2-87 (88)
212 1s79_A Lupus LA protein; RRM, 99.6 4.5E-15 1.6E-19 105.2 6.3 80 21-132 9-88 (103)
213 2mss_A Protein (musashi1); RNA 99.6 3.3E-15 1.1E-19 99.5 5.2 62 52-130 14-75 (75)
214 1x5t_A Splicing factor 3B subu 99.6 5.2E-15 1.8E-19 103.2 6.5 84 22-136 4-89 (96)
215 1oo0_B CG8781-PA, drosophila Y 99.6 9.4E-15 3.2E-19 104.6 7.9 84 21-135 24-108 (110)
216 2do4_A Squamous cell carcinoma 99.6 1.1E-14 3.9E-19 102.4 8.2 83 21-135 15-98 (100)
217 2e5h_A Zinc finger CCHC-type a 99.6 1.2E-14 3.9E-19 101.1 8.1 80 21-131 14-94 (94)
218 3beg_B Splicing factor, argini 99.6 2.6E-15 8.8E-20 108.6 4.9 67 136-209 14-80 (115)
219 3zzy_A Polypyrimidine tract-bi 99.6 2.9E-14 9.9E-19 104.7 10.4 74 138-216 28-104 (130)
220 2dgo_A Cytotoxic granule-assoc 99.5 1.2E-14 4.3E-19 104.8 8.2 85 21-136 13-98 (115)
221 2e44_A Insulin-like growth fac 99.5 5.3E-15 1.8E-19 103.3 5.9 76 137-216 14-90 (96)
222 1x4h_A RNA-binding protein 28; 99.5 1.6E-14 5.5E-19 103.5 8.4 85 21-136 13-104 (111)
223 3s7r_A Heterogeneous nuclear r 99.5 1.1E-14 3.9E-19 99.6 7.2 79 21-130 9-87 (87)
224 2rs2_A Musashi-1, RNA-binding 99.5 1.8E-14 6.2E-19 103.1 8.5 84 21-135 23-106 (109)
225 2cpz_A CUG triplet repeat RNA- 99.5 9.1E-15 3.1E-19 105.5 6.9 84 22-136 24-108 (115)
226 2jwn_A Embryonic polyadenylate 99.5 1.6E-14 5.6E-19 105.5 8.4 67 52-135 51-117 (124)
227 1x5s_A Cold-inducible RNA-bind 99.5 8.7E-15 3E-19 103.3 6.5 86 20-136 9-95 (102)
228 2kxn_B Transformer-2 protein h 99.5 1.5E-14 5.1E-19 106.7 7.9 82 23-135 46-128 (129)
229 2hvz_A Splicing factor, argini 99.5 2.7E-15 9.1E-20 105.8 3.7 74 52-147 15-100 (101)
230 2cpi_A CCR4-NOT transcription 99.5 2.2E-14 7.5E-19 103.0 8.4 86 18-134 10-102 (111)
231 2cph_A RNA binding motif prote 99.5 2.2E-14 7.6E-19 102.0 8.4 86 20-136 12-100 (107)
232 2cqc_A Arginine/serine-rich sp 99.5 1.3E-14 4.5E-19 100.9 7.0 80 22-132 14-94 (95)
233 2cpf_A RNA binding motif prote 99.5 1.2E-14 4.1E-19 101.8 6.6 84 22-136 4-91 (98)
234 2wbr_A GW182, gawky, LD47780P; 99.5 1.2E-14 4.1E-19 98.8 6.0 72 22-130 6-78 (89)
235 2d9p_A Polyadenylate-binding p 99.5 2.8E-14 9.5E-19 100.9 8.1 83 21-136 13-96 (103)
236 2dgp_A Bruno-like 4, RNA bindi 99.5 1.6E-14 5.5E-19 102.7 6.8 85 21-136 11-99 (106)
237 3n9u_C Cleavage and polyadenyl 99.5 9.9E-15 3.4E-19 111.2 6.1 81 22-133 54-137 (156)
238 2dnh_A Bruno-like 5, RNA bindi 99.5 2.9E-14 9.9E-19 101.1 8.1 83 22-136 14-100 (105)
239 2fy1_A RNA-binding motif prote 99.5 2.2E-14 7.6E-19 103.8 7.6 82 22-135 6-88 (116)
240 1sjr_A Polypyrimidine tract-bi 99.5 1.8E-14 6.3E-19 109.6 7.4 74 138-215 46-121 (164)
241 2la6_A RNA-binding protein FUS 99.5 1.9E-14 6.5E-19 101.1 6.9 80 21-131 11-99 (99)
242 2j76_E EIF-4B, EIF4B, eukaryot 99.5 1.8E-14 6E-19 101.5 6.5 83 20-134 16-99 (100)
243 1p1t_A Cleavage stimulation fa 99.5 1.3E-14 4.5E-19 102.7 5.8 81 23-134 8-89 (104)
244 1x4e_A RNA binding motif, sing 99.5 9.4E-15 3.2E-19 99.6 4.8 79 22-131 4-83 (85)
245 2dgx_A KIAA0430 protein; RRM d 99.5 3.3E-14 1.1E-18 99.3 7.6 82 20-135 6-92 (96)
246 2khc_A Testis-specific RNP-typ 99.5 2E-14 6.9E-19 104.2 6.7 79 22-131 39-118 (118)
247 2div_A TRNA selenocysteine ass 99.5 1.5E-14 5.2E-19 101.5 5.8 82 22-134 8-95 (99)
248 2cpe_A RNA-binding protein EWS 99.5 3.2E-14 1.1E-18 102.3 7.5 86 20-136 12-106 (113)
249 2ki2_A SS-DNA binding protein 99.5 5.7E-15 1.9E-19 101.9 3.4 80 24-135 2-82 (90)
250 1wi8_A EIF-4B, eukaryotic tran 99.5 4.9E-14 1.7E-18 99.8 8.2 83 22-136 14-97 (104)
251 2diu_A KIAA0430 protein; struc 99.5 3.5E-14 1.2E-18 97.4 7.1 71 138-218 8-84 (96)
252 1u6f_A Tcubp1, RNA-binding pro 99.5 2.6E-14 9.1E-19 106.5 7.1 88 19-137 38-126 (139)
253 2dng_A Eukaryotic translation 99.5 4.8E-14 1.6E-18 99.7 8.1 83 22-136 14-96 (103)
254 2dh8_A DAZ-associated protein 99.5 1.9E-14 6.5E-19 102.1 5.8 85 21-136 14-98 (105)
255 2ywk_A Putative RNA-binding pr 99.5 3.4E-14 1.2E-18 98.9 6.9 79 22-132 15-94 (95)
256 3ex7_B RNA-binding protein 8A; 99.5 4.1E-14 1.4E-18 103.7 7.7 85 21-136 20-105 (126)
257 1x4b_A Heterogeneous nuclear r 99.5 4.3E-14 1.5E-18 102.2 7.3 84 22-136 26-109 (116)
258 2kn4_A Immunoglobulin G-bindin 99.5 3.6E-14 1.2E-18 108.1 7.1 84 22-136 69-153 (158)
259 2cqd_A RNA-binding region cont 99.5 5.8E-14 2E-18 101.4 7.7 82 21-134 15-97 (116)
260 2cqp_A RNA-binding protein 12; 99.5 2.4E-14 8.3E-19 100.2 5.3 82 22-134 14-96 (98)
261 2e5i_A Heterogeneous nuclear r 99.5 1.2E-13 4.1E-18 100.8 9.1 72 139-216 26-100 (124)
262 2cq4_A RNA binding motif prote 99.5 2.8E-14 9.4E-19 102.8 5.6 82 21-133 23-104 (114)
263 1uaw_A Mouse-musashi-1; RNP-ty 99.5 2.1E-14 7.1E-19 95.9 4.5 61 52-130 15-76 (77)
264 1wg5_A Heterogeneous nuclear r 99.5 7.7E-14 2.6E-18 98.9 7.8 82 21-134 13-95 (104)
265 3ulh_A THO complex subunit 4; 99.5 6.3E-14 2.2E-18 99.7 7.3 78 22-131 28-106 (107)
266 2dhg_A TRNA selenocysteine ass 99.5 4.1E-14 1.4E-18 100.1 6.2 83 22-136 8-93 (104)
267 2cq3_A RNA-binding protein 9; 99.5 1.4E-13 4.9E-18 97.2 9.0 83 21-136 13-96 (103)
268 2krb_A Eukaryotic translation 99.5 3.4E-14 1.2E-18 96.0 5.4 77 24-127 2-80 (81)
269 1wf0_A TDP-43, TAR DNA-binding 99.5 2.7E-14 9.2E-19 98.1 4.9 70 138-216 5-76 (88)
270 2nlw_A Eukaryotic translation 99.5 5.5E-14 1.9E-18 99.8 6.5 85 23-134 15-101 (105)
271 2dis_A Unnamed protein product 99.5 7.5E-14 2.6E-18 99.6 7.2 85 22-136 7-95 (109)
272 1wez_A HnRNP H', FTP-3, hetero 99.5 5.7E-14 2E-18 99.3 6.5 82 20-134 12-93 (102)
273 2dgv_A HnRNP M, heterogeneous 99.5 7.1E-14 2.4E-18 96.6 6.9 82 22-136 7-89 (92)
274 2lea_A Serine/arginine-rich sp 99.5 4.5E-14 1.6E-18 104.9 6.3 68 52-136 62-130 (135)
275 2cqi_A Nucleolysin TIAR; RNA r 99.5 8.4E-14 2.9E-18 98.4 7.3 82 22-136 14-96 (103)
276 1sjq_A Polypyrimidine tract-bi 99.5 5.6E-14 1.9E-18 99.4 6.1 83 17-136 10-95 (105)
277 1iqt_A AUF1, heterogeneous nuc 99.5 1.3E-14 4.4E-19 96.5 2.6 62 52-130 14-75 (75)
278 2ek1_A RNA-binding protein 12; 99.5 3.5E-14 1.2E-18 98.8 4.9 79 23-132 15-94 (95)
279 2m2b_A RNA-binding protein 10; 99.5 2E-14 7E-19 106.2 3.8 82 22-135 22-110 (131)
280 2cqg_A TDP-43, TAR DNA-binding 99.5 1.3E-13 4.3E-18 97.5 7.7 83 22-136 14-96 (103)
281 2jvr_A Nucleolar protein 3; RN 99.5 5.2E-14 1.8E-18 100.9 5.7 85 15-134 20-106 (111)
282 2bz2_A Negative elongation fac 99.5 9.2E-14 3.2E-18 101.3 7.1 72 137-216 38-109 (121)
283 2kt5_A RNA and export factor-b 99.5 1.2E-13 4E-18 101.0 7.6 82 22-135 34-116 (124)
284 1h2v_Z 20 kDa nuclear CAP bind 99.5 1.1E-13 3.9E-18 105.1 7.8 67 52-135 54-121 (156)
285 2do0_A HnRNP M, heterogeneous 99.5 1.6E-13 5.6E-18 98.7 8.0 81 23-135 15-96 (114)
286 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.5 1E-13 3.5E-18 103.2 7.1 79 21-130 61-140 (140)
287 1x4a_A Splicing factor, argini 99.5 2.2E-13 7.6E-18 97.3 8.3 82 21-136 20-102 (109)
288 2a3j_A U1 small nuclear ribonu 99.5 1.2E-13 4.2E-18 101.4 7.1 83 22-134 28-111 (127)
289 2cpy_A RNA-binding protein 12; 99.5 4.9E-14 1.7E-18 101.6 4.9 82 20-133 12-94 (114)
290 2pe8_A Splicing factor 45; RRM 99.5 1.7E-13 5.9E-18 97.3 7.5 66 50-132 26-93 (105)
291 1rk8_A CG8781-PA, CG8781-PA pr 99.4 1.2E-13 4E-18 106.1 7.1 83 22-135 71-154 (165)
292 1x4d_A Matrin 3; structural ge 99.4 1.1E-13 3.8E-18 97.6 6.2 76 22-134 14-93 (102)
293 2err_A Ataxin-2-binding protei 99.4 1.3E-13 4.6E-18 98.5 6.7 81 20-133 26-107 (109)
294 1x5o_A RNA binding motif, sing 99.4 2.8E-13 9.5E-18 97.5 8.3 81 21-133 23-112 (114)
295 3r27_A HnRNP L, heterogeneous 99.4 1.6E-13 5.4E-18 96.2 6.5 76 22-134 20-98 (100)
296 1jmt_A Splicing factor U2AF 35 99.4 4.2E-14 1.4E-18 100.3 3.5 72 143-215 20-103 (104)
297 3v4m_A Splicing factor U2AF 65 99.4 2.6E-13 8.8E-18 96.4 7.6 78 137-214 4-93 (105)
298 1fj7_A Nucleolin RBD1, protein 99.4 2.8E-14 9.4E-19 100.6 2.2 83 22-136 16-98 (101)
299 2dgw_A Probable RNA-binding pr 99.4 2.2E-13 7.5E-18 94.0 6.8 82 21-135 8-89 (91)
300 1x5p_A Negative elongation fac 99.4 4.9E-13 1.7E-17 93.4 8.3 76 22-136 14-90 (97)
301 2hgl_A HNRPF protein, heteroge 99.4 7.9E-14 2.7E-18 103.6 4.4 80 22-133 43-125 (136)
302 3u1l_A PRE-mRNA-splicing facto 99.4 1.7E-13 5.7E-18 110.9 6.1 74 137-216 133-227 (240)
303 3q2s_C Cleavage and polyadenyl 99.4 1.5E-13 5.1E-18 111.1 5.8 81 22-133 67-150 (229)
304 1wel_A RNA-binding protein 12; 99.4 4.7E-14 1.6E-18 103.2 2.5 81 22-133 24-104 (124)
305 2db1_A Heterogeneous nuclear r 99.4 1.7E-13 5.7E-18 99.5 5.4 80 22-133 16-98 (118)
306 2cpj_A Non-POU domain-containi 99.4 3.4E-13 1.2E-17 94.6 6.8 78 21-135 13-91 (99)
307 2dnn_A RNA-binding protein 12; 99.4 2.8E-13 9.5E-18 96.8 6.3 77 23-132 16-92 (109)
308 2cq1_A PTB-like protein L; RRM 99.4 7E-13 2.4E-17 93.4 8.2 78 22-136 14-94 (101)
309 2la4_A Nuclear and cytoplasmic 99.4 2.3E-13 8E-18 95.7 5.6 76 21-133 25-101 (101)
310 2fc9_A NCL protein; structure 99.4 7.4E-13 2.5E-17 93.1 8.1 79 22-135 14-93 (101)
311 2ad9_A Polypyrimidine tract-bi 99.4 4.9E-13 1.7E-17 96.8 7.2 78 22-136 30-110 (119)
312 1x4f_A Matrin 3; structural ge 99.4 1.8E-13 6E-18 98.1 4.7 77 22-135 24-104 (112)
313 1whx_A Hypothetical protein ri 99.4 4.2E-13 1.4E-17 96.3 6.6 75 22-133 9-84 (111)
314 3ue2_A Poly(U)-binding-splicin 99.4 8.7E-13 3E-17 95.5 8.3 78 137-214 19-105 (118)
315 2dit_A HIV TAT specific factor 99.4 1.5E-12 5.2E-17 93.4 9.5 75 137-215 14-99 (112)
316 2lmi_A GRSF-1, G-rich sequence 99.4 1.7E-13 5.9E-18 97.6 4.3 81 21-133 9-92 (107)
317 1why_A Hypothetical protein ri 99.4 7.1E-13 2.4E-17 92.6 7.4 77 22-135 16-95 (97)
318 2j8a_A Histone-lysine N-methyl 99.4 2.1E-13 7.2E-18 98.8 4.7 83 24-133 3-96 (136)
319 3v4m_A Splicing factor U2AF 65 99.4 6.4E-13 2.2E-17 94.3 7.0 67 51-132 29-96 (105)
320 1nu4_A U1A RNA binding domain; 99.4 2.7E-13 9.3E-18 94.6 5.0 80 22-135 7-91 (97)
321 2lcw_A RNA-binding protein FUS 99.1 3E-14 1E-18 103.0 0.0 92 22-136 6-98 (116)
322 1wex_A Hypothetical protein (r 99.4 5.2E-13 1.8E-17 94.6 6.4 76 23-135 15-93 (104)
323 2i2y_A Fusion protein consists 99.4 3.3E-13 1.1E-17 101.9 5.5 61 52-134 88-149 (150)
324 1jmt_A Splicing factor U2AF 35 99.4 5.8E-13 2E-17 94.4 6.4 61 52-130 41-103 (104)
325 2xnq_A Nuclear polyadenylated 99.4 9.1E-13 3.1E-17 92.2 7.3 74 22-134 21-96 (97)
326 2xs2_A Deleted in azoospermia- 99.4 2.1E-13 7.1E-18 96.2 3.9 80 22-134 8-87 (102)
327 2cpx_A Hypothetical protein FL 99.4 1.4E-13 4.7E-18 99.2 3.0 84 22-136 24-108 (115)
328 2fc8_A NCL protein; structure 99.4 1.3E-12 4.4E-17 92.0 7.7 83 20-136 12-95 (102)
329 1x4c_A Splicing factor, argini 99.4 9.7E-13 3.3E-17 93.8 7.1 76 22-135 14-95 (108)
330 2kvi_A Nuclear polyadenylated 99.4 6.4E-13 2.2E-17 92.7 5.9 75 22-135 9-85 (96)
331 2cq2_A Hypothetical protein LO 99.4 7.2E-13 2.5E-17 95.0 6.3 75 23-134 25-107 (114)
332 2hgn_A Heterogeneous nuclear r 99.4 1.9E-13 6.5E-18 101.9 3.4 80 22-134 45-124 (139)
333 2dnq_A RNA-binding protein 4B; 99.4 1.6E-12 5.5E-17 89.5 7.8 76 22-136 7-83 (90)
334 2ytc_A PRE-mRNA-splicing facto 99.4 7.8E-13 2.7E-17 89.9 6.1 73 22-131 11-85 (85)
335 2e5j_A Methenyltetrahydrofolat 99.4 5.6E-13 1.9E-17 93.1 5.2 77 22-134 18-95 (97)
336 2dgt_A RNA-binding protein 30; 99.4 1.6E-12 5.5E-17 89.8 7.5 76 21-135 8-84 (92)
337 2dnp_A RNA-binding protein 14; 99.4 1.2E-12 4.2E-17 90.0 6.7 77 21-136 7-84 (90)
338 1x4g_A Nucleolysin TIAR; struc 99.4 1E-12 3.5E-17 93.8 6.4 78 21-135 23-101 (109)
339 2hgm_A HNRPF protein, heteroge 99.4 5.4E-13 1.8E-17 97.7 5.1 79 22-133 41-121 (126)
340 2jvo_A Nucleolar protein 3; nu 99.4 1.5E-12 5.3E-17 92.8 7.2 77 20-135 28-105 (108)
341 2f3j_A RNA and export factor b 99.3 9.8E-13 3.3E-17 102.2 6.1 81 22-134 87-168 (177)
342 1fjc_A Nucleolin RBD2, protein 99.3 8.8E-13 3E-17 91.8 5.3 79 21-135 14-93 (96)
343 2dgu_A Heterogeneous nuclear r 99.3 1.7E-12 5.7E-17 91.7 6.6 76 22-136 10-86 (103)
344 2bz2_A Negative elongation fac 99.3 2E-12 6.9E-17 94.1 6.8 61 52-135 52-113 (121)
345 2dha_A FLJ20171 protein; RRM d 99.3 3.3E-13 1.1E-17 98.5 2.6 79 22-132 22-104 (123)
346 2cpd_A Apobec-1 stimulating pr 99.3 4.1E-12 1.4E-16 89.0 8.1 75 22-135 14-91 (99)
347 3ue2_A Poly(U)-binding-splicin 99.3 2.1E-12 7.2E-17 93.5 6.5 69 50-131 38-107 (118)
348 1sjr_A Polypyrimidine tract-bi 99.3 1.6E-12 5.3E-17 99.0 6.0 76 24-134 47-125 (164)
349 3zzy_A Polypyrimidine tract-bi 99.3 3.7E-12 1.2E-16 93.4 7.6 75 24-134 29-107 (130)
350 2dit_A HIV TAT specific factor 99.3 4.7E-12 1.6E-16 90.8 7.6 64 50-134 39-103 (112)
351 1wf1_A RNA-binding protein RAL 99.3 1.7E-12 5.8E-17 92.8 5.2 74 23-135 27-102 (110)
352 2diu_A KIAA0430 protein; struc 99.3 2.5E-12 8.5E-17 88.2 5.6 74 25-135 11-86 (96)
353 2cqh_A IGF-II mRNA-binding pro 99.3 1.7E-12 5.9E-17 89.8 4.9 77 22-136 7-86 (93)
354 3egn_A RNA-binding protein 40; 99.3 7.5E-13 2.6E-17 99.1 3.0 88 22-135 44-132 (143)
355 2dnl_A Cytoplasmic polyadenyla 99.3 6.3E-12 2.2E-16 90.4 7.5 77 22-132 7-87 (114)
356 3pgw_S U1-70K; protein-RNA com 99.3 4.1E-12 1.4E-16 111.9 7.3 81 24-135 103-184 (437)
357 1wg1_A KIAA1579 protein, homol 99.3 3.2E-12 1.1E-16 87.6 5.2 74 22-133 4-78 (88)
358 2e5g_A U6 snRNA-specific termi 99.3 1E-11 3.4E-16 86.1 7.4 78 22-135 7-84 (94)
359 2e5i_A Heterogeneous nuclear r 99.3 1E-11 3.5E-16 90.5 7.2 73 25-134 27-103 (124)
360 2d9o_A DNAJ (HSP40) homolog, s 99.3 1.2E-11 4.1E-16 86.8 7.3 63 49-135 29-92 (100)
361 2e44_A Insulin-like growth fac 99.3 7.2E-12 2.5E-16 87.1 5.9 79 22-134 14-93 (96)
362 3beg_B Splicing factor, argini 99.3 6.8E-12 2.3E-16 90.5 5.9 75 22-134 15-95 (115)
363 2voo_A Lupus LA protein; RNA-b 99.2 9.9E-12 3.4E-16 97.8 7.0 64 52-133 124-187 (193)
364 3d2w_A TAR DNA-binding protein 99.2 1.6E-11 5.4E-16 84.4 7.2 75 22-135 10-86 (89)
365 2hzc_A Splicing factor U2AF 65 99.2 1.2E-11 4.1E-16 84.3 6.2 71 22-129 5-86 (87)
366 3s6e_A RNA-binding protein 39; 99.2 1.5E-11 5E-16 88.5 6.8 60 51-131 31-91 (114)
367 3tht_A Alkylated DNA repair pr 99.2 1.5E-11 5E-16 104.6 7.8 63 137-205 17-81 (345)
368 3u1l_A PRE-mRNA-splicing facto 99.2 1.8E-11 6.1E-16 99.0 7.5 85 22-134 133-230 (240)
369 2d9o_A DNAJ (HSP40) homolog, s 99.2 2.5E-11 8.5E-16 85.2 6.4 79 122-216 10-88 (100)
370 3s6e_A RNA-binding protein 39; 99.2 6.5E-11 2.2E-15 85.1 8.5 74 137-214 6-89 (114)
371 1wf0_A TDP-43, TAR DNA-binding 99.2 2.3E-11 8E-16 83.2 4.9 78 22-136 4-81 (88)
372 1owx_A Lupus LA protein, SS-B, 99.0 5.5E-10 1.9E-14 80.6 5.3 69 137-211 17-89 (121)
373 3tht_A Alkylated DNA repair pr 98.9 1.8E-09 6.1E-14 91.8 7.6 73 22-131 17-97 (345)
374 2dnr_A Synaptojanin-1; RRM dom 98.9 2.4E-09 8.4E-14 72.7 6.4 57 52-133 30-86 (91)
375 3dxb_A Thioredoxin N-terminall 98.9 3.7E-09 1.3E-13 84.6 7.3 67 52-131 144-211 (222)
376 2dnr_A Synaptojanin-1; RRM dom 98.9 5.2E-09 1.8E-13 71.0 6.8 71 138-217 7-85 (91)
377 3dxb_A Thioredoxin N-terminall 98.8 1.3E-08 4.3E-13 81.5 9.5 103 101-214 101-209 (222)
378 1ufw_A Synaptojanin 2; RNP dom 98.7 2.8E-08 9.7E-13 67.8 6.3 70 137-215 14-92 (95)
379 1ufw_A Synaptojanin 2; RNP dom 98.6 3.5E-08 1.2E-12 67.3 4.6 56 52-132 39-94 (95)
380 2l9w_A U4/U6 snRNA-associated- 98.6 2.7E-07 9.3E-12 64.3 8.1 71 137-213 20-95 (117)
381 1owx_A Lupus LA protein, SS-B, 98.3 1.9E-06 6.4E-11 62.0 7.3 75 20-131 15-94 (121)
382 1uw4_A UPF3X; nonsense mediate 97.8 0.00029 9.8E-09 47.8 9.8 82 139-227 2-85 (91)
383 1wey_A Calcipressin 1; structu 97.3 0.00064 2.2E-08 47.0 6.0 72 138-215 5-81 (104)
384 1whv_A Poly(A)-specific ribonu 97.2 0.0014 4.9E-08 44.6 7.1 63 138-209 16-79 (100)
385 2dhx_A Poly (ADP-ribose) polym 97.1 0.0019 6.5E-08 44.5 7.1 88 22-151 7-99 (104)
386 1wwh_A Nucleoporin 35, nucleop 97.1 0.0019 6.3E-08 45.9 6.9 57 52-131 38-95 (119)
387 2l08_A Regulator of nonsense t 97.0 0.0021 7.2E-08 43.9 6.6 83 138-227 9-93 (97)
388 2l9w_A U4/U6 snRNA-associated- 96.8 0.0019 6.6E-08 45.0 5.3 55 52-129 36-96 (117)
389 1wwh_A Nucleoporin 35, nucleop 96.8 0.0032 1.1E-07 44.7 6.2 62 138-207 24-85 (119)
390 2dhx_A Poly (ADP-ribose) polym 96.8 0.012 3.9E-07 40.6 8.7 64 138-209 8-80 (104)
391 3ctr_A Poly(A)-specific ribonu 96.7 0.0047 1.6E-07 42.2 6.0 54 139-201 7-60 (101)
392 3p3d_A Nucleoporin 53; structu 96.4 0.0032 1.1E-07 45.3 4.3 72 52-131 21-97 (132)
393 1wey_A Calcipressin 1; structu 96.1 0.018 6.1E-07 39.7 6.4 59 52-133 25-84 (104)
394 1whv_A Poly(A)-specific ribonu 95.6 0.02 6.7E-07 39.0 4.8 46 46-116 24-70 (100)
395 3ctr_A Poly(A)-specific ribonu 95.5 0.015 5E-07 39.7 4.1 46 46-116 14-60 (101)
396 3pq1_A Poly(A) RNA polymerase; 94.0 0.033 1.1E-06 48.9 3.4 55 138-199 53-107 (464)
397 3p3d_A Nucleoporin 53; structu 93.0 0.084 2.9E-06 37.9 3.5 72 139-212 8-93 (132)
398 3pq1_A Poly(A) RNA polymerase; 92.4 0.049 1.7E-06 47.8 1.9 47 52-121 67-114 (464)
399 3d45_A Poly(A)-specific ribonu 79.0 7.1 0.00024 34.6 8.1 55 138-201 440-494 (507)
400 3d45_A Poly(A)-specific ribonu 50.8 23 0.0008 31.2 5.6 44 49-117 451-495 (507)
401 1xn9_A 30S ribosomal protein S 49.0 28 0.00097 23.5 4.5 78 9-111 2-79 (101)
402 3ulj_A LIN28B, DNA-binding pro 48.8 4.8 0.00016 26.7 0.6 16 211-226 12-27 (90)
403 1ywx_A 30S ribosomal protein S 43.7 51 0.0018 22.3 5.1 78 9-111 2-79 (102)
404 2v94_A RPS24, 30S ribosomal pr 42.9 52 0.0018 22.4 5.1 79 9-111 10-88 (107)
405 2k5n_A Putative cold-shock pro 38.8 10 0.00036 24.0 1.0 16 213-228 8-23 (74)
406 2kcm_A Cold shock domain famil 36.4 12 0.00041 23.7 1.0 16 213-228 6-21 (74)
407 3cam_A Cold-shock domain famil 35.1 13 0.00045 23.0 1.0 16 213-228 7-22 (67)
408 1c9o_A CSPB, cold-shock protei 32.4 15 0.00053 22.5 1.0 15 214-228 8-22 (66)
409 3ts2_A Protein LIN-28 homolog 32.0 16 0.00054 26.6 1.1 27 53-104 3-29 (148)
410 1h95_A CSD, Y-box binding prot 32.0 13 0.00044 23.9 0.6 17 212-228 13-29 (79)
411 1uw4_A UPF3X; nonsense mediate 31.8 1.1E+02 0.0037 20.0 6.4 57 50-121 14-71 (91)
412 2g1d_A 30S ribosomal protein S 31.5 27 0.00092 23.5 2.2 23 9-31 2-24 (98)
413 3a0j_A Cold shock protein; OB- 31.2 15 0.00052 23.1 0.8 15 214-228 8-22 (73)
414 4e8u_A Putative uncharacterize 29.8 1.7E+02 0.0058 21.7 7.6 54 139-195 13-77 (172)
415 3lpe_A Putative transcription 29.4 1.1E+02 0.0037 19.9 4.9 20 95-114 49-68 (92)
416 3aqq_A Calcium-regulated heat 28.7 18 0.00062 26.3 1.0 27 199-228 57-83 (147)
417 3i2z_B RNA chaperone, negative 28.3 20 0.00068 22.4 1.0 15 214-228 12-26 (71)
418 1g6p_A Cold shock protein TMCS 27.5 21 0.00071 21.9 1.0 14 215-228 8-21 (66)
419 2lss_A Cold shock-like protein 31.2 15 0.00051 22.9 0.0 17 212-228 9-25 (70)
420 2g0c_A ATP-dependent RNA helic 21.9 66 0.0023 19.8 2.6 58 149-215 12-74 (76)
No 1
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.7e-32 Score=207.31 Aligned_cols=161 Identities=18% Similarity=0.371 Sum_probs=141.5
Q ss_pred eeEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEEEe
Q psy14193 24 LKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRF 103 (239)
Q Consensus 24 ~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV~f 103 (239)
|.|||+++......+ +|+++|++||+|.+|++ . .+. +++++|||||+|
T Consensus 1 R~l~V~nlp~~~t~~--------------~l~~~f~~~G~i~~v~i---~--------------~~~-~~~~~g~afV~f 48 (166)
T 3md3_A 1 RVLYVGNLDKAITED--------------ILKQYFQVGGPIANIKI---M--------------IDK-NNKNVNYAFVEY 48 (166)
T ss_dssp CEEEEEEEETTCCHH--------------HHHHHHGGGSCEEEEEE---E--------------CCC-C-CCEEEEEEEE
T ss_pred CEEEECCCCCcCCHH--------------HHHHHHHhcCCeEEEEE---E--------------ECC-CCCCCCEEEEEe
Confidence 467887766554443 99999999999999984 2 222 245779999999
Q ss_pred CCHHHHHHHHH-hCCCccCCeeEEEeccCCCCCC---CCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCC
Q psy14193 104 KNLESVEKALE-MNGHVIDEHTIRVDKALTTTKS---NSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIG 179 (239)
Q Consensus 104 ~~~e~a~~Ai~-~~~~~l~g~~i~v~~~~~~~~~---~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~ 179 (239)
.+.++|++|++ +++..+.|+.|.|.++.+.... +.++|||+|||.++++++|+++|++||.|.++.++.++.+|.+
T Consensus 49 ~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~ 128 (166)
T 3md3_A 49 HQSHDANIALQTLNGKQIENNIVKINWAFQSQQSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSS 128 (166)
T ss_dssp SSHHHHHHHHHHHTTCEETTEECEEEECCCCCCCCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCE
T ss_pred CCHHHHHHHHHHcCCCccCCCeeEEEEcCCCCCCCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCc
Confidence 99999999998 9999999999999998766543 3789999999999999999999999999999999999889999
Q ss_pred ceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeCCCC
Q psy14193 180 KGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTN 216 (239)
Q Consensus 180 kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~~~~ 216 (239)
+|||||+|.+.++|.+|+..+||..++|+.|++.++.
T Consensus 129 ~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 165 (166)
T 3md3_A 129 RGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAA 165 (166)
T ss_dssp EEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESC
T ss_pred ceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEecC
Confidence 9999999999999999999999999999999997653
No 2
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=100.00 E-value=3.2e-32 Score=210.13 Aligned_cols=161 Identities=18% Similarity=0.331 Sum_probs=144.4
Q ss_pred ceeEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEEE
Q psy14193 23 KLKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVR 102 (239)
Q Consensus 23 ~~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV~ 102 (239)
.+.|||+++......+ +|+++|++||+|.+|+ +++++.++.++|||||+
T Consensus 3 ~~~l~v~nlp~~~~~~--------------~l~~~f~~~G~i~~v~-----------------i~~~~~~~~~~g~afV~ 51 (168)
T 1b7f_A 3 NTNLIVNYLPQDMTDR--------------ELYALFRAIGPINTCR-----------------IMRDYKTGYSYGYAFVD 51 (168)
T ss_dssp CSEEEEECCCTTCCHH--------------HHHHHHHTTSCEEEEE-----------------CCEETTTTEECSEEEEE
T ss_pred ccEEEEeCCCCCCCHH--------------HHHHHHHhcCCeeEEE-----------------EEEeCCCCccceEEEEE
Confidence 4678888776554444 9999999999999988 35566778889999999
Q ss_pred eCCHHHHHHHHH-hCCCccCCeeEEEeccCCCCCC-CCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCc
Q psy14193 103 FKNLESVEKALE-MNGHVIDEHTIRVDKALTTTKS-NSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGK 180 (239)
Q Consensus 103 f~~~e~a~~Ai~-~~~~~l~g~~i~v~~~~~~~~~-~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~k 180 (239)
|.+.++|++|++ +++..+.|++|.|.++.+.... ..++|||+|||.++++++|+++|++||.|..+.+++++.+|.++
T Consensus 52 f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~ 131 (168)
T 1b7f_A 52 FTSEMDSQRAIKVLNGITVRNKRLKVSYARPGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPR 131 (168)
T ss_dssp ESSHHHHHHHHHHHTTCEETTEECEEEECCCCSSTTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEE
T ss_pred ECCHHHHHHHHHhcCCCEeCCcEEEEEecCCCcccCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcc
Confidence 999999999999 9999999999999999876654 47899999999999999999999999999999999998899999
Q ss_pred eEEEEEecChHHHHHHHHHhCCcEeeE--EEEeeCC
Q psy14193 181 GFGYVNFKAEEEELRKAFESCGEIDNV--RLIRDQH 214 (239)
Q Consensus 181 g~~fV~F~~~e~a~~a~~~~~g~~~~~--r~l~~~~ 214 (239)
|||||+|.+.++|.+|+..+||..+.| +.|+|..
T Consensus 132 g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~~ 167 (168)
T 1b7f_A 132 GVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRL 167 (168)
T ss_dssp EEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEE
T ss_pred eEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEEe
Confidence 999999999999999999999999977 8888753
No 3
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.98 E-value=5.3e-32 Score=217.71 Aligned_cols=159 Identities=23% Similarity=0.348 Sum_probs=142.7
Q ss_pred eeEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEEEe
Q psy14193 24 LKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRF 103 (239)
Q Consensus 24 ~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV~f 103 (239)
..|||+++......+ +|+++|++||+|.+|+ +++|..+++++|||||+|
T Consensus 16 ~tlfVgnLp~~~te~--------------~L~~~F~~~G~I~~v~-----------------i~~d~~tg~~~G~afV~F 64 (213)
T 4f02_A 16 ASLYVGDLHPDVTEA--------------MLYEKFSPAGPILSIR-----------------VCRDMITRRSLGYAYVNF 64 (213)
T ss_dssp CEEEEESCCTTCCHH--------------HHHHHHGGGSCEEEEE-----------------EEECTTTCCEEEEEEEEE
T ss_pred cEEEEeCCCCCCCHH--------------HHHHHHHhhCCEEEEE-----------------EecccCCCCcccccccee
Confidence 578998876654444 9999999999999998 466778899999999999
Q ss_pred CCHHHHHHHHH-hCCCccCCeeEEEeccCCCCCC---CCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCC
Q psy14193 104 KNLESVEKALE-MNGHVIDEHTIRVDKALTTTKS---NSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIG 179 (239)
Q Consensus 104 ~~~e~a~~Ai~-~~~~~l~g~~i~v~~~~~~~~~---~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~ 179 (239)
.+.++|++|++ +++..+.|+.+.+.++...... ...+|||+|||+++|+++|+++|++||.|.+++++++. +.+
T Consensus 65 ~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~--~~~ 142 (213)
T 4f02_A 65 QQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGS 142 (213)
T ss_dssp SSHHHHHHHHHHHTTCEETTEECEEEECCCCTHHHHHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEE
T ss_pred CCHHHHHHHHHHhhhhhcCCcccccccccccccccccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC--CCC
Confidence 99999999999 9999999999999988755432 26799999999999999999999999999999999984 457
Q ss_pred ceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeCCC
Q psy14193 180 KGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHT 215 (239)
Q Consensus 180 kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~~~ 215 (239)
+|||||+|.+.++|.+|+..|||..++|+.|+|..+
T Consensus 143 ~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a 178 (213)
T 4f02_A 143 KGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRF 178 (213)
T ss_dssp EEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred ceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 999999999999999999999999999999999765
No 4
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.98 E-value=1.1e-31 Score=206.71 Aligned_cols=160 Identities=21% Similarity=0.378 Sum_probs=141.8
Q ss_pred ceeEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEEE
Q psy14193 23 KLKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVR 102 (239)
Q Consensus 23 ~~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV~ 102 (239)
.+.|||+++...... ++|+++|++||+|.+|++ +.++.++.++|||||+
T Consensus 2 ~~~l~v~nlp~~~~~--------------~~l~~~f~~~G~i~~v~~-----------------~~~~~~~~~~g~afV~ 50 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQ--------------EEFRSLFGSIGEIESCKL-----------------VRDKITGQSLGYGFVN 50 (167)
T ss_dssp CSEEEEESCCTTCCH--------------HHHHHHHHTTSCEEEEEE-----------------EECTTTCCEEEEEEEE
T ss_pred cceEEEcCCCCCCCH--------------HHHHHHHHhcCCeEEEEE-----------------EeCCCCCcceeEEEEE
Confidence 357888876655444 399999999999999884 4566678889999999
Q ss_pred eCCHHHHHHHHH-hCCCccCCeeEEEeccCCCCCC-CCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCc
Q psy14193 103 FKNLESVEKALE-MNGHVIDEHTIRVDKALTTTKS-NSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGK 180 (239)
Q Consensus 103 f~~~e~a~~Ai~-~~~~~l~g~~i~v~~~~~~~~~-~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~k 180 (239)
|.+.++|++|++ +++..+.|++|.|.++.+.... ..++|||+|||.++++++|+++|++||+|..++++.++.+|.++
T Consensus 51 f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~ 130 (167)
T 1fxl_A 51 YIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSR 130 (167)
T ss_dssp ESSHHHHHHHHHHHTTCEETTEECEEEECCCCCGGGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEE
T ss_pred ECCHHHHHHHHHHcCCCccCCceEEEEecCCCcccCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCcc
Confidence 999999999999 9999999999999999866543 37899999999999999999999999999999999998899999
Q ss_pred eEEEEEecChHHHHHHHHHhCCcEeeEEE--EeeC
Q psy14193 181 GFGYVNFKAEEEELRKAFESCGEIDNVRL--IRDQ 213 (239)
Q Consensus 181 g~~fV~F~~~e~a~~a~~~~~g~~~~~r~--l~~~ 213 (239)
|||||+|.+.++|.+|+..+||..+.|+. |++.
T Consensus 131 g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~ 165 (167)
T 1fxl_A 131 GVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVK 165 (167)
T ss_dssp EEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEE
T ss_pred ceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEE
Confidence 99999999999999999999999999875 5543
No 5
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.98 E-value=1.8e-31 Score=211.04 Aligned_cols=162 Identities=22% Similarity=0.375 Sum_probs=142.3
Q ss_pred cceeEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEE
Q psy14193 22 SKLKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYV 101 (239)
Q Consensus 22 ~~~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV 101 (239)
..+.|||+++......+ +|+++|++||+|.+|+ ++.++.++.++|||||
T Consensus 12 ~~~~l~V~nLp~~~te~--------------~l~~~F~~~G~i~~v~-----------------i~~~~~~g~~~g~afV 60 (196)
T 1l3k_A 12 QLRKLFIGGLSFETTDE--------------SLRSHFEQWGTLTDCV-----------------VMRDPNTKRSRGFGFV 60 (196)
T ss_dssp GGGEEEEESCCTTCCHH--------------HHHHHHGGGSCEEEEE-----------------EEECTTTCCEEEEEEE
T ss_pred CCCEEEEeCCCCCCCHH--------------HHHHHHHhCCCEEEEE-----------------EEEcCCCCCccceEEE
Confidence 46788888776654444 9999999999999988 4566778889999999
Q ss_pred EeCCHHHHHHHHHhCCCccCCeeEEEeccCCCCCC-------CCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecC
Q psy14193 102 RFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKS-------NSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQ 174 (239)
Q Consensus 102 ~f~~~e~a~~Ai~~~~~~l~g~~i~v~~~~~~~~~-------~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~ 174 (239)
+|.+.++|++|++.++..+.|+.|.|.++.+.... ..++|||+|||.++|+++|+++|++||.|..+.++.++
T Consensus 61 ~f~~~~~A~~A~~~~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~ 140 (196)
T 1l3k_A 61 TYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDR 140 (196)
T ss_dssp EESSHHHHHHHHHTCSCEETTEECEEEECCC-----------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECT
T ss_pred EeCCHHHHHHHHhcCCCEECCEEeeeecccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecC
Confidence 99999999999999999999999999998765432 25899999999999999999999999999999999998
Q ss_pred CCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeCCC
Q psy14193 175 HTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHT 215 (239)
Q Consensus 175 ~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~~~ 215 (239)
.+|.++|||||+|.+.++|.+|+.. +|..++|+.|.+..+
T Consensus 141 ~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a 180 (196)
T 1l3k_A 141 GSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKA 180 (196)
T ss_dssp TTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEEC
T ss_pred CCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEec
Confidence 8999999999999999999988876 899999999999755
No 6
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.98 E-value=4.4e-31 Score=220.81 Aligned_cols=176 Identities=15% Similarity=0.258 Sum_probs=153.4
Q ss_pred ccccceeEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcce
Q psy14193 19 NLMSKLKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMN 98 (239)
Q Consensus 19 ~~~~~~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~ 98 (239)
..-..+.|||+++......+ +|+++|++|| |.+|.+ ++++||
T Consensus 18 ~~~~~~~l~V~nLp~~~te~--------------~l~~~F~~~G-i~~~~~-----------------------~~~~g~ 59 (284)
T 3smz_A 18 QFRNRRKILIRGLPGDVTNQ--------------EVHDLLSDYE-LKYCFV-----------------------DKYKGT 59 (284)
T ss_dssp HHHCCCEEEEECCCTTCCHH--------------HHHHHTTTSC-EEEEEE-----------------------ETTTTE
T ss_pred cCCCCCEEEEeCCCCCCCHH--------------HHHHHHHHcC-CEEEEE-----------------------ecCCCE
Confidence 34455778888776554443 9999999999 998874 356799
Q ss_pred EEEEeCCHHHHHHHHH-hCCCccCCeeEEEeccCCCCCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCC
Q psy14193 99 AYVRFKNLESVEKALE-MNGHVIDEHTIRVDKALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTN 177 (239)
Q Consensus 99 afV~f~~~e~a~~Ai~-~~~~~l~g~~i~v~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg 177 (239)
|||+|.+.++|++|++ +++..+.|++|.|.++.+. ++|||+|||+++++++|+++|++||.|..+.++.++.+|
T Consensus 60 afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~-----~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g 134 (284)
T 3smz_A 60 AFVTLLNGEQAEAAINAFHQSRLRERELSVQLQPTD-----ALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTG 134 (284)
T ss_dssp EEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCS-----CEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTC
T ss_pred EEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEecCCC-----CEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCC
Confidence 9999999999999999 9999999999999986544 699999999999999999999999999999999998899
Q ss_pred CCceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeCC-------------------------------------------
Q psy14193 178 IGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQH------------------------------------------- 214 (239)
Q Consensus 178 ~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~~------------------------------------------- 214 (239)
.++|||||+|.+.++|.+|+..++|..++|+.|++..
T Consensus 135 ~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~~~~~~~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~ 214 (284)
T 3smz_A 135 QSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTDAGQLTPALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTF 214 (284)
T ss_dssp CEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCGGGCCTTTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSE
T ss_pred ccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCCCCcccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEE
Confidence 9999999999999999999999999988887775521
Q ss_pred -------CCCCcceEEEEeCChHHHHhhhh
Q psy14193 215 -------TNIGKGFGYVNFKVSFTTLSSIF 237 (239)
Q Consensus 215 -------~~~~~G~~fv~f~~~~~a~~a~~ 237 (239)
.+.++|||||+|.++++|.+|+.
T Consensus 215 v~i~~~~~g~~~g~afV~f~~~~~A~~A~~ 244 (284)
T 3smz_A 215 CQLACGQDGQLKGFAVLEYETAEMAEEAQQ 244 (284)
T ss_dssp EEEEECSSCCEEEEEEEECSSHHHHHHHHH
T ss_pred EEEEECCCCCcccEEEEEeCCHHHHHHHHH
Confidence 23458999999999999999985
No 7
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.97 E-value=3.5e-31 Score=212.40 Aligned_cols=162 Identities=17% Similarity=0.332 Sum_probs=141.0
Q ss_pred eeEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEEEe
Q psy14193 24 LKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRF 103 (239)
Q Consensus 24 ~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV~f 103 (239)
+.|||+++...... ++|+++|++||+|.+|++ +++..++.++|||||+|
T Consensus 29 ~~l~V~nLp~~~t~--------------~~l~~~f~~~G~i~~v~i-----------------~~~~~~g~~~g~afV~f 77 (216)
T 2qfj_A 29 SRVYVGSIYYELGE--------------DTIRQAFAPFGPIKSIDM-----------------SWDSVTMKHKGFAFVEY 77 (216)
T ss_dssp TEEEEECCCTTCCH--------------HHHHHHHGGGSCEEEEEE-----------------CCC-CC-CCCSEEEEEE
T ss_pred CEEEEECCCCCCCH--------------HHHHHHHHhCCCEEEEEE-----------------eecCCCCccCceEEEEe
Confidence 46777665544333 499999999999999983 45666788899999999
Q ss_pred CCHHHHHHHHH-hCCCccCCeeEEEeccCCCCC------------CCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEE
Q psy14193 104 KNLESVEKALE-MNGHVIDEHTIRVDKALTTTK------------SNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRL 170 (239)
Q Consensus 104 ~~~e~a~~Ai~-~~~~~l~g~~i~v~~~~~~~~------------~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i 170 (239)
.+.++|++|++ +++..+.|+.|.|.++..... ...++|||+|||.++++++|+++|++||.|..+++
T Consensus 78 ~~~~~A~~A~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i 157 (216)
T 2qfj_A 78 EVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATL 157 (216)
T ss_dssp SSHHHHHHHHHHHSSCCCC-CCCEEECCSCCGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEE
T ss_pred CCHHHHHHHHHHccCCeeCCeeEEEecCCCccccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEE
Confidence 99999999999 999999999999988776543 23689999999999999999999999999999999
Q ss_pred eecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeCCCC
Q psy14193 171 IRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTN 216 (239)
Q Consensus 171 ~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~~~~ 216 (239)
+.++.+|.++|||||+|.+.++|.+|+..+||..++|+.|+|..+.
T Consensus 158 ~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a~ 203 (216)
T 2qfj_A 158 ARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAV 203 (216)
T ss_dssp EECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEECS
T ss_pred EecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEec
Confidence 9998899999999999999999999999999999999999997653
No 8
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.97 E-value=7.8e-31 Score=220.15 Aligned_cols=159 Identities=14% Similarity=0.203 Sum_probs=134.9
Q ss_pred HHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEEEeCCHHHHHHHHHhCCCccCCeeEEEeccC
Q psy14193 52 SSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKAL 131 (239)
Q Consensus 52 ~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV~f~~~e~a~~Ai~~~~~~l~g~~i~v~~~~ 131 (239)
++|+++|++||+|.+|++ +.+..+ ++|||||+|.+.++|++|+++++..+.|++|.|.++.
T Consensus 56 ~~l~~~F~~~G~i~~v~i-----------------~~~~~~--~~g~afV~f~~~~~A~~A~~~~~~~~~g~~i~v~~~~ 116 (292)
T 2ghp_A 56 NKVYKYFKHCGPIIHVDV-----------------ADSLKK--NFRFARIEFARYDGALAAITKTHKVVGQNEIIVSHLT 116 (292)
T ss_dssp HHHHHHHGGGSCEEEEEE-----------------EECTTS--SSEEEEEEESSHHHHHHHHTTTTCEETTEECEEEECC
T ss_pred HHHHHHHHhcCCeEEEEE-----------------EECCCC--CcEEEEEEECCHHHHHHHHHhCCcEeCCcEEEEEECC
Confidence 599999999999999984 222222 4699999999999999999999999999999999874
Q ss_pred CCCCCCCcEEEEcCCCCCCcHHHHHHHhhcCC-CeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEE
Q psy14193 132 TTTKSNSHSIFIGNIPFEAEEEELRKAFESCG-EIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLI 210 (239)
Q Consensus 132 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l 210 (239)
.++|||+|||+++++++|+++|++|| +|..+.++.++ .|.++|||||+|.+.++|.+|+..++|..+.|+.|
T Consensus 117 ------~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 189 (292)
T 2ghp_A 117 ------ECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLR-FNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTL 189 (292)
T ss_dssp ------SCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEETTEEC
T ss_pred ------CCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEE
Confidence 45999999999999999999999999 99999999985 48899999999999999999999999998887776
Q ss_pred eeCC--------------------------------------------------------CCCCcceEEEEeCChHHHHh
Q psy14193 211 RDQH--------------------------------------------------------TNIGKGFGYVNFKVSFTTLS 234 (239)
Q Consensus 211 ~~~~--------------------------------------------------------~~~~~G~~fv~f~~~~~a~~ 234 (239)
.+.. ++.++|||||+|.++++|.+
T Consensus 190 ~v~~a~~~~~~~~~~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~ 269 (292)
T 2ghp_A 190 VTKVSNPLEKSKRTDSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAER 269 (292)
T ss_dssp EEEECCCC---------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHH
T ss_pred EEEECCCCcccccccccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHH
Confidence 6531 15668999999999999999
Q ss_pred hh
Q psy14193 235 SI 236 (239)
Q Consensus 235 a~ 236 (239)
|+
T Consensus 270 A~ 271 (292)
T 2ghp_A 270 AL 271 (292)
T ss_dssp HG
T ss_pred HH
Confidence 98
No 9
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.97 E-value=1.3e-31 Score=206.61 Aligned_cols=160 Identities=21% Similarity=0.353 Sum_probs=140.7
Q ss_pred ceeEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEEE
Q psy14193 23 KLKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVR 102 (239)
Q Consensus 23 ~~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV~ 102 (239)
.+.|||+.+......+ +|+++|++||+|.+|+ +++++.++.++|||||+
T Consensus 3 ~~~l~v~nLp~~~t~~--------------~l~~~F~~~G~i~~v~-----------------i~~~~~~g~~~g~afV~ 51 (167)
T 2cjk_A 3 SCKMFIGGLNWDTTED--------------NLREYFGKYGTVTDLK-----------------IMKDPATGRSRGFGFLS 51 (167)
T ss_dssp GGEEEECSCCTTCCHH--------------HHHHHHTTTCCEEEEE-----------------CCCCTTTSSCCSCEEEE
T ss_pred CcEEEEeCCCCCCCHH--------------HHHHHHHhCCCEEEEE-----------------EEECCCCCCccceEEEE
Confidence 4678888776554444 9999999999999998 45567788899999999
Q ss_pred eCCHHHHHHHHHhCCCccCCeeEEEeccCCCCCC-CCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCce
Q psy14193 103 FKNLESVEKALEMNGHVIDEHTIRVDKALTTTKS-NSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKG 181 (239)
Q Consensus 103 f~~~e~a~~Ai~~~~~~l~g~~i~v~~~~~~~~~-~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg 181 (239)
|.+.++|++|++ ++..+.|+.|.+.++.+.... +.++|||+|||.++++++|+++|++||+|.++.++.++.+|.++|
T Consensus 52 f~~~~~a~~A~~-~~~~~~g~~i~v~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g 130 (167)
T 2cjk_A 52 FEKPSSVDEVVK-TQHILDGKVIDPKRAIPRDEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRG 130 (167)
T ss_dssp ESSTHHHHHHHH-SCCEETTEECCCEECCCHHHHHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSE
T ss_pred EccHHHHHHHHh-cccccCCeEcccccccchhhccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccce
Confidence 999999999998 357899999999988765433 267999999999999999999999999999999999988999999
Q ss_pred EEEEEecChHHHHHHHHHhCCcEeeEEEEeeCCC
Q psy14193 182 FGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHT 215 (239)
Q Consensus 182 ~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~~~ 215 (239)
||||+|.+.++|.+|+. ++|..++|+.|+|..+
T Consensus 131 ~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a 163 (167)
T 2cjk_A 131 FGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRA 163 (167)
T ss_dssp EEEEEESSHHHHHHHHH-CSEECSSSSCEEEEEC
T ss_pred EEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeec
Confidence 99999999998888876 8999999999999866
No 10
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.97 E-value=2e-30 Score=201.12 Aligned_cols=161 Identities=17% Similarity=0.330 Sum_probs=138.4
Q ss_pred ceeEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCC--CCcceEE
Q psy14193 23 KLKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEK--RTNMNAY 100 (239)
Q Consensus 23 ~~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~--~~~G~af 100 (239)
.++|||+++......+ +|+++|++||+|.+|++ +++..++ +++||||
T Consensus 3 ~~~l~V~nLp~~~te~--------------~l~~~F~~~G~i~~v~i-----------------~~~~~~~~~~~~g~af 51 (175)
T 3nmr_A 3 AIKMFVGQVPRTWSEK--------------DLRELFEQYGAVYEINV-----------------LRDRSQNPPQSKGCCF 51 (175)
T ss_dssp CEEEEEESCCTTCCHH--------------HHHHHHHTTSCEEEEEE-----------------EEECSSSSCEEEEEEE
T ss_pred ceEEEEeCCCCCCCHH--------------HHHHHHHhCCCEEEEEE-----------------EecCCCCCCCcceEEE
Confidence 4688998876654444 99999999999999984 4455555 7889999
Q ss_pred EEeCCHHHHHHHHH-hCCCccC---CeeEEEeccCCCCCC--CCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecC
Q psy14193 101 VRFKNLESVEKALE-MNGHVID---EHTIRVDKALTTTKS--NSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQ 174 (239)
Q Consensus 101 V~f~~~e~a~~Ai~-~~~~~l~---g~~i~v~~~~~~~~~--~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~ 174 (239)
|+|.+.++|++|++ +++..+. ++.+.+.++.+.... ..++|||+|||.++|+++|+++|++||.|.++.+++++
T Consensus 52 V~f~~~~~A~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~ 131 (175)
T 3nmr_A 52 VTFYTRKAALEAQNALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP 131 (175)
T ss_dssp EEESSHHHHHHHHHHHTTTCCCTTCSSCCEEEECGGGCCSCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT
T ss_pred EEECCHHHHHHHHHHhcCcEEccCCccceEEccccccccccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC
Confidence 99999999999999 9998875 788888887766554 37899999999999999999999999999999999995
Q ss_pred CCCCCceEEEEEecChHHHHHHHHHhCCcEee---EEEEeeCCC
Q psy14193 175 HTNIGKGFGYVNFKAEEEELRKAFESCGEIDN---VRLIRDQHT 215 (239)
Q Consensus 175 ~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~---~r~l~~~~~ 215 (239)
+|.++|||||+|.+.++|.+|+..+||..+. ++.|+|.++
T Consensus 132 -~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~a 174 (175)
T 3nmr_A 132 -DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFA 174 (175)
T ss_dssp -TSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEEEC
T ss_pred -CCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEEec
Confidence 6999999999999999999999999998765 378887643
No 11
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.97 E-value=3.6e-30 Score=199.43 Aligned_cols=157 Identities=15% Similarity=0.358 Sum_probs=139.2
Q ss_pred cceeEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccC----C-------ceeEEEEeecccccCCCccceeeecccc
Q psy14193 22 SKLKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPY----G-------EVETVRFRSVPVADITLPRKACIKMNKV 90 (239)
Q Consensus 22 ~~~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~----G-------~I~~v~l~~~~~~~~~~~~~~~~~~~~~ 90 (239)
..+.|||+++......+ +|+++|++| | .|.++++
T Consensus 3 ~~~~l~V~nLp~~~t~~--------------~l~~~F~~~g~~~g~~~~~~~~v~~~~~--------------------- 47 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEE--------------AMMDFFNAQMRLGGLTQAPGNPVLAVQI--------------------- 47 (172)
T ss_dssp GGGEEEEESCCTTCCHH--------------HHHHHHHHHHHHTTCCSSSSCSEEEEEE---------------------
T ss_pred cccEEEEcCCCcccCHH--------------HHHHHHHHHhhhcccccCCCCceeeeEe---------------------
Confidence 35788998876664444 999999999 5 6666552
Q ss_pred cCCCCcceEEEEeCCHHHHHHHHHhCCCccCCeeEEEeccCCCCCC-CCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEE
Q psy14193 91 HEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKS-NSHSIFIGNIPFEAEEEELRKAFESCGEIDNVR 169 (239)
Q Consensus 91 ~t~~~~G~afV~f~~~e~a~~Ai~~~~~~l~g~~i~v~~~~~~~~~-~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~ 169 (239)
++++|||||+|.++++|++|+.+++..+.|++|.|.++.+.... ..++|||+|||.++++++|+++|++||+|..+.
T Consensus 48 --~~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~i~v~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~ 125 (172)
T 2g4b_A 48 --NQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHDYQPLPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFN 125 (172)
T ss_dssp --ETTTTEEEEEESSHHHHHHHGGGTTCEETTEECEEECCSSCCCCTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEE
T ss_pred --cCCCCEEEEEeCCHHHHHHHHHhCCcEecCceeeecCCcccCCCCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEE
Confidence 45579999999999999999999999999999999998766543 378999999999999999999999999999999
Q ss_pred EeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeCCC
Q psy14193 170 LIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHT 215 (239)
Q Consensus 170 i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~~~ 215 (239)
++.++.+|.++|||||+|.+.++|.+|+..+||..++|+.|+|.++
T Consensus 126 i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 126 LVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp EEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred EEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 9999889999999999999999999999999999999999999754
No 12
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.97 E-value=1.9e-30 Score=216.91 Aligned_cols=187 Identities=12% Similarity=0.151 Sum_probs=157.3
Q ss_pred hcccccccccccccceeEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccCCceeEEEEeecccccCCCccceeeecc
Q psy14193 9 SLTMIPTQNRNLMSKLKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMN 88 (239)
Q Consensus 9 ~~~~~~~~n~~~~~~~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~ 88 (239)
+..++..+||..+.|+.+.|.+.......- ..........++|+++|++||+|.+|++ +.
T Consensus 70 A~~A~~~l~~~~~~g~~i~v~~~~~~~~l~---v~nlp~~~t~~~l~~~f~~~G~i~~~~i-----------------~~ 129 (284)
T 3smz_A 70 AEAAINAFHQSRLRERELSVQLQPTDALLC---VANLPPSLTQQQFEELVRPFGSLERCFL-----------------VY 129 (284)
T ss_dssp HHHHHHHHTTCEETTEECEEEECCCSCEEE---EESCCTTCCHHHHHHHHGGGSCEEEEEE-----------------EE
T ss_pred HHHHHHHcCCCeeCCeEEEEEecCCCCEEE---EcCCCCcCCHHHHHHHHHhcCCeeEEEE-----------------Ee
Confidence 345677899999999999987643221100 0011122344899999999999999883 45
Q ss_pred cccCCCCcceEEEEeCCHHHHHHHHH-hCCCccCCeeEEEeccCCCCCC----CCcEEEEcCCCCCC-cHHHHHHHhhcC
Q psy14193 89 KVHEKRTNMNAYVRFKNLESVEKALE-MNGHVIDEHTIRVDKALTTTKS----NSHSIFIGNIPFEA-EEEELRKAFESC 162 (239)
Q Consensus 89 ~~~t~~~~G~afV~f~~~e~a~~Ai~-~~~~~l~g~~i~v~~~~~~~~~----~~~~l~V~nLp~~~-t~~~l~~~F~~~ 162 (239)
+..++.++|||||+|.+.++|.+|++ +++..+.|++|.|.++.+.... ..++|||+|||.++ ++++|+++|++|
T Consensus 130 ~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~~~~~~~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~ 209 (284)
T 3smz_A 130 SERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTDAGQLTPALLHSRCLCVDRLPPGFNDVDALCRALSAV 209 (284)
T ss_dssp CTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCGGGCCTTTTSCSEEEEECCCTTCCCHHHHHHHTCSS
T ss_pred eCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCCCCcccCCccEEEEecCCcccCCHHHHHHHhhCC
Confidence 66778889999999999999999998 9999999999999999876543 37899999999995 999999999999
Q ss_pred CCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeCCCC
Q psy14193 163 GEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTN 216 (239)
Q Consensus 163 G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~~~~ 216 (239)
|.|.++.++.++ +|.++|+|||+|.+.++|.+|+..+||..++|+.|++..+.
T Consensus 210 G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 262 (284)
T 3smz_A 210 HSPTFCQLACGQ-DGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSFCA 262 (284)
T ss_dssp SCCSEEEEEECS-SCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCeEEEEEEECC-CCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEEec
Confidence 999999999985 89999999999999999999999999999999999998764
No 13
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.96 E-value=6.5e-29 Score=196.58 Aligned_cols=168 Identities=13% Similarity=0.304 Sum_probs=138.6
Q ss_pred ceeEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEEE
Q psy14193 23 KLKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVR 102 (239)
Q Consensus 23 ~~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV~ 102 (239)
.++|||+++......+ +|+++|++||+|..+.. .+ . ..+.+..+++++|||||+
T Consensus 4 ~~~l~V~nLp~~~te~--------------~l~~~F~~~g~i~g~~~--~~---~-------~~v~~~~~~~~~g~afV~ 57 (198)
T 2yh0_A 4 ARRLYVGNIPFGITEE--------------AMMDFFNAQMRLGGLTQ--AP---G-------NPVLAVQINQDKNFAFLE 57 (198)
T ss_dssp CCEEEEESCCTTCCHH--------------HHHHHHHHHHHHHTCCS--SS---S-------CSEEEEEEETTTTEEEEE
T ss_pred eeEEEEcCCCCCCCHH--------------HHHHHHHHHHhhccccc--CC---C-------CceEEeEecCCCCEEEEE
Confidence 4788998876665444 99999999954332110 00 0 011122235668999999
Q ss_pred eCCHHHHHHHHHhCCCccCCeeEEEeccCCCCC---------------------CCCcEEEEcCCCCCCcHHHHHHHhhc
Q psy14193 103 FKNLESVEKALEMNGHVIDEHTIRVDKALTTTK---------------------SNSHSIFIGNIPFEAEEEELRKAFES 161 (239)
Q Consensus 103 f~~~e~a~~Ai~~~~~~l~g~~i~v~~~~~~~~---------------------~~~~~l~V~nLp~~~t~~~l~~~F~~ 161 (239)
|.+.++|++|+.+|+..+.|++|.|.++.+... ...++|||+|||.++++++|+++|++
T Consensus 58 F~~~~~A~~Al~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~ 137 (198)
T 2yh0_A 58 FRSVDETTQAMAFDGIIFQGQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTS 137 (198)
T ss_dssp ESCSHHHHHHGGGTTEEETTEEEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHT
T ss_pred eCCHHHHHHHHHhcCCEEcCceEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHH
Confidence 999999999999999999999999998865421 23689999999999999999999999
Q ss_pred CCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeCCCC
Q psy14193 162 CGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTN 216 (239)
Q Consensus 162 ~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~~~~ 216 (239)
||.|..+.++.++.+|.++|||||+|.+.++|.+|+..+||..++|+.|++..+.
T Consensus 138 ~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 192 (198)
T 2yh0_A 138 FGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRAS 192 (198)
T ss_dssp BSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESC
T ss_pred cCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 9999999999998899999999999999999999999999999999999998764
No 14
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.96 E-value=2e-29 Score=196.03 Aligned_cols=157 Identities=22% Similarity=0.326 Sum_probs=138.0
Q ss_pred cceeEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEE
Q psy14193 22 SKLKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYV 101 (239)
Q Consensus 22 ~~~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV 101 (239)
..+.|||+++......+ +|+++|++||.+..+ ++.+..++.++|||||
T Consensus 12 ~~~~l~V~nLp~~~t~~--------------~l~~~f~~~g~~~~~------------------~~~~~~~~~~~g~afV 59 (175)
T 1fje_B 12 TPFNLFIGNLNPNKSVA--------------ELKVAISELFAKNDL------------------AVVDVRTGTNRKFGYV 59 (175)
T ss_dssp SSEEEEEECCCTTSCHH--------------HHHHHHHHHHHHHTC------------------CCCEEEEETTTTEEEE
T ss_pred CCcEEEEeCCCCCCCHH--------------HHHHHHHHhCCcceE------------------EEEECCCCccccEEEE
Confidence 56889999876665444 999999999988652 2445567888999999
Q ss_pred EeCCHHHHHHHHHhCCCccCCeeEEEeccCCCCCC---CCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCC
Q psy14193 102 RFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKS---NSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNI 178 (239)
Q Consensus 102 ~f~~~e~a~~Ai~~~~~~l~g~~i~v~~~~~~~~~---~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~ 178 (239)
+|.+.++|++|+++|+..+.|++|.|.++.+.... ..++|||+|||.++++++|+++|++||.|..+ ..+|.
T Consensus 60 ~f~~~~~a~~A~~l~g~~~~g~~l~v~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~ 134 (175)
T 1fje_B 60 DFESAEDLEKALELTGLKVFGNEIKLEKPKGRDSKKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGK 134 (175)
T ss_dssp EESSHHHHHHHHHGGGEEETTEEEEEECCCCSSCSTTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSS
T ss_pred EECCHHHHHHHHhcCCCEeCCeEEEEecCCCccccccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCC
Confidence 99999999999999999999999999999866543 37899999999999999999999999988766 36789
Q ss_pred CceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeCCC
Q psy14193 179 GKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHT 215 (239)
Q Consensus 179 ~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~~~ 215 (239)
++|||||+|.+.++|.+|+..+||..++|+.|++..+
T Consensus 135 ~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 171 (175)
T 1fje_B 135 SKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYT 171 (175)
T ss_dssp CCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEEC
T ss_pred CceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEec
Confidence 9999999999999999999999999999999999866
No 15
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.96 E-value=6.4e-29 Score=208.47 Aligned_cols=183 Identities=17% Similarity=0.262 Sum_probs=145.4
Q ss_pred cccccccccccccceeEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccCC-ceeEEEEeecccccCCCccceeeecc
Q psy14193 10 LTMIPTQNRNLMSKLKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYG-EVETVRFRSVPVADITLPRKACIKMN 88 (239)
Q Consensus 10 ~~~~~~~n~~~~~~~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G-~I~~v~l~~~~~~~~~~~~~~~~~~~ 88 (239)
..++ ++||..++|+.+.|.+.....-.. .........++|+++|++|| +|.+|++ +.+
T Consensus 95 ~~A~-~~~~~~~~g~~i~v~~~~~~~l~v----~nlp~~~t~~~l~~~f~~~G~~i~~v~i---~~~------------- 153 (292)
T 2ghp_A 95 LAAI-TKTHKVVGQNEIIVSHLTECTLWM----TNFPPSYTQRNIRDLLQDINVVALSIRL---PSL------------- 153 (292)
T ss_dssp HHHH-TTTTCEETTEECEEEECCSCEEEE----ECCCTTCCHHHHHHHHHHTTCCCCEEEC---C---------------
T ss_pred HHHH-HhCCcEeCCcEEEEEECCCCEEEE----ECCCCCCCHHHHHHHHHHhCCCeEEEEE---EeC-------------
Confidence 3455 589999999999887642111000 01112234489999999999 9999983 322
Q ss_pred cccCCCCcceEEEEeCCHHHHHHHHH-hCCCccCCeeEEEeccCCCCCC--------CCcEEEEcCCCCC-CcHHHHHHH
Q psy14193 89 KVHEKRTNMNAYVRFKNLESVEKALE-MNGHVIDEHTIRVDKALTTTKS--------NSHSIFIGNIPFE-AEEEELRKA 158 (239)
Q Consensus 89 ~~~t~~~~G~afV~f~~~e~a~~Ai~-~~~~~l~g~~i~v~~~~~~~~~--------~~~~l~V~nLp~~-~t~~~l~~~ 158 (239)
.. +.++|||||+|.+.++|.+|++ +++..+.|++|.|.++.+.... ..++|||+|||.+ +++++|+++
T Consensus 154 -~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~l~v~nlp~~~~t~~~l~~~ 231 (292)
T 2ghp_A 154 -RF-NTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSNPLEKSKRTDSATLEGREIMIRNLSTELLDENLLRES 231 (292)
T ss_dssp -------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCC---------CCTTTEEEEEEECTTTCCHHHHHHH
T ss_pred -CC-CCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCcccccccccCCCCceEEEECCCcccCCHHHHHHH
Confidence 22 4567999999999999999999 9999999999999998765432 3689999999999 999999999
Q ss_pred hhcCCCeeEEEEeecCC-CCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeCCCC
Q psy14193 159 FESCGEIDNVRLIRDQH-TNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTN 216 (239)
Q Consensus 159 F~~~G~i~~v~i~~~~~-tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~~~~ 216 (239)
|++||.|..++++.+.. ||.++|||||+|.+.++|.+|+ .+||..++|+.|+|.++.
T Consensus 232 F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~V~~a~ 289 (292)
T 2ghp_A 232 FEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREISVSLAD 289 (292)
T ss_dssp HGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEEEEECC
T ss_pred HhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEEEEEec
Confidence 99999999999999865 5999999999999999999999 999999999999998763
No 16
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.96 E-value=2e-28 Score=195.66 Aligned_cols=149 Identities=16% Similarity=0.177 Sum_probs=126.5
Q ss_pred ceeEEeehhh-HhhhhhcCCCcchhhchhHHHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEE
Q psy14193 23 KLKVFLNIWK-MALKLKMNPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYV 101 (239)
Q Consensus 23 ~~~v~v~~~~-~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV 101 (239)
+..|||+++. .....+ +|+++|++||.|.+|++ +. .++|||||
T Consensus 4 ~~~l~V~nL~~~~~~~~--------------~L~~~F~~~G~v~~v~i---~~-------------------~~~g~afV 47 (205)
T 3tyt_A 4 SPVLMVYGLDQSKMNCD--------------RVFNVFCLYGNVEKVKF---MK-------------------SKPGAAMV 47 (205)
T ss_dssp CSEEEEECCCTTTCCHH--------------HHHHHHTTTSCEEEEEE---CT-------------------TSTTCEEE
T ss_pred CCEEEEeCCCcccCCHH--------------HHHHHHHhcCCeEEEEE---ec-------------------CCCCEEEE
Confidence 5678898876 443333 99999999999999984 11 13699999
Q ss_pred EeCCHHHHHHHHH-hCCCccCCeeEEEeccCCCCC--------------------------------------CCCcEEE
Q psy14193 102 RFKNLESVEKALE-MNGHVIDEHTIRVDKALTTTK--------------------------------------SNSHSIF 142 (239)
Q Consensus 102 ~f~~~e~a~~Ai~-~~~~~l~g~~i~v~~~~~~~~--------------------------------------~~~~~l~ 142 (239)
+|.+.++|++|++ |||..+.|++|.|.++..... .+.++||
T Consensus 48 ~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~ 127 (205)
T 3tyt_A 48 EMADGYAVDRAITHLNNNFMFGQKMNVCVSKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLH 127 (205)
T ss_dssp EESSHHHHHHHHHHHTTCEETTEECEEEECSCSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEE
T ss_pred EECCHHHHHHHHHHhCCCEECCceEEEEEccCCccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEE
Confidence 9999999999999 999999999999998752210 1245799
Q ss_pred EcCCCCCCcHHHHHHHhhcCCCe--eEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEE
Q psy14193 143 IGNIPFEAEEEELRKAFESCGEI--DNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRL 209 (239)
Q Consensus 143 V~nLp~~~t~~~l~~~F~~~G~i--~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~ 209 (239)
|+|||+++|+++|+++|++||.| .++++..+. +.++|+|||+|.+.++|.+|+..|||..+.++.
T Consensus 128 v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~ 194 (205)
T 3tyt_A 128 FFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPN 194 (205)
T ss_dssp EEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSS
T ss_pred EeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCC
Confidence 99999999999999999999999 899998774 556799999999999999999999999998863
No 17
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.95 E-value=3.5e-27 Score=196.91 Aligned_cols=156 Identities=20% Similarity=0.324 Sum_probs=134.1
Q ss_pred cceeEEeehhhHhhhhhcCCCcchhhchhHHHH----HHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcc
Q psy14193 22 SKLKVFLNIWKMALKLKMNPSLTKSKNHALSSV----TSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNM 97 (239)
Q Consensus 22 ~~~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l----~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G 97 (239)
..+.|||+++......+ +| .++|++||.|.+|++ ++ +++++|
T Consensus 8 ~~~~l~V~nlp~~~~~~--------------~l~~~L~~~F~~~G~i~~v~~-----------------~~---~~~~~g 53 (282)
T 3pgw_A 8 PNHTIYINNLNEKIKKD--------------ELKKSLYAIFSQFGQILDILV-----------------SR---SLKMRG 53 (282)
T ss_pred CCCEEEEeCCCCCCCHH--------------HHHHHHHHHHhccCCeEEEEE-----------------cC---CCCcce
Confidence 36789998876654433 64 499999999999984 11 567789
Q ss_pred eEEEEeCCHHHHHHHHH-hCCCccCCeeEEEeccCCCCC-----------------------------------------
Q psy14193 98 NAYVRFKNLESVEKALE-MNGHVIDEHTIRVDKALTTTK----------------------------------------- 135 (239)
Q Consensus 98 ~afV~f~~~e~a~~Ai~-~~~~~l~g~~i~v~~~~~~~~----------------------------------------- 135 (239)
||||+|.+.++|++|++ +|+..+.|+.|.|.++.....
T Consensus 54 ~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (282)
T 3pgw_A 54 QAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPV 133 (282)
T ss_pred EEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCccc
Confidence 99999999999999998 999999999999998765442
Q ss_pred -----------------------------------------------------------------------CCCcEEEEc
Q psy14193 136 -----------------------------------------------------------------------SNSHSIFIG 144 (239)
Q Consensus 136 -----------------------------------------------------------------------~~~~~l~V~ 144 (239)
.+.++|||+
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~ 213 (282)
T 3pgw_A 134 VGAVQGPVPGMPPMTQAPRIMHHMPGQPPYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLT 213 (282)
T ss_pred CCCCCCCCCCCCcccccccccccCCCCCCCCCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEe
Confidence 024789999
Q ss_pred CCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEee-EEEEeeCCCC
Q psy14193 145 NIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDN-VRLIRDQHTN 216 (239)
Q Consensus 145 nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~-~r~l~~~~~~ 216 (239)
|||.++++++|+++|++||.|.+++++.+. +|||||+|.+.++|.+|+..+||..+. |+.|++.++.
