Your job contains 1 sequence.
>psy14193
MLIIKNFLSLTMIPTQNRNLMSKLKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKP
YGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVI
DEHTIRVDKALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGK
GFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKVSFTTLSSIFSK
The BLAST search returned 8 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy14193
(239 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
DICTYBASE|DDB_G0289941 - symbol:DDB_G0289941 "Nucleolar p... 306 5.5e-27 1
ZFIN|ZDB-GENE-040718-77 - symbol:rbm34 "RNA binding motif... 296 3.2e-26 1
UNIPROTKB|F1RGW8 - symbol:RBM34 "Uncharacterized protein"... 292 8.4e-26 1
UNIPROTKB|P42696 - symbol:RBM34 "RNA-binding protein 34" ... 292 8.6e-26 1
UNIPROTKB|J9NU83 - symbol:RBM34 "Uncharacterized protein"... 276 4.2e-24 1
MGI|MGI:1098653 - symbol:Rbm34 "RNA binding motif protein... 276 4.2e-24 1
UNIPROTKB|E2R3E1 - symbol:RBM34 "Uncharacterized protein"... 276 6.8e-24 1
RGD|1310161 - symbol:Rbm34 "RNA binding motif protein 34"... 275 8.8e-24 1
SGD|S000005401 - symbol:NOP12 "Protein involved in pre-rR... 269 6.5e-23 1
UNIPROTKB|F1NIM5 - symbol:RBM34 "Uncharacterized protein"... 258 4.3e-22 1
POMBASE|SPAC16E8.06c - symbol:nop12 "RNA-binding protein ... 256 1.5e-21 1
WB|WBGene00008688 - symbol:F11A10.7 species:6239 "Caenorh... 248 6.6e-21 1
CGD|CAL0002615 - symbol:orf19.809 species:5476 "Candida a... 247 1.8e-20 1
UNIPROTKB|A2A2V2 - symbol:RBM34 "RNA-binding protein 34" ... 237 1.5e-19 1
TAIR|locus:2172937 - symbol:AT5G46840 species:3702 "Arabi... 235 5.0e-19 1
ASPGD|ASPL0000048939 - symbol:AN1452 species:162425 "Emer... 178 8.4e-13 1
UNIPROTKB|Q1JQ73 - symbol:elavl1-a "ELAV-like protein 1-A... 122 1.1e-09 2
UNIPROTKB|Q7ZYE9 - symbol:hnrnpab "Hnrpab-prov protein" s... 157 1.1e-09 1
DICTYBASE|DDB_G0290307 - symbol:DDB_G0290307 "ELAVL1-like... 115 2.6e-09 2
UNIPROTKB|F1NIB4 - symbol:HNRNPAB "Uncharacterized protei... 146 3.7e-09 1
UNIPROTKB|Q9XSY6 - symbol:Q9XSY6 "HnRNP A/B related prote... 148 1.1e-08 1
FB|FBgn0005649 - symbol:Rox8 "Rox8" species:7227 "Drosoph... 152 1.2e-08 1
FB|FBgn0086675 - symbol:fne "found in neurons" species:72... 120 1.2e-08 2
UNIPROTKB|F1PA19 - symbol:HNRNPAB "Uncharacterized protei... 147 1.2e-08 1
UNIPROTKB|Q3ZC44 - symbol:HNRNPAB "Uncharacterized protei... 147 1.6e-08 1
UNIPROTKB|F1NIB2 - symbol:HNRNPAB "Uncharacterized protei... 146 1.7e-08 1
FB|FBgn0032620 - symbol:CG12288 species:7227 "Drosophila ... 149 2.6e-08 1
UNIPROTKB|D6R9P3 - symbol:HNRNPAB "Heterogeneous nuclear ... 145 2.9e-08 1
UNIPROTKB|D6RD18 - symbol:HNRNPAB "Heterogeneous nuclear ... 145 3.0e-08 1
UNIPROTKB|D6RBZ0 - symbol:HNRNPAB "Heterogeneous nuclear ... 145 4.5e-08 1
UNIPROTKB|Q99729 - symbol:HNRNPAB "Heterogeneous nuclear ... 145 4.6e-08 1
UNIPROTKB|Q91903 - symbol:elavl2 "ELAV-like protein 2" sp... 110 5.3e-08 2
ZFIN|ZDB-GENE-040704-9 - symbol:elavl2 "ELAV (embryonic l... 108 5.8e-08 2
UNIPROTKB|D4A7H6 - symbol:Elavl2 "ELAV-like protein 2" sp... 107 8.3e-08 2
UNIPROTKB|Q12926 - symbol:ELAVL2 "ELAV-like protein 2" sp... 107 9.4e-08 2
RGD|628611 - symbol:Elavl2 "ELAV (embryonic lethal, abnor... 107 9.4e-08 2
UNIPROTKB|Q8CH84 - symbol:Elavl2 "ELAV-like protein 2" sp... 107 9.4e-08 2
MGI|MGI:1100887 - symbol:Elavl2 "ELAV (embryonic lethal, ... 107 9.5e-08 2
UNIPROTKB|B1AM49 - symbol:ELAVL2 "ELAV-like protein 2" sp... 107 1.2e-07 2
UNIPROTKB|G3N063 - symbol:ELAVL2 "Uncharacterized protein... 107 1.2e-07 2
UNIPROTKB|E2RI94 - symbol:ELAVL2 "Uncharacterized protein... 107 1.2e-07 2
MGI|MGI:1330294 - symbol:Hnrnpab "heterogeneous nuclear r... 140 1.3e-07 1
UNIPROTKB|Q9QX80 - symbol:Hnrnpab "Hnrpab protein" specie... 140 1.3e-07 1
UNIPROTKB|A4QUF0 - symbol:PAB1 "Polyadenylate-binding pro... 114 1.4e-07 2
RGD|69255 - symbol:Hnrnpab "heterogeneous nuclear ribonuc... 140 1.5e-07 1
MGI|MGI:109157 - symbol:Elavl3 "ELAV (embryonic lethal, a... 106 1.7e-07 2
RGD|628892 - symbol:Elavl3 "ELAV (embryonic lethal, abnor... 106 1.7e-07 2
UNIPROTKB|F1SNK9 - symbol:ELAVL2 "Uncharacterized protein... 106 1.8e-07 2
UNIPROTKB|E9PTS0 - symbol:Hnrnpab "Protein Hnrnpab" speci... 140 2.0e-07 1
UNIPROTKB|Q9QX81 - symbol:Hnrnpab "RCG34663, isoform CRA_... 140 2.0e-07 1
UNIPROTKB|H0YA96 - symbol:HNRNPD "Heterogeneous nuclear r... 134 2.0e-07 1
UNIPROTKB|E1C240 - symbol:ELAVL2 "Uncharacterized protein... 105 2.1e-07 2
ZFIN|ZDB-GENE-070424-97 - symbol:hnrnpd "heterogeneous nu... 139 2.3e-07 1
ZFIN|ZDB-GENE-040426-2516 - symbol:zgc:77052 "zgc:77052" ... 138 2.9e-07 1
SGD|S000005119 - symbol:NOP13 "Nucleolar protein found in... 140 3.0e-07 1
WB|WBGene00011155 - symbol:R09B3.2 species:6239 "Caenorha... 120 3.0e-07 1
RGD|1309982 - symbol:Hnrnpc "heterogeneous nuclear ribonu... 120 3.0e-07 1
UNIPROTKB|F1PVV1 - symbol:ELAVL3 "Uncharacterized protein... 104 3.0e-07 2
UNIPROTKB|Q14576 - symbol:ELAVL3 "ELAV-like protein 3" sp... 104 3.0e-07 2
UNIPROTKB|F1SA16 - symbol:ELAVL3 "Uncharacterized protein... 104 3.0e-07 2
UNIPROTKB|F1N4V6 - symbol:ELAVL3 "Uncharacterized protein... 104 3.1e-07 2
TAIR|locus:2077137 - symbol:AT3G46020 species:3702 "Arabi... 119 3.9e-07 1
ZFIN|ZDB-GENE-000210-17 - symbol:hug "HuG" species:7955 "... 104 3.9e-07 2
UNIPROTKB|Q5ZIH1 - symbol:HNRNPD "Uncharacterized protein... 135 4.0e-07 1
UNIPROTKB|F1NCW4 - symbol:HNRNPD "Uncharacterized protein... 135 4.1e-07 1
UNIPROTKB|I3LPG0 - symbol:MSI1 "Uncharacterized protein" ... 137 4.6e-07 1
UNIPROTKB|Q5ZI72 - symbol:HNRPDL "Heterogeneous nuclear r... 136 4.8e-07 1
UNIPROTKB|F1MS42 - symbol:MSI1 "Uncharacterized protein" ... 137 4.9e-07 1
UNIPROTKB|O43347 - symbol:MSI1 "RNA-binding protein Musas... 137 5.6e-07 1
UNIPROTKB|H0Y8G5 - symbol:HNRNPD "Heterogeneous nuclear r... 134 5.6e-07 1
UNIPROTKB|P19338 - symbol:NCL "Nucleolin" species:9606 "H... 124 6.2e-07 2
UNIPROTKB|Q4R4J7 - symbol:NCL "Nucleolin" species:9541 "M... 124 6.2e-07 2
UNIPROTKB|Q5RF26 - symbol:NCL "Nucleolin" species:9601 "P... 124 6.2e-07 2
UNIPROTKB|F1NCV5 - symbol:HNRPDL "Heterogeneous nuclear r... 136 6.3e-07 1
WB|WBGene00011059 - symbol:R06C1.4 species:6239 "Caenorha... 117 6.5e-07 1
UNIPROTKB|I3LRH2 - symbol:LOC100737210 "Uncharacterized p... 125 6.7e-07 2
ZFIN|ZDB-GENE-030131-185 - symbol:hnrnpab "heterogeneous ... 136 7.5e-07 1
UNIPROTKB|F1LRH1 - symbol:Msi1 "RNA-binding protein Musas... 135 8.0e-07 1
UNIPROTKB|E2RRF5 - symbol:RBM19 "Uncharacterized protein"... 141 8.1e-07 1
TAIR|locus:2160752 - symbol:AT5G06210 species:3702 "Arabi... 116 8.5e-07 1
UNIPROTKB|B4DTC3 - symbol:HNRNPD "cDNA FLJ54150, highly s... 134 8.6e-07 1
UNIPROTKB|G3V6A4 - symbol:Hnrpd "Protein Hnrpd" species:1... 134 8.7e-07 1
UNIPROTKB|A5D9H5 - symbol:HNRPD "Heterogeneous nuclear ri... 134 8.8e-07 1
MGI|MGI:97286 - symbol:Ncl "nucleolin" species:10090 "Mus... 139 9.4e-07 1
MGI|MGI:107376 - symbol:Msi1 "musashi RNA-binding protein... 135 9.8e-07 1
RGD|628778 - symbol:Msi1 "musashi RNA-binding protein 1" ... 135 9.8e-07 1
UNIPROTKB|Q8K3P4 - symbol:Msi1 "RNA-binding protein Musas... 135 9.8e-07 1
ASPGD|ASPL0000010999 - symbol:fabM species:162425 "Emeric... 94 1.0e-06 2
UNIPROTKB|G3V6A5 - symbol:Hnrpd "Heterogeneous nuclear ri... 134 1.1e-06 1
UNIPROTKB|F1Q0B0 - symbol:NCL "Uncharacterized protein" s... 124 1.1e-06 2
WB|WBGene00011156 - symbol:R09B3.3 species:6239 "Caenorha... 115 1.1e-06 1
UNIPROTKB|O45713 - symbol:R09B3.3 "Protein R09B3.3" speci... 115 1.1e-06 1
MGI|MGI:1355299 - symbol:Hnrpdl "heterogeneous nuclear ri... 133 1.1e-06 1
RGD|620365 - symbol:Hnrpd "heterogeneous nuclear ribonucl... 134 1.2e-06 1
UNIPROTKB|Q9JJ54 - symbol:Hnrnpd "Heterogeneous nuclear r... 134 1.2e-06 1
UNIPROTKB|A6H6Y0 - symbol:HNRNPD "Uncharacterized protein... 134 1.2e-06 1
UNIPROTKB|E2RIX2 - symbol:HNRNPD "Uncharacterized protein... 134 1.2e-06 1
UNIPROTKB|Q14103 - symbol:HNRNPD "Heterogeneous nuclear r... 134 1.2e-06 1
MGI|MGI:101947 - symbol:Hnrnpd "heterogeneous nuclear rib... 134 1.2e-06 1
UNIPROTKB|E2QRT0 - symbol:HNRPDL "Uncharacterized protein... 135 1.3e-06 1
WARNING: Descriptions of 243 database sequences were not reported due to the
limiting value of parameter V = 100.