T Consensus 214 nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 214 NLPEETNELMLSMLFNQFPGFKEVRLVPGR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred CCCCcCCHHHHHHHHHhcCCeEEEEEecCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 999999999999999999999999998653 689999999999999999999999999 9999997653
No 18
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.95 E-value=2.4e-27 Score=196.19 Aligned_cols=153 Identities=18% Similarity=0.299 Sum_probs=133.8
Q ss_pred cccceeEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceE
Q psy14193 20 LMSKLKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNA 99 (239)
Q Consensus 20 ~~~~~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~a 99 (239)
.-....|||+++......+ +|+++|++||+|.+|.+ .+++|||
T Consensus 19 ~~~~~~l~V~nLp~~~te~--------------~l~~~F~~~G~i~~v~i-----------------------~~~kg~a 61 (261)
T 3sde_A 19 YTQRCRLFVGNLPTDITEE--------------DFKRLFERYGEPSEVFI-----------------------NRDRGFG 61 (261)
T ss_dssp SCGGGEEEEESCCTTCCHH--------------HHHHHTGGGCCCSEEEE-----------------------ETTTTEE
T ss_pred CCCCCEEEEECCCCCCCHH--------------HHHHHHHhcCCEEEEEE-----------------------eCCCcEE
Confidence 3456789998876554444 99999999999999985 2346999
Q ss_pred EEEeCCHHHHHHHHH-hCCCccCCeeEEEeccCCCCCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCC
Q psy14193 100 YVRFKNLESVEKALE-MNGHVIDEHTIRVDKALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNI 178 (239)
Q Consensus 100 fV~f~~~e~a~~Ai~-~~~~~l~g~~i~v~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~ 178 (239)
||+|.+.++|.+|+. +++..+.|+.|.|.++.+. .+|||+|||..+|+++|+++|+.||.|..+.++.+ .+|.
T Consensus 62 fV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~-----~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~ 135 (261)
T 3sde_A 62 FIRLESRTLAEIAKAELDGTILKSRPLRIRFATHG-----AALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVD-DRGR 135 (261)
T ss_dssp EEECSSHHHHHHHHHHHTTCEETTEECEEEECCCS-----SEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE-TTSC
T ss_pred EEEECCHHHHHHHHHHcCCcEECCceeEeeecccC-----CcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeC-CCCC
Confidence 999999999999999 9999999999999999764 59999999999999999999999999999999999 5899
Q ss_pred CceEEEEEecChHHHHHHHHHh-CCcEee---EEEEeeCCC
Q psy14193 179 GKGFGYVNFKAEEEELRKAFES-CGEIDN---VRLIRDQHT 215 (239)
Q Consensus 179 ~kg~~fV~F~~~e~a~~a~~~~-~g~~~~---~r~l~~~~~ 215 (239)
++|||||+|.+.++|.+|+..+ +|..+. ++.+.|..+
T Consensus 136 ~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~~~ 176 (261)
T 3sde_A 136 ATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPM 176 (261)
T ss_dssp EEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEEEC
T ss_pred cCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEeec
Confidence 9999999999999999999999 555554 777777543
No 19
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.95 E-value=2.1e-27 Score=188.28 Aligned_cols=154 Identities=19% Similarity=0.320 Sum_probs=132.0
Q ss_pred ccceeEEeehhhH-hhhhhcCCCcchhhchhHHHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceE
Q psy14193 21 MSKLKVFLNIWKM-ALKLKMNPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNA 99 (239)
Q Consensus 21 ~~~~~v~v~~~~~-~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~a 99 (239)
|.++.|||+.+.. .... ++|+++|++||+|.+|++ .. +. +|||
T Consensus 1 m~~~~l~v~nlp~~~~~~--------------~~l~~~F~~~G~i~~v~i---~~--------------~~-----~g~a 44 (198)
T 1qm9_A 1 MGNSVLLVSNLNPERVTP--------------QSLFILFGVYGDVQRVKI---LF--------------NK-----KENA 44 (198)
T ss_dssp CCCCEEEEECCCSSSCCH--------------HHHHHHHHTTCCCSEEEC---ST--------------TC-----SSCC
T ss_pred CCCcEEEEeCCCcccCCH--------------HHHHHHHHhcCCEEEEEE---Ee--------------CC-----CCEE
Confidence 3567899988765 4443 399999999999999984 22 11 6899
Q ss_pred EEEeCCHHHHHHHHH-hCCCccCCeeEEEeccCCCC------------------------------------CCCCcEEE
Q psy14193 100 YVRFKNLESVEKALE-MNGHVIDEHTIRVDKALTTT------------------------------------KSNSHSIF 142 (239)
Q Consensus 100 fV~f~~~e~a~~Ai~-~~~~~l~g~~i~v~~~~~~~------------------------------------~~~~~~l~ 142 (239)
||+|.+.++|++|++ +++..+.|++|.|.++.+.. ..+.++||
T Consensus 45 fV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~ 124 (198)
T 1qm9_A 45 LVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLH 124 (198)
T ss_dssp EEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCCCSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEE
T ss_pred EEEECCHHHHHHHHHHhCCCeecCeEEEEEEecCCCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEE
Confidence 999999999999999 99999999999999886431 01267899
Q ss_pred EcCCCCCCcHHHHHHHhhcCC-CeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEee-EEEEeeCCC
Q psy14193 143 IGNIPFEAEEEELRKAFESCG-EIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDN-VRLIRDQHT 215 (239)
Q Consensus 143 V~nLp~~~t~~~l~~~F~~~G-~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~-~r~l~~~~~ 215 (239)
|+|||.++++++|+++|++|| .|..+.+..+ ++|+|||+|.+.++|.+|+..+||..++ ++.|++.++
T Consensus 125 v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a 194 (198)
T 1qm9_A 125 LSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFS 194 (198)
T ss_dssp ECCCCTTCCHHHHHHHHHHTTSCCCEEEESST-----TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEE
T ss_pred EeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC-----CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEee
Confidence 999999999999999999999 9999999764 3789999999999999999999999999 999988754
No 20
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.94 E-value=9.6e-27 Score=188.95 Aligned_cols=154 Identities=18% Similarity=0.316 Sum_probs=132.1
Q ss_pred cceeEEeehhhH-hhhhhcCCCcchhhchhHHHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEE
Q psy14193 22 SKLKVFLNIWKM-ALKLKMNPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAY 100 (239)
Q Consensus 22 ~~~~v~v~~~~~-~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~af 100 (239)
..+.|||+++.. ....+ +|+++|++||+|.+|++ .. +. +||||
T Consensus 33 ~~~~l~V~nLp~~~~te~--------------~L~~~F~~~G~i~~v~i---~~--------------~~-----~g~af 76 (229)
T 2adc_A 33 GNSVLLVSNLNPERVTPQ--------------SLFILFGVYGDVQRVKI---LF--------------NK-----KENAL 76 (229)
T ss_dssp CCSEEEEESCCTTTCCHH--------------HHHHHHHHHTCEEEEEE---CC--------------TT-----SCCEE
T ss_pred CCCEEEEeCCCcccCCHH--------------HHHHHHHhCCCeEEEEE---EE--------------CC-----CCEEE
Confidence 457899988766 44443 99999999999999985 21 11 68999
Q ss_pred EEeCCHHHHHHHHH-hCCCccCCeeEEEeccCCCC------------------------------------CCCCcEEEE
Q psy14193 101 VRFKNLESVEKALE-MNGHVIDEHTIRVDKALTTT------------------------------------KSNSHSIFI 143 (239)
Q Consensus 101 V~f~~~e~a~~Ai~-~~~~~l~g~~i~v~~~~~~~------------------------------------~~~~~~l~V 143 (239)
|+|.+.++|++|++ +++..+.|+.|.|.++.+.. ..+.++|||
T Consensus 77 V~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V 156 (229)
T 2adc_A 77 VQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHL 156 (229)
T ss_dssp EEESCHHHHHHHHHHHTTCBCSSSBCEEECCSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEE
T ss_pred EEECCHHHHHHHHHHhCCCeECCeEEEEEEecCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEE
Confidence 99999999999999 99999999999999886441 012588999
Q ss_pred cCCCCCCcHHHHHHHhhcCC-CeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEee-EEEEeeCCCC
Q psy14193 144 GNIPFEAEEEELRKAFESCG-EIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDN-VRLIRDQHTN 216 (239)
Q Consensus 144 ~nLp~~~t~~~l~~~F~~~G-~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~-~r~l~~~~~~ 216 (239)
+|||.++++++|+++|++|| .|..+++..+ ++|||||+|.+.++|.+|+..++|..++ ++.|++.++.
T Consensus 157 ~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~ 226 (229)
T 2adc_A 157 SNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSK 226 (229)
T ss_dssp ECCCTTCCHHHHHHHHHTTSCCEEEEEECSS-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECS
T ss_pred eCCCccCCHHHHHHHHHHcCCCeeEEEEEEC-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEec
Confidence 99999999999999999999 9999998653 3789999999999999999999999999 9999997653
No 21
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.90 E-value=9.7e-24 Score=161.58 Aligned_cols=123 Identities=19% Similarity=0.268 Sum_probs=102.3
Q ss_pred CCcceEEEEeCCHHHHHHHHH-hCCCccCCeeEEEecc--------------CCCCCCCCcEEEEcCCCCCCcHHHHHHH
Q psy14193 94 RTNMNAYVRFKNLESVEKALE-MNGHVIDEHTIRVDKA--------------LTTTKSNSHSIFIGNIPFEAEEEELRKA 158 (239)
Q Consensus 94 ~~~G~afV~f~~~e~a~~Ai~-~~~~~l~g~~i~v~~~--------------~~~~~~~~~~l~V~nLp~~~t~~~l~~~ 158 (239)
.++|||||+|.+.++|++|++ +++....+..+.+... ........++|||+|||+++++++|+++
T Consensus 11 ~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~ 90 (158)
T 2kn4_A 11 TLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLTYRTSPDTLRRV 90 (158)
T ss_dssp SCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESCCTTCCHHHHHHH
T ss_pred cccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHH
Confidence 588999999999999999998 6654332222222111 1111123789999999999999999999
Q ss_pred hhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeCCCC
Q psy14193 159 FESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTN 216 (239)
Q Consensus 159 F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~~~~ 216 (239)
|++||+|..+.++.++.+|.++|||||+|.+.++|.+|+..+||..++|+.|+|..+.
T Consensus 91 F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 148 (158)
T 2kn4_A 91 FEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMAR 148 (158)
T ss_dssp HHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEEC
T ss_pred HHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 9999999999999998899999999999999999999999999999999999998664
No 22
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.87 E-value=1.9e-22 Score=153.18 Aligned_cols=119 Identities=21% Similarity=0.282 Sum_probs=107.1
Q ss_pred CCCcceEEEEeCCHHHHHHHHH-h-CCCccCCeeEEEeccCCC-----------------CCCCCcEEEEcCCCCCCcHH
Q psy14193 93 KRTNMNAYVRFKNLESVEKALE-M-NGHVIDEHTIRVDKALTT-----------------TKSNSHSIFIGNIPFEAEEE 153 (239)
Q Consensus 93 ~~~~G~afV~f~~~e~a~~Ai~-~-~~~~l~g~~i~v~~~~~~-----------------~~~~~~~l~V~nLp~~~t~~ 153 (239)
...+|+++|+|.+.++|++|++ + |+..++| .+.+.++... ...+.++|||+|||+++|++
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~ 88 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNNGNKT 88 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCSCCSCH
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHH
Confidence 3567999999999999999999 8 9999999 9999887642 11237999999999999999
Q ss_pred HHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeCCCCC
Q psy14193 154 ELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNI 217 (239)
Q Consensus 154 ~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~~~~~ 217 (239)
+|+++|++||+|.+++++++ ++|||||+|.+.++|.+|+..+||..+.|+.|+|.++..
T Consensus 89 ~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 147 (150)
T 2i2y_A 89 ELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNG 147 (150)
T ss_dssp HHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCC
T ss_pred HHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCC
Confidence 99999999999999999876 589999999999999999999999999999999987643
No 23
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.85 E-value=4.6e-21 Score=153.69 Aligned_cols=101 Identities=25% Similarity=0.384 Sum_probs=89.9
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeCCC-
Q psy14193 137 NSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHT- 215 (239)
Q Consensus 137 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~~~- 215 (239)
+.++|||+|||+++|+++|+++|++||+|.+|++++|+.+|.++|||||+|.+.++|.+|+..++|..+.++.+++..+
T Consensus 14 p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~ 93 (213)
T 4f02_A 14 PMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQ 93 (213)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccccc
Confidence 4679999999999999999999999999999999999999999999999999999999999988888877776654321
Q ss_pred ----------------------------------------------CCCcceEEEEeCChHHHHhhhh
Q psy14193 216 ----------------------------------------------NIGKGFGYVNFKVSFTTLSSIF 237 (239)
Q Consensus 216 ----------------------------------------------~~~~G~~fv~f~~~~~a~~a~~ 237 (239)
+.++|||||+|.++++|.+||.
T Consensus 94 ~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~ 161 (213)
T 4f02_A 94 RDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIE 161 (213)
T ss_dssp CCTHHHHHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHH
T ss_pred ccccccccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHHH
Confidence 2358999999999999999985
No 24
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.84 E-value=7.7e-21 Score=134.26 Aligned_cols=79 Identities=24% Similarity=0.449 Sum_probs=76.0
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeCCC
Q psy14193 137 NSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHT 215 (239)
Q Consensus 137 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~~~ 215 (239)
..++|||+|||+++|+++|+++|++||+|.++++++|+.+|.++|||||+|.+.++|.+|+..+||..+.|+.|+|.++
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~A 96 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA 96 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 3679999999999999999999999999999999999999999999999999999999999999999999999999876
No 25
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.84 E-value=3.9e-20 Score=145.69 Aligned_cols=102 Identities=26% Similarity=0.543 Sum_probs=88.2
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHH----------------
Q psy14193 136 SNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE---------------- 199 (239)
Q Consensus 136 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~---------------- 199 (239)
.+.++|||+|||+++|+++|+++|++||+|.++.++.++.+|.++|||||+|.+.++|.+|+..
T Consensus 11 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~l~v~~~~ 90 (196)
T 1l3k_A 11 EQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAV 90 (196)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEECEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhcCCCEECCEEeeeeccc
Confidence 3478999999999999999999999999999999999988999999999999999999888853
Q ss_pred ------------------------------------hCCcEeeEEEEeeCCCCCCcceEEEEeCChHHHHhhhh
Q psy14193 200 ------------------------------------SCGEIDNVRLIRDQHTNIGKGFGYVNFKVSFTTLSSIF 237 (239)
Q Consensus 200 ------------------------------------~~g~~~~~r~l~~~~~~~~~G~~fv~f~~~~~a~~a~~ 237 (239)
-.|.+...+++++..++.++|||||+|.++++|.+||.
T Consensus 91 ~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~ 164 (196)
T 1l3k_A 91 SREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVI 164 (196)
T ss_dssp C-----------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH
T ss_pred CcccccccccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHH
Confidence 23334455555555677789999999999999999985
No 26
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.83 E-value=7.2e-20 Score=140.26 Aligned_cols=100 Identities=24% Similarity=0.464 Sum_probs=89.6
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeC----
Q psy14193 138 SHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQ---- 213 (239)
Q Consensus 138 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~---- 213 (239)
.++|||+|||+++++++|+++|++||+|.++.+++++.+|.++|||||+|.+.++|.+|+..++|..+.++.+++.
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 4799999999999999999999999999999999998899999999999999999999998888887766665442
Q ss_pred -------------------------------------------CCCCCcceEEEEeCChHHHHhhhh
Q psy14193 214 -------------------------------------------HTNIGKGFGYVNFKVSFTTLSSIF 237 (239)
Q Consensus 214 -------------------------------------------~~~~~~G~~fv~f~~~~~a~~a~~ 237 (239)
.++.++|||||+|.+.++|.+|+.
T Consensus 82 ~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~ 148 (167)
T 1fxl_A 82 SSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 148 (167)
T ss_dssp CCGGGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH
T ss_pred CcccCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHH
Confidence 345568999999999999999985
No 27
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.83 E-value=2.2e-20 Score=143.45 Aligned_cols=100 Identities=24% Similarity=0.505 Sum_probs=86.6
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHH---hCCc-----------
Q psy14193 138 SHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE---SCGE----------- 203 (239)
Q Consensus 138 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~---~~g~----------- 203 (239)
.++|||+|||+++|+++|+++|++||+|.++.+++++.+|.++|||||+|.+.++|.+|+.. ++|.
T Consensus 3 ~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~g~~i~v~~~~~~~ 82 (167)
T 2cjk_A 3 SCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKTQHILDGKVIDPKRAIPRD 82 (167)
T ss_dssp GGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHSCCEETTEECCCEECCCHH
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhcccccCCeEcccccccchh
Confidence 57999999999999999999999999999999999988999999999999999999988864 3333
Q ss_pred -------------------------------EeeEEEEeeCCCCCCcceEEEEeCChHHHHhhhh
Q psy14193 204 -------------------------------IDNVRLIRDQHTNIGKGFGYVNFKVSFTTLSSIF 237 (239)
Q Consensus 204 -------------------------------~~~~r~l~~~~~~~~~G~~fv~f~~~~~a~~a~~ 237 (239)
+...++++...++.++|||||+|.+.++|.+|+.
T Consensus 83 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~ 147 (167)
T 2cjk_A 83 EQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ 147 (167)
T ss_dssp HHHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH
T ss_pred hccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh
Confidence 3344444445577889999999999999999985
No 28
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.82 E-value=9e-20 Score=140.05 Aligned_cols=100 Identities=20% Similarity=0.371 Sum_probs=90.0
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeC----
Q psy14193 138 SHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQ---- 213 (239)
Q Consensus 138 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~---- 213 (239)
.++|||+|||+++++++|+++|++||+|.++.+++++.+|.++|||||+|.+.++|.+|+..++|..+.++.|++.
T Consensus 3 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 82 (168)
T 1b7f_A 3 NTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARP 82 (168)
T ss_dssp CSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecCC
Confidence 5799999999999999999999999999999999998899999999999999999999998888888877766553
Q ss_pred -------------------------------------------CCCCCcceEEEEeCChHHHHhhhh
Q psy14193 214 -------------------------------------------HTNIGKGFGYVNFKVSFTTLSSIF 237 (239)
Q Consensus 214 -------------------------------------------~~~~~~G~~fv~f~~~~~a~~a~~ 237 (239)
.++.++|||||+|.+.++|.+|+.
T Consensus 83 ~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~ 149 (168)
T 1b7f_A 83 GGESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAIS 149 (168)
T ss_dssp CSSTTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH
T ss_pred CcccCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHH
Confidence 244557999999999999999985
No 29
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.81 E-value=2.4e-19 Score=138.47 Aligned_cols=99 Identities=24% Similarity=0.497 Sum_probs=86.4
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCC--CCceEEEEEecChHHHHHHHHHhCCc------------
Q psy14193 138 SHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTN--IGKGFGYVNFKAEEEELRKAFESCGE------------ 203 (239)
Q Consensus 138 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg--~~kg~~fV~F~~~e~a~~a~~~~~g~------------ 203 (239)
.++|||+|||+++|+++|+++|++||+|.++++++++.++ .++|||||+|.+.++|.+|+..++|.
T Consensus 3 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~~ 82 (175)
T 3nmr_A 3 AIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQM 82 (175)
T ss_dssp CEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEE
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceEE
Confidence 5799999999999999999999999999999999998776 89999999999999999999766664
Q ss_pred ---------------------------------------EeeEEEEeeCCCCCCcceEEEEeCChHHHHhhhh
Q psy14193 204 ---------------------------------------IDNVRLIRDQHTNIGKGFGYVNFKVSFTTLSSIF 237 (239)
Q Consensus 204 ---------------------------------------~~~~r~l~~~~~~~~~G~~fv~f~~~~~a~~a~~ 237 (239)
+...++++.+ .+.++|||||+|.+.++|.+|+.
T Consensus 83 ~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~ 154 (175)
T 3nmr_A 83 KPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIK 154 (175)
T ss_dssp EECGGGCCSCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHH
T ss_pred ccccccccccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHH
Confidence 3344444443 47789999999999999999985
No 30
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.81 E-value=2.2e-19 Score=137.37 Aligned_cols=98 Identities=17% Similarity=0.386 Sum_probs=85.8
Q ss_pred cEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEee------
Q psy14193 139 HSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRD------ 212 (239)
Q Consensus 139 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~------ 212 (239)
++|||+|||.++|+++|+++|++||+|.++.++.++ ++.++|||||+|.+.++|.+|+..++|..+.++.+++
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 589999999999999999999999999999999995 5789999999999999999999888888776655543
Q ss_pred -------------------------------------------CCCCCCcceEEEEeCChHHHHhhhh
Q psy14193 213 -------------------------------------------QHTNIGKGFGYVNFKVSFTTLSSIF 237 (239)
Q Consensus 213 -------------------------------------------~~~~~~~G~~fv~f~~~~~a~~a~~ 237 (239)
..++.++|||||+|.++++|.+|+.
T Consensus 80 ~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~ 147 (166)
T 3md3_A 80 QQSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMD 147 (166)
T ss_dssp CCCCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHH
T ss_pred CCCCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH
Confidence 3445668999999999999999985
No 31
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.81 E-value=1.5e-19 Score=130.00 Aligned_cols=80 Identities=14% Similarity=0.108 Sum_probs=76.5
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeCCCC
Q psy14193 137 NSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTN 216 (239)
Q Consensus 137 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~~~~ 216 (239)
+.++|||+|||+++++++|+++|++||+|.++.++.|+.||.++|||||+|.+.++|.+|+..+||..+.|+.|+|..+.
T Consensus 5 p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a~ 84 (110)
T 3s8s_A 5 PLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLDI 84 (110)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999998764
No 32
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.81 E-value=8.7e-21 Score=141.51 Aligned_cols=118 Identities=19% Similarity=0.271 Sum_probs=79.0
Q ss_pred eEEEEeCCHHHHHHHHH-hCCCccCCeeEEEeccCCC-CCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCC
Q psy14193 98 NAYVRFKNLESVEKALE-MNGHVIDEHTIRVDKALTT-TKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQH 175 (239)
Q Consensus 98 ~afV~f~~~e~a~~Ai~-~~~~~l~g~~i~v~~~~~~-~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~ 175 (239)
++|.+|++...+..|++ +++....|+.- .....+. ...+.++|||+|||.++|+++|+++|++||+|..+.++.++.
T Consensus 6 ~~~~~~~~~~~~~~a~~~~~g~~~~g~~~-~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~ 84 (135)
T 2lea_A 6 HHHHHSSGLVPRGSHMASMTGGQQMGRGS-MSYGRPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRY 84 (135)
T ss_dssp ------------------------------CCSCCSCSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSS
T ss_pred cccccccCCCchhhhhhhccCCCCCCCCC-CCcCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCC
Confidence 78999999999999999 88877665532 2233322 223378999999999999999999999999999999999988
Q ss_pred CCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeCCCC
Q psy14193 176 TNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTN 216 (239)
Q Consensus 176 tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~~~~ 216 (239)
++.++|||||+|.+.++|.+|+..++|..+.++.|+|.++.
T Consensus 85 ~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~ 125 (135)
T 2lea_A 85 TKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMAR 125 (135)
T ss_dssp SSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECC
T ss_pred CCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 99999999999999999999999999999999999998764
No 33
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.80 E-value=7.5e-19 Score=140.36 Aligned_cols=100 Identities=22% Similarity=0.411 Sum_probs=86.5
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEee-----
Q psy14193 138 SHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRD----- 212 (239)
Q Consensus 138 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~----- 212 (239)
.++|||+|||.++|+++|+++|+.||+|.++.+++++.+|.++|||||+|.+.++|.+|+..++|..+.++.|++
T Consensus 28 ~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~~ 107 (216)
T 2qfj_A 28 MSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSN 107 (216)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCSC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCCC
Confidence 579999999999999999999999999999999999889999999999999999999999888876665554443
Q ss_pred -----------------------------------------------------CCCCCCcceEEEEeCChHHHHhhhh
Q psy14193 213 -----------------------------------------------------QHTNIGKGFGYVNFKVSFTTLSSIF 237 (239)
Q Consensus 213 -----------------------------------------------------~~~~~~~G~~fv~f~~~~~a~~a~~ 237 (239)
..+++++|||||+|.+.++|.+|+.
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~ 185 (216)
T 2qfj_A 108 IGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVS 185 (216)
T ss_dssp CGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH
T ss_pred ccccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHH
Confidence 3456679999999999999999985
No 34
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.78 E-value=1.7e-19 Score=126.18 Aligned_cols=80 Identities=18% Similarity=0.279 Sum_probs=73.8
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCC--eeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCc----EeeEEEE
Q psy14193 137 NSHSIFIGNIPFEAEEEELRKAFESCGE--IDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGE----IDNVRLI 210 (239)
Q Consensus 137 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~--i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~----~~~~r~l 210 (239)
.-.+|||+|||+++|+++|+++|++||. +.+|++++|+.+|.++|||||+|.+.++|.+|+..+||. .++||.|
T Consensus 8 ~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i 87 (95)
T 2lkz_A 8 HMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTI 87 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEE
T ss_pred ccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEE
Confidence 3579999999999999999999999995 678999999999999999999999999999999999997 5899999
Q ss_pred eeCCCC
Q psy14193 211 RDQHTN 216 (239)
Q Consensus 211 ~~~~~~ 216 (239)
.|.++.
T Consensus 88 ~V~~Ak 93 (95)
T 2lkz_A 88 GVDFAK 93 (95)
T ss_dssp EEEECC
T ss_pred EEEEcc
Confidence 998663
No 35
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.78 E-value=1.2e-19 Score=126.10 Aligned_cols=79 Identities=20% Similarity=0.351 Sum_probs=73.2
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhcCC-CeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHh-CCcEeeEEEEeeCCC
Q psy14193 138 SHSIFIGNIPFEAEEEELRKAFESCG-EIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFES-CGEIDNVRLIRDQHT 215 (239)
Q Consensus 138 ~~~l~V~nLp~~~t~~~l~~~F~~~G-~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~-~g~~~~~r~l~~~~~ 215 (239)
+++|||+|||+++|+++|+++|++|| +|.++++++|+.+|.++|||||+|.+.++|.+|+..+ ++..++|+.|+|..+
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 36899999999999999999999999 8999999999999999999999999999999999887 566799999999877
Q ss_pred C
Q psy14193 216 N 216 (239)
Q Consensus 216 ~ 216 (239)
.
T Consensus 81 ~ 81 (91)
T 2lxi_A 81 D 81 (91)
T ss_dssp C
T ss_pred C
Confidence 4
No 36
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.78 E-value=2.8e-19 Score=129.64 Aligned_cols=99 Identities=16% Similarity=0.357 Sum_probs=66.8
Q ss_pred ceeEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEEE
Q psy14193 23 KLKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVR 102 (239)
Q Consensus 23 ~~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV~ 102 (239)
..+|||+++......+ +|+++|++||+|.+|++ ++|. +.++|||||+
T Consensus 5 ~~~lfV~nLp~~~te~--------------~L~~~F~~~G~v~~v~i-----------------~~d~--~~~kg~afV~ 51 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNK--------------ALYDTFSAFGNILSCKV-----------------VCDE--NGSKGYGFVH 51 (115)
T ss_dssp CCEEEEESCCTTCCHH--------------HHHHHHGGGSCEEEEEE-----------------EEET--TEEEEEEEEE
T ss_pred CCEEEECCCCCCCCHH--------------HHHHHHhccCCEEEEEE-----------------eecC--CCCCceEEEE
Confidence 4579999876654444 99999999999999984 2222 3467999999
Q ss_pred eCCHHHHHHHHH-hCCCccCCeeEEEeccCCCCCCC---------CcEEEEcCCCCCCcHHH
Q psy14193 103 FKNLESVEKALE-MNGHVIDEHTIRVDKALTTTKSN---------SHSIFIGNIPFEAEEEE 154 (239)
Q Consensus 103 f~~~e~a~~Ai~-~~~~~l~g~~i~v~~~~~~~~~~---------~~~l~V~nLp~~~t~~~ 154 (239)
|.+.++|++|++ +++..+.|++|.|.++.++..+. ..+|||+|||+++|++.
T Consensus 52 f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~~~~~~~~~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 52 FETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp ESCHHHHHHHHHHHTTCEETTEECEEEESSCCCC----------------------------
T ss_pred ECCHHHHHHHHHHcCCCEECCEEEEEEECCCccccccccccccCCCCceEeCCCCCCccccc
Confidence 999999999999 99999999999999988765532 56799999999999864
No 37
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.78 E-value=1.4e-18 Score=118.26 Aligned_cols=79 Identities=22% Similarity=0.421 Sum_probs=75.2
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeCCCC
Q psy14193 138 SHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTN 216 (239)
Q Consensus 138 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~~~~ 216 (239)
+.+|||+|||.++++++|+++|++||+|.++.++.++.+|.++|||||+|.+.++|.+|+..+||..++|+.|++..+.
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 79 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAA 79 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecC
Confidence 3689999999999999999999999999999999998899999999999999999999999999999999999998764
No 38
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.77 E-value=1.7e-18 Score=118.46 Aligned_cols=79 Identities=22% Similarity=0.349 Sum_probs=75.2
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeCCC
Q psy14193 137 NSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHT 215 (239)
Q Consensus 137 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~~~ 215 (239)
+.++|||+|||+++++++|+++|++||+|..+.++.++.++.++|||||+|.+.++|.+|+..+||..+.|+.|++..+
T Consensus 6 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 6 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp CSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 4689999999999999999999999999999999999889999999999999999999999999999999999999754
No 39
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.76 E-value=4.1e-19 Score=123.07 Aligned_cols=78 Identities=19% Similarity=0.256 Sum_probs=72.0
Q ss_pred cEEEEcCCCCCCcHHHHHHHhhcCC--CeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeCCCC
Q psy14193 139 HSIFIGNIPFEAEEEELRKAFESCG--EIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTN 216 (239)
Q Consensus 139 ~~l~V~nLp~~~t~~~l~~~F~~~G--~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~~~~ 216 (239)
.+|||+|||+++|+++|+++|++|| .|.+++++.++.+|.++|||||+|.+.++|.+|+..+||..++|+.|+|..+.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 5799999999999999999999999 99999999998899999999999999999999999999999999999998764
No 40
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=4.3e-18 Score=118.86 Aligned_cols=80 Identities=21% Similarity=0.345 Sum_probs=76.4
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeCCCC
Q psy14193 137 NSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTN 216 (239)
Q Consensus 137 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~~~~ 216 (239)
+.++|||+|||.++++++|+++|++||+|..+.++.++.++.++|||||+|.+.++|.+|+..+||..+.++.|++..+.
T Consensus 14 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 93 (95)
T 2cqc_A 14 PNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSGPS 93 (95)
T ss_dssp GGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCS
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEecC
Confidence 47899999999999999999999999999999999998899999999999999999999999999999999999998764
No 41
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.76 E-value=2.7e-18 Score=120.32 Aligned_cols=80 Identities=20% Similarity=0.422 Sum_probs=76.1
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeCCCCC
Q psy14193 138 SHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNI 217 (239)
Q Consensus 138 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~~~~~ 217 (239)
.++|||+|||.++++++|+++|++||.|.++.++.++.+|.++|||||+|.+.++|.+|+..++|..++|+.|++..+..
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 57999999999999999999999999999999999988999999999999999999999999999999999999987743
No 42
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.76 E-value=2.7e-18 Score=117.92 Aligned_cols=79 Identities=24% Similarity=0.437 Sum_probs=74.9
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeCCC
Q psy14193 137 NSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHT 215 (239)
Q Consensus 137 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~~~ 215 (239)
+.++|||+|||.++++++|+++|++||+|.++.++.++.+|.++|||||+|.+.++|.+|+..+||..++|+.|++..+
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 3579999999999999999999999999999999999889999999999999999999999999999999999999765
No 43
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.3e-18 Score=119.11 Aligned_cols=79 Identities=19% Similarity=0.339 Sum_probs=75.4
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeCCC
Q psy14193 137 NSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHT 215 (239)
Q Consensus 137 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~~~ 215 (239)
+.++|||+|||+++++++|+++|++||+|..+.++.++.+|.++|||||+|.+.++|.+|+..+||..+.|+.+++++.
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 3679999999999999999999999999999999999889999999999999999999999999999999999999765
No 44
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.76 E-value=4.8e-18 Score=116.74 Aligned_cols=79 Identities=19% Similarity=0.443 Sum_probs=72.5
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeCC
Q psy14193 135 KSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQH 214 (239)
Q Consensus 135 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~~ 214 (239)
..+.++|||+|||+++++++|+++|++||+|..+.++.++.+|.++|||||+|.+.++|.+|+ .++|..+.|+.|+|+.
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~~~~~~~~g~~i~v~~ 86 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVL-DQKEHRLDGRVIDPKK 86 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHH-HSSCEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHH-HhCCCEECCEEEEEEe
Confidence 345789999999999999999999999999999999999889999999999999999888887 5588899999999864
No 45
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.75 E-value=3.6e-18 Score=131.55 Aligned_cols=115 Identities=20% Similarity=0.291 Sum_probs=76.1
Q ss_pred EEeCCHHHHHHHHH-hCCCccC--CeeEEEeccC---------------------CCCCCCCcEEEEcCCCCCCcHHHHH
Q psy14193 101 VRFKNLESVEKALE-MNGHVID--EHTIRVDKAL---------------------TTTKSNSHSIFIGNIPFEAEEEELR 156 (239)
Q Consensus 101 V~f~~~e~a~~Ai~-~~~~~l~--g~~i~v~~~~---------------------~~~~~~~~~l~V~nLp~~~t~~~l~ 156 (239)
.+|.+.++|+.|+. +++.... |+.....+.. +....+.++|||+|||+.+++++|+
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~ 90 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDEIQ 90 (165)
T ss_dssp -------------------------------------------------------CCCCC-CEEEEEESCCTTCCHHHHH
T ss_pred hhhhccccccccchhhccccccccCCCCCCCccccccccCccccccCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHH
Confidence 78889999999988 7776553 4444433211 1112236789999999999999999
Q ss_pred HHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeCCC
Q psy14193 157 KAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHT 215 (239)
Q Consensus 157 ~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~~~ 215 (239)
++|++||+|..|.++.++.+|.++|||||+|.+.++|..|+..+||..+.|+.|.|.++
T Consensus 91 ~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 149 (165)
T 1rk8_A 91 EKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 149 (165)
T ss_dssp HHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred HHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 99999999999999999889999999999999999999999999999999999999765
No 46
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.75 E-value=3.2e-18 Score=120.59 Aligned_cols=81 Identities=20% Similarity=0.182 Sum_probs=76.0
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeE--------EEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEee
Q psy14193 135 KSNSHSIFIGNIPFEAEEEELRKAFESCGEIDN--------VRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDN 206 (239)
Q Consensus 135 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~ 206 (239)
..+.++|||+|||.++++++|+++|++||.|.. ++++.++.+|.++|||||+|.+.++|.+|+..+||..++
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~ 89 (99)
T 2la6_A 10 HSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 89 (99)
T ss_dssp CCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 344789999999999999999999999999999 999999889999999999999999999999999999999
Q ss_pred EEEEeeCCC
Q psy14193 207 VRLIRDQHT 215 (239)
Q Consensus 207 ~r~l~~~~~ 215 (239)
|+.|+|..+
T Consensus 90 g~~l~V~~A 98 (99)
T 2la6_A 90 GNPIKVSFA 98 (99)
T ss_dssp SSBCEEEEC
T ss_pred CcEEEEEec
Confidence 999998754
No 47
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.75 E-value=5.3e-19 Score=124.97 Aligned_cols=78 Identities=17% Similarity=0.217 Sum_probs=74.6
Q ss_pred CcEEEEcCCCC------CCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeE-EEE
Q psy14193 138 SHSIFIGNIPF------EAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNV-RLI 210 (239)
Q Consensus 138 ~~~l~V~nLp~------~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~-r~l 210 (239)
.++|||+|||. ++++++|+++|++||+|.+++++.++.||.++|||||+|.+.++|.+|+..+||..+.| +.|
T Consensus 6 ~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~l 85 (100)
T 3ns6_A 6 DQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHRL 85 (100)
T ss_dssp GGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCBC
T ss_pred CcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeEE
Confidence 57999999999 99999999999999999999999999899999999999999999999999999999999 999
Q ss_pred eeCCC
Q psy14193 211 RDQHT 215 (239)
Q Consensus 211 ~~~~~ 215 (239)
+|..+
T Consensus 86 ~V~~a 90 (100)
T 3ns6_A 86 FLYTM 90 (100)
T ss_dssp EEEES
T ss_pred EEEEC
Confidence 99754
No 48
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.75 E-value=4.9e-18 Score=117.11 Aligned_cols=78 Identities=27% Similarity=0.503 Sum_probs=74.3
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeCCCC
Q psy14193 138 SHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTN 216 (239)
Q Consensus 138 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~~~~ 216 (239)
.++|||+|||+++++++|+++|++||+|..+.++.++.++.++|||||+|.+.++|.+|+ .+||..+.++.|++..+.
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 469999999999999999999999999999999999889999999999999999999999 999999999999998764
No 49
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=4.4e-18 Score=118.60 Aligned_cols=80 Identities=18% Similarity=0.386 Sum_probs=75.7
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeCCC
Q psy14193 136 SNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHT 215 (239)
Q Consensus 136 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~~~ 215 (239)
.+.++|||+|||.++++++|+++|++||+|..+.++.++.++.++|||||+|.+.++|.+|+..+||..+.++.|++..+
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 93 (94)
T 2e5h_A 14 PSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASIA 93 (94)
T ss_dssp CCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEec
Confidence 34789999999999999999999999999999999999888999999999999999999999999999999999999754
No 50
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=5.2e-18 Score=120.32 Aligned_cols=81 Identities=21% Similarity=0.395 Sum_probs=76.8
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeCCC
Q psy14193 136 SNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHT 215 (239)
Q Consensus 136 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~~~ 215 (239)
.+.++|||+|||.++++++|+++|++||+|..+.++.++.++.++|||||+|.+.++|.+|+..+||..+.++.|+|..+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 92 (103)
T 2cq0_A 13 DDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWA 92 (103)
T ss_dssp SSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEC
Confidence 34789999999999999999999999999999999999889999999999999999999999999999999999999866
Q ss_pred C
Q psy14193 216 N 216 (239)
Q Consensus 216 ~ 216 (239)
.
T Consensus 93 ~ 93 (103)
T 2cq0_A 93 K 93 (103)
T ss_dssp S
T ss_pred C
Confidence 4
No 51
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.75 E-value=7.6e-19 Score=135.99 Aligned_cols=101 Identities=23% Similarity=0.328 Sum_probs=86.6
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeCC
Q psy14193 135 KSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQH 214 (239)
Q Consensus 135 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~~ 214 (239)
..+.++|||+|||.++|+++|+++|+.||.+.. .++.+..+|.++|||||+|.+.++|.+|+ .++|..+.|+.|++..
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~v~~ 87 (175)
T 1fje_B 10 STTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKVFGNEIKLEK 87 (175)
T ss_dssp CSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHH-HGGGEEETTEEEEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHH-hcCCCEeCCeEEEEec
Confidence 344789999999999999999999999997766 33444467889999999999999999999 6999999999887754
Q ss_pred C--------------------------------------------CCCcceEEEEeCChHHHHhhhh
Q psy14193 215 T--------------------------------------------NIGKGFGYVNFKVSFTTLSSIF 237 (239)
Q Consensus 215 ~--------------------------------------------~~~~G~~fv~f~~~~~a~~a~~ 237 (239)
+ +.++|||||+|.+.++|.+|+.
T Consensus 88 ~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~~~~~~~~g~afV~f~~~~~A~~A~~ 154 (175)
T 1fje_B 88 PKGRDSKKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLE 154 (175)
T ss_dssp CCCSSCSTTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEECSSSSCCSEEEEECSSHHHHHHHHH
T ss_pred CCCccccccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEecCCCCCceEEEEEECCHHHHHHHHH
Confidence 3 3458999999999999999986
No 52
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.75 E-value=8.8e-18 Score=117.30 Aligned_cols=80 Identities=25% Similarity=0.317 Sum_probs=75.0
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeCCC
Q psy14193 136 SNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHT 215 (239)
Q Consensus 136 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~~~ 215 (239)
.+.++|||+|||+++++++|+++|++||+|..+.++.++ +|.++|||||+|.+.++|.+|+..+||..+.++.|+|..+
T Consensus 14 ~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (95)
T 2ywk_A 14 EADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDR-EGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGP 92 (95)
T ss_dssp TGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEc
Confidence 347899999999999999999999999999999999996 4899999999999999999999999999999999999876
Q ss_pred C
Q psy14193 216 N 216 (239)
Q Consensus 216 ~ 216 (239)
.
T Consensus 93 ~ 93 (95)
T 2ywk_A 93 S 93 (95)
T ss_dssp C
T ss_pred C
Confidence 3
No 53
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=5.5e-18 Score=119.29 Aligned_cols=80 Identities=25% Similarity=0.436 Sum_probs=75.8
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeCCCC
Q psy14193 137 NSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTN 216 (239)
Q Consensus 137 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~~~~ 216 (239)
+.++|||+|||.++++++|+++|++||+|..+.++.++.++.++|||||+|.+.++|.+|+..+||..+.++.|+|..+.
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 86 (99)
T 1whw_A 7 GSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPST 86 (99)
T ss_dssp SCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 46899999999999999999999999999999999998899999999999999999999999999999999999997654
No 54
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.75 E-value=5.1e-18 Score=122.94 Aligned_cols=76 Identities=28% Similarity=0.416 Sum_probs=71.0
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeCCC
Q psy14193 138 SHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHT 215 (239)
Q Consensus 138 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~~~ 215 (239)
..+|||+|||+++|+++|+++|++||+|.+++++++. +.++|||||+|.+.++|.+|+..++|..++|+.|+|..+
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a 80 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRF 80 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 4689999999999999999999999999999999985 458999999999999999999999999999999999754
No 55
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=6.9e-18 Score=119.06 Aligned_cols=80 Identities=24% Similarity=0.500 Sum_probs=75.6
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeCCC
Q psy14193 136 SNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHT 215 (239)
Q Consensus 136 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~~~ 215 (239)
.+.++|||+|||.++++++|+++|++||+|..+.++.++ +|.++|||||+|.+.++|.+|+..+||..+.++.|+|..+
T Consensus 15 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 93 (100)
T 2do4_A 15 LEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAIS 93 (100)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 347899999999999999999999999999999999997 8999999999999999999999999999999999999876
Q ss_pred C
Q psy14193 216 N 216 (239)
Q Consensus 216 ~ 216 (239)
.
T Consensus 94 ~ 94 (100)
T 2do4_A 94 N 94 (100)
T ss_dssp C
T ss_pred C
Confidence 4
No 56
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.75 E-value=8.6e-18 Score=121.63 Aligned_cols=80 Identities=20% Similarity=0.357 Sum_probs=76.4
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeCCCC
Q psy14193 137 NSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTN 216 (239)
Q Consensus 137 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~~~~ 216 (239)
+.++|||+|||.++++++|+++|+.||.|..+.++.++.++.++|||||+|.+.++|.+|+..+||..+.++.|+|..+.
T Consensus 24 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 103 (115)
T 2cpz_A 24 EGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKR 103 (115)
T ss_dssp TTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcC
Confidence 46899999999999999999999999999999999998899999999999999999999999999999999999998764
No 57
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.74 E-value=1.2e-17 Score=120.85 Aligned_cols=81 Identities=27% Similarity=0.488 Sum_probs=76.5
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeCCC
Q psy14193 136 SNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHT 215 (239)
Q Consensus 136 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~~~ 215 (239)
.+.++|||+|||.++++++|+++|+.||.|..+.++.++.++.++|||||+|.+.++|.+|+..++|..+.++.|+|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (115)
T 2dgo_A 13 SNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 92 (115)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 34789999999999999999999999999999999999889999999999999999999999999999999999999865
Q ss_pred C
Q psy14193 216 N 216 (239)
Q Consensus 216 ~ 216 (239)
.
T Consensus 93 ~ 93 (115)
T 2dgo_A 93 T 93 (115)
T ss_dssp S
T ss_pred c
Confidence 3
No 58
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=5.3e-18 Score=119.38 Aligned_cols=80 Identities=20% Similarity=0.309 Sum_probs=75.8
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCCee-EEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEE----Ee
Q psy14193 137 NSHSIFIGNIPFEAEEEELRKAFESCGEID-NVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRL----IR 211 (239)
Q Consensus 137 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~-~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~----l~ 211 (239)
+.++|||+|||+++++++|+++|++||+|. .+++++++.++.++|||||+|.+.++|.+|+..+||..+.++. |+
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l~ 87 (99)
T 2div_A 8 MAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFK 87 (99)
T ss_dssp SSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeEE
Confidence 478999999999999999999999999999 9999999889999999999999999999999999999999999 88
Q ss_pred eCCCC
Q psy14193 212 DQHTN 216 (239)
Q Consensus 212 ~~~~~ 216 (239)
+.++.
T Consensus 88 v~~a~ 92 (99)
T 2div_A 88 LNYAT 92 (99)
T ss_dssp EEETT
T ss_pred EeecC
Confidence 87664
No 59
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.74 E-value=6.6e-18 Score=120.99 Aligned_cols=82 Identities=24% Similarity=0.458 Sum_probs=77.3
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeCC
Q psy14193 135 KSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQH 214 (239)
Q Consensus 135 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~~ 214 (239)
..+.++|||+|||.++++++|+++|++||+|..+.++.++.+|.++|||||+|.+.++|.+|+..++|..+.|+.|+|..
T Consensus 23 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~ 102 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGH 102 (108)
T ss_dssp CSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 34478999999999999999999999999999999999988999999999999999999999999999999999999987
Q ss_pred CC
Q psy14193 215 TN 216 (239)
Q Consensus 215 ~~ 216 (239)
+.
T Consensus 103 a~ 104 (108)
T 2jrs_A 103 VT 104 (108)
T ss_dssp SC
T ss_pred cc
Confidence 64
No 60
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=6.3e-18 Score=118.05 Aligned_cols=80 Identities=31% Similarity=0.523 Sum_probs=75.7
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeCCCC
Q psy14193 137 NSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTN 216 (239)
Q Consensus 137 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~~~~ 216 (239)
+.++|||+|||.++++++|+++|++||+|..+.++.++.++.++|||||+|.+.++|.+|+..+||..+.++.|+|..+.
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 83 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVT 83 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEESS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcc
Confidence 36799999999999999999999999999999999998899999999999999999999999999999999999997653
No 61
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.74 E-value=1.3e-18 Score=153.34 Aligned_cols=79 Identities=15% Similarity=0.393 Sum_probs=75.5
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeCCC
Q psy14193 137 NSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHT 215 (239)
Q Consensus 137 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~~~ 215 (239)
+.++|||+|||+.+|+++|.++|++||.|..|.|+.+..+|.++|||||+|.+.++|..|+..|||..+.|+.|.|.++
T Consensus 101 ~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 101 AFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 3679999999999999999999999999999999999889999999999999999999999999999999999999865
No 62
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=8e-18 Score=118.50 Aligned_cols=80 Identities=26% Similarity=0.419 Sum_probs=74.8
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeCCC
Q psy14193 136 SNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHT 215 (239)
Q Consensus 136 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~~~ 215 (239)
.+.++|||+|||.++++++|+++|++||+|..+.++.++.++.++|||||+|.+.++|.+|+. ++|..+.++.|+|..+
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~a 86 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKRA 86 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEEC
Confidence 347899999999999999999999999999999999998899999999999999999999987 9999999999999765
Q ss_pred C
Q psy14193 216 N 216 (239)
Q Consensus 216 ~ 216 (239)
.
T Consensus 87 ~ 87 (99)
T 2dgs_A 87 E 87 (99)
T ss_dssp C
T ss_pred C
Confidence 4
No 63
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=1.1e-17 Score=120.09 Aligned_cols=81 Identities=22% Similarity=0.416 Sum_probs=76.8
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhC------CcEeeEEE
Q psy14193 136 SNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESC------GEIDNVRL 209 (239)
Q Consensus 136 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~------g~~~~~r~ 209 (239)
.+.++|||+|||+++++++|+++|++||+|..|.++.++.++.++|||||+|.+.++|.+|+..++ |..+.++.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~ 92 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQ 92 (111)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEE
Confidence 347899999999999999999999999999999999999899999999999999999999999999 99999999
Q ss_pred EeeCCCC
Q psy14193 210 IRDQHTN 216 (239)
Q Consensus 210 l~~~~~~ 216 (239)
|+|..+.
T Consensus 93 l~v~~a~ 99 (111)
T 1x4h_A 93 LKVDLAV 99 (111)
T ss_dssp EEEECCC
T ss_pred EEEEECC
Confidence 9998764
No 64
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=3.3e-18 Score=121.39 Aligned_cols=81 Identities=22% Similarity=0.417 Sum_probs=76.6
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeCCC
Q psy14193 136 SNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHT 215 (239)
Q Consensus 136 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~~~ 215 (239)
.+.++|||+|||.++++++|+++|++||.|..+.++.++.++.++|||||+|.+.++|.+|+..+||..+.++.|+|..+
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2dnm_A 11 DGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVA 90 (103)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEC
Confidence 34789999999999999999999999999999999999889999999999999999999999999999999999999866
Q ss_pred C
Q psy14193 216 N 216 (239)
Q Consensus 216 ~ 216 (239)
.
T Consensus 91 ~ 91 (103)
T 2dnm_A 91 R 91 (103)
T ss_dssp S
T ss_pred C
Confidence 4
No 65
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.74 E-value=9e-18 Score=120.52 Aligned_cols=80 Identities=25% Similarity=0.377 Sum_probs=76.1
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeCCC
Q psy14193 136 SNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHT 215 (239)
Q Consensus 136 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~~~ 215 (239)
.+.++|||+|||.++++++|+++|++||+|..+.++.++.+|.++|||||+|.+.++|.+|+..++|..++|+.|+|..+
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 103 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 103 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEc
Confidence 34789999999999999999999999999999999999889999999999999999999999999999999999999865
No 66
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=6.6e-18 Score=120.39 Aligned_cols=79 Identities=24% Similarity=0.300 Sum_probs=75.5
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeCCC
Q psy14193 137 NSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHT 215 (239)
Q Consensus 137 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~~~ 215 (239)
+.++|||+|||.++++++|+++|++||+|..+.++.++.+|.++|||||+|.+.++|.+|+..+||..+.|+.|+|..+
T Consensus 22 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 100 (106)
T 1p27_B 22 EGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 100 (106)
T ss_dssp TBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEee
Confidence 4789999999999999999999999999999999999989999999999999999999999999999999999999765
No 67
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=6.4e-18 Score=119.61 Aligned_cols=80 Identities=21% Similarity=0.348 Sum_probs=76.1
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeCCCC
Q psy14193 137 NSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTN 216 (239)
Q Consensus 137 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~~~~ 216 (239)
+.++|||+|||.++++++|+++|++||+|..+.++.++.++.++|||||+|.+.++|.+|+..+||..+.++.|+|..+.
T Consensus 11 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 90 (102)
T 2cqb_A 11 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAK 90 (102)
T ss_dssp CCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeCC
Confidence 47899999999999999999999999999999999998899999999999999999999999999999999999997654
No 68
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.74 E-value=7.8e-18 Score=122.37 Aligned_cols=79 Identities=20% Similarity=0.355 Sum_probs=75.2
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeCCC
Q psy14193 137 NSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHT 215 (239)
Q Consensus 137 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~~~ 215 (239)
+.++|||+|||+++++++|+++|++||+|..++++.++.+|.++|||||+|.+.++|.+|+..+||..++++.|+|..+
T Consensus 39 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 117 (118)
T 2khc_A 39 EGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQLK 117 (118)
T ss_dssp CSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEec
Confidence 4789999999999999999999999999999999999889999999999999999999999999999999999998754
No 69
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=9e-18 Score=117.97 Aligned_cols=80 Identities=23% Similarity=0.439 Sum_probs=74.6
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCC---CCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeC
Q psy14193 137 NSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQH---TNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQ 213 (239)
Q Consensus 137 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~---tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~ 213 (239)
+.++|||+|||.++++++|+++|++||+|..+.++.++. ++.++|||||+|.+.++|.+|+..+||..+.++.|+|.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVR 83 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 357999999999999999999999999999999998875 66899999999999999999999999999999999998
Q ss_pred CCC
Q psy14193 214 HTN 216 (239)
Q Consensus 214 ~~~ 216 (239)
.+.
T Consensus 84 ~a~ 86 (98)
T 2cpf_A 84 ISE 86 (98)
T ss_dssp CSS
T ss_pred Ecc
Confidence 764
No 70
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=5.2e-18 Score=118.69 Aligned_cols=80 Identities=28% Similarity=0.368 Sum_probs=75.7
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEE-EEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeCCC
Q psy14193 137 NSHSIFIGNIPFEAEEEELRKAFESCGEIDNV-RLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHT 215 (239)
Q Consensus 137 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v-~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~~~ 215 (239)
+.++|||+|||.++++++|+++|++||.|..+ +++.++.++.++|||||+|.+.++|.+|+..+||..+.++.|+|..+
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 83 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 36799999999999999999999999999999 99999889999999999999999999999999999999999999865
Q ss_pred C
Q psy14193 216 N 216 (239)
Q Consensus 216 ~ 216 (239)
.
T Consensus 84 ~ 84 (96)
T 1x5t_A 84 F 84 (96)
T ss_dssp C
T ss_pred c
Confidence 3
No 71
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=5.9e-18 Score=120.44 Aligned_cols=81 Identities=20% Similarity=0.270 Sum_probs=76.6
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeCCC
Q psy14193 136 SNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHT 215 (239)
Q Consensus 136 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~~~ 215 (239)
.+.++|||+|||.++++++|+++|++||+|..+.++.++.++.++|||||+|.+.++|.+|+..++|..+.++.|+|..+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 92 (105)
T 1x5u_A 13 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKA 92 (105)
T ss_dssp CTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEC
Confidence 34789999999999999999999999999999999999889999999999999999999999999999999999999866
Q ss_pred C
Q psy14193 216 N 216 (239)
Q Consensus 216 ~ 216 (239)
.
T Consensus 93 ~ 93 (105)
T 1x5u_A 93 S 93 (105)
T ss_dssp T
T ss_pred C
Confidence 4
No 72
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.73 E-value=5e-18 Score=116.76 Aligned_cols=81 Identities=16% Similarity=0.276 Sum_probs=74.6
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCC-CceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeCCCC
Q psy14193 138 SHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNI-GKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTN 216 (239)
Q Consensus 138 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~-~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~~~~ 216 (239)
.++|||+|||.++++++|+++|++||+|.++.++.+..++. ++|||||+|.+.++|.+|+..+||..++|+.|++..+.
T Consensus 4 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 83 (88)
T 4a8x_A 4 PTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVL 83 (88)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEECC
Confidence 57999999999999999999999999999999999977665 89999999999999999999999999999999998664
Q ss_pred CC
Q psy14193 217 IG 218 (239)
Q Consensus 217 ~~ 218 (239)
.+
T Consensus 84 ~~ 85 (88)
T 4a8x_A 84 AP 85 (88)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 73
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.73 E-value=1.3e-17 Score=137.55 Aligned_cols=94 Identities=26% Similarity=0.456 Sum_probs=82.8
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeC----
Q psy14193 138 SHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQ---- 213 (239)
Q Consensus 138 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~---- 213 (239)
.++|||+|||+++|+++|+++|++||.|..+.+.+ ++|||||+|.+.++|.+|+..++|..+.++.|++.
T Consensus 22 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~------~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~ 95 (261)
T 3sde_A 22 RCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINR------DRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATH 95 (261)
T ss_dssp GGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeeccc
Confidence 68999999999999999999999999999998864 37899999999999999998888887766666543
Q ss_pred ------------------------------------CCCCCcceEEEEeCChHHHHhhhh
Q psy14193 214 ------------------------------------HTNIGKGFGYVNFKVSFTTLSSIF 237 (239)
Q Consensus 214 ------------------------------------~~~~~~G~~fv~f~~~~~a~~a~~ 237 (239)
.+++++|||||+|.+.++|.+||.
T Consensus 96 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~ 155 (261)
T 3sde_A 96 GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALE 155 (261)
T ss_dssp SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHH
T ss_pred CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHH
Confidence 345569999999999999999985
No 74
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.73 E-value=1e-17 Score=127.78 Aligned_cols=79 Identities=13% Similarity=0.259 Sum_probs=75.0
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhcCC--CeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeCCC
Q psy14193 138 SHSIFIGNIPFEAEEEELRKAFESCG--EIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHT 215 (239)
Q Consensus 138 ~~~l~V~nLp~~~t~~~l~~~F~~~G--~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~~~ 215 (239)
.++|||+|||+++|+++|+++|+.|| .|.+++++.|+.+|.++|||||+|.+.++|.+|+..+||..++|+.|+|..+
T Consensus 55 ~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~a 134 (156)
T 3n9u_C 55 RAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRPA 134 (156)
T ss_dssp -CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEEc
Confidence 57999999999999999999999999 9999999999999999999999999999999999999999999999999765
Q ss_pred C
Q psy14193 216 N 216 (239)
Q Consensus 216 ~ 216 (239)
.
T Consensus 135 ~ 135 (156)
T 3n9u_C 135 T 135 (156)
T ss_dssp C
T ss_pred C
Confidence 3
No 75
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.73 E-value=1.8e-17 Score=117.57 Aligned_cols=79 Identities=27% Similarity=0.462 Sum_probs=74.1
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeCCC
Q psy14193 136 SNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHT 215 (239)
Q Consensus 136 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~~~ 215 (239)
.+.++|||+|||.++++++|+++|++|| |..++++.++.++.++|||||+|.+.++|.+|+ .+||..+.++.|+|..+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 90 (103)
T 2dng_A 13 EPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDIA 90 (103)
T ss_dssp SSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEEe
Confidence 3478999999999999999999999997 999999999889999999999999999999999 99999999999999865
Q ss_pred C
Q psy14193 216 N 216 (239)
Q Consensus 216 ~ 216 (239)
.
T Consensus 91 ~ 91 (103)
T 2dng_A 91 E 91 (103)
T ss_dssp C
T ss_pred c
Confidence 3
No 76
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.6e-17 Score=119.79 Aligned_cols=82 Identities=15% Similarity=0.196 Sum_probs=76.8
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhcCCCee--------EEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEee
Q psy14193 135 KSNSHSIFIGNIPFEAEEEELRKAFESCGEID--------NVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDN 206 (239)
Q Consensus 135 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~--------~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~ 206 (239)
..+.++|||+|||.++++++|+++|++||.|. .++++.++.+|.++|||||+|.+.++|.+|+..+||..+.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 91 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQ 91 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccC
Confidence 34578999999999999999999999999999 6999999889999999999999999999999999999999
Q ss_pred EEEEeeCCCC
Q psy14193 207 VRLIRDQHTN 216 (239)
Q Consensus 207 ~r~l~~~~~~ 216 (239)
++.|+|..+.
T Consensus 92 g~~l~V~~a~ 101 (113)
T 2cpe_A 92 GSKLKVSLAR 101 (113)
T ss_dssp TEECEEECSS
T ss_pred CCEEEEEECC
Confidence 9999998764
No 77
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.73 E-value=2.6e-18 Score=114.72 Aligned_cols=75 Identities=25% Similarity=0.465 Sum_probs=69.4
Q ss_pred EEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeCCC
Q psy14193 140 SIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHT 215 (239)
Q Consensus 140 ~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~~~ 215 (239)
+|||+|||+++++++|+++|++||+|..+.++.++.+|.++|||||+|.+.++|.+|+. ++|..++|+.|+++.+
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 58999999999999999999999999999999998899999999999999998877665 9999999999998753
No 78
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.73 E-value=7.7e-18 Score=117.60 Aligned_cols=79 Identities=15% Similarity=0.207 Sum_probs=74.9
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeCCCC
Q psy14193 138 SHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTN 216 (239)
Q Consensus 138 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~~~~ 216 (239)
.++|||+|||+++++++|+++|++||.|..+.++.++.++.++|||||+|.+.++|.+|+..+||..+.++.|+|..+.
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 15 PTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence 6899999999999999999999999999999999988899999999999999999999999999999999999998653
No 79
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.73 E-value=6.5e-18 Score=120.40 Aligned_cols=83 Identities=23% Similarity=0.446 Sum_probs=76.6
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEe---eEEEE
Q psy14193 134 TKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEID---NVRLI 210 (239)
Q Consensus 134 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~---~~r~l 210 (239)
...+.++|||+|||.++++++|+++|++||+|..+.++.++.+|.++|||||+|.+.++|.+|+..+||..+ .++.|
T Consensus 9 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l 88 (106)
T 2dgp_A 9 KDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPI 88 (106)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceE
Confidence 334578999999999999999999999999999999999988999999999999999999999999999988 88999
Q ss_pred eeCCCC
Q psy14193 211 RDQHTN 216 (239)
Q Consensus 211 ~~~~~~ 216 (239)
+|..+.
T Consensus 89 ~v~~a~ 94 (106)
T 2dgp_A 89 QVKPAD 94 (106)
T ss_dssp EEEECC
T ss_pred EEEECC
Confidence 987653
No 80
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.73 E-value=1.9e-17 Score=131.89 Aligned_cols=71 Identities=10% Similarity=0.096 Sum_probs=65.3
Q ss_pred CcEEEEcCCC-CCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeC
Q psy14193 138 SHSIFIGNIP-FEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQ 213 (239)
Q Consensus 138 ~~~l~V~nLp-~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~ 213 (239)
.++|||+||| +.+++++|+++|++||.|.+++++++ ++|||||+|.+.++|..|+..|||..+.|+.|+|.
T Consensus 4 ~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~ 75 (205)
T 3tyt_A 4 SPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVC 75 (205)
T ss_dssp CSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEE
Confidence 5799999999 89999999999999999999999865 47999999999999999999999999988887665
No 81
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.73 E-value=1.9e-17 Score=118.16 Aligned_cols=79 Identities=15% Similarity=0.281 Sum_probs=74.8
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeCCC
Q psy14193 136 SNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHT 215 (239)
Q Consensus 136 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~~~ 215 (239)
.+.++|||+|||+.+++++|+++|++||.|..+.++.++ +|.++|||||+|.+.++|.+|+..++|..+.++.|+|..+
T Consensus 27 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 105 (107)
T 3ulh_A 27 ETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLV 105 (107)
T ss_dssp CCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 347899999999999999999999999999999999997 9999999999999999999999999999999999999754
No 82
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=3.5e-18 Score=121.37 Aligned_cols=76 Identities=20% Similarity=0.265 Sum_probs=70.6
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeCC
Q psy14193 137 NSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQH 214 (239)
Q Consensus 137 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~~ 214 (239)
+.++|||+|||+++|+++|+++|++||+|.+|++++++. |.++|||||+|.+.++|..|+. ++|..++|+.|+|.+
T Consensus 10 ~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~ 85 (103)
T 1s79_A 10 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILF 85 (103)
T ss_dssp GGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEE
Confidence 367999999999999999999999999999999999976 9999999999999998888887 899999999998864
No 83
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=1.3e-17 Score=119.01 Aligned_cols=81 Identities=26% Similarity=0.467 Sum_probs=76.1
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeec-CCCCCCceEEEEEecChHHHHHHHHHh-CCcEeeEEEEeeC
Q psy14193 136 SNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRD-QHTNIGKGFGYVNFKAEEEELRKAFES-CGEIDNVRLIRDQ 213 (239)
Q Consensus 136 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-~~tg~~kg~~fV~F~~~e~a~~a~~~~-~g~~~~~r~l~~~ 213 (239)
.+.++|||+|||.++++++|+++|++||+|..+.++.+ +.++.++|||||+|.+.++|.+|+..+ ||..+.++.|+|.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v~ 92 (107)
T 2cph_A 13 QTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLE 92 (107)
T ss_dssp SCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEEE
Confidence 34789999999999999999999999999999999998 779999999999999999999999999 9999999999997
Q ss_pred CCC
Q psy14193 214 HTN 216 (239)
Q Consensus 214 ~~~ 216 (239)
.+.
T Consensus 93 ~a~ 95 (107)
T 2cph_A 93 WAD 95 (107)
T ss_dssp ECC
T ss_pred eCC
Confidence 664
No 84
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.72 E-value=1.2e-17 Score=123.38 Aligned_cols=82 Identities=21% Similarity=0.335 Sum_probs=77.5
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeCCC
Q psy14193 136 SNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHT 215 (239)
Q Consensus 136 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~~~ 215 (239)
.+.++|||+|||+++++++|+++|++||+|..+.++.++.+|.++|||||+|.+.++|.+|+..++|..+.|+.|+|..+
T Consensus 44 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~a 123 (129)
T 2kxn_B 44 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFS 123 (129)
T ss_dssp CCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 34789999999999999999999999999999999999889999999999999999999999999999999999999877
Q ss_pred CC
Q psy14193 216 NI 217 (239)
Q Consensus 216 ~~ 217 (239)
..
T Consensus 124 ~~ 125 (129)
T 2kxn_B 124 IT 125 (129)
T ss_dssp SS
T ss_pred cC
Confidence 43
No 85
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.72 E-value=1.1e-17 Score=117.95 Aligned_cols=86 Identities=19% Similarity=0.325 Sum_probs=73.3
Q ss_pred cccccccceeEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCC
Q psy14193 16 QNRNLMSKLKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRT 95 (239)
Q Consensus 16 ~n~~~~~~~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~ 95 (239)
.......|..|||+++......+ +|+++|++||+|.+|+ +++|+.++++
T Consensus 12 ~en~~~~gt~lfV~nLp~~~te~--------------~L~~~F~~~G~I~~v~-----------------i~~d~~tg~~ 60 (99)
T 4fxv_A 12 HENLYFQGTNLIVNYLPQNMTQD--------------ELRSLFSSIGEVESAK-----------------LIRDKVAGHS 60 (99)
T ss_dssp ----CCCCSEEEEESCCTTCCHH--------------HHHHHHHTTSCEEEEE-----------------EEECSSSCCE
T ss_pred cccccCCCCEEEEeCCCCCCCHH--------------HHHHHHHhcCCEEEeE-----------------eeecCCCCcc
Confidence 34446688999999887665544 9999999999999998 3567778899
Q ss_pred cceEEEEeCCHHHHHHHHH-hCCCccCCeeEEEeccCC
Q psy14193 96 NMNAYVRFKNLESVEKALE-MNGHVIDEHTIRVDKALT 132 (239)
Q Consensus 96 ~G~afV~f~~~e~a~~Ai~-~~~~~l~g~~i~v~~~~~ 132 (239)
+|||||+|.+.++|++|++ +||..+.|++|.|.++.|
T Consensus 61 kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~AkP 98 (99)
T 4fxv_A 61 LGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARP 98 (99)
T ss_dssp EEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCB
T ss_pred cccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEeeC
Confidence 9999999999999999999 999999999999999976
No 86
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=2.7e-17 Score=117.01 Aligned_cols=80 Identities=24% Similarity=0.404 Sum_probs=75.4
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeCCC
Q psy14193 136 SNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHT 215 (239)
Q Consensus 136 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~~~ 215 (239)
.+.++|||+|||+++++++|+++|++||+|..+.++.++.++.++|||||+|.+.++|.+|+.. +|..+.++.|+|..+
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~a 92 (105)
T 2dh8_A 14 DEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKPC 92 (105)
T ss_dssp SSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEc
Confidence 3478999999999999999999999999999999999988999999999999999999999888 999999999999876
Q ss_pred C
Q psy14193 216 N 216 (239)
Q Consensus 216 ~ 216 (239)
.
T Consensus 93 ~ 93 (105)
T 2dh8_A 93 T 93 (105)
T ss_dssp C
T ss_pred c
Confidence 4
No 87
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=1.7e-17 Score=117.75 Aligned_cols=80 Identities=24% Similarity=0.394 Sum_probs=75.4
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhc-CCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcE-eeEEEEeeC
Q psy14193 136 SNSHSIFIGNIPFEAEEEELRKAFES-CGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEI-DNVRLIRDQ 213 (239)
Q Consensus 136 ~~~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~-~~~r~l~~~ 213 (239)
.+.++|||+|||.++|+++|+++|++ ||.|..+.++.++ +|.++|||||+|.+.++|.+|+..++|.. +.++.|++.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~ 85 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLS 85 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEE
Confidence 34689999999999999999999999 9999999999997 99999999999999999999999999999 999999998
Q ss_pred CCC
Q psy14193 214 HTN 216 (239)
Q Consensus 214 ~~~ 216 (239)
.+.
T Consensus 86 ~a~ 88 (104)
T 2dhg_A 86 VAI 88 (104)
T ss_dssp BCC
T ss_pred Ecc
Confidence 763
No 88
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=2e-17 Score=117.55 Aligned_cols=79 Identities=29% Similarity=0.471 Sum_probs=73.8
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCC-CCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeCC
Q psy14193 136 SNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHT-NIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQH 214 (239)
Q Consensus 136 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~t-g~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~~ 214 (239)
.+.++|||+|||+++++++|+++|+.|| |..+.++.++.+ |.++|||||+|.+.++|.+|+ .++|..+.++.|+|..
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 90 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDV 90 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEE
Confidence 3478999999999999999999999999 999999999877 999999999999999999999 9999999999999976
Q ss_pred CC
Q psy14193 215 TN 216 (239)
Q Consensus 215 ~~ 216 (239)
+.
T Consensus 91 a~ 92 (104)
T 1wi8_A 91 AD 92 (104)
T ss_dssp CC
T ss_pred cc
Confidence 53
No 89
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=7.3e-18 Score=119.32 Aligned_cols=79 Identities=25% Similarity=0.571 Sum_probs=75.0
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeCCC
Q psy14193 137 NSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHT 215 (239)
Q Consensus 137 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~~~ 215 (239)
+.++|||+|||+++++++|+++|++||+|..+.++.++.++.++|||||+|.+.++|.+|+..+||..+.++.|+|..+
T Consensus 11 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 89 (102)
T 1x5s_A 11 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 89 (102)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 4789999999999999999999999999999999999889999999999999999999999999999999999998754
No 90
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=2.5e-17 Score=119.39 Aligned_cols=81 Identities=25% Similarity=0.480 Sum_probs=75.7
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeC
Q psy14193 134 TKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQ 213 (239)
Q Consensus 134 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~ 213 (239)
...+.++|||+|||.++++++|+++|++||+|..++++.++.++.++|||||+|.+.++|.+|+..+++ .+.++.|+|.
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~ 91 (116)
T 2cqd_A 13 KDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVN 91 (116)
T ss_dssp CSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEE
Confidence 344578999999999999999999999999999999999988999999999999999999999999998 8999999997
Q ss_pred CC
Q psy14193 214 HT 215 (239)
Q Consensus 214 ~~ 215 (239)
.+
T Consensus 92 ~a 93 (116)
T 2cqd_A 92 LA 93 (116)
T ss_dssp ES
T ss_pred Ec
Confidence 65
No 91
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=8.6e-18 Score=118.07 Aligned_cols=80 Identities=15% Similarity=0.189 Sum_probs=75.3
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeCCCC
Q psy14193 137 NSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTN 216 (239)
Q Consensus 137 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~~~~ 216 (239)
..++|||+|||+++++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|.+|+..+||..+.++.|+|..+.
T Consensus 14 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 93 (98)
T 2cqp_A 14 GPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLGS 93 (98)
T ss_dssp SSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEcC
Confidence 36899999999999999999999999999988888888899999999999999999999999999999999999998664
No 92
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.71 E-value=2.8e-17 Score=116.88 Aligned_cols=79 Identities=19% Similarity=0.362 Sum_probs=74.1
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeE---EEEeeC
Q psy14193 137 NSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNV---RLIRDQ 213 (239)
Q Consensus 137 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~---r~l~~~ 213 (239)
+.++|||+|||.++++++|+++|++||+|..+.++.++ +|.++|||||+|.+.++|.+|+..+||..+.+ +.|+|.
T Consensus 14 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~ 92 (105)
T 2dnh_A 14 RDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVK 92 (105)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEE
Confidence 47899999999999999999999999999999999996 89999999999999999999999999999988 999987
Q ss_pred CCC
Q psy14193 214 HTN 216 (239)
Q Consensus 214 ~~~ 216 (239)
.+.
T Consensus 93 ~a~ 95 (105)
T 2dnh_A 93 FAD 95 (105)
T ss_dssp ESC
T ss_pred ECc
Confidence 654
No 93
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.71 E-value=2.6e-17 Score=114.21 Aligned_cols=80 Identities=25% Similarity=0.344 Sum_probs=74.0
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeCCC
Q psy14193 136 SNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHT 215 (239)
Q Consensus 136 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~~~ 215 (239)
.+.++|||+|||.++++++|+++|++||+|..+.+..+ +|.++|||||+|.+.++|.+|+..++|..+.++.|+|..+
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 83 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRID 83 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 34789999999999999999999999999999999885 7889999999999999999999999999999999999866
Q ss_pred CC
Q psy14193 216 NI 217 (239)
Q Consensus 216 ~~ 217 (239)
..
T Consensus 84 ~~ 85 (92)
T 2dgv_A 84 RN 85 (92)
T ss_dssp SC
T ss_pred CC
Confidence 43
No 94
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.71 E-value=1.7e-17 Score=120.34 Aligned_cols=79 Identities=25% Similarity=0.473 Sum_probs=74.6
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeCCCC
Q psy14193 137 NSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTN 216 (239)
Q Consensus 137 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~~~~ 216 (239)
+.++|||+|||.++++++|+++|++||.|..+.+..+. +|.++|||||+|.+.++|.+|+..+||..+.|+.|+|..+.
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 84 (116)
T 2fy1_A 6 HPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAK 84 (116)
T ss_dssp SCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence 36799999999999999999999999999999999997 99999999999999999999999999999999999997654
No 95
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=4.5e-18 Score=114.05 Aligned_cols=75 Identities=25% Similarity=0.453 Sum_probs=70.8
Q ss_pred cEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeCC
Q psy14193 139 HSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQH 214 (239)
Q Consensus 139 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~~ 214 (239)
++|||+|||+++++++|+++|++||+|..+.++.++.+|.++|||||+|.+.++|.+|+..++ ..++|+.|+++.
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~ 75 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKV 75 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEe
Confidence 479999999999999999999999999999999998899999999999999999999999999 999999988864
No 96
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.71 E-value=2.6e-17 Score=122.49 Aligned_cols=78 Identities=14% Similarity=0.226 Sum_probs=72.3
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhcCCC---eeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEee
Q psy14193 136 SNSHSIFIGNIPFEAEEEELRKAFESCGE---IDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRD 212 (239)
Q Consensus 136 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~---i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~ 212 (239)
...++|||+|||+++|+++|+++|++||. |.+++++.++. |+++|||||+|.+.++|.+|+. +||..+++|.|+|
T Consensus 42 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V 119 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEV 119 (136)
T ss_dssp CTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEE
Confidence 44789999999999999999999999999 89999999975 9999999999999999999988 9999999999998
Q ss_pred CCC
Q psy14193 213 QHT 215 (239)
Q Consensus 213 ~~~ 215 (239)
..+
T Consensus 120 ~~a 122 (136)
T 2hgl_A 120 FKS 122 (136)
T ss_dssp EEC
T ss_pred EEC
Confidence 654
No 97
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1e-17 Score=118.91 Aligned_cols=79 Identities=32% Similarity=0.575 Sum_probs=75.4
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeCCCC
Q psy14193 138 SHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTN 216 (239)
Q Consensus 138 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~~~~ 216 (239)
.++|||+|||.++++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|.+|+..+||..+.|+.|++..+.
T Consensus 8 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 86 (104)
T 1p1t_A 8 LRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAA 86 (104)
T ss_dssp HSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETT
T ss_pred ccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCC
Confidence 5799999999999999999999999999999999998899999999999999999999999999999999999998664
No 98
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.71 E-value=7.7e-18 Score=114.24 Aligned_cols=72 Identities=17% Similarity=0.248 Sum_probs=67.2
Q ss_pred cEEEEcCCCCCC------cHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEE-EEe
Q psy14193 139 HSIFIGNIPFEA------EEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVR-LIR 211 (239)
Q Consensus 139 ~~l~V~nLp~~~------t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r-~l~ 211 (239)
++|||+|||..+ ++++|+++|++||+|.++.+++ .+|.++|||||+|.+.++|.+|+..+||..+.|+ .|+
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~--~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~ 79 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPE--EDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFR 79 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCC--BTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecC--CCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEE
Confidence 689999999999 7899999999999999999873 5899999999999999999999999999999998 887
Q ss_pred e
Q psy14193 212 D 212 (239)
Q Consensus 212 ~ 212 (239)
|
T Consensus 80 V 80 (81)
T 2krb_A 80 V 80 (81)
T ss_dssp C
T ss_pred e
Confidence 6
No 99
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=3.9e-17 Score=113.14 Aligned_cols=78 Identities=19% Similarity=0.304 Sum_probs=73.2
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeCCC
Q psy14193 136 SNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHT 215 (239)
Q Consensus 136 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~~~ 215 (239)
...++|||+|||+++++++|+++|++| .|..++++++ .+|.++|||||+|.+.++|.+|+. +||..++++.|+|..+
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a 84 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFRE 84 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEE
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEEC
Confidence 347899999999999999999999999 9999999999 789999999999999999999999 9999999999999765
Q ss_pred C
Q psy14193 216 N 216 (239)
Q Consensus 216 ~ 216 (239)
.
T Consensus 85 ~ 85 (91)
T 2dgw_A 85 K 85 (91)
T ss_dssp S
T ss_pred C
Confidence 4
No 100
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=6.8e-17 Score=114.51 Aligned_cols=80 Identities=11% Similarity=0.259 Sum_probs=73.2
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeCC
Q psy14193 135 KSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQH 214 (239)
Q Consensus 135 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~~ 214 (239)
..+.++|||+|||+++++++|+++|++||+|..+.++.+.. .++|||||+|.+.++|.+|+..++|..+.++.|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHT--SNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNW 89 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCC--SSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCC--CCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEE
Confidence 34478999999999999999999999999999999999853 3689999999999999999999999999999999986
Q ss_pred CC
Q psy14193 215 TN 216 (239)
Q Consensus 215 ~~ 216 (239)
+.
T Consensus 90 a~ 91 (103)
T 2cqi_A 90 AT 91 (103)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 101
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=3.6e-17 Score=118.13 Aligned_cols=79 Identities=18% Similarity=0.409 Sum_probs=71.8
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEee--------EE
Q psy14193 137 NSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDN--------VR 208 (239)
Q Consensus 137 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~--------~r 208 (239)
+.++|||+|||+++++++|+++|++||.|..++++.++ ++.++|||||+|.+.++|.+|+..+||..+. ++
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~~ 102 (114)
T 1x5o_A 24 DPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTE 102 (114)
T ss_dssp CTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCCC
Confidence 47899999999999999999999999999999999997 9999999999999999999999999999995 55
Q ss_pred EEeeCCCC
Q psy14193 209 LIRDQHTN 216 (239)
Q Consensus 209 ~l~~~~~~ 216 (239)
.|++.++.
T Consensus 103 ~l~v~~a~ 110 (114)
T 1x5o_A 103 PLLCKFSG 110 (114)
T ss_dssp CBEEEECC
T ss_pred ceeEEccC
Confidence 56665554
No 102
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.71 E-value=3e-17 Score=111.58 Aligned_cols=72 Identities=13% Similarity=0.157 Sum_probs=67.7
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeCCC
Q psy14193 138 SHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHT 215 (239)
Q Consensus 138 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~~~ 215 (239)
+..|||+||++.+|+++|+++|.+||+|.++.+.. ++|||||+|.++++|.+|+..|||..+.++.|+|..+
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence 56899999999999999999999999999999854 6999999999999999999999999999999999755
No 103
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.8e-17 Score=119.68 Aligned_cols=77 Identities=21% Similarity=0.294 Sum_probs=73.5
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeCCC
Q psy14193 138 SHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHT 215 (239)
Q Consensus 138 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~~~ 215 (239)
.++|||+|||.++++++|+++|+.||.|..+.++.++.+|.++|||||+|.+.++|.+|+ .+||..+.|+.|+|..+
T Consensus 25 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 101 (114)
T 2cq4_A 25 ARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQAS 101 (114)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEec
Confidence 689999999999999999999999999999999999888999999999999999999999 99999999999999654
No 104
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=3e-17 Score=116.34 Aligned_cols=78 Identities=26% Similarity=0.451 Sum_probs=73.7
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeCCCC
Q psy14193 137 NSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTN 216 (239)
Q Consensus 137 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~~~~ 216 (239)
+.++|||+|||+++|+++|+++|++||+|..+.++.+ ++.++|||||+|.+.++|.+|+..+||..+.++.|+|..+.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2d9p_A 14 QVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 91 (103)
T ss_dssp SCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEec
Confidence 4789999999999999999999999999999999988 78999999999999999999999999999999999997653
No 105
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=6.8e-17 Score=116.58 Aligned_cols=80 Identities=16% Similarity=0.324 Sum_probs=74.8
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeCCC
Q psy14193 136 SNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHT 215 (239)
Q Consensus 136 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~~~ 215 (239)
.+.++|||+|||.++++++|+++|++||.|..+.++.++ ++.++|||||+|.+.++|.+|+..+||..+.++.|+|..+
T Consensus 13 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 91 (114)
T 2do0_A 13 RLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMD 91 (114)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEc
Confidence 347899999999999999999999999999999999996 6999999999999999999999999999999999999765
Q ss_pred C
Q psy14193 216 N 216 (239)
Q Consensus 216 ~ 216 (239)
.
T Consensus 92 ~ 92 (114)
T 2do0_A 92 E 92 (114)
T ss_dssp S
T ss_pred c
Confidence 3
No 106
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1e-16 Score=113.56 Aligned_cols=80 Identities=29% Similarity=0.500 Sum_probs=73.3
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeCC
Q psy14193 135 KSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQH 214 (239)
Q Consensus 135 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~~ 214 (239)
..+.++|||+|||.++++++|+++|++||+|..+.++.+.. .++|||||+|.+.++|.+|+..++|..++++.|+|..
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 89 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 89 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 34478999999999999999999999999999999998853 3899999999999999999999999999999999976
Q ss_pred CC
Q psy14193 215 TN 216 (239)
Q Consensus 215 ~~ 216 (239)
+.
T Consensus 90 a~ 91 (103)
T 2cq3_A 90 AT 91 (103)
T ss_dssp CC
T ss_pred cc
Confidence 54
No 107
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=4.8e-17 Score=115.24 Aligned_cols=74 Identities=19% Similarity=0.226 Sum_probs=67.9
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhC--CcEeeEEEEeeCC
Q psy14193 137 NSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESC--GEIDNVRLIRDQH 214 (239)
Q Consensus 137 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~--g~~~~~r~l~~~~ 214 (239)
+.++|||+|||+++|+++|+++|++||+|.+++++++ +|||||+|.+.++|..|+..++ |..+.|+.|+|..
T Consensus 15 ~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~ 88 (105)
T 1sjq_A 15 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQF 88 (105)
T ss_dssp CCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEE
Confidence 4689999999999999999999999999999999864 7899999999999999999876 4789999999987
Q ss_pred CC
Q psy14193 215 TN 216 (239)
Q Consensus 215 ~~ 216 (239)
+.
T Consensus 89 A~ 90 (105)
T 1sjq_A 89 SN 90 (105)
T ss_dssp CS
T ss_pred cC
Confidence 64
No 108
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.70 E-value=5e-17 Score=121.42 Aligned_cols=78 Identities=22% Similarity=0.351 Sum_probs=74.9
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeCC
Q psy14193 137 NSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQH 214 (239)
Q Consensus 137 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~~ 214 (239)
+.++|||+|||.++++++|+++|++||+|..++++.++.+|.++|||||+|.+.++|.+|+..+||..+.|+.|+|..
T Consensus 62 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 139 (140)
T 2ku7_A 62 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 139 (140)
T ss_dssp SCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC
T ss_pred CCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 478999999999999999999999999999999999988999999999999999999999999999999999999875
No 109
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.70 E-value=6.4e-18 Score=125.23 Aligned_cols=80 Identities=15% Similarity=0.276 Sum_probs=74.8
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeE--EEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCc----EeeEEE
Q psy14193 136 SNSHSIFIGNIPFEAEEEELRKAFESCGEIDN--VRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGE----IDNVRL 209 (239)
Q Consensus 136 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~--v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~----~~~~r~ 209 (239)
...++|||+|||+++|+++|+++|++||.|.. |++++|+.+|.++|||||+|.+. +|.+|+..+||. .+.|+.
T Consensus 21 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~ 99 (131)
T 2m2b_A 21 NANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKT 99 (131)
T ss_dssp CCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEE
Confidence 34789999999999999999999999999977 99999988999999999999999 899999999999 999999
Q ss_pred EeeCCCC
Q psy14193 210 IRDQHTN 216 (239)
Q Consensus 210 l~~~~~~ 216 (239)
|+|..+.
T Consensus 100 l~V~~a~ 106 (131)
T 2m2b_A 100 INVEFAK 106 (131)
T ss_dssp CCCEECC
T ss_pred EEEEECC
Confidence 9997653
No 110
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.70 E-value=4.2e-17 Score=121.86 Aligned_cols=79 Identities=22% Similarity=0.394 Sum_probs=75.3
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeCCC
Q psy14193 137 NSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHT 215 (239)
Q Consensus 137 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~~~ 215 (239)
..++|||+|||.++++++|+++|+.||+|.++.++.++.+|.++|||||+|.+.++|.+|+..+||..+.++.|+|..+
T Consensus 41 ~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 119 (139)
T 1u6f_A 41 VLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALA 119 (139)
T ss_dssp TTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 3789999999999999999999999999999999999889999999999999999999999999999999999999754
No 111
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.70 E-value=3.5e-17 Score=119.91 Aligned_cols=78 Identities=21% Similarity=0.463 Sum_probs=74.3
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeCCCC
Q psy14193 138 SHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTN 216 (239)
Q Consensus 138 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~~~~ 216 (239)
.++|||+|||.++|+++|+++|++||+|..+.++.++.+|.++|||||+|.+.++|.+|+ .++|..++|+.|+|..+.
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 689999999999999999999999999999999999889999999999999999999999 899999999999998653
No 112
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.3e-16 Score=112.98 Aligned_cols=79 Identities=23% Similarity=0.426 Sum_probs=72.9
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeCCC
Q psy14193 136 SNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHT 215 (239)
Q Consensus 136 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~~~ 215 (239)
.+.++|||+|||.++++++|+++|++||+|..+.++.++.+|.++|||||+|.+.++|.+|+. ++..+.|+.|+|..+
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~~a 90 (103)
T 2cqg_A 13 QKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCKLP 90 (103)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEECC
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEEec
Confidence 347899999999999999999999999999999999998899999999999999999998887 478999999999876
Q ss_pred C
Q psy14193 216 N 216 (239)
Q Consensus 216 ~ 216 (239)
.
T Consensus 91 ~ 91 (103)
T 2cqg_A 91 N 91 (103)
T ss_dssp C
T ss_pred C
Confidence 4
No 113
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=5.7e-17 Score=113.54 Aligned_cols=77 Identities=16% Similarity=0.179 Sum_probs=71.7
Q ss_pred CCcEEEEcCCCCCCcHHHHH----HHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEee
Q psy14193 137 NSHSIFIGNIPFEAEEEELR----KAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRD 212 (239)
Q Consensus 137 ~~~~l~V~nLp~~~t~~~l~----~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~ 212 (239)
+.++|||+|||+++++++|+ ++|++||+|.+++++.++.+ +|||||+|.+.++|.+|+..+||..+.|+.|+|
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V 84 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKILV 84 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 36799999999999999999 99999999999999988654 889999999999999999999999999999999
Q ss_pred CCCC
Q psy14193 213 QHTN 216 (239)
Q Consensus 213 ~~~~ 216 (239)
..+.
T Consensus 85 ~~a~ 88 (96)
T 2dgx_A 85 SLAT 88 (96)
T ss_dssp EECC
T ss_pred EEcC
Confidence 8764
No 114
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.70 E-value=3.1e-17 Score=116.88 Aligned_cols=77 Identities=16% Similarity=0.221 Sum_probs=71.9
Q ss_pred CcEEEEcCCCCCC------cHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEE-EE
Q psy14193 138 SHSIFIGNIPFEA------EEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVR-LI 210 (239)
Q Consensus 138 ~~~l~V~nLp~~~------t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r-~l 210 (239)
.++|||+|||+.+ |+++|+++|++||+|..+.+++ .+|.++|||||+|.+.++|.+|+..+||..+.|+ .|
T Consensus 15 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~--~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l 92 (105)
T 2nlw_A 15 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPE--EDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 92 (105)
T ss_dssp CSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCC--BTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEE
T ss_pred CCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeC--CCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceE
Confidence 7899999999999 7899999999999999999883 5899999999999999999999999999999998 99
Q ss_pred eeCCCC
Q psy14193 211 RDQHTN 216 (239)
Q Consensus 211 ~~~~~~ 216 (239)
+|..+.
T Consensus 93 ~V~~a~ 98 (105)
T 2nlw_A 93 RVNLFT 98 (105)
T ss_dssp EEECSC
T ss_pred EEEEcc
Confidence 998764
No 115
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.70 E-value=2.8e-17 Score=120.80 Aligned_cols=80 Identities=24% Similarity=0.292 Sum_probs=75.5
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeCCC
Q psy14193 136 SNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHT 215 (239)
Q Consensus 136 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~~~ 215 (239)
.+.++|||+|||.++|+++|+++|++||.|..+.++.++.++.++|||||+|.+.++|..|+..+||..+.++.|+|..+
T Consensus 20 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 99 (126)
T 3ex7_B 20 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 99 (126)
T ss_dssp SSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEe
Confidence 34789999999999999999999999999999999999889999999999999999999999999999999999999755
No 116
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.69 E-value=4.6e-18 Score=117.57 Aligned_cols=77 Identities=30% Similarity=0.464 Sum_probs=73.1
Q ss_pred cEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeCCCC
Q psy14193 139 HSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTN 216 (239)
Q Consensus 139 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~~~~ 216 (239)
++|||+|||.++++++|+++|++||+|.++.++.++.+|.++|||||+|.+.+ |.+|+..+||..++|+.|++..+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~ 78 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEAN 78 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC-
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcC
Confidence 58999999999999999999999999999999999889999999999999999 999999999999999999998664
No 117
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.69 E-value=9.8e-17 Score=122.28 Aligned_cols=79 Identities=22% Similarity=0.402 Sum_probs=75.6
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeCCC
Q psy14193 137 NSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHT 215 (239)
Q Consensus 137 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~~~ 215 (239)
+.++|||+|||.++|+++|+++|++||+|..|.++.++.++.++|||||+|.+.++|.+|+..+||..+.++.|+|.++
T Consensus 38 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 116 (156)
T 1h2v_Z 38 KSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWD 116 (156)
T ss_dssp TCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 4789999999999999999999999999999999999989999999999999999999999999999999999999765
No 118
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.69 E-value=5.1e-17 Score=116.52 Aligned_cols=79 Identities=24% Similarity=0.430 Sum_probs=72.0
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeCCCC
Q psy14193 137 NSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTN 216 (239)
Q Consensus 137 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~~~~ 216 (239)
+.++|||+|||.++++++|+++|+.||+|..++++.++.+|.++|||||+|.+.++|.+|+..+ |..++|+.|++..+.
T Consensus 24 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~~a~ 102 (109)
T 2rs2_A 24 SGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPKVAF 102 (109)
T ss_dssp --CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEEEcc
Confidence 4789999999999999999999999999999999999889999999999999999999888875 599999999997653
No 119
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=6.6e-17 Score=117.10 Aligned_cols=78 Identities=26% Similarity=0.475 Sum_probs=74.1
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeCCCC
Q psy14193 138 SHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTN 216 (239)
Q Consensus 138 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~~~~ 216 (239)
.++|||+|||.++++++|+++|++||+|..+.++.++.++.++|||||+|.+.++|.+|+.. +|..+.++.|+|..+.
T Consensus 27 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~ 104 (116)
T 1x4b_A 27 FRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAV 104 (116)
T ss_dssp HTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECC
Confidence 68999999999999999999999999999999999988999999999999999999988887 9999999999998764
No 120
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=2.2e-17 Score=117.07 Aligned_cols=76 Identities=14% Similarity=0.195 Sum_probs=69.7
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeCCC
Q psy14193 137 NSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHT 215 (239)
Q Consensus 137 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~~~ 215 (239)
..++|||+|||+++|+++|+++|++||. ..++++.++ +|+++|||||+|.+.++|.+|+ .+|+..+++|.|+|..+
T Consensus 14 ~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~~ 89 (102)
T 1wez_A 14 TGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGP-DGRVTGEADVEFATHEDAVAAM-AKDKANMQHRYVELFLN 89 (102)
T ss_dssp SSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESS-SSCEEEEEEEECSSSHHHHHHH-TTSSCCSSSSCCEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECC-CCCEeeEEEEEECCHHHHHHHH-HhCCCeECCcEEEEEEC
Confidence 4689999999999999999999999995 599999997 8999999999999999999988 67999999999988644
No 121
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.69 E-value=1.8e-16 Score=131.90 Aligned_cols=75 Identities=23% Similarity=0.281 Sum_probs=68.7
Q ss_pred CCCcEEEEcCCCCCCcHHHHH----HHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEe
Q psy14193 136 SNSHSIFIGNIPFEAEEEELR----KAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIR 211 (239)
Q Consensus 136 ~~~~~l~V~nLp~~~t~~~l~----~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~ 211 (239)
.+.++|||+|||.++|+++|+ ++|++||.|.+|++.+ +|.++|||||+|.+.++|.+|+..+||..+.++.|+
T Consensus 7 ~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 83 (282)
T 3pgw_A 7 RPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR 83 (282)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEE
Confidence 447899999999999999976 8999999999998875 688999999999999999999999999999999888
Q ss_pred eC
Q psy14193 212 DQ 213 (239)
Q Consensus 212 ~~ 213 (239)
+.
T Consensus 84 v~ 85 (282)
T 3pgw_A 84 IQ 85 (282)
T ss_pred EE
Confidence 74
No 122
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=5.3e-17 Score=116.79 Aligned_cols=79 Identities=15% Similarity=0.204 Sum_probs=73.2
Q ss_pred CcEEEEcCCCCCCcHHHHH---HHhhcCCCeeEEEEeecCCCC---CCceEEEEEecChHHHHHHHHHhCCcEeeEEEEe
Q psy14193 138 SHSIFIGNIPFEAEEEELR---KAFESCGEIDNVRLIRDQHTN---IGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIR 211 (239)
Q Consensus 138 ~~~l~V~nLp~~~t~~~l~---~~F~~~G~i~~v~i~~~~~tg---~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~ 211 (239)
.++|||+|||+++++++|+ ++|++||+|..+.++.+..++ .++|||||+|.+.++|.+|+..|||..+.++.|+
T Consensus 15 ~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l~ 94 (111)
T 2cpi_A 15 KNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTLK 94 (111)
T ss_dssp SSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEEEE
Confidence 6799999999999999999 999999999999999887644 5669999999999999999999999999999999
Q ss_pred eCCCC
Q psy14193 212 DQHTN 216 (239)
Q Consensus 212 ~~~~~ 216 (239)
|..+.
T Consensus 95 V~~a~ 99 (111)
T 2cpi_A 95 ASLGT 99 (111)
T ss_dssp EESCC
T ss_pred EEecc
Confidence 98774
No 123
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.8e-16 Score=113.48 Aligned_cols=78 Identities=19% Similarity=0.376 Sum_probs=71.9
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeCCC
Q psy14193 136 SNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHT 215 (239)
Q Consensus 136 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~~~ 215 (239)
.+.++|||+|||.++|+++|+++|++||.|..+.+..+ +.++|||||+|.+.++|.+|+..+||..+.++.|+|..+
T Consensus 20 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 96 (109)
T 1x4a_A 20 NNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFP 96 (109)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEc
Confidence 34789999999999999999999999999999999654 568999999999999999999999999999999999876
Q ss_pred C
Q psy14193 216 N 216 (239)
Q Consensus 216 ~ 216 (239)
.
T Consensus 97 ~ 97 (109)
T 1x4a_A 97 R 97 (109)
T ss_dssp C
T ss_pred c
Confidence 4
No 124
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.69 E-value=1.7e-17 Score=117.17 Aligned_cols=78 Identities=29% Similarity=0.481 Sum_probs=72.2
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecC-CCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeCCC
Q psy14193 137 NSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQ-HTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHT 215 (239)
Q Consensus 137 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~~~ 215 (239)
..++|||+|||.++++++|+++|+.|| |.+++++.++ .+|.++|||||+|.+.++|.+|+ .++|..++|+.|++..+
T Consensus 18 ~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~~a 95 (100)
T 2j76_E 18 PPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVDVA 95 (100)
T ss_dssp --CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCEEC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEEec
Confidence 378999999999999999999999999 9999999997 58999999999999999999999 99999999999999766
Q ss_pred C
Q psy14193 216 N 216 (239)
Q Consensus 216 ~ 216 (239)
.
T Consensus 96 ~ 96 (100)
T 2j76_E 96 D 96 (100)
T ss_dssp C
T ss_pred c
Confidence 4
No 125
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.69 E-value=1.5e-16 Score=115.71 Aligned_cols=78 Identities=14% Similarity=0.238 Sum_probs=71.6
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhcCCC---eeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEee
Q psy14193 136 SNSHSIFIGNIPFEAEEEELRKAFESCGE---IDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRD 212 (239)
Q Consensus 136 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~---i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~ 212 (239)
...++|||+|||+++|+++|+++|+.||. |..++++.++. |+++|||||+|.+.++|.+|+. +||..+++|.|+|
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V 92 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEV 92 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEE
Confidence 34789999999999999999999999998 89999999965 9999999999999999998888 9999999999998
Q ss_pred CCC
Q psy14193 213 QHT 215 (239)
Q Consensus 213 ~~~ 215 (239)
..+
T Consensus 93 ~~a 95 (118)
T 2db1_A 93 FKS 95 (118)
T ss_dssp EEE
T ss_pred EEC
Confidence 543
No 126
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.69 E-value=1.9e-16 Score=121.87 Aligned_cols=93 Identities=23% Similarity=0.414 Sum_probs=79.2
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhcC----C-------CeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEee
Q psy14193 138 SHSIFIGNIPFEAEEEELRKAFESC----G-------EIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDN 206 (239)
Q Consensus 138 ~~~l~V~nLp~~~t~~~l~~~F~~~----G-------~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~ 206 (239)
.++|||+|||+++|+++|+++|++| | .|.++.+. .++|||||+|.++++|.+|+ .++|..+.
T Consensus 4 ~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~------~~~g~afV~f~~~~~A~~A~-~~~~~~~~ 76 (172)
T 2g4b_A 4 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN------QDKNFAFLEFRSVDETTQAM-AFDGIIFQ 76 (172)
T ss_dssp GGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE------TTTTEEEEEESSHHHHHHHG-GGTTCEET
T ss_pred ccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEec------CCCCEEEEEeCCHHHHHHHH-HhCCcEec
Confidence 5799999999999999999999999 6 67766654 35899999999999999998 88888877
Q ss_pred EEEEeeC-----------------------------------------------CCCCCcceEEEEeCChHHHHhhhh
Q psy14193 207 VRLIRDQ-----------------------------------------------HTNIGKGFGYVNFKVSFTTLSSIF 237 (239)
Q Consensus 207 ~r~l~~~-----------------------------------------------~~~~~~G~~fv~f~~~~~a~~a~~ 237 (239)
|+.+++. .++.++|||||+|.+.++|.+|+.
T Consensus 77 g~~i~v~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~ 154 (172)
T 2g4b_A 77 GQSLKIRRPHDYQPLPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIA 154 (172)
T ss_dssp TEECEEECCSSCCCCTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHH
T ss_pred CceeeecCCcccCCCCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH
Confidence 7766543 345568999999999999999985
No 127
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.68 E-value=9.2e-17 Score=117.74 Aligned_cols=79 Identities=15% Similarity=0.265 Sum_probs=74.7
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeCCCC
Q psy14193 137 NSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTN 216 (239)
Q Consensus 137 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~~~~ 216 (239)
..++|||+|||.++++++|+++|+.||+|..+.+..+. +|.++|||||+|.+.++|.+|+..++|..+.|+.|+|..+.
T Consensus 34 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 112 (124)
T 2kt5_A 34 TGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVA 112 (124)
T ss_dssp SCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeC
Confidence 47899999999999999999999999999999999997 99999999999999999999999999999999999997653
No 128
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.68 E-value=1e-17 Score=111.76 Aligned_cols=74 Identities=26% Similarity=0.403 Sum_probs=68.2
Q ss_pred EEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeCC
Q psy14193 140 SIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQH 214 (239)
Q Consensus 140 ~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~~ 214 (239)
+|||+|||+++++++|+++|++||+|..+.++.++.+|.++|||||+|.+.++|.+|+.. +|..+.|+.++++.
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~v~~ 74 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSKCEIKV 74 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTTBCCCEEE
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEE
Confidence 589999999999999999999999999999999988999999999999999988888764 88999999888753
No 129
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.3e-16 Score=114.32 Aligned_cols=78 Identities=27% Similarity=0.489 Sum_probs=72.6
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeCCCC
Q psy14193 137 NSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTN 216 (239)
Q Consensus 137 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~~~~ 216 (239)
..++|||+|||.++++++|+++|++||+|..+.++.+. +.++|||||+|.+.++|.+|+..++|..++|+.|+|..+.
T Consensus 28 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 105 (109)
T 2err_A 28 QPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNAT 105 (109)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 47899999999999999999999999999999999884 4489999999999999999999999999999999998663
No 130
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=5.3e-17 Score=117.33 Aligned_cols=77 Identities=21% Similarity=0.205 Sum_probs=71.5
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCCe-eEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeCCC
Q psy14193 137 NSHSIFIGNIPFEAEEEELRKAFESCGEI-DNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHT 215 (239)
Q Consensus 137 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i-~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~~~ 215 (239)
+.++|||+|||+++|+++|+++|+.||.| ..++++.++ +|.++|||||+|.+.++|.+|+.. ||..++++.|+|..+
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~a 91 (114)
T 2cpy_A 14 AKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHVV 91 (114)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEEE
T ss_pred CccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEEC
Confidence 47899999999999999999999999999 899999997 999999999999999999888776 999999999998644
No 131
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.68 E-value=1.1e-16 Score=112.26 Aligned_cols=75 Identities=15% Similarity=0.057 Sum_probs=67.6
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcE--eeEEEEeeC
Q psy14193 136 SNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEI--DNVRLIRDQ 213 (239)
Q Consensus 136 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~--~~~r~l~~~ 213 (239)
.+.++|||+|||+++|+++|+++|++||.|.++.+++ +||||||+|.+.++|..|+..++|.. +.|+.|+++
T Consensus 19 ~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~------~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~ 92 (100)
T 3r27_A 19 PASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP------KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVN 92 (100)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc------CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEE
Confidence 3578999999999999999999999999999999874 37899999999999999999999875 779999987
Q ss_pred CCC
Q psy14193 214 HTN 216 (239)
Q Consensus 214 ~~~ 216 (239)
.+.
T Consensus 93 ~S~ 95 (100)
T 3r27_A 93 YST 95 (100)
T ss_dssp ECS
T ss_pred ecc
Confidence 663
No 132
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=1.3e-16 Score=114.30 Aligned_cols=75 Identities=20% Similarity=0.371 Sum_probs=70.0
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeCCC
Q psy14193 138 SHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHT 215 (239)
Q Consensus 138 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~~~ 215 (239)
..+|||+|||+++|+++|+++|++| .|..++|+.++ +|+++|||||+|.++++|.+|+ .+||..+++|.|.|..+
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a 90 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDH-VGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPA 90 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCT-TCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECC-CCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEEC
Confidence 5799999999999999999999999 89999999996 4999999999999999999988 79999999999999654
No 133
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=6.1e-17 Score=115.11 Aligned_cols=77 Identities=21% Similarity=0.251 Sum_probs=71.1
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCCeeE-EEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeCCC
Q psy14193 137 NSHSIFIGNIPFEAEEEELRKAFESCGEIDN-VRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHT 215 (239)
Q Consensus 137 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~-v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~~~ 215 (239)
..++|||+|||+++|+++|+++|++||.|.. +.++.+ .+|.++|||||+|.++++|.+|+.. +|..+++|.|+|..+
T Consensus 14 ~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~~ 91 (104)
T 1wg5_A 14 NDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFKS 91 (104)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEEC
Confidence 4789999999999999999999999999987 888888 7999999999999999999998887 999999999988644
No 134
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.67 E-value=9.3e-17 Score=116.42 Aligned_cols=77 Identities=12% Similarity=0.129 Sum_probs=69.1
Q ss_pred cEEEEcCC----CCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecC----hHH----HHHHHH--HhCCcE
Q psy14193 139 HSIFIGNI----PFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKA----EEE----ELRKAF--ESCGEI 204 (239)
Q Consensus 139 ~~l~V~nL----p~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~----~e~----a~~a~~--~~~g~~ 204 (239)
..|||+|| |+.+++++|+++|++||+|.++.++.|+.||.|+|||||+|.+ +++ |.+|+. .++|..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 58999999 9999999999999999999999999999999999999999996 333 677777 789999
Q ss_pred eeEEEEeeCCC
Q psy14193 205 DNVRLIRDQHT 215 (239)
Q Consensus 205 ~~~r~l~~~~~ 215 (239)
++|+.++|...
T Consensus 83 I~Gr~irV~ln 93 (136)
T 2j8a_A 83 IMGFKFEVILN 93 (136)
T ss_dssp ETTEEEEEEEC
T ss_pred ecCcEEEEEEC
Confidence 99999999743
No 135
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=6.2e-17 Score=114.44 Aligned_cols=74 Identities=11% Similarity=0.094 Sum_probs=67.1
Q ss_pred CCcEEEEcCCCC-CCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCC--cEeeEEEEeeC
Q psy14193 137 NSHSIFIGNIPF-EAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCG--EIDNVRLIRDQ 213 (239)
Q Consensus 137 ~~~~l~V~nLp~-~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g--~~~~~r~l~~~ 213 (239)
+.++|||+|||+ ++|+++|+++|++||.|.++.++++ +|||||+|.+.++|..|+..++| ..+.|+.|+|.
T Consensus 14 p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~ 87 (102)
T 1x4d_A 14 TRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVH 87 (102)
T ss_dssp CCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEE
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEE
Confidence 478999999999 9999999999999999999999865 57999999999999999998886 45999999997
Q ss_pred CCC
Q psy14193 214 HTN 216 (239)
Q Consensus 214 ~~~ 216 (239)
.+.
T Consensus 88 ~a~ 90 (102)
T 1x4d_A 88 LSQ 90 (102)
T ss_dssp EEC
T ss_pred ECC
Confidence 664
No 136
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=8.7e-17 Score=115.08 Aligned_cols=80 Identities=16% Similarity=0.211 Sum_probs=73.7
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCC-eeEEEEe-ecCCCCCCceEEEEEecChHHHHHHHHHhC--CcEeeEEEEee
Q psy14193 137 NSHSIFIGNIPFEAEEEELRKAFESCGE-IDNVRLI-RDQHTNIGKGFGYVNFKAEEEELRKAFESC--GEIDNVRLIRD 212 (239)
Q Consensus 137 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~-i~~v~i~-~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~--g~~~~~r~l~~ 212 (239)
+.++|||+|||.++++++|+++|+.||+ |.++.++ .+..+|.++|||||+|.+.++|.+|+..++ +..+.++.|+|
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V 86 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAV 86 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEE
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEE
Confidence 3679999999999999999999999998 9999998 788889999999999999999999999996 58999999999
Q ss_pred CCCC
Q psy14193 213 QHTN 216 (239)
Q Consensus 213 ~~~~ 216 (239)
.++.
T Consensus 87 ~~a~ 90 (109)
T 2dis_A 87 DWAE 90 (109)
T ss_dssp EESC
T ss_pred EEcC
Confidence 7664
No 137
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.67 E-value=2.3e-16 Score=127.66 Aligned_cols=72 Identities=14% Similarity=0.185 Sum_probs=65.9
Q ss_pred CCcEEEEcCCCC-CCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeC
Q psy14193 137 NSHSIFIGNIPF-EAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQ 213 (239)
Q Consensus 137 ~~~~l~V~nLp~-~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~ 213 (239)
+.++|||+|||+ ++++++|+++|++||.|.++++++++ +|||||+|.+.++|.+|+..++|..+.++.|++.
T Consensus 33 ~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~ 105 (229)
T 2adc_A 33 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRIT 105 (229)
T ss_dssp CCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEE
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 478999999999 99999999999999999999999874 7899999999999999999999988888777663
No 138
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.66 E-value=1.3e-16 Score=114.57 Aligned_cols=76 Identities=14% Similarity=0.054 Sum_probs=69.8
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCC-CeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeCCC
Q psy14193 137 NSHSIFIGNIPFEAEEEELRKAFESCG-EIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHT 215 (239)
Q Consensus 137 ~~~~l~V~nLp~~~t~~~l~~~F~~~G-~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~~~ 215 (239)
..++|||+|||+++++++|+++|++|| +|..+.+..+ .++|||||+|.+.++|.+|+..+||..++|+.|+|..+
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~----~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a 102 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR----DFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERD 102 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC----SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEES
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC----CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 468999999999999999999999999 8999988532 47999999999999999999999999999999999876
Q ss_pred C
Q psy14193 216 N 216 (239)
Q Consensus 216 ~ 216 (239)
.
T Consensus 103 ~ 103 (111)
T 2jvr_A 103 D 103 (111)
T ss_dssp C
T ss_pred C
Confidence 4
No 139
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=4.8e-16 Score=109.81 Aligned_cols=75 Identities=19% Similarity=0.197 Sum_probs=67.3
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHh--CCcEeeEEEEeeC
Q psy14193 136 SNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFES--CGEIDNVRLIRDQ 213 (239)
Q Consensus 136 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~--~g~~~~~r~l~~~ 213 (239)
.+.++|||+|||+++++++|+++|++||.|.++.++++ +|||||+|.+.++|..|+..+ ++..+.|+.|+|.
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~ 86 (101)
T 2cq1_A 13 APSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQ 86 (101)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEE
Confidence 34789999999999999999999999999999988754 789999999999999999876 5788999999997
Q ss_pred CCC
Q psy14193 214 HTN 216 (239)
Q Consensus 214 ~~~ 216 (239)
.+.
T Consensus 87 ~a~ 89 (101)
T 2cq1_A 87 YSN 89 (101)
T ss_dssp ECS
T ss_pred EcC
Confidence 663
No 140
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=5.6e-16 Score=110.81 Aligned_cols=75 Identities=16% Similarity=0.261 Sum_probs=69.1
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeE-----EE
Q psy14193 135 KSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNV-----RL 209 (239)
Q Consensus 135 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~-----r~ 209 (239)
....++|||+|||+++++++|+++|++||+|..+.++.+ |||||+|.+.++|.+|+..+||..+.+ +.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~ 84 (108)
T 1x4c_A 12 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAY 84 (108)
T ss_dssp CSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceE
Confidence 345789999999999999999999999999999999865 799999999999999999999999999 99
Q ss_pred EeeCCCC
Q psy14193 210 IRDQHTN 216 (239)
Q Consensus 210 l~~~~~~ 216 (239)
|+|..+.
T Consensus 85 i~V~~a~ 91 (108)
T 1x4c_A 85 IRVKVDG 91 (108)
T ss_dssp EEEEESS
T ss_pred EEEEeCC
Confidence 9997653
No 141
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.66 E-value=3.1e-16 Score=123.41 Aligned_cols=70 Identities=24% Similarity=0.470 Sum_probs=60.1
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhcC----C-------CeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEee
Q psy14193 138 SHSIFIGNIPFEAEEEELRKAFESC----G-------EIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDN 206 (239)
Q Consensus 138 ~~~l~V~nLp~~~t~~~l~~~F~~~----G-------~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~ 206 (239)
.++|||+|||+++|+++|+++|+.| | .|.++.+ +.++|||||+|.+.++|.+|+ .++|..+.
T Consensus 4 ~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~F~~~~~A~~Al-~l~g~~~~ 76 (198)
T 2yh0_A 4 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAM-AFDGIIFQ 76 (198)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE------ETTTTEEEEEESCSHHHHHHG-GGTTEEET
T ss_pred eeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe------cCCCCEEEEEeCCHHHHHHHH-HhcCCEEc
Confidence 5799999999999999999999999 4 5555544 456899999999999999999 89999888
Q ss_pred EEEEeeCC
Q psy14193 207 VRLIRDQH 214 (239)
Q Consensus 207 ~r~l~~~~ 214 (239)
|+.|++..
T Consensus 77 g~~i~v~~ 84 (198)
T 2yh0_A 77 GQSLKIRR 84 (198)
T ss_dssp TEEEEEEC
T ss_pred CceEEEeC
Confidence 88877653
No 142
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=3.4e-16 Score=110.46 Aligned_cols=77 Identities=21% Similarity=0.356 Sum_probs=70.3
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeCCC
Q psy14193 136 SNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHT 215 (239)
Q Consensus 136 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~~~ 215 (239)
.+.++|||+|||.++++++|+++|++||.| +++.+ .++.++|||||+|.+.++|.+|+..+||..+.++.|+|..+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 88 (101)
T 2fc9_A 13 GESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQ 88 (101)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEc
Confidence 347899999999999999999999999987 56666 68999999999999999999999999999999999999866
Q ss_pred C
Q psy14193 216 N 216 (239)
Q Consensus 216 ~ 216 (239)
.
T Consensus 89 ~ 89 (101)
T 2fc9_A 89 G 89 (101)
T ss_dssp S
T ss_pred C
Confidence 3
No 143
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.65 E-value=2.3e-17 Score=123.17 Aligned_cols=116 Identities=13% Similarity=0.131 Sum_probs=70.8
Q ss_pred ceEEEEeCCHHHHHHHHH-hCCCccCCeeEEEec---cCCCCCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEee
Q psy14193 97 MNAYVRFKNLESVEKALE-MNGHVIDEHTIRVDK---ALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIR 172 (239)
Q Consensus 97 G~afV~f~~~e~a~~Ai~-~~~~~l~g~~i~v~~---~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~ 172 (239)
|++|.+|.-++.+..++. +... ..+....-.. ..+......++|||+|||+++|+++|+++|++|| |..|+++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~-~gg~~~g~~~g~~~~~~~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~ 79 (139)
T 2hgn_A 2 GSSHHHHHHSSGLVPRGSHMASM-TGGQQMGRGSGDSEFTVQSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEI 79 (139)
T ss_dssp --------------------------------------------CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCC
T ss_pred CcccccccCccccchhcccchhc-cCCCCCCCCCCCcccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEE
Confidence 467777766666555554 2221 2222221111 1112223478999999999999999999999999 77999999
Q ss_pred cCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeCCCC
Q psy14193 173 DQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTN 216 (239)
Q Consensus 173 ~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~~~~ 216 (239)
++. |+++|||||+|.+.++|.+|+ .+|+..+++|.|.|..+.
T Consensus 80 d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a~ 121 (139)
T 2hgn_A 80 GPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLNS 121 (139)
T ss_dssp SSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEECC
T ss_pred CCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEECC
Confidence 964 999999999999999999998 899999999999986554
No 144
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.65 E-value=1.5e-16 Score=125.53 Aligned_cols=71 Identities=14% Similarity=0.186 Sum_probs=65.1
Q ss_pred CcEEEEcCCCC-CCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeC
Q psy14193 138 SHSIFIGNIPF-EAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQ 213 (239)
Q Consensus 138 ~~~l~V~nLp~-~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~ 213 (239)
.++|||+|||+ ++++++|+++|++||.|.+++++.++ +|||||+|.+.++|.+|+..++|..+.|+.|++.
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~ 74 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRIT 74 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEE
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEE
Confidence 47999999999 99999999999999999999998773 7899999999999999999999998888877773
No 145
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=4.7e-16 Score=106.14 Aligned_cols=76 Identities=18% Similarity=0.306 Sum_probs=69.1
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHh-CCcEeeEEEEee
Q psy14193 134 TKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFES-CGEIDNVRLIRD 212 (239)
Q Consensus 134 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~-~g~~~~~r~l~~ 212 (239)
...+.++|||+|||.++++++|+++|++||+|..+.++++ +|||||+|.+.++|.+|+..+ +|..+.|+.|++
T Consensus 8 ~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v 81 (85)
T 2ytc_A 8 EDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNV 81 (85)
T ss_dssp SCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCE
T ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEE
Confidence 3345789999999999999999999999999999999864 789999999999999999998 999999999998
Q ss_pred CCC
Q psy14193 213 QHT 215 (239)
Q Consensus 213 ~~~ 215 (239)
.++
T Consensus 82 ~~a 84 (85)
T 2ytc_A 82 KWG 84 (85)
T ss_dssp EEC
T ss_pred Eec
Confidence 754
No 146
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.65 E-value=1.3e-16 Score=129.12 Aligned_cols=78 Identities=18% Similarity=0.232 Sum_probs=74.0
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhcCC--CeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeCCC
Q psy14193 138 SHSIFIGNIPFEAEEEELRKAFESCG--EIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHT 215 (239)
Q Consensus 138 ~~~l~V~nLp~~~t~~~l~~~F~~~G--~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~~~ 215 (239)
.++|||+|||+++|+++|+++|+.|| .|.+|+|+.|+.+|.++|||||+|.+.++|.+|+..+||..+.++.|+|..+
T Consensus 68 ~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~a 147 (229)
T 3q2s_C 68 RIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPV 147 (229)
T ss_dssp -CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEEC
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEEC
Confidence 57899999999999999999999999 9999999999999999999999999999999999999999999999999754
No 147
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.65 E-value=6.7e-17 Score=115.49 Aligned_cols=78 Identities=10% Similarity=0.208 Sum_probs=71.4
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhcCCC---eeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEee
Q psy14193 136 SNSHSIFIGNIPFEAEEEELRKAFESCGE---IDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRD 212 (239)
Q Consensus 136 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~---i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~ 212 (239)
...++|||+|||+++|+++|+++|+.||. |..++++.++. |.++|||||+|.+.++|.+|+. ++|..++++.|+|
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V 86 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVEV 86 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEEE
Confidence 34789999999999999999999999988 89999999976 9999999999999999998888 9999999999988
Q ss_pred CCC
Q psy14193 213 QHT 215 (239)
Q Consensus 213 ~~~ 215 (239)
..+
T Consensus 87 ~~a 89 (107)
T 2lmi_A 87 YEI 89 (107)
T ss_dssp EEC
T ss_pred EEC
Confidence 644
No 148
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.65 E-value=3.8e-16 Score=111.99 Aligned_cols=88 Identities=15% Similarity=0.346 Sum_probs=75.3
Q ss_pred CCeeEEEeccCCCCCC----CCcEEEEcCCCCC-CcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHH
Q psy14193 121 DEHTIRVDKALTTTKS----NSHSIFIGNIPFE-AEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELR 195 (239)
Q Consensus 121 ~g~~i~v~~~~~~~~~----~~~~l~V~nLp~~-~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~ 195 (239)
.|..+.+..+.+.... ..++|||+|||++ +++++|+++|++||+|..+.+ ++|||||+|.+.++|.+
T Consensus 6 ~g~~~~~~~s~~~~~~~~~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~ 77 (110)
T 1wf1_A 6 SGMSLKLQASNVTNKNDPKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARA 77 (110)
T ss_dssp CSCCCCCCCCCSCCSCCCTTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHH
T ss_pred CCcccccccCCCCCCCCCCCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHH
Confidence 4566666655433322 2589999999999 999999999999999999988 47899999999999999
Q ss_pred HHHHhCCcEeeEEEEeeCCCC
Q psy14193 196 KAFESCGEIDNVRLIRDQHTN 216 (239)
Q Consensus 196 a~~~~~g~~~~~r~l~~~~~~ 216 (239)
|+..++|..+.++.|+|..+.
T Consensus 78 A~~~l~g~~~~g~~l~V~~a~ 98 (110)
T 1wf1_A 78 AVLGENGRVLAGQTLDINMAG 98 (110)
T ss_dssp HHHHHTTCEETTEECCEEESC
T ss_pred HHHHcCCCEECCeEEEEEECC
Confidence 999999999999999998764
No 149
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.65 E-value=2e-16 Score=116.33 Aligned_cols=78 Identities=19% Similarity=0.150 Sum_probs=70.2
Q ss_pred CCCcEEEEcCCCCCCcHHHHH----HHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEe
Q psy14193 136 SNSHSIFIGNIPFEAEEEELR----KAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIR 211 (239)
Q Consensus 136 ~~~~~l~V~nLp~~~t~~~l~----~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~ 211 (239)
.+.++|||+|||+.+++++|+ ++|++||+|.+|.+.. ++.++|||||+|.+.++|..|+..+||..+.|+.|+
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~ 103 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLV 103 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEE
Confidence 347899999999999998876 7999999999988753 678999999999999999999999999999999999
Q ss_pred eCCCC
Q psy14193 212 DQHTN 216 (239)
Q Consensus 212 ~~~~~ 216 (239)
|.++.
T Consensus 104 V~~a~ 108 (127)
T 2a3j_A 104 ITFSE 108 (127)
T ss_dssp EEECC
T ss_pred EEEcc
Confidence 98764
No 150
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.65 E-value=1.5e-16 Score=112.46 Aligned_cols=74 Identities=23% Similarity=0.463 Sum_probs=67.1
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeC
Q psy14193 137 NSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQ 213 (239)
Q Consensus 137 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~ 213 (239)
..++|||+|||.++++++|+++|++||.|..+.++.++ +|.++|||||+|.+.++|.+|+. +|..++|+.|.+.
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~ 81 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLG 81 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEE
Confidence 36899999999999999999999999999999999997 99999999999999998988887 7777777777754
No 151
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=4.9e-17 Score=119.26 Aligned_cols=78 Identities=18% Similarity=0.314 Sum_probs=70.9
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeCCC
Q psy14193 137 NSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHT 215 (239)
Q Consensus 137 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~~~ 215 (239)
..++|||+|||+++|+++|+++|+.||.|..+.++.+..+|.++|||||+|.+.++|.+|+. +||..++++.|.|..+
T Consensus 24 ~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a 101 (124)
T 1wel_A 24 AGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPI 101 (124)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEEC
Confidence 36899999999999999999999999999886666666799999999999999999999988 9999999999998644
No 152
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.65 E-value=4.2e-16 Score=111.90 Aligned_cols=81 Identities=15% Similarity=0.173 Sum_probs=71.2
Q ss_pred cceeEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEE
Q psy14193 22 SKLKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYV 101 (239)
Q Consensus 22 ~~~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV 101 (239)
..++|||+++......+ +|+++|++||+|.+|+ +++|+.|++++|||||
T Consensus 5 p~~~lfV~nL~~~~te~--------------~L~~~F~~~G~i~~v~-----------------i~~d~~tg~~rG~aFV 53 (110)
T 3s8s_A 5 PLKEVTFARLNDNVRET--------------FLKDMCRKYGEVEEVE-----------------ILLHPRTRKHLGLARV 53 (110)
T ss_dssp CCCEEEEESCCTTCCHH--------------HHHHHHTTTSCEEEEE-----------------EEECTTTCCEEEEEEE
T ss_pred CCcEEEEECCCCCCCHH--------------HHHHHHHhcCCeeEEE-----------------EEECCCCCceeeEEEE
Confidence 46789999876654444 9999999999999988 4667788999999999
Q ss_pred EeCCHHHHHHHHH-hCCCccCCeeEEEeccCCC
Q psy14193 102 RFKNLESVEKALE-MNGHVIDEHTIRVDKALTT 133 (239)
Q Consensus 102 ~f~~~e~a~~Ai~-~~~~~l~g~~i~v~~~~~~ 133 (239)
+|.+.++|++|++ +|+..+.|+.|.|.++...
T Consensus 54 ~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a~~~ 86 (110)
T 3s8s_A 54 LFTSTRGAKETVKNLHLTSVMGNIIHAQLDIKG 86 (110)
T ss_dssp EESSHHHHHHHHHHHTTCEETTEECEEEECSTT
T ss_pred EECCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 9999999999999 9999999999999998654
No 153
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.64 E-value=1.1e-16 Score=112.00 Aligned_cols=82 Identities=24% Similarity=0.362 Sum_probs=71.8
Q ss_pred cCCCCCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEE
Q psy14193 130 ALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRL 209 (239)
Q Consensus 130 ~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~ 209 (239)
.......+.++|||+|||.++++++|+++|++||.|..+ ..++.++|||||+|.+.++|.+|+..++|..+.|+.
T Consensus 8 ~~~~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 82 (96)
T 1fjc_A 8 CTSKKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRS 82 (96)
T ss_dssp TTTSTTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEE
T ss_pred cccccCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 333444458899999999999999999999999988766 247889999999999999999999999999999999
Q ss_pred EeeCCCC
Q psy14193 210 IRDQHTN 216 (239)
Q Consensus 210 l~~~~~~ 216 (239)
|++..+.
T Consensus 83 l~v~~a~ 89 (96)
T 1fjc_A 83 VSLYYTG 89 (96)
T ss_dssp EEEEECS
T ss_pred EEEEEcC
Confidence 9998763
No 154
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.64 E-value=4.2e-16 Score=112.61 Aligned_cols=77 Identities=19% Similarity=0.260 Sum_probs=70.9
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeCCCC
Q psy14193 137 NSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTN 216 (239)
Q Consensus 137 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~~~~ 216 (239)
+.++|||+|||.++++++|+++|++||.|..+.++.+ +.++|||||+|.+.++|.+|+..+||..+.|+.|++..+.
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 83 (115)
T 3lqv_A 7 VNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYN 83 (115)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEec
Confidence 4679999999999999999999999999999999865 4569999999999999999999999999999999997664
No 155
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.64 E-value=9.7e-16 Score=108.10 Aligned_cols=73 Identities=22% Similarity=0.271 Sum_probs=68.4
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeCCCC
Q psy14193 138 SHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTN 216 (239)
Q Consensus 138 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~~~~ 216 (239)
.++|||+|||.++++++|+++|+.||.|.++++. .++|||||+|.+.++|.+|+..+||..++|+.|+|.++.
T Consensus 27 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 99 (101)
T 2la4_A 27 VTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY------PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGK 99 (101)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCC
T ss_pred CCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe------cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEecc
Confidence 6799999999999999999999999999999987 358999999999999999999999999999999998763
No 156
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.64 E-value=2.8e-17 Score=116.12 Aligned_cols=78 Identities=22% Similarity=0.275 Sum_probs=71.7
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeCCCC
Q psy14193 137 NSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTN 216 (239)
Q Consensus 137 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~~~~ 216 (239)
+.++|||+|||.++|+++|+++|++||.|.. .++.+..+|.++|||||+|.+.++|.+|+. +||..+.++.|+|..+.
T Consensus 16 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a~ 93 (101)
T 1fj7_A 16 TPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPK 93 (101)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEcC
Confidence 4789999999999999999999999999887 666776789999999999999999999998 99999999999998764
No 157
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=4.5e-16 Score=112.88 Aligned_cols=74 Identities=19% Similarity=0.226 Sum_probs=67.1
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhC--CcEeeEEEEeeCC
Q psy14193 137 NSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESC--GEIDNVRLIRDQH 214 (239)
Q Consensus 137 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~--g~~~~~r~l~~~~ 214 (239)
+.++|||+|||+++|+++|+++|++||.|.++.++++ +|||||+|.+.++|..|+..++ +..+.|+.|+|..
T Consensus 30 ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~ 103 (119)
T 2ad9_A 30 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQF 103 (119)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEE
Confidence 4789999999999999999999999999999999865 7899999999999999999887 4689999999976
Q ss_pred CC
Q psy14193 215 TN 216 (239)
Q Consensus 215 ~~ 216 (239)
+.
T Consensus 104 a~ 105 (119)
T 2ad9_A 104 SN 105 (119)
T ss_dssp CS
T ss_pred cc
Confidence 53
No 158
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=1.4e-15 Score=107.47 Aligned_cols=78 Identities=22% Similarity=0.393 Sum_probs=71.2
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeCCC
Q psy14193 136 SNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHT 215 (239)
Q Consensus 136 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~~~ 215 (239)
.+.++|||+|||.++++++|+++|+.|+ .+.++.+..++.++|||||+|.+.++|.+|+..+||..+.++.|+|..+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2fc8_A 13 QPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWA 89 (102)
T ss_dssp CCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEe
Confidence 3478999999999999999999999874 6778888889999999999999999999999999999999999999866
Q ss_pred C
Q psy14193 216 N 216 (239)
Q Consensus 216 ~ 216 (239)
.
T Consensus 90 ~ 90 (102)
T 2fc8_A 90 K 90 (102)
T ss_dssp C
T ss_pred c
Confidence 4
No 159
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.63 E-value=3e-16 Score=109.81 Aligned_cols=77 Identities=22% Similarity=0.269 Sum_probs=71.1
Q ss_pred CCcEEEEcCCCCCCcHHHHH----HHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEee
Q psy14193 137 NSHSIFIGNIPFEAEEEELR----KAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRD 212 (239)
Q Consensus 137 ~~~~l~V~nLp~~~t~~~l~----~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~ 212 (239)
+.++|||+|||.++++++|+ ++|++||.|..+.+.. +|.++|||||+|.+.++|.+|+..+||..+.|+.|++
T Consensus 7 ~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 83 (97)
T 1nu4_A 7 PNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRI 83 (97)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEE
Confidence 46899999999999999999 9999999999998873 5778899999999999999999999999999999999
Q ss_pred CCCC
Q psy14193 213 QHTN 216 (239)
Q Consensus 213 ~~~~ 216 (239)
..+.
T Consensus 84 ~~a~ 87 (97)
T 1nu4_A 84 QYAK 87 (97)
T ss_dssp EECS
T ss_pred EEcc
Confidence 8764
No 160
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=1.1e-15 Score=105.50 Aligned_cols=72 Identities=25% Similarity=0.370 Sum_probs=67.5
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeCCCC
Q psy14193 137 NSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTN 216 (239)
Q Consensus 137 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~~~~ 216 (239)
+.++|||+|||.++++++|+++|++||+|..+.++ +|||||+|.+.++|.+|+..+||..+.++.|+|..+.
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 78 (90)
T 2dnq_A 7 GMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASK 78 (90)
T ss_dssp CCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSS
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECC
Confidence 46899999999999999999999999999999986 5799999999999999999999999999999998764
No 161
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=2.9e-16 Score=114.84 Aligned_cols=75 Identities=19% Similarity=0.206 Sum_probs=68.5
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhcCCCe----eEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeC
Q psy14193 138 SHSIFIGNIPFEAEEEELRKAFESCGEI----DNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQ 213 (239)
Q Consensus 138 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i----~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~ 213 (239)
..+|||+|||+++|+++|+++|++||.| ..|.++.+ .+|+++|||||+|.+.++|.+|+.. |+..+++|.|.|.
T Consensus 23 ~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d-~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V~ 100 (123)
T 2dha_A 23 QVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTY-PDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIELF 100 (123)
T ss_dssp CCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEEC-TTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECCE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEEC-CCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEE
Confidence 5799999999999999999999999975 68999999 5899999999999999999988876 9999999998885
Q ss_pred C
Q psy14193 214 H 214 (239)
Q Consensus 214 ~ 214 (239)
.
T Consensus 101 ~ 101 (123)
T 2dha_A 101 R 101 (123)
T ss_dssp E
T ss_pred E
Confidence 3
No 162
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.63 E-value=2.8e-15 Score=118.20 Aligned_cols=109 Identities=16% Similarity=0.205 Sum_probs=86.2
Q ss_pred CHHHHHHHHH-h--CCCccCCeeEEEeccC--CCCCC--------CCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEe
Q psy14193 105 NLESVEKALE-M--NGHVIDEHTIRVDKAL--TTTKS--------NSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLI 171 (239)
Q Consensus 105 ~~e~a~~Ai~-~--~~~~l~g~~i~v~~~~--~~~~~--------~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~ 171 (239)
+.+.+..|+. . ....+.+....|.+.. +.+.. ..++|||+|||+++|+++|+++|++||+|..++++
T Consensus 63 d~~~I~~Al~~S~~~~lev~ed~~~vrR~~~~p~p~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~ 142 (193)
T 2voo_A 63 DFNVIVEALSKSKAELMEISEDKTKIRRSPSKPLPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMR 142 (193)
T ss_dssp CHHHHHHHHHTCSSCCEEECTTSSEEEECTTSCCCCCCHHHHHHHHHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEE
T ss_pred CHHHHHHHHhhcccceEEEecccceEEecccCCCcccchhhhhccccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEE
Confidence 5677888887 5 4445555444554442 22221 25899999999999999999999999999999999
Q ss_pred ecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeCCC
Q psy14193 172 RDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHT 215 (239)
Q Consensus 172 ~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~~~ 215 (239)
++. +|.++|||||+|.+.++|.+|+..++ ..++|+.|+|.+.
T Consensus 143 ~~~-~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~Gr~l~V~~~ 184 (193)
T 2voo_A 143 RTL-HKAFKGSIFVVFDSIESAKKFVETPG-QKYKETDLLILFK 184 (193)
T ss_dssp ECT-TCCEEEEEEEEESSHHHHHHHHHCTT-CEETTEECEEEET
T ss_pred ECC-CCCcccEEEEEECCHHHHHHHHHhCC-CeECCEEEEEEEh
Confidence 985 68999999999999998888886554 5899999999754
No 163
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.63 E-value=1.4e-15 Score=108.86 Aligned_cols=73 Identities=21% Similarity=0.462 Sum_probs=68.6
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeCCCC
Q psy14193 137 NSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTN 216 (239)
Q Consensus 137 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~~~~ 216 (239)
+.++|||+|||.++++++|+++|++||.|..+.+. +|||||+|.+.++|.+|+..+||..++|+.|+|..+.
T Consensus 30 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 101 (108)
T 2jvo_A 30 SNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSK 101 (108)
T ss_dssp SCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCS
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEec
Confidence 47899999999999999999999999999999987 6899999999999999999999999999999998774
Q ss_pred C
Q psy14193 217 I 217 (239)
Q Consensus 217 ~ 217 (239)
.
T Consensus 102 ~ 102 (108)
T 2jvo_A 102 L 102 (108)
T ss_dssp C
T ss_pred C
Confidence 3
No 164
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.43 E-value=2.2e-17 Score=119.69 Aligned_cols=80 Identities=19% Similarity=0.175 Sum_probs=75.2
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCCeeE--------EEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEE
Q psy14193 137 NSHSIFIGNIPFEAEEEELRKAFESCGEIDN--------VRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVR 208 (239)
Q Consensus 137 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r 208 (239)
+.++|||+|||.++++++|+++|++||.|.. +.++.++.++.++|||||+|.+.++|.+|+..+||..+.++
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 85 (116)
T 2lcw_A 6 DNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGN 85 (116)
Confidence 4679999999999999999999999999998 89999988899999999999999999999999999999999
Q ss_pred EEeeCCCC
Q psy14193 209 LIRDQHTN 216 (239)
Q Consensus 209 ~l~~~~~~ 216 (239)
.|+|..+.
T Consensus 86 ~l~V~~a~ 93 (116)
T 2lcw_A 86 PIKVSFAT 93 (116)
Confidence 99998653
No 165
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.3e-15 Score=109.01 Aligned_cols=74 Identities=18% Similarity=0.405 Sum_probs=69.5
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeCCCC
Q psy14193 137 NSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTN 216 (239)
Q Consensus 137 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~~~~ 216 (239)
..++|||+|||.++++++|+++|++||.|..+.++.+ +|||||+|.+.++|.+|+..++|..+.|+.|+|.++.
T Consensus 24 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 97 (109)
T 1x4g_A 24 KNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGK 97 (109)
T ss_dssp SCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecC
Confidence 3689999999999999999999999999999999865 7899999999999999999999999999999998764
No 166
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=7.2e-16 Score=108.02 Aligned_cols=74 Identities=14% Similarity=0.312 Sum_probs=68.5
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEee--EEEEeeCC
Q psy14193 137 NSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDN--VRLIRDQH 214 (239)
Q Consensus 137 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~--~r~l~~~~ 214 (239)
+.++|||+|||.++++++|+++|++||+|..+.+..+ +|||||+|.+.++|.+|+..+||..+. ++.|+|.+
T Consensus 16 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~ 89 (97)
T 1why_A 16 PTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDF 89 (97)
T ss_dssp CCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEE
Confidence 3689999999999999999999999999999988753 789999999999999999999999999 99999987
Q ss_pred CC
Q psy14193 215 TN 216 (239)
Q Consensus 215 ~~ 216 (239)
+.
T Consensus 90 a~ 91 (97)
T 1why_A 90 AK 91 (97)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 167
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=5.8e-16 Score=109.96 Aligned_cols=75 Identities=16% Similarity=0.045 Sum_probs=66.0
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCc--EeeEEEEeeC
Q psy14193 136 SNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGE--IDNVRLIRDQ 213 (239)
Q Consensus 136 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~--~~~~r~l~~~ 213 (239)
.+.++|||+|||+++++++|+++|++||.|..+.++++ +|||||+|.+.++|.+|+..++|. .+.|+.|++.
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~ 86 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFN 86 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 34789999999999999999999999999999988753 789999999999999999987654 5889999887
Q ss_pred CCC
Q psy14193 214 HTN 216 (239)
Q Consensus 214 ~~~ 216 (239)
.+.
T Consensus 87 ~a~ 89 (104)
T 1wex_A 87 YST 89 (104)
T ss_dssp ECS
T ss_pred Ecc
Confidence 653
No 168
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.3e-16 Score=115.29 Aligned_cols=80 Identities=13% Similarity=0.134 Sum_probs=69.0
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeCCCC
Q psy14193 137 NSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTN 216 (239)
Q Consensus 137 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~~~~ 216 (239)
+.++|||+|||.++|+++|+++|++||.|..+.+..+..+|.++|||||+|.+.++|.+|+..++|..+.++.|+|..+.
T Consensus 24 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~ 103 (115)
T 2cpx_A 24 PNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFGK 103 (115)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEcc
Confidence 47899999999999999999999999998433222222378899999999999999999999999999999999998664
No 169
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.62 E-value=2.4e-15 Score=105.50 Aligned_cols=72 Identities=19% Similarity=0.414 Sum_probs=67.2
Q ss_pred CCcEEEEcCCCC-CCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeCCC
Q psy14193 137 NSHSIFIGNIPF-EAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHT 215 (239)
Q Consensus 137 ~~~~l~V~nLp~-~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~~~ 215 (239)
+.++|||+|||. ++++++|+++|++||.|..+.+. +|||||+|.+.++|.+|+..+||..+.|+.|++..+
T Consensus 21 ~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 92 (97)
T 2xnq_A 21 MKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVS 92 (97)
T ss_dssp TTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEec
Confidence 478999999998 99999999999999999999883 789999999999999999999999999999999876
Q ss_pred C
Q psy14193 216 N 216 (239)
Q Consensus 216 ~ 216 (239)
.
T Consensus 93 ~ 93 (97)
T 2xnq_A 93 S 93 (97)
T ss_dssp C
T ss_pred C
Confidence 3
No 170
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=8.2e-16 Score=108.13 Aligned_cols=74 Identities=27% Similarity=0.446 Sum_probs=68.6
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeCCCC
Q psy14193 137 NSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTN 216 (239)
Q Consensus 137 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~~~~ 216 (239)
+.++|||+|||.++++++|+++|++||+|..+.+.++ +|||||+|.+.++|.+|+..++|..+.++.|+|..+.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 87 (99)
T 2cpj_A 14 QRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFAC 87 (99)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcC
Confidence 4789999999999999999999999999999998754 7899999999999999999999999999999997664
No 171
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=2.8e-15 Score=103.96 Aligned_cols=74 Identities=18% Similarity=0.301 Sum_probs=67.9
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeCC
Q psy14193 135 KSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQH 214 (239)
Q Consensus 135 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~~ 214 (239)
..+.++|||+|||.++++++|+++|++||.|..+.+++ +||||+|.+.++|.+|+..+||..+.++.|+|..
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 78 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK--------DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQL 78 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS--------SEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 34578999999999999999999999999999999873 3999999999999999999999999999999986
Q ss_pred CC
Q psy14193 215 TN 216 (239)
Q Consensus 215 ~~ 216 (239)
+.
T Consensus 79 a~ 80 (92)
T 2dgt_A 79 ST 80 (92)
T ss_dssp SS
T ss_pred cc
Confidence 63
No 172
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.61 E-value=7.5e-16 Score=108.64 Aligned_cols=86 Identities=14% Similarity=0.141 Sum_probs=69.5
Q ss_pred ceeEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEEE
Q psy14193 23 KLKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVR 102 (239)
Q Consensus 23 ~~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV~ 102 (239)
++.|||+++..-. +.......++|+++|++||+|.+|+ ++++..|++++|||||+
T Consensus 6 ~~~vfV~nLp~v~--------~~~~~~~~~~L~~~F~~~G~i~~v~-----------------i~~d~~tg~~kG~afV~ 60 (100)
T 3ns6_A 6 DQYIVVNGAPVIP--------SAKVPVLKKALTSLFSKAGKVVNME-----------------FPIDEATGKTKGFLFVE 60 (100)
T ss_dssp GGEEEEESCCCCB--------GGGHHHHHHHHHHHHHTTSCEEEEE-----------------CCEETTTTEECSEEEEE
T ss_pred CcEEEEeCCCcCC--------hHHHHHHHHHHHHHHHhcCCEeEEE-----------------EEEcCCCCccceEEEEE
Confidence 5678998775510 0011222369999999999999988 45677788999999999
Q ss_pred eCCHHHHHHHHH-hCCCccCC-eeEEEeccCCC
Q psy14193 103 FKNLESVEKALE-MNGHVIDE-HTIRVDKALTT 133 (239)
Q Consensus 103 f~~~e~a~~Ai~-~~~~~l~g-~~i~v~~~~~~ 133 (239)
|.+.++|++|++ +|+..+.| +.|.|.++.+.
T Consensus 61 f~~~~~A~~Ai~~lng~~~~g~r~l~V~~a~~~ 93 (100)
T 3ns6_A 61 CGSMNDAKKIIKSFHGKRLDLKHRLFLYTMKDV 93 (100)
T ss_dssp ESSHHHHHHHHHHHTTCBSSSSCBCEEEESHHH
T ss_pred ECCHHHHHHHHHHhCCcccCCCeEEEEEECchh
Confidence 999999999999 99999999 99999998754
No 173
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.61 E-value=3.5e-16 Score=110.43 Aligned_cols=73 Identities=22% Similarity=0.384 Sum_probs=68.1
Q ss_pred cEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeCCCC
Q psy14193 139 HSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTN 216 (239)
Q Consensus 139 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~~~~ 216 (239)
++|||+|||.++|+++|+++|++||+|..+.++.+ ++|||||+|.+.++|.+|+..++|..+.|+.|+|..+.
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 73 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELST 73 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEcc
Confidence 48999999999999999999999999999999876 78999999999999999999999999999999997653
No 174
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=1.1e-15 Score=107.04 Aligned_cols=76 Identities=14% Similarity=0.251 Sum_probs=68.6
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeCCCC
Q psy14193 137 NSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTN 216 (239)
Q Consensus 137 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~~~~ 216 (239)
..++|||+|||+++++++|+++|++||.|. +.++.+ .++|||||+|.+.++|.+|+..+||..+.|+.|+|..+.
T Consensus 18 ~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 92 (97)
T 2e5j_A 18 LAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALAR 92 (97)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECC
T ss_pred CCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 378999999999999999999999999997 666644 578999999999999999999999999999999998764
Q ss_pred C
Q psy14193 217 I 217 (239)
Q Consensus 217 ~ 217 (239)
.
T Consensus 93 ~ 93 (97)
T 2e5j_A 93 Q 93 (97)
T ss_dssp C
T ss_pred C
Confidence 3
No 175
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.61 E-value=4.9e-16 Score=112.28 Aligned_cols=102 Identities=16% Similarity=0.264 Sum_probs=85.4
Q ss_pred cceeEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEE
Q psy14193 22 SKLKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYV 101 (239)
Q Consensus 22 ~~~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV 101 (239)
.++.|||+++...... ++|+++|++||+|.+|.+. . ++.++|||||
T Consensus 7 ~~~~l~V~nlp~~~t~--------------~~l~~~F~~~G~v~~v~i~---~-----------------~~~~~g~afV 52 (115)
T 3lqv_A 7 VNRILYIRNLPYKITA--------------EEMYDIFGKYGPIRQIRVG---N-----------------TPETRGTAYV 52 (115)
T ss_dssp CCSEEEEESCCTTCCH--------------HHHHHHHHTTSCEEEEEEE---C-----------------STTTTTCEEE
T ss_pred CCCEEEEeCCCCCCCH--------------HHHHHHHHhcCCeEEEEEe---e-----------------CCCCCcEEEE
Confidence 3578899887655444 3999999999999999851 1 2345799999
Q ss_pred EeCCHHHHHHHHH-hCCCccCCeeEEEeccCCCCCCCCcEEEEcCCCCCCcHHHHHHHhhcCCC
Q psy14193 102 RFKNLESVEKALE-MNGHVIDEHTIRVDKALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGE 164 (239)
Q Consensus 102 ~f~~~e~a~~Ai~-~~~~~l~g~~i~v~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~ 164 (239)
+|.+.++|.+|++ +||..+.|+.|.|.++.+.... .+++...++++|.++|++||-
T Consensus 53 ~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~-------~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 53 VYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNANRAF-------QKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp EESSHHHHHHHHHHHTTCBSSSCBCEEEECCHHHHT-------TTSCHHHHHHHHHHHHHHHCC
T ss_pred EECCHHHHHHHHHHcCCCEECCeEEEEEEecCChhh-------hhhhHhHhHHHHHHHHHHhCC
Confidence 9999999999999 9999999999999999876543 678888899999999999983
No 176
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.61 E-value=8e-16 Score=112.81 Aligned_cols=76 Identities=22% Similarity=0.242 Sum_probs=68.1
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCCee--EEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeCC
Q psy14193 137 NSHSIFIGNIPFEAEEEELRKAFESCGEID--NVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQH 214 (239)
Q Consensus 137 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~--~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~~ 214 (239)
..++|||+|||+++|+++|+++|++| .|. +|+++.|+. |+++|||||+|.+.++|.+|+. .++..+++|.|.|..
T Consensus 41 ~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~V~~ 117 (126)
T 2hgm_A 41 NDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALG-KHKERIGHRYIEVFK 117 (126)
T ss_dssp SCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCCCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEEEEE
Confidence 46799999999999999999999999 677 899999975 9999999999999998888887 478999999988854
Q ss_pred C
Q psy14193 215 T 215 (239)
Q Consensus 215 ~ 215 (239)
+
T Consensus 118 a 118 (126)
T 2hgm_A 118 S 118 (126)
T ss_dssp E
T ss_pred C
Confidence 3
No 177
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=2.7e-15 Score=103.59 Aligned_cols=73 Identities=21% Similarity=0.394 Sum_probs=67.4
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeCCC
Q psy14193 136 SNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHT 215 (239)
Q Consensus 136 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~~~ 215 (239)
.+.++|||+|||.++|+++|+++|++||+|..+.+++ +||||+|.+.++|.+|+..+||..+.++.|+|..+
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 78 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK--------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELS 78 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 3478999999999999999999999999999999873 39999999999999999999999999999999866
Q ss_pred C
Q psy14193 216 N 216 (239)
Q Consensus 216 ~ 216 (239)
.
T Consensus 79 ~ 79 (90)
T 2dnp_A 79 T 79 (90)
T ss_dssp C
T ss_pred C
Confidence 4
No 178
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.60 E-value=9e-16 Score=119.39 Aligned_cols=80 Identities=15% Similarity=0.262 Sum_probs=75.2
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeCCC
Q psy14193 136 SNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHT 215 (239)
Q Consensus 136 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~~~ 215 (239)
.+.++|||+|||+.+++++|+++|+.||+|..|.++.+. +|.++|||||+|.+.++|.+|+..++|..+.++.|+|.++
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a 164 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLV 164 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 347899999999999999999999999999999999997 8999999999999999999999999999999999999765
Q ss_pred C
Q psy14193 216 N 216 (239)
Q Consensus 216 ~ 216 (239)
.
T Consensus 165 ~ 165 (177)
T 2f3j_A 165 A 165 (177)
T ss_dssp S
T ss_pred c
Confidence 4
No 179
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.60 E-value=1.5e-15 Score=104.05 Aligned_cols=81 Identities=21% Similarity=0.402 Sum_probs=68.3
Q ss_pred cceeEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEE
Q psy14193 22 SKLKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYV 101 (239)
Q Consensus 22 ~~~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV 101 (239)
....|||+.+......+ +|+++|++||+|.+|++ +.+..++.++|||||
T Consensus 5 ~~~~l~v~nlp~~~t~~--------------~l~~~F~~~G~i~~v~i-----------------~~~~~~~~~~g~afV 53 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTA--------------AIAAAFAPFGRISDARV-----------------VKDMATGKSKGYGFV 53 (87)
T ss_dssp -CEEEEEESCCTTCCHH--------------HHHHHHGGGSCEEEEEE-----------------EECTTTCCEEEEEEE
T ss_pred CceEEEEeCCCCCCCHH--------------HHHHHHHhcCCEeEEEE-----------------EecCCCCccceEEEE
Confidence 56788998776554443 99999999999999883 456667888999999
Q ss_pred EeCCHHHHHHHHH-hCCCccCCeeEEEeccCCC
Q psy14193 102 RFKNLESVEKALE-MNGHVIDEHTIRVDKALTT 133 (239)
Q Consensus 102 ~f~~~e~a~~Ai~-~~~~~l~g~~i~v~~~~~~ 133 (239)
+|.+.++|++|++ +|+..+.|+.|.|.++.++
T Consensus 54 ~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~k 86 (87)
T 3bs9_A 54 SFFNKWDAENAIQQMGGQWLGGRQIRTNWATRK 86 (87)
T ss_dssp EESSHHHHHHHHHHHTTCEETTEECEEEEEC--
T ss_pred EECCHHHHHHHHHHcCCCEECCeEEEEEecCCC
Confidence 9999999999999 9999999999999998865
No 180
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=6.6e-15 Score=102.46 Aligned_cols=74 Identities=15% Similarity=0.234 Sum_probs=66.1
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeCCCC
Q psy14193 137 NSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTN 216 (239)
Q Consensus 137 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~~~~ 216 (239)
..++|||+|||+++|+++|+++|++||+|.+| +.++.+|. ||||+|.+.++|.+|+. ++|..++|+.|+|..+.
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~ 80 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPRE 80 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECC
Confidence 35799999999999999999999999999987 55655655 99999999999998888 99999999999998653
No 181
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.60 E-value=3e-15 Score=101.56 Aligned_cols=80 Identities=14% Similarity=0.309 Sum_probs=68.3
Q ss_pred eeEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEEEe
Q psy14193 24 LKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRF 103 (239)
Q Consensus 24 ~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV~f 103 (239)
..|||+++...... ++|+++|++||+|.+|++ +.++.++.++|||||+|
T Consensus 2 ~~l~V~nlp~~~t~--------------~~l~~~f~~~G~i~~~~i-----------------~~~~~~~~~~g~afV~f 50 (83)
T 3md1_A 2 FNLFVGDLNVNVDD--------------ETLRNAFKDFPSYLSGHV-----------------MWDMQTGSSRGYGFVSF 50 (83)
T ss_dssp EEEEEECCCTTCCH--------------HHHHHHHTTSTTEEEEEE-----------------EECTTTCCEEEEEEEEE
T ss_pred eEEEEeCCCCCCCH--------------HHHHHHHHhcCCeeEEEE-----------------EEcCCCCCccceEEEEE
Confidence 46777766544333 499999999999999883 55667888899999999
Q ss_pred CCHHHHHHHHH-hCCCccCCeeEEEeccCCCC
Q psy14193 104 KNLESVEKALE-MNGHVIDEHTIRVDKALTTT 134 (239)
Q Consensus 104 ~~~e~a~~Ai~-~~~~~l~g~~i~v~~~~~~~ 134 (239)
.+.++|++|++ +|+..+.|++|.|.++.+++
T Consensus 51 ~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~ 82 (83)
T 3md1_A 51 TSQDDAQNAMDSMQGQDLNGRPLRINWAAKLE 82 (83)
T ss_dssp SCHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred CCHHHHHHHHHHhcCCeeCCcEEEEEecCcCC
Confidence 99999999999 99999999999999998764
No 182
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=1.9e-15 Score=109.07 Aligned_cols=66 Identities=21% Similarity=0.408 Sum_probs=60.2
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCC---CCCceEEEEEecChHHHHHHHHHh---CCc
Q psy14193 137 NSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHT---NIGKGFGYVNFKAEEEELRKAFES---CGE 203 (239)
Q Consensus 137 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~t---g~~kg~~fV~F~~~e~a~~a~~~~---~g~ 203 (239)
..++|||+|||+++|+++|+++|++||+|. +.++.+..+ |.++|||||+|.+.++|.+|+..+ +|.