>DICTYBASE|DDB_G0289941 [details] [associations]
symbol:DDB_G0289941 "Nucleolar protein 12"
species:44689 "Dictyostelium discoideum" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 dictyBase:DDB_G0289941 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AAFI02000149 eggNOG:COG0724
KO:K14837 RefSeq:XP_635997.1 ProteinModelPortal:Q54GS2
EnsemblProtists:DDB0188659 GeneID:8627412 KEGG:ddi:DDB_G0289941
InParanoid:Q54GS2 OMA:REIRIFP ProtClustDB:CLSZ2731818
Uniprot:Q54GS2
Length = 481
Score = 306 (112.8 bits), Expect = 5.5e-27, P = 5.5e-27
Identities = 66/150 (44%), Positives = 94/150 (62%)
Query: 48 NHALSS-VTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNL 106
NHA + + +FKP+G++E++RFRS+P++ I RK + HEKR NAY+ FK +
Sbjct: 267 NHAKDNELKQLFKPFGQIESIRFRSIPLSSIDGNRKETFIKKEFHEKRETCNAYIVFKQI 326
Query: 107 ESVEKAL-EMNG-HVIDEHTIRVDKA--LTTTKSNSHSIFIGNIPFXXXXXXLRKAFESC 162
+KA +MNG +H +RVD A T S++ +IFIGNIP+ L F+
Sbjct: 327 ADAKKAAKQMNGKEAFGKH-LRVDMADHKPTKASDAKTIFIGNIPYETEEEELFLIFDKT 385
Query: 163 -GEIDNVRLIRDQHTNIGKGFGYVNFKAEE 191
G++ +VR+IRD HTNIGKGFGYVNF +E
Sbjct: 386 FGDVVSVRIIRDSHTNIGKGFGYVNFSTDE 415
Score = 144 (55.7 bits), Expect = 1.3e-07, P = 1.3e-07
Identities = 29/58 (50%), Positives = 39/58 (67%)
Query: 183 GYVNFKAEEEELRKAFESC-GEIDNVRLIRDQHTNIGKGFGYVNFKVSFTTLSSIFSK 239
G + ++ EEEEL F+ G++ +VR+IRD HTNIGKGFGYVNF T ++I K
Sbjct: 367 GNIPYETEEEELFLIFDKTFGDVVSVRIIRDSHTNIGKGFGYVNFSTDETASTAIAQK 424
>ZFIN|ZDB-GENE-040718-77 [details] [associations]
symbol:rbm34 "RNA binding motif protein 34"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040718-77 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 KO:K14837 GeneTree:ENSGT00390000011249 CTD:23029
HOGENOM:HOG000060230 HOVERGEN:HBG052167 OMA:KEFGHIE EMBL:BX569779
EMBL:BC075875 IPI:IPI00494733 RefSeq:NP_001002382.1
UniGene:Dr.84194 STRING:Q6DHU2 Ensembl:ENSDART00000039490
GeneID:436655 KEGG:dre:436655 NextBio:20831100 Uniprot:Q6DHU2
Length = 411
Score = 296 (109.3 bits), Expect = 3.2e-26, P = 3.2e-26
Identities = 66/153 (43%), Positives = 92/153 (60%)
Query: 41 PSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAY 100
PS K K+ + S+FK G +E+VRFRSV D T+ RK KVH K+ N+NAY
Sbjct: 157 PSSCKKKD-----LLSVFKKSGVIESVRFRSVIREDPTMSRKVAAIQRKVHPKKQNINAY 211
Query: 101 VRFKNLESVEKALEMNGHVIDE-HTIRVDKALTTTK-SNSHSIFIGNIPFXXXXXXLRKA 158
+ FK ES AL+ NGH I IRVD+ +K + SIF+GN+P+ L+
Sbjct: 212 IVFKEEESATDALKWNGHEIQAGFYIRVDRVSQHSKHDHKRSIFVGNLPYDISELPLQNH 271
Query: 159 FESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEE 191
F+ CG I+ VRL+RD+ + +GKGFGYV F++ +
Sbjct: 272 FQECGNIEAVRLVRDRDSGMGKGFGYVLFESPD 304
Score = 108 (43.1 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
Identities = 20/45 (44%), Positives = 30/45 (66%)
Query: 183 GYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK 227
G + + E L+ F+ CG I+ VRL+RD+ + +GKGFGYV F+
Sbjct: 257 GNLPYDISELPLQNHFQECGNIEAVRLVRDRDSGMGKGFGYVLFE 301
Score = 56 (24.8 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
Identities = 13/40 (32%), Positives = 22/40 (55%)
Query: 140 SIFIGNIPFXXXXXXLRKAFESCGEIDNVR---LIRDQHT 176
++F+GN+P L F+ G I++VR +IR+ T
Sbjct: 150 TVFVGNLPSSCKKKDLLSVFKKSGVIESVRFRSVIREDPT 189
>UNIPROTKB|F1RGW8 [details] [associations]
symbol:RBM34 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005730 "nucleolus" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 KO:K14837
GeneTree:ENSGT00390000011249 CTD:23029 OMA:AEGHSKS EMBL:CU407042
RefSeq:XP_001925470.1 UniGene:Ssc.36566 ProteinModelPortal:F1RGW8
Ensembl:ENSSSCT00000011121 GeneID:100154004 KEGG:ssc:100154004
Uniprot:F1RGW8
Length = 424
Score = 292 (107.8 bits), Expect = 8.4e-26, P = 8.4e-26
Identities = 61/135 (45%), Positives = 86/135 (63%)
Query: 56 SMFKPYGEVETVRFRSVPVADITLPRK-ACIKMNKVHEKRTNMNAYVRFKNLESVEKALE 114
S FK YG++E+VRFRS+ A+ TL +K A IK K+H + N+NAYV FK+ + KALE
Sbjct: 199 SFFKEYGQIESVRFRSLIPAEGTLSKKLAAIK-RKIHPDQKNINAYVVFKDESAAAKALE 257
Query: 115 MNG-HVIDEHTIRVDKALTTTKSNSHSIFIGNIPFXXXXXXLRKAFESCGEIDNVRLIRD 173
NG + D IRVD A T+ + S+F+GN+P+ + K F CG + VR++RD
Sbjct: 258 RNGAQIADGFRIRVDLASETSSRDKRSVFVGNLPYKVEESAVEKHFLDCGSVVAVRIVRD 317
Query: 174 QHTNIGKGFGYVNFK 188
T +G+GFGYV F+
Sbjct: 318 PVTGVGRGFGYVLFE 332
Score = 110 (43.8 bits), Expect = 4.6e-07, Sum P(2) = 4.6e-07
Identities = 20/45 (44%), Positives = 29/45 (64%)
Query: 183 GYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK 227
G + +K EE + K F CG + VR++RD T +G+GFGYV F+
Sbjct: 288 GNLPYKVEESAVEKHFLDCGSVVAVRIVRDPVTGVGRGFGYVLFE 332
Score = 70 (29.7 bits), Expect = 4.6e-07, Sum P(2) = 4.6e-07
Identities = 22/81 (27%), Positives = 39/81 (48%)
Query: 89 KVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKSNSHSIFIGNIPF 148
K +KR N + V L+ V++ + V I+ +K K N ++F+GN+P
Sbjct: 138 KQGQKRKNSQSGVTIA-LDDVDQTV-----VNPRRKIQTNKEEERLK-NERTVFVGNLPV 190
Query: 149 XXXXXXLRKAFESCGEIDNVR 169
L+ F+ G+I++VR
Sbjct: 191 TCNKKKLKSFFKEYGQIESVR 211
>UNIPROTKB|P42696 [details] [associations]
symbol:RBM34 "RNA-binding protein 34" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL133418 eggNOG:COG0724 EMBL:D38491 EMBL:AK292362
EMBL:AL732292 EMBL:BC029451 IPI:IPI00181617 IPI:IPI00930357
RefSeq:NP_001155005.1 RefSeq:NP_055829.2 UniGene:Hs.535224
ProteinModelPortal:P42696 SMR:P42696 IntAct:P42696 STRING:P42696
PhosphoSite:P42696 DMDM:57013870 SWISS-2DPAGE:P42696 PaxDb:P42696
PRIDE:P42696 DNASU:23029 Ensembl:ENST00000366606
Ensembl:ENST00000408888 GeneID:23029 KEGG:hsa:23029 UCSC:uc001hwn.3
UCSC:uc010pxp.1 CTD:23029 GeneCards:GC01M235294 HGNC:HGNC:28965
HPA:HPA028606 neXtProt:NX_P42696 PharmGKB:PA142671094
HOGENOM:HOG000060230 HOVERGEN:HBG052167 InParanoid:P42696
OMA:AEGHSKS OrthoDB:EOG46DM2Z PhylomeDB:P42696 GenomeRNAi:23029
NextBio:44002 ArrayExpress:P42696 Bgee:P42696 CleanEx:HS_RBM34
Genevestigator:P42696 GermOnline:ENSG00000188739 Uniprot:P42696
Length = 430
Score = 292 (107.8 bits), Expect = 8.6e-26, P = 8.6e-26
Identities = 62/135 (45%), Positives = 86/135 (63%)
Query: 56 SMFKPYGEVETVRFRSVPVADITLPRK-ACIKMNKVHEKRTNMNAYVRFKNLESVEKALE 114
S FK YG++E+VRFRS+ A+ TL +K A IK K+H + N+NAYV FK + +AL+
Sbjct: 203 SFFKEYGQIESVRFRSLIPAEGTLSKKLAAIK-RKIHPDQKNINAYVVFKEESAATQALK 261
Query: 115 MNG-HVIDEHTIRVDKALTTTKSNSHSIFIGNIPFXXXXXXLRKAFESCGEIDNVRLIRD 173
NG + D IRVD A T+ + S+F+GN+P+ + K F CG I VR++RD
Sbjct: 262 RNGAQIADGFRIRVDLASETSSRDKRSVFVGNLPYKVEESAIEKHFLDCGSIMAVRIVRD 321
Query: 174 QHTNIGKGFGYVNFK 188
+ T IGKGFGYV F+
Sbjct: 322 KMTGIGKGFGYVLFE 336
Score = 119 (46.9 bits), Expect = 7.8e-08, Sum P(2) = 7.8e-08
Identities = 23/45 (51%), Positives = 30/45 (66%)
Query: 183 GYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK 227
G + +K EE + K F CG I VR++RD+ T IGKGFGYV F+
Sbjct: 292 GNLPYKVEESAIEKHFLDCGSIMAVRIVRDKMTGIGKGFGYVLFE 336
Score = 67 (28.6 bits), Expect = 7.8e-08, Sum P(2) = 7.8e-08
Identities = 19/82 (23%), Positives = 41/82 (50%)
Query: 89 KVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHT-IRVDKALTTTKSNSHSIFIGNIP 147
K +KR N V+ + + ++ + V+ + I++++ K N ++F+GN+P
Sbjct: 138 KQGQKRKNSQPGVKVADRKILD---DTEDTVVSQRKKIQINQEEERLK-NERTVFVGNLP 193
Query: 148 FXXXXXXLRKAFESCGEIDNVR 169
L+ F+ G+I++VR
Sbjct: 194 VTCNKKKLKSFFKEYGQIESVR 215
>UNIPROTKB|J9NU83 [details] [associations]
symbol:RBM34 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00390000011249 EMBL:AAEX03002684
Ensembl:ENSCAFT00000043962 Uniprot:J9NU83
Length = 344
Score = 276 (102.2 bits), Expect = 4.2e-24, P = 4.2e-24
Identities = 58/135 (42%), Positives = 86/135 (63%)
Query: 56 SMFKPYGEVETVRFRSVPVADITLPRK-ACIKMNKVHEKRTNMNAYVRFKNLESVEKALE 114
S F+ YG++++VRFRS+ A+ TL +K A IK K+H + +NAYV FK+ S KAL+
Sbjct: 200 SFFREYGQIDSVRFRSLIPAEGTLSKKLAAIK-RKIHPDQKYINAYVVFKDESSATKALK 258
Query: 115 MNG-HVIDEHTIRVDKALTTTKSNSHSIFIGNIPFXXXXXXLRKAFESCGEIDNVRLIRD 173
NG + D IRVD A T+ + S+F+GN+P+ + + F CG I VR++RD
Sbjct: 259 RNGAQIADGFRIRVDLASETSSRDKRSVFVGNLPYKVEESAVEEHFLDCGSIVAVRIVRD 318
Query: 174 QHTNIGKGFGYVNFK 188
+ T +G+GFGYV F+
Sbjct: 319 RVTGVGRGFGYVLFE 333
Score = 109 (43.4 bits), Expect = 2.3e-08, Sum P(2) = 2.3e-08
Identities = 20/45 (44%), Positives = 30/45 (66%)
Query: 183 GYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK 227
G + +K EE + + F CG I VR++RD+ T +G+GFGYV F+
Sbjct: 289 GNLPYKVEESAVEEHFLDCGSIVAVRIVRDRVTGVGRGFGYVLFE 333
Score = 81 (33.6 bits), Expect = 2.3e-08, Sum P(2) = 2.3e-08
Identities = 21/82 (25%), Positives = 42/82 (51%)
Query: 89 KVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHT-IRVDKALTTTKSNSHSIFIGNIP 147
K +KR N + + + +K L+++ V+++ I +++ K N ++F+GN+P
Sbjct: 136 KQEQKRNNFQSGINVAD----KKVLDVDHIVLNQRKKIEINQEEEKLK-NERTVFVGNLP 190
Query: 148 FXXXXXXLRKAFESCGEIDNVR 169
L+ F G+ID+VR
Sbjct: 191 VTCNKKKLKSFFREYGQIDSVR 212
>MGI|MGI:1098653 [details] [associations]
symbol:Rbm34 "RNA binding motif protein 34" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:1098653 GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 KO:K14837 CTD:23029 HOVERGEN:HBG052167
OrthoDB:EOG46DM2Z EMBL:AK078099 IPI:IPI00225915 RefSeq:NP_766350.2
UniGene:Mm.28199 ProteinModelPortal:Q8C5L7 SMR:Q8C5L7
PhosphoSite:Q8C5L7 PRIDE:Q8C5L7 GeneID:52202 KEGG:mmu:52202
InParanoid:Q8C5L7 NextBio:308648 Bgee:Q8C5L7 CleanEx:MM_RBM34
Genevestigator:Q8C5L7 GermOnline:ENSMUSG00000033931 Uniprot:Q8C5L7
Length = 375
Score = 276 (102.2 bits), Expect = 4.2e-24, P = 4.2e-24
Identities = 62/135 (45%), Positives = 84/135 (62%)
Query: 56 SMFKPYGEVETVRFRSVPVADITLPRK-ACIKMNKVHEKRTNMNAYVRFKNLESVEKALE 114
S FK YG+VE+VRFRSV A+ TL +K A IK K H + ++NAYV FK+ + KAL+
Sbjct: 207 SFFKEYGQVESVRFRSVMPAEGTLTKKLAAIK-RKFHPDQKSINAYVVFKDESAAAKALQ 265
Query: 115 MNGHVIDE-HTIRVDKALTTTKSNSHSIFIGNIPFXXXXXXLRKAFESCGEIDNVRLIRD 173
NG I E IRVD A T + S+F+GN+P+ L + F CG I VR++R+
Sbjct: 266 RNGAQIAEGFRIRVDLASETASRDKRSVFVGNLPYKIEDSALEEHFLDCGSIVAVRIVRN 325
Query: 174 QHTNIGKGFGYVNFK 188
T +G+GFGYV F+
Sbjct: 326 PLTGVGRGFGYVLFE 340
Score = 101 (40.6 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 19/45 (42%), Positives = 29/45 (64%)
Query: 183 GYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK 227
G + +K E+ L + F CG I VR++R+ T +G+GFGYV F+
Sbjct: 296 GNLPYKIEDSALEEHFLDCGSIVAVRIVRNPLTGVGRGFGYVLFE 340
Score = 65 (27.9 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 10/33 (30%), Positives = 20/33 (60%)
Query: 137 NSHSIFIGNIPFXXXXXXLRKAFESCGEIDNVR 169
N ++F+GN+P L+ F+ G++++VR
Sbjct: 187 NERTVFVGNLPVTCNKKKLKSFFKEYGQVESVR 219
>UNIPROTKB|E2R3E1 [details] [associations]
symbol:RBM34 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005730 "nucleolus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00390000011249 OMA:AEGHSKS EMBL:AAEX03002684
Ensembl:ENSCAFT00000018260 Uniprot:E2R3E1
Length = 429
Score = 276 (102.2 bits), Expect = 6.8e-24, P = 6.8e-24
Identities = 58/135 (42%), Positives = 86/135 (63%)
Query: 56 SMFKPYGEVETVRFRSVPVADITLPRK-ACIKMNKVHEKRTNMNAYVRFKNLESVEKALE 114
S F+ YG++++VRFRS+ A+ TL +K A IK K+H + +NAYV FK+ S KAL+
Sbjct: 203 SFFREYGQIDSVRFRSLIPAEGTLSKKLAAIK-RKIHPDQKYINAYVVFKDESSATKALK 261
Query: 115 MNG-HVIDEHTIRVDKALTTTKSNSHSIFIGNIPFXXXXXXLRKAFESCGEIDNVRLIRD 173
NG + D IRVD A T+ + S+F+GN+P+ + + F CG I VR++RD
Sbjct: 262 RNGAQIADGFRIRVDLASETSSRDKRSVFVGNLPYKVEESAVEEHFLDCGSIVAVRIVRD 321
Query: 174 QHTNIGKGFGYVNFK 188
+ T +G+GFGYV F+
Sbjct: 322 RVTGVGRGFGYVLFE 336
Score = 109 (43.4 bits), Expect = 4.7e-08, Sum P(2) = 4.7e-08
Identities = 20/45 (44%), Positives = 30/45 (66%)
Query: 183 GYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK 227
G + +K EE + + F CG I VR++RD+ T +G+GFGYV F+
Sbjct: 292 GNLPYKVEESAVEEHFLDCGSIVAVRIVRDRVTGVGRGFGYVLFE 336
Score = 81 (33.6 bits), Expect = 4.7e-08, Sum P(2) = 4.7e-08
Identities = 21/82 (25%), Positives = 42/82 (51%)
Query: 89 KVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHT-IRVDKALTTTKSNSHSIFIGNIP 147
K +KR N + + + +K L+++ V+++ I +++ K N ++F+GN+P
Sbjct: 139 KQEQKRNNFQSGINVAD----KKVLDVDHIVLNQRKKIEINQEEEKLK-NERTVFVGNLP 193