T Consensus 7 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~~~G~ 78 (114)
T 2dnl_A 7 GSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLEEDGK 78 (114)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEEETTE
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhhcCCc
Confidence 468999999999999999999999999999 888888766 799999999999999999999988 555
No 183
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.59 E-value=5.1e-16 Score=107.64 Aligned_cols=68 Identities=16% Similarity=0.236 Sum_probs=60.2
Q ss_pred HHHHHhcccCC-ceeEEEEeecccccCCCccceeeecccccCCCCcceEEEEeCCHHHHHHHHH-h-CCCccCCeeEEEe
Q psy14193 52 SSVTSMFKPYG-EVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALE-M-NGHVIDEHTIRVD 128 (239)
Q Consensus 52 ~~l~~~F~~~G-~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV~f~~~e~a~~Ai~-~-~~~~l~g~~i~v~ 128 (239)
++|+++|++|| +|.+|+ +++|+.|+.++|||||+|.+.++|++|++ + ++..++|++|.|.
T Consensus 16 ~~l~~~F~~~G~~v~~v~-----------------i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~ 78 (91)
T 2lxi_A 16 DDIRGQLQSHGVQAREVR-----------------LMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMH 78 (91)
T ss_dssp HHHHHHHHHHTCCCSBCC-----------------SSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEE
T ss_pred HHHHHHHHHhCCEeEEEE-----------------EEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEE
Confidence 49999999999 799877 56778889999999999999999999998 6 4567999999999
Q ss_pred ccCCCCCC
Q psy14193 129 KALTTTKS 136 (239)
Q Consensus 129 ~~~~~~~~ 136 (239)
++.+++..
T Consensus 79 ~a~~~~~~ 86 (91)
T 2lxi_A 79 YSDPKPKI 86 (91)
T ss_dssp CCCSCCCC
T ss_pred EcCCCCCC
Confidence 99887653
No 184
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.59 E-value=3.9e-15 Score=105.44 Aligned_cols=72 Identities=21% Similarity=0.371 Sum_probs=66.6
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeCCCC
Q psy14193 137 NSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTN 216 (239)
Q Consensus 137 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~~~~ 216 (239)
+.++|||+|||+++|+++|+++|++||+|..+.++ +|||||+|.+.++|.+|+..++|..+.++.|+|..+.
T Consensus 10 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 81 (103)
T 2dgu_A 10 KVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAK 81 (103)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcC
Confidence 46899999999999999999999999999999886 4599999999999999999999999999999997653
No 185
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.59 E-value=2.9e-15 Score=107.13 Aligned_cols=90 Identities=18% Similarity=0.445 Sum_probs=75.1
Q ss_pred cccccccccceeEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCC
Q psy14193 14 PTQNRNLMSKLKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEK 93 (239)
Q Consensus 14 ~~~n~~~~~~~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~ 93 (239)
.++....-..+.|||+.+......+ +|+++|++||+|.+|++ +.+..++
T Consensus 17 ~~~~~~~~~~~~l~V~nLp~~~te~--------------~l~~~F~~~G~i~~v~i-----------------~~~~~~g 65 (108)
T 2jrs_A 17 NNLQKGSAGPMRLYVGSLHFNITED--------------MLRGIFEPFGRIESIQL-----------------MMDSETG 65 (108)
T ss_dssp CSSCCSCSSCEEEEEECCCSSCCHH--------------HHHHHHTTTSCEEEEEE-----------------EEETTTT
T ss_pred cccccCCCCCCEEEEeCCCCCCCHH--------------HHHHHHHhcCCeEEEEE-----------------EEcCCCC
Confidence 3444445567899999876554443 99999999999999884 4566778
Q ss_pred CCcceEEEEeCCHHHHHHHHH-hCCCccCCeeEEEeccCCCC
Q psy14193 94 RTNMNAYVRFKNLESVEKALE-MNGHVIDEHTIRVDKALTTT 134 (239)
Q Consensus 94 ~~~G~afV~f~~~e~a~~Ai~-~~~~~l~g~~i~v~~~~~~~ 134 (239)
+++|||||+|.+.++|++|++ +++..+.|++|.|.++.++.
T Consensus 66 ~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~k~ 107 (108)
T 2jrs_A 66 RSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTERT 107 (108)
T ss_dssp EEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEECSCSSC
T ss_pred ccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcccCC
Confidence 889999999999999999999 99999999999999998764
No 186
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=1.1e-14 Score=102.38 Aligned_cols=72 Identities=18% Similarity=0.398 Sum_probs=66.7
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcC--CCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeCC
Q psy14193 137 NSHSIFIGNIPFEAEEEELRKAFESC--GEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQH 214 (239)
Q Consensus 137 ~~~~l~V~nLp~~~t~~~l~~~F~~~--G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~~ 214 (239)
+.++|||+|||+++++++|+++|++| |.|..+.+. +|||||+|.+.++|.+|+..+||..+.++.|+|..
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 85 (99)
T 2cpd_A 14 SVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTL 85 (99)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEEC
T ss_pred CcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 47899999999999999999999999 899988764 67999999999999999999999999999999987
Q ss_pred CC
Q psy14193 215 TN 216 (239)
Q Consensus 215 ~~ 216 (239)
+.
T Consensus 86 a~ 87 (99)
T 2cpd_A 86 AK 87 (99)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 187
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.59 E-value=5.3e-16 Score=111.29 Aligned_cols=74 Identities=18% Similarity=0.249 Sum_probs=66.1
Q ss_pred CCcEEEEcCCCCC-CcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhC--CcEeeEEEEeeC
Q psy14193 137 NSHSIFIGNIPFE-AEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESC--GEIDNVRLIRDQ 213 (239)
Q Consensus 137 ~~~~l~V~nLp~~-~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~--g~~~~~r~l~~~ 213 (239)
+.++|||+|||++ +++++|+++|++||+|.++.+++ ++|||||+|.+.++|..|+..++ +..+.|+.|+|.
T Consensus 24 p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~ 97 (112)
T 1x4f_A 24 LGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVD 97 (112)
T ss_dssp CCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEE
T ss_pred CCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 4789999999998 99999999999999999999864 47899999999999999999875 456899999997
Q ss_pred CCC
Q psy14193 214 HTN 216 (239)
Q Consensus 214 ~~~ 216 (239)
.+.
T Consensus 98 ~a~ 100 (112)
T 1x4f_A 98 LSE 100 (112)
T ss_dssp EEC
T ss_pred ECc
Confidence 664
No 188
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.59 E-value=8.4e-16 Score=110.51 Aligned_cols=73 Identities=16% Similarity=0.121 Sum_probs=67.4
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeCCC
Q psy14193 137 NSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHT 215 (239)
Q Consensus 137 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~~~ 215 (239)
..++|||+|||+++++++|+++|++||.|..+.++. ++|||||+|.+.++|.+|+..+||..+.++.|+|.++
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 81 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWA 81 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 367999999999999999999999999999998864 5789999999999999999999999999999999755
No 189
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.59 E-value=6e-16 Score=106.95 Aligned_cols=80 Identities=9% Similarity=0.096 Sum_probs=63.5
Q ss_pred eEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccCC--ceeEEEEeecccccCCCccceeeecccccCCCCcceEEEE
Q psy14193 25 KVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYG--EVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVR 102 (239)
Q Consensus 25 ~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G--~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV~ 102 (239)
+|||+++...... ++|+++|++|| .|.+|+ ++.+..+++++|||||+
T Consensus 3 ~l~V~nL~~~~t~--------------~~l~~~F~~~G~~~v~~v~-----------------i~~~~~~g~~kG~afV~ 51 (90)
T 3p5t_L 3 ALYIGNLTWWTTD--------------EDLTEAVHSLGVNDILEIK-----------------FFENRANGQSKGFALVG 51 (90)
T ss_dssp -CEEESCCTTCCH--------------HHHHHHHHTTTCCCCCCEE-----------------EEECTTTCCEEEEEEEC
T ss_pred EEEEeCCCCCCCH--------------HHHHHHHHHhCCCceEEEE-----------------EEecCCCCccCcEEEEE
Confidence 5677766544333 49999999999 999988 45677788999999999
Q ss_pred eCCHHHHHHHHH-hCCCccCCeeEEEeccCCCCC
Q psy14193 103 FKNLESVEKALE-MNGHVIDEHTIRVDKALTTTK 135 (239)
Q Consensus 103 f~~~e~a~~Ai~-~~~~~l~g~~i~v~~~~~~~~ 135 (239)
|.+.++|++|++ +|+..+.|+.|.|.++.+...
T Consensus 52 f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~~~~~ 85 (90)
T 3p5t_L 52 VGSEASSKKLMDLLPKRELHGQNPVVTPSNKLEH 85 (90)
T ss_dssp C-CHHHHHHHHHHGGGSCSSSCCCEECCC-----
T ss_pred ECCHHHHHHHHHHcCCCeeCCEEEEEEECCCCcc
Confidence 999999999998 999999999999999987754
No 190
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.59 E-value=7.3e-16 Score=115.70 Aligned_cols=78 Identities=17% Similarity=0.251 Sum_probs=69.6
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEE--------EEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeE
Q psy14193 136 SNSHSIFIGNIPFEAEEEELRKAFESCGEIDNV--------RLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNV 207 (239)
Q Consensus 136 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v--------~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~ 207 (239)
.+.++|||+|||+++|+++|+++|++||.|..+ .+. .+|.++|||||+|.+.++|.+|+..+||..+.|
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~---~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g 119 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLM---KEGRMKGQAFIGLPNEKAAAKALKEANGYVLFG 119 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEE---EETTTEEEEEEECSSHHHHHHHHHHHTTBEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEec---cCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCC
Confidence 346899999999999999999999999998764 222 468899999999999999999999999999999
Q ss_pred EEEeeCCCC
Q psy14193 208 RLIRDQHTN 216 (239)
Q Consensus 208 r~l~~~~~~ 216 (239)
+.|+|..+.
T Consensus 120 ~~l~V~~a~ 128 (143)
T 3egn_A 120 KPMVVQFAR 128 (143)
T ss_dssp EECEEEECC
T ss_pred cEEEEEECC
Confidence 999998764
No 191
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=6e-15 Score=102.71 Aligned_cols=84 Identities=17% Similarity=0.434 Sum_probs=71.7
Q ss_pred cceeEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEE
Q psy14193 22 SKLKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYV 101 (239)
Q Consensus 22 ~~~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV 101 (239)
..+.|||+++...... ++|+++|++||+|.+|++ +.+..++.++|||||
T Consensus 4 ~~~~l~v~nlp~~~t~--------------~~l~~~f~~~G~v~~v~i-----------------~~~~~~~~~~g~afV 52 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITE--------------DMLRGIFEPFGKIDNIVL-----------------MKDSDTGRSKGYGFI 52 (95)
T ss_dssp CCCEEEEESCCTTCCH--------------HHHHHHHTTTSCEEEEEE-----------------ECCSSSCCCCSEEEE
T ss_pred CCcEEEEeCCCCCCCH--------------HHHHHHHHhcCCEeEEEE-----------------eecCCCCceeeEEEE
Confidence 3568888877555444 399999999999999883 556678889999999
Q ss_pred EeCCHHHHHHHHH-hCCCccCCeeEEEeccCCCCCC
Q psy14193 102 RFKNLESVEKALE-MNGHVIDEHTIRVDKALTTTKS 136 (239)
Q Consensus 102 ~f~~~e~a~~Ai~-~~~~~l~g~~i~v~~~~~~~~~ 136 (239)
+|.+.++|++|++ +|+..+.|++|.|.++.++...
T Consensus 53 ~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 88 (95)
T 2dnz_A 53 TFSDSECARRALEQLNGFELAGRPMRVGHVTERLDG 88 (95)
T ss_dssp EESCHHHHHHHHHHHTTCCSSSSCCEEEESSCCCCC
T ss_pred EECCHHHHHHHHHHhCCCeeCCcEEEEEEcccccCC
Confidence 9999999999999 9999999999999999877653
No 192
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.58 E-value=3.2e-15 Score=102.80 Aligned_cols=72 Identities=13% Similarity=0.093 Sum_probs=67.1
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeCCC
Q psy14193 137 NSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHT 215 (239)
Q Consensus 137 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~~~ 215 (239)
..++|||+|||+++++++|+++|++| +|.++++. .++|||||+|.+.++|.+|+..+||..++|+.|++..+
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 75 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQ 75 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEc
Confidence 35799999999999999999999999 99999884 47899999999999999999999999999999999866
No 193
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=6.6e-15 Score=103.39 Aligned_cols=84 Identities=20% Similarity=0.298 Sum_probs=72.2
Q ss_pred cceeEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEE
Q psy14193 22 SKLKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYV 101 (239)
Q Consensus 22 ~~~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV 101 (239)
..+.|||+.+...... ++|+++|++||+|.+|+ ++.++.++.++|||||
T Consensus 9 ~~~~l~V~nlp~~~t~--------------~~l~~~F~~~G~i~~v~-----------------i~~~~~~~~~~g~afV 57 (99)
T 2dgs_A 9 KSNKIFVGGIPHNCGE--------------TELREYFKKFGVVTEVV-----------------MIYDAEKQRPRGFGFI 57 (99)
T ss_dssp SCCEEEEESCCSSCCH--------------HHHHHHHSSSSCEEEEE-----------------ECCCTTTCSCCSEEEE
T ss_pred CCCEEEEeCCCCCCCH--------------HHHHHHHHhcCCeEEEE-----------------EEeCCCCCCCCceEEE
Confidence 4678999877655444 39999999999999988 3556678889999999
Q ss_pred EeCCHHHHHHHHHhCCCccCCeeEEEeccCCCCCC
Q psy14193 102 RFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKS 136 (239)
Q Consensus 102 ~f~~~e~a~~Ai~~~~~~l~g~~i~v~~~~~~~~~ 136 (239)
+|.+.++|++|+++++..+.|+.|.|.++.++...
T Consensus 58 ~f~~~~~a~~A~~~~~~~~~g~~l~V~~a~~~~~~ 92 (99)
T 2dgs_A 58 TFEDEQSVDQAVNMHFHDIMGKKVEVKRAEPRDSK 92 (99)
T ss_dssp EESSHHHHHHHHHHCCCBSSSCBCEEEECCCCCCC
T ss_pred EECCHHHHHHHHHhCCCEECCeEEEEEECCCCccc
Confidence 99999999999999999999999999999877654
No 194
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.58 E-value=5.1e-15 Score=103.41 Aligned_cols=82 Identities=17% Similarity=0.266 Sum_probs=69.8
Q ss_pred ceeEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEEE
Q psy14193 23 KLKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVR 102 (239)
Q Consensus 23 ~~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV~ 102 (239)
.+.|||+.+...... ++|+++|++||+|.+|+ ++.+..++.++|||||+
T Consensus 2 ~~~l~V~nLp~~~t~--------------~~l~~~F~~~G~i~~v~-----------------i~~~~~~g~~~g~afV~ 50 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTE--------------EQILDLCSNVGPVINLK-----------------MMFDPQTGRSKGYAFIE 50 (96)
T ss_dssp CSEEEEESCCTTCCH--------------HHHHHHHHTTSCEEEEE-----------------CCBCTTTCCBCSEEEEE
T ss_pred CcEEEEECCCCCCCH--------------HHHHHHHHhcCCEEEEE-----------------EEeCCCCCccceEEEEE
Confidence 357888876554433 49999999999999988 35566778889999999
Q ss_pred eCCHHHHHHHHH-hCCCccCCeeEEEeccCCCCC
Q psy14193 103 FKNLESVEKALE-MNGHVIDEHTIRVDKALTTTK 135 (239)
Q Consensus 103 f~~~e~a~~Ai~-~~~~~l~g~~i~v~~~~~~~~ 135 (239)
|.+.++|++|++ +|+..+.|+.|.|.++.++..
T Consensus 51 f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 84 (96)
T 2x1f_A 51 FRDLESSASAVRNLNGYQLGSRFLKCGYSSNSDI 84 (96)
T ss_dssp ESSHHHHHHHHHHHTTCEETTEECEEEECSCSSG
T ss_pred ECCHHHHHHHHHHhCCCeECCeEEEEEEcCCCCC
Confidence 999999999999 999999999999999987753
No 195
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.58 E-value=2.1e-15 Score=103.72 Aligned_cols=85 Identities=16% Similarity=0.241 Sum_probs=72.0
Q ss_pred ccccceeEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcce
Q psy14193 19 NLMSKLKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMN 98 (239)
Q Consensus 19 ~~~~~~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~ 98 (239)
+....+.|||+++......+ +|+++|++||+|.+|++ ..+..++.++||
T Consensus 2 ~~~~~~~l~V~nlp~~~t~~--------------~l~~~F~~~G~i~~v~i-----------------~~~~~~~~~~g~ 50 (89)
T 3ucg_A 2 MEADARSIYVGNVDYGATAE--------------ELEAHFHGCGSVNRVTI-----------------LCDKFSGHPKGF 50 (89)
T ss_dssp HHHHHTEEEEESCCTTCCHH--------------HHHHHHGGGCCEEEEEE-----------------EESCSSSSCCEE
T ss_pred CCCcCCEEEEeCCCCCCCHH--------------HHHHHHHhCCCEEEEEE-----------------EecCCCCCcceE
Confidence 34467889998876554443 99999999999999884 456667888999
Q ss_pred EEEEeCCHHHHHHHHHhCCCccCCeeEEEeccCCCC
Q psy14193 99 AYVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTT 134 (239)
Q Consensus 99 afV~f~~~e~a~~Ai~~~~~~l~g~~i~v~~~~~~~ 134 (239)
|||+|.+.++|++|+.+|+..+.|+.|.|.++.+..
T Consensus 51 afV~f~~~~~a~~a~~~~g~~~~g~~l~V~~a~~~~ 86 (89)
T 3ucg_A 51 AYIEFSDKESVRTSLALDESLFRGRQIKVIPKRTNR 86 (89)
T ss_dssp EEEEESSTHHHHHHGGGTTCEETTEECEEEETTTTS
T ss_pred EEEEECCHHHHHHHHhcCCCEECCcEEEEEEccCCC
Confidence 999999999999999999999999999999998753
No 196
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=7.3e-15 Score=103.12 Aligned_cols=85 Identities=16% Similarity=0.241 Sum_probs=72.8
Q ss_pred ccceeEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEE
Q psy14193 21 MSKLKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAY 100 (239)
Q Consensus 21 ~~~~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~af 100 (239)
...+.|||+.+......+ +|+++|++||+|.+|+ ++.+..++.++||||
T Consensus 6 ~~~~~l~V~nlp~~~t~~--------------~l~~~F~~~G~i~~v~-----------------i~~~~~~~~~~g~af 54 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEE--------------DLEKLFSAYGPLSELH-----------------YPIDSLTKKPKGFAF 54 (99)
T ss_dssp CSCEEEEEECCCTTCCHH--------------HHHHHHHTTSCEEEEE-----------------CCCCTTTCCCCSEEE
T ss_pred CCCCEEEEeCCCCCCCHH--------------HHHHHHHhcCCEeEEE-----------------EEecCCCCCcCeEEE
Confidence 456889998876554444 9999999999999988 345666788899999
Q ss_pred EEeCCHHHHHHHHH-hCCCccCCeeEEEeccCCCCCC
Q psy14193 101 VRFKNLESVEKALE-MNGHVIDEHTIRVDKALTTTKS 136 (239)
Q Consensus 101 V~f~~~e~a~~Ai~-~~~~~l~g~~i~v~~~~~~~~~ 136 (239)
|+|.+.++|++|++ +|+..+.|++|.|.++.++...
T Consensus 55 V~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 91 (99)
T 1whw_A 55 VTFMFPEHAVKAYAEVDGQVFQGRMLHVLPSTIKKEA 91 (99)
T ss_dssp EEESSHHHHHHHHHHTTTEESSSCEEEEEECCCCSTT
T ss_pred EEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCCccc
Confidence 99999999999998 9999999999999999887654
No 197
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=4.1e-15 Score=105.76 Aligned_cols=84 Identities=15% Similarity=0.255 Sum_probs=72.2
Q ss_pred ccceeEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEE
Q psy14193 21 MSKLKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAY 100 (239)
Q Consensus 21 ~~~~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~af 100 (239)
..++.|||+.+......+ +|+++|++||+|.+|++ +.+..++.++||||
T Consensus 21 ~~~~~l~V~nlp~~~t~~--------------~l~~~f~~~G~i~~v~i-----------------~~~~~~~~~~g~af 69 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEE--------------DIHDKFAEYGEIKNIHL-----------------NLDRRTGYLKGYTL 69 (106)
T ss_dssp TTBEEEEEECCCTTCCHH--------------HHHHHHGGGSCEEEEEE-----------------EECTTTSSEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHH--------------HHHHHHhccCCeEEEEE-----------------EecCCCCceeeEEE
Confidence 356789998776654444 99999999999999883 55677888899999
Q ss_pred EEeCCHHHHHHHHH-hCCCccCCeeEEEeccCCCCC
Q psy14193 101 VRFKNLESVEKALE-MNGHVIDEHTIRVDKALTTTK 135 (239)
Q Consensus 101 V~f~~~e~a~~Ai~-~~~~~l~g~~i~v~~~~~~~~ 135 (239)
|+|.+.++|++|++ +|+..+.|+.|.|.++.++..
T Consensus 70 V~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~ 105 (106)
T 1p27_B 70 VEYETYKEAQAAMEGLNGQDLMGQPISVDWCFVRGP 105 (106)
T ss_dssp EEESCHHHHHHHHHHHTTCBSSSSBCEEEESEESSC
T ss_pred EEECCHHHHHHHHHHhcCCEECCcEEEEEeecCCCC
Confidence 99999999999999 999999999999999987653
No 198
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=2.7e-15 Score=104.21 Aligned_cols=73 Identities=15% Similarity=0.309 Sum_probs=65.6
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCC-eeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCC-cEeeEEEEeeCC
Q psy14193 137 NSHSIFIGNIPFEAEEEELRKAFESCGE-IDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCG-EIDNVRLIRDQH 214 (239)
Q Consensus 137 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~-i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g-~~~~~r~l~~~~ 214 (239)
+.++|||+|||.++|+++|+++|++||. |..+.+. ++|||||+|.+.++|.+|+..+|| ..+.++.|++..
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ 79 (93)
T 2cqh_A 7 GMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDY 79 (93)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEE
Confidence 4679999999999999999999999999 6666552 478999999999999999999999 999999999986
Q ss_pred CC
Q psy14193 215 TN 216 (239)
Q Consensus 215 ~~ 216 (239)
+.
T Consensus 80 a~ 81 (93)
T 2cqh_A 80 SV 81 (93)
T ss_dssp CC
T ss_pred cc
Confidence 64
No 199
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=4.6e-15 Score=106.54 Aligned_cols=72 Identities=17% Similarity=0.311 Sum_probs=64.1
Q ss_pred CCcEEEE--cCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEe-----eEEE
Q psy14193 137 NSHSIFI--GNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEID-----NVRL 209 (239)
Q Consensus 137 ~~~~l~V--~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~-----~~r~ 209 (239)
+.++||| +|||+++++++|+++|++||+|.++.++. .+|||||+|.+.++|.+|+..|||..+ .++.
T Consensus 24 pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~------~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~ 97 (114)
T 2cq2_A 24 ATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKIT 97 (114)
T ss_dssp CCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT------TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEE
T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcE
Confidence 4679999 77999999999999999999999998753 378999999999999999999999988 6788
Q ss_pred EeeCC
Q psy14193 210 IRDQH 214 (239)
Q Consensus 210 l~~~~ 214 (239)
|.+..
T Consensus 98 l~v~~ 102 (114)
T 2cq2_A 98 LYLNF 102 (114)
T ss_dssp CEEEE
T ss_pred EEEEe
Confidence 77653
No 200
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=6.4e-15 Score=104.22 Aligned_cols=85 Identities=15% Similarity=0.303 Sum_probs=72.9
Q ss_pred ccceeEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEE
Q psy14193 21 MSKLKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAY 100 (239)
Q Consensus 21 ~~~~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~af 100 (239)
-..+.|||+++......+ +|+++|++||+|.+|++ +.++.++.++||||
T Consensus 13 ~~~~~l~V~nlp~~~t~~--------------~l~~~f~~~G~i~~v~i-----------------~~~~~~~~~~g~af 61 (103)
T 2cq0_A 13 DDNATIRVTNLSEDTRET--------------DLQELFRPFGSISRIYL-----------------AKDKTTGQSKGFAF 61 (103)
T ss_dssp SSSEEEEEESCCTTCCHH--------------HHHTTSTTTCCEEEEEE-----------------EECSSSCSEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHH--------------HHHHHHHhCCCeEEEEE-----------------eecCCCCceeeEEE
Confidence 356889998876654444 99999999999999884 45667788899999
Q ss_pred EEeCCHHHHHHHHH-hCCCccCCeeEEEeccCCCCCC
Q psy14193 101 VRFKNLESVEKALE-MNGHVIDEHTIRVDKALTTTKS 136 (239)
Q Consensus 101 V~f~~~e~a~~Ai~-~~~~~l~g~~i~v~~~~~~~~~ 136 (239)
|+|.+.++|++|++ +|+..+.|+.|.|.++.++...
T Consensus 62 V~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 98 (103)
T 2cq0_A 62 ISFHRREDAARAIAGVSGFGYDHLILNVEWAKPSTNS 98 (103)
T ss_dssp EEESSHHHHHHHHHHTTTCEETTEECEEEESSCCCCS
T ss_pred EEECCHHHHHHHHHHcCCCeeCCcEEEEEECCCCCCC
Confidence 99999999999999 9999999999999999877643
No 201
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.57 E-value=7.8e-15 Score=101.19 Aligned_cols=71 Identities=21% Similarity=0.352 Sum_probs=60.8
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEee--EEEEeeCC
Q psy14193 137 NSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDN--VRLIRDQH 214 (239)
Q Consensus 137 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~--~r~l~~~~ 214 (239)
+..+|||+|||+++|+++|+++|++||+|.+++++++ ++|||||+|.+.++|. .++|..+. ++.+.+..
T Consensus 10 ~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~----~~~~~~~~~~g~~v~v~~ 80 (89)
T 3d2w_A 10 HGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQ----SLCGEDLIIKGISVHISN 80 (89)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHH----HHTTCEEEETTEEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHH----HHcCCCcccCCEEEEEEE
Confidence 4689999999999999999999999999999999875 7999999999999765 46676654 88888876
Q ss_pred CC
Q psy14193 215 TN 216 (239)
Q Consensus 215 ~~ 216 (239)
+.
T Consensus 81 a~ 82 (89)
T 3d2w_A 81 AE 82 (89)
T ss_dssp CC
T ss_pred cC
Confidence 53
No 202
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.57 E-value=2.5e-15 Score=104.94 Aligned_cols=77 Identities=21% Similarity=0.322 Sum_probs=64.6
Q ss_pred eEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccCCc--eeEEEEeecccccCCCccceeeecccccCCCCcceEEEE
Q psy14193 25 KVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGE--VETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVR 102 (239)
Q Consensus 25 ~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~--I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV~ 102 (239)
.|||+++...... ++|+++|++||. |.+|+ +++|+.|++++|||||+
T Consensus 11 tlfV~nL~~~~te--------------e~L~~~F~~~G~i~v~~v~-----------------i~~d~~tg~srG~aFV~ 59 (95)
T 2lkz_A 11 TIILRNIAPHTVV--------------DSIMTALSPYASLAVNNIR-----------------LIKDKQTQQNRGFAFVQ 59 (95)
T ss_dssp EEEEESCCTTCCH--------------HHHHHHSTTTCCCCGGGEE-----------------CCCCSSSSSCSSEEEEE
T ss_pred EEEEeCCCCcCCH--------------HHHHHHHHhhCCccEEEEE-----------------EEecCCCCCCceEeEEE
Confidence 5778776555444 499999999996 55666 56788899999999999
Q ss_pred eCCHHHHHHHHH-hCCC----ccCCeeEEEeccCC
Q psy14193 103 FKNLESVEKALE-MNGH----VIDEHTIRVDKALT 132 (239)
Q Consensus 103 f~~~e~a~~Ai~-~~~~----~l~g~~i~v~~~~~ 132 (239)
|.+.++|++|++ +|+. .++|++|.|.++..
T Consensus 60 f~~~~~A~~Ai~~lng~~~~~~i~Gr~i~V~~Aks 94 (95)
T 2lkz_A 60 LSSAMDASQLLQILQSLHPPLKIDGKTIGVDFAKS 94 (95)
T ss_dssp CSSSHHHHHHHHHHHSSSSCEEETTEEEEEEECCC
T ss_pred ECCHHHHHHHHHHhcCCCCCceECCEEEEEEEccC
Confidence 999999999999 9987 48999999999864
No 203
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.57 E-value=1.4e-14 Score=102.98 Aligned_cols=79 Identities=13% Similarity=0.173 Sum_probs=69.7
Q ss_pred CCcEEEEcCCCC-----CCcHHHHHHHhhcCCCeeEEEEeecCCC-CCCceEEEEEecChHHHHHHHHHhCCcEeeEEEE
Q psy14193 137 NSHSIFIGNIPF-----EAEEEELRKAFESCGEIDNVRLIRDQHT-NIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLI 210 (239)
Q Consensus 137 ~~~~l~V~nLp~-----~~t~~~l~~~F~~~G~i~~v~i~~~~~t-g~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l 210 (239)
++++|++.|+.. +-++++|++.|++||+|.++.++.++.+ +.++|||||+|.+.++|.+|+..|||..+.||.|
T Consensus 7 ~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~i 86 (105)
T 2pe8_A 7 PTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVV 86 (105)
T ss_dssp CCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcEE
Confidence 367999999963 2378999999999999999999998654 6889999999999999999999999999999999
Q ss_pred eeCCC
Q psy14193 211 RDQHT 215 (239)
Q Consensus 211 ~~~~~ 215 (239)
++..+
T Consensus 87 ~v~~a 91 (105)
T 2pe8_A 87 KACFY 91 (105)
T ss_dssp EEEEC
T ss_pred EEEEc
Confidence 98654
No 204
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.56 E-value=2.5e-15 Score=105.09 Aligned_cols=71 Identities=20% Similarity=0.405 Sum_probs=66.0
Q ss_pred CCcEEEEcCCCC-CCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeCCC
Q psy14193 137 NSHSIFIGNIPF-EAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHT 215 (239)
Q Consensus 137 ~~~~l~V~nLp~-~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~~~ 215 (239)
+.++|||+|||. ++++++|+++|++||+|..+.+. +|||||+|.+.++|..|+..++|..+.++.|+|..+
T Consensus 9 ~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 80 (96)
T 2kvi_A 9 PKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVS 80 (96)
T ss_dssp CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEE
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEc
Confidence 478999999998 99999999999999999999884 689999999999999999999999999999988754
No 205
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.56 E-value=6.5e-15 Score=100.82 Aligned_cols=70 Identities=24% Similarity=0.479 Sum_probs=64.9
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcC----C-------CeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEe
Q psy14193 137 NSHSIFIGNIPFEAEEEELRKAFESC----G-------EIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEID 205 (239)
Q Consensus 137 ~~~~l~V~nLp~~~t~~~l~~~F~~~----G-------~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~ 205 (239)
+.++|||+|||+++++++|+++|++| | +|.++.+.++ +|||||+|.+.++|.+|+ .+||..+
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~~ 77 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGIIF 77 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCEE
Confidence 36799999999999999999999999 8 8999988754 789999999999999999 9999999
Q ss_pred eEEEEeeC
Q psy14193 206 NVRLIRDQ 213 (239)
Q Consensus 206 ~~r~l~~~ 213 (239)
.|+.|+++
T Consensus 78 ~g~~l~V~ 85 (87)
T 2hzc_A 78 QGQSLKIR 85 (87)
T ss_dssp TTEECEEE
T ss_pred CCeEEEEe
Confidence 99999985
No 206
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=7.8e-15 Score=104.10 Aligned_cols=84 Identities=18% Similarity=0.187 Sum_probs=72.1
Q ss_pred cceeEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEE
Q psy14193 22 SKLKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYV 101 (239)
Q Consensus 22 ~~~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV 101 (239)
..+.|||+.+......+ +|+++|++||+|.+|+ ++.+..++.++|||||
T Consensus 14 ~~~~l~V~nlp~~~t~~--------------~l~~~F~~~G~i~~v~-----------------i~~~~~~~~~~g~afV 62 (105)
T 1x5u_A 14 QDATVYVGGLDEKVSEP--------------LLWELFLQAGPVVNTH-----------------MPKDRVTGQHQGYGFV 62 (105)
T ss_dssp TTTEEEEECCCTTCCHH--------------HHHHHHHTTSCEEEEE-----------------CCBCSSSCSBCSCEEE
T ss_pred CCCEEEEeCCCCCCCHH--------------HHHHHHHhcCCeEEEE-----------------EEecCCCCcCCcEEEE
Confidence 46789998776554443 9999999999999988 3556667888999999
Q ss_pred EeCCHHHHHHHHH-hCCCccCCeeEEEeccCCCCCC
Q psy14193 102 RFKNLESVEKALE-MNGHVIDEHTIRVDKALTTTKS 136 (239)
Q Consensus 102 ~f~~~e~a~~Ai~-~~~~~l~g~~i~v~~~~~~~~~ 136 (239)
+|.+.++|++|++ +|+..+.|++|.|.++.+....
T Consensus 63 ~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 98 (105)
T 1x5u_A 63 EFLSEEDADYAIKIMDMIKLYGKPIRVNKASAHNKN 98 (105)
T ss_dssp EESSHHHHHHHHHHSSSCBCSSCBCEEEETTTTSCC
T ss_pred EECCHHHHHHHHHHhCCCeECCeEEEEEECCCCCcC
Confidence 9999999999999 9999999999999999877643
No 207
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=5.5e-15 Score=104.36 Aligned_cols=86 Identities=19% Similarity=0.259 Sum_probs=73.4
Q ss_pred cccceeEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceE
Q psy14193 20 LMSKLKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNA 99 (239)
Q Consensus 20 ~~~~~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~a 99 (239)
.-..+.|||+.+...... ++|+++|++||+|.+|+ ++.+..++.++|||
T Consensus 9 ~~~~~~l~V~nLp~~~t~--------------~~l~~~f~~~G~i~~v~-----------------i~~~~~~~~~~g~a 57 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDD--------------KVLHAAFIPFGDITDIQ-----------------IPLDYETEKHRGFA 57 (102)
T ss_dssp CCCCSCEEEESCCSSCCH--------------HHHHHHHTTTSCCCCEE-----------------CCCCSSSCCCSSEE
T ss_pred CCCCCEEEEeCCCCCCCH--------------HHHHHHhhccCCEEEEE-----------------EEecCCCCCcceEE
Confidence 346788999877655444 49999999999999988 45566788899999
Q ss_pred EEEeCCHHHHHHHHH-hCCCccCCeeEEEeccCCCCCC
Q psy14193 100 YVRFKNLESVEKALE-MNGHVIDEHTIRVDKALTTTKS 136 (239)
Q Consensus 100 fV~f~~~e~a~~Ai~-~~~~~l~g~~i~v~~~~~~~~~ 136 (239)
||+|.+.++|++|++ +|+..+.|+.|.|.++.+....
T Consensus 58 fV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 95 (102)
T 2cqb_A 58 FVEFELAEDAAAAIDNMNESELFGRTIRVNLAKPMRIK 95 (102)
T ss_dssp EECCSSHHHHHHHHHHHTTEEETTEEEEEEECCCCCCC
T ss_pred EEEECCHHHHHHHHHHhCCCEECCcEEEEEeCCCCCCC
Confidence 999999999999999 9999999999999999877654
No 208
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.56 E-value=6.4e-15 Score=100.39 Aligned_cols=79 Identities=20% Similarity=0.301 Sum_probs=67.9
Q ss_pred cceeEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEE
Q psy14193 22 SKLKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYV 101 (239)
Q Consensus 22 ~~~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV 101 (239)
..+.|||+++...... ++|+++|++||+|.+|+ +..+..++.++|||||
T Consensus 6 ~~~~l~V~nl~~~~~~--------------~~l~~~f~~~G~i~~v~-----------------i~~~~~~~~~~g~afV 54 (85)
T 3mdf_A 6 TKRVLYVGGLAEEVDD--------------KVLHAAFIPFGDITDIQ-----------------IPLDYETEKHRGFAFV 54 (85)
T ss_dssp CSSEEEEECCCTTCCH--------------HHHHHHHGGGSCEEEEE-----------------CCEETTTTEECSEEEE
T ss_pred CCCEEEEECCCCCCCH--------------HHHHHHHhccCCEEEEE-----------------EEECCCCCccccEEEE
Confidence 5678999887655443 49999999999999988 3456667888999999
Q ss_pred EeCCHHHHHHHHH-hCCCccCCeeEEEeccC
Q psy14193 102 RFKNLESVEKALE-MNGHVIDEHTIRVDKAL 131 (239)
Q Consensus 102 ~f~~~e~a~~Ai~-~~~~~l~g~~i~v~~~~ 131 (239)
+|.+.++|++|++ +|+..+.|++|.|.+++
T Consensus 55 ~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ak 85 (85)
T 3mdf_A 55 EFELAEDAAAAIDNMNESELFGRTIRVNLAK 85 (85)
T ss_dssp EESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred EECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 9999999999998 99999999999999874
No 209
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=2.4e-14 Score=100.23 Aligned_cols=72 Identities=14% Similarity=0.207 Sum_probs=66.4
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeCCCC
Q psy14193 137 NSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTN 216 (239)
Q Consensus 137 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~~~~ 216 (239)
+.++|||+|+ ++|+++|+++|++||+|..+.+. .++|||||+|.+.++|.+|+..++|..+.++.|+|.++.
T Consensus 14 ~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~ 85 (97)
T 1x5p_A 14 KGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIAR 85 (97)
T ss_dssp CCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCS
T ss_pred CCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECC
Confidence 4789999996 89999999999999999999884 468899999999999999999999999999999998764
No 210
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=8.8e-15 Score=103.52 Aligned_cols=84 Identities=23% Similarity=0.320 Sum_probs=72.2
Q ss_pred cceeEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEE
Q psy14193 22 SKLKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYV 101 (239)
Q Consensus 22 ~~~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV 101 (239)
..+.|||+.+......+ +|+++|++||+|.+|+ ++.+..++.++|||||
T Consensus 12 ~~~~l~V~nLp~~~t~~--------------~l~~~f~~~G~i~~v~-----------------i~~~~~~~~~~g~afV 60 (103)
T 2dnm_A 12 GMITLKVDNLTYRTSPD--------------SLRRVFEKYGRVGDVY-----------------IPREPHTKAPRGFAFV 60 (103)
T ss_dssp CCCEEEEESCCTTCCHH--------------HHHHHHTTTSCEEEEE-----------------CCBCSSSCSBCSCEEE
T ss_pred CCeEEEEeCCCCCCCHH--------------HHHHHHHhcCCEEEEE-----------------EEeCCCCCCCCeEEEE
Confidence 45789998876654444 9999999999999988 4556677889999999
Q ss_pred EeCCHHHHHHHHH-hCCCccCCeeEEEeccCCCCCC
Q psy14193 102 RFKNLESVEKALE-MNGHVIDEHTIRVDKALTTTKS 136 (239)
Q Consensus 102 ~f~~~e~a~~Ai~-~~~~~l~g~~i~v~~~~~~~~~ 136 (239)
+|.+.++|++|++ +|+..+.|+.|.|.++.+....
T Consensus 61 ~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 96 (103)
T 2dnm_A 61 RFHDRRDAQDAEAAMDGAELDGRELRVQVARYGRRD 96 (103)
T ss_dssp EESSSSHHHHHHHHHSSCCBTTBCCEEEECSSCCSC
T ss_pred EECCHHHHHHHHHHcCCCEECCcEEEEEECCcCCCC
Confidence 9999999999999 9999999999999999876543
No 211
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.56 E-value=5.6e-15 Score=101.32 Aligned_cols=84 Identities=25% Similarity=0.394 Sum_probs=69.2
Q ss_pred ccceeEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCC-CcceE
Q psy14193 21 MSKLKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKR-TNMNA 99 (239)
Q Consensus 21 ~~~~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~-~~G~a 99 (239)
+..+.|||+++...... ++|+++|++||+|.+|++ ..+..++. ++|||
T Consensus 2 ~~~~~l~V~nlp~~~t~--------------~~l~~~F~~~G~i~~~~i-----------------~~~~~~~~~~~g~a 50 (88)
T 4a8x_A 2 MKPTKVHIGRLTRNVTK--------------DHIMEIFSTYGKIKMIDM-----------------PVERMHPHLSKGYA 50 (88)
T ss_dssp CCCCEEEEECCCTTCCH--------------HHHHHHHHTTSCEEEEEC-----------------CEETTEEEEECSEE
T ss_pred CCCCEEEEeCCCCCCCH--------------HHHHHHHHhCCCEEEEEE-----------------EeCCCCCCCCCcEE
Confidence 35678899877655444 399999999999999983 33444444 78999
Q ss_pred EEEeCCHHHHHHHHH-hCCCccCCeeEEEeccCCCCC
Q psy14193 100 YVRFKNLESVEKALE-MNGHVIDEHTIRVDKALTTTK 135 (239)
Q Consensus 100 fV~f~~~e~a~~Ai~-~~~~~l~g~~i~v~~~~~~~~ 135 (239)
||+|.+.++|++|++ +|+..+.|+.|.|.++.++..
T Consensus 51 fV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 87 (88)
T 4a8x_A 51 YVEFENPDEAEKALKHMDGGQIDGQEITATAVLAPWP 87 (88)
T ss_dssp EEEESSHHHHHHHHHHHTTCEETTEECEEEEECCCCC
T ss_pred EEEEecHHHHHHHHHHcCCCeECCeEEEEEECCCCCC
Confidence 999999999999999 999999999999999987653
No 212
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=4.5e-15 Score=105.19 Aligned_cols=80 Identities=18% Similarity=0.283 Sum_probs=67.8
Q ss_pred ccceeEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEE
Q psy14193 21 MSKLKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAY 100 (239)
Q Consensus 21 ~~~~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~af 100 (239)
...++|||+.+......+ +|+++|++||+|.+|++ ++++. +.++||||
T Consensus 9 ~~~~~lfV~~Lp~~~te~--------------~L~~~F~~~G~v~~v~i-----------------~~d~~-g~~rG~aF 56 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLD--------------DIKEWLEDKGQVLNIQM-----------------RRTLH-KAFKGSIF 56 (103)
T ss_dssp SGGGCEEEECCCTTCCHH--------------HHHHHHHTSSCEEEEEE-----------------ECCCT-TSCCCEEE
T ss_pred CCCCEEEEECCCCCCCHH--------------HHHHHHhhcCCEEEEEE-----------------EECCC-CCCccEEE
Confidence 456899999876665444 99999999999999984 33444 77889999
Q ss_pred EEeCCHHHHHHHHHhCCCccCCeeEEEeccCC
Q psy14193 101 VRFKNLESVEKALEMNGHVIDEHTIRVDKALT 132 (239)
Q Consensus 101 V~f~~~e~a~~Ai~~~~~~l~g~~i~v~~~~~ 132 (239)
|+|.+.++|++|+++++..+.|+.|.|.++..
T Consensus 57 V~F~~~e~a~~Ai~~~~~~~~gr~l~V~~~~~ 88 (103)
T 1s79_A 57 VVFDSIESAKKFVETPGQKYKETDLLILFKDD 88 (103)
T ss_dssp EEESSHHHHHHHHTSSCCCCTTTTCEEEEHHH
T ss_pred EEECCHHHHHHHHHcCCCEECCEEEEEEEchH
Confidence 99999999999999999999999999987653
No 213
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.56 E-value=3.3e-15 Score=99.50 Aligned_cols=62 Identities=26% Similarity=0.395 Sum_probs=56.2
Q ss_pred HHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEEEeCCHHHHHHHHHhCCCccCCeeEEEecc
Q psy14193 52 SSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKA 130 (239)
Q Consensus 52 ~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV~f~~~e~a~~Ai~~~~~~l~g~~i~v~~~ 130 (239)
++|+++|++||+|.+|+ ++.++.+++++|||||+|.+.++|++|+++++..+.|++|.|.++
T Consensus 14 ~~l~~~F~~~G~i~~v~-----------------i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 14 EDVKHYFEQFGKVDDAM-----------------LMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKA 75 (75)
T ss_dssp HHHHHHHHTTSCCSEEC-----------------CCBCSSSTTSCBEEEEECSCHHHHHHHHSSSCCCSSSCCCEEECC
T ss_pred HHHHHHHHhcCCEEEEE-----------------EEecCCCCCcCcEEEEEECCHHHHHHHHHCCCCEECCEEEEEEeC
Confidence 59999999999999987 345666788999999999999999999999999999999999875
No 214
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=5.2e-15 Score=103.24 Aligned_cols=84 Identities=17% Similarity=0.329 Sum_probs=71.9
Q ss_pred cceeEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccCCceeEE-EEeecccccCCCccceeeecccccCCCCcceEE
Q psy14193 22 SKLKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGEVETV-RFRSVPVADITLPRKACIKMNKVHEKRTNMNAY 100 (239)
Q Consensus 22 ~~~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~I~~v-~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~af 100 (239)
.++.|||+.+...... ++|+++|++||+|.+| + ++.++.++.++||||
T Consensus 4 ~~~~l~V~nLp~~~t~--------------~~l~~~F~~~G~i~~~~~-----------------i~~~~~~g~~~g~af 52 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDE--------------KLLYDTFSAFGVILQTPK-----------------IMRDPDTGNSKGYAF 52 (96)
T ss_dssp CCCEEEEECCCTTCCH--------------HHHHHHHHTTSCBSSCCE-----------------ECCCTTTCSCCSEEE
T ss_pred CCCEEEEeCCCCCCCH--------------HHHHHHHHhcCCeeEEEE-----------------EEEcCCCCCcCeEEE
Confidence 4678899877655444 3999999999999988 6 355667888899999
Q ss_pred EEeCCHHHHHHHHH-hCCCccCCeeEEEeccCCCCCC
Q psy14193 101 VRFKNLESVEKALE-MNGHVIDEHTIRVDKALTTTKS 136 (239)
Q Consensus 101 V~f~~~e~a~~Ai~-~~~~~l~g~~i~v~~~~~~~~~ 136 (239)
|+|.+.++|++|++ +|+..+.|++|.|.++.++...
T Consensus 53 V~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 89 (96)
T 1x5t_A 53 INFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSK 89 (96)
T ss_dssp EEBSSHHHHHHHHHTTTTCEETTEECEEEESCCCCCC
T ss_pred EEECCHHHHHHHHHHcCCCEECCEEEEEEEecccCCC
Confidence 99999999999999 9999999999999999877654
No 215
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.56 E-value=9.4e-15 Score=104.61 Aligned_cols=84 Identities=19% Similarity=0.230 Sum_probs=72.1
Q ss_pred ccceeEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEE
Q psy14193 21 MSKLKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAY 100 (239)
Q Consensus 21 ~~~~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~af 100 (239)
..++.|||+.+......+ +|+++|++||+|.+|+ ++.+..++.++||||
T Consensus 24 ~~~~~l~V~nlp~~~t~~--------------~l~~~F~~~G~i~~v~-----------------i~~~~~~~~~~g~af 72 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQED--------------EIQEKFCDYGEIKNIH-----------------LNLDRRTGFSKGYAL 72 (110)
T ss_dssp TTBEEEEEESCCTTCCHH--------------HHHHHHGGGSCEEEEE-----------------CCBCTTTSSBCSEEE
T ss_pred CCCCEEEEeCCCCCCCHH--------------HHHHHHHhcCCEEEEE-----------------EEecCCCCCcceEEE
Confidence 456789998876654444 9999999999999988 345667788899999
Q ss_pred EEeCCHHHHHHHHH-hCCCccCCeeEEEeccCCCCC
Q psy14193 101 VRFKNLESVEKALE-MNGHVIDEHTIRVDKALTTTK 135 (239)
Q Consensus 101 V~f~~~e~a~~Ai~-~~~~~l~g~~i~v~~~~~~~~ 135 (239)
|+|.+.++|++|++ +|+..+.|+.|.|.++.++..
T Consensus 73 V~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 108 (110)
T 1oo0_B 73 VEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKGP 108 (110)
T ss_dssp EEESSHHHHHHHHHHHTTCEETTEECEEEESEESSC
T ss_pred EEECCHHHHHHHHHHcCCCEECCcEEEEEEcccCCC
Confidence 99999999999999 999999999999999987654
No 216
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=1.1e-14 Score=102.38 Aligned_cols=83 Identities=22% Similarity=0.358 Sum_probs=70.5
Q ss_pred ccceeEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEE
Q psy14193 21 MSKLKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAY 100 (239)
Q Consensus 21 ~~~~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~af 100 (239)
...+.|||+.+......+ +|+++|++||+|.+|++ +.+. ++.++||||
T Consensus 15 ~~~~~l~v~nlp~~~t~~--------------~l~~~F~~~G~i~~v~i-----------------~~~~-~g~~~g~af 62 (100)
T 2do4_A 15 LEKHKLFISGLPFSCTKE--------------ELEEICKAHGTVKDLRL-----------------VTNR-AGKPKGLAY 62 (100)
T ss_dssp CCCSCEEEESCCTTCCHH--------------HHHHHHTTTSCEEEEEE-----------------EECT-TSCEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHH--------------HHHHHHHhCCCeEEEEE-----------------EECC-CCCEEeEEE
Confidence 456789998776554444 99999999999999984 3344 677889999
Q ss_pred EEeCCHHHHHHHHH-hCCCccCCeeEEEeccCCCCC
Q psy14193 101 VRFKNLESVEKALE-MNGHVIDEHTIRVDKALTTTK 135 (239)
Q Consensus 101 V~f~~~e~a~~Ai~-~~~~~l~g~~i~v~~~~~~~~ 135 (239)
|+|.+.++|++|++ +|+..+.|+.|.|.++.++..
T Consensus 63 V~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 98 (100)
T 2do4_A 63 VEYENESQASQAVMKMDGMTIKENIIKVAISNSGPS 98 (100)
T ss_dssp EEESSHHHHHHHHHHHTTEESSSCEEEEEECCCCSC
T ss_pred EEECCHHHHHHHHHHhCCCEECCEEEEEEECCCCCC
Confidence 99999999999998 999999999999999988764
No 217
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=1.2e-14 Score=101.07 Aligned_cols=80 Identities=20% Similarity=0.353 Sum_probs=68.2
Q ss_pred ccceeEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEE
Q psy14193 21 MSKLKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAY 100 (239)
Q Consensus 21 ~~~~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~af 100 (239)
-..+.|||+.+...... ++|+++|++||+|.+|++ +.++.++.++||||
T Consensus 14 ~~~~~l~V~nlp~~~t~--------------~~l~~~f~~~G~v~~v~i-----------------~~~~~~~~~~g~af 62 (94)
T 2e5h_A 14 PSKSTVYVSNLPFSLTN--------------NDLYRIFSKYGKVVKVTI-----------------MKDKDTRKSKGVAF 62 (94)
T ss_dssp CCTTSEEEESCCTTSCH--------------HHHHHHTTTTSCEEEEEE-----------------CCCSSSCCCTTCEE
T ss_pred CCCCEEEEECCCCCCCH--------------HHHHHHHHhcCCeEEEEE-----------------EeCCCCCCcccEEE
Confidence 35678899877655444 499999999999999883 55667788899999
Q ss_pred EEeCCHHHHHHHHH-hCCCccCCeeEEEeccC
Q psy14193 101 VRFKNLESVEKALE-MNGHVIDEHTIRVDKAL 131 (239)
Q Consensus 101 V~f~~~e~a~~Ai~-~~~~~l~g~~i~v~~~~ 131 (239)
|+|.+.++|++|++ +|+..+.|++|.|.+++
T Consensus 63 V~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ak 94 (94)
T 2e5h_A 63 ILFLDKDSAQNCTRAINNKQLFGRVIKASIAI 94 (94)
T ss_dssp EEESCHHHHHHHHHHTTTEEETTEEEEEEECC
T ss_pred EEECCHHHHHHHHHHcCCCeeCCcEEEEEecC
Confidence 99999999999998 99999999999999874
No 218
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.55 E-value=2.6e-15 Score=108.61 Aligned_cols=67 Identities=15% Similarity=0.242 Sum_probs=61.2
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEE
Q psy14193 136 SNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRL 209 (239)
Q Consensus 136 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~ 209 (239)
...++|||+|||+++++++|+++|++||+|..+.++.+ |||||+|.+.++|.+|+..|||..+.++.
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~ 80 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHE 80 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTT
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 34689999999999999999999999999999999765 89999999999999999999999999987
No 219
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.55 E-value=2.9e-14 Score=104.66 Aligned_cols=74 Identities=11% Similarity=0.170 Sum_probs=66.7
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceE-EEEEecChHHHHHHHHHhCCcEeeE--EEEeeCC
Q psy14193 138 SHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGF-GYVNFKAEEEELRKAFESCGEIDNV--RLIRDQH 214 (239)
Q Consensus 138 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~-~fV~F~~~e~a~~a~~~~~g~~~~~--r~l~~~~ 214 (239)
-..|||+||++.+|+++|+++|++||+|.+|.+..+ ++|| |||+|.+.++|..|+..|||..+.+ +.|+++.
T Consensus 28 VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ 102 (130)
T 3zzy_A 28 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDF 102 (130)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEE
T ss_pred eEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEe
Confidence 457889999999999999999999999999988765 3677 9999999999999999999999977 8999876
Q ss_pred CC
Q psy14193 215 TN 216 (239)
Q Consensus 215 ~~ 216 (239)
+.
T Consensus 103 ak 104 (130)
T 3zzy_A 103 SK 104 (130)
T ss_dssp CS
T ss_pred cC
Confidence 63
No 220
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.55 E-value=1.2e-14 Score=104.79 Aligned_cols=85 Identities=19% Similarity=0.377 Sum_probs=72.9
Q ss_pred ccceeEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEE
Q psy14193 21 MSKLKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAY 100 (239)
Q Consensus 21 ~~~~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~af 100 (239)
-..+.|||+.+......+ +|+++|++||.|.+|++ +++..++.++||||
T Consensus 13 ~~~~~l~V~nlp~~~t~~--------------~l~~~F~~~G~i~~v~i-----------------~~~~~~~~~~g~af 61 (115)
T 2dgo_A 13 SNHFHVFVGDLSPEITTE--------------DIKAAFAPFGRISDARV-----------------VKDMATGKSKGYGF 61 (115)
T ss_dssp TTCEEEEEESCCTTCCHH--------------HHHHHHGGGSCEEEEEE-----------------EECTTTCCEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHH--------------HHHHHHHhcCCeEEEEE-----------------EEcCCCCCcceEEE
Confidence 456889998876554443 99999999999999884 55666788899999
Q ss_pred EEeCCHHHHHHHHH-hCCCccCCeeEEEeccCCCCCC
Q psy14193 101 VRFKNLESVEKALE-MNGHVIDEHTIRVDKALTTTKS 136 (239)
Q Consensus 101 V~f~~~e~a~~Ai~-~~~~~l~g~~i~v~~~~~~~~~ 136 (239)
|+|.+.++|++|++ +|+..+.|+.|.|.++.+....
T Consensus 62 V~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 98 (115)
T 2dgo_A 62 VSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPA 98 (115)
T ss_dssp EEESSHHHHHHHHHHTTTCEETTEECEEEESSCCCCC
T ss_pred EEECCHHHHHHHHHHhCCCEECCEEEEEEEccCCCCC
Confidence 99999999999999 9999999999999999877654
No 221
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=5.3e-15 Score=103.27 Aligned_cols=76 Identities=14% Similarity=0.108 Sum_probs=68.3
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEE-EeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeCCC
Q psy14193 137 NSHSIFIGNIPFEAEEEELRKAFESCGEIDNVR-LIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHT 215 (239)
Q Consensus 137 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~-i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~~~ 215 (239)
..++|||+|||+++++++|+++|++||+|..++ ++.++.++ .|||+|.+.++|.+|+..+||..++|+.|+|..+
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~----~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 89 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETA----VVNVTYSSKDQARQALDKLNGFQLENFTLKVAYI 89 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSE----EEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCC----EEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 368999999999999999999999999999994 88775443 4999999999999999999999999999999765
Q ss_pred C
Q psy14193 216 N 216 (239)
Q Consensus 216 ~ 216 (239)
.
T Consensus 90 ~ 90 (96)
T 2e44_A 90 P 90 (96)
T ss_dssp C
T ss_pred C
Confidence 3
No 222
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.54 E-value=1.6e-14 Score=103.47 Aligned_cols=85 Identities=19% Similarity=0.352 Sum_probs=72.8
Q ss_pred ccceeEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEE
Q psy14193 21 MSKLKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAY 100 (239)
Q Consensus 21 ~~~~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~af 100 (239)
-..+.|||+.+......+ +|+++|++||+|.+|+ ++++..++.++||||
T Consensus 13 ~~~~~l~V~nLp~~~t~~--------------~l~~~F~~~G~i~~v~-----------------i~~~~~~g~~~g~af 61 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDSEEE--------------ALGEVLQQFGDLKYVR-----------------VVLHPDTEHSKGCAF 61 (111)
T ss_dssp CCCCCEEEESCCTTCCHH--------------HHHHHHHTTSCEEEEE-----------------CCBCSSSCCBCSEEE
T ss_pred CCCCEEEEECCCCCCCHH--------------HHHHHHHhcCCeEEEE-----------------EEecCCCCCCccEEE
Confidence 356789998776554444 9999999999999988 456677888999999
Q ss_pred EEeCCHHHHHHHHH-hC------CCccCCeeEEEeccCCCCCC
Q psy14193 101 VRFKNLESVEKALE-MN------GHVIDEHTIRVDKALTTTKS 136 (239)
Q Consensus 101 V~f~~~e~a~~Ai~-~~------~~~l~g~~i~v~~~~~~~~~ 136 (239)
|+|.+.++|++|++ +| +..+.|+.|.|.++.++...
T Consensus 62 V~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~l~v~~a~~~~~~ 104 (111)
T 1x4h_A 62 AQFMTQEAAQKCLAAASLEAEGGGLKLDGRQLKVDLAVTRDEA 104 (111)
T ss_dssp EEESSHHHHHHHHHHHCTTTTTCCEESSSCEEEEECCCCCCCC
T ss_pred EEECCHHHHHHHHHHhccccccCCcEEcCEEEEEEECCCCccC
Confidence 99999999999999 99 99999999999999877543
No 223
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.54 E-value=1.1e-14 Score=99.65 Aligned_cols=79 Identities=24% Similarity=0.318 Sum_probs=67.2
Q ss_pred ccceeEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEE
Q psy14193 21 MSKLKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAY 100 (239)
Q Consensus 21 ~~~~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~af 100 (239)
-..+.|||+.+...... ++|+++|++||+|.+|++ +.++.+++++||||
T Consensus 9 ~~~~~l~V~nlp~~~t~--------------~~l~~~F~~~G~i~~v~i-----------------~~~~~~g~~~g~af 57 (87)
T 3s7r_A 9 EDAGKMFVGGLSWDTSK--------------KDLKDYFTKFGEVVDCTI-----------------KMDPNTGRSRGFGF 57 (87)
T ss_dssp SCTTEEEEECCCTTCCH--------------HHHHHHHTTTSCEEEEEE-----------------EECTTTCCEEEEEE
T ss_pred CCCCEEEEeCCCCCCCH--------------HHHHHHHHhCCCEEEEEE-----------------eecCCCCccccEEE
Confidence 35678898877655444 499999999999999984 55667888999999
Q ss_pred EEeCCHHHHHHHHHhCCCccCCeeEEEecc
Q psy14193 101 VRFKNLESVEKALEMNGHVIDEHTIRVDKA 130 (239)
Q Consensus 101 V~f~~~e~a~~Ai~~~~~~l~g~~i~v~~~ 130 (239)
|+|.+.++|++|+++++..+.|+.|.|.++
T Consensus 58 V~f~~~~~a~~A~~~~~~~~~g~~i~v~~A 87 (87)
T 3s7r_A 58 ILFKDAASVEKVLDQKEHRLDGRVIDPKKA 87 (87)
T ss_dssp EEESSTHHHHHHHHSSCEEETTEEEEEEEC
T ss_pred EEECCHHHHHHHHHhCCCEECCEEEEEEeC
Confidence 999999999999998888999999999875
No 224
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.54 E-value=1.8e-14 Score=103.12 Aligned_cols=84 Identities=24% Similarity=0.320 Sum_probs=69.3
Q ss_pred ccceeEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEE
Q psy14193 21 MSKLKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAY 100 (239)
Q Consensus 21 ~~~~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~af 100 (239)
-.++.|||+.+......+ +|+++|++||+|.+|+ ++++..++.++||||
T Consensus 23 ~~~~~lfV~nLp~~~te~--------------~L~~~F~~~G~i~~v~-----------------i~~~~~tg~~kg~af 71 (109)
T 2rs2_A 23 SSGCKMFIGGLSWQTTQE--------------GLREYFGQFGEVKECL-----------------VMRDPLTKRSRGFGF 71 (109)
T ss_dssp ---CCEEEESCCTTCCHH--------------HHHHHHTTTSCEEEEE-----------------ECCCTTTCCCTTCEE
T ss_pred CCCCEEEEeCCCCCCCHH--------------HHHHHHHccCCeEEEE-----------------EEECCCCCCcCcEEE
Confidence 356788888776554444 9999999999999988 355677889999999
Q ss_pred EEeCCHHHHHHHHHhCCCccCCeeEEEeccCCCCC
Q psy14193 101 VRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTK 135 (239)
Q Consensus 101 V~f~~~e~a~~Ai~~~~~~l~g~~i~v~~~~~~~~ 135 (239)
|+|.+.++|++|++..+..+.|+.|.|.++.++..
T Consensus 72 V~f~~~~~A~~Ai~~~~~~l~g~~l~V~~a~~~~~ 106 (109)
T 2rs2_A 72 VTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPRRA 106 (109)
T ss_dssp EEESSHHHHHHHHHSSCEEETTEEEEEEECCCCCC
T ss_pred EEECCHHHHHHHHHHCCCcCCCEEEEEEEccCCCC
Confidence 99999999999999446999999999999987754
No 225
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.54 E-value=9.1e-15 Score=105.55 Aligned_cols=84 Identities=19% Similarity=0.336 Sum_probs=72.2
Q ss_pred cceeEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEE
Q psy14193 22 SKLKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYV 101 (239)
Q Consensus 22 ~~~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV 101 (239)
..+.|||+.+...... ++|+++|++||+|.+|++ +.+..++.++|||||
T Consensus 24 ~~~~l~V~nLp~~~t~--------------~~l~~~F~~~G~i~~v~i-----------------~~~~~~g~~~g~afV 72 (115)
T 2cpz_A 24 EGANLFIYHLPQEFGD--------------QDLLQMFMPFGNVVSAKV-----------------FIDKQTNLSKCFGFV 72 (115)
T ss_dssp TTCCEEEESCCSSCCH--------------HHHHHHHGGGSCCSEEEE-----------------EECSSSCSEEEEEEE
T ss_pred CCcEEEEeCCCCCCCH--------------HHHHHHHHhcCCeEEEEE-----------------EECCCCCCcCccEEE
Confidence 5578999887655444 499999999999999883 556667888999999
Q ss_pred EeCCHHHHHHHHH-hCCCccCCeeEEEeccCCCCCC
Q psy14193 102 RFKNLESVEKALE-MNGHVIDEHTIRVDKALTTTKS 136 (239)
Q Consensus 102 ~f~~~e~a~~Ai~-~~~~~l~g~~i~v~~~~~~~~~ 136 (239)
+|.+.++|++|++ +|+..+.|+.|.|.++.++...
T Consensus 73 ~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 108 (115)
T 2cpz_A 73 SYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSKNDS 108 (115)
T ss_dssp ECSSHHHHHHHHHHHTTCEETTEECEEECCCCSCCC
T ss_pred EECCHHHHHHHHHHcCCCEECCEEEEEEEcCCCCcC
Confidence 9999999999998 9999999999999999877653
No 226
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.54 E-value=1.6e-14 Score=105.55 Aligned_cols=67 Identities=21% Similarity=0.338 Sum_probs=60.4
Q ss_pred HHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEEEeCCHHHHHHHHHhCCCccCCeeEEEeccC
Q psy14193 52 SSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKAL 131 (239)
Q Consensus 52 ~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV~f~~~e~a~~Ai~~~~~~l~g~~i~v~~~~ 131 (239)
++|+++|++||+|.+|++ +.++.++.++|||||+|.+.++|++|+++|+..+.|+.|.|.++.
T Consensus 51 ~~l~~~F~~~G~i~~v~i-----------------~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 51 QDLEAHFSSCGSINRITI-----------------LCDKFSGHPKGYAYIEFAERNSVDAAVAMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHHHHHHHTTSCEEEEEE-----------------EEECTTSSCEEEEEEEESSHHHHHHHHTTTTCEETTEECEEEESS
T ss_pred HHHHHHHHhcCCEEEEEE-----------------EecCCCCCcccEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECC
Confidence 699999999999999883 556678888999999999999999999999999999999999987
Q ss_pred CCCC
Q psy14193 132 TTTK 135 (239)
Q Consensus 132 ~~~~ 135 (239)
+...
T Consensus 114 ~~~~ 117 (124)
T 2jwn_A 114 TNMP 117 (124)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 6543
No 227
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=8.7e-15 Score=103.29 Aligned_cols=86 Identities=24% Similarity=0.441 Sum_probs=72.9
Q ss_pred cccceeEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceE
Q psy14193 20 LMSKLKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNA 99 (239)
Q Consensus 20 ~~~~~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~a 99 (239)
.-..+.|||+.+......+ +|+++|++||+|.+|++ +.+..++.++|||
T Consensus 9 ~~~~~~l~v~nLp~~~t~~--------------~l~~~f~~~G~i~~v~i-----------------~~~~~~~~~~g~a 57 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQ--------------SLEQVFSKYGQISEVVV-----------------VKDRETQRSRGFG 57 (102)
T ss_dssp CCCCSEEEEESCCTTCCHH--------------HHHHHHHHHSCCCEEEE-----------------CCCSSSCSCCSEE
T ss_pred CCCCCEEEEECCCCCCCHH--------------HHHHHHHhcCCeEEEEE-----------------EeCCCCCCcccEE
Confidence 3456889998876554444 99999999999999883 4566678889999
Q ss_pred EEEeCCHHHHHHHHH-hCCCccCCeeEEEeccCCCCCC
Q psy14193 100 YVRFKNLESVEKALE-MNGHVIDEHTIRVDKALTTTKS 136 (239)
Q Consensus 100 fV~f~~~e~a~~Ai~-~~~~~l~g~~i~v~~~~~~~~~ 136 (239)
||+|.+.++|++|++ +|+..+.|++|.|.++.+....
T Consensus 58 fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 95 (102)
T 1x5s_A 58 FVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAGKSSDN 95 (102)
T ss_dssp EEECSSHHHHHHHHHHHTTCCTTSCCCEEEEEECCCCC
T ss_pred EEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCCC
Confidence 999999999999998 9999999999999999876543
No 228
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.54 E-value=1.5e-14 Score=106.74 Aligned_cols=82 Identities=23% Similarity=0.340 Sum_probs=68.7
Q ss_pred ceeEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEEE
Q psy14193 23 KLKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVR 102 (239)
Q Consensus 23 ~~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV~ 102 (239)
.+.|||+.+...... ++|+++|++||+|.+|++ ++++.++.++|||||+
T Consensus 46 ~~~l~V~nLp~~~te--------------~~L~~~F~~~G~I~~v~i-----------------~~d~~tg~~~G~afV~ 94 (129)
T 2kxn_B 46 NCCLGVFGLSLYTTE--------------RDLREVFSKYGPIADVSI-----------------VYDQQSRRSRGFAFVY 94 (129)
T ss_dssp SSCBCEETCTTSCCH--------------HHHHHHHTTTSCEEEEEE-----------------ECCSSSSCCCCEEEEE
T ss_pred CCEEEEeCCCCCCCH--------------HHHHHHHHhcCCeEEEEE-----------------EecCCCCccceEEEEE
Confidence 456666665444333 599999999999999883 5566788899999999
Q ss_pred eCCHHHHHHHHH-hCCCccCCeeEEEeccCCCCC
Q psy14193 103 FKNLESVEKALE-MNGHVIDEHTIRVDKALTTTK 135 (239)
Q Consensus 103 f~~~e~a~~Ai~-~~~~~l~g~~i~v~~~~~~~~ 135 (239)
|.+.++|++|++ +|+..+.|++|.|.++.++..
T Consensus 95 F~~~~~A~~Ai~~lng~~i~g~~l~V~~a~~~~p 128 (129)
T 2kxn_B 95 FENVDDAKEAKERANGMELDGRRIRVDFSITKRP 128 (129)
T ss_dssp ESCHHHHHHHHHHHTTCCSSSSCCEESCCSSSSC
T ss_pred ECCHHHHHHHHHHhCCCEECCEEEEEEEecCCCC
Confidence 999999999999 999999999999999987653
No 229
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.54 E-value=2.7e-15 Score=105.83 Aligned_cols=74 Identities=23% Similarity=0.406 Sum_probs=63.8
Q ss_pred HHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEEEeCCHHHHHHHHH-hCCCccCCeeEEEecc
Q psy14193 52 SSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALE-MNGHVIDEHTIRVDKA 130 (239)
Q Consensus 52 ~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV~f~~~e~a~~Ai~-~~~~~l~g~~i~v~~~ 130 (239)
++|+++|++||+|.+|++. .+ ++|||||+|.+.++|++|++ +++..+.|+.|.|.++
T Consensus 15 ~~l~~~F~~~G~i~~v~i~-----------------~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 72 (101)
T 2hvz_A 15 GELERAFSYYGPLRTVWIA-----------------RN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELS 72 (101)
T ss_dssp HHHHHHHHHHCCCSEEEEE-----------------SS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEES
T ss_pred HHHHHHHHhcCCeEEEEEe-----------------eC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEc
Confidence 4999999999999999851 11 57999999999999999999 9999999999999999
Q ss_pred CCCCCCC-----------CcEEEEcCCC
Q psy14193 131 LTTTKSN-----------SHSIFIGNIP 147 (239)
Q Consensus 131 ~~~~~~~-----------~~~l~V~nLp 147 (239)
.+..... ..++||+||+
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~ifvg~L~ 100 (101)
T 2hvz_A 73 TGMPRRSRFDRPPARRKLLEVLFNGPLE 100 (101)
T ss_dssp SSCCCSSCCCSCCCSCCCCSCCCSCCCC
T ss_pred cCCCCcccCCCCCccccCCCceecCCCC
Confidence 7665321 6789999987
No 230
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.53 E-value=2.2e-14 Score=102.97 Aligned_cols=86 Identities=22% Similarity=0.308 Sum_probs=71.2
Q ss_pred cccccceeEEeehhhHhhhhhcCCCcchhhchhHHHHH---HhcccCCceeEEEEeecccccCCCccceeeeccccc---
Q psy14193 18 RNLMSKLKVFLNIWKMALKLKMNPSLTKSKNHALSSVT---SMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVH--- 91 (239)
Q Consensus 18 ~~~~~~~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~---~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~--- 91 (239)
...+....|||+.+......+ +|+ ++|++||+|.+|++ +.+..
T Consensus 10 ~r~~~~~~l~V~nLp~~~~~~--------------~l~~~~~~F~~~G~i~~v~i-----------------~~~~~~~~ 58 (111)
T 2cpi_A 10 VRVVQKNLVFVVGLSQRLADP--------------EVLKRPEYFGKFGKIHKVVI-----------------NNSTSYAG 58 (111)
T ss_dssp CCCCCSSCEEEEEECTTTCCH--------------HHHHSTTTTTTTSCEEEEEE-----------------ECCSSCCS
T ss_pred ccccCCCEEEEECCCCCCCHH--------------HHHHHHHHhhccCCEEEEEE-----------------ecCCCcCc
Confidence 345567899999887665544 899 99999999999984 22333
Q ss_pred CCCCcceEEEEeCCHHHHHHHHH-hCCCccCCeeEEEeccCCCC
Q psy14193 92 EKRTNMNAYVRFKNLESVEKALE-MNGHVIDEHTIRVDKALTTT 134 (239)
Q Consensus 92 t~~~~G~afV~f~~~e~a~~Ai~-~~~~~l~g~~i~v~~~~~~~ 134 (239)
+++++|||||+|.+.++|++|++ ||+..+.|++|.|.++.++.
T Consensus 59 ~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~a~~k~ 102 (111)
T 2cpi_A 59 SQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTLKASLGTTKY 102 (111)
T ss_dssp SSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEESCCCCS
T ss_pred cCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEEEEEEeccccc
Confidence 34567999999999999999999 99999999999999998775
No 231
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.53 E-value=2.2e-14 Score=102.02 Aligned_cols=86 Identities=15% Similarity=0.258 Sum_probs=72.3
Q ss_pred cccceeEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccCCceeEEEEeecccccCCCccceeeeccc-ccCCCCcce
Q psy14193 20 LMSKLKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNK-VHEKRTNMN 98 (239)
Q Consensus 20 ~~~~~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~-~~t~~~~G~ 98 (239)
....+.|||+.+......+ +|+++|++||+|.+|++ +.+ ..++.++||
T Consensus 12 ~~~~~~l~V~nlp~~~t~~--------------~l~~~F~~~G~i~~v~i-----------------~~~~~~~~~~~g~ 60 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQR--------------EIRELFSTFGELKTVRL-----------------PKKMTGTGAHRGF 60 (107)
T ss_dssp SSCCCCEEEESCCTTCCHH--------------HHHHHHHTTSCEEEEEC-----------------CCCCSSSCSSCSE
T ss_pred CCCCCEEEEeCCCCcCCHH--------------HHHHHHHccCCeEEEEE-----------------ecCCCCCCCcCce
Confidence 3456789998776554444 99999999999999983 445 567888999
Q ss_pred EEEEeCCHHHHHHHHH-h-CCCccCCeeEEEeccCCCCCC
Q psy14193 99 AYVRFKNLESVEKALE-M-NGHVIDEHTIRVDKALTTTKS 136 (239)
Q Consensus 99 afV~f~~~e~a~~Ai~-~-~~~~l~g~~i~v~~~~~~~~~ 136 (239)
|||+|.+.++|++|++ + |+..+.|+.|.|.++.+....
T Consensus 61 afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v~~a~~~~~~ 100 (107)
T 2cph_A 61 GFVDFITKQDAKKAFNALCHSTHLYGRRLVLEWADSEVTV 100 (107)
T ss_dssp EEEEESSHHHHHHHHHHHHTCCBSSSCBCEEEECCCCCCC
T ss_pred EEEEECCHHHHHHHHHHhccCCeECCCEEEEEeCCCCCCC
Confidence 9999999999999999 9 999999999999999877643
No 232
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=1.3e-14 Score=100.91 Aligned_cols=80 Identities=21% Similarity=0.316 Sum_probs=68.2
Q ss_pred cceeEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEE
Q psy14193 22 SKLKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYV 101 (239)
Q Consensus 22 ~~~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV 101 (239)
..+.|||+.+...... ++|+++|++||+|.+|++ +.++.++.++|||||
T Consensus 14 ~~~~l~v~nlp~~~t~--------------~~l~~~f~~~G~v~~v~i-----------------~~~~~~~~~~g~afV 62 (95)
T 2cqc_A 14 PNCCLGVFGLSLYTTE--------------RDLREVFSKYGPIADVSI-----------------VYDQQSRRSRGFAFV 62 (95)
T ss_dssp GGGCEEEESCCSSCCH--------------HHHHHHHHTTSCEEEEEE-----------------EECSSSSSEEEEEEE
T ss_pred CCCEEEEECCCCCCCH--------------HHHHHHHHhcCCeeEEEE-----------------EEcCCCCCcccEEEE
Confidence 4577888876554333 499999999999999883 556677888999999
Q ss_pred EeCCHHHHHHHHH-hCCCccCCeeEEEeccCC
Q psy14193 102 RFKNLESVEKALE-MNGHVIDEHTIRVDKALT 132 (239)
Q Consensus 102 ~f~~~e~a~~Ai~-~~~~~l~g~~i~v~~~~~ 132 (239)
+|.+.++|++|++ +|+..+.|++|.|.++..