Query: 148 FXXXXXXLRKAFESCGEIDNVR 169
L+ F G+ID+VR
Sbjct: 194 VTCNKKKLKSFFREYGQIDSVR 215
>RGD|1310161 [details] [associations]
symbol:Rbm34 "RNA binding motif protein 34" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005730 "nucleolus" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1310161 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724 KO:K14837
GeneTree:ENSGT00390000011249 CTD:23029 HOGENOM:HOG000060230
HOVERGEN:HBG052167 OrthoDB:EOG46DM2Z EMBL:BC087155 IPI:IPI00359899
RefSeq:NP_001014037.1 UniGene:Rn.93968 ProteinModelPortal:Q5M9F1
PhosphoSite:Q5M9F1 PRIDE:Q5M9F1 Ensembl:ENSRNOT00000027145
GeneID:307956 KEGG:rno:307956 UCSC:RGD:1310161 InParanoid:Q5M9F1
OMA:KKLAAIX NextBio:658166 Genevestigator:Q5M9F1
GermOnline:ENSRNOG00000020004 Uniprot:Q5M9F1
Length = 428
Score = 275 (101.9 bits), Expect = 8.8e-24, P = 8.8e-24
Identities = 62/135 (45%), Positives = 83/135 (61%)
Query: 56 SMFKPYGEVETVRFRSVPVADITLPRK-ACIKMNKVHEKRTNMNAYVRFKNLESVEKALE 114
S FK YG+VE+VRFRSV A+ TL +K A IK K H + ++NAYV FK + KAL+
Sbjct: 201 SFFKEYGQVESVRFRSVMPAEGTLSKKLAAIK-RKFHPDQKSINAYVVFKEERAAAKALQ 259
Query: 115 MNGHVIDE-HTIRVDKALTTTKSNSHSIFIGNIPFXXXXXXLRKAFESCGEIDNVRLIRD 173
NG I E IRVD A T + S+F+GN+P+ L + F CG I VR++R+
Sbjct: 260 RNGAQIAEGFRIRVDLASETASRDKRSVFVGNLPYRVDESALEEHFLDCGSIVAVRIVRN 319
Query: 174 QHTNIGKGFGYVNFK 188
T +G+GFGYV F+
Sbjct: 320 PLTGVGRGFGYVLFE 334
Score = 99 (39.9 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 18/45 (40%), Positives = 29/45 (64%)
Query: 183 GYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK 227
G + ++ +E L + F CG I VR++R+ T +G+GFGYV F+
Sbjct: 290 GNLPYRVDESALEEHFLDCGSIVAVRIVRNPLTGVGRGFGYVLFE 334
Score = 67 (28.6 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 15/63 (23%), Positives = 32/63 (50%)
Query: 107 ESVEKALEMNGHVIDEHTIRVDKALTTTKSNSHSIFIGNIPFXXXXXXLRKAFESCGEID 166
E+++ AL +N + ++ K N ++F+GN+P L+ F+ G+++
Sbjct: 152 EALDVALSLNEDGRQRTKVPLNPEEERLK-NERTVFVGNLPVTCNKKKLKSFFKEYGQVE 210
Query: 167 NVR 169
+VR
Sbjct: 211 SVR 213
>SGD|S000005401 [details] [associations]
symbol:NOP12 "Protein involved in pre-rRNA processing and
ribosomal biogenesis" species:4932 "Saccharomyces cerevisiae"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA;IDA] [GO:0003723 "RNA binding"
evidence=IEA;ISS] [GO:0030684 "preribosome" evidence=IDA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000463 "maturation of LSU-rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP]
[GO:0042254 "ribosome biogenesis" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SGD:S000005401 GO:GO:0005730 EMBL:BK006948 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0000463 eggNOG:COG0724
GO:GO:0030684 KO:K14837 HOGENOM:HOG000157415 OMA:SIRYRSI
OrthoDB:EOG4JHGQR EMBL:Z74783 PIR:S66726 RefSeq:NP_014601.1
ProteinModelPortal:Q08208 SMR:Q08208 DIP:DIP-6505N IntAct:Q08208
MINT:MINT-669520 STRING:Q08208 PaxDb:Q08208 PeptideAtlas:Q08208
EnsemblFungi:YOL041C GeneID:854116 KEGG:sce:YOL041C CYGD:YOL041c
GeneTree:ENSGT00390000011249 NextBio:975813 Genevestigator:Q08208
GermOnline:YOL041C Uniprot:Q08208
Length = 459
Score = 269 (99.8 bits), Expect = 6.5e-23, P = 6.5e-23
Identities = 67/185 (36%), Positives = 97/185 (52%)
Query: 19 NLMSKLKVFLNIWKMALKL-KMNP-SLTKSKNHALSSVTSMFKPYGE--VETVRFRSVPV 74
N++S + ++K KL NP + T+ + +S E +E++RFRS+
Sbjct: 154 NILSTVITSKKVYKEFKKLFGTNPIAETEESGNEKEEESSKKSDNNEFAIESIRFRSISF 213
Query: 75 ADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALE-MNGHVIDEHTIRVDK-ALT 132
D LPRK K H+ R +NAY+ +KN +V K +N V +H +RVD A
Sbjct: 214 -DEALPRKVAFVQQKFHKSRDTINAYIVYKNKSAVRKICSNLNAVVFQDHHLRVDSVAHP 272
Query: 133 TTKSNSHSIFIGNIPFXXXXXXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEE 192
SIF+GN+ F L K FE CG+I+ VR+IRD TN+GKGF YV FK + +
Sbjct: 273 APHDKKRSIFVGNLDFEEIEESLWKHFEPCGDIEYVRIIRDSKTNMGKGFAYVQFK-DLQ 331
Query: 193 ELRKA 197
+ KA
Sbjct: 332 SVNKA 336
Score = 136 (52.9 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 26/45 (57%), Positives = 33/45 (73%)
Query: 183 GYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK 227
G ++F+ EE L K FE CG+I+ VR+IRD TN+GKGF YV FK
Sbjct: 284 GNLDFEEIEESLWKHFEPCGDIEYVRIIRDSKTNMGKGFAYVQFK 328
>UNIPROTKB|F1NIM5 [details] [associations]
symbol:RBM34 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00390000011249
OMA:AEGHSKS EMBL:AADN02051930 IPI:IPI00589396
Ensembl:ENSGALT00000023153 Uniprot:F1NIM5
Length = 392
Score = 258 (95.9 bits), Expect = 4.3e-22, P = 4.3e-22
Identities = 59/138 (42%), Positives = 83/138 (60%)
Query: 56 SMFKPYGEVETVRFRSVPVADITLPRK-ACIKMNKVHEKRTNMNAYVRFKNLESVEKAL- 113
S+FK YG++E++RFRSV A+ TL RK A IK K+H +NAYV FK KAL
Sbjct: 165 SLFKEYGQIESIRFRSVVPAEDTLSRKLAAIK-RKIHPNVKYINAYVVFKEERDAVKALN 223
Query: 114 -EMNG-HVIDEHTIRVDKALTTT-KSNSHSIFIGNIPFXXXXXXLRKAFESCGEIDNVRL 170
+ NG V IRVD A + N S+F+GN+ + +R+ F CG++ VR+
Sbjct: 224 YKRNGTEVASGFHIRVDSASKNSLHDNKRSVFLGNLAYDISDSAVREHFADCGDVVAVRI 283
Query: 171 IRDQHTNIGKGFGYVNFK 188
+RD+ + +GKGFGYV F+
Sbjct: 284 VRDRQSGMGKGFGYVLFE 301
Score = 104 (41.7 bits), Expect = 3.9e-06, Sum P(2) = 3.9e-06
Identities = 20/54 (37%), Positives = 33/54 (61%)
Query: 175 HTNIGKGF-GYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK 227
H N F G + + + +R+ F CG++ VR++RD+ + +GKGFGYV F+
Sbjct: 248 HDNKRSVFLGNLAYDISDSAVREHFADCGDVVAVRIVRDRQSGMGKGFGYVLFE 301
Score = 67 (28.6 bits), Expect = 3.9e-06, Sum P(2) = 3.9e-06
Identities = 10/33 (30%), Positives = 20/33 (60%)
Query: 137 NSHSIFIGNIPFXXXXXXLRKAFESCGEIDNVR 169
N ++F+GN+P L+ F+ G+I+++R
Sbjct: 145 NKRTVFVGNLPVDCTAQMLKSLFKEYGQIESIR 177
>POMBASE|SPAC16E8.06c [details] [associations]
symbol:nop12 "RNA-binding protein Nop12 (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0003723 "RNA binding"
evidence=ISM] [GO:0005730 "nucleolus" evidence=ISO;IDA] [GO:0006364
"rRNA processing" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
PomBase:SPAC16E8.06c EMBL:CU329670 GO:GO:0005730
GenomeReviews:CU329670_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0006364 eggNOG:COG0724 KO:K14837
HOGENOM:HOG000157415 OMA:SIRYRSI OrthoDB:EOG4JHGQR PIR:T37786
RefSeq:NP_594218.1 ProteinModelPortal:O13741 STRING:O13741
EnsemblFungi:SPAC16E8.06c.1 GeneID:2542314 KEGG:spo:SPAC16E8.06c
NextBio:20803375 Uniprot:O13741
Length = 438
Score = 256 (95.2 bits), Expect = 1.5e-21, P = 1.5e-21
Identities = 49/136 (36%), Positives = 77/136 (56%)
Query: 54 VTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKAL 113
+T F+ +G V+++RFRS+ ++ +PRK K H +R +NAY+ F++ S AL
Sbjct: 185 LTKHFRQFGAVDSIRFRSLAFSE-AIPRKVAFFEKKFHSERDTVNAYIVFRDSSSARSAL 243
Query: 114 EMNGHVIDEHTIRVDKAL-TTTKSNSHSIFIGNIPFXXXXXXLRKAFESCGEIDNVRLIR 172
+NG + + +RVD + +F+GN+ F L + F CG ID VR++R
Sbjct: 244 SLNGTMFMDRHLRVDSVSHPMPQDTKRCVFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVR 303
Query: 173 DQHTNIGKGFGYVNFK 188
D TN+GKGF Y+ FK
Sbjct: 304 DPKTNLGKGFAYIQFK 319
Score = 138 (53.6 bits), Expect = 5.9e-07, P = 5.9e-07
Identities = 29/63 (46%), Positives = 38/63 (60%)
Query: 165 IDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYV 224
+D+V Q T G + F+AEEE L + F CG ID VR++RD TN+GKGF Y+
Sbjct: 257 VDSVSHPMPQDTKRCVFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYI 316
Query: 225 NFK 227
FK
Sbjct: 317 QFK 319
>WB|WBGene00008688 [details] [associations]
symbol:F11A10.7 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0006898 "receptor-mediated
endocytosis" evidence=IMP] [GO:0002009 "morphogenesis of an
epithelium" evidence=IMP] [GO:0040011 "locomotion" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0040035 "hermaphrodite
genitalia development" evidence=IMP] [GO:0071688 "striated muscle
myosin thick filament assembly" evidence=IMP] [GO:0007281 "germ
cell development" evidence=IMP] [GO:0018991 "oviposition"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009792 GO:GO:0002009
GO:GO:0006898 GO:GO:0040007 GO:GO:0018991 GO:GO:0002119
GO:GO:0000166 GO:GO:0071688 Gene3D:3.30.70.330 GO:GO:0040011
GO:GO:0003676 GO:GO:0040035 GO:GO:0007281 HSSP:P19339
eggNOG:COG0724 EMBL:Z68297 KO:K14837 GeneTree:ENSGT00390000011249
RefSeq:NP_502291.1 ProteinModelPortal:Q95QL3 SMR:Q95QL3
STRING:Q95QL3 PaxDb:Q95QL3 EnsemblMetazoa:F11A10.7 GeneID:178148
KEGG:cel:CELE_F11A10.7 UCSC:F11A10.7 CTD:178148 WormBase:F11A10.7
HOGENOM:HOG000017901 InParanoid:Q95QL3 OMA:KEFGHIE NextBio:899918
Uniprot:Q95QL3
Length = 394
Score = 248 (92.4 bits), Expect = 6.6e-21, P = 6.6e-21
Identities = 53/141 (37%), Positives = 85/141 (60%)
Query: 53 SVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKA 112
SV +F +G + +VR R++ A+ L ++ K+++K++++ YV+F ESVEKA
Sbjct: 158 SVRRIFSDFGTISSVRMRNLLPANEKLTKRVTHLTGKLNDKQSSLTFYVKFGAEESVEKA 217
Query: 113 LEMNGHVIDEHTIRVDKALTTTKS--NSHSIFIGNIPFXXXXXXLRKAFES-CGEIDNVR 169
L+ NG +D+H IRVDK + K +IF+GN+PF L F + G ++ VR
Sbjct: 218 LKYNGTKLDDHVIRVDKVGSKKKEFGKDMAIFVGNLPFEITEDALITFFSAQIGPVEAVR 277
Query: 170 LIRDQHTNIGKGFGYVNFKAE 190
++RD+ T GKGF +VNFK +
Sbjct: 278 IVRDKDTGKGKGFAFVNFKQD 298
Score = 91 (37.1 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
Identities = 19/46 (41%), Positives = 29/46 (63%)
Query: 183 GYVNFKAEEEELRKAFES-CGEIDNVRLIRDQHTNIGKGFGYVNFK 227
G + F+ E+ L F + G ++ VR++RD+ T GKGF +VNFK
Sbjct: 251 GNLPFEITEDALITFFSAQIGPVEAVRIVRDKDTGKGKGFAFVNFK 296
Score = 75 (31.5 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
Identities = 13/50 (26%), Positives = 26/50 (52%)
Query: 121 DEHTIRVDKALTTTKSNSHSIFIGNIPFXXXXXXLRKAFESCGEIDNVRL 170
+ T++ A + N+ ++F+GN+P +R+ F G I +VR+
Sbjct: 125 ENRTLQKSNARASAAENALTVFVGNMPLTMNEKSVRRIFSDFGTISSVRM 174
>CGD|CAL0002615 [details] [associations]
symbol:orf19.809 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0030684 "preribosome" evidence=IEA]
[GO:0000463 "maturation of LSU-rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 CGD:CAL0002615 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006364 eggNOG:COG0724
EMBL:AACQ01000019 EMBL:AACQ01000018 RefSeq:XP_720933.1
RefSeq:XP_721055.1 ProteinModelPortal:Q5AHI7 STRING:Q5AHI7
GeneID:3637230 GeneID:3637377 KEGG:cal:CaO19.809
KEGG:cal:CaO19.8429 KO:K14837 Uniprot:Q5AHI7
Length = 454
Score = 247 (92.0 bits), Expect = 1.8e-20, P = 1.8e-20
Identities = 51/136 (37%), Positives = 80/136 (58%)
Query: 56 SMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALEM 115
++FK YG+++++R+RS+ D LPRK +H+ R ++NAY+ +K + A E+
Sbjct: 182 NLFKHYGKIDSIRYRSISF-DEHLPRKVAFAKKNLHKSRDSVNAYIVYKEKPASIAAKEL 240
Query: 116 NGHVIDEHTIRVDKAL-TTTKSNSHSIFIGNIPFXXXXXXLRKAFESC--GEIDNVRLIR 172
N V ++H +RVD K N +IF+GN+ F L K F S ++++VR+IR
Sbjct: 241 NATVFEDHHLRVDHVSHPAPKDNKRTIFVGNLDFEEKEETLWKYFNSKLDQDVESVRIIR 300
Query: 173 DQHTNIGKGFGYVNFK 188
D TN+GKGF V FK
Sbjct: 301 DSKTNLGKGFALVQFK 316
>UNIPROTKB|A2A2V2 [details] [associations]
symbol:RBM34 "RNA-binding protein 34" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AL133418 EMBL:AL732292 UniGene:Hs.535224
HGNC:HGNC:28965 HOGENOM:HOG000060230 HOVERGEN:HBG052167
IPI:IPI00930315 SMR:A2A2V2 STRING:A2A2V2 Ensembl:ENST00000447801
Uniprot:A2A2V2
Length = 408
Score = 237 (88.5 bits), Expect = 1.5e-19, P = 1.5e-19
Identities = 52/121 (42%), Positives = 74/121 (61%)
Query: 70 RSVPVADITLPRK-ACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNG-HVIDEHTIRV 127
+ +P A+ TL +K A IK K+H + N+NAYV FK + +AL+ NG + D IRV
Sbjct: 196 KKIP-AEGTLSKKLAAIK-RKIHPDQKNINAYVVFKEESAATQALKRNGAQIADGFRIRV 253
Query: 128 DKALTTTKSNSHSIFIGNIPFXXXXXXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 187
D A T+ + S+F+GN+P+ + K F CG I VR++RD+ T IGKGFGYV F
Sbjct: 254 DLASETSSRDKRSVFVGNLPYKVEESAIEKHFLDCGSIMAVRIVRDKMTGIGKGFGYVLF 313
Query: 188 K 188
+
Sbjct: 314 E 314
Score = 119 (46.9 bits), Expect = 3.1e-05, Sum P(2) = 3.1e-05
Identities = 23/45 (51%), Positives = 30/45 (66%)
Query: 183 GYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK 227
G + +K EE + K F CG I VR++RD+ T IGKGFGYV F+
Sbjct: 270 GNLPYKVEESAIEKHFLDCGSIMAVRIVRDKMTGIGKGFGYVLFE 314
Score = 41 (19.5 bits), Expect = 3.1e-05, Sum P(2) = 3.1e-05
Identities = 13/60 (21%), Positives = 30/60 (50%)
Query: 89 KVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHT-IRVDKALTTTKSNSHSIFIGNIP 147
K +KR N V+ + + ++ + V+ + I++++ K N ++F+GN+P
Sbjct: 136 KQGQKRKNSQPGVKVADRKILD---DTEDTVVSQRKKIQINQEEERLK-NERTVFVGNLP 191
>TAIR|locus:2172937 [details] [associations]
symbol:AT5G46840 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA;ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISM] [GO:0006312
"mitotic recombination" evidence=RCA] [GO:0009560 "embryo sac egg
cell differentiation" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 EMBL:CP002688
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AB022221
KO:K14837 OMA:AEGHSKS EMBL:BT009688 EMBL:AK228177 IPI:IPI00521492
RefSeq:NP_199496.1 UniGene:At.29928 ProteinModelPortal:Q9LUK6
SMR:Q9LUK6 IntAct:Q9LUK6 PRIDE:Q9LUK6 EnsemblPlants:AT5G46840.1
GeneID:834728 KEGG:ath:AT5G46840 TAIR:At5g46840 InParanoid:Q9LUK6
PhylomeDB:Q9LUK6 ProtClustDB:CLSN2686334 Genevestigator:Q9LUK6
Uniprot:Q9LUK6
Length = 501
Score = 235 (87.8 bits), Expect = 5.0e-19, P = 5.0e-19
Identities = 55/149 (36%), Positives = 84/149 (56%)
Query: 58 FKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNG 117
F +GEVE+VR RSVP+ D RK I + +++EK ++++AYV F+ +S +L N
Sbjct: 191 FSKFGEVESVRIRSVPIVDSKRTRKGAIMLKQINEKASSVHAYVVFETEQSAAASLAHNM 250
Query: 118 HVIDEHTIRVDKALTTTKS-----NSH------SIFIGNIPFXXXXXXLRKAFESCGEID 166
+ID + +RVD+A K ++H ++F+GN+PF + + F ++
Sbjct: 251 SLIDGNHVRVDRACPPRKKQKGHDDTHLYDPKRTVFMGNLPFDVKDEEVYQLFTGKSNLE 310
Query: 167 N----VRLIRDQHTNIGKGFGYVNFKAEE 191
N VR+IRD H NIGKG YV FK E
Sbjct: 311 NSIEAVRVIRDPHLNIGKGIAYVLFKTRE 339
>ASPGD|ASPL0000048939 [details] [associations]
symbol:AN1452 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005730
"nucleolus" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005730 GO:GO:0000166 EMBL:BN001307
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006364 eggNOG:COG0724
EMBL:AACD01000022 KO:K14837 RefSeq:XP_659056.1
ProteinModelPortal:Q5BDC8 STRING:Q5BDC8
EnsemblFungi:CADANIAT00008065 GeneID:2875093 KEGG:ani:AN1452.2
HOGENOM:HOG000157415 OMA:SIRYRSI OrthoDB:EOG4JHGQR Uniprot:Q5BDC8
Length = 520
Score = 178 (67.7 bits), Expect = 8.4e-13, P = 8.4e-13
Identities = 56/211 (26%), Positives = 101/211 (47%)
Query: 22 SKLKVFL-NIWKMALKLKM-NPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADI-T 78
S VFL N+ A+ K L K + LS++ P+ +++++RFRS A
Sbjct: 189 SNRTVFLGNVSTKAITSKSAKKELMKHLSSFLSTLPESTGPH-KIDSIRFRSTAFASGGK 247
Query: 79 LPRKACIKMNKVHEKRT-NMNAYVRFKNLESVEKA-LEMNGHVIDEHTIRVDKALTTTK- 135
+P++A ++H+ T + NAY + ++ +KA +NG V+ + +RVD K
Sbjct: 248 IPKRAAFAKQEIHDDTTPSTNAYAVYSTAQAAKKAPAALNGTVVLDRHLRVDNVAHPAKV 307
Query: 136 SNSHSIFIGNIPFXXXXXXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELR 195
+ +F+GN+ F + GE + R ++ +G + F A + +
Sbjct: 308 DHKRCVFVGNLDFIDNETGTEE-----GE--KKKKNRPP-ADVEEGL-WRTFNAHTKASQ 358
Query: 196 KAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 226
G +++VR++RD+ T +GKGF YV F
Sbjct: 359 SGPAGRGNVESVRVVRDRSTRVGKGFAYVQF 389
>UNIPROTKB|Q1JQ73 [details] [associations]
symbol:elavl1-a "ELAV-like protein 1-A" species:8355
"Xenopus laevis" [GO:0003730 "mRNA 3'-UTR binding" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005938
"cell cortex" evidence=IDA] [GO:0007369 "gastrulation"
evidence=IMP] [GO:0008266 "poly(U) RNA binding" evidence=IDA]
[GO:0008298 "intracellular mRNA localization" evidence=IMP]
[GO:0030529 "ribonucleoprotein complex" evidence=IDA;IPI]
[GO:0031440 "regulation of mRNA 3'-end processing" evidence=IC]
[GO:0048255 "mRNA stabilization" evidence=IC;IGI] [GO:0051259
"protein oligomerization" evidence=IDA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0005938 GO:GO:0005634 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0030529
GO:GO:0008298 GO:GO:0007369 HOVERGEN:HBG002295 TIGRFAMs:TIGR01661
KO:K13208 EMBL:U17596 EMBL:BC116459 PIR:I51675
RefSeq:NP_001084078.1 UniGene:Xl.49136 ProteinModelPortal:Q1JQ73
SMR:Q1JQ73 MINT:MINT-274235 PRIDE:Q1JQ73 GeneID:399292
KEGG:xla:399292 CTD:399292 Xenbase:XB-GENE-6254178 GO:GO:0031440
Uniprot:Q1JQ73
Length = 337
Score = 122 (48.0 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 39/156 (25%), Positives = 73/156 (46%)
Query: 47 KNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNL 106
+N + S+F GEVE+ + VA + R + ++K H +V + N
Sbjct: 29 QNMTQDELRSLFSSIGEVESAKLIRDKVAGFEM-RSS--SLSKGHSLGYG---FVNYLNA 82
Query: 107 ESVEKALE-MNGHVIDEHTIRVDKALTTTKS-NSHSIFIGNIPFXXXXXXLRKAFESCGE 164
+ E+A+ +NG + TI+V A +++S +++I +P + F G
Sbjct: 83 KDAERAINTLNGLRLQSKTIKVSFARPSSESIKDANLYISGLPRTMTQKDVEDMFLPFGH 142
Query: 165 IDNVRLIRDQHTNIGKGFGYVNF--KAEEEELRKAF 198
I N R++ DQ T + +G ++ F ++E EE +F
Sbjct: 143 IINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASF 178
Score = 78 (32.5 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 19/51 (37%), Positives = 32/51 (62%)
Query: 189 AEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYV---NFKVSFTTLSSI 236
A+E L + F G + NV++IRD +TN KGFG+V N++ + ++S+
Sbjct: 266 ADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 316
>UNIPROTKB|Q7ZYE9 [details] [associations]
symbol:hnrnpab "Hnrpab-prov protein" species:8355 "Xenopus
laevis" [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOVERGEN:HBG002295 HSSP:Q14103 KO:K13044 InterPro:IPR012956
Pfam:PF08143 CTD:3182 EMBL:BC043814 RefSeq:NP_001080489.1
UniGene:Xl.45404 ProteinModelPortal:Q7ZYE9 SMR:Q7ZYE9 IntAct:Q7ZYE9
GeneID:380181 KEGG:xla:380181 Xenbase:XB-GENE-6043063
Uniprot:Q7ZYE9
Length = 324
Score = 157 (60.3 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 39/115 (33%), Positives = 61/115 (53%)
Query: 85 IKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKSNSHSIFIG 144
IKM+ + R+ ++ FK+ ESV+K LE H +D I KA+ K IF+G
Sbjct: 95 IKMDP-NTGRSRGFGFILFKDAESVDKVLEHKEHRLDGRLIDPKKAMAMKKDPIKKIFVG 153
Query: 145 NIPFXXXXXXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
+ +R+ FE+ GEI+ + L D TN +GF ++ FK EE+ ++K E
Sbjct: 154 GLNPEAGEDQIREYFETFGEIEAIELPMDPKTNKRRGFVFITFK-EEDPVKKILE 207
>DICTYBASE|DDB_G0290307 [details] [associations]
symbol:DDB_G0290307 "ELAVL1-like protein"
species:44689 "Dictyostelium discoideum" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0290307 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AAFI02000162 eggNOG:NOG256997 RefSeq:XP_635793.1
ProteinModelPortal:Q54G90 EnsemblProtists:DDB0233651 GeneID:8627598
KEGG:ddi:DDB_G0290307 InParanoid:Q54G90 OMA:SATNQCK Uniprot:Q54G90
Length = 459
Score = 115 (45.5 bits), Expect = 2.6e-09, Sum P(2) = 2.6e-09
Identities = 25/68 (36%), Positives = 39/68 (57%)
Query: 124 TIRVDKALTTTKSNSHS---IFIGNIPFXXXXXXLRKAFESCGEIDNVRLIRDQHTNIGK 180
T + + T+T SNS + +FI +P LR F + GEID+ R++ D +T + +
Sbjct: 81 TTTMTQTSTSTSSNSANSGNLFISFLPATYTSDTLRSIFSAFGEIDSCRVMVDLNTGLSR 140
Query: 181 GFGYVNFK 188
GFG+V FK
Sbjct: 141 GFGFVKFK 148
Score = 87 (35.7 bits), Expect = 2.6e-09, Sum P(2) = 2.6e-09
Identities = 17/51 (33%), Positives = 33/51 (64%)
Query: 189 AEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYV---NFKVSFTTLSSI 236
A++ L + F CG I +V+++RDQ T + +G+G+V + S++ ++SI
Sbjct: 393 ADDSLLYRLFSPCGAIASVKIVRDQTTQVCRGYGFVRMVSLADSYSAINSI 443
>UNIPROTKB|F1NIB4 [details] [associations]
symbol:HNRNPAB "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104347 EMBL:AADN02028501 EMBL:AADN02028502
EMBL:AADN02028503 IPI:IPI00603451 ProteinModelPortal:F1NIB4
Ensembl:ENSGALT00000023233 ArrayExpress:F1NIB4 Uniprot:F1NIB4
Length = 212
Score = 146 (56.5 bits), Expect = 3.7e-09, P = 3.7e-09
Identities = 38/115 (33%), Positives = 57/115 (49%)
Query: 85 IKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKSNSHSIFIG 144
IKM+ + R+ ++ FK SVEK LE H +D I KA+ K IF+G
Sbjct: 31 IKMDP-NTGRSRGFGFILFKEPGSVEKVLEQKEHRLDGRLIDPKKAMAMKKDPVKKIFVG 89
Query: 145 NIPFXXXXXXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
+ +R+ F GEI+ + L D TN +GF ++ FK EE+ ++K E
Sbjct: 90 GLNPEATEEKIREYFGEFGEIEAIELPMDPKTNKRRGFVFITFK-EEDPVKKVLE 143
>UNIPROTKB|Q9XSY6 [details] [associations]
symbol:Q9XSY6 "HnRNP A/B related protein" species:9685
"Felis catus" [GO:0001837 "epithelial to mesenchymal transition"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0043565 "sequence-specific DNA binding"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0045893 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0001837 HOVERGEN:HBG002295 HSSP:Q14103 InterPro:IPR012956
Pfam:PF08143 EMBL:AF153444 ProteinModelPortal:Q9XSY6 Uniprot:Q9XSY6
Length = 279
Score = 148 (57.2 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 34/100 (34%), Positives = 51/100 (51%)
Query: 100 YVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKSNSHSIFIGNIPFXXXXXXLRKAF 159
++ FK+ SVEK L+ H +D I KA+ K IF+G + +R+ F
Sbjct: 109 FILFKDAASVEKVLDQKEHRLDGRVIDPKKAMAMKKDPVKKIFVGGLNPEATEEKIREYF 168
Query: 160 ESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
GEI+ + L D TN +GF ++ FK EEE ++K E
Sbjct: 169 GEFGEIEAIELPMDPKTNKRRGFVFITFK-EEEPVKKVLE 207
Score = 85 (35.0 bits), Expect = 0.00038, Sum P(2) = 0.00038
Identities = 18/45 (40%), Positives = 28/45 (62%)
Query: 183 GYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK 227
G +N +A EE++R+ F GEI+ + L D TN +GF ++ FK
Sbjct: 153 GGLNPEATEEKIREYFGEFGEIEAIELPMDPKTNKRRGFVFITFK 197
Score = 65 (27.9 bits), Expect = 0.00038, Sum P(2) = 0.00038
Identities = 13/54 (24%), Positives = 27/54 (50%)
Query: 135 KSNSHSIFIGNIPFXXXXXXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK 188
+ ++ +F+G + + L+ F GE+ + + +T KGFG++ FK
Sbjct: 60 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMVPNTGRSKGFGFILFK 113
>FB|FBgn0005649 [details] [associations]
symbol:Rox8 "Rox8" species:7227 "Drosophila melanogaster"
[GO:0008143 "poly(A) RNA binding" evidence=NAS] [GO:0003729 "mRNA
binding" evidence=ISS;NAS] [GO:0005685 "U1 snRNP" evidence=ISS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=ISS]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IC]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014297
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000398
GO:GO:0000381 HSSP:P11940 GO:GO:0005685
GeneTree:ENSGT00680000099967 KO:K13201 OMA:EEVYNQS
FlyBase:FBgn0005649 EMBL:BT050464 RefSeq:NP_732945.1
UniGene:Dm.6352 SMR:Q8IMX4 IntAct:Q8IMX4 MINT:MINT-303158
STRING:Q8IMX4 EnsemblMetazoa:FBtr0084591 EnsemblMetazoa:FBtr0333200
EnsemblMetazoa:FBtr0333201 EnsemblMetazoa:FBtr0333202 GeneID:42848
KEGG:dme:Dmel_CG5422 UCSC:CG5422-RD CTD:42848 InParanoid:Q8IMX4
GenomeRNAi:42848 NextBio:830893 Uniprot:Q8IMX4
Length = 470
Score = 152 (58.6 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 47/141 (33%), Positives = 72/141 (51%)
Query: 80 PRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALE-MNGHVIDEHTIRVDKALT------ 132
P K+C K+ + E + A++ + N ++ AL MN + E I+V+ A +
Sbjct: 32 PVKSC-KI--IREPGNDPYAFIEYSNYQAATTALTAMNKRLFLEKEIKVNWATSPGNQPK 88
Query: 133 TTKSNSHSIFIGNIPFXXXXXXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF--KAE 190
T S+ H IF+G++ LR+AF GEI N R++RD HT KG+ +V+F KAE
Sbjct: 89 TDISSHHHIFVGDLSPEIETETLREAFAPFGEISNCRIVRDPHTMKSKGYAFVSFVKKAE 148
Query: 191 EEELRKAFESCGEIDNVRLIR 211
E +A G+ R IR
Sbjct: 149 AENAIQAMN--GQWIGSRSIR 167
Score = 101 (40.6 bits), Expect = 0.00064, Sum P(2) = 0.00064
Identities = 20/44 (45%), Positives = 29/44 (65%)
Query: 183 GYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 226
G ++ + E E LR+AF GEI N R++RD HT KG+ +V+F
Sbjct: 100 GDLSPEIETETLREAFAPFGEISNCRIVRDPHTMKSKGYAFVSF 143
Score = 51 (23.0 bits), Expect = 0.00064, Sum P(2) = 0.00064
Identities = 11/55 (20%), Positives = 26/55 (47%)
Query: 135 KSNSHSIFIGNIPFXXXXXXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKA 189
+S ++++GN+ L F + G + + ++IR+ + Y N++A
Sbjct: 3 ESQPKTLYVGNLDSSVSEDLLIALFSTMGPVKSCKIIREPGNDPYAFIEYSNYQA 57