T Consensus 63 ~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 94 (95)
T 2cqc_A 63 YFENVDDAKEAKERANGMELDGRRIRVSGPSS 94 (95)
T ss_dssp EESSHHHHHHHHHHHTTEEETTEEEEEECCSC
T ss_pred EECCHHHHHHHHHHhCCCEECCEEEEEEecCC
Confidence 9999999999999 999999999999999864
No 233
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.53 E-value=1.2e-14 Score=101.82 Aligned_cols=84 Identities=20% Similarity=0.360 Sum_probs=69.9
Q ss_pred cceeEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccCCceeEEEEeecccccCCCccceeeeccccc---CCCCcce
Q psy14193 22 SKLKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVH---EKRTNMN 98 (239)
Q Consensus 22 ~~~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~---t~~~~G~ 98 (239)
..+.|||+++......+ +|+++|++||+|.+|++ ..+.. |+.++||
T Consensus 4 ~~~~l~V~nLp~~~t~~--------------~l~~~F~~~G~i~~v~i-----------------~~~~~~~gt~~~~g~ 52 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEE--------------TLKGVFSKVGAIKSCTI-----------------SKKKNKAGVLLSMGF 52 (98)
T ss_dssp CCCCEEEESCCTTCCHH--------------HHHHHHHTTSCEEEEEE-----------------EEEECTTCCEEEEEE
T ss_pred CCCEEEEeCCCCCCCHH--------------HHHHHHHhcCCeEEEEE-----------------EecCCCCCCcCcccE
Confidence 45788888776554444 99999999999999984 33333 5578899
Q ss_pred EEEEeCCHHHHHHHHH-hCCCccCCeeEEEeccCCCCCC
Q psy14193 99 AYVRFKNLESVEKALE-MNGHVIDEHTIRVDKALTTTKS 136 (239)
Q Consensus 99 afV~f~~~e~a~~Ai~-~~~~~l~g~~i~v~~~~~~~~~ 136 (239)
|||+|.+.++|++|++ +|+..+.|+.|.|.++.+....
T Consensus 53 afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 91 (98)
T 2cpf_A 53 GFVEYKKPEQAQKALKQLQGHTVDGHKLEVRISERATKP 91 (98)
T ss_dssp EEEEESSHHHHHHHHHHSTTCEETTEECEEECSSCSSCC
T ss_pred EEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEccCCCCC
Confidence 9999999999999999 9999999999999999877543
No 234
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.53 E-value=1.2e-14 Score=98.76 Aligned_cols=72 Identities=14% Similarity=0.138 Sum_probs=61.9
Q ss_pred cceeEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEE
Q psy14193 22 SKLKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYV 101 (239)
Q Consensus 22 ~~~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV 101 (239)
..--|+|+++..+...+ +|+++|.+||+|.++++ ..++|||||
T Consensus 6 ~~~wL~VgNL~~~~te~--------------~L~~lF~q~G~V~~~~l-----------------------~~~kGfaFV 48 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGP--------------TLRTLCMQHGPLVSFHP-----------------------YLNQGIALC 48 (89)
T ss_dssp CCCEEEEECCCTTCCCH--------------HHHHHHHHHSCEEEEEE-----------------------ETTTTEEEE
T ss_pred ccceEEEeCCCccCCHH--------------HHHHHHHhhCCEEEEEE-----------------------cCCCcEEEE
Confidence 44567888776665544 99999999999999985 125799999
Q ss_pred EeCCHHHHHHHHH-hCCCccCCeeEEEecc
Q psy14193 102 RFKNLESVEKALE-MNGHVIDEHTIRVDKA 130 (239)
Q Consensus 102 ~f~~~e~a~~Ai~-~~~~~l~g~~i~v~~~ 130 (239)
+|.++++|++|++ ||+..+.|++|+|..+
T Consensus 49 ey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 49 KYTTREEANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp EESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred EECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence 9999999999999 9999999999999877
No 235
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=2.8e-14 Score=100.90 Aligned_cols=83 Identities=18% Similarity=0.366 Sum_probs=70.5
Q ss_pred ccceeEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEE
Q psy14193 21 MSKLKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAY 100 (239)
Q Consensus 21 ~~~~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~af 100 (239)
...+.|||+++......+ +|+++|++||+|.+|++ ..+ ++.++||||
T Consensus 13 ~~~~~l~V~nlp~~~t~~--------------~l~~~F~~~G~i~~v~i-----------------~~~--~g~~~g~af 59 (103)
T 2d9p_A 13 YQVVNLYVKNLDDGIDDE--------------RLRKAFSPFGTITSAKV-----------------MME--GGRSKGFGF 59 (103)
T ss_dssp SSCCCEEEECCCTTCCHH--------------HHHHTTTTTSCEEEEEE-----------------EEC--SSSEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHH--------------HHHHHHHhcCCEEEEEE-----------------EcC--CCCcCEEEE
Confidence 367889998776554444 99999999999999984 223 667789999
Q ss_pred EEeCCHHHHHHHHH-hCCCccCCeeEEEeccCCCCCC
Q psy14193 101 VRFKNLESVEKALE-MNGHVIDEHTIRVDKALTTTKS 136 (239)
Q Consensus 101 V~f~~~e~a~~Ai~-~~~~~l~g~~i~v~~~~~~~~~ 136 (239)
|+|.+.++|++|++ +|+..+.|+.|.|.++.++..+
T Consensus 60 V~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 96 (103)
T 2d9p_A 60 VCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEER 96 (103)
T ss_dssp EEESSHHHHHHHHHHHTTCBSSSSBCEEEECSSCCCC
T ss_pred EEECCHHHHHHHHHHhCCCEeCCcEEEEEEecccccC
Confidence 99999999999999 9999999999999999887654
No 236
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.52 E-value=1.6e-14 Score=102.65 Aligned_cols=85 Identities=16% Similarity=0.266 Sum_probs=72.6
Q ss_pred ccceeEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEE
Q psy14193 21 MSKLKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAY 100 (239)
Q Consensus 21 ~~~~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~af 100 (239)
...+.|||+.+......+ +|+++|++||+|.+|+ ++.+..++.++||||
T Consensus 11 ~~~~~l~V~nlp~~~t~~--------------~l~~~F~~~G~i~~v~-----------------i~~~~~~g~~~g~af 59 (106)
T 2dgp_A 11 HDAIKLFIGQIPRNLDEK--------------DLKPLFEEFGKIYELT-----------------VLKDRFTGMHKGCAF 59 (106)
T ss_dssp TTCEEEEEESCCTTCCHH--------------HHHHHHHHHSCCCEEE-----------------CCCCSSSCSCCSEEE
T ss_pred CCCCEEEEeCCCCCCCHH--------------HHHHHHHhcCCeeEEE-----------------EEecCCCCCcceEEE
Confidence 456889998876554444 9999999999999988 455677888999999
Q ss_pred EEeCCHHHHHHHHH-hCCCcc---CCeeEEEeccCCCCCC
Q psy14193 101 VRFKNLESVEKALE-MNGHVI---DEHTIRVDKALTTTKS 136 (239)
Q Consensus 101 V~f~~~e~a~~Ai~-~~~~~l---~g~~i~v~~~~~~~~~ 136 (239)
|+|.+.++|++|++ +|+..+ .|++|.|.++.+....
T Consensus 60 V~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~~~~~~ 99 (106)
T 2dgp_A 60 LTYCERESALKAQSALHEQKTLPGMNRPIQVKPADSESRG 99 (106)
T ss_dssp EEESSHHHHHHHHHHHTTTCCCTTCSSCCEEEECCCCSCC
T ss_pred EEECCHHHHHHHHHHhcCCcccCCCCceEEEEECCccccc
Confidence 99999999999999 999988 8999999999877643
No 237
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.52 E-value=9.9e-15 Score=111.16 Aligned_cols=81 Identities=17% Similarity=0.241 Sum_probs=69.1
Q ss_pred cceeEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccCC--ceeEEEEeecccccCCCccceeeecccccCCCCcceE
Q psy14193 22 SKLKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYG--EVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNA 99 (239)
Q Consensus 22 ~~~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G--~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~a 99 (239)
....|||+++...... ++|+++|++|| .|.+|+ ++.|..+++++|||
T Consensus 54 ~~~~lfVgnLp~~~te--------------~~L~~~F~~~G~i~v~~v~-----------------i~~d~~tg~skGfa 102 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTD--------------QQLIQVIRSIGVYDVVELK-----------------FAENRANGQSKGYA 102 (156)
T ss_dssp --CEEEEECCCTTCCH--------------HHHHHHHHHTTCCCEEEEE-----------------EEECTTTCCEEEEE
T ss_pred CCCEEEEeCCCCCCCH--------------HHHHHHHHHHCCccEEEEE-----------------EEecCCCCccceEE
Confidence 3468888877655444 49999999999 899988 46677889999999
Q ss_pred EEEeCCHHHHHHHHH-hCCCccCCeeEEEeccCCC
Q psy14193 100 YVRFKNLESVEKALE-MNGHVIDEHTIRVDKALTT 133 (239)
Q Consensus 100 fV~f~~~e~a~~Ai~-~~~~~l~g~~i~v~~~~~~ 133 (239)
||+|.+.++|++|++ +|+..+.|+.|.|.++.+.
T Consensus 103 FV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~a~~~ 137 (156)
T 3n9u_C 103 EVVVASENSVHKLLELLPGKVLNGEKVDVRPATRQ 137 (156)
T ss_dssp EEEESCHHHHHHHHHHSTTCEETTEECEEEECCHH
T ss_pred EEEECCHHHHHHHHHHcCCCEECCeEeEEEEcCCC
Confidence 999999999999999 9999999999999998754
No 238
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.52 E-value=2.9e-14 Score=101.13 Aligned_cols=83 Identities=18% Similarity=0.340 Sum_probs=69.7
Q ss_pred cceeEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEE
Q psy14193 22 SKLKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYV 101 (239)
Q Consensus 22 ~~~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV 101 (239)
..+.|||+.+......+ +|+++|++||+|.+|++ +.+. ++.++|||||
T Consensus 14 ~~~~l~v~nLp~~~t~~--------------~l~~~F~~~G~i~~v~i-----------------~~~~-~g~~~g~afV 61 (105)
T 2dnh_A 14 RDRKLFVGMLNKQQSEE--------------DVLRLFQPFGVIDECTV-----------------LRGP-DGSSKGCAFV 61 (105)
T ss_dssp CCCEEEEESCCTTCCHH--------------HHHHHHTTTSCEEEEEE-----------------EECS-SSCEEEEEEE
T ss_pred CCCEEEEeCCCCCCCHH--------------HHHHHHHhcCCeEEEEE-----------------EECC-CCCcCcEEEE
Confidence 46889998876554443 99999999999999984 3333 5677899999
Q ss_pred EeCCHHHHHHHHH-hCCCccCC---eeEEEeccCCCCCC
Q psy14193 102 RFKNLESVEKALE-MNGHVIDE---HTIRVDKALTTTKS 136 (239)
Q Consensus 102 ~f~~~e~a~~Ai~-~~~~~l~g---~~i~v~~~~~~~~~ 136 (239)
+|.+.++|++|++ +|+..+.| ++|.|.++.+...+
T Consensus 62 ~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~~a~~~~~~ 100 (105)
T 2dnh_A 62 KFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKES 100 (105)
T ss_dssp EESSHHHHHHHHHHHSSCCCCTTCSSCCEEEESCSSCCC
T ss_pred EeCCHHHHHHHHHHHcCCccCCCCCccEEEEECccCccc
Confidence 9999999999999 99999988 99999999887654
No 239
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.52 E-value=2.2e-14 Score=103.80 Aligned_cols=82 Identities=20% Similarity=0.320 Sum_probs=69.7
Q ss_pred cceeEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEE
Q psy14193 22 SKLKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYV 101 (239)
Q Consensus 22 ~~~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV 101 (239)
..+.|||+.+......+ +|+++|++||+|.+|.+ +.+. ++.++|||||
T Consensus 6 ~~~~l~V~nLp~~~t~~--------------~l~~~F~~~G~i~~v~i-----------------~~~~-~g~~~g~afV 53 (116)
T 2fy1_A 6 HPGKLFIGGLNRETNEK--------------MLKAVFGKHGPISEVLL-----------------IKDR-TSKSRGFAFI 53 (116)
T ss_dssp SCCEEEEECCTTTCCHH--------------HHHHHHHTSSCCSEEEE-----------------ECST-TTTCCCEEEE
T ss_pred CCCEEEEeCCCCCCCHH--------------HHHHHHHhcCCEEEEEE-----------------EECC-CCCcccEEEE
Confidence 45789998876654444 99999999999999984 3344 6788899999
Q ss_pred EeCCHHHHHHHHH-hCCCccCCeeEEEeccCCCCC
Q psy14193 102 RFKNLESVEKALE-MNGHVIDEHTIRVDKALTTTK 135 (239)
Q Consensus 102 ~f~~~e~a~~Ai~-~~~~~l~g~~i~v~~~~~~~~ 135 (239)
+|.+.++|++|++ +|+..+.|+.|.|.++.+...
T Consensus 54 ~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 88 (116)
T 2fy1_A 54 TFENPADAKNAAKDMNGKSLHGKAIKVEQAKKPSF 88 (116)
T ss_dssp ECSSHHHHHHHHHHCSSCBCSSSBCEEEECCCSSC
T ss_pred EECCHHHHHHHHHHhCCCEECCEEEEEEECCCCCC
Confidence 9999999999999 999999999999999986654
No 240
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.52 E-value=1.8e-14 Score=109.63 Aligned_cols=74 Identities=9% Similarity=0.095 Sum_probs=66.4
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeE--EEEeeCCC
Q psy14193 138 SHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNV--RLIRDQHT 215 (239)
Q Consensus 138 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~--r~l~~~~~ 215 (239)
..+|||+|||+.+|+++|+++|++||+|.++.+..+ .++|||||+|.+.++|.+|+..|||..+.+ +.|++.++
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~A 121 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 121 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES----SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEEC
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEe
Confidence 567999999999999999999999999999998654 257999999999999999999999999954 88888755
No 241
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.52 E-value=1.9e-14 Score=101.05 Aligned_cols=80 Identities=20% Similarity=0.307 Sum_probs=68.5
Q ss_pred ccceeEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccCCceeE--------EEEeecccccCCCccceeeecccccC
Q psy14193 21 MSKLKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGEVET--------VRFRSVPVADITLPRKACIKMNKVHE 92 (239)
Q Consensus 21 ~~~~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~I~~--------v~l~~~~~~~~~~~~~~~~~~~~~~t 92 (239)
.....|||+.+......+ +|+++|++||.|.+ |+ ++.+..+
T Consensus 11 ~~~~~l~V~nLp~~~t~~--------------~l~~~F~~~G~i~~~~~~~~~~v~-----------------i~~~~~~ 59 (99)
T 2la6_A 11 SDNNTIFVQGLGENVTIE--------------SVADYFKQIGIIKTNKKTGQPMIN-----------------LYTDRET 59 (99)
T ss_dssp CCCSEEEEECCCSSCCHH--------------HHHHHHTTTSCBCEETTTTEESEE-----------------EEECTTT
T ss_pred CCCCEEEEeCCCCCCCHH--------------HHHHHHHHhCCEeeccccccccEE-----------------EEecCCC
Confidence 356788998776554444 99999999999998 77 4556778
Q ss_pred CCCcceEEEEeCCHHHHHHHHH-hCCCccCCeeEEEeccC
Q psy14193 93 KRTNMNAYVRFKNLESVEKALE-MNGHVIDEHTIRVDKAL 131 (239)
Q Consensus 93 ~~~~G~afV~f~~~e~a~~Ai~-~~~~~l~g~~i~v~~~~ 131 (239)
++++|||||+|.+.++|++|++ +|+..+.|+.|.|.++.
T Consensus 60 g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~A~ 99 (99)
T 2la6_A 60 GKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFAT 99 (99)
T ss_dssp CSEEEEEEEEBSSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred CCeeeEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEecC
Confidence 8899999999999999999999 99999999999999863
No 242
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.52 E-value=1.8e-14 Score=101.52 Aligned_cols=83 Identities=23% Similarity=0.352 Sum_probs=67.8
Q ss_pred cccceeEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccCCceeEEEEeecccccCCCccceeeecccc-cCCCCcce
Q psy14193 20 LMSKLKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKV-HEKRTNMN 98 (239)
Q Consensus 20 ~~~~~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~-~t~~~~G~ 98 (239)
....+.|||+++......+ +|+++|++|| |.+|++ +++. .+++++||
T Consensus 16 ~~~~~~l~V~nLp~~~t~~--------------~l~~~F~~~G-i~~v~i-----------------~~~~~~~g~~~g~ 63 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEE--------------SIKEFFRGLN-ISAVRL-----------------PREPSNPERLKGF 63 (100)
T ss_dssp ----CEEEESCCSSCCSSS--------------HHHHHSCSSC-EEEEEC-----------------SCCTTTTCCCCSC
T ss_pred CCCCcEEEEeCCCCCCCHH--------------HHHHHHHhcC-CeEEEE-----------------EecCCcCCccCeE
Confidence 3457889998776554443 9999999999 999883 4455 57888999
Q ss_pred EEEEeCCHHHHHHHHHhCCCccCCeeEEEeccCCCC
Q psy14193 99 AYVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTT 134 (239)
Q Consensus 99 afV~f~~~e~a~~Ai~~~~~~l~g~~i~v~~~~~~~ 134 (239)
|||+|.+.++|++|+.+++..+.|+.|.|.++.+..
T Consensus 64 afV~f~~~~~a~~Ai~l~g~~~~g~~l~V~~a~~~~ 99 (100)
T 2j76_E 64 GYAEFEDLDSLLSALSLNEESLGNRRIRVDVADQAQ 99 (100)
T ss_dssp EEEEECCHHHHHHHHHTTTCCBTTBCCCCEECCCSC
T ss_pred EEEEECCHHHHHHHHhcCCCEECCeEEEEEeccCCC
Confidence 999999999999999999999999999999998764
No 243
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=1.3e-14 Score=102.68 Aligned_cols=81 Identities=17% Similarity=0.317 Sum_probs=69.3
Q ss_pred ceeEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEEE
Q psy14193 23 KLKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVR 102 (239)
Q Consensus 23 ~~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV~ 102 (239)
.+.|||+++...... ++|+++|++||+|.+|++ +.+..++.++|||||+
T Consensus 8 ~~~l~V~nlp~~~~~--------------~~l~~~f~~~G~i~~~~i-----------------~~~~~~g~~~g~afV~ 56 (104)
T 1p1t_A 8 LRSVFVGNIPYEATE--------------EQLKDIFSEVGPVVSFRL-----------------VYDRETGKPKGYGFCE 56 (104)
T ss_dssp HSCEEEESCCTTSCH--------------HHHHHHHHTTSCCSEEEE-----------------EEETTTTEEEEEEEEE
T ss_pred ccEEEEeCCCCcCCH--------------HHHHHHHHhcCCeeEEEE-----------------EeCCCCCccceEEEEE
Confidence 467888876655443 499999999999999884 4566678889999999
Q ss_pred eCCHHHHHHHHH-hCCCccCCeeEEEeccCCCC
Q psy14193 103 FKNLESVEKALE-MNGHVIDEHTIRVDKALTTT 134 (239)
Q Consensus 103 f~~~e~a~~Ai~-~~~~~l~g~~i~v~~~~~~~ 134 (239)
|.+.++|++|++ +|+..+.|+.|.|.++.+..
T Consensus 57 f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 89 (104)
T 1p1t_A 57 YQDQETALSAMRNLNGREFSGRALRVDNAASEK 89 (104)
T ss_dssp CSCHHHHHHHHHHSSSBSCSSSCBEEEETTCTT
T ss_pred ECCHHHHHHHHHHhCCCeeCCcEEEEEeCCCcc
Confidence 999999999999 99999999999999998764
No 244
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=9.4e-15 Score=99.64 Aligned_cols=79 Identities=9% Similarity=0.230 Sum_probs=67.2
Q ss_pred cceeEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEE
Q psy14193 22 SKLKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYV 101 (239)
Q Consensus 22 ~~~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV 101 (239)
.++.|||+++...... ++|+++|++||+|.+|++ +.++.++.++|||||
T Consensus 4 ~~~~l~v~nlp~~~t~--------------~~l~~~f~~~G~i~~~~i-----------------~~~~~~~~~~g~afV 52 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTD--------------QDLVKLCQPYGKIVSTKA-----------------ILDKTTNKCKGYGFV 52 (85)
T ss_dssp CCCEEEEESCCTTCCH--------------HHHHTTSTTTSCEEEEEE-----------------ECCSSSCSCCSEEEE
T ss_pred CCcEEEEeCCCCCCCH--------------HHHHHHHHhcCCeEEEEE-----------------EecCCCCCcCcEEEE
Confidence 3578888877555444 399999999999999883 456677888999999
Q ss_pred EeCCHHHHHHHHH-hCCCccCCeeEEEeccC
Q psy14193 102 RFKNLESVEKALE-MNGHVIDEHTIRVDKAL 131 (239)
Q Consensus 102 ~f~~~e~a~~Ai~-~~~~~l~g~~i~v~~~~ 131 (239)
+|.+.++|++|++ +|+..+.|+.+++.++.
T Consensus 53 ~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~~ 83 (85)
T 1x4e_A 53 DFDSPSAAQKAVTALKASGVQAQMAKQSGPS 83 (85)
T ss_dssp EESCHHHHHHHHHHHHHHTCCEESCCSSCCC
T ss_pred EECCHHHHHHHHHHhcCCeEeeEEEeecCCC
Confidence 9999999999999 99999999999988764
No 245
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=3.3e-14 Score=99.35 Aligned_cols=82 Identities=20% Similarity=0.210 Sum_probs=68.3
Q ss_pred cccceeEEeehhhHhhhhhcCCCcchhhchhHHHHH----HhcccCCceeEEEEeecccccCCCccceeeecccccCCCC
Q psy14193 20 LMSKLKVFLNIWKMALKLKMNPSLTKSKNHALSSVT----SMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRT 95 (239)
Q Consensus 20 ~~~~~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~----~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~ 95 (239)
.-++.+|||+++......+ +|+ ++|++||+|.+|++ +.+..+
T Consensus 6 ~~~~~~l~V~nL~~~~~~~--------------~l~~~l~~~F~~~G~v~~v~i-----------------~~~~~~--- 51 (96)
T 2dgx_A 6 SGNGADVQVSNIDYRLSRK--------------ELQQLLQEAFARHGKVKSVEL-----------------SPHTDY--- 51 (96)
T ss_dssp CSSCEEEEEESCCTTSCHH--------------HHHHHHHHHHHHHSCEEEEEE-----------------CSCCST---
T ss_pred CCCCCEEEEECCCCCCCHH--------------HHHHHHHHhccccCcEEEEEE-----------------EeCCCC---
Confidence 4467899999876664444 787 99999999999984 233333
Q ss_pred cceEEEEeCCHHHHHHHHH-hCCCccCCeeEEEeccCCCCC
Q psy14193 96 NMNAYVRFKNLESVEKALE-MNGHVIDEHTIRVDKALTTTK 135 (239)
Q Consensus 96 ~G~afV~f~~~e~a~~Ai~-~~~~~l~g~~i~v~~~~~~~~ 135 (239)
+|||||+|.+.++|++|++ +|+..+.|++|.|.++.+...
T Consensus 52 rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~a~~~~~ 92 (96)
T 2dgx_A 52 QLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSLATGASG 92 (96)
T ss_dssp TCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCSSC
T ss_pred CeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCCCCC
Confidence 6899999999999999999 999999999999999987654
No 246
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.51 E-value=2e-14 Score=104.17 Aligned_cols=79 Identities=19% Similarity=0.357 Sum_probs=66.9
Q ss_pred cceeEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEE
Q psy14193 22 SKLKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYV 101 (239)
Q Consensus 22 ~~~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV 101 (239)
..+.|||+++...... ++|+++|++||+|.+|++ +.+..++.++|||||
T Consensus 39 ~~~~l~V~nlp~~~t~--------------~~l~~~F~~~G~i~~~~i-----------------~~~~~~g~~~g~afV 87 (118)
T 2khc_A 39 EGCNLFIYHLPQEFTD--------------TDLASTFLPFGNVISAKV-----------------FIDKQTSLSKCFGFV 87 (118)
T ss_dssp CSEEEEEECSCTTCCH--------------HHHHHHTTTSCEEEEEEE-----------------CCCSSSSCCCCEEEE
T ss_pred CCCEEEEeCCCCCCCH--------------HHHHHHHHhcCCEEEEEE-----------------EeCCCCCCcCcEEEE
Confidence 4577888876555443 499999999999999883 556677888999999
Q ss_pred EeCCHHHHHHHHH-hCCCccCCeeEEEeccC
Q psy14193 102 RFKNLESVEKALE-MNGHVIDEHTIRVDKAL 131 (239)
Q Consensus 102 ~f~~~e~a~~Ai~-~~~~~l~g~~i~v~~~~ 131 (239)
+|.+.++|++|++ +|+..+.|+.|.|.+++
T Consensus 88 ~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ak 118 (118)
T 2khc_A 88 SFDNPDSAQVAIKAMNGFQVGTKRLKVQLKK 118 (118)
T ss_dssp EEESSHHHHHHHHHCCCCEETTEECCEEEC-
T ss_pred EECCHHHHHHHHHHcCCCEECCEEEEEEecC
Confidence 9999999999999 99999999999998863
No 247
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=1.5e-14 Score=101.46 Aligned_cols=82 Identities=17% Similarity=0.273 Sum_probs=70.9
Q ss_pred cceeEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccCCcee-EEEEeecccccCCCccceeeecccccCCCCcceEE
Q psy14193 22 SKLKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGEVE-TVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAY 100 (239)
Q Consensus 22 ~~~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~I~-~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~af 100 (239)
..+.|||+.+......+ +|+++|++||+|. +|+ ++.++.++.++||||
T Consensus 8 ~~~~l~V~nLp~~~t~~--------------~l~~~F~~~G~i~~~v~-----------------i~~~~~~g~~~g~af 56 (99)
T 2div_A 8 MAASLWMGDLEPYMDEN--------------FISRAFATMGETVMSVK-----------------IIRNRLTGIPAGYCF 56 (99)
T ss_dssp SSSEEEECSCCTTCCHH--------------HHHHHHHHTTCCCCEEE-----------------EEECSSSCCEEEEEE
T ss_pred CccEEEEeCCCCCCCHH--------------HHHHHHHHhCCcceEEE-----------------EeecCCCCCcCCEEE
Confidence 45788998876554444 9999999999999 988 355677888999999
Q ss_pred EEeCCHHHHHHHHH-hCCCccCCee----EEEeccCCCC
Q psy14193 101 VRFKNLESVEKALE-MNGHVIDEHT----IRVDKALTTT 134 (239)
Q Consensus 101 V~f~~~e~a~~Ai~-~~~~~l~g~~----i~v~~~~~~~ 134 (239)
|+|.+.++|++|++ +|+..+.|+. |+|.++.+..
T Consensus 57 V~f~~~~~a~~A~~~l~g~~~~g~~~~~~l~v~~a~~~~ 95 (99)
T 2div_A 57 VEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYSG 95 (99)
T ss_dssp EECSCHHHHHHHHHTTTTSEESSCSSCEECCEEETTCCS
T ss_pred EEeCCHHHHHHHHHHHcCCccCCCCcceeEEEeecCCCC
Confidence 99999999999999 9999999999 9999998764
No 248
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=3.2e-14 Score=102.26 Aligned_cols=86 Identities=14% Similarity=0.237 Sum_probs=73.1
Q ss_pred cccceeEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccCCcee--------EEEEeecccccCCCccceeeeccccc
Q psy14193 20 LMSKLKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGEVE--------TVRFRSVPVADITLPRKACIKMNKVH 91 (239)
Q Consensus 20 ~~~~~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~I~--------~v~l~~~~~~~~~~~~~~~~~~~~~~ 91 (239)
....+.|||+++......+ +|+++|++||.|. .|+ ++.+..
T Consensus 12 ~~~~~~l~V~nLp~~~t~~--------------~l~~~F~~~G~i~~~~~~~~~~v~-----------------i~~~~~ 60 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLD--------------DLADFFKQCGVVKMNKRTGQPMIH-----------------IYLDKE 60 (113)
T ss_dssp CCCCCEEEEECCCTTCCHH--------------HHHHHHTTTSCBCBCSSSCCBSEE-----------------CCBCTT
T ss_pred CCCCCEEEEcCCCCCCCHH--------------HHHHHHHhcCCEeEccccCccCEE-----------------EEEeCC
Confidence 3467899999876554444 9999999999998 465 456777
Q ss_pred CCCCcceEEEEeCCHHHHHHHHH-hCCCccCCeeEEEeccCCCCCC
Q psy14193 92 EKRTNMNAYVRFKNLESVEKALE-MNGHVIDEHTIRVDKALTTTKS 136 (239)
Q Consensus 92 t~~~~G~afV~f~~~e~a~~Ai~-~~~~~l~g~~i~v~~~~~~~~~ 136 (239)
++.++|||||+|.+.++|++|++ +|+..+.|+.|.|.++.+....
T Consensus 61 ~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~ 106 (113)
T 2cpe_A 61 TGKPKGDATVSYEDPPTAKAAVEWFDGKDFQGSKLKVSLARKKPPM 106 (113)
T ss_dssp TCSBCSEEEEEBSSHHHHHHHHHHHTTCEETTEECEEECSSCCCCS
T ss_pred CCCeeeEEEEEECCHHHHHHHHHHcCCCccCCCEEEEEECCCCCCC
Confidence 88899999999999999999999 9999999999999999877643
No 249
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.51 E-value=5.7e-15 Score=101.86 Aligned_cols=80 Identities=18% Similarity=0.288 Sum_probs=64.7
Q ss_pred eeEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEEEe
Q psy14193 24 LKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRF 103 (239)
Q Consensus 24 ~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV~f 103 (239)
+.|||+++...... ++|+++|++||+|.+|+ ++++..++.++|||||+|
T Consensus 2 ~~l~V~nLp~~~t~--------------~~l~~~F~~~G~i~~v~-----------------i~~~~~~~~~~g~afV~f 50 (90)
T 2ki2_A 2 RNIYVGNLVYSATS--------------EQVKELFSQFGKVFNVK-----------------LIYDRETKKPKGFGFVEM 50 (90)
T ss_dssp EEEEEEEECTTSSH--------------HHHTTTHHHHTCCSEEE-----------------ECCCSSSCCCCEEEEEEE
T ss_pred cEEEECCCCCCCCH--------------HHHHHHHHhcCCEEEEE-----------------EEEcCCCCCcceEEEEEE
Confidence 46777776555443 49999999999999988 355667788999999999
Q ss_pred CCHHHHHHHHH-hCCCccCCeeEEEeccCCCCC
Q psy14193 104 KNLESVEKALE-MNGHVIDEHTIRVDKALTTTK 135 (239)
Q Consensus 104 ~~~e~a~~Ai~-~~~~~l~g~~i~v~~~~~~~~ 135 (239)
.+.+ |++|+. +|+..+.|++|.|.++.+...
T Consensus 51 ~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~~~ 82 (90)
T 2ki2_A 51 QEES-VSEAIAKLDNTDFMGRTIRVTEANPKKS 82 (90)
T ss_dssp CTTH-HHHHHHTSCSSCCSSSSCSEEEC-----
T ss_pred CCHH-HHHHHHHhCCCEECCeEEEEEEcCCCCC
Confidence 9999 999999 999999999999999987653
No 250
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=4.9e-14 Score=99.85 Aligned_cols=83 Identities=23% Similarity=0.352 Sum_probs=70.1
Q ss_pred cceeEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccCCceeEEEEeecccccCCCccceeeecccccC-CCCcceEE
Q psy14193 22 SKLKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHE-KRTNMNAY 100 (239)
Q Consensus 22 ~~~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t-~~~~G~af 100 (239)
..+.|||+++......+ +|+++|++|| |.+|+ ++.+..+ ++++||||
T Consensus 14 ~~~~l~V~nlp~~~t~~--------------~l~~~F~~~G-i~~v~-----------------i~~~~~~~g~~~g~af 61 (104)
T 1wi8_A 14 PPYTAFLGNLPYDVTEE--------------SIKEFFRGLN-ISAVR-----------------LPREPSNPERLKGFGY 61 (104)
T ss_dssp SCEEEEEESCCSSCCHH--------------HHHHHTTTSC-EEEEE-----------------CCBCSSCTTSBCSCEE
T ss_pred CCCEEEEeCCCCcCCHH--------------HHHHHHHHCC-ceEEE-----------------EecCCCCCCCcCeEEE
Confidence 34788988776554443 9999999999 99988 3455666 78899999
Q ss_pred EEeCCHHHHHHHHHhCCCccCCeeEEEeccCCCCCC
Q psy14193 101 VRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKS 136 (239)
Q Consensus 101 V~f~~~e~a~~Ai~~~~~~l~g~~i~v~~~~~~~~~ 136 (239)
|+|.+.++|++|+.+|+..+.|+.|.|.++.++...
T Consensus 62 V~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~~~~~ 97 (104)
T 1wi8_A 62 AEFEDLDSLLSALSLNEESLGNKRIRVDVADQAQDK 97 (104)
T ss_dssp EEESSHHHHHHHHGGGTCEETTEECEEEECCCCCCC
T ss_pred EEECCHHHHHHHHhcCCCEeCCcEEEEEEccCCCCC
Confidence 999999999999999999999999999999887654
No 251
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=3.5e-14 Score=97.40 Aligned_cols=71 Identities=18% Similarity=0.258 Sum_probs=62.9
Q ss_pred CcE-EEEcCCCCCCcHHH----HHHHhhcCC-CeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEe
Q psy14193 138 SHS-IFIGNIPFEAEEEE----LRKAFESCG-EIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIR 211 (239)
Q Consensus 138 ~~~-l~V~nLp~~~t~~~----l~~~F~~~G-~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~ 211 (239)
..+ |||+|||+.+++++ |+++|++|| +|.+| ++ |+|||.|.+.++|.+|+..|+|..+.||.++
T Consensus 8 ~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~ 77 (96)
T 2diu_A 8 CHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNRII 77 (96)
T ss_dssp SSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCE
T ss_pred cceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceEE
Confidence 445 99999999999888 558999995 99888 34 8999999999999999999999999999999
Q ss_pred eCCCCCC
Q psy14193 212 DQHTNIG 218 (239)
Q Consensus 212 ~~~~~~~ 218 (239)
++.+...
T Consensus 78 v~~A~~~ 84 (96)
T 2diu_A 78 VSFTPKN 84 (96)
T ss_dssp EESSCCS
T ss_pred EEecCCC
Confidence 9877543
No 252
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.51 E-value=2.6e-14 Score=106.53 Aligned_cols=88 Identities=17% Similarity=0.321 Sum_probs=73.5
Q ss_pred ccccceeEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcce
Q psy14193 19 NLMSKLKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMN 98 (239)
Q Consensus 19 ~~~~~~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~ 98 (239)
..-..+.|||+.+...... ++|+++|++||+|.+|++ +.+..++.++||
T Consensus 38 ~~~~~~~l~V~nLp~~~~~--------------~~l~~~F~~~G~i~~v~i-----------------~~~~~~~~~~g~ 86 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDE--------------VQLRQLFERYGPIESVKI-----------------VCDRETRQSRGY 86 (139)
T ss_dssp CTTTTSEEEEESCSTTCCH--------------HHHHHHHHHHSCEEEEEE-----------------EEETTTTEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCH--------------HHHHHHHHhcCCeEEEEE-----------------EEcCCCCCcceE
Confidence 3445578888876555433 499999999999999983 556677888999
Q ss_pred EEEEeCCHHHHHHHHH-hCCCccCCeeEEEeccCCCCCCC
Q psy14193 99 AYVRFKNLESVEKALE-MNGHVIDEHTIRVDKALTTTKSN 137 (239)
Q Consensus 99 afV~f~~~e~a~~Ai~-~~~~~l~g~~i~v~~~~~~~~~~ 137 (239)
|||+|.+.++|++|++ +|+..+.|+.|.|.++.+...+.
T Consensus 87 afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~ 126 (139)
T 1u6f_A 87 GFVKFQSGSSAQQAIAGLNGFNILNKRLKVALAASGHQRP 126 (139)
T ss_dssp EEEEESSHHHHHHHHHHTTTEECSSCEEEEEESSCCCCCC
T ss_pred EEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCCCC
Confidence 9999999999999999 99999999999999998876543
No 253
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.51 E-value=4.8e-14 Score=99.69 Aligned_cols=83 Identities=18% Similarity=0.371 Sum_probs=71.2
Q ss_pred cceeEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEE
Q psy14193 22 SKLKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYV 101 (239)
Q Consensus 22 ~~~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV 101 (239)
..+.|||+++......+ +|+++|++|| |.+|+ ++.+..+++++|||||
T Consensus 14 ~~~~l~V~nLp~~~t~~--------------~l~~~F~~~g-i~~v~-----------------i~~~~~~g~~~g~afV 61 (103)
T 2dng_A 14 PPYTAYVGNLPFNTVQG--------------DIDAIFKDLS-IRSVR-----------------LVRDKDTDKFKGFCYV 61 (103)
T ss_dssp SCEEEEEESCCTTCCHH--------------HHHHHTTTSC-EEEEE-----------------EEECSSSCSEEEEEEE
T ss_pred CCeEEEEeCCCCCCCHH--------------HHHHHHHhCC-ceEEE-----------------EeecCCCCccceEEEE
Confidence 45789998876654444 9999999997 99988 4556778889999999
Q ss_pred EeCCHHHHHHHHHhCCCccCCeeEEEeccCCCCCC
Q psy14193 102 RFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKS 136 (239)
Q Consensus 102 ~f~~~e~a~~Ai~~~~~~l~g~~i~v~~~~~~~~~ 136 (239)
+|.+.++|++|+++|+..+.|+.|.|.++.+....
T Consensus 62 ~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~~~~~ 96 (103)
T 2dng_A 62 EFDEVDSLKEALTYDGALLGDRSLRVDIAEGRKQD 96 (103)
T ss_dssp EESSHHHHHHHGGGTTCEETTEECEEEECCCCCCC
T ss_pred EECCHHHHHHHHhhCCCeECCeEEEEEEecCCCCC
Confidence 99999999999999999999999999999877543
No 254
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.50 E-value=1.9e-14 Score=102.12 Aligned_cols=85 Identities=20% Similarity=0.258 Sum_probs=72.3
Q ss_pred ccceeEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEE
Q psy14193 21 MSKLKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAY 100 (239)
Q Consensus 21 ~~~~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~af 100 (239)
-..+.|||+.+...... ++|+++|++||+|.+|+ ++.++.++.++||||
T Consensus 14 ~~~~~l~V~nlp~~~t~--------------~~l~~~F~~~G~v~~v~-----------------i~~~~~~g~~~g~af 62 (105)
T 2dh8_A 14 DEIGKLFVGGLDWSTTQ--------------ETLRSYFSQYGEVVDCV-----------------IMKDKTTNQSRGFGF 62 (105)
T ss_dssp SSSSEECCBSCCTTCCH--------------HHHHHHHHTTSCEEEEE-----------------EEECSSSCCEEEEEE
T ss_pred CCCCEEEEeCCCCCCCH--------------HHHHHHHHhcCCeEEEE-----------------EeeCCCCCCcceEEE
Confidence 35678888877655444 49999999999999988 355667888999999
Q ss_pred EEeCCHHHHHHHHHhCCCccCCeeEEEeccCCCCCC
Q psy14193 101 VRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKS 136 (239)
Q Consensus 101 V~f~~~e~a~~Ai~~~~~~l~g~~i~v~~~~~~~~~ 136 (239)
|+|.+.++|++|++.++..+.|+.|.|.++.++...
T Consensus 63 V~f~~~~~a~~a~~~~~~~~~g~~l~V~~a~~~~~~ 98 (105)
T 2dh8_A 63 VKFKDPNCVGTVLASRPHTLDGRNIDPKPCTPRGMQ 98 (105)
T ss_dssp EEESSTTHHHHHHHHCSEEETTEEEBCCCSCCSSCC
T ss_pred EEECCHHHHHHHHHhCCCeECCEEEEEEEccCCCCC
Confidence 999999999999999999999999999999877654
No 255
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.50 E-value=3.4e-14 Score=98.87 Aligned_cols=79 Identities=20% Similarity=0.284 Sum_probs=65.9
Q ss_pred cceeEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEE
Q psy14193 22 SKLKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYV 101 (239)
Q Consensus 22 ~~~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV 101 (239)
..+.|||+.+...... ++|+++|++||+|.+|++ ..+.. +.++|||||
T Consensus 15 ~~~~l~v~nlp~~~~~--------------~~l~~~F~~~G~i~~v~i-----------------~~~~~-g~~~g~afV 62 (95)
T 2ywk_A 15 ADRTVFVGNLEARVRE--------------EILYELFLQAGPLTKVTI-----------------CKDRE-GKPKSFGFV 62 (95)
T ss_dssp GGGEEEEECCCTTCCH--------------HHHHHHHGGGSCEEEEEE-----------------EECTT-SCEEEEEEE
T ss_pred CCCEEEEECCCCCCCH--------------HHHHHHHHhcCCEEEEEE-----------------EECCC-CCCceEEEE
Confidence 4578888877655444 399999999999999984 23333 667899999
Q ss_pred EeCCHHHHHHHHH-hCCCccCCeeEEEeccCC
Q psy14193 102 RFKNLESVEKALE-MNGHVIDEHTIRVDKALT 132 (239)
Q Consensus 102 ~f~~~e~a~~Ai~-~~~~~l~g~~i~v~~~~~ 132 (239)
+|.+.++|++|++ +|+..+.|++|.|.++..
T Consensus 63 ~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 94 (95)
T 2ywk_A 63 CFKHPESVSYAIALLNGIRLYGRPINVSGPSS 94 (95)
T ss_dssp EESSTHHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred EECCHHHHHHHHHHhCCCEECCCEEEEEEcCC
Confidence 9999999999999 999999999999998763
No 256
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.50 E-value=4.1e-14 Score=103.73 Aligned_cols=85 Identities=15% Similarity=0.234 Sum_probs=72.3
Q ss_pred ccceeEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEE
Q psy14193 21 MSKLKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAY 100 (239)
Q Consensus 21 ~~~~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~af 100 (239)
..+..|||+++...... ++|+++|++||+|.+|. ++.+..++.++||||
T Consensus 20 ~~~~~l~V~nlp~~~t~--------------~~l~~~F~~~G~i~~v~-----------------i~~~~~~~~~~g~af 68 (126)
T 3ex7_B 20 VEGWILFVTGVHEEATE--------------EDIHDKFAEYGEIKNIH-----------------LNLDRRTGYLKGYTL 68 (126)
T ss_dssp SSSEEEEEESCCTTCCH--------------HHHHHHHHTTSCEEEEE-----------------CCBCTTTSSBCSCEE
T ss_pred CCCCEEEEeCCCCCCCH--------------HHHHHHHHhcCCeEEEE-----------------EEecCCCCccceEEE
Confidence 35678999887655444 49999999999999988 355666888899999
Q ss_pred EEeCCHHHHHHHHH-hCCCccCCeeEEEeccCCCCCC
Q psy14193 101 VRFKNLESVEKALE-MNGHVIDEHTIRVDKALTTTKS 136 (239)
Q Consensus 101 V~f~~~e~a~~Ai~-~~~~~l~g~~i~v~~~~~~~~~ 136 (239)
|+|.+.++|++|++ +|+..+.|+.|.|.++.+....
T Consensus 69 V~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 105 (126)
T 3ex7_B 69 VEYETYKEAQAAMEGLNGQDLMGQPISVDWCFVRGPP 105 (126)
T ss_dssp EEESSHHHHHHHHHHHTTCBSSSSBCEEEESEESSSC
T ss_pred EEECCHHHHHHHHHHhCCCeeCCeEEEEEEecCCCCC
Confidence 99999999999999 9999999999999999876543
No 257
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=4.3e-14 Score=102.15 Aligned_cols=84 Identities=19% Similarity=0.334 Sum_probs=71.4
Q ss_pred cceeEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEE
Q psy14193 22 SKLKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYV 101 (239)
Q Consensus 22 ~~~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV 101 (239)
..+.|||+.+...... ++|+++|++||+|.+|+ ++.++.++.++|||||
T Consensus 26 ~~~~l~V~nLp~~~te--------------~~l~~~F~~~G~i~~v~-----------------i~~~~~~g~~~g~afV 74 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTE--------------ESLRNYYEQWGKLTDCV-----------------VMRDPASKRSRGFGFV 74 (116)
T ss_dssp HHTEEEEECCTTCCCH--------------HHHHHHHTSSCCCSEEE-----------------EECCTTTSSCCSEEEE
T ss_pred CCCEEEEeCCCCCCCH--------------HHHHHHHHhcCCEEEEE-----------------EEECCCCCCcCceEEE
Confidence 4577888876555444 49999999999999988 3556778889999999
Q ss_pred EeCCHHHHHHHHHhCCCccCCeeEEEeccCCCCCC
Q psy14193 102 RFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKS 136 (239)
Q Consensus 102 ~f~~~e~a~~Ai~~~~~~l~g~~i~v~~~~~~~~~ 136 (239)
+|.+.++|++|++.++..+.|+.|.|.++.++...
T Consensus 75 ~f~~~~~a~~Ai~~~~~~~~g~~l~V~~a~~~~~~ 109 (116)
T 1x4b_A 75 TFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREES 109 (116)
T ss_dssp ECSSHHHHHHHHTSCSEEETTEEEEEECCSSCCCC
T ss_pred EeCCHHHHHHHHHhCCcEECCEEEEEEECCCCccC
Confidence 99999999999999999999999999999887653
No 258
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.49 E-value=3.6e-14 Score=108.08 Aligned_cols=84 Identities=23% Similarity=0.324 Sum_probs=70.2
Q ss_pred cceeEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEE
Q psy14193 22 SKLKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYV 101 (239)
Q Consensus 22 ~~~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV 101 (239)
....|||+.+...... ++|+++|++||+|.+|+ ++.|..++.++|||||
T Consensus 69 ~~~~l~v~nl~~~~~~--------------~~l~~~F~~~G~v~~~~-----------------i~~~~~~g~~~g~afV 117 (158)
T 2kn4_A 69 GMTSLKVDNLTYRTSP--------------DTLRRVFEKYGRVGDVY-----------------IPRDRYTKESRGFAFV 117 (158)
T ss_dssp BCCEEEEESCCTTCCH--------------HHHHHHHHHHSCEEEEE-----------------CCCCSSCTTSCCEEEE
T ss_pred CCCEEEEeCCCCCCCH--------------HHHHHHHHhcCCeEEEE-----------------EeecCCCCccceEEEE
Confidence 3566777765544333 49999999999999988 4556678889999999
Q ss_pred EeCCHHHHHHHHH-hCCCccCCeeEEEeccCCCCCC
Q psy14193 102 RFKNLESVEKALE-MNGHVIDEHTIRVDKALTTTKS 136 (239)
Q Consensus 102 ~f~~~e~a~~Ai~-~~~~~l~g~~i~v~~~~~~~~~ 136 (239)
+|.+.++|++|++ +|+..+.|++|.|.++.+....
T Consensus 118 ~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 153 (158)
T 2kn4_A 118 RFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPP 153 (158)
T ss_dssp EESBHHHHHHHHHHSTTEESSSSEEEEEEECCSSCC
T ss_pred EECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCCC
Confidence 9999999999999 9999999999999999877543
No 259
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=5.8e-14 Score=101.44 Aligned_cols=82 Identities=17% Similarity=0.263 Sum_probs=69.5
Q ss_pred ccceeEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEE
Q psy14193 21 MSKLKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAY 100 (239)
Q Consensus 21 ~~~~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~af 100 (239)
...+.|||+.+...... ++|+++|++||+|.+|+ +++++.++.++||||
T Consensus 15 ~~~~~l~V~nlp~~~t~--------------~~l~~~F~~~G~i~~v~-----------------i~~~~~~~~~~g~af 63 (116)
T 2cqd_A 15 TTFTKIFVGGLPYHTTD--------------ASLRKYFEGFGDIEEAV-----------------VITDRQTGKSRGYGF 63 (116)
T ss_dssp CSSSEEEEECCCSSCCH--------------HHHHHHHHTTSCEEEEE-----------------ESCCSSSCCCCSEEE
T ss_pred CCCCEEEEeCCCCCCCH--------------HHHHHHHHhCCCeeEEE-----------------EEEcCCCCccceEEE
Confidence 35678999877655444 49999999999999988 355667888999999
Q ss_pred EEeCCHHHHHHHHH-hCCCccCCeeEEEeccCCCC
Q psy14193 101 VRFKNLESVEKALE-MNGHVIDEHTIRVDKALTTT 134 (239)
Q Consensus 101 V~f~~~e~a~~Ai~-~~~~~l~g~~i~v~~~~~~~ 134 (239)
|+|.+.++|++|++ +++ .+.|+.|.|.++.+..
T Consensus 64 V~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~a~~~~ 97 (116)
T 2cqd_A 64 VTMADRAAAERACKDPNP-IIDGRKANVNLAYLGA 97 (116)
T ss_dssp EEESSHHHHHHHHTCSSC-EETTEECEEEESTTTC
T ss_pred EEECCHHHHHHHHHhCCC-cCCCEEEEEEEcccCC
Confidence 99999999999999 887 8999999999997653
No 260
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.49 E-value=2.4e-14 Score=100.23 Aligned_cols=82 Identities=10% Similarity=0.139 Sum_probs=69.4
Q ss_pred cceeEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEE
Q psy14193 22 SKLKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYV 101 (239)
Q Consensus 22 ~~~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV 101 (239)
....|||+.+......+ +|+++|++||.|.++. ++.+..+++++|||||
T Consensus 14 ~~~~l~v~nLp~~~t~~--------------~l~~~F~~~G~v~~~~-----------------~~~~~~~g~~~g~afV 62 (98)
T 2cqp_A 14 GPTIIKVQNMPFTVSID--------------EILDFFYGYQVIPGSV-----------------CLKYNEKGMPTGEAMV 62 (98)
T ss_dssp SSEEEEEESCCTTCCHH--------------HHHHHTTTSCCCTTTC-----------------EEEECSSSCEEEEEEE
T ss_pred CCCEEEEeCCCCCCCHH--------------HHHHHHHHcCCccceE-----------------EEEECCCCCeeeEEEE
Confidence 45789998876554444 9999999999998765 3456678888999999
Q ss_pred EeCCHHHHHHHHH-hCCCccCCeeEEEeccCCCC
Q psy14193 102 RFKNLESVEKALE-MNGHVIDEHTIRVDKALTTT 134 (239)
Q Consensus 102 ~f~~~e~a~~Ai~-~~~~~l~g~~i~v~~~~~~~ 134 (239)
+|.+.++|++|++ +|+..+.|+.|.|.++..+.
T Consensus 63 ~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~ 96 (98)
T 2cqp_A 63 AFESRDEATAAVIDLNDRPIGSRKVKLVLGSGPS 96 (98)
T ss_dssp EESCHHHHHHHHHHTTTCEETTEECEEEESSCSS
T ss_pred EECCHHHHHHHHHHhCCCeeCCeEEEEEEcCCCC
Confidence 9999999999998 99999999999999987653
No 261
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.49 E-value=1.2e-13 Score=100.84 Aligned_cols=72 Identities=11% Similarity=0.131 Sum_probs=63.8
Q ss_pred cEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceE-EEEEecChHHHHHHHHHhCCcEeeE--EEEeeCCC
Q psy14193 139 HSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGF-GYVNFKAEEEELRKAFESCGEIDNV--RLIRDQHT 215 (239)
Q Consensus 139 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~-~fV~F~~~e~a~~a~~~~~g~~~~~--r~l~~~~~ 215 (239)
..|||+|||+.+|+++|+++|++||+|.+|.+... .|| |||+|.+.++|..|+..|||..+.+ +.|++..+
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~A 99 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYA 99 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECC
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEe
Confidence 45789999999999999999999999999998642 276 9999999999999999999999977 68888766
Q ss_pred C
Q psy14193 216 N 216 (239)
Q Consensus 216 ~ 216 (239)
.
T Consensus 100 k 100 (124)
T 2e5i_A 100 R 100 (124)
T ss_dssp S
T ss_pred c
Confidence 3
No 262
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=2.8e-14 Score=102.84 Aligned_cols=82 Identities=22% Similarity=0.332 Sum_probs=69.3
Q ss_pred ccceeEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEE
Q psy14193 21 MSKLKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAY 100 (239)
Q Consensus 21 ~~~~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~af 100 (239)
...+.|||+++...... ++|+++|++||.|.+|++ +.+..++.++||||
T Consensus 23 ~~~~~l~V~nlp~~~t~--------------~~l~~~F~~~G~i~~v~i-----------------~~~~~~g~~~g~af 71 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRP--------------RDLEDFFSAVGKVRDVRI-----------------ISDRNSRRSKGIAY 71 (114)
T ss_dssp HHHTEEEEESCCTTCCH--------------HHHHHHHTTTSCEEEEEE-----------------CCSCCSSSCCCCEE
T ss_pred CCCCEEEEeCCCCCCCH--------------HHHHHHHHhCCCEeEEEE-----------------EecCCCCccCcEEE
Confidence 34567888876555444 499999999999999983 55667788899999
Q ss_pred EEeCCHHHHHHHHHhCCCccCCeeEEEeccCCC
Q psy14193 101 VRFKNLESVEKALEMNGHVIDEHTIRVDKALTT 133 (239)
Q Consensus 101 V~f~~~e~a~~Ai~~~~~~l~g~~i~v~~~~~~ 133 (239)
|+|.+.++|++|+.+|+..+.|+.|.|.++.+.
T Consensus 72 V~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~~ 104 (114)
T 2cq4_A 72 VEFCEIQSVPLAIGLTGQRLLGVPIIVQASQAE 104 (114)
T ss_dssp EEESCGGGHHHHHHHTTEEETTEEEEEEEHHHH
T ss_pred EEeCcHHHHHHHHHcCCCEeCCeEEEEEecCCC
Confidence 999999999999999999999999999988654
No 263
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.48 E-value=2.1e-14 Score=95.95 Aligned_cols=61 Identities=28% Similarity=0.415 Sum_probs=55.0
Q ss_pred HHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEEEeCCHHHHHHHHH-hCCCccCCeeEEEecc
Q psy14193 52 SSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALE-MNGHVIDEHTIRVDKA 130 (239)
Q Consensus 52 ~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV~f~~~e~a~~Ai~-~~~~~l~g~~i~v~~~ 130 (239)
++|+++|++||+|.+|++ ..++.+++++|||||+|.+.++|++|++ ++ ..+.|++|.|.++
T Consensus 15 ~~l~~~F~~~G~v~~v~i-----------------~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 15 EGLREYFGQFGEVKECLV-----------------MRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp HHHHHHHTTTSCCCCEEE-----------------ECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred HHHHHHHHhcCCEEEEEE-----------------ecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 499999999999999883 4566678889999999999999999999 88 9999999999886
No 264
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=7.7e-14 Score=98.92 Aligned_cols=82 Identities=20% Similarity=0.190 Sum_probs=69.1
Q ss_pred ccceeEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccCCceeE-EEEeecccccCCCccceeeecccccCCCCcceE
Q psy14193 21 MSKLKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGEVET-VRFRSVPVADITLPRKACIKMNKVHEKRTNMNA 99 (239)
Q Consensus 21 ~~~~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~I~~-v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~a 99 (239)
-....|||+.+......+ +|+++|++||.|.+ |++ +.+ .+++++|||
T Consensus 13 ~~~~~l~V~nLp~~~te~--------------~l~~~F~~~G~v~~~v~i-----------------~~~-~~g~~~G~a 60 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKE--------------EIVQFFSGLEIVPNGMTL-----------------PVD-FQGRSTGEA 60 (104)
T ss_dssp SCCCEEEEESCCTTCCHH--------------HHHHHTTTCCEEEEEEEC-----------------CBC-SSSCBCSEE
T ss_pred CCCCEEEEeCCCCCCCHH--------------HHHHHHHhcCCcceeEEE-----------------EEC-CCCCcceEE
Confidence 356789999877665554 99999999999987 662 334 577888999
Q ss_pred EEEeCCHHHHHHHHHhCCCccCCeeEEEeccCCCC
Q psy14193 100 YVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTT 134 (239)
Q Consensus 100 fV~f~~~e~a~~Ai~~~~~~l~g~~i~v~~~~~~~ 134 (239)
||+|.++++|++|++.++..++|+.|.|.++.+..
T Consensus 61 fV~F~~~~~a~~A~~~~~~~~~gr~i~v~~~~~~~ 95 (104)
T 1wg5_A 61 FVQFASQEIAEKALKKHKERIGHRYIEIFKSSRAE 95 (104)
T ss_dssp EEEESSHHHHHHHHTTTTCCSSSSCCEEEEECTTT
T ss_pred EEEECCHHHHHHHHHhCcchhCCcEEEEEECCHHH
Confidence 99999999999999999999999999999887654
No 265
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.48 E-value=6.3e-14 Score=99.71 Aligned_cols=78 Identities=15% Similarity=0.261 Sum_probs=66.0
Q ss_pred cceeEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEE
Q psy14193 22 SKLKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYV 101 (239)
Q Consensus 22 ~~~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV 101 (239)
....|||+++...... ++|+++|++||+|.+|++ +.+. ++.++|||||
T Consensus 28 ~~~~l~V~nlp~~~t~--------------~~l~~~F~~~G~i~~v~i-----------------~~~~-~g~~~g~afV 75 (107)
T 3ulh_A 28 TGGKLLVSNLDFGVSD--------------ADIQELFAEFGTLKKAAV-----------------HYDR-SGRSLGTADV 75 (107)
T ss_dssp CSEEEEEESCCTTCCH--------------HHHHHHHHTTSCEEEEEE-----------------EECT-TSCEEEEEEE
T ss_pred CCCEEEEeCCCCCCCH--------------HHHHHHHHhcCCeEEEEE-----------------EECC-CCCcceEEEE
Confidence 4678888876555443 499999999999999984 3444 6778899999
Q ss_pred EeCCHHHHHHHHH-hCCCccCCeeEEEeccC
Q psy14193 102 RFKNLESVEKALE-MNGHVIDEHTIRVDKAL 131 (239)
Q Consensus 102 ~f~~~e~a~~Ai~-~~~~~l~g~~i~v~~~~ 131 (239)
+|.+.++|++|++ +|+..+.|+.|.|.++.
T Consensus 76 ~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 106 (107)
T 3ulh_A 76 HFERKADALKAMKQYNGVPLDGRPMNIQLVT 106 (107)
T ss_dssp EESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred EECCHHHHHHHHHHhCCCEeCCcEEEEEEeC
Confidence 9999999999999 99999999999999874
No 266
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=4.1e-14 Score=100.14 Aligned_cols=83 Identities=13% Similarity=0.227 Sum_probs=70.1
Q ss_pred cceeEEeehhhHhhhhhcCCCcchhhchhHHHHHHhccc-CCceeEEEEeecccccCCCccceeeecccccCCCCcceEE
Q psy14193 22 SKLKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKP-YGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAY 100 (239)
Q Consensus 22 ~~~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~-~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~af 100 (239)
....|||+.+......+ +|+++|++ ||+|.+|++ +.+. ++.++||||
T Consensus 8 ~~~~l~V~nLp~~~t~~--------------~l~~~F~~~~G~v~~v~i-----------------~~~~-~g~~~g~af 55 (104)
T 2dhg_A 8 PEYSLFVGDLTPDVDDG--------------MLYEFFVKVYPSCRGGKV-----------------VLDQ-TGVSKGYGF 55 (104)
T ss_dssp CCCCEEEECCCTTCCHH--------------HHHHHHHHHCTTEEEEEE-----------------EECT-TCCEEEEEE
T ss_pred CCcEEEEeCCCCCCCHH--------------HHHHHHHHhCCCeEEEEE-----------------EECC-CCCccceEE
Confidence 45788888776554444 99999999 999999984 4455 778889999
Q ss_pred EEeCCHHHHHHHHH-hCCCc-cCCeeEEEeccCCCCCC
Q psy14193 101 VRFKNLESVEKALE-MNGHV-IDEHTIRVDKALTTTKS 136 (239)
Q Consensus 101 V~f~~~e~a~~Ai~-~~~~~-l~g~~i~v~~~~~~~~~ 136 (239)
|+|.+.++|++|++ +++.. +.|+.|.|.++.++...
T Consensus 56 V~f~~~~~a~~A~~~l~g~~~~~g~~l~v~~a~~~~~~ 93 (104)
T 2dhg_A 56 VKFTDELEQKRALTECQGAVGLGSKPVRLSVAIPKASR 93 (104)
T ss_dssp EEESCHHHHHHHHHHTTTCCSSSSSCCCCCBCCCCCSC
T ss_pred EEECCHHHHHHHHHHccCCcccCCEeEEEEEccCCCcC
Confidence 99999999999999 99999 99999999999776543
No 267
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=1.4e-13 Score=97.18 Aligned_cols=83 Identities=17% Similarity=0.350 Sum_probs=68.4
Q ss_pred ccceeEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEE
Q psy14193 21 MSKLKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAY 100 (239)
Q Consensus 21 ~~~~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~af 100 (239)
-..+.|||+.+......+ +|+++|++||+|.+|++ +.+. +.++||||
T Consensus 13 ~~~~~l~V~nlp~~~t~~--------------~l~~~f~~~G~v~~v~i-----------------~~~~--~~~~g~af 59 (103)
T 2cq3_A 13 STPKRLHVSNIPFRFRDP--------------DLRQMFGQFGKILDVEI-----------------IFNE--RGSKGFGF 59 (103)
T ss_dssp CCCCEEEEESCCTTCCHH--------------HHHHHGGGTSCEEEEEE-----------------ECCT--TTTCCEEE
T ss_pred CCCCEEEEeCCCCCCCHH--------------HHHHHHHhcCCeEEEEE-----------------EecC--CCCcEEEE
Confidence 356889998776554443 99999999999999984 2222 23679999
Q ss_pred EEeCCHHHHHHHHH-hCCCccCCeeEEEeccCCCCCC
Q psy14193 101 VRFKNLESVEKALE-MNGHVIDEHTIRVDKALTTTKS 136 (239)
Q Consensus 101 V~f~~~e~a~~Ai~-~~~~~l~g~~i~v~~~~~~~~~ 136 (239)
|+|.+.++|++|++ +|+..+.|+.|.|.++.++...
T Consensus 60 V~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 96 (103)
T 2cq3_A 60 VTFENSADADRAREKLHGTVVEGRKIEVNNATARVMT 96 (103)
T ss_dssp EEESCHHHHHHHHHHHTTCEETTEECEEEECCSSCCC
T ss_pred EEECCHHHHHHHHHHhCCCEECCEEEEEEEcccCCCC
Confidence 99999999999999 9999999999999999877643
No 268
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.48 E-value=3.4e-14 Score=96.03 Aligned_cols=77 Identities=13% Similarity=0.256 Sum_probs=59.6
Q ss_pred eeEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEEEe
Q psy14193 24 LKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRF 103 (239)
Q Consensus 24 ~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV~f 103 (239)
+.|||+++...... ......++|+++|++||+|.+|++ + ..+++++|||||+|
T Consensus 2 ~~l~V~nLp~~~~~--------~~~~t~~~l~~~F~~~G~i~~v~i---~----------------~~~g~~~g~afV~f 54 (81)
T 2krb_A 2 SVIVVDNVPQVGPD--------RLEKLKNVIHKIFSKFGKITNDFY---P----------------EEDGKTKGYIFLEY 54 (81)
T ss_dssp CEEEEESCCCCCTT--------THHHHHHHHHHHHHTTCCEEEEEC---C----------------CBTTBCCCEEEEEE
T ss_pred CEEEEeCCCCCcHH--------HHHHHHHHHHHHHhhcCCeEEEEe---c----------------CCCCcEeEEEEEEE
Confidence 56788876433210 011133699999999999999884 1 24667889999999
Q ss_pred CCHHHHHHHHH-hCCCccCCe-eEEE
Q psy14193 104 KNLESVEKALE-MNGHVIDEH-TIRV 127 (239)
Q Consensus 104 ~~~e~a~~Ai~-~~~~~l~g~-~i~v 127 (239)
.+.++|++|++ +||..+.|+ +|.|
T Consensus 55 ~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 55 ASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp SSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred CCHHHHHHHHHHhcCcccCCceeEEe
Confidence 99999999999 999999999 8876
No 269
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=2.7e-14 Score=98.06 Aligned_cols=70 Identities=24% Similarity=0.443 Sum_probs=59.4
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCc--EeeEEEEeeCCC
Q psy14193 138 SHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGE--IDNVRLIRDQHT 215 (239)
Q Consensus 138 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~--~~~~r~l~~~~~ 215 (239)
.++|||+|||+++++++|+++|++||+|..++++.+ ++|||||+|.+.++|.+ +++. .+.++.|++..+
T Consensus 5 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~----~~~~~~~~~g~~l~v~~a 75 (88)
T 1wf0_A 5 SSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQS----LCGEDLIIKGISVHISNA 75 (88)
T ss_dssp CCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHH----TTTCEEEETTEEEEEECC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHH----HhcCCceeCCEEEEEEec
Confidence 579999999999999999999999999999998865 68999999999997753 3444 447888888765
Q ss_pred C
Q psy14193 216 N 216 (239)
Q Consensus 216 ~ 216 (239)
.
T Consensus 76 ~ 76 (88)
T 1wf0_A 76 E 76 (88)
T ss_dssp C
T ss_pred C
Confidence 3
No 270
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.48 E-value=5.5e-14 Score=99.84 Aligned_cols=85 Identities=12% Similarity=0.212 Sum_probs=67.4
Q ss_pred ceeEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEEE
Q psy14193 23 KLKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVR 102 (239)
Q Consensus 23 ~~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV~ 102 (239)
++.|||+++...... ......++|+++|++||+|.+|++ + ..+++++|||||+
T Consensus 15 ~~~l~V~nLp~~~~~--------~~~~t~~~l~~~F~~~G~v~~v~i---~----------------~~~g~~~G~afV~ 67 (105)
T 2nlw_A 15 DSVIVVDNVPQVGPD--------RLEKLKNVIHKIFSKFGKITNDFY---P----------------EEDGKTKGYIFLE 67 (105)
T ss_dssp CSEEEEESCCCCCTT--------TTTHHHHHHHHHHGGGSCEEEEEC---C----------------CBTTBSCCEEEEE
T ss_pred CCEEEEeCCCcchhh--------hhHHHHHHHHHHHhcCCCEEEEEe---e----------------CCCCCeeeEEEEE
Confidence 578999987654211 000123699999999999999984 1 2467788999999
Q ss_pred eCCHHHHHHHHH-hCCCccCCe-eEEEeccCCCC
Q psy14193 103 FKNLESVEKALE-MNGHVIDEH-TIRVDKALTTT 134 (239)
Q Consensus 103 f~~~e~a~~Ai~-~~~~~l~g~-~i~v~~~~~~~ 134 (239)
|.+.++|++|+. +||..+.|+ +|.|.++....
T Consensus 68 f~~~~~A~~Ai~~l~g~~~~g~~~l~V~~a~~~~ 101 (105)
T 2nlw_A 68 YASPAHAVDAVKNADGYKLDKQHTFRVNLFTDFD 101 (105)
T ss_dssp ECSSSHHHHHHHHCSSEECSTTCEEEEECSCCCC
T ss_pred ECCHHHHHHHHHHhCCcccCCCceEEEEEcchHh
Confidence 999999999999 999999998 99999987553
No 271
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=7.5e-14 Score=99.65 Aligned_cols=85 Identities=15% Similarity=0.105 Sum_probs=71.2
Q ss_pred cceeEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccCCc-eeEEEEeecccccCCCccceeeecccccCCCCcceEE
Q psy14193 22 SKLKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGE-VETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAY 100 (239)
Q Consensus 22 ~~~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~-I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~af 100 (239)
..++|||+.+......+ +|+++|++||+ |.+|.+ +..+..++.++||||
T Consensus 7 ~~~~l~V~nLp~~~t~~--------------~l~~~f~~~G~~v~~v~i----------------~~~~~~~g~~~g~af 56 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKRE--------------EILEEIAKVTEGVLDVIV----------------YASAADKMKNRGFAF 56 (109)
T ss_dssp CSEEEEEECCCTTSCHH--------------HHHHHHHHHSTTEEEEEC----------------CSSSCTTTTTCCEEE
T ss_pred CCCEEEEeCCCCcCCHH--------------HHHHHHHHhcCCceEEEE----------------EccCCCCCCcCcEEE
Confidence 56789999876554444 99999999998 999884 125667788999999
Q ss_pred EEeCCHHHHHHHHH-hC--CCccCCeeEEEeccCCCCCC
Q psy14193 101 VRFKNLESVEKALE-MN--GHVIDEHTIRVDKALTTTKS 136 (239)
Q Consensus 101 V~f~~~e~a~~Ai~-~~--~~~l~g~~i~v~~~~~~~~~ 136 (239)
|+|.+.++|++|++ ++ +..+.|+.|.|.++.+....
T Consensus 57 V~f~~~~~A~~A~~~l~~g~~~~~g~~l~V~~a~~~~~~ 95 (109)
T 2dis_A 57 VEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDV 95 (109)
T ss_dssp EEESSHHHHHHHHTTTTTCCSCBTTBCCEEEESCSSCST
T ss_pred EEecCHHHHHHHHHHhhCCCceecCCeEEEEEcCCCCCc
Confidence 99999999999999 86 58999999999999877653
No 272
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=5.7e-14 Score=99.29 Aligned_cols=82 Identities=13% Similarity=0.102 Sum_probs=68.9
Q ss_pred cccceeEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceE
Q psy14193 20 LMSKLKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNA 99 (239)
Q Consensus 20 ~~~~~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~a 99 (239)
......|||+++......+ +|+++|++||.| +|++ +.+. +++++|||
T Consensus 12 ~~~~~~l~V~nLp~~~te~--------------~l~~~F~~~G~~-~v~i-----------------~~d~-~g~~~G~a 58 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATEN--------------DIYNFFSPLNPM-RVHI-----------------EIGP-DGRVTGEA 58 (102)
T ss_dssp CSSSCEEEEESCCTTCCHH--------------HHHHSSCSCCCS-EEEE-----------------EESS-SSCEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHH--------------HHHHHHHHcCce-EEEE-----------------EECC-CCCEeeEE
Confidence 4467889999887765554 999999999955 8873 4454 67888999
Q ss_pred EEEeCCHHHHHHHHHhCCCccCCeeEEEeccCCCC
Q psy14193 100 YVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTT 134 (239)
Q Consensus 100 fV~f~~~e~a~~Ai~~~~~~l~g~~i~v~~~~~~~ 134 (239)
||+|.+.++|++|+++|+..+.++.|.|.++.+..
T Consensus 59 fV~F~~~~~a~~Al~~~~~~~~gr~i~V~~~~~~~ 93 (102)
T 1wez_A 59 DVEFATHEDAVAAMAKDKANMQHRYVELFLNSTAG 93 (102)
T ss_dssp EEECSSSHHHHHHHTTSSCCSSSSCCEEEEECCCC
T ss_pred EEEECCHHHHHHHHHhCCCeECCcEEEEEECCCCC
Confidence 99999999999999999999999999999887654
No 273
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.48 E-value=7.1e-14 Score=96.62 Aligned_cols=82 Identities=17% Similarity=0.252 Sum_probs=68.8
Q ss_pred cceeEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEE
Q psy14193 22 SKLKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYV 101 (239)
Q Consensus 22 ~~~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV 101 (239)
.+..|||+.+...... ++|+++|++||+|.+|++ ++ +++.++|||||
T Consensus 7 ~~~~l~V~nlp~~~t~--------------~~l~~~f~~~G~v~~~~i-----------------~~--~~g~~~g~afV 53 (92)
T 2dgv_A 7 GACQIFVRNLPFDFTW--------------KMLKDKFNECGHVLYADI-----------------KM--ENGKSKGCGVV 53 (92)
T ss_dssp SCCEEEECSCCTTCCH--------------HHHHHHHHTTSCEEEEEE-----------------EE--SSSCEEEEEEE
T ss_pred CCcEEEEeCCCCCCCH--------------HHHHHHHHhcCCEEEEEE-----------------Ec--cCCCcceEEEE
Confidence 4678888877655444 499999999999999985 11 35677899999
Q ss_pred EeCCHHHHHHHHH-hCCCccCCeeEEEeccCCCCCC
Q psy14193 102 RFKNLESVEKALE-MNGHVIDEHTIRVDKALTTTKS 136 (239)
Q Consensus 102 ~f~~~e~a~~Ai~-~~~~~l~g~~i~v~~~~~~~~~ 136 (239)
+|.+.++|++|++ +|+..+.|+.|.|.++.+....
T Consensus 54 ~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~~~ 89 (92)
T 2dgv_A 54 KFESPEVAERACRMMNGMKLSGREIDVRIDRNASGP 89 (92)
T ss_dssp EESSHHHHHHHHHHHTTCCBTTBCCCCEECSCCSSC
T ss_pred EECCHHHHHHHHHHhCCCEECCcEEEEEEcCCCCCC
Confidence 9999999999999 9999999999999999877543
No 274
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.48 E-value=4.5e-14 Score=104.92 Aligned_cols=68 Identities=28% Similarity=0.436 Sum_probs=61.2
Q ss_pred HHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEEEeCCHHHHHHHHH-hCCCccCCeeEEEecc
Q psy14193 52 SSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALE-MNGHVIDEHTIRVDKA 130 (239)
Q Consensus 52 ~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV~f~~~e~a~~Ai~-~~~~~l~g~~i~v~~~ 130 (239)
++|+++|++||+|.+|+ ++.+..++.++|||||+|.+.++|++|++ +|+..+.|++|.|.++
T Consensus 62 ~~L~~~F~~~G~i~~v~-----------------i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a 124 (135)
T 2lea_A 62 DTLRRVFEKYGRVGDVY-----------------IPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 124 (135)
T ss_dssp HHHHHHHGGGSCCSEEE-----------------CCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEEC
T ss_pred HHHHHHHHhcCCEEEEE-----------------EEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 59999999999999988 34566678889999999999999999999 9999999999999999
Q ss_pred CCCCCC
Q psy14193 131 LTTTKS 136 (239)
Q Consensus 131 ~~~~~~ 136 (239)
.+....
T Consensus 125 ~~~~~~ 130 (135)
T 2lea_A 125 RYGRPP 130 (135)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 877554
No 275
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=8.4e-14 Score=98.39 Aligned_cols=82 Identities=16% Similarity=0.280 Sum_probs=68.0
Q ss_pred cceeEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEE
Q psy14193 22 SKLKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYV 101 (239)
Q Consensus 22 ~~~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV 101 (239)
..+.|||+.+......+ +|+++|++||+|.+|++ +.+. +.++|||||
T Consensus 14 ~~~~l~V~nlp~~~t~~--------------~l~~~F~~~G~i~~v~i-----------------~~~~--~~~~g~afV 60 (103)
T 2cqi_A 14 QPRTLYVGNLSRDVTEV--------------LILQLFSQIGPCKSCKM-----------------ITEH--TSNDPYCFV 60 (103)
T ss_dssp CCCEEEEESCCTTCCHH--------------HHHHHHHHHSCEEEEEE-----------------ECCC--CSSCCEEEE
T ss_pred CCCEEEEeCCCccCCHH--------------HHHHHHHhcCCEeEEEE-----------------EecC--CCCCCEEEE
Confidence 46789999876654444 99999999999999984 2222 235799999
Q ss_pred EeCCHHHHHHHHH-hCCCccCCeeEEEeccCCCCCC
Q psy14193 102 RFKNLESVEKALE-MNGHVIDEHTIRVDKALTTTKS 136 (239)
Q Consensus 102 ~f~~~e~a~~Ai~-~~~~~l~g~~i~v~~~~~~~~~ 136 (239)
+|.+.++|++|++ +|+..+.|+.|.|.++.++...