>FB|FBgn0086675 [details] [associations]
symbol:fne "found in neurons" species:7227 "Drosophila
melanogaster" [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0051252 "regulation of
RNA metabolic process" evidence=IMP] [GO:0008266 "poly(U) RNA
binding" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008049 "male courtship behavior" evidence=IMP]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0008266 GO:GO:0000166
EMBL:AE014298 GO:GO:0003729 Gene3D:3.30.70.330 eggNOG:COG0724
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 KO:K13208
OMA:SNSRNCP HSSP:Q60900 GO:GO:0051252 EMBL:AF239667 EMBL:BT120384
RefSeq:NP_001096965.1 RefSeq:NP_001245646.1 RefSeq:NP_001245648.1
RefSeq:NP_001245649.1 RefSeq:NP_572842.1 UniGene:Dm.3314 SMR:Q9VYI0
IntAct:Q9VYI0 MINT:MINT-1646975 STRING:Q9VYI0
EnsemblMetazoa:FBtr0073712 EnsemblMetazoa:FBtr0113493
EnsemblMetazoa:FBtr0306738 EnsemblMetazoa:FBtr0308694
EnsemblMetazoa:FBtr0308695 EnsemblMetazoa:FBtr0333319
EnsemblMetazoa:FBtr0333320 GeneID:32245 KEGG:dme:Dmel_CG4396
UCSC:CG4396-RA CTD:32245 FlyBase:FBgn0086675 InParanoid:Q9VYI0
OrthoDB:EOG44B8HT GenomeRNAi:32245 NextBio:777561 Uniprot:Q9VYI0
Length = 356
Score = 120 (47.3 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 36/152 (23%), Positives = 70/152 (46%)
Query: 56 SMFKPYGEVETVRF-RSVPVADITLPRKACIKMNKVHEKRTNMN-AYVRFKNLESVEKAL 113
S+F GE+E+ + R ++ LP + +N ++ ++ +V + E EKA+
Sbjct: 44 SLFSSIGELESCKLVRDKVSGNLVLPA-SLTALNPALQQGQSLGYGFVNYVRAEDAEKAV 102
Query: 114 E-MNGHVIDEHTIRVDKALTTTKS-NSHSIFIGNIPFXXXXXXLRKAFESCGEIDNVRLI 171
+NG + I+V A +++S ++++ +P L F S G+I R++
Sbjct: 103 NTLNGLRLQNKVIKVSYARPSSESIKGANLYVSGLPKNLSQPDLEGMFASFGKIITSRIL 162
Query: 172 RDQHTNIGKGFGYVNFKAEEEELRKAFESCGE 203
D + + KG G++ F E R E G+
Sbjct: 163 CDNISGLSKGVGFIRFDQRNEAERAIQELNGK 194
Score = 71 (30.1 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 17/52 (32%), Positives = 29/52 (55%)
Query: 188 KAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYV---NFKVSFTTLSSI 236
+ EE L + F G + +V++IRD T+ KGFG+V N+ + + S+
Sbjct: 283 ETEENVLWQLFGPFGAVQSVKVIRDLQTSKCKGFGFVTMTNYDEAVVAIQSL 334
>UNIPROTKB|F1PA19 [details] [associations]
symbol:HNRNPAB "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104347 EMBL:AAEX03007693 EMBL:AAEX03007694
Ensembl:ENSCAFT00000000377 OMA:GNDSSYG Uniprot:F1PA19
Length = 264
Score = 147 (56.8 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 37/115 (32%), Positives = 58/115 (50%)
Query: 85 IKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKSNSHSIFIG 144
IKM+ + R+ ++ FK+ SVEK L+ H +D I KA+ K IF+G
Sbjct: 31 IKMDP-NTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKKAMAMKKDPVKKIFVG 89
Query: 145 NIPFXXXXXXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
+ +R+ F GEI+ + L D +N +GF ++ FK EEE ++K E
Sbjct: 90 GLNPEATEEKIREYFGEFGEIEAIELPMDPKSNKRRGFVFITFK-EEEPVKKVLE 143
>UNIPROTKB|Q3ZC44 [details] [associations]
symbol:HNRNPAB "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104347 KO:K13044 InterPro:IPR012956
Pfam:PF08143 CTD:3182 OMA:FILFKDP EMBL:DAAA02020063
EMBL:DAAA02020062 EMBL:BC102923 IPI:IPI00843025
RefSeq:NP_001035612.1 UniGene:Bt.58979 SMR:Q3ZC44
Ensembl:ENSBTAT00000018114 GeneID:513410 KEGG:bta:513410
NextBio:20870841 Uniprot:Q3ZC44
Length = 285
Score = 147 (56.8 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 37/115 (32%), Positives = 58/115 (50%)
Query: 85 IKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKSNSHSIFIG 144
IKM+ + R+ ++ FK+ SVEK L+ H +D I KA+ K IF+G
Sbjct: 101 IKMDP-NTGRSRGFGFILFKDATSVEKVLDQKEHRLDGRVIDPKKAMAMKKDPVKKIFVG 159
Query: 145 NIPFXXXXXXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
+ +R+ F GEI+ + L D +N +GF ++ FK EEE ++K E
Sbjct: 160 GLNPEATEEKIREYFGEFGEIEAIELPMDPKSNKRRGFVFITFK-EEEPVKKVLE 213
>UNIPROTKB|F1NIB2 [details] [associations]
symbol:HNRNPAB "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
GeneTree:ENSGT00700000104347 OMA:FILFKDP EMBL:AADN02028501
EMBL:AADN02028502 EMBL:AADN02028503 IPI:IPI00574172
Ensembl:ENSGALT00000023234 ArrayExpress:F1NIB2 Uniprot:F1NIB2
Length = 263
Score = 146 (56.5 bits), Expect = 1.7e-08, P = 1.7e-08
Identities = 38/115 (33%), Positives = 57/115 (49%)
Query: 85 IKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKSNSHSIFIG 144
IKM+ + R+ ++ FK SVEK LE H +D I KA+ K IF+G
Sbjct: 31 IKMDP-NTGRSRGFGFILFKEPGSVEKVLEQKEHRLDGRLIDPKKAMAMKKDPVKKIFVG 89
Query: 145 NIPFXXXXXXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
+ +R+ F GEI+ + L D TN +GF ++ FK EE+ ++K E
Sbjct: 90 GLNPEATEEKIREYFGEFGEIEAIELPMDPKTNKRRGFVFITFK-EEDPVKKVLE 143
>FB|FBgn0032620 [details] [associations]
symbol:CG12288 species:7227 "Drosophila melanogaster"
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005875 "microtubule associated complex"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005875 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 eggNOG:COG0724 HSSP:P52298
EMBL:AY118842 ProteinModelPortal:Q8MSG1 SMR:Q8MSG1 STRING:Q8MSG1
PaxDb:Q8MSG1 PRIDE:Q8MSG1 FlyBase:FBgn0032620 InParanoid:Q8MSG1
OrthoDB:EOG40P2PK ArrayExpress:Q8MSG1 Bgee:Q8MSG1 Uniprot:Q8MSG1
Length = 435
Score = 149 (57.5 bits), Expect = 2.6e-08, P = 2.6e-08
Identities = 44/147 (29%), Positives = 71/147 (48%)
Query: 54 VTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKAL 113
+ +F+PYG V+++R R T K K +K + ++NAYV + E ++AL
Sbjct: 171 LVKLFQPYGLVQSIRLR-------TAGGKQLFK-HKQRKVAGSLNAYVVLEKPEIAQQAL 222
Query: 114 EMNGHVIDEHTIRVDKALT------------TTKSNSHSIFIGNIPFXXXXXXLRKAFES 161
+NG E+ +RV A + K +IF+G++ + LR+ F S
Sbjct: 223 ALNGSEFKENHLRVTPASMAEKFGQAKDQQPSDKDAKRTIFVGSLKYSATEEQLREIFSS 282
Query: 162 CGEIDNVRLIRDQHTNIGKGFGYVNFK 188
CGEID +R ++D KG YV F+
Sbjct: 283 CGEIDYIRCLQDGDKGC-KGVAYVCFQ 308
Score = 97 (39.2 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 20/45 (44%), Positives = 28/45 (62%)
Query: 183 GYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK 227
G + + A EE+LR+ F SCGEID +R ++D KG YV F+
Sbjct: 265 GSLKYSATEEQLREIFSSCGEIDYIRCLQDGDKGC-KGVAYVCFQ 308
Score = 81 (33.6 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 28/124 (22%), Positives = 49/124 (39%)
Query: 47 KNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNL 106
K A + K ++ ++ P A + + KA K E T N + K
Sbjct: 70 KKKAKKQAQKLKKQQNKLAPKEIKTEPEAQVKVESKATKKEKVEKEPTTAPNEKPKGK-- 127
Query: 107 ESVEKALEMNGHVIDEHTIRVDKALTTTKSNSHSIFIGNIPFXXXXXXLRKAFESCGEID 166
V K + N + DE + K + + ++F+GN+P L K F+ G +
Sbjct: 128 --VSKKAKANANNKDEEGV---KRIRNPAEEASTVFVGNLPINTKRVQLVKLFQPYGLVQ 182
Query: 167 NVRL 170
++RL
Sbjct: 183 SIRL 186
>UNIPROTKB|D6R9P3 [details] [associations]
symbol:HNRNPAB "Heterogeneous nuclear ribonucleoprotein
A/B" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441
InterPro:IPR012956 Pfam:PF08143 EMBL:AC136632 HGNC:HGNC:5034
ChiTaRS:HNRNPAB IPI:IPI00964686 ProteinModelPortal:D6R9P3
SMR:D6R9P3 Ensembl:ENST00000515193 ArrayExpress:D6R9P3 Bgee:D6R9P3
Uniprot:D6R9P3
Length = 280
Score = 145 (56.1 bits), Expect = 2.9e-08, P = 2.9e-08
Identities = 37/115 (32%), Positives = 57/115 (49%)
Query: 85 IKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKSNSHSIFIG 144
IKM+ + R+ ++ FK+ SVEK L+ H +D I KA+ K IF+G
Sbjct: 101 IKMDP-NTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKKAMAMKKDPVKKIFVG 159
Query: 145 NIPFXXXXXXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
+ +R+ F GEI+ + L D N +GF ++ FK EEE ++K E
Sbjct: 160 GLNPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFK-EEEPVKKVLE 213
>UNIPROTKB|D6RD18 [details] [associations]
symbol:HNRNPAB "Heterogeneous nuclear ribonucleoprotein
A/B" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441
InterPro:IPR012956 Pfam:PF08143 EMBL:AC136632 HGNC:HGNC:5034
ChiTaRS:HNRNPAB IPI:IPI00966854 ProteinModelPortal:D6RD18
SMR:D6RD18 Ensembl:ENST00000514633 ArrayExpress:D6RD18 Bgee:D6RD18
Uniprot:D6RD18
Length = 283
Score = 145 (56.1 bits), Expect = 3.0e-08, P = 3.0e-08
Identities = 37/115 (32%), Positives = 57/115 (49%)
Query: 85 IKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKSNSHSIFIG 144
IKM+ + R+ ++ FK+ SVEK L+ H +D I KA+ K IF+G
Sbjct: 101 IKMDP-NTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKKAMAMKKDPVKKIFVG 159
Query: 145 NIPFXXXXXXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
+ +R+ F GEI+ + L D N +GF ++ FK EEE ++K E
Sbjct: 160 GLNPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFK-EEEPVKKVLE 213
>UNIPROTKB|D6RBZ0 [details] [associations]
symbol:HNRNPAB "Heterogeneous nuclear ribonucleoprotein
A/B" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441
InterPro:IPR012956 Pfam:PF08143 EMBL:AC136632 HGNC:HGNC:5034
ChiTaRS:HNRNPAB IPI:IPI00964992 ProteinModelPortal:D6RBZ0
SMR:D6RBZ0 Ensembl:ENST00000506339 ArrayExpress:D6RBZ0 Bgee:D6RBZ0
Uniprot:D6RBZ0
Length = 327
Score = 145 (56.1 bits), Expect = 4.5e-08, P = 4.5e-08
Identities = 37/115 (32%), Positives = 57/115 (49%)
Query: 85 IKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKSNSHSIFIG 144
IKM+ + R+ ++ FK+ SVEK L+ H +D I KA+ K IF+G
Sbjct: 101 IKMDP-NTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKKAMAMKKDPVKKIFVG 159
Query: 145 NIPFXXXXXXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
+ +R+ F GEI+ + L D N +GF ++ FK EEE ++K E
Sbjct: 160 GLNPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFK-EEEPVKKVLE 213
>UNIPROTKB|Q99729 [details] [associations]
symbol:HNRNPAB "Heterogeneous nuclear ribonucleoprotein
A/B" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IDA]
[GO:0003723 "RNA binding" evidence=TAS] [GO:0003729 "mRNA binding"
evidence=TAS] [GO:0001837 "epithelial to mesenchymal transition"
evidence=ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS;IDA] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0043565 "sequence-specific DNA binding" evidence=ISS]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0045893 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0001837
EMBL:CH471165 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 KO:K13044 InterPro:IPR012956 Pfam:PF08143
EMBL:M65028 EMBL:U76713 EMBL:AK054600 EMBL:AK097657 EMBL:BC001616
EMBL:BC002625 EMBL:BC004561 EMBL:BC009359 EMBL:BC036708
IPI:IPI00106509 IPI:IPI00329355 IPI:IPI00334587 IPI:IPI00334713
PIR:S17563 RefSeq:NP_004490.2 RefSeq:NP_112556.2 UniGene:Hs.591731
UniGene:Hs.715055 PDB:3S7R PDBsum:3S7R ProteinModelPortal:Q99729
SMR:Q99729 IntAct:Q99729 MINT:MINT-4537784 STRING:Q99729
PhosphoSite:Q99729 DMDM:158523286 SWISS-2DPAGE:Q99729 PaxDb:Q99729
PRIDE:Q99729 Ensembl:ENST00000355836 Ensembl:ENST00000358344
Ensembl:ENST00000504898 Ensembl:ENST00000506259 GeneID:3182
KEGG:hsa:3182 UCSC:uc003miu.3 UCSC:uc003miv.3 CTD:3182
GeneCards:GC05P177631 HGNC:HGNC:5034 HPA:HPA046688 MIM:602688
neXtProt:NX_Q99729 PharmGKB:PA162391196 InParanoid:Q99729
OMA:FILFKDP OrthoDB:EOG42BX9K ChiTaRS:HNRNPAB
EvolutionaryTrace:Q99729 GenomeRNAi:3182 NextBio:12628
ArrayExpress:Q99729 Bgee:Q99729 CleanEx:HS_HNRNPAB
Genevestigator:Q99729 GermOnline:ENSG00000197451 Uniprot:Q99729
Length = 332
Score = 145 (56.1 bits), Expect = 4.6e-08, P = 4.6e-08
Identities = 38/116 (32%), Positives = 58/116 (50%)
Query: 85 IKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKSNSHSIFIG 144
IKM+ + R+ ++ FK+ SVEK L+ H +D I KA+ K IF+G
Sbjct: 100 IKMDP-NTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKKAMAMKKDPVKKIFVG 158
Query: 145 NI-PFXXXXXXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
+ P +R+ F GEI+ + L D N +GF ++ FK EEE ++K E
Sbjct: 159 GLNPESPTEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFK-EEEPVKKVLE 213
>UNIPROTKB|Q91903 [details] [associations]
symbol:elavl2 "ELAV-like protein 2" species:8355 "Xenopus
laevis" [GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005938 "cell cortex" evidence=IDA] [GO:0007399 "nervous system
development" evidence=IMP] [GO:0008298 "intracellular mRNA
localization" evidence=IMP] [GO:0017131 "uridine-rich cytoplasmic
polyadenylylation element binding" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA;IPI] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0051260 "protein homooligomerization" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005938 GO:GO:0007399 GO:GO:0000166
GO:GO:0051260 Gene3D:3.30.70.330 GO:GO:0000122 GO:GO:0003730
GO:GO:0030529 GO:GO:0008298 HOVERGEN:HBG002295 TIGRFAMs:TIGR01661
HSSP:P26378 KO:K13208 EMBL:X85111 EMBL:U17597 EMBL:BC170539
EMBL:BC094189 PIR:I51676 RefSeq:NP_001081035.1
RefSeq:NP_001081613.1 UniGene:Xl.1648 UniGene:Xl.34955
ProteinModelPortal:Q91903 SMR:Q91903 MINT:MINT-2880431
GeneID:394342 GeneID:397952 KEGG:xla:394342 KEGG:xla:397952
CTD:394342 CTD:397952 Xenbase:XB-GENE-6254447
Xenbase:XB-GENE-866091 GO:GO:0017131 Uniprot:Q91903
Length = 389
Score = 110 (43.8 bits), Expect = 5.3e-08, Sum P(2) = 5.3e-08
Identities = 30/120 (25%), Positives = 60/120 (50%)
Query: 82 KAC-IKMNKVHEKRTNMNAYVRFKNLESVEKALE-MNGHVIDEHTIRVDKALTTTKS-NS 138
++C + +K+ E ++ +V + + + EKA+ +NG + TI+V A ++ S
Sbjct: 93 ESCKLVRDKITEGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRD 152
Query: 139 HSIFIGNIPFXXXXXXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF--KAEEEELRK 196
++++ +P L + F G I R++ DQ T + +G G++ F + E EE K
Sbjct: 153 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 212
Score = 78 (32.5 bits), Expect = 5.3e-08, Sum P(2) = 5.3e-08
Identities = 17/36 (47%), Positives = 24/36 (66%)
Query: 189 AEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYV 224
A+E L + F G + NV++IRD +TN KGFG+V
Sbjct: 317 ADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFV 352
>ZFIN|ZDB-GENE-040704-9 [details] [associations]
symbol:elavl2 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 2 (Hu antigen B)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040704-9 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OrthoDB:EOG4JHCFV EMBL:AL954145
IPI:IPI00482002 UniGene:Dr.84858 SMR:Q1MT19
Ensembl:ENSDART00000139420 InParanoid:Q1MT19 Uniprot:Q1MT19
Length = 388
Score = 108 (43.1 bits), Expect = 5.8e-08, Sum P(2) = 5.8e-08
Identities = 30/114 (26%), Positives = 54/114 (47%)
Query: 90 VHEKRTNMN---AYVRFKNLESVEKALE-MNGHVIDEHTIRVDKALTTTKS-NSHSIFIG 144
V +K T + +V + + EKA+ +NG + TI+V A ++ S ++++
Sbjct: 100 VRDKITGQSLGYGFVNYMEPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVS 159
Query: 145 NIPFXXXXXXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF--KAEEEELRK 196
+P L + F G I R++ DQ T + +G G++ F + E EE K
Sbjct: 160 GLPKTMTQKELEQLFSQFGRIITSRILVDQVTGVSRGVGFIRFDRRVEAEEAIK 213
Score = 80 (33.2 bits), Expect = 5.8e-08, Sum P(2) = 5.8e-08
Identities = 19/51 (37%), Positives = 31/51 (60%)
Query: 189 AEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYV---NFKVSFTTLSSI 236
A+E L + F G + NV++IRD +TN KGFG+V N+ + ++S+
Sbjct: 316 ADENVLWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAVAIASL 366
>UNIPROTKB|D4A7H6 [details] [associations]
symbol:Elavl2 "ELAV-like protein 2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01661 IPI:IPI00192584 ProteinModelPortal:D4A7H6
SMR:D4A7H6 Ensembl:ENSRNOT00000009035 ArrayExpress:D4A7H6
Uniprot:D4A7H6
Length = 346
Score = 107 (42.7 bits), Expect = 8.3e-08, Sum P(2) = 8.3e-08
Identities = 31/114 (27%), Positives = 55/114 (48%)
Query: 90 VHEKRTNMN---AYVRFKNLESVEKALE-MNGHVIDEHTIRVDKALTTTKS-NSHSIFIG 144
V +K T + +V + + + EKA+ +NG + TI+V A ++ S ++++
Sbjct: 71 VRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVS 130
Query: 145 NIPFXXXXXXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF--KAEEEELRK 196
+P L + F G I R++ DQ T I +G G++ F + E EE K
Sbjct: 131 GLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIK 184
Score = 78 (32.5 bits), Expect = 8.3e-08, Sum P(2) = 8.3e-08
Identities = 17/36 (47%), Positives = 24/36 (66%)
Query: 189 AEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYV 224
A+E L + F G + NV++IRD +TN KGFG+V
Sbjct: 274 ADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFV 309
>UNIPROTKB|Q12926 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0003730 "mRNA 3'-UTR binding"
evidence=TAS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=TAS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0006355 GO:GO:0000166
Gene3D:3.30.70.330 EMBL:CH471071 GO:GO:0003730 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
EMBL:U12431 EMBL:U29943 EMBL:AB209294 EMBL:AL161628 EMBL:AL445623
EMBL:BC030692 IPI:IPI00030250 IPI:IPI00219967 PIR:I38726 PIR:I39077
RefSeq:NP_001164666.1 RefSeq:NP_001164668.1 RefSeq:NP_004423.2
UniGene:Hs.166109 ProteinModelPortal:Q12926 SMR:Q12926
STRING:Q12926 PhosphoSite:Q12926 DMDM:93141258 PaxDb:Q12926
PRIDE:Q12926 DNASU:1993 Ensembl:ENST00000223951
Ensembl:ENST00000380110 Ensembl:ENST00000380117
Ensembl:ENST00000397312 Ensembl:ENST00000544538 GeneID:1993
KEGG:hsa:1993 UCSC:uc003zps.3 UCSC:uc003zpu.3 CTD:1993
GeneCards:GC09M023690 HGNC:HGNC:3313 HPA:CAB022222 MIM:601673
neXtProt:NX_Q12926 PharmGKB:PA27741 InParanoid:Q12926 KO:K13208
OrthoDB:EOG4JHCFV PhylomeDB:Q12926 GenomeRNAi:1993 NextBio:8059
ArrayExpress:Q12926 Bgee:Q12926 CleanEx:HS_ELAVL2
Genevestigator:Q12926 GermOnline:ENSG00000107105 Uniprot:Q12926
Length = 359
Score = 107 (42.7 bits), Expect = 9.4e-08, Sum P(2) = 9.4e-08
Identities = 31/114 (27%), Positives = 55/114 (48%)
Query: 90 VHEKRTNMN---AYVRFKNLESVEKALE-MNGHVIDEHTIRVDKALTTTKS-NSHSIFIG 144
V +K T + +V + + + EKA+ +NG + TI+V A ++ S ++++
Sbjct: 71 VRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVS 130
Query: 145 NIPFXXXXXXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF--KAEEEELRK 196
+P L + F G I R++ DQ T I +G G++ F + E EE K
Sbjct: 131 GLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIK 184
Score = 78 (32.5 bits), Expect = 9.4e-08, Sum P(2) = 9.4e-08
Identities = 17/36 (47%), Positives = 24/36 (66%)
Query: 189 AEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYV 224
A+E L + F G + NV++IRD +TN KGFG+V
Sbjct: 287 ADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFV 322
>RGD|628611 [details] [associations]
symbol:Elavl2 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 2 (Hu antigen B)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AB098713 IPI:IPI00782044
UniGene:Rn.12662 ProteinModelPortal:Q8CH84 SMR:Q8CH84 STRING:Q8CH84
PhosphoSite:Q8CH84 UCSC:RGD:628611 InParanoid:Q8CH84 NextBio:625201
ArrayExpress:Q8CH84 Genevestigator:Q8CH84
GermOnline:ENSRNOG00000006853 Uniprot:Q8CH84
Length = 359
Score = 107 (42.7 bits), Expect = 9.4e-08, Sum P(2) = 9.4e-08
Identities = 31/114 (27%), Positives = 55/114 (48%)
Query: 90 VHEKRTNMN---AYVRFKNLESVEKALE-MNGHVIDEHTIRVDKALTTTKS-NSHSIFIG 144
V +K T + +V + + + EKA+ +NG + TI+V A ++ S ++++
Sbjct: 71 VRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVS 130
Query: 145 NIPFXXXXXXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF--KAEEEELRK 196
+P L + F G I R++ DQ T I +G G++ F + E EE K
Sbjct: 131 GLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIK 184
Score = 78 (32.5 bits), Expect = 9.4e-08, Sum P(2) = 9.4e-08
Identities = 17/36 (47%), Positives = 24/36 (66%)
Query: 189 AEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYV 224
A+E L + F G + NV++IRD +TN KGFG+V
Sbjct: 287 ADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFV 322
>UNIPROTKB|Q8CH84 [details] [associations]
symbol:Elavl2 "ELAV-like protein 2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AB098713 IPI:IPI00782044
UniGene:Rn.12662 ProteinModelPortal:Q8CH84 SMR:Q8CH84 STRING:Q8CH84
PhosphoSite:Q8CH84 UCSC:RGD:628611 InParanoid:Q8CH84 NextBio:625201
ArrayExpress:Q8CH84 Genevestigator:Q8CH84
GermOnline:ENSRNOG00000006853 Uniprot:Q8CH84
Length = 359
Score = 107 (42.7 bits), Expect = 9.4e-08, Sum P(2) = 9.4e-08
Identities = 31/114 (27%), Positives = 55/114 (48%)
Query: 90 VHEKRTNMN---AYVRFKNLESVEKALE-MNGHVIDEHTIRVDKALTTTKS-NSHSIFIG 144
V +K T + +V + + + EKA+ +NG + TI+V A ++ S ++++
Sbjct: 71 VRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVS 130
Query: 145 NIPFXXXXXXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF--KAEEEELRK 196
+P L + F G I R++ DQ T I +G G++ F + E EE K
Sbjct: 131 GLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIK 184
Score = 78 (32.5 bits), Expect = 9.4e-08, Sum P(2) = 9.4e-08
Identities = 17/36 (47%), Positives = 24/36 (66%)
Query: 189 AEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYV 224
A+E L + F G + NV++IRD +TN KGFG+V
Sbjct: 287 ADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFV 322
>MGI|MGI:1100887 [details] [associations]
symbol:Elavl2 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 2 (Hu antigen B)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1100887 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 CTD:1993 KO:K13208 EMBL:U29088
IPI:IPI00121676 PIR:JC6057 RefSeq:NP_034616.1 UniGene:Mm.318042
ProteinModelPortal:Q60899 SMR:Q60899 STRING:Q60899
PhosphoSite:Q60899 PaxDb:Q60899 PRIDE:Q60899
Ensembl:ENSMUST00000008633 GeneID:15569 KEGG:mmu:15569
InParanoid:Q60899 NextBio:288546 Bgee:Q60899 Genevestigator:Q60899
GermOnline:ENSMUSG00000008489 Uniprot:Q60899
Length = 360
Score = 107 (42.7 bits), Expect = 9.5e-08, Sum P(2) = 9.5e-08
Identities = 31/114 (27%), Positives = 55/114 (48%)
Query: 90 VHEKRTNMN---AYVRFKNLESVEKALE-MNGHVIDEHTIRVDKALTTTKS-NSHSIFIG 144
V +K T + +V + + + EKA+ +NG + TI+V A ++ S ++++
Sbjct: 71 VRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVS 130
Query: 145 NIPFXXXXXXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF--KAEEEELRK 196
+P L + F G I R++ DQ T I +G G++ F + E EE K
Sbjct: 131 GLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIK 184
Score = 78 (32.5 bits), Expect = 9.5e-08, Sum P(2) = 9.5e-08
Identities = 17/36 (47%), Positives = 24/36 (66%)
Query: 189 AEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYV 224
A+E L + F G + NV++IRD +TN KGFG+V
Sbjct: 288 ADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFV 323
>UNIPROTKB|B1AM49 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01661 EMBL:AL161628 EMBL:AL445623
UniGene:Hs.166109 HGNC:HGNC:3313 OMA:RAVENGP SMR:B1AM49
Ensembl:ENST00000359598 Uniprot:B1AM49
Length = 387
Score = 107 (42.7 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 31/114 (27%), Positives = 55/114 (48%)
Query: 90 VHEKRTNMN---AYVRFKNLESVEKALE-MNGHVIDEHTIRVDKALTTTKS-NSHSIFIG 144
V +K T + +V + + + EKA+ +NG + TI+V A ++ S ++++
Sbjct: 99 VRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVS 158
Query: 145 NIPFXXXXXXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF--KAEEEELRK 196
+P L + F G I R++ DQ T I +G G++ F + E EE K
Sbjct: 159 GLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIK 212
Score = 78 (32.5 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 17/36 (47%), Positives = 24/36 (66%)
Query: 189 AEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYV 224
A+E L + F G + NV++IRD +TN KGFG+V
Sbjct: 315 ADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFV 350
>UNIPROTKB|G3N063 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:DAAA02022184
EMBL:DAAA02022185 Ensembl:ENSBTAT00000065940 Uniprot:G3N063
Length = 388
Score = 107 (42.7 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 31/114 (27%), Positives = 55/114 (48%)
Query: 90 VHEKRTNMN---AYVRFKNLESVEKALE-MNGHVIDEHTIRVDKALTTTKS-NSHSIFIG 144
V +K T + +V + + + EKA+ +NG + TI+V A ++ S ++++
Sbjct: 100 VRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVS 159
Query: 145 NIPFXXXXXXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF--KAEEEELRK 196
+P L + F G I R++ DQ T I +G G++ F + E EE K
Sbjct: 160 GLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIK 213
Score = 78 (32.5 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 17/36 (47%), Positives = 24/36 (66%)
Query: 189 AEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYV 224
A+E L + F G + NV++IRD +TN KGFG+V
Sbjct: 317 ADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFV 352