T Consensus 61 ~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 96 (103)
T 2cqi_A 61 EFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQ 96 (103)
T ss_dssp EESSHHHHHHHHHHHTTEEETTEEEEEEECCCTTCC
T ss_pred EECCHHHHHHHHHHhCCCCcCCCeEEEEECCCCccc
Confidence 9999999999999 9999999999999999876543
No 276
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=5.6e-14 Score=99.42 Aligned_cols=83 Identities=11% Similarity=0.194 Sum_probs=67.8
Q ss_pred ccccccceeEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCc
Q psy14193 17 NRNLMSKLKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTN 96 (239)
Q Consensus 17 n~~~~~~~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~ 96 (239)
.|..-....|||+++......+ +|+++|++||+|.+|++ ++ .+
T Consensus 10 ~~~~~~~~~LfV~nLp~~vte~--------------dL~~lF~~fG~V~~v~i-----------------~~------~k 52 (105)
T 1sjq_A 10 HGSGVPSRVIHIRKLPIDVTEG--------------EVISLGLPFGKVTNLLM-----------------LK------GK 52 (105)
T ss_dssp --CCCCCCEEEECSCCTTSCHH--------------HHHHHHHHHCCEEEEEE-----------------ET------TT
T ss_pred cCCCCCCCEEEEeCCCCCCCHH--------------HHHHHHHhcCCEEEEEE-----------------Ec------CC
Confidence 4556677899999887665544 99999999999999985 11 26
Q ss_pred ceEEEEeCCHHHHHHHHH-hC--CCccCCeeEEEeccCCCCCC
Q psy14193 97 MNAYVRFKNLESVEKALE-MN--GHVIDEHTIRVDKALTTTKS 136 (239)
Q Consensus 97 G~afV~f~~~e~a~~Ai~-~~--~~~l~g~~i~v~~~~~~~~~ 136 (239)
|||||+|.+.++|++|++ ++ +..+.|++|.|.++.++...
T Consensus 53 GfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~~~~~~ 95 (105)
T 1sjq_A 53 NQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKELK 95 (105)
T ss_dssp TEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCCSSSSCC
T ss_pred CEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcCCCCCC
Confidence 999999999999999999 76 47899999999999877644
No 277
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.47 E-value=1.3e-14 Score=96.52 Aligned_cols=62 Identities=21% Similarity=0.330 Sum_probs=55.6
Q ss_pred HHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEEEeCCHHHHHHHHHhCCCccCCeeEEEecc
Q psy14193 52 SSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKA 130 (239)
Q Consensus 52 ~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV~f~~~e~a~~Ai~~~~~~l~g~~i~v~~~ 130 (239)
++|+++|++||+|.+|+ +..++.++.++|||||+|.+.++|++|++.++..+.|+.|.|.++
T Consensus 14 ~~l~~~F~~~G~i~~v~-----------------i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 14 EKIREYFGGFGEVESIE-----------------LPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVA 75 (75)
T ss_dssp HHHHHHHHHHSCCSEEC-----------------CCCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBTTBCCCEEEC
T ss_pred HHHHHHHHhcCCeEEEE-----------------EEecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEC
Confidence 59999999999999987 345667788899999999999999999998899999999998764
No 278
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.47 E-value=3.5e-14 Score=98.76 Aligned_cols=79 Identities=10% Similarity=0.166 Sum_probs=66.8
Q ss_pred ceeEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEEE
Q psy14193 23 KLKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVR 102 (239)
Q Consensus 23 ~~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV~ 102 (239)
...|||+.+......+ +|+++|++||.|.++. ++.+..+++++|||||+
T Consensus 15 ~~~l~V~nlp~~~t~~--------------~l~~~F~~~G~i~~~~-----------------~~~~~~~g~~~g~afV~ 63 (95)
T 2ek1_A 15 PTVIKVQNMPFTVSID--------------EILDFFYGYQVIPGSV-----------------CLKYNEKGMPTGEAMVA 63 (95)
T ss_dssp CEEEEEECCCTTCCHH--------------HHHHHTTTSCBCTTCC-----------------EEEECTTSCEEEEEEEE
T ss_pred CCEEEEeCCCCCCCHH--------------HHHHHHHhcCCccceE-----------------EEEeCCCCCEeeEEEEE
Confidence 4788888776554444 9999999999998766 34566778889999999
Q ss_pred eCCHHHHHHHHH-hCCCccCCeeEEEeccCC
Q psy14193 103 FKNLESVEKALE-MNGHVIDEHTIRVDKALT 132 (239)
Q Consensus 103 f~~~e~a~~Ai~-~~~~~l~g~~i~v~~~~~ 132 (239)
|.+.++|++|++ +|+..+.|++|.|.++..
T Consensus 64 f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~s 94 (95)
T 2ek1_A 64 FESRDEATAAVIDLNDRPIGSRKVKLSGPSS 94 (95)
T ss_dssp ESSHHHHHHHHHHHTTCEETTEECEEECCC-
T ss_pred ECCHHHHHHHHHHhCCCeECCcEEEEEeccC
Confidence 999999999999 999999999999998753
No 279
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.47 E-value=2e-14 Score=106.21 Aligned_cols=82 Identities=17% Similarity=0.307 Sum_probs=70.5
Q ss_pred cceeEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccCCceeE--EEEeecccccCCCccceeeecccccCCCCcceE
Q psy14193 22 SKLKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGEVET--VRFRSVPVADITLPRKACIKMNKVHEKRTNMNA 99 (239)
Q Consensus 22 ~~~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~I~~--v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~a 99 (239)
..++|||+++......+ +|+++|++||.|.+ |+ +++|+.|++++|||
T Consensus 22 ~~~~lfV~nL~~~~te~--------------~L~~~F~~~G~v~~~~v~-----------------i~~d~~tg~~rG~a 70 (131)
T 2m2b_A 22 ANDTIILRNLNPHSTMD--------------SILGALAPYAVLSSSNVR-----------------VIKDKQTQLNRGFA 70 (131)
T ss_dssp CCCEEEECSCCTTCCSH--------------HHHHHHGGGCCCCTTTEE-----------------CCBCSSSSSBCSCE
T ss_pred CCCEEEEeCCCCCCCHH--------------HHHHHHHHhCCcceeeEE-----------------EEEcCCCCCcceEE
Confidence 45789999876654443 99999999999976 77 56677889999999
Q ss_pred EEEeCCHHHHHHHHH-hCCC----ccCCeeEEEeccCCCCC
Q psy14193 100 YVRFKNLESVEKALE-MNGH----VIDEHTIRVDKALTTTK 135 (239)
Q Consensus 100 fV~f~~~e~a~~Ai~-~~~~----~l~g~~i~v~~~~~~~~ 135 (239)
||+|.+. +|.+|+. +|+. .+.|+.|.|.++.+...
T Consensus 71 FV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~l~V~~a~~~~~ 110 (131)
T 2m2b_A 71 FIQLSTI-EAAQLLQILQALHPPLTIDGKTINVEFAKGSKR 110 (131)
T ss_dssp EEECCHH-HHHHHHHHHTTCCCSCCGGGCCCCCEECCCSCC
T ss_pred EEEECCH-HHHHHHHHhcCCCCCccCCCEEEEEEECCCCCC
Confidence 9999999 9999999 9999 99999999999987644
No 280
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=1.3e-13 Score=97.49 Aligned_cols=83 Identities=16% Similarity=0.222 Sum_probs=69.2
Q ss_pred cceeEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEE
Q psy14193 22 SKLKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYV 101 (239)
Q Consensus 22 ~~~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV 101 (239)
..+.|||+++...... ++|+++|++||+|.+|++ +.++.++.++|||||
T Consensus 14 ~~~~l~v~nlp~~~t~--------------~~l~~~F~~~G~i~~v~i-----------------~~~~~~g~~~g~afV 62 (103)
T 2cqg_A 14 KTSDLIVLGLPWKTTE--------------QDLKEYFSTFGEVLMVQV-----------------KKDLKTGHSKGFGFV 62 (103)
T ss_dssp CCCCEEEESCCSSCCH--------------HHHHHHHGGGSCEEEEEE-----------------EECSSSCSEEEEEEE
T ss_pred CCCEEEEEcCCCcCCH--------------HHHHHHHHhcCCeEEEEE-----------------EecCCCCCccceEEE
Confidence 4567888876555443 499999999999999883 556677889999999
Q ss_pred EeCCHHHHHHHHHhCCCccCCeeEEEeccCCCCCC
Q psy14193 102 RFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKS 136 (239)
Q Consensus 102 ~f~~~e~a~~Ai~~~~~~l~g~~i~v~~~~~~~~~ 136 (239)
+|.+.++|++|++ ++..+.|+.|.|.++.++...
T Consensus 63 ~f~~~~~a~~A~~-~~~~~~g~~l~v~~a~~~~~~ 96 (103)
T 2cqg_A 63 RFTEYETQVKVMS-QRHMIDGRWCDCKLPNSKQSQ 96 (103)
T ss_dssp EESSHHHHHHHHH-SCEEETTEEEEEECCCTTCCC
T ss_pred EECCHHHHHHHHH-cCCeeCCeEEEEEecCCCCcC
Confidence 9999999999998 567899999999999877543
No 281
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.46 E-value=5.2e-14 Score=100.93 Aligned_cols=85 Identities=11% Similarity=0.131 Sum_probs=66.4
Q ss_pred ccccccccceeEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccCC-ceeEEEEeecccccCCCccceeeecccccCC
Q psy14193 15 TQNRNLMSKLKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYG-EVETVRFRSVPVADITLPRKACIKMNKVHEK 93 (239)
Q Consensus 15 ~~n~~~~~~~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G-~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~ 93 (239)
.+....-.+.+|||+++......+ +|+++|++|| +|..+++ . ++
T Consensus 20 ~~~~~p~~~~~l~VgnLp~~~te~--------------dL~~~F~~~G~~v~~v~i---~------------------~~ 64 (111)
T 2jvr_A 20 HMSKLPAKRYRITMKNLPEGCSWQ--------------DLKDLARENSLETTFSSV---N------------------TR 64 (111)
T ss_dssp -----CCCCEEEEEECSSCCCCHH--------------HHHHHHHHHTCCCSEEEC---S------------------SC
T ss_pred hcCCCCCCCCEEEEECCCCCCCHH--------------HHHHHHHHhCCeeEEEEE---E------------------cC
Confidence 444445567899999876665544 9999999999 8999873 1 12
Q ss_pred CCcceEEEEeCCHHHHHHHHH-hCCCccCCeeEEEeccCCCC
Q psy14193 94 RTNMNAYVRFKNLESVEKALE-MNGHVIDEHTIRVDKALTTT 134 (239)
Q Consensus 94 ~~~G~afV~f~~~e~a~~Ai~-~~~~~l~g~~i~v~~~~~~~ 134 (239)
.++|||||+|.+.++|++|++ +|+..+.|+.|.|.++...+
T Consensus 65 ~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~~~p 106 (111)
T 2jvr_A 65 DFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDDNPP 106 (111)
T ss_dssp SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESCC--
T ss_pred CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCCC
Confidence 467999999999999999999 99999999999999987553
No 282
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.46 E-value=9.2e-14 Score=101.30 Aligned_cols=72 Identities=14% Similarity=0.207 Sum_probs=66.1
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeCCCC
Q psy14193 137 NSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTN 216 (239)
Q Consensus 137 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~~~~ 216 (239)
+.++|||+|+ ++|+++|+++|++||+|.++.+. .++|||||+|.+.++|.+|+..++|..+.++.|+|.++.
T Consensus 38 ~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~ 109 (121)
T 2bz2_A 38 KGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIAR 109 (121)
T ss_dssp CCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECC
T ss_pred CCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeC
Confidence 4789999996 69999999999999999999885 468999999999999999999999999999999998764
No 283
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.46 E-value=1.2e-13 Score=101.03 Aligned_cols=82 Identities=13% Similarity=0.245 Sum_probs=67.5
Q ss_pred cceeEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEE
Q psy14193 22 SKLKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYV 101 (239)
Q Consensus 22 ~~~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV 101 (239)
.+..|||+.+...... ++|+++|++||+|.+|++ ..+. ++.++|||||
T Consensus 34 ~~~~l~V~nlp~~~t~--------------~~l~~~F~~~G~v~~v~i-----------------~~~~-~g~~~g~afV 81 (124)
T 2kt5_A 34 TGAKLLVSNLDFGVSD--------------ADIQELFAEFGTLKKAAV-----------------DYDR-SGRSLGTADV 81 (124)
T ss_dssp SCEEEEEESCCSSCCH--------------HHHHHHHHTTSCCSEEEE-----------------ECCS-SSSCCSEEEE
T ss_pred CCCEEEEeCCCCCCCH--------------HHHHHHHHhcCCeeEEEE-----------------EECC-CCCEeeEEEE
Confidence 3467777765444333 499999999999999984 3444 6778899999
Q ss_pred EeCCHHHHHHHHH-hCCCccCCeeEEEeccCCCCC
Q psy14193 102 RFKNLESVEKALE-MNGHVIDEHTIRVDKALTTTK 135 (239)
Q Consensus 102 ~f~~~e~a~~Ai~-~~~~~l~g~~i~v~~~~~~~~ 135 (239)
+|.+.++|++|++ +|+..+.|+.|.|.++.+...
T Consensus 82 ~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 116 (124)
T 2kt5_A 82 HFERRADALKAMKQYKGVPLDGRPMDIQLVASQID 116 (124)
T ss_dssp EESSHHHHHHHHHHHTTEESSSCEEEEEEECCTTC
T ss_pred EECCHHHHHHHHHHcCCCEECCcEEEEEEeCCCCC
Confidence 9999999999999 999999999999999887643
No 284
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.46 E-value=1.1e-13 Score=105.14 Aligned_cols=67 Identities=18% Similarity=0.307 Sum_probs=60.9
Q ss_pred HHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEEEeCCHHHHHHHHH-hCCCccCCeeEEEecc
Q psy14193 52 SSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALE-MNGHVIDEHTIRVDKA 130 (239)
Q Consensus 52 ~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV~f~~~e~a~~Ai~-~~~~~l~g~~i~v~~~ 130 (239)
++|+++|++||+|.+|++ +.+..++.++|||||+|.+.++|++|++ +|+..+.|+.|.|.++
T Consensus 54 ~~l~~~F~~~G~i~~v~i-----------------~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 116 (156)
T 1h2v_Z 54 EQIYELFSKSGDIKKIIM-----------------GLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWD 116 (156)
T ss_dssp HHHHHHHGGGSCEEEEEE-----------------EECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEE
T ss_pred HHHHHHHHhcCCeEEEEE-----------------EecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 599999999999999883 5566788889999999999999999999 9999999999999999
Q ss_pred CCCCC
Q psy14193 131 LTTTK 135 (239)
Q Consensus 131 ~~~~~ 135 (239)
.+...
T Consensus 117 ~~~~~ 121 (156)
T 1h2v_Z 117 AGFKE 121 (156)
T ss_dssp SCCCT
T ss_pred CCCCC
Confidence 87654
No 285
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=1.6e-13 Score=98.67 Aligned_cols=81 Identities=15% Similarity=0.219 Sum_probs=67.4
Q ss_pred ceeEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEEE
Q psy14193 23 KLKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVR 102 (239)
Q Consensus 23 ~~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV~ 102 (239)
.+.|||+++......+ +|+++|++||+|.+|++ +.+. ++.++|||||+
T Consensus 15 ~~~l~V~nlp~~~~~~--------------~l~~~f~~~G~i~~~~i-----------------~~~~-~g~~~g~afV~ 62 (114)
T 2do0_A 15 GSTVFVANLDYKVGWK--------------KLKEVFSMAGVVVRADI-----------------LEDK-DGKSRGIGTVT 62 (114)
T ss_dssp CSCEEEESCCTTCCHH--------------HHHHHHTTTSCEEEEEE-----------------EECT-TCSEEEEEEEE
T ss_pred CCEEEEeCCCCCCCHH--------------HHHHHHHhcCCeEEEEE-----------------EECC-CCCeeeEEEEE
Confidence 5688998776554443 99999999999999984 3333 36778999999
Q ss_pred eCCHHHHHHHHH-hCCCccCCeeEEEeccCCCCC
Q psy14193 103 FKNLESVEKALE-MNGHVIDEHTIRVDKALTTTK 135 (239)
Q Consensus 103 f~~~e~a~~Ai~-~~~~~l~g~~i~v~~~~~~~~ 135 (239)
|.+.++|++|++ +|+..+.|+.|.|.++.....
T Consensus 63 f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 96 (114)
T 2do0_A 63 FEQSIEAVQAISMFNGQLLFDRPMHVKMDERALP 96 (114)
T ss_dssp ESSHHHHHHHHHHHTTCEETTEECEEEECSCCCC
T ss_pred ECCHHHHHHHHHHhCCCEeCCCEEEEEEcccCCC
Confidence 999999999999 999999999999999875543
No 286
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.46 E-value=1e-13 Score=103.24 Aligned_cols=79 Identities=20% Similarity=0.307 Sum_probs=66.7
Q ss_pred ccceeEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEE
Q psy14193 21 MSKLKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAY 100 (239)
Q Consensus 21 ~~~~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~af 100 (239)
-..+.|||+.+...... ++|+++|++||+|.+|+ +..++.+++++||||
T Consensus 61 ~~~~~l~v~nlp~~~~~--------------~~l~~~f~~~G~i~~v~-----------------i~~~~~~~~~~g~af 109 (140)
T 2ku7_A 61 TTKRVLYVGGLAEEVDD--------------KVLHAAFIPFGDITDIQ-----------------IPLDYETEKHRGFAF 109 (140)
T ss_dssp SSCCEEEEECCCTTCCH--------------HHHHHHHGGGSCEEEEE-----------------CCCCTTTCCCCSEEE
T ss_pred CCCcEEEEEeCCCCCCH--------------HHHHHHHHhcCCEEEEE-----------------EeecCCCCCcCcEEE
Confidence 35678888876555443 49999999999999988 355667788999999
Q ss_pred EEeCCHHHHHHHHH-hCCCccCCeeEEEecc
Q psy14193 101 VRFKNLESVEKALE-MNGHVIDEHTIRVDKA 130 (239)
Q Consensus 101 V~f~~~e~a~~Ai~-~~~~~l~g~~i~v~~~ 130 (239)
|+|.+.++|++|++ +|+..+.|+.|.|.++
T Consensus 110 V~f~~~~~a~~A~~~l~g~~~~g~~l~v~~A 140 (140)
T 2ku7_A 110 VEFELAEDAAAAIDNMNESELFGRTIRVNLA 140 (140)
T ss_dssp EEESCHHHHHHHHHHSTEEEETTEEEEEEC-
T ss_pred EEECCHHHHHHHHHHhCCCEECCEEEEEEeC
Confidence 99999999999998 9999999999999875
No 287
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=2.2e-13 Score=97.25 Aligned_cols=82 Identities=16% Similarity=0.314 Sum_probs=68.1
Q ss_pred ccceeEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEE
Q psy14193 21 MSKLKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAY 100 (239)
Q Consensus 21 ~~~~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~af 100 (239)
...+.|||+++......+ +|+++|++||+|.+|++ . .++.++||||
T Consensus 20 ~~~~~l~V~nLp~~~t~~--------------~l~~~F~~~G~v~~~~i---~-----------------~~~~~~g~af 65 (109)
T 1x4a_A 20 NNDCRIYVGNLPPDIRTK--------------DIEDVFYKYGAIRDIDL---K-----------------NRRGGPPFAF 65 (109)
T ss_dssp CCSSEEEEESCCTTCCHH--------------HHHHHHGGGSCEEEEEE---C-----------------CSSSSSCCEE
T ss_pred CCCCEEEEeCCCCCCCHH--------------HHHHHHHhcCCeEEEEE---E-----------------ECCCCCcEEE
Confidence 356789998876554443 99999999999999985 1 1244689999
Q ss_pred EEeCCHHHHHHHHH-hCCCccCCeeEEEeccCCCCCC
Q psy14193 101 VRFKNLESVEKALE-MNGHVIDEHTIRVDKALTTTKS 136 (239)
Q Consensus 101 V~f~~~e~a~~Ai~-~~~~~l~g~~i~v~~~~~~~~~ 136 (239)
|+|.+.++|++|++ +|+..+.|+.|.|.++.+....
T Consensus 66 V~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 102 (109)
T 1x4a_A 66 VEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGT 102 (109)
T ss_dssp EEESCHHHHHHHHHHHTTCEETTEECEEECCCCCCCC
T ss_pred EEECCHHHHHHHHHHcCCCEECCeEEEEEEcccCCCC
Confidence 99999999999998 9999999999999999876543
No 288
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.45 E-value=1.2e-13 Score=101.38 Aligned_cols=83 Identities=12% Similarity=0.164 Sum_probs=65.7
Q ss_pred cceeEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEE
Q psy14193 22 SKLKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYV 101 (239)
Q Consensus 22 ~~~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV 101 (239)
..+.|||+++......+ +-.+.|.++|++||+|.+|.+ . .+++++|||||
T Consensus 28 p~~~LfV~nL~~~~~e~----------~L~~~L~~~F~~~G~I~~v~i---~-----------------~~~~~rG~aFV 77 (127)
T 2a3j_A 28 PSQVVLITNINPEVPKE----------KLQALLYALASSQGDILDIVV---D-----------------LSDDNSGKAYI 77 (127)
T ss_dssp CCSEEEEESCCTTSCHH----------HHHHHHHHHHHHHSCEEEEEE---C-----------------CCCSSCCCEEE
T ss_pred CCCEEEEeCCCCCCCHH----------HHHHHHHHHhccCCCeEEEEe---c-----------------cCCCcCCEEEE
Confidence 45789999876542222 011246789999999999874 1 24677899999
Q ss_pred EeCCHHHHHHHHH-hCCCccCCeeEEEeccCCCC
Q psy14193 102 RFKNLESVEKALE-MNGHVIDEHTIRVDKALTTT 134 (239)
Q Consensus 102 ~f~~~e~a~~Ai~-~~~~~l~g~~i~v~~~~~~~ 134 (239)
+|.+.++|+.|++ +||..+.|++|.|.++.++.
T Consensus 78 ~F~~~~~A~~Ai~~lng~~l~gr~l~V~~a~~~~ 111 (127)
T 2a3j_A 78 VFATQESAQAFVEAFQGYPFQGNPLVITFSETPQ 111 (127)
T ss_dssp EESSHHHHHHHHHHSTTCCCTTSCCEEEECCCCC
T ss_pred EECCHHHHHHHHHHHCCCEeCCCEEEEEEccCcc
Confidence 9999999999999 99999999999999998764
No 289
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=4.9e-14 Score=101.61 Aligned_cols=82 Identities=12% Similarity=0.096 Sum_probs=69.4
Q ss_pred cccceeEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccCCce-eEEEEeecccccCCCccceeeecccccCCCCcce
Q psy14193 20 LMSKLKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGEV-ETVRFRSVPVADITLPRKACIKMNKVHEKRTNMN 98 (239)
Q Consensus 20 ~~~~~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~I-~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~ 98 (239)
.-..+.|||+++......+ +|+++|++||.| .+|++ +.+. +++++||
T Consensus 12 ~~~~~~l~V~nLp~~~t~~--------------~l~~~F~~~g~v~~~v~i-----------------~~d~-~g~~~G~ 59 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKM--------------DVLQFLEGIPVDENAVHV-----------------LVDN-NGQGLGQ 59 (114)
T ss_dssp CSCCCEEEEESCCTTSCHH--------------HHHHHTTTSCCCSTTEEE-----------------CCCT-TSSCSSC
T ss_pred CCCccEEEEeCcCCcCCHH--------------HHHHHHHhCCCcCCeEEE-----------------EECC-CCCcceE
Confidence 3456789999876665554 999999999999 78873 4455 7788899
Q ss_pred EEEEeCCHHHHHHHHHhCCCccCCeeEEEeccCCC
Q psy14193 99 AYVRFKNLESVEKALEMNGHVIDEHTIRVDKALTT 133 (239)
Q Consensus 99 afV~f~~~e~a~~Ai~~~~~~l~g~~i~v~~~~~~ 133 (239)
|||+|.+.++|++|+++|+..+.|+.|.|.++.+.
T Consensus 60 afV~F~~~~~a~~Al~~~~~~~~gr~i~v~~a~~~ 94 (114)
T 2cpy_A 60 ALVQFKNEDDARKSERLHRKKLNGREAFVHVVTLE 94 (114)
T ss_dssp EEEECSSHHHHHHHGGGCSEEETTEEEEEEEECHH
T ss_pred EEEEECCHHHHHHHHHhCCCccCCeEEEEEECCHH
Confidence 99999999999999999999999999999988654
No 290
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.45 E-value=1.7e-13 Score=97.30 Aligned_cols=66 Identities=15% Similarity=0.209 Sum_probs=57.3
Q ss_pred hHHHHHHhcccCCceeEEEEeecccccCCCccceeeeccccc-CCCCcceEEEEeCCHHHHHHHHH-hCCCccCCeeEEE
Q psy14193 50 ALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVH-EKRTNMNAYVRFKNLESVEKALE-MNGHVIDEHTIRV 127 (239)
Q Consensus 50 r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~-t~~~~G~afV~f~~~e~a~~Ai~-~~~~~l~g~~i~v 127 (239)
..++|++.|++||+|.+|.+ .+++. +++++|||||+|.+.++|.+|++ |||..+.|+.|.|
T Consensus 26 ~~~dl~~~f~~~G~V~~v~i-----------------~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~i~v 88 (105)
T 2pe8_A 26 LEVETKEECEKYGKVGKCVI-----------------FEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVVKA 88 (105)
T ss_dssp CHHHHHHHGGGGSCEEEEEE-----------------EECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred HHHHHHHHHHhcCCEEEEEE-----------------ecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcEEEE
Confidence 34799999999999999984 33333 35788999999999999999999 9999999999999
Q ss_pred eccCC
Q psy14193 128 DKALT 132 (239)
Q Consensus 128 ~~~~~ 132 (239)
.++.+
T Consensus 89 ~~a~~ 93 (105)
T 2pe8_A 89 CFYNL 93 (105)
T ss_dssp EECCH
T ss_pred EEcCH
Confidence 98864
No 291
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.45 E-value=1.2e-13 Score=106.14 Aligned_cols=83 Identities=19% Similarity=0.243 Sum_probs=68.2
Q ss_pred cceeEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEE
Q psy14193 22 SKLKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYV 101 (239)
Q Consensus 22 ~~~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV 101 (239)
.+..|||+++...... ++|+++|++||+|.+|.+ +.+..++.++|||||
T Consensus 71 ~~~~l~V~nLp~~~t~--------------~~L~~~F~~~G~i~~v~i-----------------~~~~~~g~~~g~afV 119 (165)
T 1rk8_A 71 EGWILFVTSIHEEAQE--------------DEIQEKFCDYGEIKNIHL-----------------NLDRRTGFSKGYALV 119 (165)
T ss_dssp -CEEEEEESCCTTCCH--------------HHHHHHHGGGSCEEEEEE-----------------EECTTTSSEEEEEEE
T ss_pred CCCEEEEeCCCCCCCH--------------HHHHHHhhcCCCEEEEEE-----------------EecCCCCcEeeEEEE
Confidence 3455777665544333 599999999999999884 556678888999999
Q ss_pred EeCCHHHHHHHHH-hCCCccCCeeEEEeccCCCCC
Q psy14193 102 RFKNLESVEKALE-MNGHVIDEHTIRVDKALTTTK 135 (239)
Q Consensus 102 ~f~~~e~a~~Ai~-~~~~~l~g~~i~v~~~~~~~~ 135 (239)
+|.+.++|++|++ +|+..|.|++|.|.++.+...
T Consensus 120 ~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 154 (165)
T 1rk8_A 120 EYETHKQALAAKEALNGAEIMGQTIQVDWCFVKGP 154 (165)
T ss_dssp EESSHHHHHHHHHHHTTCEETTEECEEEESEECC-
T ss_pred EECCHHHHHHHHHHhCCCEECCEEEEEEEecCCCC
Confidence 9999999999999 999999999999999987654
No 292
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.45 E-value=1.1e-13 Score=97.64 Aligned_cols=76 Identities=11% Similarity=0.172 Sum_probs=63.4
Q ss_pred cceeEEeehhhH-hhhhhcCCCcchhhchhHHHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEE
Q psy14193 22 SKLKVFLNIWKM-ALKLKMNPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAY 100 (239)
Q Consensus 22 ~~~~v~v~~~~~-~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~af 100 (239)
..+.|||+++.. ....+ +|+++|++||+|.+|++ +. .+||||
T Consensus 14 p~~~l~V~nLp~~~~te~--------------dL~~lF~~fG~V~~v~i---~~--------------------~kg~aF 56 (102)
T 1x4d_A 14 TRRVVHIMDFQRGKNLRY--------------QLLQLVEPFGVISNHLI---LN--------------------KINEAF 56 (102)
T ss_dssp CCCEEEEESCCCSSSHHH--------------HHHTTTGGGSCEEEEEE---CS--------------------SSSCEE
T ss_pred CCCEEEEeCCCCCcCCHH--------------HHHHHHHhcCCEEEEEE---Ec--------------------CCCEEE
Confidence 467899998876 54444 99999999999999985 11 258999
Q ss_pred EEeCCHHHHHHHHH-hCCC--ccCCeeEEEeccCCCC
Q psy14193 101 VRFKNLESVEKALE-MNGH--VIDEHTIRVDKALTTT 134 (239)
Q Consensus 101 V~f~~~e~a~~Ai~-~~~~--~l~g~~i~v~~~~~~~ 134 (239)
|+|.+.++|+.|++ +++. .+.|++|.|.++.+..
T Consensus 57 Vef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~~ 93 (102)
T 1x4d_A 57 IEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQKYK 93 (102)
T ss_dssp EEESSHHHHHHHHHHHHHSCCEETTEECEEEEECCCT
T ss_pred EEECCHHHHHHHHHHHcCCCceECCcEEEEEECCCCC
Confidence 99999999999999 8864 5899999999998654
No 293
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=1.3e-13 Score=98.52 Aligned_cols=81 Identities=17% Similarity=0.327 Sum_probs=66.9
Q ss_pred cccceeEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceE
Q psy14193 20 LMSKLKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNA 99 (239)
Q Consensus 20 ~~~~~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~a 99 (239)
....+.|||+.+...... ++|+++|++||+|.+|++ . .+. +.++|||
T Consensus 26 ~~~~~~l~V~nLp~~~te--------------~~l~~~F~~~G~i~~v~i---~--------------~~~--~~~kg~a 72 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFRD--------------PDLRQMFGQFGKILDVEI---I--------------FNE--RGSKGFG 72 (109)
T ss_dssp TTCCCEEEEESCCTTCCH--------------HHHHHHGGGTCCCSCEEE---C--------------CBT--TBCTTEE
T ss_pred CCCCCEEEEECCCCcCCH--------------HHHHHHHHhcCCEEEEEE---E--------------ECC--CCCceEE
Confidence 335678888877655444 399999999999999984 2 221 2367999
Q ss_pred EEEeCCHHHHHHHHH-hCCCccCCeeEEEeccCCC
Q psy14193 100 YVRFKNLESVEKALE-MNGHVIDEHTIRVDKALTT 133 (239)
Q Consensus 100 fV~f~~~e~a~~Ai~-~~~~~l~g~~i~v~~~~~~ 133 (239)
||+|.+.++|++|++ +|+..+.|+.|.|.++.++
T Consensus 73 fV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 107 (109)
T 2err_A 73 FVTFENSADADRAREKLHGTVVEGRKIEVNNATAR 107 (109)
T ss_dssp EEECCCSHHHHHHHHHHTTCEETTEECEEEECCCS
T ss_pred EEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCC
Confidence 999999999999999 9999999999999999876
No 294
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=2.8e-13 Score=97.49 Aligned_cols=81 Identities=15% Similarity=0.347 Sum_probs=67.2
Q ss_pred ccceeEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEE
Q psy14193 21 MSKLKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAY 100 (239)
Q Consensus 21 ~~~~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~af 100 (239)
.....|||+.+......+ +|+++|++||+|.+|++ +.+. ++.++||||
T Consensus 23 ~~~~~l~V~nlp~~~t~~--------------~l~~~F~~~G~i~~~~i-----------------~~~~-~g~~~g~af 70 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQ--------------ELENMLKPFGQVISTRI-----------------LRDS-SGTSRGVGF 70 (114)
T ss_dssp CCTTEEEEESCCTTCCHH--------------HHHHTTTTTSCEEEEEE-----------------EECS-SSCEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHH--------------HHHHHHHhcCCEEEEEE-----------------EECC-CCCcceEEE
Confidence 356788988776554443 99999999999999984 3444 677889999
Q ss_pred EEeCCHHHHHHHHH-hCCCcc--------CCeeEEEeccCCC
Q psy14193 101 VRFKNLESVEKALE-MNGHVI--------DEHTIRVDKALTT 133 (239)
Q Consensus 101 V~f~~~e~a~~Ai~-~~~~~l--------~g~~i~v~~~~~~ 133 (239)
|+|.+.++|++|++ +|+..+ .+++|.|.++.++
T Consensus 71 V~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~~~l~v~~a~p~ 112 (114)
T 1x5o_A 71 ARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFSGPS 112 (114)
T ss_dssp EEESCHHHHHHHHHHHBTCCCCCCTTSCCCSSCBEEEECCCS
T ss_pred EEECCHHHHHHHHHHhCCCEEcCCccccCCCCceeEEccCCC
Confidence 99999999999999 999999 5788999888765
No 295
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.44 E-value=1.6e-13 Score=96.18 Aligned_cols=76 Identities=13% Similarity=0.154 Sum_probs=63.4
Q ss_pred cceeEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEE
Q psy14193 22 SKLKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYV 101 (239)
Q Consensus 22 ~~~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV 101 (239)
-.+.|||+++......+ +|+++|++||+|.+|++. +++|||||
T Consensus 20 ps~~l~V~NLp~~~te~--------------~L~~lF~~fG~V~~v~i~-----------------------~~kg~AFV 62 (100)
T 3r27_A 20 ASPVVHIRGLIDGVVEA--------------DLVEALQEFGPISYVVVM-----------------------PKKRQALV 62 (100)
T ss_dssp CCSEEEEESCCTTCCHH--------------HHHHHHGGGSCEEEEEEE-----------------------TTTTEEEE
T ss_pred CCcEEEEeCCCCCCCHH--------------HHHHHHhccCCEEEEEEE-----------------------cCCCEEEE
Confidence 35678888876654444 999999999999999851 23689999
Q ss_pred EeCCHHHHHHHHH-hCCCc--cCCeeEEEeccCCCC
Q psy14193 102 RFKNLESVEKALE-MNGHV--IDEHTIRVDKALTTT 134 (239)
Q Consensus 102 ~f~~~e~a~~Ai~-~~~~~--l~g~~i~v~~~~~~~ 134 (239)
+|.+.++|.+|++ +++.. +.|++|.|.++..+.
T Consensus 63 ef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S~~k~ 98 (100)
T 3r27_A 63 EFEDVLGACNAVNYAADNQIYIAGHPAFVNYSTSQK 98 (100)
T ss_dssp EESSHHHHHHHHHHHHHSCEEETTEEEEEEECSCSC
T ss_pred EECCHHHHHHHHHHhcCCCceeCCcEEEEEeccccc
Confidence 9999999999999 98876 789999999998764
No 296
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.44 E-value=4.2e-14 Score=100.34 Aligned_cols=72 Identities=17% Similarity=0.277 Sum_probs=62.6
Q ss_pred EcCCCCCCcHHHHHHHh------------hcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEE
Q psy14193 143 IGNIPFEAEEEELRKAF------------ESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLI 210 (239)
Q Consensus 143 V~nLp~~~t~~~l~~~F------------~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l 210 (239)
+.+||..+++++|++.| ++||+|.++.++++. ++.++|||||+|.+.++|.+|+..+||..++||.|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 56677777777777666 999999999999885 57899999999999999999999999999999999
Q ss_pred eeCCC
Q psy14193 211 RDQHT 215 (239)
Q Consensus 211 ~~~~~ 215 (239)
++..+
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 98643
No 297
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.44 E-value=2.6e-13 Score=96.39 Aligned_cols=78 Identities=17% Similarity=0.187 Sum_probs=67.4
Q ss_pred CCcEEEEcCC--CCCCc--------HHHHHHHhhcCCCeeEEEEeecCCC--CCCceEEEEEecChHHHHHHHHHhCCcE
Q psy14193 137 NSHSIFIGNI--PFEAE--------EEELRKAFESCGEIDNVRLIRDQHT--NIGKGFGYVNFKAEEEELRKAFESCGEI 204 (239)
Q Consensus 137 ~~~~l~V~nL--p~~~t--------~~~l~~~F~~~G~i~~v~i~~~~~t--g~~kg~~fV~F~~~e~a~~a~~~~~g~~ 204 (239)
+++.|.+.|+ |.++. +++|++.|++||+|.++.+++++.+ +.++|++||+|.+.++|.+|+..|||..
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 4578999998 43443 3799999999999999999988654 3689999999999999999999999999
Q ss_pred eeEEEEeeCC
Q psy14193 205 DNVRLIRDQH 214 (239)
Q Consensus 205 ~~~r~l~~~~ 214 (239)
++||.|++..
T Consensus 84 f~GR~i~v~~ 93 (105)
T 3v4m_A 84 FANRVVVTKY 93 (105)
T ss_dssp ETTEECEEEE
T ss_pred eCCCEEEEEE
Confidence 9999999853
No 298
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.43 E-value=2.8e-14 Score=100.55 Aligned_cols=83 Identities=17% Similarity=0.242 Sum_probs=70.9
Q ss_pred cceeEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEE
Q psy14193 22 SKLKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYV 101 (239)
Q Consensus 22 ~~~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV 101 (239)
....|||+++......+ +|+++|++||.|.+ . ++.+..+++++|||||
T Consensus 16 ~~~~l~V~nLp~~~t~~--------------~l~~~F~~~G~v~~-~-----------------~~~~~~~g~~~g~afV 63 (101)
T 1fj7_A 16 TPFNLFIGNLNPNKSVA--------------ELKVAISELFAKND-L-----------------AVVDVRTGTNRKFGYV 63 (101)
T ss_dssp CSEEEEEECCCTTSCHH--------------HHHHHHHHHHHHHT-C-----------------CCCEEEEETTTTEEEE
T ss_pred CCCEEEEeCCCCCCCHH--------------HHHHHHHHhCCcce-E-----------------EEecCCCCCcCcEEEE
Confidence 56789999876664444 99999999999876 3 3556677889999999
Q ss_pred EeCCHHHHHHHHHhCCCccCCeeEEEeccCCCCCC
Q psy14193 102 RFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKS 136 (239)
Q Consensus 102 ~f~~~e~a~~Ai~~~~~~l~g~~i~v~~~~~~~~~ 136 (239)
+|.+.++|++|+++|+..+.|+.|.|.++.++...
T Consensus 64 ~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~~~~~ 98 (101)
T 1fj7_A 64 DFESAEDLEKALELTGLKVFGNEIKLEKPKGRDGT 98 (101)
T ss_dssp EESSHHHHHHHHHGGGCCBTTBCCEEECCSCCCCS
T ss_pred EECCHHHHHHHHhcCCcEECCcEEEEEEcCCCCCC
Confidence 99999999999999999999999999999877654
No 299
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.43 E-value=2.2e-13 Score=94.02 Aligned_cols=82 Identities=20% Similarity=0.220 Sum_probs=68.8
Q ss_pred ccceeEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEE
Q psy14193 21 MSKLKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAY 100 (239)
Q Consensus 21 ~~~~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~af 100 (239)
.....|||+.+......+ +|+++|++| .|.+|++ +++ .+++++||||
T Consensus 8 ~~~~~l~v~nLp~~~t~~--------------~l~~~F~~~-~i~~v~i-----------------~~~-~~g~~~g~af 54 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEK--------------NVMEFLAPL-KPVAIRI-----------------VRN-AHGNKTGYIF 54 (91)
T ss_dssp CCCCEEEEECCCSSCCHH--------------HHHHHHTTS-CCSEEEE-----------------EEC-TTSCEEEEEE
T ss_pred CCccEEEEECCCCCCCHH--------------HHHHHHhhC-CceEEEE-----------------EEC-CCCCCceEEE
Confidence 356788998776554444 999999999 8999884 334 5677889999
Q ss_pred EEeCCHHHHHHHHHhCCCccCCeeEEEeccCCCCC
Q psy14193 101 VRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTK 135 (239)
Q Consensus 101 V~f~~~e~a~~Ai~~~~~~l~g~~i~v~~~~~~~~ 135 (239)
|+|.+.++|++|+++|+..+.|+.|.|.++.+++.
T Consensus 55 V~f~~~~~a~~A~~~~g~~~~gr~i~v~~a~~~~~ 89 (91)
T 2dgw_A 55 VDFSNEEEVKQALKCNREYMGGRYIEVFREKSGPS 89 (91)
T ss_dssp EECSSHHHHHHHHHSCSEEETTEEEEEEEESSCCC
T ss_pred EEECCHHHHHHHHHhCCceeCCcEEEEEECCcCCC
Confidence 99999999999999999999999999999987653
No 300
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=4.9e-13 Score=93.45 Aligned_cols=76 Identities=16% Similarity=0.349 Sum_probs=64.0
Q ss_pred cceeEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEE
Q psy14193 22 SKLKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYV 101 (239)
Q Consensus 22 ~~~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV 101 (239)
..+.|||+.+ .. ..++|+++|++||+|.+|.+ ++++|||||
T Consensus 14 ~~~~l~V~n~--~~--------------t~~~l~~~F~~~G~i~~v~i-----------------------~~~~g~afV 54 (97)
T 1x5p_A 14 KGNTLYVYGE--DM--------------TPTLLRGAFSPFGNIIDLSM-----------------------DPPRNCAFV 54 (97)
T ss_dssp CCSEEEEECS--SC--------------CHHHHHHHHTTTSCEEEEEE-----------------------ETTTTEEEE
T ss_pred CCCEEEEcCC--CC--------------CHHHHHHHHhhCCCEEEEEe-----------------------cCCCCEEEE
Confidence 4678999873 21 22499999999999999984 245799999
Q ss_pred EeCCHHHHHHHHH-hCCCccCCeeEEEeccCCCCCC
Q psy14193 102 RFKNLESVEKALE-MNGHVIDEHTIRVDKALTTTKS 136 (239)
Q Consensus 102 ~f~~~e~a~~Ai~-~~~~~l~g~~i~v~~~~~~~~~ 136 (239)
+|.+.++|++|++ +|+..+.|++|.|.++.++...
T Consensus 55 ~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~~~~ 90 (97)
T 1x5p_A 55 TYEKMESADQAVAELNGTQVESVQLKVNIARKQPML 90 (97)
T ss_dssp EESSHHHHHHHHHHTTTEEETTEEEEEECCSSCCCC
T ss_pred EECCHHHHHHHHHHhCCCeECCeEEEEEECCCCCCC
Confidence 9999999999998 9999999999999999877543
No 301
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.42 E-value=7.9e-14 Score=103.61 Aligned_cols=80 Identities=19% Similarity=0.201 Sum_probs=67.1
Q ss_pred cceeEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccCCc---eeEEEEeecccccCCCccceeeecccccCCCCcce
Q psy14193 22 SKLKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGE---VETVRFRSVPVADITLPRKACIKMNKVHEKRTNMN 98 (239)
Q Consensus 22 ~~~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~---I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~ 98 (239)
.+..|||+.+......+ +|+++|++||. |.+|++ ++|.. ++++||
T Consensus 43 ~~~~lfVgnLp~~~te~--------------dL~~~F~~~G~v~~v~~v~i-----------------~~d~~-g~srG~ 90 (136)
T 2hgl_A 43 EGFVVKLRGLPWSCSVE--------------DVQNFLSDCTIHDGAAGVHF-----------------IYTRE-GRQSGE 90 (136)
T ss_dssp TTCEEEEESCCTTCCHH--------------HHHHHTTTCCCSSSSTTEEE-----------------EECSS-SCEEEE
T ss_pred CCCEEEEeCCCCCCCHH--------------HHHHHHHHhCCcCceeEEEE-----------------EECCC-CCCCeE
Confidence 35678888876665554 99999999999 788873 44555 778899
Q ss_pred EEEEeCCHHHHHHHHHhCCCccCCeeEEEeccCCC
Q psy14193 99 AYVRFKNLESVEKALEMNGHVIDEHTIRVDKALTT 133 (239)
Q Consensus 99 afV~f~~~e~a~~Ai~~~~~~l~g~~i~v~~~~~~ 133 (239)
|||+|.+.++|++|+++|+..+.|+.|.|.++.+.
T Consensus 91 aFV~F~~~e~a~~Al~~~g~~l~gr~i~V~~a~~~ 125 (136)
T 2hgl_A 91 AFVELGSEDDVKMALKKDRESMGHRYIEVFKSHRT 125 (136)
T ss_dssp EEEECSSHHHHHHHHTTTEEESSSSEEEEEECCHH
T ss_pred EEEEECCHHHHHHHHhcCCCEECCEEEEEEECChH
Confidence 99999999999999999999999999999987543
No 302
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.42 E-value=1.7e-13 Score=110.92 Aligned_cols=74 Identities=20% Similarity=0.319 Sum_probs=68.8
Q ss_pred CCcEEEEcCCCCCC---------cHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEe--
Q psy14193 137 NSHSIFIGNIPFEA---------EEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEID-- 205 (239)
Q Consensus 137 ~~~~l~V~nLp~~~---------t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~-- 205 (239)
..++|||+|||..+ ++++|+++|++||+|.+|+++. ++|||||+|.+.++|..|+..|+|..+
T Consensus 133 ~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~------~kG~AFV~F~~~~~Ae~A~~am~g~~l~~ 206 (240)
T 3u1l_A 133 KNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE------SKNCGFVKFKYQANAEFAKEAMSNQTLLL 206 (240)
T ss_dssp CCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG------GGTEEEEEESSHHHHHHHHHHHTTCCCCC
T ss_pred CCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC------CCCEEEEEeCCHHHHHHHHHHhCCCEEec
Confidence 47899999999998 7999999999999999999985 489999999999999999999999999
Q ss_pred ----------eEEEEeeCCCC
Q psy14193 206 ----------NVRLIRDQHTN 216 (239)
Q Consensus 206 ----------~~r~l~~~~~~ 216 (239)
.++.|.|.++.
T Consensus 207 ~~~~e~~~~~~gr~L~V~wA~ 227 (240)
T 3u1l_A 207 PSDKEWDDRREGTGLLVKWAN 227 (240)
T ss_dssp TTSTTGGGGGGSCCCEEEECC
T ss_pred cccccccccCCCCEEEEEEcc
Confidence 89999998774
No 303
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.42 E-value=1.5e-13 Score=111.11 Aligned_cols=81 Identities=9% Similarity=0.117 Sum_probs=68.2
Q ss_pred cceeEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccCC--ceeEEEEeecccccCCCccceeeecccccCCCCcceE
Q psy14193 22 SKLKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYG--EVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNA 99 (239)
Q Consensus 22 ~~~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G--~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~a 99 (239)
...+|||+++...... ++|+++|++|| +|.+|+ |++|..+++++|||
T Consensus 67 ~~~~lfVgnL~~~~te--------------~~L~~~F~~~G~~~v~~v~-----------------i~~d~~tg~skGfa 115 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTD--------------EDLTEAVHSLGVNDILEIK-----------------FFENRANGQSKGFA 115 (229)
T ss_dssp --CEEEEESCCTTCCH--------------HHHHHHHHTTTCCCEEEEE-----------------EEECTTTCCEEEEE
T ss_pred CccEEEEeCCCCCCCH--------------HHHHHHHHHHCCcceEEEE-----------------EEecCCCCccceEE
Confidence 3456777776555443 49999999999 999988 46677889999999
Q ss_pred EEEeCCHHHHHHHHH-hCCCccCCeeEEEeccCCC
Q psy14193 100 YVRFKNLESVEKALE-MNGHVIDEHTIRVDKALTT 133 (239)
Q Consensus 100 fV~f~~~e~a~~Ai~-~~~~~l~g~~i~v~~~~~~ 133 (239)
||+|.+.++|++||+ ||+..|.|+.|.|.++.+.
T Consensus 116 FV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~a~~~ 150 (229)
T 3q2s_C 116 LVGVGSEASSKKLMDLLPKRELHGQNPVVTPVNKQ 150 (229)
T ss_dssp EEEESCTTHHHHHHTTSTTSCBTTBCCEEEECCHH
T ss_pred EEEECCHHHHHHHHHHcCCCeECCEEeEEEECCCC
Confidence 999999999999999 9999999999999988654
No 304
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=4.7e-14 Score=103.24 Aligned_cols=81 Identities=19% Similarity=0.205 Sum_probs=67.9
Q ss_pred cceeEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEE
Q psy14193 22 SKLKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYV 101 (239)
Q Consensus 22 ~~~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV 101 (239)
.+..|||+.+......+ +|+++|++||.|.++. ++.+..+++++|||||
T Consensus 24 ~~~~l~V~nLp~~~te~--------------~l~~~F~~~G~v~~~~-----------------~~~~~~~g~~~G~afV 72 (124)
T 1wel_A 24 AGFCVYLKGLPFEAENK--------------HVIDFFKKLDIVEDSI-----------------YIAYGPNGKATGEGFV 72 (124)
T ss_dssp CCCEEEEECCCTTCCHH--------------HHHHHSCSSCBCTTTC-----------------EEEECTTSSEEEEEEE
T ss_pred CCcEEEEeCCCCCCCHH--------------HHHHHHHhcCCccceE-----------------EEEECCCCCCCeEEEE
Confidence 45789998876664444 9999999999998743 3445567888999999
Q ss_pred EeCCHHHHHHHHHhCCCccCCeeEEEeccCCC
Q psy14193 102 RFKNLESVEKALEMNGHVIDEHTIRVDKALTT 133 (239)
Q Consensus 102 ~f~~~e~a~~Ai~~~~~~l~g~~i~v~~~~~~ 133 (239)
+|.+.++|++|+++|+..+.|+.|.|.++.++
T Consensus 73 ~F~~~~~a~~Al~~~g~~~~gr~i~V~~a~~~ 104 (124)
T 1wel_A 73 EFRNEADYKAALCRHKQYMGNRFIQVHPITKK 104 (124)
T ss_dssp EBSSSHHHHHHHTSCSBCSTTSCBEEEEECHH
T ss_pred EECCHHHHHHHHHhCCCeECCcEEEEEECCHH
Confidence 99999999999999999999999999988654
No 305
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.41 E-value=1.7e-13 Score=99.48 Aligned_cols=80 Identities=20% Similarity=0.218 Sum_probs=67.3
Q ss_pred cceeEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccCCc---eeEEEEeecccccCCCccceeeecccccCCCCcce
Q psy14193 22 SKLKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGE---VETVRFRSVPVADITLPRKACIKMNKVHEKRTNMN 98 (239)
Q Consensus 22 ~~~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~---I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~ 98 (239)
.+..|||+.+......+ +|+++|++||. |.+|++ +.+.. ++++||
T Consensus 16 ~~~~l~V~nLp~~~te~--------------~l~~~F~~~G~~~~v~~v~i-----------------~~~~~-g~~~G~ 63 (118)
T 2db1_A 16 EGYVVKLRGLPWSCSIE--------------DVQNFLSDCTIHDGVAGVHF-----------------IYTRE-GRQSGE 63 (118)
T ss_dssp CCCEEEEESCCTTCCHH--------------HHHHHTTTSCBTTGGGGEEE-----------------EECSS-SCEEEE
T ss_pred CCcEEEEeCCCCCCCHH--------------HHHHHHHHcCCccCceeEEE-----------------EECCC-CCCCeE
Confidence 56789999877765554 99999999999 888884 33444 677899
Q ss_pred EEEEeCCHHHHHHHHHhCCCccCCeeEEEeccCCC
Q psy14193 99 AYVRFKNLESVEKALEMNGHVIDEHTIRVDKALTT 133 (239)
Q Consensus 99 afV~f~~~e~a~~Ai~~~~~~l~g~~i~v~~~~~~ 133 (239)
|||+|.+.++|++|+++|+..+.|+.|.|.++.+.
T Consensus 64 afV~F~~~~~a~~Al~~~g~~~~gr~i~V~~a~~~ 98 (118)
T 2db1_A 64 AFVELESEDDVKLALKKDRESMGHRYIEVFKSHRT 98 (118)
T ss_dssp EEEEBSSHHHHHHHGGGTTEEETTEEEEEEEECHH
T ss_pred EEEEECCHHHHHHHHhcCCCeECCeEEEEEECCHH
Confidence 99999999999999999999999999999887543
No 306
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.41 E-value=3.4e-13 Score=94.55 Aligned_cols=78 Identities=14% Similarity=0.264 Sum_probs=66.0
Q ss_pred ccceeEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEE
Q psy14193 21 MSKLKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAY 100 (239)
Q Consensus 21 ~~~~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~af 100 (239)
-..+.|||+.+......+ +|+++|++||+|.+|++. +++||||
T Consensus 13 ~~~~~l~V~nlp~~~t~~--------------~l~~~F~~~G~i~~v~~~-----------------------~~kg~af 55 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEE--------------EMRKLFEKYGKAGEVFIH-----------------------KDKGFGF 55 (99)
T ss_dssp CCTTEEEEESCCTTCCHH--------------HHHHHTSTTCCCSEEEEE-----------------------TTTTEEE
T ss_pred CCCCEEEEeCCCCCCCHH--------------HHHHHHhhcCCeEEEEEe-----------------------cCCCEEE
Confidence 356789998776554443 999999999999999851 2368999
Q ss_pred EEeCCHHHHHHHHH-hCCCccCCeeEEEeccCCCCC
Q psy14193 101 VRFKNLESVEKALE-MNGHVIDEHTIRVDKALTTTK 135 (239)
Q Consensus 101 V~f~~~e~a~~Ai~-~~~~~l~g~~i~v~~~~~~~~ 135 (239)
|+|.+.++|++|++ +++..+.|++|.|.++.++..
T Consensus 56 V~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~~ 91 (99)
T 2cpj_A 56 IRLETRTLAEIAKVELDNMPLRGKQLRVRFACHSAS 91 (99)
T ss_dssp EECSSSHHHHHHHHHHTTCCBTTBCCEEEESSCCSC
T ss_pred EEECCHHHHHHHHHHhCCCEeCCceEEEEEcCCCCC
Confidence 99999999999998 999999999999999987753
No 307
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.41 E-value=2.8e-13 Score=96.85 Aligned_cols=77 Identities=21% Similarity=0.248 Sum_probs=64.4
Q ss_pred ceeEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEEE
Q psy14193 23 KLKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVR 102 (239)
Q Consensus 23 ~~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV~ 102 (239)
+..|||+.+......+ +|+++|++| .|.+|+| +.|.. ++++|||||+
T Consensus 16 ~~~v~V~nLp~~~te~--------------dl~~~F~~~-~v~~v~i-----------------~~d~~-g~~~G~afV~ 62 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMEN--------------DVRDFFHGL-RVDAVHL-----------------LKDHV-GRNNGNGLVK 62 (109)
T ss_dssp HHEEEEECCCSSCCHH--------------HHHHHTTTS-CCCEEEE-----------------CCCTT-CCCCSEEEEE
T ss_pred CCEEEEeCCCCCCCHH--------------HHHHHhccC-CeeEEEE-----------------EECCC-CCCCeEEEEE
Confidence 4678888776665544 999999999 8999883 33443 7788999999
Q ss_pred eCCHHHHHHHHHhCCCccCCeeEEEeccCC
Q psy14193 103 FKNLESVEKALEMNGHVIDEHTIRVDKALT 132 (239)
Q Consensus 103 f~~~e~a~~Ai~~~~~~l~g~~i~v~~~~~ 132 (239)
|.++++|++|+++|+..++|+.|.|..+.+
T Consensus 63 F~~~~~a~~Al~~~~~~~~gr~i~V~~a~~ 92 (109)
T 2dnn_A 63 FLSPQDTFEALKRNRMLMIQRYVEVSPATE 92 (109)
T ss_dssp CSSHHHHHHHHHTTTEEETTEEEEEEECCH
T ss_pred ECCHHHHHHHHhcCCCeECCeEEEEEECCc
Confidence 999999999999999999999999987754
No 308
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=7e-13 Score=93.43 Aligned_cols=78 Identities=9% Similarity=0.122 Sum_probs=64.1
Q ss_pred cceeEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEE
Q psy14193 22 SKLKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYV 101 (239)
Q Consensus 22 ~~~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV 101 (239)
..+.|||+++......+ +|+++|++||.|.+|.+ + + .+|||||
T Consensus 14 p~~~l~V~nLp~~~te~--------------~L~~~F~~fG~v~~v~i---~--------------~------~kg~aFV 56 (101)
T 2cq1_A 14 PSRVLHIRKLPGEVTET--------------EVIALGLPFGKVTNILM---L--------------K------GKNQAFL 56 (101)
T ss_dssp CCSEEEEESCCTTCCHH--------------HHHHTTTTTSCEEEEEE---E--------------T------TTTEEEE
T ss_pred CCCEEEEeCCCCCCCHH--------------HHHHHHHhcCCEEEEEE---E--------------C------CCCEEEE
Confidence 35789998876654444 99999999999999984 1 1 1699999
Q ss_pred EeCCHHHHHHHHH-h--CCCccCCeeEEEeccCCCCCC
Q psy14193 102 RFKNLESVEKALE-M--NGHVIDEHTIRVDKALTTTKS 136 (239)
Q Consensus 102 ~f~~~e~a~~Ai~-~--~~~~l~g~~i~v~~~~~~~~~ 136 (239)
+|.+.++|++|++ + ++..+.|++|.|.++.++...
T Consensus 57 ef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~~~~ 94 (101)
T 2cq1_A 57 ELATEEAAITMVNYYSAVTPHLRNQPIYIQYSNHKELK 94 (101)
T ss_dssp EESSHHHHHHHHHHHHHSCCEETTEECEEEECSCSSCC
T ss_pred EECCHHHHHHHHHHhccCCceECCcEEEEEEcCcccCc
Confidence 9999999999999 6 467899999999999876543
No 309
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.41 E-value=2.3e-13 Score=95.74 Aligned_cols=76 Identities=5% Similarity=0.142 Sum_probs=64.7
Q ss_pred ccceeEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEE
Q psy14193 21 MSKLKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAY 100 (239)
Q Consensus 21 ~~~~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~af 100 (239)
-..+.|||+++...... ++|+++|++||.|.+|++. +++||||
T Consensus 25 ~~~~~l~V~nlp~~~~~--------------~~l~~~f~~~G~i~~~~~~-----------------------~~~g~af 67 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATE--------------ADLIPLFQNFGFILDFKHY-----------------------PEKGCCF 67 (101)
T ss_dssp SSCCEEEEESCCTTCCH--------------HHHHHHHHTTSCCSEEEEE-----------------------TTTTEEE
T ss_pred CCCCEEEEcCCCcccCH--------------HHHHHHHHhCCCEEEEEEe-----------------------cCCCEEE
Confidence 34678999887655444 4999999999999999851 3579999
Q ss_pred EEeCCHHHHHHHHH-hCCCccCCeeEEEeccCCC
Q psy14193 101 VRFKNLESVEKALE-MNGHVIDEHTIRVDKALTT 133 (239)
Q Consensus 101 V~f~~~e~a~~Ai~-~~~~~l~g~~i~v~~~~~~ 133 (239)
|+|.+.++|++|+. +|+..+.|+.|.|.++.++
T Consensus 68 V~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 101 (101)
T 2la4_A 68 IKYDTHEQAAVCIVALANFPFQGRNLRTGWGKER 101 (101)
T ss_dssp EECSSHHHHHHHHHHHTTCEETTEECCCCBCCCC
T ss_pred EEECCHHHHHHHHHHhCCCeECCeEEEEEeccCC
Confidence 99999999999999 9999999999999998753
No 310
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.40 E-value=7.4e-13 Score=93.12 Aligned_cols=79 Identities=15% Similarity=0.264 Sum_probs=65.6
Q ss_pred cceeEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEE
Q psy14193 22 SKLKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYV 101 (239)
Q Consensus 22 ~~~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV 101 (239)
..+.|||+++......+ +|+++|++||+| + + +.+ .+++++|||||
T Consensus 14 ~~~~l~V~nLp~~~t~~--------------~l~~~F~~~g~v---~---~--------------~~~-~~g~~~g~afV 58 (101)
T 2fc9_A 14 ESKTLVLSNLSYSATEE--------------TLQEVFEKATFI---K---V--------------PQN-QNGKSKGYAFI 58 (101)
T ss_dssp CCSEEEEESCCTTCCHH--------------HHHHHCSSCSEE---E---C--------------CBC-SSSCBCSEEEE
T ss_pred CCCEEEEeCCCCCCCHH--------------HHHHHHHhCCEE---E---E--------------EEC-CCCCEeeEEEE
Confidence 56889998876654444 999999999987 3 2 222 45677899999
Q ss_pred EeCCHHHHHHHHH-hCCCccCCeeEEEeccCCCCC
Q psy14193 102 RFKNLESVEKALE-MNGHVIDEHTIRVDKALTTTK 135 (239)
Q Consensus 102 ~f~~~e~a~~Ai~-~~~~~l~g~~i~v~~~~~~~~ 135 (239)
+|.+.++|++|++ +|+..+.|+.|.|.++.++..
T Consensus 59 ~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 93 (101)
T 2fc9_A 59 EFASFEDAKEALNSCNKREIEGRAIRLELQGPRGS 93 (101)
T ss_dssp ECSSHHHHHHHHHHTSSEEETTEEEEEEECSSCCC
T ss_pred EECCHHHHHHHHHHhCCCEeCCeEEEEEEcCCCCC
Confidence 9999999999999 999999999999999987754
No 311
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.40 E-value=4.9e-13 Score=96.81 Aligned_cols=78 Identities=12% Similarity=0.192 Sum_probs=64.5
Q ss_pred cceeEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEE
Q psy14193 22 SKLKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYV 101 (239)
Q Consensus 22 ~~~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV 101 (239)
..+.|||+++......+ +|+++|++||.|.+|++. + .+|||||
T Consensus 30 ps~~LfVgNLp~~vte~--------------dL~~lF~~fG~V~~v~i~-----------------~------~kG~AFV 72 (119)
T 2ad9_A 30 PSRVIHIRKLPIDVTEG--------------EVISLGLPFGKVTNLLML-----------------K------GKNQAFI 72 (119)
T ss_dssp CCSEEEEESCCTTCCHH--------------HHHHHHTTTSCCCEEEEE-----------------G------GGTEEEE
T ss_pred CCCEEEEeCCCCCCCHH--------------HHHHHHHhcCCEEEEEEe-----------------C------CCCEEEE
Confidence 35789998876664444 999999999999999851 1 1699999
Q ss_pred EeCCHHHHHHHHH-hC--CCccCCeeEEEeccCCCCCC
Q psy14193 102 RFKNLESVEKALE-MN--GHVIDEHTIRVDKALTTTKS 136 (239)
Q Consensus 102 ~f~~~e~a~~Ai~-~~--~~~l~g~~i~v~~~~~~~~~ 136 (239)
+|.+.++|++|++ ++ +..+.|++|.|.++.++...
T Consensus 73 eF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~k~~~ 110 (119)
T 2ad9_A 73 EMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKELK 110 (119)
T ss_dssp ECSCHHHHHHHHHHHHHHCCCBTTBCCEEEECSSSSCC
T ss_pred EECCHHHHHHHHHHhccCCceECCeEEEEEEccCCCCC
Confidence 9999999999999 77 46899999999999877643
No 312
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.40 E-value=1.8e-13 Score=98.10 Aligned_cols=77 Identities=16% Similarity=0.224 Sum_probs=63.3
Q ss_pred cceeEEeehhhHh-hhhhcCCCcchhhchhHHHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEE
Q psy14193 22 SKLKVFLNIWKMA-LKLKMNPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAY 100 (239)
Q Consensus 22 ~~~~v~v~~~~~~-~~~~~~~~~~~~k~~r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~af 100 (239)
..+.|||+++... ... ++|+++|++||+|.+|++. +++||||
T Consensus 24 p~~~l~V~NLp~~~~te--------------~~L~~lF~~fG~V~~v~i~-----------------------~~kg~aF 66 (112)
T 1x4f_A 24 LGRVIHLSNLPHSGYSD--------------SAVLKLAEPYGKIKNYILM-----------------------RMKSQAF 66 (112)
T ss_dssp CCCEEEEESCCCSSCCS--------------HHHHTTTTTTSCCSEEEEE-----------------------TTTTEEE
T ss_pred CCCEEEEeCCCCccCCH--------------HHHHHHHHhcCCEEEEEEe-----------------------cCCCEEE
Confidence 4678999887654 333 3999999999999999851 2469999
Q ss_pred EEeCCHHHHHHHHH-hC--CCccCCeeEEEeccCCCCC
Q psy14193 101 VRFKNLESVEKALE-MN--GHVIDEHTIRVDKALTTTK 135 (239)
Q Consensus 101 V~f~~~e~a~~Ai~-~~--~~~l~g~~i~v~~~~~~~~ 135 (239)
|+|.+.++|++|++ ++ +..+.|++|.|.++.....
T Consensus 67 Vef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~~~~ 104 (112)
T 1x4f_A 67 IEMETREDAMAMVDHCLKKALWFQGRCVKVDLSEKYKK 104 (112)
T ss_dssp EECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEECSCSS
T ss_pred EEECCHHHHHHHHHHhccCCceECCEEEEEEECccccc
Confidence 99999999999999 75 4569999999999976643
No 313
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.40 E-value=4.2e-13 Score=96.28 Aligned_cols=75 Identities=16% Similarity=0.201 Sum_probs=64.0
Q ss_pred cceeEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEE
Q psy14193 22 SKLKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYV 101 (239)
Q Consensus 22 ~~~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV 101 (239)
.+..|||+++......+ +|+++|++||+|.+|.+ + .++|||||
T Consensus 9 ~~~~l~V~nLp~~~te~--------------~L~~~F~~~G~i~~v~i---~--------------------~~~g~afV 51 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAA--------------EIQETFSRFGSLGRVLL---P--------------------EGGITAIV 51 (111)
T ss_dssp EEEEEEEESCCTTCCHH--------------HHHHHHHTTSCEEEEEC---C--------------------SSSSCEEE
T ss_pred CCCEEEEeCCCCCCCHH--------------HHHHHHHhcCCEEEEEE---e--------------------CCCCEEEE
Confidence 46789998876554443 99999999999999984 1 24689999
Q ss_pred EeCCHHHHHHHHH-hCCCccCCeeEEEeccCCC
Q psy14193 102 RFKNLESVEKALE-MNGHVIDEHTIRVDKALTT 133 (239)
Q Consensus 102 ~f~~~e~a~~Ai~-~~~~~l~g~~i~v~~~~~~ 133 (239)
+|.+.++|++|++ +|+..+.|+.|.|.++...
T Consensus 52 ~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 84 (111)
T 1whx_A 52 EFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIG 84 (111)
T ss_dssp EESCHHHHHHHHHHHTTCBSSSSBCEEEEEETT
T ss_pred EeCCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 9999999999999 9999999999999998754
No 314
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.40 E-value=8.7e-13 Score=95.53 Aligned_cols=78 Identities=14% Similarity=0.115 Sum_probs=67.6
Q ss_pred CCcEEEEcCCCC--CC---cHHHHHHHhhcCCCeeEEEEeecCC----CCCCceEEEEEecChHHHHHHHHHhCCcEeeE
Q psy14193 137 NSHSIFIGNIPF--EA---EEEELRKAFESCGEIDNVRLIRDQH----TNIGKGFGYVNFKAEEEELRKAFESCGEIDNV 207 (239)
Q Consensus 137 ~~~~l~V~nLp~--~~---t~~~l~~~F~~~G~i~~v~i~~~~~----tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~ 207 (239)
++++|++.|+-. ++ .+++|++.|++||+|.++.|++++. ++.++|++||+|.+.++|.+|+..|||..++|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 357999999842 22 3699999999999999999998854 45678999999999999999999999999999
Q ss_pred EEEeeCC
Q psy14193 208 RLIRDQH 214 (239)
Q Consensus 208 r~l~~~~ 214 (239)
|.|++..
T Consensus 99 R~i~v~~ 105 (118)
T 3ue2_A 99 RKVVAEV 105 (118)
T ss_dssp EECEEEE
T ss_pred cEEEEEE
Confidence 9999853
No 315
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.40 E-value=1.5e-12 Score=93.44 Aligned_cols=75 Identities=24% Similarity=0.231 Sum_probs=65.3
Q ss_pred CCcEEEEcCCCCCCc-----------HHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEe
Q psy14193 137 NSHSIFIGNIPFEAE-----------EEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEID 205 (239)
Q Consensus 137 ~~~~l~V~nLp~~~t-----------~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~ 205 (239)
+.++|+|.||....+ +++|+++|++||+|..+.+ .+. .++|||||+|.+.++|.+|+..+||..+
T Consensus 14 ~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng~~~ 89 (112)
T 2dit_A 14 HERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDGRWF 89 (112)
T ss_dssp SCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTTCEE
T ss_pred CceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCCCEE
Confidence 478999999954432 6899999999999999966 443 3799999999999999999999999999
Q ss_pred eEEEEeeCCC
Q psy14193 206 NVRLIRDQHT 215 (239)
Q Consensus 206 ~~r~l~~~~~ 215 (239)
.++.|++..+
T Consensus 90 ~gr~l~v~~a 99 (112)
T 2dit_A 90 GGRQITAQAW 99 (112)
T ss_dssp TTEECEEEEC
T ss_pred CCcEEEEEEe
Confidence 9999999865
No 316
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.39 E-value=1.7e-13 Score=97.59 Aligned_cols=81 Identities=12% Similarity=0.150 Sum_probs=67.3
Q ss_pred ccceeEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccCCc---eeEEEEeecccccCCCccceeeecccccCCCCcc
Q psy14193 21 MSKLKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGE---VETVRFRSVPVADITLPRKACIKMNKVHEKRTNM 97 (239)
Q Consensus 21 ~~~~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~---I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G 97 (239)
-.+..|||+.+......+ +|+++|++||. |.+|++ +.+.. ++++|
T Consensus 9 ~~~~~l~V~nLp~~~te~--------------~l~~~F~~~g~~~~v~~v~i-----------------~~~~~-g~~~G 56 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTME--------------DVLNFFSDCRIRNGENGIHF-----------------LLNRD-GKRRG 56 (107)
T ss_dssp SSCCEEEEECCCSSCCSH--------------HHHHHTTTSCBTTTTTTEEC-----------------CCCTT-STTCS
T ss_pred CCccEEEEeCCCCCCCHH--------------HHHHHHHhcCCcCCcceEEE-----------------EECCC-CCEee
Confidence 356789998876665444 99999999998 888883 34444 77889
Q ss_pred eEEEEeCCHHHHHHHHHhCCCccCCeeEEEeccCCC
Q psy14193 98 NAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALTT 133 (239)
Q Consensus 98 ~afV~f~~~e~a~~Ai~~~~~~l~g~~i~v~~~~~~ 133 (239)
||||+|.+.++|++|+++++..++|+.|.|.++.+.
T Consensus 57 ~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~a~~~ 92 (107)
T 2lmi_A 57 DALIEMESEQDVQKALEKHRMYMGQRYVEVYEINNE 92 (107)
T ss_dssp EEEEEBSSHHHHHHHHTTTTCCSSSSCCCCEECCHH
T ss_pred EEEEEECCHHHHHHHHHhCcceeCCeEEEEEECCHH
Confidence 999999999999999999999999999999887643
No 317
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.39 E-value=7.1e-13 Score=92.55 Aligned_cols=77 Identities=18% Similarity=0.376 Sum_probs=64.5
Q ss_pred cceeEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEE
Q psy14193 22 SKLKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYV 101 (239)
Q Consensus 22 ~~~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV 101 (239)
..+.|||+.+...... ++|+++|++||+|.+|++ .. .+|||||
T Consensus 16 ~~~~l~V~nlp~~~t~--------------~~l~~~F~~~G~v~~v~~---~~--------------------~~g~afV 58 (97)
T 1why_A 16 PTTRLWVGGLGPNTSL--------------AALAREFDRFGSIRTIDH---VK--------------------GDSFAYI 58 (97)
T ss_dssp CCSCEEEECCCSSCCH--------------HHHHHHHHTTSCEEEEEE---CS--------------------SSCCEEE
T ss_pred CCCEEEEeCCCCCCCH--------------HHHHHHHHhcCCeeEEEE---eC--------------------CCCEEEE
Confidence 4578888876555433 499999999999999985 11 1689999
Q ss_pred EeCCHHHHHHHHH-hCCCccC--CeeEEEeccCCCCC
Q psy14193 102 RFKNLESVEKALE-MNGHVID--EHTIRVDKALTTTK 135 (239)
Q Consensus 102 ~f~~~e~a~~Ai~-~~~~~l~--g~~i~v~~~~~~~~ 135 (239)
+|.+.++|++|++ +|+..+. |+.|.|.++.++..
T Consensus 59 ~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~~~~~ 95 (97)
T 1why_A 59 QYESLDAAQAACAKMRGFPLGGPDRRLRVDFAKSGPS 95 (97)
T ss_dssp EESSHHHHHHHHHHHTTCBCSSSSCBCEEEECCCCCC
T ss_pred EECCHHHHHHHHHHHCCCEeCCCCcEEEEEECCCCCC
Confidence 9999999999999 9999999 99999999988754
No 318
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.39 E-value=2.1e-13 Score=98.84 Aligned_cols=83 Identities=14% Similarity=0.163 Sum_probs=63.5
Q ss_pred eeEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEEEe
Q psy14193 24 LKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRF 103 (239)
Q Consensus 24 ~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV~f 103 (239)
.+|||+++...+.. ....++|+++|++||+|.+|. ++.|+.|++++|||||+|
T Consensus 3 ~kI~VgnL~~~~~~----------~tte~~Lk~~Fs~fGeV~~~~-----------------li~Dp~Tg~slGfgfVef 55 (136)
T 2j8a_A 3 CEIVVYPAQDSTTT----------NIQDISIKNYFKKYGEISHFE-----------------AFNDPNSALPLHVYLIKY 55 (136)
T ss_dssp CEEEEEESSSSCCC----------CCCHHHHHHHHHTTSCCSEEE-----------------EEECTTTCCEEEEEEEEC
T ss_pred cEEEEeCCCCCCCC----------CCCHHHHHHHHHhcCCeEEEE-----------------EEecCCCCceeeEEEEEE
Confidence 68899988222111 122249999999999999988 577899999999999999
Q ss_pred CC----HHH----HHHHHH---hCCCccCCeeEEEeccCCC
Q psy14193 104 KN----LES----VEKALE---MNGHVIDEHTIRVDKALTT 133 (239)
Q Consensus 104 ~~----~e~----a~~Ai~---~~~~~l~g~~i~v~~~~~~ 133 (239)
.+ +++ |.+|+. +++..++|++|+|......
T Consensus 56 ~d~~g~~d~a~kAA~kAi~~~~lng~~I~Gr~irV~ln~~g 96 (136)
T 2j8a_A 56 ASSDGKINDAAKAAFSAVRKHESSGCFIMGFKFEVILNKHS 96 (136)
T ss_dssp C------CCHHHHHHHHHHHTTTTCEEETTEEEEEEECCTT
T ss_pred CCCCCCcchHHHHHHHHHHHhhhcCCeecCcEEEEEECccc
Confidence 96 333 788876 6999999999999876543
No 319
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.39 E-value=6.4e-13 Score=94.33 Aligned_cols=67 Identities=16% Similarity=0.261 Sum_probs=56.0
Q ss_pred HHHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEEEeCCHHHHHHHHH-hCCCccCCeeEEEec
Q psy14193 51 LSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALE-MNGHVIDEHTIRVDK 129 (239)
Q Consensus 51 ~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV~f~~~e~a~~Ai~-~~~~~l~g~~i~v~~ 129 (239)
.++|++.|++||+|.+|. ++.+..+ .+++++|+|||+|.+.++|.+|++ |||..+.|++|.|.+
T Consensus 29 ~~dl~~~f~k~G~V~~v~---i~~~~~~------------~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~f~GR~i~v~~ 93 (105)
T 3v4m_A 29 VEDVRDECSKYGLVKSIE---IPRPVDG------------VEVPGCGKIFVEFTSVFDCQKAMQGLTGRKFANRVVVTKY 93 (105)
T ss_dssp HHHHHHHHHTTSCEEEEE---CCCCBTT------------BCCTTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred HHHHHHHHHccCCEEEEE---EeccCCC------------CCcCCcEEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEE
Confidence 389999999999999998 3333221 124678999999999999999999 999999999999988
Q ss_pred cCC
Q psy14193 130 ALT 132 (239)
Q Consensus 130 ~~~ 132 (239)
+..
T Consensus 94 ~~~ 96 (105)
T 3v4m_A 94 CDP 96 (105)
T ss_dssp ECH
T ss_pred eCH
Confidence 653
No 320
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.39 E-value=2.7e-13 Score=94.60 Aligned_cols=80 Identities=20% Similarity=0.399 Sum_probs=65.9
Q ss_pred cceeEEeehhhHhhhhhcCCCcchhhchhHHHHH----HhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcc
Q psy14193 22 SKLKVFLNIWKMALKLKMNPSLTKSKNHALSSVT----SMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNM 97 (239)
Q Consensus 22 ~~~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~----~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G 97 (239)
..+.|||+++......+ +|+ ++|++||+|.+|.+ + .++.++|
T Consensus 7 ~~~~l~V~nLp~~~~~~--------------~l~~~l~~~f~~~G~i~~v~i---~-----------------~~~~~~g 52 (97)
T 1nu4_A 7 PNHTIYINNLNEKIKKD--------------ELKKSLHAIFSRFGQILDILV---S-----------------RSLKMRG 52 (97)
T ss_dssp CCSEEEEESCCTTSCHH--------------HHHHHHHHHHGGGSCEEEEEC---C-----------------HHHHHTT
T ss_pred CCCEEEEeCCCCCCCHH--------------HHHHHHHHHHHhCCCEEEEEE---E-----------------cCCCcCc
Confidence 45788888765553333 777 99999999999884 1 1355679
Q ss_pred eEEEEeCCHHHHHHHHH-hCCCccCCeeEEEeccCCCCC
Q psy14193 98 NAYVRFKNLESVEKALE-MNGHVIDEHTIRVDKALTTTK 135 (239)
Q Consensus 98 ~afV~f~~~e~a~~Ai~-~~~~~l~g~~i~v~~~~~~~~ 135 (239)
||||+|.+.++|++|++ +|+..+.|+.|.|.++.+...
T Consensus 53 ~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 91 (97)
T 1nu4_A 53 QAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAKTDSD 91 (97)
T ss_dssp CEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSSCCT
T ss_pred EEEEEeCCHHHHHHHHHHhCCCEECCcEEEEEEccCCCc
Confidence 99999999999999999 999999999999999987653
No 321
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.09 E-value=3e-14 Score=103.00 Aligned_cols=92 Identities=18% Similarity=0.239 Sum_probs=71.1
Q ss_pred cceeEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEE
Q psy14193 22 SKLKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYV 101 (239)
Q Consensus 22 ~~~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV 101 (239)
..+.|||+++......+ +|+++|++||.|.++... +.+. +.++.++.++.++|||||
T Consensus 6 ~~~~l~V~nLp~~~t~~--------------~l~~~F~~~G~i~~~~~~-------~~~~--v~i~~~~~~g~~~g~afV 62 (116)
T 2lcw_A 6 DNNTIFVQGLGENVTIE--------------SVADYFKQIGIIKTNKKT-------GQPM--INLYTDRETGKLKGEATV 62 (116)
Confidence 35678888776554444 999999999999882100 0000 114566778889999999
Q ss_pred EeCCHHHHHHHHH-hCCCccCCeeEEEeccCCCCCC
Q psy14193 102 RFKNLESVEKALE-MNGHVIDEHTIRVDKALTTTKS 136 (239)
Q Consensus 102 ~f~~~e~a~~Ai~-~~~~~l~g~~i~v~~~~~~~~~ 136 (239)
+|.+.++|++|++ +|+..+.|++|.|.++.++...
T Consensus 63 ~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 63 SFDDPPSAKAAIDWFDGKEFSGNPIKVSFATRRADF 98 (116)
Confidence 9999999999999 9999999999999999877654
No 322
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.39 E-value=5.2e-13 Score=94.63 Aligned_cols=76 Identities=12% Similarity=0.131 Sum_probs=62.2
Q ss_pred ceeEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEEE
Q psy14193 23 KLKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVR 102 (239)
Q Consensus 23 ~~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV~ 102 (239)
.+.|||+++...... ++|+++|++||.|.+|.+. +.+|||||+
T Consensus 15 ~~~l~V~nLp~~~te--------------~~L~~~F~~fG~V~~v~i~-----------------------~~kg~aFVe 57 (104)
T 1wex_A 15 SPVVHVRGLCESVVE--------------ADLVEALEKFGTICYVMMM-----------------------PFKRQALVE 57 (104)
T ss_dssp CSEEEEESCCSSCCH--------------HHHHHHHTTTSCEEEEEEE-----------------------TTTTEEEEE
T ss_pred CCEEEEeCCCCCCCH--------------HHHHHHHHhCCCEEEEEEE-----------------------CCCCEEEEE
Confidence 578999876655443 4999999999999998841 126899999
Q ss_pred eCCHHHHHHHHH-hCCC--ccCCeeEEEeccCCCCC
Q psy14193 103 FKNLESVEKALE-MNGH--VIDEHTIRVDKALTTTK 135 (239)
Q Consensus 103 f~~~e~a~~Ai~-~~~~--~l~g~~i~v~~~~~~~~ 135 (239)
|.+.++|++|++ +++. .+.|++|.|.++..+..
T Consensus 58 f~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~~~~~ 93 (104)
T 1wex_A 58 FENIDSAKECVTFAADVPVYIAGQQAFFNYSTSKRI 93 (104)
T ss_dssp ESSHHHHHHHHHHHHHSCCBSSSSBCEEEECSSSSC
T ss_pred ECCHHHHHHHHHHhccCCceECCEEEEEEEccCccc
Confidence 999999999999 8654 58999999999987653
No 323
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.38 E-value=3.3e-13 Score=101.93 Aligned_cols=61 Identities=18% Similarity=0.331 Sum_probs=54.9
Q ss_pred HHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEEEeCCHHHHHHHHH-hCCCccCCeeEEEecc
Q psy14193 52 SSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALE-MNGHVIDEHTIRVDKA 130 (239)
Q Consensus 52 ~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV~f~~~e~a~~Ai~-~~~~~l~g~~i~v~~~ 130 (239)
++|+++|++||+|.+|++ +. + ++|||||+|.+.++|++|++ +|+..+.|++|.|.++
T Consensus 88 ~~l~~~F~~~G~i~~v~i---~~--------------~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 145 (150)
T 2i2y_A 88 TELERAFGYYGPLRSVWV---AR--------------N-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELS 145 (150)
T ss_dssp HHHHHHHHHHSCEEEEEE---CS--------------S-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEEC
T ss_pred HHHHHHHHhhCCEEEEEE---ee--------------C-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEc
Confidence 899999999999999985 21 1 47999999999999999999 9999999999999999
Q ss_pred CCCC
Q psy14193 131 LTTT 134 (239)
Q Consensus 131 ~~~~ 134 (239)
.++.
T Consensus 146 ~~~~ 149 (150)
T 2i2y_A 146 NGEK 149 (150)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8764
No 324
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.38 E-value=5.8e-13 Score=94.39 Aligned_cols=61 Identities=26% Similarity=0.398 Sum_probs=53.1
Q ss_pred HHHHHhc-ccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEEEeCCHHHHHHHHH-hCCCccCCeeEEEec
Q psy14193 52 SSVTSMF-KPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALE-MNGHVIDEHTIRVDK 129 (239)
Q Consensus 52 ~~l~~~F-~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV~f~~~e~a~~Ai~-~~~~~l~g~~i~v~~ 129 (239)
++|++.| ++||+|.+|++ +. +. +++++|||||+|.+.++|++|++ +||..+.|++|.|.+
T Consensus 41 edl~~~f~~~~G~V~~v~i---~~--------------~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~v~~ 102 (104)
T 1jmt_A 41 EEVFTEMEEKYGEVEEMNV---CD--------------NL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAEL 102 (104)
T ss_dssp HHHHHHHHHHTCCEEEEEE---CC--------------SS-SSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECCEEE
T ss_pred HHHHHHhhccCCceEEEEE---Ee--------------CC-CCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEEEEE
Confidence 7888999 99999999984 22 22 25678999999999999999999 999999999999987
Q ss_pred c
Q psy14193 130 A 130 (239)
Q Consensus 130 ~ 130 (239)
+
T Consensus 103 s 103 (104)
T 1jmt_A 103 S 103 (104)
T ss_dssp C
T ss_pred c
Confidence 5
No 325
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.38 E-value=9.1e-13 Score=92.16 Aligned_cols=74 Identities=18% Similarity=0.379 Sum_probs=63.5
Q ss_pred cceeEEeehhhH-hhhhhcCCCcchhhchhHHHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEE
Q psy14193 22 SKLKVFLNIWKM-ALKLKMNPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAY 100 (239)
Q Consensus 22 ~~~~v~v~~~~~-~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~af 100 (239)
..+.|||+++.. .... ++|+++|++||.|.+|++ ++||||
T Consensus 21 ~~~~l~V~nLp~~~~t~--------------~~L~~~F~~~G~v~~v~i-------------------------~~g~af 61 (97)
T 2xnq_A 21 MKSRLFIGNLPLKNVSK--------------EDLFRIFSPYGHIMQINI-------------------------KNAFGF 61 (97)
T ss_dssp TTCEEEEESCCSSCCCH--------------HHHHHHHGGGSCEEEEEE-------------------------CSSEEE
T ss_pred CCCEEEEeCCCcccCCH--------------HHHHHHHHhcCCEEEEEE-------------------------eCCEEE
Confidence 567899987764 4333 499999999999999984 158999
Q ss_pred EEeCCHHHHHHHHH-hCCCccCCeeEEEeccCCCC
Q psy14193 101 VRFKNLESVEKALE-MNGHVIDEHTIRVDKALTTT 134 (239)
Q Consensus 101 V~f~~~e~a~~Ai~-~~~~~l~g~~i~v~~~~~~~ 134 (239)
|+|.+.++|++|++ +|+..+.|+.|.|.++.+..
T Consensus 62 V~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 96 (97)
T 2xnq_A 62 IQFDNPQSVRDAIEXESQEMNFGKKLILEVSSSNA 96 (97)
T ss_dssp EEESSHHHHHHHHHHHTTSEETTEECEEEECCCCC
T ss_pred EEECCHHHHHHHHHHcCCCEECCEEEEEEecCCCC
Confidence 99999999999999 99999999999999987653
No 326
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.38 E-value=2.1e-13 Score=96.16 Aligned_cols=80 Identities=19% Similarity=0.300 Sum_probs=67.6
Q ss_pred cceeEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEE
Q psy14193 22 SKLKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYV 101 (239)
Q Consensus 22 ~~~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV 101 (239)
..+.|||+.+......+ +|+++|++||+|.+|++ +.+. ++.++|||||
T Consensus 8 ~~~~l~V~nLp~~~t~~--------------~l~~~F~~~G~i~~v~i-----------------~~~~-~g~~~g~afV 55 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDET--------------EIRSFFARYGSVKEVKI-----------------ITDR-TGVSKGYGFV 55 (102)
T ss_dssp EEEEEEEECCCTTCCHH--------------HHHHHHGGGSCEEEEEE-----------------EECT-TSCEEEEEEE
T ss_pred CCCEEEEeCCCCCCCHH--------------HHHHHHHhCCCeEEEEE-----------------EECC-CCCccceEEE
Confidence 45789998776554444 99999999999999984 4444 7788899999
Q ss_pred EeCCHHHHHHHHHhCCCccCCeeEEEeccCCCC
Q psy14193 102 RFKNLESVEKALEMNGHVIDEHTIRVDKALTTT 134 (239)
Q Consensus 102 ~f~~~e~a~~Ai~~~~~~l~g~~i~v~~~~~~~ 134 (239)
+|.+.++|++|++ ++..+.|+.|.|.++.+..
T Consensus 56 ~f~~~~~a~~Ai~-~~~~~~g~~l~v~~a~~~~ 87 (102)
T 2xs2_A 56 SFYNDVDVQKIVE-SQINFHGKKLKLGPAIRKQ 87 (102)
T ss_dssp EESSCCCHHHHTT-CCCEETTEECEEEEEEECC
T ss_pred EECCHHHHHHHHh-CCCeECCEEEEEEECCcCc
Confidence 9999999999999 9999999999999987654
No 327
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.38 E-value=1.4e-13 Score=99.22 Aligned_cols=84 Identities=15% Similarity=0.226 Sum_probs=67.5
Q ss_pred cceeEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEE
Q psy14193 22 SKLKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYV 101 (239)
Q Consensus 22 ~~~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV 101 (239)
..+.|||+++......+ +|+++|++||.|.+|.+ ..+..++.++|||||
T Consensus 24 ~~~~l~V~nLp~~~t~~--------------~l~~~f~~~G~v~~~~~-----------------~~~~~~g~~~g~afV 72 (115)
T 2cpx_A 24 PNKVLYLKNLSPRVTER--------------DLVSLFARFQEKKGPPI-----------------QFRMMTGRMRGQAFI 72 (115)
T ss_dssp CCSEEEEECCCTTCCHH--------------HHHHHTHHHHHSSSSCC-----------------EEEEECSSSCSEEEE
T ss_pred CCCEEEEeCCCCCCCHH--------------HHHHHHHHhCCccceEE-----------------EEEcCCCccceEEEE
Confidence 45789998876554443 99999999999954331 112226788899999
Q ss_pred EeCCHHHHHHHHH-hCCCccCCeeEEEeccCCCCCC
Q psy14193 102 RFKNLESVEKALE-MNGHVIDEHTIRVDKALTTTKS 136 (239)
Q Consensus 102 ~f~~~e~a~~Ai~-~~~~~l~g~~i~v~~~~~~~~~ 136 (239)
+|.+.++|++|++ +|+..+.|+.|.|.++.+....
T Consensus 73 ~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~~~~ 108 (115)
T 2cpx_A 73 TFPNKEIAWQALHLVNGYKLYGKILVIEFGKNKKQR 108 (115)
T ss_dssp ECSSHHHHHHHHHHSTTCBCSSCBCEEEECCCCSCC
T ss_pred EECCHHHHHHHHHHhCCCEeCCcEEEEEEccCCCCC
Confidence 9999999999999 9999999999999999877654
No 328
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.37 E-value=1.3e-12 Score=91.99 Aligned_cols=83 Identities=16% Similarity=0.161 Sum_probs=67.9
Q ss_pred cccceeEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceE
Q psy14193 20 LMSKLKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNA 99 (239)
Q Consensus 20 ~~~~~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~a 99 (239)
....+.|||+.+......+ +|+++|+.|+.| + ++.+..++.++|||
T Consensus 12 ~~~~~~l~V~nLp~~~t~~--------------~l~~~F~~~~~~---~-----------------~~~~~~~~~~~g~a 57 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEE--------------TLKESFDGSVRA---R-----------------IVTDRETGSSKGFG 57 (102)
T ss_dssp SCCCSSEEEECCCTTCCHH--------------HHHHTSTTCSEE---E-----------------EEECSSSCSEEEEE
T ss_pred CCCCCEEEEeCCCCccCHH--------------HHHHHhcCCeEE---E-----------------EEecCCCCCcCcEE
Confidence 3456788998776554444 999999988644 3 34466678889999
Q ss_pred EEEeCCHHHHHHHHH-hCCCccCCeeEEEeccCCCCCC
Q psy14193 100 YVRFKNLESVEKALE-MNGHVIDEHTIRVDKALTTTKS 136 (239)
Q Consensus 100 fV~f~~~e~a~~Ai~-~~~~~l~g~~i~v~~~~~~~~~ 136 (239)
||+|.+.++|++|++ +|+..+.|+.|.|.++.++...
T Consensus 58 fV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 95 (102)
T 2fc8_A 58 FVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGEG 95 (102)
T ss_dssp EEECSSHHHHHHHHHHHTTCEETTEECEEEECCCCCSS
T ss_pred EEEECCHHHHHHHHHHhCCCeECCeEEEEEEecCCCCC
Confidence 999999999999999 9999999999999999887653
No 329
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.37 E-value=9.7e-13 Score=93.79 Aligned_cols=76 Identities=14% Similarity=0.136 Sum_probs=65.1
Q ss_pred cceeEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEE
Q psy14193 22 SKLKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYV 101 (239)
Q Consensus 22 ~~~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV 101 (239)
.+.+|||+++......+ +|+++|++||+|.+|++ ..+ |||||
T Consensus 14 ~~~~l~V~nLp~~~t~~--------------~l~~~F~~~G~i~~~~i-----------------~~~-------g~afV 55 (108)
T 1x4c_A 14 SENRVVVSGLPPSGSWQ--------------DLKDHMREAGDVCYADV-----------------YRD-------GTGVV 55 (108)
T ss_dssp CCCEEEEESCCSSCCHH--------------HHHHHHGGGSCEEEEEE-----------------ETT-------TEEEE
T ss_pred CCCEEEEeCCCCCCCHH--------------HHHHHHHhcCCEeEEEE-----------------ecC-------CEEEE
Confidence 46789999876654444 99999999999999984 112 89999
Q ss_pred EeCCHHHHHHHHH-hCCCccCC-----eeEEEeccCCCCC
Q psy14193 102 RFKNLESVEKALE-MNGHVIDE-----HTIRVDKALTTTK 135 (239)
Q Consensus 102 ~f~~~e~a~~Ai~-~~~~~l~g-----~~i~v~~~~~~~~ 135 (239)
+|.+.++|++|++ +|+..+.| +.|.|.++.++..
T Consensus 56 ~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~~a~~~~~ 95 (108)
T 1x4c_A 56 EFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDGPRSP 95 (108)
T ss_dssp EESSHHHHHHHHHHSSSEEEECTTSCEEEEEEEESSCCSC
T ss_pred EECCHHHHHHHHHHHCcCCccCCcCcceEEEEEeCCCCCC
Confidence 9999999999999 99999999 9999999987654
No 330
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.37 E-value=6.4e-13 Score=92.68 Aligned_cols=75 Identities=17% Similarity=0.394 Sum_probs=64.5
Q ss_pred cceeEEeehhhH-hhhhhcCCCcchhhchhHHHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEE
Q psy14193 22 SKLKVFLNIWKM-ALKLKMNPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAY 100 (239)
Q Consensus 22 ~~~~v~v~~~~~-~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~af 100 (239)
..+.|||+.+.. .... ++|+++|++||+|.+|++ ++||||
T Consensus 9 ~~~~l~V~nlp~~~~t~--------------~~l~~~F~~~G~v~~v~i-------------------------~~g~af 49 (96)
T 2kvi_A 9 PKSRLFIGNLPLKNVSK--------------EDLFRIFSPYGHIMQINI-------------------------KNAFGF 49 (96)
T ss_dssp CCEEEEEESSTTSCCCH--------------HHHHHHHTTTCCCCEEEE-------------------------ETTEEE
T ss_pred CCCEEEEeCCCcccCCH--------------HHHHHHHHhcCCEEEEEE-------------------------eCCEEE
Confidence 567899988765 4333 499999999999999985 158999
Q ss_pred EEeCCHHHHHHHHH-hCCCccCCeeEEEeccCCCCC
Q psy14193 101 VRFKNLESVEKALE-MNGHVIDEHTIRVDKALTTTK 135 (239)
Q Consensus 101 V~f~~~e~a~~Ai~-~~~~~l~g~~i~v~~~~~~~~ 135 (239)
|+|.+.++|++|++ +|+..+.|++|.|.++.+...
T Consensus 50 V~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~ 85 (96)
T 2kvi_A 50 IQFDNPQSVRDAIECESQEMNFGKKLILEVSSSNAR 85 (96)
T ss_dssp EEESCHHHHHHHHHHHTCSSCBTTTBCEEEEECCCC
T ss_pred EEECCHHHHHHHHHHcCCCeeCCcEEEEEEcCcCCC
Confidence 99999999999999 999999999999999876644
No 331
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.37 E-value=7.2e-13 Score=95.04 Aligned_cols=75 Identities=12% Similarity=0.254 Sum_probs=61.1
Q ss_pred ceeEEe--ehhhHhhhhhcCCCcchhhchhHHHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEE
Q psy14193 23 KLKVFL--NIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAY 100 (239)
Q Consensus 23 ~~~v~v--~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~af 100 (239)
.+.||| +.+......+ +|+++|++||+|.+|.+ +. .+||||
T Consensus 25 t~~L~V~Ng~L~~~~te~--------------~L~~~F~~fG~v~~v~i---~~--------------------~rgfaF 67 (114)
T 2cq2_A 25 TQSLVVANGGLGNGVSRN--------------QLLPVLEKCGLVDALLM---PP--------------------NKPYSF 67 (114)
T ss_dssp CSEEEEETCTGGGTCCHH--------------HHHHHHHHHSCEEEEEC---CT--------------------TCSCEE
T ss_pred CCEEEEECCCCCCCCCHH--------------HHHHHHHhcCCeEEEEE---eC--------------------CCCEEE
Confidence 467999 6566554444 99999999999999874 11 268999
Q ss_pred EEeCCHHHHHHHHH-hCCCcc-----CCeeEEEeccCCCC
Q psy14193 101 VRFKNLESVEKALE-MNGHVI-----DEHTIRVDKALTTT 134 (239)
Q Consensus 101 V~f~~~e~a~~Ai~-~~~~~l-----~g~~i~v~~~~~~~ 134 (239)
|+|.+.++|++|++ |||..+ .|++|.|.++...+
T Consensus 68 V~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~v~~a~~~p 107 (114)
T 2cq2_A 68 ARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNFVEKVQ 107 (114)
T ss_dssp EEESSHHHHHHHHHHTTTCEEECTTSCEEECEEEEESCCC
T ss_pred EEECCHHHHHHHHHHhCCCEEccccCCCcEEEEEecccCc
Confidence 99999999999999 999988 68999998876443
No 332
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.37 E-value=1.9e-13 Score=101.89 Aligned_cols=80 Identities=16% Similarity=0.086 Sum_probs=63.9
Q ss_pred cceeEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEE
Q psy14193 22 SKLKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYV 101 (239)
Q Consensus 22 ~~~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV 101 (239)
.++.|||+++...... ++|+++|++|| |.+|+ ++.|++ ++++|||||
T Consensus 45 ~~~~lfV~nLp~~~te--------------~dL~~~F~~~G-i~~v~-----------------i~~d~~-g~srGfaFV 91 (139)
T 2hgn_A 45 TGHCVHMRGLPYKATE--------------NDIYNFFSPLN-PVRVH-----------------IEIGPD-GRVTGEADV 91 (139)
T ss_dssp CCCCEECCSCCTTCCH--------------HHHHHHHCSCC-CSEEE-----------------CCCSSS-SCSSCCCEE
T ss_pred CCCEEEEeCCCCCCCH--------------HHHHHHHHhcC-CeEEE-----------------EEECCC-CCCceEEEE
Confidence 3456666655544333 59999999999 66887 334444 778899999
Q ss_pred EeCCHHHHHHHHHhCCCccCCeeEEEeccCCCC
Q psy14193 102 RFKNLESVEKALEMNGHVIDEHTIRVDKALTTT 134 (239)
Q Consensus 102 ~f~~~e~a~~Ai~~~~~~l~g~~i~v~~~~~~~ 134 (239)
+|.+.++|++|+++|+..+.|+.|.|.++.+..
T Consensus 92 ~F~~~e~A~~Al~~~g~~l~gR~i~V~~a~~~~ 124 (139)
T 2hgn_A 92 EFATHEEAVAAMSKDRANMQHRYIELFLNSTTG 124 (139)
T ss_dssp ECSHHHHHHHHTTCCSCSSSSCCCCCEECCCSC
T ss_pred EeCCHHHHHHHHhhCCCEECCEEEEEEECCCCC
Confidence 999999999999999999999999999887664
No 333
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.37 E-value=1.6e-12 Score=89.45 Aligned_cols=76 Identities=17% Similarity=0.317 Sum_probs=65.1
Q ss_pred cceeEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEE
Q psy14193 22 SKLKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYV 101 (239)
Q Consensus 22 ~~~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV 101 (239)
..++|||+.+...... ++|+++|++||+|.+|++. +|||||
T Consensus 7 ~~~~l~V~nlp~~~t~--------------~~l~~~F~~~G~i~~v~~~-------------------------~g~afV 47 (90)
T 2dnq_A 7 GMVKLFIGNLPREATE--------------QEIRSLFEQYGKVLECDII-------------------------KNYGFV 47 (90)
T ss_dssp CCEEEEEESCCSSCCH--------------HHHHHHHHTSSCEEEEEEE-------------------------TTEEEE
T ss_pred CCeEEEEeCCCCCCCH--------------HHHHHHHHhCCCEEEEEEE-------------------------CCEEEE
Confidence 4578899877555443 4999999999999999851 489999
Q ss_pred EeCCHHHHHHHHH-hCCCccCCeeEEEeccCCCCCC
Q psy14193 102 RFKNLESVEKALE-MNGHVIDEHTIRVDKALTTTKS 136 (239)
Q Consensus 102 ~f~~~e~a~~Ai~-~~~~~l~g~~i~v~~~~~~~~~ 136 (239)
+|.+.++|++|++ +|+..+.|+.|.|.++.++...
T Consensus 48 ~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 83 (90)
T 2dnq_A 48 HIEDKTAAEDAIRNLHHYKLHGVNINVEASKNKSKA 83 (90)
T ss_dssp EESSHHHHHHHHHHHTTCBCSSCBCEEECSSCCCCC
T ss_pred EECCHHHHHHHHHHhcCCccCCcEEEEEECCCCCCC
Confidence 9999999999999 9999999999999999877654
No 334
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.37 E-value=7.8e-13 Score=89.93 Aligned_cols=73 Identities=15% Similarity=0.293 Sum_probs=61.6
Q ss_pred cceeEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEE
Q psy14193 22 SKLKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYV 101 (239)
Q Consensus 22 ~~~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV 101 (239)
..+.|||+.+...... ++|+++|++||+|.+|++. +++|||||
T Consensus 11 ~~~~l~V~~l~~~~t~--------------~~l~~~f~~~G~i~~~~~~-----------------------~~kg~afV 53 (85)
T 2ytc_A 11 TITTLYVGGLGDTITE--------------TDLRNHFYQFGEIRTITVV-----------------------QRQQCAFI 53 (85)
T ss_dssp SCCCEEEECCTTTSCH--------------HHHHHHHHTTSCEEEEEEE-----------------------GGGTEEEE
T ss_pred CccEEEEcCCCCCCCH--------------HHHHHHHHhCCCEeEEEEE-----------------------CCCCEEEE
Confidence 4578888877655444 4999999999999999851 13689999
Q ss_pred EeCCHHHHHHHHH-h-CCCccCCeeEEEeccC
Q psy14193 102 RFKNLESVEKALE-M-NGHVIDEHTIRVDKAL 131 (239)
Q Consensus 102 ~f~~~e~a~~Ai~-~-~~~~l~g~~i~v~~~~ 131 (239)
+|.+.++|++|++ + ++..+.|++|.|.+++
T Consensus 54 ~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ak 85 (85)
T 2ytc_A 54 QFATRQAAEVAAEKSFNKLIVNGRRLNVKWGR 85 (85)
T ss_dssp EESSHHHHHHHHHTTTTTCEETTEECCEEECC
T ss_pred EECCHHHHHHHHHHhcCCeeECCCEEEEEecC
Confidence 9999999999999 8 9999999999999874
No 335
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.36 E-value=5.6e-13 Score=93.14 Aligned_cols=77 Identities=16% Similarity=0.304 Sum_probs=63.9
Q ss_pred cceeEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEE
Q psy14193 22 SKLKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYV 101 (239)
Q Consensus 22 ~~~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV 101 (239)
..+.|||+++...... ++|+++|++||+|. +++ . ++.++|||||
T Consensus 18 ~~~~l~V~nL~~~~t~--------------~~l~~~F~~~G~v~-~~~---~------------------~~~~~g~afV 61 (97)
T 2e5j_A 18 LAADVYVGNLPRDARV--------------SDLKRALRELGSVP-LRL---T------------------WQGPRRRAFL 61 (97)
T ss_dssp CCCEEEEECCCTTCCH--------------HHHHHHHHHTTCCC-SEE---E------------------EETTTTEEEE
T ss_pred CCCEEEEeCCCCcCcH--------------HHHHHHHHhcCCEE-EEE---E------------------cCCCCcEEEE
Confidence 3568899877655444 49999999999996 553 1 2356799999
Q ss_pred EeCCHHHHHHHHH-hCCCccCCeeEEEeccCCCC
Q psy14193 102 RFKNLESVEKALE-MNGHVIDEHTIRVDKALTTT 134 (239)
Q Consensus 102 ~f~~~e~a~~Ai~-~~~~~l~g~~i~v~~~~~~~ 134 (239)
+|.+.++|++|++ +|+..+.|+.|.|.++.++.
T Consensus 62 ~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 95 (97)
T 2e5j_A 62 HYPDSAAAQQAVSCLQGLRLGTDTLRVALARQQR 95 (97)
T ss_dssp ECSSHHHHHHHHHHHTTCCSSSSCCEEEECCCCC
T ss_pred EECCHHHHHHHHHHhCCCEECCcEEEEEEcCCCC
Confidence 9999999999999 99999999999999998765
No 336
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.36 E-value=1.6e-12 Score=89.82 Aligned_cols=76 Identities=13% Similarity=0.216 Sum_probs=65.0
Q ss_pred ccceeEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEE
Q psy14193 21 MSKLKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAY 100 (239)
Q Consensus 21 ~~~~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~af 100 (239)
...+.|||+++...... ++|+++|++||+|.+|++. ++|||
T Consensus 8 ~~~~~l~V~nLp~~~t~--------------~~l~~~F~~~G~v~~v~~~-------------------------~~~af 48 (92)
T 2dgt_A 8 KASTKLHVGNISPTCTN--------------QELRAKFEEYGPVIECDIV-------------------------KDYAF 48 (92)
T ss_dssp CSSEEEEEESCCSSCCH--------------HHHHHHHHTTSCCCEEEEC-------------------------SSEEE
T ss_pred CCCCEEEEeCCCCCCCH--------------HHHHHHHHhcCCeEEEEEE-------------------------CCEEE
Confidence 35678999887655444 3999999999999999851 35999
Q ss_pred EEeCCHHHHHHHHH-hCCCccCCeeEEEeccCCCCC
Q psy14193 101 VRFKNLESVEKALE-MNGHVIDEHTIRVDKALTTTK 135 (239)
Q Consensus 101 V~f~~~e~a~~Ai~-~~~~~l~g~~i~v~~~~~~~~ 135 (239)
|+|.+.++|++|++ +|+..+.|+.|.|.++.++..
T Consensus 49 V~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~ 84 (92)
T 2dgt_A 49 VHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLR 84 (92)
T ss_dssp EEESCHHHHHHHHHHHTTEEETTEEEEEEESSCCCS
T ss_pred EEECCHHHHHHHHHHhCCCeeCCcEEEEEEccCCCC
Confidence 99999999999999 999999999999999987754
No 337
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.36 E-value=1.2e-12 Score=90.04 Aligned_cols=77 Identities=19% Similarity=0.284 Sum_probs=65.8
Q ss_pred ccceeEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEE
Q psy14193 21 MSKLKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAY 100 (239)
Q Consensus 21 ~~~~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~af 100 (239)
-..+.|||+++......+ +|+++|++||+|.+|++. +||||
T Consensus 7 ~~~~~l~V~nlp~~~t~~--------------~l~~~F~~~G~v~~~~~~-------------------------~~~af 47 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQ--------------ELRSLFERRGRVIECDVV-------------------------KDYAF 47 (90)
T ss_dssp CCSCCEEEESCCTTCCHH--------------HHHHHHHHHSCEEEEEEC-------------------------SSCEE
T ss_pred CCCCEEEEeCCCCCCCHH--------------HHHHHHHcCCCEEEEEEE-------------------------CCEEE
Confidence 356789998876654444 999999999999999851 35999
Q ss_pred EEeCCHHHHHHHHH-hCCCccCCeeEEEeccCCCCCC
Q psy14193 101 VRFKNLESVEKALE-MNGHVIDEHTIRVDKALTTTKS 136 (239)
Q Consensus 101 V~f~~~e~a~~Ai~-~~~~~l~g~~i~v~~~~~~~~~ 136 (239)
|+|.+.++|++|++ +|+..+.|+.|.|.++.+....
T Consensus 48 V~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 84 (90)
T 2dnp_A 48 VHMEKEADAKAAIAQLNGKEVKGKRINVELSTKGQKK 84 (90)
T ss_dssp EEESCHHHHHHHHHHHTTCEETTEECEEEESCCCCCC
T ss_pred EEECCHHHHHHHHHHhCCCEECCcEEEEEECCCCCCC
Confidence 99999999999999 9999999999999999877544
No 338
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.36 E-value=1e-12 Score=93.80 Aligned_cols=78 Identities=21% Similarity=0.335 Sum_probs=65.5
Q ss_pred ccceeEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEE
Q psy14193 21 MSKLKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAY 100 (239)
Q Consensus 21 ~~~~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~af 100 (239)
...+.|||+.+...... ++|+++|++||+|.+|++. . .+||||
T Consensus 23 ~~~~~l~V~nl~~~~t~--------------~~l~~~F~~~G~i~~v~i~-----------------~------~~g~af 65 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTD--------------QLMRQTFSPFGQIMEIRVF-----------------P------EKGYSF 65 (109)
T ss_dssp SSCCEEEEECCSSCCCH--------------HHHHHHHHHHSCEEEEEEE-----------------T------TTTEEE
T ss_pred CCCcEEEEeCCCCCCCH--------------HHHHHHHHhcCCeEEEEEe-----------------C------CCCEEE
Confidence 35678888877655443 4999999999999999851 1 168999
Q ss_pred EEeCCHHHHHHHHH-hCCCccCCeeEEEeccCCCCC
Q psy14193 101 VRFKNLESVEKALE-MNGHVIDEHTIRVDKALTTTK 135 (239)
Q Consensus 101 V~f~~~e~a~~Ai~-~~~~~l~g~~i~v~~~~~~~~ 135 (239)
|+|.+.++|++|++ +++..+.|+.|.|.++.+...
T Consensus 66 V~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 101 (109)
T 1x4g_A 66 VRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESPD 101 (109)
T ss_dssp EEESSHHHHHHHHHHHTTCEETTEECEEECCCCCCS
T ss_pred EEECCHHHHHHHHHHcCCCEECCcEEEEEecCCCCC
Confidence 99999999999998 999999999999999987754
No 339
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.36 E-value=5.4e-13 Score=97.69 Aligned_cols=79 Identities=20% Similarity=0.165 Sum_probs=64.8
Q ss_pred cceeEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccCCcee--EEEEeecccccCCCccceeeecccccCCCCcceE
Q psy14193 22 SKLKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGEVE--TVRFRSVPVADITLPRKACIKMNKVHEKRTNMNA 99 (239)
Q Consensus 22 ~~~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~I~--~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~a 99 (239)
....|||+.+......+ +|+++|++| .|. +|+ ++.|+. ++++|||
T Consensus 41 ~~~~lfVgnLp~~~te~--------------dL~~~F~~~-~i~~~~v~-----------------i~~d~~-GrsrGfa 87 (126)
T 2hgm_A 41 NDGFVRLRGLPFGCTKE--------------EIVQFFSGL-EIVPNGIT-----------------LPVDPE-GKITGEA 87 (126)
T ss_dssp SCCEEEEECCCTTCCHH--------------HHHHHTTTS-CEEEEEEE-----------------CCCCSS-SSSCSEE
T ss_pred CCCEEEEeCCCCCCCHH--------------HHHHHHhcC-CceeeEEE-----------------EEECCC-CCCceEE
Confidence 45788988877665555 999999999 566 777 344555 7788999
Q ss_pred EEEeCCHHHHHHHHHhCCCccCCeeEEEeccCCC
Q psy14193 100 YVRFKNLESVEKALEMNGHVIDEHTIRVDKALTT 133 (239)
Q Consensus 100 fV~f~~~e~a~~Ai~~~~~~l~g~~i~v~~~~~~ 133 (239)
||+|.++++|++|++.++..++|+.|.|.++.+.
T Consensus 88 FV~F~~~e~A~~Al~~~~~~l~gR~I~V~~a~~~ 121 (126)
T 2hgm_A 88 FVQFASQELAEKALGKHKERIGHRYIEVFKSSQE 121 (126)
T ss_dssp EEEESSTTHHHHHHTTTTCCBTTBCCCCEEECHH
T ss_pred EEEECCHHHHHHHHHHCCCEECCEEEEEEECCHH
Confidence 9999999999999997789999999999887643
No 340
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.35 E-value=1.5e-12 Score=92.84 Aligned_cols=77 Identities=25% Similarity=0.468 Sum_probs=65.3
Q ss_pred cccceeEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceE
Q psy14193 20 LMSKLKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNA 99 (239)
Q Consensus 20 ~~~~~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~a 99 (239)
....+.|||+++...... ++|+++|++||+|.+|++. +|||
T Consensus 28 ~~~~~~l~V~nLp~~~t~--------------~~L~~~F~~~G~i~~v~i~-------------------------kg~a 68 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQE--------------SELNEIFGPFGPMKEVKIL-------------------------NGFA 68 (108)
T ss_dssp CCSCSEEEECSSCTTCCH--------------HHHHHHHTTTSCCCEEEEE-------------------------TTEE
T ss_pred CCCCCEEEEECCCCCCCH--------------HHHHHHHHhcCCEEEEEEE-------------------------CCEE
Confidence 446678888876555443 4999999999999999851 5899
Q ss_pred EEEeCCHHHHHHHHH-hCCCccCCeeEEEeccCCCCC
Q psy14193 100 YVRFKNLESVEKALE-MNGHVIDEHTIRVDKALTTTK 135 (239)
Q Consensus 100 fV~f~~~e~a~~Ai~-~~~~~l~g~~i~v~~~~~~~~ 135 (239)
||+|.+.++|++|++ +|+..+.|+.|.|.++.+...
T Consensus 69 fV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 105 (108)
T 2jvo_A 69 FVEFEEAESAAKAIEEVHGKSFANQPLEVVYSKLPAK 105 (108)
T ss_dssp EEECSSHHHHHHHHHHHTTCEETTEECEEESCSCCC-
T ss_pred EEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCCCC
Confidence 999999999999999 999999999999999987754
No 341
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.34 E-value=9.8e-13 Score=102.15 Aligned_cols=81 Identities=14% Similarity=0.246 Sum_probs=67.6
Q ss_pred cceeEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEE
Q psy14193 22 SKLKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYV 101 (239)
Q Consensus 22 ~~~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV 101 (239)
.+..|||+++...... ++|+++|++||+|.+|.+ ..+. ++.++|||||
T Consensus 87 ~~~~l~V~nLp~~~te--------------~~L~~~F~~~G~I~~v~i-----------------~~d~-~g~~kG~afV 134 (177)
T 2f3j_A 87 TGAKLLVSNLDFGVSD--------------ADIQELFAEFGTLKKAAV-----------------DYDR-SGRSLGTADV 134 (177)
T ss_dssp TCEEEEEECCCSCCCH--------------HHHHHHHHHTSCCSEEEE-----------------CCCT-TSSCSCCEEE
T ss_pred CCCEEEEeCCCCCCCH--------------HHHHHHHHhcCCeEEEEE-----------------EECC-CCCEeeEEEE
Confidence 3567888776544333 499999999999999984 3344 6778899999
Q ss_pred EeCCHHHHHHHHH-hCCCccCCeeEEEeccCCCC
Q psy14193 102 RFKNLESVEKALE-MNGHVIDEHTIRVDKALTTT 134 (239)
Q Consensus 102 ~f~~~e~a~~Ai~-~~~~~l~g~~i~v~~~~~~~ 134 (239)
+|.+.++|++|++ +|+..+.|+.|.|.++....
T Consensus 135 ~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~~~~ 168 (177)
T 2f3j_A 135 HFERRADALKAMKQYKGVPLDGRPMDIQLVASQI 168 (177)
T ss_dssp EESCHHHHHHHHHHSTTCBCSSSBCEEEEESSGG
T ss_pred EeCCHHHHHHHHHHhCCCEECCEEEEEEEecCCC
Confidence 9999999999999 99999999999999987654
No 342
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.34 E-value=8.8e-13 Score=91.81 Aligned_cols=79 Identities=18% Similarity=0.242 Sum_probs=65.4
Q ss_pred ccceeEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEE
Q psy14193 21 MSKLKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAY 100 (239)
Q Consensus 21 ~~~~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~af 100 (239)
-..+.|||+++...... ++|+++|++||+|..+ ..++.++||||
T Consensus 14 ~~~~~l~V~nL~~~~t~--------------~~l~~~F~~~g~v~~~----------------------~~~~~~~g~af 57 (96)
T 1fjc_A 14 RAARTLLAKNLSFNITE--------------DELKEVFEDALEIRLV----------------------SQDGKSKGIAY 57 (96)
T ss_dssp TGGGEEEEESCCSSCCH--------------HHHHHHHCSEEEECCE----------------------EETTEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCH--------------HHHHHHHhhCCcEEEe----------------------CCCCCcceEEE
Confidence 35678888877555443 4999999999988654 23567789999
Q ss_pred EEeCCHHHHHHHHH-hCCCccCCeeEEEeccCCCCC
Q psy14193 101 VRFKNLESVEKALE-MNGHVIDEHTIRVDKALTTTK 135 (239)
Q Consensus 101 V~f~~~e~a~~Ai~-~~~~~l~g~~i~v~~~~~~~~ 135 (239)
|+|.+.++|++|++ +++..+.|+.|.|.++.++..
T Consensus 58 V~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 93 (96)
T 1fjc_A 58 IEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKGG 93 (96)
T ss_dssp EEESSHHHHHHHHHHTTEEEETTEEEEEEECSSSCC
T ss_pred EEECCHHHHHHHHHHhCCCEECCeEEEEEEcCCCCC
Confidence 99999999999999 999999999999999987654
No 343
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.34 E-value=1.7e-12 Score=91.71 Aligned_cols=76 Identities=20% Similarity=0.325 Sum_probs=65.1
Q ss_pred cceeEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEE
Q psy14193 22 SKLKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYV 101 (239)
Q Consensus 22 ~~~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV 101 (239)
..+.|||+++......+ +|+++|++||+|.+|++. +|||||
T Consensus 10 ~~~~l~V~nl~~~~t~~--------------~l~~~F~~~G~i~~v~~~-------------------------~~~afV 50 (103)
T 2dgu_A 10 KVKVLFVRNLANTVTEE--------------ILEKAFSQFGKLERVKKL-------------------------KDYAFI 50 (103)
T ss_dssp CCCCEEEECCCTTCCHH--------------HHHHHHHHHSCEEEEEEC-------------------------SSCEEE
T ss_pred CCCEEEEeCCCCCCCHH--------------HHHHHHHhcCCEEEEEEE-------------------------CCEEEE
Confidence 45789998776554444 999999999999999851 469999
Q ss_pred EeCCHHHHHHHHH-hCCCccCCeeEEEeccCCCCCC
Q psy14193 102 RFKNLESVEKALE-MNGHVIDEHTIRVDKALTTTKS 136 (239)
Q Consensus 102 ~f~~~e~a~~Ai~-~~~~~l~g~~i~v~~~~~~~~~ 136 (239)
+|.+.++|++|++ +|+..+.|+.|.|.++.+....
T Consensus 51 ~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 86 (103)
T 2dgu_A 51 HFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQK 86 (103)
T ss_dssp EESSHHHHHHHHHHHTTEEETTEEEEEEECCCCCCC
T ss_pred EeCCHHHHHHHHHHHCCCccCCCEEEEEEcCCCccc
Confidence 9999999999999 9999999999999999877653
No 344
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.33 E-value=2e-12 Score=94.15 Aligned_cols=61 Identities=20% Similarity=0.470 Sum_probs=55.3
Q ss_pred HHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEEEeCCHHHHHHHHH-hCCCccCCeeEEEecc
Q psy14193 52 SSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALE-MNGHVIDEHTIRVDKA 130 (239)
Q Consensus 52 ~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV~f~~~e~a~~Ai~-~~~~~l~g~~i~v~~~ 130 (239)
++|+++|++||+|.+|.+ ..++|||||+|.+.++|++|++ +|+..+.|+.|.|.++
T Consensus 52 ~~L~~~F~~~G~I~~v~i-----------------------~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a 108 (121)
T 2bz2_A 52 TLLRGAFSPFGNIIDLSM-----------------------DPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 108 (121)
T ss_dssp HHHHHHHSTTCCCSCEEE-----------------------ETTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred HHHHHHHHccCCEEEEEE-----------------------eCCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEe
Confidence 599999999999999985 1457999999999999999998 9999999999999999
Q ss_pred CCCCC
Q psy14193 131 LTTTK 135 (239)
Q Consensus 131 ~~~~~ 135 (239)
.+...
T Consensus 109 ~~~~~ 113 (121)
T 2bz2_A 109 RKQPM 113 (121)
T ss_dssp CSSCC
T ss_pred CCCCC
Confidence 87754
No 345
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.33 E-value=3.3e-13 Score=98.51 Aligned_cols=79 Identities=16% Similarity=0.239 Sum_probs=64.9
Q ss_pred cceeEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccCCce----eEEEEeecccccCCCccceeeecccccCCCCcc
Q psy14193 22 SKLKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGEV----ETVRFRSVPVADITLPRKACIKMNKVHEKRTNM 97 (239)
Q Consensus 22 ~~~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~I----~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G 97 (239)
....|||+.+......+ +|+++|++||+| .+|+| +.+ .+++++|
T Consensus 22 ~~~~v~V~nLp~~~te~--------------dl~~~F~~~g~v~g~v~~v~i-----------------~~d-~~gr~~G 69 (123)
T 2dha_A 22 NQVIVRMRGLPFTATAE--------------EVVAFFGQHCPITGGKEGILF-----------------VTY-PDGRPTG 69 (123)
T ss_dssp SCCEEEECSCCTTCCHH--------------HHHHHHHTTSCCTTGGGGEEE-----------------EEC-TTSCEEE
T ss_pred CCCEEEEeCCCCCCCHH--------------HHHHHHHhhCCccCCcceEEE-----------------EEC-CCCCEee
Confidence 35688888877665554 999999999986 57773 334 3678889
Q ss_pred eEEEEeCCHHHHHHHHHhCCCccCCeeEEEeccCC
Q psy14193 98 NAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALT 132 (239)
Q Consensus 98 ~afV~f~~~e~a~~Ai~~~~~~l~g~~i~v~~~~~ 132 (239)
||||+|.+.++|++|++.|+..++++.|.|..+.+
T Consensus 70 ~aFV~F~~~~~A~~Al~~~~~~l~gR~i~V~~a~~ 104 (123)
T 2dha_A 70 DAFVLFACEEYAQNALRKHKDLLGKRYIELFRSTA 104 (123)
T ss_dssp EEEECCSSHHHHHHHHTTTTEESSSCEECCEEECH
T ss_pred EEEEEECCHHHHHHHHHhCCCeeCCeEEEEEECCH
Confidence 99999999999999999999999999999887643
No 346
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.33 E-value=4.1e-12 Score=88.99 Aligned_cols=75 Identities=27% Similarity=0.366 Sum_probs=64.7
Q ss_pred cceeEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccC--CceeEEEEeecccccCCCccceeeecccccCCCCcceE
Q psy14193 22 SKLKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPY--GEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNA 99 (239)
Q Consensus 22 ~~~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~--G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~a 99 (239)
..+.|||+++......+ +|+++|++| |.|.+|++ .+|||
T Consensus 14 ~~~~l~V~nLp~~~t~~--------------~l~~~F~~~g~g~v~~~~~-------------------------~~g~a 54 (99)
T 2cpd_A 14 SVKILYVRNLMLSTSEE--------------MIEKEFNNIKPGAVERVKK-------------------------IRDYA 54 (99)
T ss_dssp CCCEEEEESCCTTCCHH--------------HHHHHHHTTSTTCEEEEEE-------------------------CSSEE
T ss_pred CcCEEEEeCCCCCCCHH--------------HHHHHHHhcCCcceEEEEE-------------------------eCCeE
Confidence 56789998876654444 999999999 99999874 25799
Q ss_pred EEEeCCHHHHHHHHH-hCCCccCCeeEEEeccCCCCC
Q psy14193 100 YVRFKNLESVEKALE-MNGHVIDEHTIRVDKALTTTK 135 (239)
Q Consensus 100 fV~f~~~e~a~~Ai~-~~~~~l~g~~i~v~~~~~~~~ 135 (239)
||+|.+.++|++|++ +|+..+.|+.|.|.++.+...
T Consensus 55 fV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 91 (99)
T 2cpd_A 55 FVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKPVDK 91 (99)
T ss_dssp EEEESSHHHHHHHHHHHSSEEETTEEEEEECCCCCCC
T ss_pred EEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECCCCCC
Confidence 999999999999999 999999999999999987754
No 347
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.32 E-value=2.1e-12 Score=93.49 Aligned_cols=69 Identities=16% Similarity=0.196 Sum_probs=56.0
Q ss_pred hHHHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEEEeCCHHHHHHHHH-hCCCccCCeeEEEe
Q psy14193 50 ALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALE-MNGHVIDEHTIRVD 128 (239)
Q Consensus 50 r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV~f~~~e~a~~Ai~-~~~~~l~g~~i~v~ 128 (239)
-.+||++.|++||+|.+|.+ +.+..+ +..+++++|++||+|.+.++|.+|++ |||..+.|+.|.|.
T Consensus 38 leedl~eef~k~G~V~~v~I---~~~~~~----------~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~GR~i~v~ 104 (118)
T 3ue2_A 38 LEGEVTEECGKFGAVNRVII---YQEKQG----------EEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAE 104 (118)
T ss_dssp HHHHHHHHHTTTSCEEEEEE---EEEEES----------SSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred HHHHHHHHHhccCCEeEEEE---eecCCC----------cccCCcceEEEEEEECCHHHHHHHHHHHCCCEECCcEEEEE
Confidence 34799999999999999984 222111 01145678999999999999999999 99999999999998
Q ss_pred ccC
Q psy14193 129 KAL 131 (239)
Q Consensus 129 ~~~ 131 (239)
++.
T Consensus 105 ~~~ 107 (118)
T 3ue2_A 105 VYD 107 (118)
T ss_dssp EEC
T ss_pred EcC
Confidence 765
No 348
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.32 E-value=1.6e-12 Score=98.99 Aligned_cols=76 Identities=20% Similarity=0.333 Sum_probs=61.2
Q ss_pred eeEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEEEe
Q psy14193 24 LKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRF 103 (239)
Q Consensus 24 ~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV~f 103 (239)
..|||+++...... ++|+++|++||+|.+|++. ++.++|||||+|
T Consensus 47 l~l~VgNL~~~vte--------------d~L~~~Fs~fG~V~~V~i~---------------------~k~~rgfAFVeF 91 (164)
T 1sjr_A 47 LRIIVENLFYPVTL--------------DVLHQIFSKFGTVLKIITF---------------------TKNNQFQALLQY 91 (164)
T ss_dssp EEEEECSCCSCCCH--------------HHHHHHHHHHSCEEEEEEE---------------------ESSSCEEEEEEE
T ss_pred EEEEEeCcCCCCCH--------------HHHHHHHHhcCCEEEEEEE---------------------eCCCCCEEEEEE
Confidence 45667665444333 4999999999999999851 112468999999
Q ss_pred CCHHHHHHHHH-hCCCccCC--eeEEEeccCCCC
Q psy14193 104 KNLESVEKALE-MNGHVIDE--HTIRVDKALTTT 134 (239)
Q Consensus 104 ~~~e~a~~Ai~-~~~~~l~g--~~i~v~~~~~~~ 134 (239)
.+.++|++|++ |||..|.| +.|+|.++.++.
T Consensus 92 ~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~~~ 125 (164)
T 1sjr_A 92 ADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTS 125 (164)
T ss_dssp SCHHHHHHHHHHSTTBCSSSSCSCEEEEECSSSS
T ss_pred CCHHHHHHHHHHhCCCEecCCCcEEEEEEecCCc
Confidence 99999999999 99999965 999999998764
No 349
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.32 E-value=3.7e-12 Score=93.43 Aligned_cols=75 Identities=20% Similarity=0.319 Sum_probs=62.2
Q ss_pred eeEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcce-EEEE
Q psy14193 24 LKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMN-AYVR 102 (239)
Q Consensus 24 ~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~-afV~ 102 (239)
..|||+++......+ +|+++|++||+|.+|++. . +++|| |||+
T Consensus 29 L~I~V~NL~~~vte~--------------~L~~lFs~yG~V~~V~i~---~-------------------~~~gfqAFVe 72 (130)
T 3zzy_A 29 LRIIVENLFYPVTLD--------------VLHQIFSKFGTVLKIITF---T-------------------KNNQFQALLQ 72 (130)
T ss_dssp EEEEEESCCSCCCHH--------------HHHHHHTTSSCEEEEEEE---E-------------------ETTEEEEEEE
T ss_pred EEEEECCCCCCCCHH--------------HHHHHHhCcCCEEEEEEE---c-------------------CCCCcEEEEE
Confidence 467888776554444 999999999999999851 1 12577 9999
Q ss_pred eCCHHHHHHHHH-hCCCccCC--eeEEEeccCCCC
Q psy14193 103 FKNLESVEKALE-MNGHVIDE--HTIRVDKALTTT 134 (239)
Q Consensus 103 f~~~e~a~~Ai~-~~~~~l~g--~~i~v~~~~~~~ 134 (239)
|.+.++|++|++ |||..+.| +.|+|.++++..
T Consensus 73 f~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~~~ 107 (130)
T 3zzy_A 73 YADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTS 107 (130)
T ss_dssp ESCHHHHHHHHHHHTTCEEETTEEEEEEEECSCSS
T ss_pred ECCHHHHHHHHHHcCCCeecCCCcEEEEEecCCCc
Confidence 999999999999 99999988 999999998763
No 350
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.31 E-value=4.7e-12 Score=90.84 Aligned_cols=64 Identities=14% Similarity=0.235 Sum_probs=55.5
Q ss_pred hHHHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEEEeCCHHHHHHHHH-hCCCccCCeeEEEe
Q psy14193 50 ALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALE-MNGHVIDEHTIRVD 128 (239)
Q Consensus 50 r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV~f~~~e~a~~Ai~-~~~~~l~g~~i~v~ 128 (239)
..++|+++|++||+|.+|.++ + ..++|||||+|.+.++|++|++ +||..+.|++|.|.
T Consensus 39 ~e~~l~~~f~~~G~v~~v~i~------------------~---~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l~v~ 97 (112)
T 2dit_A 39 IREDLRVECSKFGQIRKLLLF------------------D---RHPDGVASVSFRDPEEADYCIQTLDGRWFGGRQITAQ 97 (112)
T ss_dssp HHHHHHHHGGGTSCCSEEEEE------------------T---TCTTCEEEEECSCHHHHHHHHHHSTTCEETTEECEEE
T ss_pred HHHHHHHHHHccCCEeEEEEe------------------c---CCCCEEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 347999999999999998631 1 1257999999999999999999 99999999999999
Q ss_pred ccCCCC
Q psy14193 129 KALTTT 134 (239)
Q Consensus 129 ~~~~~~ 134 (239)
++.+..
T Consensus 98 ~a~~~~ 103 (112)
T 2dit_A 98 AWDGTT 103 (112)
T ss_dssp ECCSCC
T ss_pred EeCCCC
Confidence 987754
No 351
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.31 E-value=1.7e-12 Score=92.79 Aligned_cols=74 Identities=26% Similarity=0.398 Sum_probs=63.0
Q ss_pred ceeEEeehhhHh-hhhhcCCCcchhhchhHHHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEE
Q psy14193 23 KLKVFLNIWKMA-LKLKMNPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYV 101 (239)
Q Consensus 23 ~~~v~v~~~~~~-~~~~~~~~~~~~k~~r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV 101 (239)
.++|||+.+... ... ++|+++|++||+|.+|++ ++|||||
T Consensus 27 ~~~l~V~nl~~~~~t~--------------~~l~~~F~~~G~v~~v~i-------------------------~~g~afV 67 (110)
T 1wf1_A 27 NSRVFIGNLNTALVKK--------------SDVETIFSKYGRVAGCSV-------------------------HKGYAFV 67 (110)
T ss_dssp SSEEEECSCCCSSCCH--------------HHHHHHHGGGSCCSEEEE-------------------------ETTEEEE
T ss_pred CcEEEEeCCCcccCCH--------------HHHHHHHHhCCCeEEEEE-------------------------eCCEEEE
Confidence 468898876554 444 499999999999999984 3589999
Q ss_pred EeCCHHHHHHHHH-hCCCccCCeeEEEeccCCCCC
Q psy14193 102 RFKNLESVEKALE-MNGHVIDEHTIRVDKALTTTK 135 (239)
Q Consensus 102 ~f~~~e~a~~Ai~-~~~~~l~g~~i~v~~~~~~~~ 135 (239)
+|.+.++|++|++ +++..+.|+.|.|.++.+...
T Consensus 68 ~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~ 102 (110)
T 1wf1_A 68 QYSNERHARAAVLGENGRVLAGQTLDINMAGEPKP 102 (110)
T ss_dssp ECSSSHHHHHHHHHHTTCEETTEECCEEESCCCCS
T ss_pred EECCHHHHHHHHHHcCCCEECCeEEEEEECCCCCC
Confidence 9999999999998 999999999999999975443
No 352
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.31 E-value=2.5e-12 Score=88.19 Aligned_cols=74 Identities=18% Similarity=0.191 Sum_probs=60.4
Q ss_pred eEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccC-CceeEEEEeecccccCCCccceeeecccccCCCCcceEEEEe
Q psy14193 25 KVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPY-GEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRF 103 (239)
Q Consensus 25 ~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~-G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV~f 103 (239)
-+||+++..+...+ .-..+|+++|++| |+|.+|. .|+|||.|
T Consensus 11 ~lYV~NL~~~~~~~----------~lk~~L~~lF~~yGG~Vl~Vt---------------------------gG~AfV~F 53 (96)
T 2diu_A 11 LLYVYNLPANKDGK----------SVSNRLRRLSDNCGGKVLSIT---------------------------GCSAILRF 53 (96)
T ss_dssp EEEEESCCTTSCHH----------HHHHHHHHHHHTTTCCEEECC---------------------------TTCEEEEE
T ss_pred EEEEeCCCCcCCHH----------HHHHHHHHHHHHcCCeeEEEe---------------------------cCEEEEEE
Confidence 38888876663332 1113688999999 5999863 28999999
Q ss_pred CCHHHHHHHHH-hCCCccCCeeEEEeccCCCCC
Q psy14193 104 KNLESVEKALE-MNGHVIDEHTIRVDKALTTTK 135 (239)
Q Consensus 104 ~~~e~a~~Ai~-~~~~~l~g~~i~v~~~~~~~~ 135 (239)
.+.++|++|++ |+|..+.|++|+|.++....+
T Consensus 54 ~~~esA~~A~~~l~G~~l~gr~i~v~~A~~~sd 86 (96)
T 2diu_A 54 INQDSAERAQKRMENEDVFGNRIIVSFTPKNRE 86 (96)
T ss_dssp SSHHHHHHHHHHHTTCCSSSSCCEEESSCCSCC
T ss_pred CCHHHHHHHHHHhcCCccCCceEEEEecCCCcc
Confidence 99999999999 999999999999999988764
No 353
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.30 E-value=1.7e-12 Score=89.81 Aligned_cols=77 Identities=13% Similarity=0.205 Sum_probs=63.6
Q ss_pred cceeEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccCCc-eeEEEEeecccccCCCccceeeecccccCCCCcceEE
Q psy14193 22 SKLKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGE-VETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAY 100 (239)
Q Consensus 22 ~~~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~-I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~af 100 (239)
..++|||+++...... ++|+++|++||. |..+.+ .++||||
T Consensus 7 ~~~~l~V~nLp~~~t~--------------~~l~~~F~~~G~vv~~~~~------------------------~~~g~af 48 (93)
T 2cqh_A 7 GMNKLYIGNLSPAVTA--------------DDLRQLFGDRKLPLAGQVL------------------------LKSGYAF 48 (93)
T ss_dssp CCCCEEEECCCTTCCH--------------HHHHHHHHHTTCCCSSCEE------------------------EETTEEE
T ss_pred CCcEEEEeCCCCCCCH--------------HHHHHHHHHcCCceEEEEE------------------------cCCCEEE
Confidence 4578899877655444 499999999999 665543 1368999
Q ss_pred EEeCCHHHHHHHHH-hCC-CccCCeeEEEeccCCCCCC
Q psy14193 101 VRFKNLESVEKALE-MNG-HVIDEHTIRVDKALTTTKS 136 (239)
Q Consensus 101 V~f~~~e~a~~Ai~-~~~-~~l~g~~i~v~~~~~~~~~ 136 (239)
|+|.+.++|++|++ +|+ ..+.|+.|.|.++.++..+
T Consensus 49 V~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~~~~ 86 (93)
T 2cqh_A 49 VDYPDQNWAIRAIETLSGKVELHGKIMEVDYSVSKKLR 86 (93)
T ss_dssp ECCSCHHHHHHHHHHHTTTCEETTEECEEEECCCCCCC
T ss_pred EEECCHHHHHHHHHHccCCeeECCEEEEEEEccCcccc
Confidence 99999999999999 999 9999999999999877654
No 354
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.30 E-value=7.5e-13 Score=99.12 Aligned_cols=88 Identities=17% Similarity=0.270 Sum_probs=67.4
Q ss_pred cceeEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEE
Q psy14193 22 SKLKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYV 101 (239)
Q Consensus 22 ~~~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV 101 (239)
....|||+++...... ++|+++|++||.|.+|.++ ++. -++...++.++|||||
T Consensus 44 ~~~~l~V~nLp~~~te--------------~~L~~~F~~~G~i~~~~~~-~~~-----------di~~~~~g~~~g~afV 97 (143)
T 3egn_A 44 PNCRIYVKNLAKHVQE--------------KDLKYIFGRYVDFSSETQR-IMF-----------DIRLMKEGRMKGQAFI 97 (143)
T ss_dssp CCSEEEEEEECTTCCH--------------HHHHHHHGGGCCTTCHHHH-HHC-----------EEEEEEETTTEEEEEE
T ss_pred CCCEEEEeCCCCCCCH--------------HHHHHHHHHhCCccccccc-cee-----------eEEeccCCCcccEEEE
Confidence 4567999887655444 3999999999999874100 000 0112346888999999
Q ss_pred EeCCHHHHHHHHH-hCCCccCCeeEEEeccCCCCC
Q psy14193 102 RFKNLESVEKALE-MNGHVIDEHTIRVDKALTTTK 135 (239)
Q Consensus 102 ~f~~~e~a~~Ai~-~~~~~l~g~~i~v~~~~~~~~ 135 (239)
+|.+.++|.+|++ +|+..+.|+.|.|.++.+...
T Consensus 98 ~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~~~ 132 (143)
T 3egn_A 98 GLPNEKAAAKALKEANGYVLFGKPMVVQFARSARP 132 (143)
T ss_dssp ECSSHHHHHHHHHHHTTBEETTEECEEEECCCSCC
T ss_pred EeCCHHHHHHHHHHhCCCEeCCcEEEEEECCCCCC
Confidence 9999999999999 999999999999999976543
No 355
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.29 E-value=6.3e-12 Score=90.44 Aligned_cols=77 Identities=18% Similarity=0.212 Sum_probs=59.0
Q ss_pred cceeEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccCCceeEEEEeecccccCCCccceeeecccccC---CCCcce
Q psy14193 22 SKLKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHE---KRTNMN 98 (239)
Q Consensus 22 ~~~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t---~~~~G~ 98 (239)
..++|||+.+......+ +|+++|++||+|. +.+ +.+..+ ++++||
T Consensus 7 ~~~~lfVgnLp~~~te~--------------~L~~~F~~~G~i~-~~~-----------------~~~~~~~~~g~~~G~ 54 (114)
T 2dnl_A 7 GSRKVFVGGLPPDIDED--------------EITASFRRFGPLV-VDW-----------------PHKAESKSYFPPKGY 54 (114)
T ss_dssp CCCCEEEECCCTTCCHH--------------HHHHHTTTTCCCC-EEC-----------------TTSSSSCCCSCTTSE
T ss_pred CCCEEEEcCCCCCCCHH--------------HHHHHHHhcCCEE-EEE-----------------eecCCCCCCCCcccE
Confidence 35789999876664444 9999999999998 662 334444 688999
Q ss_pred EEEEeCCHHHHHHHHH-hCCCccCCeeEEEeccCC
Q psy14193 99 AYVRFKNLESVEKALE-MNGHVIDEHTIRVDKALT 132 (239)
Q Consensus 99 afV~f~~~e~a~~Ai~-~~~~~l~g~~i~v~~~~~ 132 (239)
|||+|.+.++|++|++ ++ .+.|+.+.+..+.+
T Consensus 55 aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~~~~~~ 87 (114)
T 2dnl_A 55 AFLLFQEESSVQALIDACL--EEDGKLYLCVSSPT 87 (114)
T ss_dssp EEECCSSHHHHHHHHHHSE--EETTEEEEEECCSS
T ss_pred EEEEECCHHHHHHHHHhhh--hcCCcEEEeccCCC
Confidence 9999999999999999 73 36777777765443
No 356
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.28 E-value=4.1e-12 Score=111.88 Aligned_cols=81 Identities=16% Similarity=0.276 Sum_probs=68.9
Q ss_pred eeEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEEEe
Q psy14193 24 LKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRF 103 (239)
Q Consensus 24 ~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV~f 103 (239)
+.|||+++...... ++|.++|++||+|.+|. |+.+..++.++|||||+|
T Consensus 103 ~~lfV~nL~~~~te--------------~~L~~~F~~~G~I~~v~-----------------i~~d~~tg~~kG~aFV~F 151 (437)
T 3pgw_S 103 KTLFVARVNYDTTE--------------SKLRREFEVYGPIKRIH-----------------MVYSKRSGKPRGYAFIEY 151 (437)
T ss_pred CEEEEeCCCCCCCH--------------HHHHHHHHHcCCeeEEE-----------------eeccCCCCCccceEEEee
Confidence 57788776554433 49999999999999988 355667888999999999
Q ss_pred CCHHHHHHHHH-hCCCccCCeeEEEeccCCCCC
Q psy14193 104 KNLESVEKALE-MNGHVIDEHTIRVDKALTTTK 135 (239)
Q Consensus 104 ~~~e~a~~Ai~-~~~~~l~g~~i~v~~~~~~~~ 135 (239)
.+.++|.+||+ ||+..|.|+.|.|.++.+...
T Consensus 152 ~~~e~A~~Ai~~lng~~i~gr~i~V~~a~~~~~ 184 (437)
T 3pgw_S 152 EHERDMHSAYKHADGKKIDGRRVLVDVERGRTV 184 (437)
T ss_pred ccHHHHHHHHHHcCCCEECCEEEEEEEeCCCCC
Confidence 99999999998 999999999999999986643
No 357
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.28 E-value=3.2e-12 Score=87.59 Aligned_cols=74 Identities=15% Similarity=0.216 Sum_probs=63.0
Q ss_pred cceeEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEE
Q psy14193 22 SKLKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYV 101 (239)
Q Consensus 22 ~~~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV 101 (239)
+.++|||+.+...... ++|+++|++| +|.+|++. +++|||||
T Consensus 4 ~~~~l~V~nLp~~~t~--------------~~l~~~F~~~-~v~~~~i~-----------------------~~~g~afV 45 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNC--------------QEVHDLLKDY-DLKYCYVD-----------------------RNKRTAFV 45 (88)
T ss_dssp CCCCEEEESCCSSCCH--------------HHHHHHTCSS-CCCCEEEE-----------------------GGGTEEEE
T ss_pred CCCEEEEeCCCCCCCH--------------HHHHHHHhhC-CeEEEEEe-----------------------CCCcEEEE
Confidence 4578899887655444 4999999999 99998841 35799999
Q ss_pred EeCCHHHHHHHHH-hCCCccCCeeEEEeccCCC
Q psy14193 102 RFKNLESVEKALE-MNGHVIDEHTIRVDKALTT 133 (239)
Q Consensus 102 ~f~~~e~a~~Ai~-~~~~~l~g~~i~v~~~~~~ 133 (239)
+|.+.++|++|++ +|+..+.|++|.|.++...
T Consensus 46 ~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 78 (88)
T 1wg1_A 46 TLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTD 78 (88)
T ss_dssp CCSCHHHHHHHHHHHTTEEETTEEEEEEECCCC
T ss_pred EECCHHHHHHHHHHhCCCeECCcEEEEEEcCCC
Confidence 9999999999999 9999999999999998655
No 358
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.27 E-value=1e-11 Score=86.14 Aligned_cols=78 Identities=18% Similarity=0.239 Sum_probs=63.4
Q ss_pred cceeEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEE
Q psy14193 22 SKLKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYV 101 (239)
Q Consensus 22 ~~~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV 101 (239)
.-++|||+++......+ +|+++|++||+|.+|. .+..+++ ||||
T Consensus 7 ~~~~l~V~nl~~~~t~~--------------~l~~~F~~~G~v~~v~-------------------~~~~~g~---~afV 50 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSA--------------QLSEYFLAFGPVASVV-------------------MDKDKGV---FAIV 50 (94)
T ss_dssp TCCEEEEECCCTTCCHH--------------HHHHHGGGTSCEEEEE-------------------ECSSSCC---EEEE
T ss_pred CCCEEEEECCCCCCCHH--------------HHHHHHHhcCCeEEEE-------------------EcCCCCc---EEEE
Confidence 34689998876554444 9999999999999863 1333444 9999
Q ss_pred EeCCHHHHHHHHHhCCCccCCeeEEEeccCCCCC
Q psy14193 102 RFKNLESVEKALEMNGHVIDEHTIRVDKALTTTK 135 (239)
Q Consensus 102 ~f~~~e~a~~Ai~~~~~~l~g~~i~v~~~~~~~~ 135 (239)
+|.+.++|++|+++|+..+.|+.|.|.++.++..
T Consensus 51 ~f~~~~~a~~ai~l~g~~~~g~~l~V~~a~~~~~ 84 (94)
T 2e5g_A 51 EMGDVGAREAVLSQSQHSLGGHRLRVRPREQKEF 84 (94)
T ss_dssp EESSHHHHHHHHTCSCCEETTEECCCBCSCCSCC
T ss_pred EECCHHHHHHHHhcCCeEECCEEEEEEECCcCCC
Confidence 9999999999999999999999999998876654
No 359
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.26 E-value=1e-11 Score=90.55 Aligned_cols=73 Identities=22% Similarity=0.285 Sum_probs=59.5
Q ss_pred eEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcce-EEEEe
Q psy14193 25 KVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMN-AYVRF 103 (239)
Q Consensus 25 ~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~-afV~f 103 (239)
.|||+++...... ++|+++|++||+|.+|++. . + .|| |||+|
T Consensus 27 ~l~V~NL~~~vt~--------------~~L~~~Fs~yG~V~~v~i~-----------------~-----~-~Gf~aFVef 69 (124)
T 2e5i_A 27 LLSIQNPLYPITV--------------DVLYTVCNPVGKVQRIVIF-----------------K-----R-NGIQAMVEF 69 (124)
T ss_dssp EEEEESCCSCCCH--------------HHHHHHHTTTSCEEEEEEE-----------------E-----S-SSEEEEEEE
T ss_pred EEEEcCcCCCCCH--------------HHHHHHHHhcCCEEEEEEE-----------------e-----C-CCCEEEEEE
Confidence 5677776555444 4999999999999999841 1 1 286 99999
Q ss_pred CCHHHHHHHHH-hCCCccCC--eeEEEeccCCCC
Q psy14193 104 KNLESVEKALE-MNGHVIDE--HTIRVDKALTTT 134 (239)
Q Consensus 104 ~~~e~a~~Ai~-~~~~~l~g--~~i~v~~~~~~~ 134 (239)
.+.++|..|++ |||..|.| +.|+|.++.+..
T Consensus 70 ~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~~~ 103 (124)
T 2e5i_A 70 ESVLCAQKAKAALNGADIYAGCCTLKIEYARPTR 103 (124)
T ss_dssp SSHHHHHHHHHHHTTCCCBTTBSEEEEECCSCSC
T ss_pred CCHHHHHHHHHHhCCCEecCCCeEEEEEEecCCc
Confidence 99999999999 99999987 689999998764
No 360
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.26 E-value=1.2e-11 Score=86.79 Aligned_cols=63 Identities=16% Similarity=0.288 Sum_probs=53.2
Q ss_pred hhHHHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEEEeCCHHHHHHHHH-hCCCccCCeeEEE
Q psy14193 49 HALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALE-MNGHVIDEHTIRV 127 (239)
Q Consensus 49 ~r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV~f~~~e~a~~Ai~-~~~~~l~g~~i~v 127 (239)
.+.++|+++|++||+|.+|.+. ++++|||||+|.+.++|+.|++ +++ +.+++|.|
T Consensus 29 ~te~~L~~~F~~~G~V~~v~i~----------------------~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V 84 (100)
T 2d9o_A 29 YSKDVLLRLLQKYGEVLNLVLS----------------------SKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKI 84 (100)
T ss_dssp CCHHHHHHHHHTTSCEEEEEEE----------------------SSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEE
T ss_pred CCHHHHHHHHHhcCCEEEEEEc----------------------cCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEE
Confidence 3447999999999999999851 2567999999999999999999 554 67999999
Q ss_pred eccCCCCC
Q psy14193 128 DKALTTTK 135 (239)
Q Consensus 128 ~~~~~~~~ 135 (239)
.++.+...
T Consensus 85 ~~a~~~~~ 92 (100)
T 2d9o_A 85 SWLEGQPQ 92 (100)
T ss_dssp ECSSCCCC
T ss_pred EEccCCCC
Confidence 99987654
No 361
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.26 E-value=7.2e-12 Score=87.12 Aligned_cols=79 Identities=19% Similarity=0.274 Sum_probs=63.5
Q ss_pred cceeEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEE
Q psy14193 22 SKLKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYV 101 (239)
Q Consensus 22 ~~~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV 101 (239)
..+.|||+++...... ++|+++|++||+|.+|+. + +.+.. .|.|||
T Consensus 14 ~~~~l~V~nlp~~~t~--------------~~l~~~F~~~G~v~~~~~--i--------------~~~~~----~~~afV 59 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQW--------------EVLDSLLVQYGVVESCEQ--V--------------NTDSE----TAVVNV 59 (96)
T ss_dssp SCCCEEEEEECSSSCH--------------HHHHHHHHHHSCEEEEEE--E--------------CCSSS----SEEEEE
T ss_pred CCCEEEEEcCCCCCCH--------------HHHHHHHHhcCCeEEEEE--e--------------ecCCC----CCEEEE
Confidence 4578999877655444 499999999999999841 1 22222 244999
Q ss_pred EeCCHHHHHHHHH-hCCCccCCeeEEEeccCCCC
Q psy14193 102 RFKNLESVEKALE-MNGHVIDEHTIRVDKALTTT 134 (239)
Q Consensus 102 ~f~~~e~a~~Ai~-~~~~~l~g~~i~v~~~~~~~ 134 (239)
+|.+.++|++|++ +|+..+.|++|.|.++.++.