>UNIPROTKB|E2RI94 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AAEX03007909
EMBL:AAEX03007910 EMBL:AAEX03007911 EMBL:AAEX03007912
Ensembl:ENSCAFT00000002645 Uniprot:E2RI94
Length = 388
Score = 107 (42.7 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 31/114 (27%), Positives = 55/114 (48%)
Query: 90 VHEKRTNMN---AYVRFKNLESVEKALE-MNGHVIDEHTIRVDKALTTTKS-NSHSIFIG 144
V +K T + +V + + + EKA+ +NG + TI+V A ++ S ++++
Sbjct: 100 VRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVS 159
Query: 145 NIPFXXXXXXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF--KAEEEELRK 196
+P L + F G I R++ DQ T I +G G++ F + E EE K
Sbjct: 160 GLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIK 213
Score = 78 (32.5 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 17/36 (47%), Positives = 24/36 (66%)
Query: 189 AEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYV 224
A+E L + F G + NV++IRD +TN KGFG+V
Sbjct: 316 ADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFV 351
>MGI|MGI:1330294 [details] [associations]
symbol:Hnrnpab "heterogeneous nuclear ribonucleoprotein A/B"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001837 "epithelial to mesenchymal transition"
evidence=IDA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=ISO] [GO:0003688 "DNA
replication origin binding" evidence=ISO] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=ISO] [GO:0043565
"sequence-specific DNA binding" evidence=IDA] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1330294 GO:GO:0005634
GO:GO:0005737 GO:GO:0045893 GO:GO:0000166 GO:GO:0003677
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0030529
GO:GO:0001837 UniGene:Mm.490267 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104347 KO:K13044
InterPro:IPR012956 Pfam:PF08143 CTD:3182 OrthoDB:EOG42BX9K
ChiTaRS:HNRNPAB EMBL:D90151 EMBL:L36663 EMBL:AK076132
IPI:IPI00117288 PIR:JQ0448 RefSeq:NP_034578.1 UniGene:Mm.280842
ProteinModelPortal:Q99020 SMR:Q99020 DIP:DIP-31415N IntAct:Q99020
MINT:MINT-4132837 STRING:Q99020 PhosphoSite:Q99020 PaxDb:Q99020
PRIDE:Q99020 Ensembl:ENSMUST00000074669 GeneID:15384 KEGG:mmu:15384
NextBio:288056 Bgee:Q99020 Genevestigator:Q99020
GermOnline:ENSMUSG00000020358 Uniprot:Q99020
Length = 285
Score = 140 (54.3 bits), Expect = 1.3e-07, P = 1.3e-07
Identities = 36/115 (31%), Positives = 57/115 (49%)
Query: 85 IKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKSNSHSIFIG 144
IKM+ + R+ ++ FK+ SVEK L+ H +D I KA+ K IF+G
Sbjct: 106 IKMDP-NTGRSRGFGFILFKDSSSVEKVLDQKEHRLDGRVIDPKKAMAMKKDPVKKIFVG 164
Query: 145 NIPFXXXXXXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
+ +R+ F GEI+ + L D N +GF ++ FK EE+ ++K E
Sbjct: 165 GLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFK-EEDPVKKVLE 218
>UNIPROTKB|Q9QX80 [details] [associations]
symbol:Hnrnpab "Hnrpab protein" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69255 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 EMBL:CH473948 HOGENOM:HOG000234441 HOVERGEN:HBG002295
HSSP:Q14103 GeneTree:ENSGT00700000104347 KO:K13044
InterPro:IPR012956 Pfam:PF08143 CTD:3182 EMBL:AC105470
EMBL:AF216753 EMBL:BC066664 EMBL:AJ238855 IPI:IPI00212723
PIR:PC4375 PIR:PC4376 PIR:PC4377 RefSeq:NP_112620.2
RefSeq:XP_003750864.1 UniGene:Rn.1427 UniGene:Rn.217734 SMR:Q9QX80
STRING:Q9QX80 Ensembl:ENSRNOT00000033056 GeneID:100910156
GeneID:83498 KEGG:rno:100910156 KEGG:rno:83498 NextBio:615904
Genevestigator:Q9QX80 Uniprot:Q9QX80
Length = 285
Score = 140 (54.3 bits), Expect = 1.3e-07, P = 1.3e-07
Identities = 36/115 (31%), Positives = 57/115 (49%)
Query: 85 IKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKSNSHSIFIG 144
IKM+ + R+ ++ FK+ SVEK L+ H +D I KA+ K IF+G
Sbjct: 106 IKMDP-NTGRSRGFGFILFKDSSSVEKVLDQKEHRLDGRVIDPKKAMAMKKDPVKKIFVG 164
Query: 145 NIPFXXXXXXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
+ +R+ F GEI+ + L D N +GF ++ FK EE+ ++K E
Sbjct: 165 GLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFK-EEDPVKKVLE 218
>UNIPROTKB|A4QUF0 [details] [associations]
symbol:PAB1 "Polyadenylate-binding protein, cytoplasmic and
nuclear" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0005737 GO:GO:0006417 GO:GO:0000166
EMBL:CM001233 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0043581 GO:GO:0051028 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
OrthoDB:EOG4QJVWJ RefSeq:XP_003712237.1 ProteinModelPortal:A4QUF0
SMR:A4QUF0 STRING:A4QUF0 EnsemblFungi:MGG_09505T0 GeneID:2680542
KEGG:mgr:MGG_09505 Uniprot:A4QUF0
Length = 762
Score = 114 (45.2 bits), Expect = 0.00087, P = 0.00087
Identities = 32/114 (28%), Positives = 57/114 (50%)
Query: 100 YVRFKNLESVEKALE-MNGHVIDE-------HTIRVDKA--LTTTKSNSHSIFIGNIPFX 149
+V ++ E+ +A++ +NG +++E H + D+ K+N +I++ NI
Sbjct: 193 FVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFDEMKANFTNIYVKNINPE 252
Query: 150 XXXXXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGE 203
R FE G++ + L RDQ T +GFG+VNF + E+ KA + E
Sbjct: 253 VTDDEFRTLFEKYGDVTSSSLARDQETGKSRGFGFVNFTSHEDA-SKAVQELNE 305
Score = 99 (39.9 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 29/99 (29%), Positives = 50/99 (50%)
Query: 99 AYVRFKNLESVEKALE-MNGHVIDEHTIRV-----DKALTTTKSNSHSIFIGNIPFXXXX 152
AYV + EKALE +N +I R+ D AL K+ ++FI N+
Sbjct: 105 AYVNYNTTADGEKALEELNYTLIKGRPCRIMWSQRDPALR--KTGQGNVFIKNLDVAIDN 162
Query: 153 XXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEE 191
L F + G I + ++ +D++ N KG+G+V+++ +E
Sbjct: 163 KALHDTFAAFGNILSCKVAQDENGN-SKGYGFVHYETDE 200
Score = 94 (38.1 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 17/42 (40%), Positives = 26/42 (61%)
Query: 185 VNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 226
+N + ++E R FE G++ + L RDQ T +GFG+VNF
Sbjct: 249 INPEVTDDEFRTLFEKYGDVTSSSLARDQETGKSRGFGFVNF 290
>RGD|69255 [details] [associations]
symbol:Hnrnpab "heterogeneous nuclear ribonucleoprotein A/B"
species:10116 "Rattus norvegicus" [GO:0001837 "epithelial to
mesenchymal transition" evidence=ISO] [GO:0003677 "DNA binding"
evidence=IDA] [GO:0003688 "DNA replication origin binding"
evidence=IDA] [GO:0005634 "nucleus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0030529 "ribonucleoprotein complex"
evidence=ISO] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IDA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISO] [GO:0043565
"sequence-specific DNA binding" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69255 GO:GO:0045892 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003688 HOVERGEN:HBG002295 HSSP:Q14103 InterPro:IPR012956
Pfam:PF08143 PIR:PC4375 PIR:PC4376 PIR:PC4377 UniGene:Rn.1427
UniGene:Rn.217734 EMBL:AF108653 IPI:IPI00208193
ProteinModelPortal:Q9Z0U8 SMR:Q9Z0U8 IntAct:Q9Z0U8 MINT:MINT-7138483
STRING:Q9Z0U8 PRIDE:Q9Z0U8 UCSC:RGD:69255 Genevestigator:Q9Z0U8
Uniprot:Q9Z0U8
Length = 298
Score = 140 (54.3 bits), Expect = 1.5e-07, P = 1.5e-07
Identities = 36/115 (31%), Positives = 57/115 (49%)
Query: 85 IKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKSNSHSIFIG 144
IKM+ + R+ ++ FK+ SVEK L+ H +D I KA+ K IF+G
Sbjct: 119 IKMDP-NTGRSRGFGFILFKDSSSVEKVLDQKEHRLDGRVIDPKKAMAMKKDPVKKIFVG 177
Query: 145 NIPFXXXXXXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
+ +R+ F GEI+ + L D N +GF ++ FK EE+ ++K E
Sbjct: 178 GLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFK-EEDPVKKVLE 231
>MGI|MGI:109157 [details] [associations]
symbol:Elavl3 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 3 (Hu antigen C)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0007399 "nervous system development" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=ISO;IDA] [GO:0030154 "cell
differentiation" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
MGI:MGI:109157 GO:GO:0007399 GO:GO:0030154 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1995 OMA:ARRYTGP
ChiTaRS:ELAVL3 EMBL:U29148 EMBL:U29149 EMBL:BC052097
IPI:IPI00122451 IPI:IPI00222990 RefSeq:NP_034617.1
UniGene:Mm.390167 PDB:1D8Z PDB:1D9A PDB:1FNX PDBsum:1D8Z
PDBsum:1D9A PDBsum:1FNX ProteinModelPortal:Q60900 SMR:Q60900
STRING:Q60900 PhosphoSite:Q60900 PaxDb:Q60900 PRIDE:Q60900
Ensembl:ENSMUST00000003501 GeneID:15571 KEGG:mmu:15571
UCSC:uc009onl.2 UCSC:uc009onn.1 InParanoid:Q60900 OrthoDB:EOG43R3N0
EvolutionaryTrace:Q60900 NextBio:288556 Bgee:Q60900
Genevestigator:Q60900 GermOnline:ENSMUSG00000003410 Uniprot:Q60900
Length = 367
Score = 106 (42.4 bits), Expect = 1.7e-07, Sum P(2) = 1.7e-07
Identities = 28/114 (24%), Positives = 54/114 (47%)
Query: 90 VHEKRTNMN---AYVRFKNLESVEKALE-MNGHVIDEHTIRVDKALTTTKS-NSHSIFIG 144
V +K T + +V + + +KA+ +NG + TI+V A ++ S ++++
Sbjct: 71 VRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDANLYVS 130
Query: 145 NIPFXXXXXXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF--KAEEEELRK 196
+P + + F G I R++ DQ T + +G G++ F + E EE K
Sbjct: 131 GLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIK 184
Score = 77 (32.2 bits), Expect = 1.7e-07, Sum P(2) = 1.7e-07
Identities = 17/37 (45%), Positives = 24/37 (64%)
Query: 188 KAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYV 224
+A+E L + F G + NV++IRD TN KGFG+V
Sbjct: 294 EADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFV 330
>RGD|628892 [details] [associations]
symbol:Elavl3 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 3 (Hu antigen C)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:628892 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 HSSP:P19339 eggNOG:COG0724 EMBL:CH473993
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1995 OrthoDB:EOG43R3N0
EMBL:AB097198 IPI:IPI00192527 RefSeq:NP_758827.1 UniGene:Rn.22586
SMR:Q76IJ9 STRING:Q76IJ9 Ensembl:ENSRNOT00000018416 GeneID:282824
KEGG:rno:282824 UCSC:RGD:628892 InParanoid:Q76IJ9 NextBio:624869
Genevestigator:Q76IJ9 Uniprot:Q76IJ9
Length = 367
Score = 106 (42.4 bits), Expect = 1.7e-07, Sum P(2) = 1.7e-07
Identities = 28/114 (24%), Positives = 54/114 (47%)
Query: 90 VHEKRTNMN---AYVRFKNLESVEKALE-MNGHVIDEHTIRVDKALTTTKS-NSHSIFIG 144
V +K T + +V + + +KA+ +NG + TI+V A ++ S ++++
Sbjct: 71 VRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDANLYVS 130
Query: 145 NIPFXXXXXXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF--KAEEEELRK 196
+P + + F G I R++ DQ T + +G G++ F + E EE K
Sbjct: 131 GLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIK 184
Score = 77 (32.2 bits), Expect = 1.7e-07, Sum P(2) = 1.7e-07
Identities = 17/37 (45%), Positives = 24/37 (64%)
Query: 188 KAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYV 224
+A+E L + F G + NV++IRD TN KGFG+V
Sbjct: 294 EADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFV 330
>UNIPROTKB|F1SNK9 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AEMK01195641
EMBL:CU407236 Ensembl:ENSSSCT00000005656 Uniprot:F1SNK9
Length = 400
Score = 106 (42.4 bits), Expect = 1.8e-07, Sum P(2) = 1.8e-07
Identities = 28/101 (27%), Positives = 50/101 (49%)
Query: 100 YVRFKNLESVEKALE-MNGHVIDEHTIRVDKALTTTKS-NSHSIFIGNIPFXXXXXXLRK 157
+V + + + EKA+ +NG + TI+V A ++ S ++++ +P L +
Sbjct: 124 FVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQ 183
Query: 158 AFESCGEIDNVRLIRDQHTNIGKGFGYVNF--KAEEEELRK 196
F G I R++ DQ T I +G G++ F + E EE K
Sbjct: 184 LFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIK 224
Score = 78 (32.5 bits), Expect = 1.8e-07, Sum P(2) = 1.8e-07
Identities = 17/36 (47%), Positives = 24/36 (66%)
Query: 189 AEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYV 224
A+E L + F G + NV++IRD +TN KGFG+V
Sbjct: 328 ADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFV 363
>UNIPROTKB|E9PTS0 [details] [associations]
symbol:Hnrnpab "Protein Hnrnpab" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69255 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
InterPro:IPR012956 Pfam:PF08143 EMBL:AC105470 IPI:IPI00951862
Ensembl:ENSRNOT00000065584 ArrayExpress:E9PTS0 Uniprot:E9PTS0
Length = 331
Score = 140 (54.3 bits), Expect = 2.0e-07, P = 2.0e-07