T Consensus 60 ~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~ 93 (96)
T 2e44_A 60 TYSSKDQARQALDKLNGFQLENFTLKVAYIPDEM 93 (96)
T ss_dssp EESSHHHHHHHHHHHTTCBCSSCBCEEEECCCCC
T ss_pred EECCHHHHHHHHHHhCCCEECCcEEEEEEcCccc
Confidence 9999999999999 99999999999999998774
No 362
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.25 E-value=6.8e-12 Score=90.45 Aligned_cols=75 Identities=16% Similarity=0.179 Sum_probs=58.8
Q ss_pred cceeEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEE
Q psy14193 22 SKLKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYV 101 (239)
Q Consensus 22 ~~~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV 101 (239)
.+.+|||+++......+ +|+++|++||+|.+|.+ +.+ |||||
T Consensus 15 ~~~~l~V~nLp~~~t~~--------------~l~~~F~~~G~v~~~~i-----------------~~~-------g~afV 56 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQ--------------DLKDHMREAGDVCYADV-----------------YRD-------GTGVV 56 (115)
T ss_dssp --CCEEEEECCSSCCTT--------------HHHHHHGGGSCEEEEEE-----------------CTT-------SEEEE
T ss_pred CCcEEEEeCCCCCCCHH--------------HHHHHHHhcCCeEEEEE-----------------ecC-------CEEEE
Confidence 45788998876554444 99999999999999984 111 89999
Q ss_pred EeCCHHHHHHHHH-hCCCccCCee-----EEEeccCCCC
Q psy14193 102 RFKNLESVEKALE-MNGHVIDEHT-----IRVDKALTTT 134 (239)
Q Consensus 102 ~f~~~e~a~~Ai~-~~~~~l~g~~-----i~v~~~~~~~ 134 (239)
+|.+.++|++|++ ||+..+.|+. |.|..+.+..
T Consensus 57 ~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~~~~~~~ 95 (115)
T 3beg_B 57 EFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDGPRS 95 (115)
T ss_dssp EESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEEECC---
T ss_pred EECCHHHHHHHHHHhCCCEECCcEeeeEEEEeccCCCCC
Confidence 9999999999999 9999999988 6776665443
No 363
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.25 E-value=9.9e-12 Score=97.80 Aligned_cols=64 Identities=19% Similarity=0.280 Sum_probs=53.9
Q ss_pred HHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEEEeCCHHHHHHHHHhCCCccCCeeEEEeccC
Q psy14193 52 SSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKAL 131 (239)
Q Consensus 52 ~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV~f~~~e~a~~Ai~~~~~~l~g~~i~v~~~~ 131 (239)
++|+++|++||+|.+|+++ ++. ++.++|||||+|.+.++|++|++..+..+.|++|.|.+..
T Consensus 124 ~~L~~~F~~~G~v~~v~i~-----------------~~~-~~~~kG~aFVeF~~~e~A~~A~~~~~~~~~Gr~l~V~~~~ 185 (193)
T 2voo_A 124 DDIKEWLEDKGQVLNIQMR-----------------RTL-HKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKD 185 (193)
T ss_dssp HHHHHHHTTSCCEEEEEEE-----------------ECT-TCCEEEEEEEEESSHHHHHHHHHCTTCEETTEECEEEETT
T ss_pred HHHHHHHhcCCCEEEEEEE-----------------ECC-CCCcccEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEhH
Confidence 7999999999999999852 222 3667899999999999999999944568999999999876
Q ss_pred CC
Q psy14193 132 TT 133 (239)
Q Consensus 132 ~~ 133 (239)
.-
T Consensus 186 ~y 187 (193)
T 2voo_A 186 DY 187 (193)
T ss_dssp TC
T ss_pred HH
Confidence 43
No 364
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.25 E-value=1.6e-11 Score=84.40 Aligned_cols=75 Identities=21% Similarity=0.320 Sum_probs=56.4
Q ss_pred cceeEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEE
Q psy14193 22 SKLKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYV 101 (239)
Q Consensus 22 ~~~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV 101 (239)
....|||+.+......+ +|+++|++||+|.+|++ +. .++|||||
T Consensus 10 ~~~~l~V~~Lp~~~te~--------------~L~~~F~~~G~i~~v~i---~~-------------------~srGfaFV 53 (89)
T 3d2w_A 10 HGSKVFVGRCTEDMTAE--------------ELQQFFCQYGEVVDVFI---PK-------------------PFRAFAFV 53 (89)
T ss_dssp -CCEEEEESCCTTCCHH--------------HHHHHHTTTSCEEEEEC---CS-------------------SCCSEEEE
T ss_pred CCCEEEEeCCCCCCCHH--------------HHHHHHhccCCEEEEEE---ee-------------------CCCCEEEE
Confidence 46788888877665554 99999999999999984 21 26799999
Q ss_pred EeCCHHHHHHHHHhCCCc--cCCeeEEEeccCCCCC
Q psy14193 102 RFKNLESVEKALEMNGHV--IDEHTIRVDKALTTTK 135 (239)
Q Consensus 102 ~f~~~e~a~~Ai~~~~~~--l~g~~i~v~~~~~~~~ 135 (239)
+|.+.++|++ +++.. +.|+.|.|.++.++..
T Consensus 54 ~F~~~~~A~~---~~~~~~~~~g~~v~v~~a~~k~~ 86 (89)
T 3d2w_A 54 TFADDKVAQS---LCGEDLIIKGISVHISNAEPKHN 86 (89)
T ss_dssp EESCHHHHHH---HTTCEEEETTEEEEEEECC----
T ss_pred EECCHHHHHH---HcCCCcccCCEEEEEEEcCCCCc
Confidence 9999999984 44444 4699999999987653
No 365
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.24 E-value=1.2e-11 Score=84.31 Aligned_cols=71 Identities=13% Similarity=0.418 Sum_probs=60.1
Q ss_pred cceeEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccC----C-------ceeEEEEeecccccCCCccceeeecccc
Q psy14193 22 SKLKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPY----G-------EVETVRFRSVPVADITLPRKACIKMNKV 90 (239)
Q Consensus 22 ~~~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~----G-------~I~~v~l~~~~~~~~~~~~~~~~~~~~~ 90 (239)
..+.|||+++......+ +|+++|++| | +|.++++
T Consensus 5 ~~~~l~V~nLp~~~t~~--------------~l~~~F~~~~~~~g~~~~~~~~v~~~~~--------------------- 49 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEE--------------AMMDFFNAQMRLGGLTQAPGNPVLAVQI--------------------- 49 (87)
T ss_dssp GGGEEEEESCCTTCCHH--------------HHHHHHHHHHHHTTCCSSSSCSEEEEEE---------------------
T ss_pred CCCEEEEeCCCCCCCHH--------------HHHHHHHHHhhhcccccCCCCcceEEEe---------------------
Confidence 46788998876654443 999999999 8 8999884
Q ss_pred cCCCCcceEEEEeCCHHHHHHHHHhCCCccCCeeEEEec
Q psy14193 91 HEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDK 129 (239)
Q Consensus 91 ~t~~~~G~afV~f~~~e~a~~Ai~~~~~~l~g~~i~v~~ 129 (239)
.+++|||||+|.+.++|++|+.+|+..+.|+.|.|.+
T Consensus 50 --~~~kg~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~r 86 (87)
T 2hzc_A 50 --NQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRR 86 (87)
T ss_dssp --CSSSSEEEEEESSHHHHHHHGGGTTCEETTEECEEEC
T ss_pred --cCCCcEEEEEcCCHHHHHHHHhcCCCEECCeEEEEeC
Confidence 1236999999999999999999999999999999975
No 366
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.24 E-value=1.5e-11 Score=88.47 Aligned_cols=60 Identities=15% Similarity=0.172 Sum_probs=52.6
Q ss_pred HHHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEEEeCCHHHHHHHHH-hCCCccCCeeEEEec
Q psy14193 51 LSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALE-MNGHVIDEHTIRVDK 129 (239)
Q Consensus 51 ~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV~f~~~e~a~~Ai~-~~~~~l~g~~i~v~~ 129 (239)
.+||++.|++||.|.+|.+ +.+ .++|+|||+|.+.++|.+|++ |||..++|+.|.|.+
T Consensus 31 ~edl~~~f~kfG~V~~v~i---~~~------------------~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~i~v~~ 89 (114)
T 3s6e_A 31 KDDVIEECNKHGGVIHIYV---DKN------------------SAQGNVYVKCPSIAAAIAAVNALHGRWFAGKMITAAY 89 (114)
T ss_dssp HHHHHHHHTTTTCCSEEEE---CTT------------------CTTCCEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred HHHHHHHHhccCCEEEEEE---ecC------------------CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3899999999999999984 211 147999999999999999999 999999999999988
Q ss_pred cC
Q psy14193 130 AL 131 (239)
Q Consensus 130 ~~ 131 (239)
+.
T Consensus 90 ~~ 91 (114)
T 3s6e_A 90 VP 91 (114)
T ss_dssp EC
T ss_pred Ec
Confidence 64
No 367
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.23 E-value=1.5e-11 Score=104.59 Aligned_cols=63 Identities=19% Similarity=0.378 Sum_probs=57.2
Q ss_pred CCcEEEEcC--CCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEe
Q psy14193 137 NSHSIFIGN--IPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEID 205 (239)
Q Consensus 137 ~~~~l~V~n--Lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~ 205 (239)
++.+|||+| |+..+|+++|+++|++||+|.++.+.. +||||||+|.+.++|.+|+..|||..+
T Consensus 17 ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~ 81 (345)
T 3tht_A 17 ATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEV 81 (345)
T ss_dssp CCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEE
T ss_pred CCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCcc
Confidence 467999999 578999999999999999999987753 479999999999999999999999988
No 368
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.22 E-value=1.8e-11 Score=99.00 Aligned_cols=85 Identities=19% Similarity=0.278 Sum_probs=64.0
Q ss_pred cceeEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEE
Q psy14193 22 SKLKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYV 101 (239)
Q Consensus 22 ~~~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV 101 (239)
..+.|||+.+....... ........++|+++|++||+|.+|++. .++|||||
T Consensus 133 ~~rtLfVgnL~~~~~~~-----~~~~~~tEe~L~~~F~~fG~I~~v~v~-----------------------~~kG~AFV 184 (240)
T 3u1l_A 133 KNKTLYVGGIDGALNSK-----HLKPAQIESRIRFVFSRLGDIDRIRYV-----------------------ESKNCGFV 184 (240)
T ss_dssp CCCEEEEECTTGGGTTC-----CCCHHHHHHHHHHHHHTTSCEEEEEEE-----------------------GGGTEEEE
T ss_pred CCceeecCCCChhhhcc-----cccccCcHHHHHHHHHccCCEEEEEEE-----------------------CCCCEEEE
Confidence 45789998776543100 001112346999999999999999851 13699999
Q ss_pred EeCCHHHHHHHHH-hCCCcc------------CCeeEEEeccCCCC
Q psy14193 102 RFKNLESVEKALE-MNGHVI------------DEHTIRVDKALTTT 134 (239)
Q Consensus 102 ~f~~~e~a~~Ai~-~~~~~l------------~g~~i~v~~~~~~~ 134 (239)
+|.+.++|+.|++ |++..+ .|+.|.|.|+...+
T Consensus 185 ~F~~~~~Ae~A~~am~g~~l~~~~~~e~~~~~~gr~L~V~wA~~~p 230 (240)
T 3u1l_A 185 KFKYQANAEFAKEAMSNQTLLLPSDKEWDDRREGTGLLVKWANEDP 230 (240)
T ss_dssp EESSHHHHHHHHHHHTTCCCCCTTSTTGGGGGGSCCCEEEECC---
T ss_pred EeCCHHHHHHHHHHhCCCEEeccccccccccCCCCEEEEEEccCCC
Confidence 9999999999999 999999 89999999998664
No 369
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.20 E-value=2.5e-11 Score=85.19 Aligned_cols=79 Identities=11% Similarity=0.075 Sum_probs=61.5
Q ss_pred CeeEEEeccCCCCCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhC
Q psy14193 122 EHTIRVDKALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESC 201 (239)
Q Consensus 122 g~~i~v~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~ 201 (239)
...|.|.|...... .-+..+++++|+++|++||+|.++.++ +.++|||||+|.+.++|..|+..++
T Consensus 10 ~~~~~v~w~~~~~~---------~~~~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~ 75 (100)
T 2d9o_A 10 TPKLKLKWKCKKED---------ESKGGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEV 75 (100)
T ss_dssp SCEEEEECCCCSSC---------SCCCSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCC
T ss_pred cceEEEeeeccCcc---------CcCCCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcC
Confidence 45666776543321 113578999999999999999999987 3579999999999999999998865
Q ss_pred CcEeeEEEEeeCCCC
Q psy14193 202 GEIDNVRLIRDQHTN 216 (239)
Q Consensus 202 g~~~~~r~l~~~~~~ 216 (239)
| +.++.|+|.++.
T Consensus 76 ~--~~g~~l~V~~a~ 88 (100)
T 2d9o_A 76 G--LVDNPLKISWLE 88 (100)
T ss_dssp B--CSSSBCEEECSS
T ss_pred C--CCCCeEEEEEcc
Confidence 5 467788887653
No 370
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.20 E-value=6.5e-11 Score=85.06 Aligned_cols=74 Identities=9% Similarity=0.125 Sum_probs=62.6
Q ss_pred CCcEEEEcCCCCCC----------cHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEee
Q psy14193 137 NSHSIFIGNIPFEA----------EEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDN 206 (239)
Q Consensus 137 ~~~~l~V~nLp~~~----------t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~ 206 (239)
++++|.+.|+=... .+++|++.|++||.|.++.+.++. ++|++||+|.+.++|.+|+..|||..++
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f~ 81 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWFA 81 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 35688888874321 147889999999999999987653 5899999999999999999999999999
Q ss_pred EEEEeeCC
Q psy14193 207 VRLIRDQH 214 (239)
Q Consensus 207 ~r~l~~~~ 214 (239)
||.|++..
T Consensus 82 GR~i~v~~ 89 (114)
T 3s6e_A 82 GKMITAAY 89 (114)
T ss_dssp TEECEEEE
T ss_pred CEEEEEEE
Confidence 99999864
No 371
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.17 E-value=2.3e-11 Score=83.17 Aligned_cols=78 Identities=18% Similarity=0.256 Sum_probs=60.2
Q ss_pred cceeEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEE
Q psy14193 22 SKLKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYV 101 (239)
Q Consensus 22 ~~~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV 101 (239)
..++|||+++......+ +|+++|++||+|.+|++ +. .++|||||
T Consensus 4 ~~~~l~V~nLp~~~te~--------------~l~~~F~~~G~i~~v~i---~~-------------------~~~g~afV 47 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTED--------------ELREFFSQYGDVMDVFI---PK-------------------PFRAFAFV 47 (88)
T ss_dssp CCCEEEEESCCSSSCHH--------------HHHHHSTTTSCCCEEEC---CS-------------------SCCSCCEE
T ss_pred CCcEEEEeCCCCCCCHH--------------HHHHHHHHcCCeeEEEE---ec-------------------CCCCEEEE
Confidence 45789998876654444 99999999999999984 21 15799999
Q ss_pred EeCCHHHHHHHHHhCCCccCCeeEEEeccCCCCCC
Q psy14193 102 RFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKS 136 (239)
Q Consensus 102 ~f~~~e~a~~Ai~~~~~~l~g~~i~v~~~~~~~~~ 136 (239)
+|.+.++|++|+.. ...+.|+.|.|.++.++...
T Consensus 48 ~f~~~~~a~~~~~~-~~~~~g~~l~v~~a~~~~~~ 81 (88)
T 1wf0_A 48 TFADDQIAQSLCGE-DLIIKGISVHISNAEPKHNS 81 (88)
T ss_dssp ECSCHHHHHHTTTC-EEEETTEEEEEECCCCCCCC
T ss_pred EECCHHHHHHHhcC-CceeCCEEEEEEecCCCCCC
Confidence 99999999865332 34558999999999877543
No 372
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.97 E-value=5.5e-10 Score=80.59 Aligned_cols=69 Identities=20% Similarity=0.201 Sum_probs=57.3
Q ss_pred CCcEEEEcCCCCC-CcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecC-hHHHHHHHHHhC--CcEeeEEEEe
Q psy14193 137 NSHSIFIGNIPFE-AEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKA-EEEELRKAFESC--GEIDNVRLIR 211 (239)
Q Consensus 137 ~~~~l~V~nLp~~-~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~-~e~a~~a~~~~~--g~~~~~r~l~ 211 (239)
..+.|||+||+++ +++++|+++|++||+|.+|.+.++.. .|||+|.+ +++|..|+..++ |..+.+..++
T Consensus 17 ~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~ 89 (121)
T 1owx_A 17 IGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNKEVT 89 (121)
T ss_dssp CCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEE
T ss_pred CCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCcEEE
Confidence 4789999999999 99999999999999999999988753 49999999 778999999873 4444443333
No 373
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=98.93 E-value=1.8e-09 Score=91.76 Aligned_cols=73 Identities=12% Similarity=0.248 Sum_probs=57.0
Q ss_pred cceeEEeehh--hHhhhhhcCCCcchhhchhHHHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceE
Q psy14193 22 SKLKVFLNIW--KMALKLKMNPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNA 99 (239)
Q Consensus 22 ~~~~v~v~~~--~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~a 99 (239)
-.+.+||++. ......+ +|+++|++||+|.+|.+ + .++|||
T Consensus 17 ps~~l~VgN~gl~~~~te~--------------~L~~~F~~~G~V~~v~~---~--------------------~~kgfa 59 (345)
T 3tht_A 17 ATQSLVVANGGLGNGVSRN--------------QLLPVLEKCGLVDALLM---P--------------------PNKPYS 59 (345)
T ss_dssp CCSEEEEETCSGGGTCCHH--------------HHHHHHHTTSCEEEEEC---C--------------------TTCSEE
T ss_pred CCCEEEEEcCCCCCCCCHH--------------HHHHHHHhcCCeEEEEE---e--------------------CCCCEE
Confidence 3578999873 3343333 99999999999999873 1 146999
Q ss_pred EEEeCCHHHHHHHHH-hCCCccC---Ce--eEEEeccC
Q psy14193 100 YVRFKNLESVEKALE-MNGHVID---EH--TIRVDKAL 131 (239)
Q Consensus 100 fV~f~~~e~a~~Ai~-~~~~~l~---g~--~i~v~~~~ 131 (239)
||+|.+.++|++|++ |||..+. |+ .+++.++.
T Consensus 60 FV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ly~~~~~ 97 (345)
T 3tht_A 60 FARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNFVE 97 (345)
T ss_dssp EEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEEECS
T ss_pred EEEECCHHHHHHHHHHhCCCccccccCCceEEEEEEee
Confidence 999999999999999 9999882 44 67777664
No 374
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.91 E-value=2.4e-09 Score=72.66 Aligned_cols=57 Identities=25% Similarity=0.364 Sum_probs=51.1
Q ss_pred HHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEEEeCCHHHHHHHHHhCCCccCCeeEEEeccC
Q psy14193 52 SSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKAL 131 (239)
Q Consensus 52 ~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV~f~~~e~a~~Ai~~~~~~l~g~~i~v~~~~ 131 (239)
.+|.+.|++||+|.++++ .. +.+||+|.+.++|.+|++|||..+.|+.|+|..+.
T Consensus 30 ~~L~~~F~~~G~Vi~vr~---~~----------------------d~~fVtF~d~~sAlaAi~mnG~~v~Gr~LkV~lkt 84 (91)
T 2dnr_A 30 DELLQQFASFGEVILIRF---VE----------------------DKMWVTFLEGSSALNVLSLNGKELLNRTITIALKS 84 (91)
T ss_dssp HHHHHHHHTTCCEEEEEE---CS----------------------SSEEEEESSHHHHHHGGGGTTCEETTEEEEEEECC
T ss_pred HHHHHHHHhCCCeEEEEE---ec----------------------CCEEEEECChHHHHHHHhcCCeEeCCeEEEEEeCC
Confidence 689999999999999995 22 24999999999999999999999999999999887
Q ss_pred CC
Q psy14193 132 TT 133 (239)
Q Consensus 132 ~~ 133 (239)
+.
T Consensus 85 ~d 86 (91)
T 2dnr_A 85 PS 86 (91)
T ss_dssp CS
T ss_pred CC
Confidence 64
No 375
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.87 E-value=3.7e-09 Score=84.59 Aligned_cols=67 Identities=16% Similarity=0.229 Sum_probs=56.5
Q ss_pred HHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEEEeCCHHHHHHHHH-hCCCccCCeeEEEecc
Q psy14193 52 SSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALE-MNGHVIDEHTIRVDKA 130 (239)
Q Consensus 52 ~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV~f~~~e~a~~Ai~-~~~~~l~g~~i~v~~~ 130 (239)
++|++.|++||+|.++.+ +.+.. .+..+++++|++||+|.+.++|.+|++ |||..+.|++|.+.+.
T Consensus 144 ~dl~~e~~~~G~v~~~~v---~~~~~----------~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~ 210 (222)
T 3dxb_A 144 GEVTEECGKFGAVNRVII---YQEKQ----------GEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVY 210 (222)
T ss_dssp HHHHHHHTTTSCEEEEEE---EEEEC----------CSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEEC
T ss_pred HHHHHHHHccCCeEEEEE---ecCCC----------CcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEc
Confidence 899999999999999984 22211 123456889999999999999999999 9999999999999876
Q ss_pred C
Q psy14193 131 L 131 (239)
Q Consensus 131 ~ 131 (239)
.
T Consensus 211 ~ 211 (222)
T 3dxb_A 211 D 211 (222)
T ss_dssp C
T ss_pred C
Confidence 4
No 376
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.87 E-value=5.2e-09 Score=71.04 Aligned_cols=71 Identities=20% Similarity=0.199 Sum_probs=58.8
Q ss_pred CcEEEEcCCC----CCCcH----HHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEE
Q psy14193 138 SHSIFIGNIP----FEAEE----EELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRL 209 (239)
Q Consensus 138 ~~~l~V~nLp----~~~t~----~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~ 209 (239)
..||+|...| .++.. .+|.+.|++||+|..+++..+. +||+|.+.++|..|+. |||..+.||.
T Consensus 7 d~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v~Gr~ 77 (91)
T 2dnr_A 7 GGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKELLNRT 77 (91)
T ss_dssp SCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEETTEE
T ss_pred CCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEeCCeE
Confidence 5688887766 23434 7789999999999999998873 8999999997877776 9999999999
Q ss_pred EeeCCCCC
Q psy14193 210 IRDQHTNI 217 (239)
Q Consensus 210 l~~~~~~~ 217 (239)
|+|+.+..
T Consensus 78 LkV~lkt~ 85 (91)
T 2dnr_A 78 ITIALKSP 85 (91)
T ss_dssp EEEEECCC
T ss_pred EEEEeCCC
Confidence 99986644
No 377
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.85 E-value=1.3e-08 Score=81.48 Aligned_cols=103 Identities=12% Similarity=0.108 Sum_probs=75.4
Q ss_pred EEeCCHHHHHHHHH--hCCCccCCeeEEEeccCCCCCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCC---
Q psy14193 101 VRFKNLESVEKALE--MNGHVIDEHTIRVDKALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQH--- 175 (239)
Q Consensus 101 V~f~~~e~a~~Ai~--~~~~~l~g~~i~v~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--- 175 (239)
+-+.+.++....++ +.+.......+.+....... ...+-.+++|++.|++||.|.++.++++..
T Consensus 101 ~G~~~~~~l~~~l~~~l~~~~~~s~v~~l~n~v~~~-----------e~~~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~ 169 (222)
T 3dxb_A 101 VGALSKGQLKEFLDANLAGSAMESTVMVLRNMVDPK-----------DIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEE 169 (222)
T ss_dssp ESCCCHHHHHHHHHHHSCCSCCBCSEEEEESSCCGG-----------GCCTTHHHHHHHHHTTTSCEEEEEEEEEECCSS
T ss_pred ccccChHHHHHHHHhhccccccccccchhhcCCCHH-----------HHHHHHHHHHHHHHHccCCeEEEEEecCCCCcc
Confidence 33456777777777 44433334434333222221 122346789999999999999999986543
Q ss_pred -CCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeCC
Q psy14193 176 -TNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQH 214 (239)
Q Consensus 176 -tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~~ 214 (239)
++.++|++||+|.+.++|.+|+..|||..++||.|++..
T Consensus 170 ~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~ 209 (222)
T 3dxb_A 170 EDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEV 209 (222)
T ss_dssp TTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred cCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEE
Confidence 458999999999999999999999999999999998853
No 378
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.71 E-value=2.8e-08 Score=67.76 Aligned_cols=70 Identities=19% Similarity=0.103 Sum_probs=59.6
Q ss_pred CCcEEEEcCCCCC-----CcH----HHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeE
Q psy14193 137 NSHSIFIGNIPFE-----AEE----EELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNV 207 (239)
Q Consensus 137 ~~~~l~V~nLp~~-----~t~----~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~ 207 (239)
+..||+|..++.+ +.. .+|.+.|.+||+|..+++..++ +||+|.+.++|..|+. |+|..+++
T Consensus 14 pD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~v~G 84 (95)
T 1ufw_A 14 LDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMKVKG 84 (95)
T ss_dssp TTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSEETT
T ss_pred CCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCeeeCC
Confidence 4679999888743 333 6688999999999999999873 9999999998988887 99999999
Q ss_pred EEEeeCCC
Q psy14193 208 RLIRDQHT 215 (239)
Q Consensus 208 r~l~~~~~ 215 (239)
|.|+|+..
T Consensus 85 r~L~V~~k 92 (95)
T 1ufw_A 85 RAVKISGP 92 (95)
T ss_dssp EEEEEECC
T ss_pred eEEEEecc
Confidence 99999754
No 379
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.62 E-value=3.5e-08 Score=67.33 Aligned_cols=56 Identities=16% Similarity=0.366 Sum_probs=49.2
Q ss_pred HHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEEEeCCHHHHHHHHHhCCCccCCeeEEEeccC
Q psy14193 52 SSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKAL 131 (239)
Q Consensus 52 ~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV~f~~~e~a~~Ai~~~~~~l~g~~i~v~~~~ 131 (239)
.+|.+.|++||+|..+++ ..+ -+||+|.+.++|.+|++|+|..+.|+.|+|....
T Consensus 39 ~~L~~~F~~~G~Vilvr~---v~d----------------------~~fVtF~d~~sAl~AI~ldG~~v~Gr~L~V~~k~ 93 (95)
T 1ufw_A 39 TELMQTLGSYGTIVLVRI---NQG----------------------QMLVTFADSHSALSVLDVDGMKVKGRAVKISGPS 93 (95)
T ss_dssp HHHHHHHHHHSCCSEEEE---ETT----------------------EEEEECSCSHHHHHHHHGGGSEETTEEEEEECCC
T ss_pred HHHHHHHHHCCCEEEEEE---ecC----------------------cEEEEEcChHHHHHHHhcCCeeeCCeEEEEeccC
Confidence 689999999999999994 222 3999999999999999999999999999998754
Q ss_pred C
Q psy14193 132 T 132 (239)
Q Consensus 132 ~ 132 (239)
+
T Consensus 94 ~ 94 (95)
T 1ufw_A 94 S 94 (95)
T ss_dssp C
T ss_pred C
Confidence 3
No 380
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.57 E-value=2.7e-07 Score=64.25 Aligned_cols=71 Identities=11% Similarity=0.073 Sum_probs=65.0
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcC-----CCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEe
Q psy14193 137 NSHSIFIGNIPFEAEEEELRKAFESC-----GEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIR 211 (239)
Q Consensus 137 ~~~~l~V~nLp~~~t~~~l~~~F~~~-----G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~ 211 (239)
..++|-+-|||..+++..|+.+.+++ |.+..+.+..|. |-|+|+|.+...|.+|.+.++|..+.||.|+
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH------~GAivef~d~~~AgKasLaL~G~ef~gr~Lr 93 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF------NGAIIIFRDSKFAAKMLMILNGSQFQGKVIR 93 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT------TEEEEECSCHHHHHHHHHHHSSEEETTEEEE
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC------CceEEEEccchhhHHHHhhcCCeeecCeEEE
Confidence 36788999999999999999999999 999999998873 3589999999999999999999999999999
Q ss_pred eC
Q psy14193 212 DQ 213 (239)
Q Consensus 212 ~~ 213 (239)
+-
T Consensus 94 ~g 95 (117)
T 2l9w_A 94 SG 95 (117)
T ss_dssp EE
T ss_pred ec
Confidence 83
No 381
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.31 E-value=1.9e-06 Score=62.01 Aligned_cols=75 Identities=9% Similarity=0.019 Sum_probs=57.7
Q ss_pred cccceeEEeehhhHh-hhhhcCCCcchhhchhHHHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcce
Q psy14193 20 LMSKLKVFLNIWKMA-LKLKMNPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMN 98 (239)
Q Consensus 20 ~~~~~~v~v~~~~~~-~~~~~~~~~~~~k~~r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~ 98 (239)
+..|.-|+|+..... ..++ +|+++|++||+|..|.+ ..+ . -.
T Consensus 15 ~~~G~il~v~~l~~~~~sre--------------dLke~F~~~G~V~~Vd~---~~g--------------~------~t 57 (121)
T 1owx_A 15 EKIGCLLKFSGDLDDQTCRE--------------DLHILFSNHGEIKWIDF---VRG--------------A------KE 57 (121)
T ss_dssp CCCCCEEEEEESCCSSCCHH--------------HHHHHTCSSCCEEEEEC---CTT--------------C------SE
T ss_pred ccCCeEEEEecCCCCcCCHH--------------HHHHHHHhcCCEEEEEE---ecC--------------C------CE
Confidence 457888888876555 4444 99999999999999984 222 1 15
Q ss_pred EEEEeCC-HHHHHHHHH-hC--CCccCCeeEEEeccC
Q psy14193 99 AYVRFKN-LESVEKALE-MN--GHVIDEHTIRVDKAL 131 (239)
Q Consensus 99 afV~f~~-~e~a~~Ai~-~~--~~~l~g~~i~v~~~~ 131 (239)
|||.|.+ +++|..|+. +| +..|.|..+.+....
T Consensus 58 gfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~evL~ 94 (121)
T 1owx_A 58 GIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEVLE 94 (121)
T ss_dssp EEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEECC
T ss_pred EEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEEECC
Confidence 9999999 789999999 74 778888888776543
No 382
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.79 E-value=0.00029 Score=47.84 Aligned_cols=82 Identities=17% Similarity=0.178 Sum_probs=62.5
Q ss_pred cEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCC--CceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeCCCC
Q psy14193 139 HSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNI--GKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTN 216 (239)
Q Consensus 139 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~--~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~~~~ 216 (239)
.+|.|++||+.+|++++.+.+++...+....+.....+.. .-.-|||.|.+.++...-....+|..+... .|
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~------kg 75 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDN------KG 75 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECT------TC
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcC------CC
Confidence 4789999999999999999999998887777765543332 235699999999988888888999987631 12
Q ss_pred CCcceEEEEeC
Q psy14193 217 IGKGFGYVNFK 227 (239)
Q Consensus 217 ~~~G~~fv~f~ 227 (239)
..+-|-|+|.
T Consensus 76 -~~~~a~VE~A 85 (91)
T 1uw4_A 76 -QEYPAIVEFA 85 (91)
T ss_dssp -CEEECEEEEC
T ss_pred -CEeeeEEEEc
Confidence 3456677764
No 383
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.26 E-value=0.00064 Score=47.01 Aligned_cols=72 Identities=7% Similarity=-0.008 Sum_probs=59.3
Q ss_pred CcEEEEcCCCCCC-c----HHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEee
Q psy14193 138 SHSIFIGNIPFEA-E----EEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRD 212 (239)
Q Consensus 138 ~~~l~V~nLp~~~-t----~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~ 212 (239)
.++|++.||+.++ + .+.++++|..|+++......+.- + =..|.|.++++|.+|-..++|..+.|+.+++
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF-----R-Rirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~ 78 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF-----K-RVRINFSNPLSAADARLRLHKTEFLGKEMKL 78 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT-----T-EEEEECSSTTHHHHHHHTSTTSEETTEECEE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc-----e-EEEEEeCChHHHHHHHHHhccceecCceeEE
Confidence 4689999998765 2 36789999999998887766542 1 3689999999999999999999999999998
Q ss_pred CCC
Q psy14193 213 QHT 215 (239)
Q Consensus 213 ~~~ 215 (239)
-.+
T Consensus 79 YFg 81 (104)
T 1wey_A 79 YFA 81 (104)
T ss_dssp ECC
T ss_pred Eec
Confidence 654
No 384
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.20 E-value=0.0014 Score=44.57 Aligned_cols=63 Identities=21% Similarity=0.324 Sum_probs=47.8
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhC-CcEeeEEE
Q psy14193 138 SHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESC-GEIDNVRL 209 (239)
Q Consensus 138 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~-g~~~~~r~ 209 (239)
...+++ +.|+++...||.++|++||.|. |+++-|- -|||.|.+++.|..|+..+. ...+..+.
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~fggv~-I~WidDT-------sAlvvf~~~~~a~~al~~i~k~~~y~i~t 79 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAFGNIQ-ISWIDDT-------SAFVSLSQPEQVQIAVNTSKYAESYRIQT 79 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTTCSCC-CEEEETT-------EEEEECSCHHHHHHHHHHHHHCCSSEEEE
T ss_pred CeEEEE-eCChhhhhHHHHHHhhccCCEE-EEEEcCC-------eEEEEecCHHHHHHHHHhcccCCceEEEE
Confidence 456777 9999999999999999999654 6676662 69999999998877776553 33344433
No 385
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.12 E-value=0.0019 Score=44.49 Aligned_cols=88 Identities=14% Similarity=0.172 Sum_probs=67.1
Q ss_pred cceeEEeehhhHhhhhhcCCCcchhhchhHHHHHHhccc-C----CceeEEEEeecccccCCCccceeeecccccCCCCc
Q psy14193 22 SKLKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKP-Y----GEVETVRFRSVPVADITLPRKACIKMNKVHEKRTN 96 (239)
Q Consensus 22 ~~~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~-~----G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~ 96 (239)
.++.|.|......... +.|.-+|++ - |+|.+++. ..
T Consensus 7 ~~~~I~V~~lPp~~~~--------------e~L~LYFEn~rrsGGG~V~~v~~--~~----------------------- 47 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPD--------------ELLTLYFENRRRSGGGPVLSWQR--LG----------------------- 47 (104)
T ss_dssp CCCEEEEESCCTTSCH--------------HHHHHHHHCTTTTCCCCEEEEEE--ET-----------------------
T ss_pred CccEEEEECCCCCCCh--------------hHheEEEeCCCcCCCceeeEEEE--cC-----------------------
Confidence 3567777655443332 378889987 2 68999884 11
Q ss_pred ceEEEEeCCHHHHHHHHHhCCCccCCeeEEEeccCCCCCCCCcEEEEcCCCCCCc
Q psy14193 97 MNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKSNSHSIFIGNIPFEAE 151 (239)
Q Consensus 97 G~afV~f~~~e~a~~Ai~~~~~~l~g~~i~v~~~~~~~~~~~~~l~V~nLp~~~t 151 (239)
+-|+|+|.+.+.|++.++...+.|.+.+|.|.+..+.. ..++++.+||+.++
T Consensus 48 ~~AvItF~d~~va~rVL~k~~H~L~~~~LsV~P~~~~~---~~r~ll~gl~~~t~ 99 (104)
T 2dhx_A 48 CGGVLTFREPADAERVLAQADHELHGAQLSLRPAPPRA---PARLLLQGLPPGTS 99 (104)
T ss_dssp TEEEEEESSHHHHHHHHTCSCCBSSSSBCEEEECCCCC---CCCCCCCSCCCCCC
T ss_pred CcEEEEEcChHHHHHHhcCCcceecCeEEEEEcCCCCC---cceEeeecCCCCCC
Confidence 35999999999999999877899999999998866553 56899999998875
No 386
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.06 E-value=0.0019 Score=45.90 Aligned_cols=57 Identities=21% Similarity=0.316 Sum_probs=47.1
Q ss_pred HHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEEEeCCHHHHHHHHHhCCCccC-CeeEEEecc
Q psy14193 52 SSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVID-EHTIRVDKA 130 (239)
Q Consensus 52 ~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV~f~~~e~a~~Ai~~~~~~l~-g~~i~v~~~ 130 (239)
..+...|++||+|.+... + ....+-.|.|.++.+|++|+..||..+. +-.|-|.+.
T Consensus 38 ~~VL~~F~~~G~Iv~~~~---~--------------------~~~NWihI~Y~s~~~A~rAL~kNG~ii~g~~mIGV~p~ 94 (119)
T 1wwh_A 38 SYILLQFAQYGNILKHVM---S--------------------NTGNWMHIRYQSKLQARKALSKDGRIFGESIMIGVKPC 94 (119)
T ss_dssp HHHHHHHHTTSCEEEEEE---C--------------------SSSSEEEEEESSHHHHHHHHTTTTCEETTTEECEEEEC
T ss_pred HHHHHHHHhhCcEEEecc---C--------------------CCCCeEEEEeCCHHHHHHHHHhCCeEecCCEEEEEEEC
Confidence 789999999999998762 1 1124899999999999999999999997 477888775
Q ss_pred C
Q psy14193 131 L 131 (239)
Q Consensus 131 ~ 131 (239)
.
T Consensus 95 ~ 95 (119)
T 1wwh_A 95 I 95 (119)
T ss_dssp C
T ss_pred C
Confidence 4
No 387
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=97.01 E-value=0.0021 Score=43.88 Aligned_cols=83 Identities=18% Similarity=0.143 Sum_probs=56.7
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCC--ceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeCCC
Q psy14193 138 SHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIG--KGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHT 215 (239)
Q Consensus 138 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~--kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~~~ 215 (239)
+-+|.|+.||+.+|++++.+.+++.-++..........+..+ -.-|||.|++.++...-....+|.++.. ..
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D------~k 82 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLD------SK 82 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEEC------TT
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEe------CC
Confidence 357999999999999999988887656544333322222211 2348999999998877777888887643 11
Q ss_pred CCCcceEEEEeC
Q psy14193 216 NIGKGFGYVNFK 227 (239)
Q Consensus 216 ~~~~G~~fv~f~ 227 (239)
| +..-|.|+|.
T Consensus 83 g-~~~~a~VE~A 93 (97)
T 2l08_A 83 G-LEYPAVVEFA 93 (97)
T ss_dssp C-CEEEEEEEEC
T ss_pred C-CEeeeEEEec
Confidence 2 3466777775
No 388
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=96.84 E-value=0.0019 Score=44.95 Aligned_cols=55 Identities=18% Similarity=0.276 Sum_probs=46.6
Q ss_pred HHHHHhcccC-----CceeEEEEeecccccCCCccceeeecccccCCCCcceEEEEeCCHHHHHHHHH-hCCCccCCeeE
Q psy14193 52 SSVTSMFKPY-----GEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALE-MNGHVIDEHTI 125 (239)
Q Consensus 52 ~~l~~~F~~~-----G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV~f~~~e~a~~Ai~-~~~~~l~g~~i 125 (239)
..|+.+.+++ |.|..+.| .+. -|=|+|+|.+...|-+|.- ++|..+.|++|
T Consensus 36 arIr~lve~~~~i~~g~i~KI~L--~pD---------------------H~GAivef~d~~~AgKasLaL~G~ef~gr~L 92 (117)
T 2l9w_A 36 SLICQFLQEEIHINEKDIRKILL--VSD---------------------FNGAIIIFRDSKFAAKMLMILNGSQFQGKVI 92 (117)
T ss_dssp HHHHHHHHHHTCCCTTTCSEEEE--ETT---------------------TTEEEEECSCHHHHHHHHHHHSSEEETTEEE
T ss_pred HHHHHHHhhhhccCccceeEEEE--ecC---------------------CCceEEEEccchhhHHHHhhcCCeeecCeEE
Confidence 5788888888 99999986 222 2459999999999999986 99999999999
Q ss_pred EEec
Q psy14193 126 RVDK 129 (239)
Q Consensus 126 ~v~~ 129 (239)
++.-
T Consensus 93 r~gT 96 (117)
T 2l9w_A 93 RSGT 96 (117)
T ss_dssp EEEC
T ss_pred EecC
Confidence 9864
No 389
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.79 E-value=0.0032 Score=44.71 Aligned_cols=62 Identities=10% Similarity=0.092 Sum_probs=48.9
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeE
Q psy14193 138 SHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNV 207 (239)
Q Consensus 138 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~ 207 (239)
...|.|-+.|+.. ...+.+.|++||+|.+.... + ...+-.|.|.+..+|.+|+. .||.++++
T Consensus 24 ~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~----~--~~NWihI~Y~s~~~A~rAL~-kNG~ii~g 85 (119)
T 1wwh_A 24 DTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMS----N--TGNWMHIRYQSKLQARKALS-KDGRIFGE 85 (119)
T ss_dssp GGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEEC----S--SSSEEEEEESSHHHHHHHHT-TTTCEETT
T ss_pred CCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccC----C--CCCeEEEEeCCHHHHHHHHH-hCCeEecC
Confidence 5789999999874 67788999999999987752 1 23489999999998887765 48888764
No 390
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.78 E-value=0.012 Score=40.58 Aligned_cols=64 Identities=17% Similarity=0.199 Sum_probs=49.8
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhc-----CCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHH----hCCcEeeEE
Q psy14193 138 SHSIFIGNIPFEAEEEELRKAFES-----CGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE----SCGEIDNVR 208 (239)
Q Consensus 138 ~~~l~V~nLp~~~t~~~l~~~F~~-----~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~----~~g~~~~~r 208 (239)
..+|.|.|||+.+.++.|.-+|++ =|+|.++.... +-|+|+|.+.+.|.+.+.. ++|..+...
T Consensus 8 ~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k~~H~L~~~~LsV~ 79 (104)
T 2dhx_A 8 GVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQADHELHGAQLSLR 79 (104)
T ss_dssp CCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTCSCCBSSSSBCEEE
T ss_pred ccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcCCcceecCeEEEEE
Confidence 579999999999999999999987 24788876643 3589999999977666554 566665554
Q ss_pred E
Q psy14193 209 L 209 (239)
Q Consensus 209 ~ 209 (239)
.
T Consensus 80 P 80 (104)
T 2dhx_A 80 P 80 (104)
T ss_dssp E
T ss_pred c
Confidence 4
No 391
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.67 E-value=0.0047 Score=42.17 Aligned_cols=54 Identities=22% Similarity=0.351 Sum_probs=43.5
Q ss_pred cEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhC
Q psy14193 139 HSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESC 201 (239)
Q Consensus 139 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~ 201 (239)
..+++ +.|+++...+|.++|++||.| .|+++-|- -|||.|.+++.|..|+..+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fggv-~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEEE-EEEEEETT-------EEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCCE-EEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 35666 999999999999999999943 46777662 69999999998877776553
No 392
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.44 E-value=0.0032 Score=45.32 Aligned_cols=72 Identities=18% Similarity=0.110 Sum_probs=46.6
Q ss_pred HHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCC-----CcceEEEEeCCHHHHHHHHHhCCCccCCeeEE
Q psy14193 52 SSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKR-----TNMNAYVRFKNLESVEKALEMNGHVIDEHTIR 126 (239)
Q Consensus 52 ~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~-----~~G~afV~f~~~e~a~~Ai~~~~~~l~g~~i~ 126 (239)
..+.+.|++||.|.+-. .... +.+.. .+. ...+.+ ...+-.|.|+++.+|.+|+..||..+.|..|-
T Consensus 21 ~~VI~~Fs~~G~IlE~~----~~~~-~~~~~--~~~-~~~~k~yP~f~g~NWikItYds~~~A~rAL~~NG~ii~G~mIG 92 (132)
T 3p3d_A 21 NQVIAYFQEFGTILEDF----EVLR-KPQAM--TVG-LQDRQFVPIFSGNSWTKITYDNPASAVDALLENGAVFNGVLLG 92 (132)
T ss_dssp HHHHHHHGGGSCBCSCC----GGGC-CC--------------CCCCCEETTEEEEEBSSHHHHHHHHTTTTCEETTEECE
T ss_pred HHHHHHHHhhceEeeec----cccc-ccccc--ccc-cccccccCccCCCcEEEEEcCCHHHHHHHHHhCCeEeCcEEEE
Confidence 57889999999987621 1000 00000 000 000011 23578999999999999999999999999888
Q ss_pred EeccC
Q psy14193 127 VDKAL 131 (239)
Q Consensus 127 v~~~~ 131 (239)
|.+..
T Consensus 93 V~Py~ 97 (132)
T 3p3d_A 93 VIPYT 97 (132)
T ss_dssp EEECC
T ss_pred EEECC
Confidence 88765
No 393
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.10 E-value=0.018 Score=39.74 Aligned_cols=59 Identities=17% Similarity=0.224 Sum_probs=48.9
Q ss_pred HHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEEEeCCHHHHHHHHH-hCCCccCCeeEEEecc
Q psy14193 52 SSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALE-MNGHVIDEHTIRVDKA 130 (239)
Q Consensus 52 ~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV~f~~~e~a~~Ai~-~~~~~l~g~~i~v~~~ 130 (239)
+.++++|..|+++.+..+ + +|-.=..|.|.++++|.+|-. +++..+.|+.++|..+
T Consensus 25 ~~~e~Lf~~~~~~~tF~~--l---------------------kSFRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YFg 81 (104)
T 1wey_A 25 AKFESLFRTYDKDTTFQY--F---------------------KSFKRVRINFSNPLSAADARLRLHKTEFLGKEMKLYFA 81 (104)
T ss_dssp HHHHHHHHTTCSSCEEEE--E---------------------TTTTEEEEECSSTTHHHHHHHTSTTSEETTEECEEECC
T ss_pred HHHHHHHHhhCcCcceee--c---------------------CcceEEEEEeCChHHHHHHHHHhccceecCceeEEEec
Confidence 689999999999988773 1 111237899999999999999 9999999999999888
Q ss_pred CCC
Q psy14193 131 LTT 133 (239)
Q Consensus 131 ~~~ 133 (239)
.+.
T Consensus 82 q~~ 84 (104)
T 1wey_A 82 QTL 84 (104)
T ss_dssp CCS
T ss_pred CCC
Confidence 744
No 394
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=95.57 E-value=0.02 Score=38.98 Aligned_cols=46 Identities=20% Similarity=0.432 Sum_probs=35.8
Q ss_pred hhchhHHHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEEEeCCHHHHHHHHH-hC
Q psy14193 46 SKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALE-MN 116 (239)
Q Consensus 46 ~k~~r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV~f~~~e~a~~Ai~-~~ 116 (239)
++..++.||.++|+.||.|. |++.+ | -.|||.|.+++.|..|+. +.
T Consensus 24 P~ewKt~DI~~lFs~fggv~-I~Wid---D---------------------TsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 24 PKEWKTSDLYQLFSAFGNIQ-ISWID---D---------------------TSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CTTCCHHHHHHHHTTTCSCC-CEEEE---T---------------------TEEEEECSCHHHHHHHHHHHH
T ss_pred ChhhhhHHHHHHhhccCCEE-EEEEc---C---------------------CeEEEEecCHHHHHHHHHhcc
Confidence 45677789999999999663 55421 1 269999999999999998 53
No 395
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=95.54 E-value=0.015 Score=39.72 Aligned_cols=46 Identities=20% Similarity=0.416 Sum_probs=36.3
Q ss_pred hhchhHHHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEEEeCCHHHHHHHHH-hC
Q psy14193 46 SKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALE-MN 116 (239)
Q Consensus 46 ~k~~r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV~f~~~e~a~~Ai~-~~ 116 (239)
++..++.||.++|++||.| .|++.+ + -.|||.|.+++.|..|+. +.
T Consensus 14 P~ewKt~Di~~lFs~fggv-~I~Wid---D---------------------TsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 14 PKEWKTSDLYQLFSAFGNI-QISWID---D---------------------TSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp CTTCCHHHHHHHTTTSEEE-EEEEEE---T---------------------TEEEEEEEEECHHHHHHHHHT
T ss_pred ChhhhhHHHHHHHhccCCE-EEEEEc---C---------------------CeEEEEecCHHHHHHHHHhcc
Confidence 4667778999999999965 455422 1 269999999999999999 64
No 396
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=94.00 E-value=0.033 Score=48.90 Aligned_cols=55 Identities=18% Similarity=0.218 Sum_probs=39.2
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHH
Q psy14193 138 SHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199 (239)
Q Consensus 138 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~ 199 (239)
.+.|+|. .|...++.+|.++|++||+|.++.+-.+. | -|+.|+|.+.+++. ++..
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~--g---~~~~vef~~~~~~~-~~~~ 107 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF--G---LYAVVEFCQKESIG-SLQN 107 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS--S---EEEEEECC---CCH-HHHS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC--C---eEEEEEeCCHHHHH-HHHh
Confidence 6799997 79999999999999999999998766542 2 59999999998554 4433
No 397
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=93.01 E-value=0.084 Score=37.93 Aligned_cols=72 Identities=14% Similarity=0.191 Sum_probs=47.8
Q ss_pred cEEEEcCCCCCCcHHHHHHHhhcCCCeeEE-EEeec------------CCCC-CCceEEEEEecChHHHHHHHHHhCCcE
Q psy14193 139 HSIFIGNIPFEAEEEELRKAFESCGEIDNV-RLIRD------------QHTN-IGKGFGYVNFKAEEEELRKAFESCGEI 204 (239)
Q Consensus 139 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v-~i~~~------------~~tg-~~kg~~fV~F~~~e~a~~a~~~~~g~~ 204 (239)
..|.|-+.|++. ...+.+.|++||.|.+- ...++ +..+ ....+..|.|.+..+|.+| +..||.+
T Consensus 8 ~~VtVFGFp~~~-~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rA-L~~NG~i 85 (132)
T 3p3d_A 8 LAILVFGYPETM-ANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDA-LLENGAV 85 (132)
T ss_dssp CEEEEECCCGGG-HHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHH-HTTTTCE
T ss_pred eEEEEEecCHHH-HHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHH-HHhCCeE
Confidence 467777887654 46777899999998762 11110 0000 1245889999999966655 5678888
Q ss_pred eeEEEEee
Q psy14193 205 DNVRLIRD 212 (239)
Q Consensus 205 ~~~r~l~~ 212 (239)
++|.++-|
T Consensus 86 i~G~mIGV 93 (132)
T 3p3d_A 86 FNGVLLGV 93 (132)
T ss_dssp ETTEECEE
T ss_pred eCcEEEEE
Confidence 88876554
No 398
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=92.39 E-value=0.049 Score=47.81 Aligned_cols=47 Identities=15% Similarity=0.164 Sum_probs=33.0
Q ss_pred HHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCc-ceEEEEeCCHHHHHHHHHhCCCccC
Q psy14193 52 SSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTN-MNAYVRFKNLESVEKALEMNGHVID 121 (239)
Q Consensus 52 ~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~-G~afV~f~~~e~a~~Ai~~~~~~l~ 121 (239)
.+|.++|++||+|.++.+ . . ++ -||.|+|.+.+++..++...+....
T Consensus 67 ~~l~~y~~~~g~i~~~~~--~-~--------------------~~g~~~~vef~~~~~~~~~~~~~~~p~~ 114 (464)
T 3pq1_A 67 NKFLKYLSQFGPINNHFF--Y-E--------------------SFGLYAVVEFCQKESIGSLQNGTHTPXX 114 (464)
T ss_dssp CHHHHHHGGGSCCCCEEE--E-C--------------------SSSEEEEEECC---CCHHHHSSCCCCCC
T ss_pred HHHHHHHHhcCCcceEEE--E-c--------------------cCCeEEEEEeCCHHHHHHHHhccCCCcc
Confidence 799999999999999864 1 1 12 3999999999999988764444433
No 399
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=78.99 E-value=7.1 Score=34.56 Aligned_cols=55 Identities=22% Similarity=0.335 Sum_probs=43.4
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhC
Q psy14193 138 SHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESC 201 (239)
Q Consensus 138 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~ 201 (239)
...++++ +|..+...+|.+.|+.||.+ +|+++.+ ..|||.|.+.+.|..++..+.
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widd-------t~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDD-------TSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSS-------SEEEEECSCHHHHHHHHHHHT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcC-------CeEEEEECCHHHHHHHHHHHH
Confidence 5567776 99999999999999999954 5665544 269999999998877777663
No 400
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=50.82 E-value=23 Score=31.21 Aligned_cols=44 Identities=18% Similarity=0.366 Sum_probs=33.7
Q ss_pred hhHHHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEEEeCCHHHHHHHHH-hCC
Q psy14193 49 HALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALE-MNG 117 (239)
Q Consensus 49 ~r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV~f~~~e~a~~Ai~-~~~ 117 (239)
.++.+|.++|+.||.| +|++ .. ...|||.|.+.++|..++. +..
T Consensus 451 ~~~~~i~~~fs~fg~v-~V~w---id---------------------dt~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 451 WKTSDLYQLFSAFGNI-QISW---ID---------------------DTSAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp CCHHHHHHHGGGGCCC-EEEE---CS---------------------SSEEEEECSCHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHhcCCE-EEEE---Ec---------------------CCeEEEEECCHHHHHHHHHHHHh
Confidence 4458999999999965 4553 11 1369999999999999998 653
No 401
>1xn9_A 30S ribosomal protein S24E; beta+alpha, GFT structural genomics, protein structure initiative, PSI, NESG, MAR11; NMR {Methanosarcina mazei} SCOP: d.12.1.3
Probab=49.00 E-value=28 Score=23.50 Aligned_cols=78 Identities=10% Similarity=0.162 Sum_probs=43.4
Q ss_pred hcccccccccccccceeEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccCCceeEEEEeecccccCCCccceeeecc
Q psy14193 9 SLTMIPTQNRNLMSKLKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMN 88 (239)
Q Consensus 9 ~~~~~~~~n~~~~~~~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~ 88 (239)
.+..+...+..+++-+++.+.-.. .. ....+.+-.+.|...+..=..+.-|. . +.-
T Consensus 2 ei~I~~~~~N~LL~Rke~~~~v~H-~~-------~tpsk~eirekLAk~~~~~~~~Vvv~--~--------------~~t 57 (101)
T 1xn9_A 2 DIKIIKDKKNPLLNRRELDFIVKY-EG-------STPSRNDVRNKLAAMLNAPLELLVIQ--R--------------IKT 57 (101)
T ss_dssp EEEEEEEEEETTTTEEEEEEEEEC-SS-------SCCCHHHHHHHHHHHTTCCTTTEEEE--E--------------EEE
T ss_pred cEEEEEeeecCCcCcEEEEEEEEc-CC-------CCCCHHHHHHHHHHHHCCCCCEEEEE--e--------------eEe
Confidence 345566778888899998886443 10 11112222256666666655554443 1 122
Q ss_pred cccCCCCcceEEEEeCCHHHHHH
Q psy14193 89 KVHEKRTNMNAYVRFKNLESVEK 111 (239)
Q Consensus 89 ~~~t~~~~G~afV~f~~~e~a~~ 111 (239)
....+++.|||.| |.+.+.|.+
T Consensus 58 ~fG~gkstG~a~I-Yds~e~akk 79 (101)
T 1xn9_A 58 EYGMQESKGYAKL-YEDADRMKQ 79 (101)
T ss_dssp CSSSSEEEEEEEE-CSCHHHHHH
T ss_pred cCCCceEEEEEEE-ECCHHHHHh
Confidence 2334567788875 677766654
No 402
>3ulj_A LIN28B, DNA-binding protein; beta barrel, cold shock domain fold, nucleic acid binding, D binding protein; 1.06A {Silurana} PDB: 4a4i_A
Probab=48.79 E-value=4.8 Score=26.74 Aligned_cols=16 Identities=25% Similarity=0.652 Sum_probs=12.6
Q ss_pred eeCCCCCCcceEEEEe
Q psy14193 211 RDQHTNIGKGFGYVNF 226 (239)
Q Consensus 211 ~~~~~~~~~G~~fv~f 226 (239)
+|+|-+..||||||.-
T Consensus 12 ~VKWFn~~KGfGFI~~ 27 (90)
T 3ulj_A 12 HCKWFNVRMGFGFISM 27 (90)
T ss_dssp EEEEEETTTTEEEEEE
T ss_pred EEEEeeCCCCeEEeEe
Confidence 4677778899999963
No 403
>1ywx_A 30S ribosomal protein S24E; GFT MRR16, nesgc, structural genomics, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: d.12.1.3
Probab=43.74 E-value=51 Score=22.25 Aligned_cols=78 Identities=12% Similarity=0.152 Sum_probs=43.6
Q ss_pred hcccccccccccccceeEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccCCceeEEEEeecccccCCCccceeeecc
Q psy14193 9 SLTMIPTQNRNLMSKLKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMN 88 (239)
Q Consensus 9 ~~~~~~~~n~~~~~~~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~ 88 (239)
.+..+...+..+++-+++.+.-.... ....+.+-.+.|...+..=..+.-|. . +.-
T Consensus 2 ei~I~~~~~N~LL~Rke~~~~v~H~~--------~tpsk~eirekLAk~~~~~~d~Vvv~--~--------------~~T 57 (102)
T 1ywx_A 2 DISIISDRNNPLLQRREIKFTVSFDA--------ATPSIKDVKMKLVAVLNANKQVLVVD--T--------------LDQ 57 (102)
T ss_dssp EEEEEEEEEETTTTEEEEEEEEECSS--------CCCCHHHHHHHHHHHHTSCSTTEEEE--E--------------EEE
T ss_pred cEEEEEeeecCCcCcEEEEEEEEcCC--------CCCCHHHHHHHHHHHHCCCCCEEEEE--c--------------cEe
Confidence 45566777888889999888644311 11112222256666666555544443 1 122
Q ss_pred cccCCCCcceEEEEeCCHHHHHH
Q psy14193 89 KVHEKRTNMNAYVRFKNLESVEK 111 (239)
Q Consensus 89 ~~~t~~~~G~afV~f~~~e~a~~ 111 (239)
....+++.|||.| |.+.+.|.+
T Consensus 58 ~fG~gkstG~a~I-Yds~e~akk 79 (102)
T 1ywx_A 58 IFGKLEAEGYAKI-YNDEKAMAT 79 (102)
T ss_dssp CSSSSEEEEEEEE-CSCHHHHHH
T ss_pred cCCCceEEEEEEE-ECCHHHHHh
Confidence 3344667788875 777776643
No 404
>2v94_A RPS24, 30S ribosomal protein S24E; ribonucleoprotein; 1.90A {Pyrococcus abyssi} SCOP: d.12.1.3
Probab=42.95 E-value=52 Score=22.43 Aligned_cols=79 Identities=9% Similarity=0.193 Sum_probs=43.2
Q ss_pred hcccccccccccccceeEEeehhhHhhhhhcCCCcchhhchhHHHHHHhcccCCceeEEEEeecccccCCCccceeeecc
Q psy14193 9 SLTMIPTQNRNLMSKLKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMN 88 (239)
Q Consensus 9 ~~~~~~~~n~~~~~~~~v~v~~~~~~~~~~~~~~~~~~k~~r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~ 88 (239)
.+..+...+..+++-+++.+.-..... ....+.+-.+.|...+..=..+.-|. .+ .-
T Consensus 10 ei~i~k~~~N~LL~Rke~~~~v~Hpg~-------~tpsk~eirekLA~~~~~~~d~Vvv~--~~--------------~T 66 (107)
T 2v94_A 10 EIKITEVKENKLIGRKEIYFEIYHPGE-------PTPSRKDVKGKLVAMLDLNPETTVIQ--YI--------------RS 66 (107)
T ss_dssp EEEEEEEEEETTTTEEEEEEEEECTTS-------CCCCHHHHHHHHHHHHTCCGGGEEEE--EE--------------EC
T ss_pred EEEEEEeeecCCcCcEEEEEEEEeCCC-------CCCCHHHHHHHHHHHHCCCCCEEEEE--ee--------------Ee
Confidence 355566778888899998885433210 01111222256666666544444333 11 12
Q ss_pred cccCCCCcceEEEEeCCHHHHHH
Q psy14193 89 KVHEKRTNMNAYVRFKNLESVEK 111 (239)
Q Consensus 89 ~~~t~~~~G~afV~f~~~e~a~~ 111 (239)
....+++.|||.| |++.+.|.+
T Consensus 67 ~fG~gkstG~a~I-Yds~e~akk 88 (107)
T 2v94_A 67 YFGSYKSKGYAKY-YYDKDRMLY 88 (107)
T ss_dssp CTTCSEEEEEEEE-ESSHHHHHH
T ss_pred cCCCceEEEEEEE-ECCHHHHHh
Confidence 2334567788875 777776654
No 405
>2k5n_A Putative cold-shock protein; GFT protein structure, PSI, nesgc, OB fold, cold shock structural genomics; NMR {Pectobacterium atrosepticum}
Probab=38.78 E-value=10 Score=24.01 Aligned_cols=16 Identities=25% Similarity=0.376 Sum_probs=11.0
Q ss_pred CCCCCCcceEEEEeCC
Q psy14193 213 QHTNIGKGFGYVNFKV 228 (239)
Q Consensus 213 ~~~~~~~G~~fv~f~~ 228 (239)
.+-+..+|||||.-++
T Consensus 8 kwfn~~KGfGFI~~~d 23 (74)
T 2k5n_A 8 TTWFKDKGFGFIKDEN 23 (74)
T ss_dssp EEEETTTTEEEEEESS
T ss_pred EEEECCCCeEEEecCC
Confidence 3344578899988765
No 406
>2kcm_A Cold shock domain family protein; nucleic acid binding protein, beta barrel, structural genomi 2, protein structure initiative; NMR {Shewanella oneidensis}
Probab=36.36 E-value=12 Score=23.72 Aligned_cols=16 Identities=13% Similarity=0.173 Sum_probs=11.5
Q ss_pred CCCCCCcceEEEEeCC
Q psy14193 213 QHTNIGKGFGYVNFKV 228 (239)
Q Consensus 213 ~~~~~~~G~~fv~f~~ 228 (239)
.+-+..+|||||.-++
T Consensus 6 kwfn~~KGfGFI~~~d 21 (74)
T 2kcm_A 6 VSYLAAKKYGFIQGDD 21 (74)
T ss_dssp EEEETTTTEEEEEETT
T ss_pred EEEECCCCEEEEecCC
Confidence 3445578999998765
No 407
>3cam_A Cold-shock domain family protein; cold shock protein, chain SWAP, STRU genomics, oxford protein production facility, OPPF, gene RE; 2.60A {Neisseria meningitidis MC58}
Probab=35.12 E-value=13 Score=22.97 Aligned_cols=16 Identities=31% Similarity=0.540 Sum_probs=11.4
Q ss_pred CCCCCCcceEEEEeCC
Q psy14193 213 QHTNIGKGFGYVNFKV 228 (239)
Q Consensus 213 ~~~~~~~G~~fv~f~~ 228 (239)
.+-+..+|||||.-++
T Consensus 7 k~fn~~kGfGFI~~~~ 22 (67)
T 3cam_A 7 KWFNDAKGFGFITPDE 22 (67)
T ss_dssp EEEETTTTEEEEEETT
T ss_pred EEEECCCCeEEEecCC
Confidence 3344578999998765
No 408
>1c9o_A CSPB, cold-shock protein; beta barrel, homodimer, transcription; 1.17A {Bacillus caldolyticus} SCOP: b.40.4.5 PDB: 2hax_A 1hz9_A 1hzb_A 1i5f_A 1hza_A 1hzc_A 3pf4_A 1csq_A 1nmf_A 1nmg_A 1csp_A 2f52_A 2es2_A 3pf5_A 2i5m_X 2i5l_X
Probab=32.37 E-value=15 Score=22.49 Aligned_cols=15 Identities=27% Similarity=0.574 Sum_probs=10.6
Q ss_pred CCCCCcceEEEEeCC
Q psy14193 214 HTNIGKGFGYVNFKV 228 (239)
Q Consensus 214 ~~~~~~G~~fv~f~~ 228 (239)
+-+..+|||||.-++
T Consensus 8 ~fn~~kGfGFI~~~~ 22 (66)
T 1c9o_A 8 WFNNEKGYGFIEVEG 22 (66)
T ss_dssp EEETTTTEEEEEETT
T ss_pred EEECCCCeEEEecCC
Confidence 334568999998765
No 409
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=32.01 E-value=16 Score=26.57 Aligned_cols=27 Identities=4% Similarity=0.008 Sum_probs=17.5
Q ss_pred HHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEEEeC
Q psy14193 53 SVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFK 104 (239)
Q Consensus 53 ~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV~f~ 104 (239)
|+.++|...|.|.-.. ..+|||||.-.
T Consensus 3 ~~~~l~~~~G~Vkwfn-------------------------~~kGfGFI~~~ 29 (148)
T 3ts2_A 3 DEPQLLHGAGICKWFN-------------------------VRMGFGFLSMT 29 (148)
T ss_dssp ---CCEEEEEEEEEEE-------------------------TTTTEEEEEEE
T ss_pred cccccccceeEEEEEE-------------------------CCCCeeEEeeC
Confidence 5667788888776533 34699999876
No 410
>1h95_A CSD, Y-box binding protein; translation factor, transcription factor, OB-fold, 5- stranded anti-parallel beta-barrel, single stranded DNA binding; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=31.97 E-value=13 Score=23.86 Aligned_cols=17 Identities=24% Similarity=0.536 Sum_probs=12.2
Q ss_pred eCCCCCCcceEEEEeCC
Q psy14193 212 DQHTNIGKGFGYVNFKV 228 (239)
Q Consensus 212 ~~~~~~~~G~~fv~f~~ 228 (239)
|.+-+..+|||||.-++
T Consensus 13 Vkwfn~~kGfGFI~~~~ 29 (79)
T 1h95_A 13 VKWFNVRNGYGFINRND 29 (79)
T ss_dssp EEEEETTTTEEEEEEGG
T ss_pred EEEEECCCCcEEEecCC
Confidence 44445679999998765
No 411
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=31.81 E-value=1.1e+02 Score=20.04 Aligned_cols=57 Identities=19% Similarity=0.261 Sum_probs=37.5
Q ss_pred hHHHHHHhcccCCceeEEEEeecccccCCCccceeeecccccCCCCcceEEEEeCCHHHHHHHHH-hCCCccC
Q psy14193 50 ALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALE-MNGHVID 121 (239)
Q Consensus 50 r~~~l~~~F~~~G~I~~v~l~~~~~~~~~~~~~~~~~~~~~~t~~~~G~afV~f~~~e~a~~Ai~-~~~~~l~ 121 (239)
+.+++.+..+..+++.-... ++.+... + ....+-|||.|.+.+++..-.+ ++|+.+.
T Consensus 14 teeeF~~~l~~~~~~d~~~f--v~G~~s~----------~---~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~ 71 (91)
T 1uw4_A 14 TKEQLQEHLQPMPEHDYFEF--FSNDTSL----------Y---PHMYARAYINFKNQEDIILFRDRFDGYVFL 71 (91)
T ss_dssp CHHHHHHHHCSCCCEEEEEE--EESCCSS----------T---TCCCEEEEEEESSSHHHHHHHHHHTTCEEE
T ss_pred CHHHHHHHhcCcccceEEEE--eCCccCC----------C---CCcceEEEEEeCCHHHHHHHHHHhCCcEEE
Confidence 33688888888887654443 1211110 0 1223459999999999999999 9998773
No 412
>2g1d_A 30S ribosomal protein S24E; complete proteome, ribosome; NMR {Thermoplasma acidophilum} SCOP: d.12.1.3
Probab=31.53 E-value=27 Score=23.46 Aligned_cols=23 Identities=4% Similarity=0.167 Sum_probs=16.4
Q ss_pred hcccccccccccccceeEEeehh
Q psy14193 9 SLTMIPTQNRNLMSKLKVFLNIW 31 (239)
Q Consensus 9 ~~~~~~~~n~~~~~~~~v~v~~~ 31 (239)
.+..+...+..+++-+++.+.-.
T Consensus 2 ei~I~~~~~N~LL~Rke~~~~v~ 24 (98)
T 2g1d_A 2 DLIIKEKRDNPILKRKEIKYVLK 24 (98)
T ss_dssp EEEEEEEEECSSSCEEEEEEEEE
T ss_pred cEEEEEeeecCCcCcEEEEEEEE
Confidence 34556667788889999888543
No 413
>3a0j_A Cold shock protein; OB-fold, cytoplasm, transcription, structural genomics, NPPSFA; 1.65A {Thermus thermophilus}
Probab=31.23 E-value=15 Score=23.08 Aligned_cols=15 Identities=27% Similarity=0.545 Sum_probs=10.5
Q ss_pred CCCCCcceEEEEeCC
Q psy14193 214 HTNIGKGFGYVNFKV 228 (239)
Q Consensus 214 ~~~~~~G~~fv~f~~ 228 (239)
+-+..+|||||.-++
T Consensus 8 ~fn~~kGfGFI~~~~ 22 (73)
T 3a0j_A 8 WFNAEKGYGFIEREG 22 (73)
T ss_dssp EEETTTTEEEEECTT
T ss_pred EEECCCCEEEEecCC
Confidence 334568999998664
No 414
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=29.80 E-value=1.7e+02 Score=21.68 Aligned_cols=54 Identities=20% Similarity=0.300 Sum_probs=37.2
Q ss_pred cEEEEcCCCC-C--------CcHHHHHHHh--hcCCCeeEEEEeecCCCCCCceEEEEEecChHHHHH
Q psy14193 139 HSIFIGNIPF-E--------AEEEELRKAF--ESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELR 195 (239)
Q Consensus 139 ~~l~V~nLp~-~--------~t~~~l~~~F--~~~G~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~ 195 (239)
..+.|-|+|. . ....+|.+.| ..|.++. ++.+.++ .| ..|++.|.|.+.-.-.+
T Consensus 13 wmgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~-~G-h~g~aIv~F~~dw~Gf~ 77 (172)
T 4e8u_A 13 WKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNY-LG-HSGTAIVEFNKDWNGLH 77 (172)
T ss_dssp CEEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECS-SB-EEEEEEEECCSSHHHHH
T ss_pred CEEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccC-CC-CceeEEEEecCChHHHH
Confidence 4667778886 2 3457899977 8998765 5555553 23 68999999988654433
No 415
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=29.36 E-value=1.1e+02 Score=19.93 Aligned_cols=20 Identities=15% Similarity=0.111 Sum_probs=17.0
Q ss_pred CcceEEEEeCCHHHHHHHHH
Q psy14193 95 TNMNAYVRFKNLESVEKALE 114 (239)
Q Consensus 95 ~~G~afV~f~~~e~a~~Ai~ 114 (239)
-.||-||+....++...++.
T Consensus 49 fPGYVfVe~~~~~~~~~~I~ 68 (92)
T 3lpe_A 49 LKGYVLVEAETKGDVEELIK 68 (92)
T ss_dssp STTEEEEEESSHHHHHHHHT
T ss_pred cCCEEEEEEecchhHHHHHH
Confidence 46899999999988887776
No 416
>3aqq_A Calcium-regulated heat stable protein 1; compact beta-barrel, cold shock domain, ssDNA binding, DNA B protein; 2.80A {Homo sapiens}
Probab=28.66 E-value=18 Score=26.26 Aligned_cols=27 Identities=19% Similarity=0.070 Sum_probs=18.2
Q ss_pred HhCCcEeeEEEEeeCCCCCCcceEEEEeCC
Q psy14193 199 ESCGEIDNVRLIRDQHTNIGKGFGYVNFKV 228 (239)
Q Consensus 199 ~~~g~~~~~r~l~~~~~~~~~G~~fv~f~~ 228 (239)
...|....|++... +..+|||||.-++
T Consensus 57 ~~~g~m~~GtVKwF---n~~KGfGFI~~dd 83 (147)
T 3aqq_A 57 ASQGPVYKGVCKCF---CRSKGHGFITPAD 83 (147)
T ss_dssp HHHSCCEEEEEEEE---ETTTTEEEEEESS
T ss_pred cccCCccceEEEEE---eCCCCeEEeccCC
Confidence 34566666655444 4568999999876
No 417
>3i2z_B RNA chaperone, negative regulator of CSPA transcription; beta barrel, DNA binding protein/transcription, cytoplasm, gene regulation; 1.10A {Salmonella typhimurium} SCOP: b.40.4.5 PDB: 2l15_A 1mjc_A 3mef_A
Probab=28.27 E-value=20 Score=22.38 Aligned_cols=15 Identities=33% Similarity=0.558 Sum_probs=10.5
Q ss_pred CCCCCcceEEEEeCC
Q psy14193 214 HTNIGKGFGYVNFKV 228 (239)
Q Consensus 214 ~~~~~~G~~fv~f~~ 228 (239)
+-+..+|||||.-++
T Consensus 12 ~fn~~kGfGFI~~~~ 26 (71)
T 3i2z_B 12 WFNESKGFGFITPED 26 (71)
T ss_dssp EEETTTTEEEEEETT
T ss_pred EEECCCCcEEEecCC
Confidence 334578899998765
No 418
>1g6p_A Cold shock protein TMCSP; greek-KEY, beta barrel, OB-fold, structural genomics; NMR {Thermotoga maritima} SCOP: b.40.4.5
Probab=27.53 E-value=21 Score=21.88 Aligned_cols=14 Identities=21% Similarity=0.539 Sum_probs=10.2
Q ss_pred CCCCcceEEEEeCC
Q psy14193 215 TNIGKGFGYVNFKV 228 (239)
Q Consensus 215 ~~~~~G~~fv~f~~ 228 (239)
-+..+|||||.-++
T Consensus 8 fn~~kGfGFI~~~~ 21 (66)
T 1g6p_A 8 FDSKKGYGFITKDE 21 (66)
T ss_dssp EETTTTEEEEEETT
T ss_pred EECCCCEEEEecCC
Confidence 34568999998764
No 419
>2lss_A Cold shock-like protein; CSD, CSP, oligonucleotide binding F fold, RNA binding protein, DNA binding protein; NMR {Rickettsia rickettsii}
Probab=31.22 E-value=15 Score=22.90 Aligned_cols=17 Identities=24% Similarity=0.370 Sum_probs=11.5
Q ss_pred eCCCCCCcceEEEEeCC
Q psy14193 212 DQHTNIGKGFGYVNFKV 228 (239)
Q Consensus 212 ~~~~~~~~G~~fv~f~~ 228 (239)
+.+-+..+|||||.-++
T Consensus 9 Vk~fn~~kGfGFI~~~~ 25 (70)
T 2lss_A 9 VKWYNSTKNFGFIEQDN 25 (70)
Confidence 34445578888887665
No 420
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=21.87 E-value=66 Score=19.79 Aligned_cols=58 Identities=5% Similarity=0.058 Sum_probs=36.3
Q ss_pred CCcHHHHHHHhhcCC-----CeeEEEEeecCCCCCCceEEEEEecChHHHHHHHHHhCCcEeeEEEEeeCCC
Q psy14193 149 EAEEEELRKAFESCG-----EIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHT 215 (239)
Q Consensus 149 ~~t~~~l~~~F~~~G-----~i~~v~i~~~~~tg~~kg~~fV~F~~~e~a~~a~~~~~g~~~~~r~l~~~~~ 215 (239)
.+...+|-.++..-+ .|-.+++..+ |.||+-.... +.+++..+++..+.++.+++..+
T Consensus 12 ~~~p~~ivg~i~~~~gi~~~~IG~I~i~d~--------~s~v~v~~~~-~~~~~~~l~~~~i~g~~~~v~~~ 74 (76)
T 2g0c_A 12 KIRAVDFVGTIAKIDGVSADDIGIITIMDN--------ASYVEILNGK-GPHVLKVMKNTTVKGKQLKVNKA 74 (76)
T ss_dssp ---CHHHHHHHHTSTTCCGGGEEEEEECSS--------CEEEEECTTC-HHHHHHHHTTCCC---CCCEEEC
T ss_pred CCCHHHHHHHHHHccCCChhhccEEEEeCC--------cEEEEECHHH-HHHHHHHhccccCcCceEEEEEC
Confidence 345566666665433 3445666432 7899998888 88899999999888888877543
Done!