Identities = 36/115 (31%), Positives = 57/115 (49%)
Query: 85 IKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKSNSHSIFIG 144
IKM+ + R+ ++ FK+ SVEK L+ H +D I KA+ K IF+G
Sbjct: 105 IKMDP-NTGRSRGFGFILFKDSSSVEKVLDQKEHRLDGRVIDPKKAMAMKKDPVKKIFVG 163
Query: 145 NIPFXXXXXXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
+ +R+ F GEI+ + L D N +GF ++ FK EE+ ++K E
Sbjct: 164 GLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFK-EEDPVKKVLE 217
>UNIPROTKB|Q9QX81 [details] [associations]
symbol:Hnrnpab "RCG34663, isoform CRA_a" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0001837 "epithelial to mesenchymal transition" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0043565
"sequence-specific DNA binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69255 GO:GO:0005634 GO:GO:0005737 GO:GO:0045893 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529 GO:GO:0001837
EMBL:CH473948 HOGENOM:HOG000234441 HOVERGEN:HBG002295 HSSP:Q14103
GeneTree:ENSGT00700000104347 KO:K13044 InterPro:IPR012956
Pfam:PF08143 OMA:FILFKDP OrthoDB:EOG42BX9K EMBL:AC105470 PIR:PC4375
PIR:PC4376 PIR:PC4377 UniGene:Rn.1427 UniGene:Rn.217734
GeneID:100910156 KEGG:rno:100910156 EMBL:AJ238854 IPI:IPI00212724
RefSeq:XP_003750865.1 SMR:Q9QX81 STRING:Q9QX81
Ensembl:ENSRNOT00000004885 InParanoid:Q9QX81 Genevestigator:Q9QX81
Uniprot:Q9QX81
Length = 332
Score = 140 (54.3 bits), Expect = 2.0e-07, P = 2.0e-07
Identities = 36/115 (31%), Positives = 57/115 (49%)
Query: 85 IKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKSNSHSIFIG 144
IKM+ + R+ ++ FK+ SVEK L+ H +D I KA+ K IF+G
Sbjct: 106 IKMDP-NTGRSRGFGFILFKDSSSVEKVLDQKEHRLDGRVIDPKKAMAMKKDPVKKIFVG 164
Query: 145 NIPFXXXXXXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
+ +R+ F GEI+ + L D N +GF ++ FK EE+ ++K E
Sbjct: 165 GLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFK-EEDPVKKVLE 218
>UNIPROTKB|H0YA96 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC124016 HGNC:HGNC:5036
ChiTaRS:HNRNPD Ensembl:ENST00000514671 Uniprot:H0YA96
Length = 210
Score = 134 (52.2 bits), Expect = 2.0e-07, P = 2.0e-07
Identities = 32/101 (31%), Positives = 52/101 (51%)
Query: 100 YVRFKNLESVEKALEMNGHVIDEHTIRVDKALTT-TKSNSHSIFIGNIPFXXXXXXLRKA 158
+V FK ESV+K ++ H ++ I +A TK IF+G + +R+
Sbjct: 46 FVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREY 105
Query: 159 FESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
F GE++++ L D TN +GF ++ FK EEE ++K E
Sbjct: 106 FGGFGEVESIELPMDNKTNKRRGFCFITFK-EEEPVKKIME 145
>UNIPROTKB|E1C240 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AADN02057847
EMBL:AADN02057848 EMBL:AADN02057849 EMBL:AADN02057850
IPI:IPI00584568 ProteinModelPortal:E1C240
Ensembl:ENSGALT00000025475 Uniprot:E1C240
Length = 388
Score = 105 (42.0 bits), Expect = 2.1e-07, Sum P(2) = 2.1e-07
Identities = 30/114 (26%), Positives = 55/114 (48%)
Query: 90 VHEKRTNMN---AYVRFKNLESVEKALE-MNGHVIDEHTIRVDKALTTTKS-NSHSIFIG 144
V +K T + +V + + + EKA+ +NG + TI+V A ++ S ++++
Sbjct: 99 VRDKITGQSLGYGFVNYVDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVS 158
Query: 145 NIPFXXXXXXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF--KAEEEELRK 196
+P L + F G I R++ DQ T + +G G++ F + E EE K
Sbjct: 159 GLPKTMTQKELEQLFSQYGRIITSRILVDQVTGMSRGVGFIRFDKRIEAEEAIK 212
Score = 78 (32.5 bits), Expect = 2.1e-07, Sum P(2) = 2.1e-07
Identities = 17/36 (47%), Positives = 24/36 (66%)
Query: 189 AEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYV 224
A+E L + F G + NV++IRD +TN KGFG+V
Sbjct: 316 ADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFV 351
>ZFIN|ZDB-GENE-070424-97 [details] [associations]
symbol:hnrnpd "heterogeneous nuclear
ribonucleoprotein D" species:7955 "Danio rerio" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-070424-97 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104347
OMA:PNQNWNQ InterPro:IPR012956 Pfam:PF08143 EMBL:CR847788
IPI:IPI00512852 Ensembl:ENSDART00000101414
Ensembl:ENSDART00000123048 Uniprot:F1Q8A5
Length = 314
Score = 139 (54.0 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 33/101 (32%), Positives = 53/101 (52%)
Query: 100 YVRFKNLESVEKALEMNGHVIDEHTIRVDKALTT-TKSNSHSIFIGNIPFXXXXXXLRKA 158
+V FK ESVEK + H ++ I KA TK IF+G + +R+
Sbjct: 99 FVLFKEAESVEKVITQKEHKLNGKVIDPKKAKAMKTKEPVKKIFVGGLSPDTPEEKIREY 158
Query: 159 FESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
F++ GE++++ L + TN +GF ++ FK EEE ++K E
Sbjct: 159 FDAYGEVESIELPMENKTNKRRGFCFITFK-EEEPVKKIME 198
Score = 79 (32.9 bits), Expect = 0.00033, Sum P(2) = 0.00033
Identities = 13/37 (35%), Positives = 26/37 (70%)
Query: 191 EEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK 227
EE++R+ F++ GE++++ L + TN +GF ++ FK
Sbjct: 152 EEKIREYFDAYGEVESIELPMENKTNKRRGFCFITFK 188
Score = 74 (31.1 bits), Expect = 0.00033, Sum P(2) = 0.00033
Identities = 18/56 (32%), Positives = 28/56 (50%)
Query: 141 IFIGNIPFXXXXXXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRK 196
+F+G + + L+ F GE+ + L D T +GFG+V FK E E + K
Sbjct: 56 MFVGGLSWDTTKKDLKDYFTKFGEVVDCTLKLDPLTGRSRGFGFVLFK-EAESVEK 110
>ZFIN|ZDB-GENE-040426-2516 [details] [associations]
symbol:zgc:77052 "zgc:77052" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-2516 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104347 InterPro:IPR012956
Pfam:PF08143 OrthoDB:EOG42BX9K EMBL:FP085391 EMBL:BC066681
IPI:IPI00497482 RefSeq:NP_998467.1 UniGene:Dr.75633 SMR:Q6NYA1
STRING:Q6NYA1 Ensembl:ENSDART00000098408 GeneID:406594
KEGG:dre:406594 OMA:EIKTYFS NextBio:20818146 Uniprot:Q6NYA1
Length = 309
Score = 138 (53.6 bits), Expect = 2.9e-07, P = 2.9e-07
Identities = 37/142 (26%), Positives = 69/142 (48%)
Query: 85 IKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKSNSHSIFIG 144
IKM+ + R+ ++ FK +SV++ L+ H +D I +A+ K IF+G
Sbjct: 76 IKMDS-NTGRSRGFGFILFKESDSVDRVLQQKEHRLDGRQIDPKRAMAIKKEPVKKIFVG 134
Query: 145 NIPFXXXXXXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAE---EEELRKAFES- 200
+ +R+ F S GEI+ + L D T+ +GF ++ FK E ++ L K + +
Sbjct: 135 GLNPETTEEKIREYFGSFGEIETIELPTDPKTSKRRGFVFITFKEEFAVKKILEKKYHNV 194
Query: 201 CGEIDNVRLIRDQHTNIGKGFG 222
CG +++ + + + FG
Sbjct: 195 CGSKCEIKIAQPKEIYQQQQFG 216
>SGD|S000005119 [details] [associations]
symbol:NOP13 "Nucleolar protein found in preribosomal
complexes" species:4932 "Saccharomyces cerevisiae" [GO:0030684
"preribosome" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IEA;IDA] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 SGD:S000005119 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 EMBL:BK006947 GO:GO:0003723 eggNOG:COG0724
GO:GO:0030684 EMBL:Z71451 PIR:S63130 RefSeq:NP_014224.2
ProteinModelPortal:P53883 SMR:P53883 DIP:DIP-4331N IntAct:P53883
MINT:MINT-479067 STRING:P53883 PaxDb:P53883 PeptideAtlas:P53883
EnsemblFungi:YNL175C GeneID:855547 KEGG:sce:YNL175C CYGD:YNL175c
HOGENOM:HOG000193653 OMA:KNPPSRI OrthoDB:EOG47DDRF NextBio:979619
Genevestigator:P53883 GermOnline:YNL175C Uniprot:P53883
Length = 403
Score = 140 (54.3 bits), Expect = 3.0e-07, P = 3.0e-07
Identities = 45/156 (28%), Positives = 73/156 (46%)
Query: 63 EVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALEM-----NG 117
E E R + +++PR A N + K Y+ FKN+E ++ LE+ NG
Sbjct: 153 EDEKSRVTEQDITRLSMPRVAAKNSNAMKNKGF---CYMFFKNVEQMKAVLELSESHLNG 209
Query: 118 HVI-----DEHTIRVDKA-LTTTKSN--SHSIFIGNIPFXXXXXXLRKAFESCGEIDNVR 169
+ + ++ R DK L N S +F+GN+ F LRK F+ CG+I +R
Sbjct: 210 RNMLIKDSENYSGRPDKDDLVAMSKNPPSRILFVGNLSFDVTDDLLRKHFQHCGDIVKIR 269
Query: 170 LIRDQHTNIGKGFGYVNFKAEEEELRKAFE-SCGEI 204
+ + + KGF +++FK EE + SC +I
Sbjct: 270 MATFEDSGKCKGFAFIDFKNEEGSTNALKDKSCRKI 305
>WB|WBGene00011155 [details] [associations]
symbol:R09B3.2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 GeneTree:ENSGT00550000074641 EMBL:Z81108
HSSP:P33240 PIR:T24067 RefSeq:NP_493022.1 ProteinModelPortal:O45712
SMR:O45712 DIP:DIP-25840N MINT:MINT-1057569 STRING:O45712
PaxDb:O45712 EnsemblMetazoa:R09B3.2 GeneID:173070
KEGG:cel:CELE_R09B3.2 UCSC:R09B3.2 CTD:173070 WormBase:R09B3.2
InParanoid:O45712 OMA:NINEARP NextBio:878155 Uniprot:O45712
Length = 83
Score = 120 (47.3 bits), Expect = 3.0e-07, P = 3.0e-07
Identities = 27/77 (35%), Positives = 42/77 (54%)
Query: 136 SNSHSIFIGNIPFXXXXXXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELR 195
S S+++GN PF L F S G+I+NVR++ D+ T +GF ++ F AEE +
Sbjct: 2 SGIFSVYVGNAPFQTTEEELGNFFSSIGQINNVRIVCDRETGRPRGFAFIEF-AEEGSAQ 60
Query: 196 KAFESCGEID-NVRLIR 211
+A E + N R +R
Sbjct: 61 RAVEQMNGAEFNGRPLR 77
Score = 95 (38.5 bits), Expect = 0.00020, P = 0.00020
Identities = 18/44 (40%), Positives = 27/44 (61%)
Query: 183 GYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 226
G F+ EEEL F S G+I+NVR++ D+ T +GF ++ F
Sbjct: 10 GNAPFQTTEEELGNFFSSIGQINNVRIVCDRETGRPRGFAFIEF 53
>RGD|1309982 [details] [associations]
symbol:Hnrnpc "heterogeneous nuclear ribonucleoprotein C
(C1/C2)" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003729 "mRNA binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005681 "spliceosomal complex" evidence=IEA;ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0042802 "identical protein binding"
evidence=ISO] [GO:0045120 "pronucleus" evidence=ISO] [GO:0071013
"catalytic step 2 spliceosome" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1309982 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 eggNOG:COG0724
HOGENOM:HOG000234441 HOVERGEN:HBG002295 EMBL:X16933 IPI:IPI00213609
PIR:S09017 UniGene:Rn.101929 ProteinModelPortal:P17132 SMR:P17132
STRING:P17132 PRIDE:P17132 UCSC:RGD:1309982 ArrayExpress:P17132
Genevestigator:P17132 GermOnline:ENSRNOG00000002292 Uniprot:P17132
Length = 158
Score = 120 (47.3 bits), Expect = 3.0e-07, P = 3.0e-07
Identities = 29/94 (30%), Positives = 48/94 (51%)
Query: 107 ESVEKALEMNGHVIDEHTIRVDKALTT-TKSNSHSIFIGNIPFXXXXXXLRKAFESCGEI 165
ESV+K ++ H ++ I +A TK IF+G + +R+ F GE+
Sbjct: 1 ESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEV 60
Query: 166 DNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
+++ L D TN +GF ++ FK EEE ++K E
Sbjct: 61 ESIELPMDNKTNKRRGFCFITFK-EEEPVKKIME 93
>UNIPROTKB|F1PVV1 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:AAEX03012413
Ensembl:ENSCAFT00000027494 Uniprot:F1PVV1
Length = 367
Score = 104 (41.7 bits), Expect = 3.0e-07, Sum P(2) = 3.0e-07
Identities = 28/114 (24%), Positives = 54/114 (47%)
Query: 90 VHEKRTNMN---AYVRFKNLESVEKALE-MNGHVIDEHTIRVDKALTTTKS-NSHSIFIG 144
V +K T + +V + + +KA+ +NG + TI+V A ++ S ++++
Sbjct: 71 VRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDANLYVS 130
Query: 145 NIPFXXXXXXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF--KAEEEELRK 196
+P + + F G I R++ DQ T + +G G++ F + E EE K
Sbjct: 131 GLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 184
Score = 77 (32.2 bits), Expect = 3.0e-07, Sum P(2) = 3.0e-07
Identities = 17/37 (45%), Positives = 24/37 (64%)
Query: 188 KAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYV 224
+A+E L + F G + NV++IRD TN KGFG+V
Sbjct: 294 EADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFV 330
>UNIPROTKB|Q14576 [details] [associations]
symbol:ELAVL3 "ELAV-like protein 3" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0007399
"nervous system development" evidence=IEA] [GO:0030154 "cell
differentiation" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IDA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0007399 GO:GO:0030154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
KO:K13208 EMBL:L26405 EMBL:AY036909 EMBL:AC008481 EMBL:BC014144
EMBL:D26158 IPI:IPI00031552 IPI:IPI00140449 RefSeq:NP_001411.2
RefSeq:NP_115657.2 UniGene:Hs.1701 ProteinModelPortal:Q14576
SMR:Q14576 IntAct:Q14576 MINT:MINT-1471958 STRING:Q14576
PhosphoSite:Q14576 DMDM:21264436 PaxDb:Q14576 PRIDE:Q14576
Ensembl:ENST00000359227 Ensembl:ENST00000438662 GeneID:1995
KEGG:hsa:1995 UCSC:uc002mrx.1 UCSC:uc002mry.1 CTD:1995
GeneCards:GC19M011562 HGNC:HGNC:3314 HPA:CAB013066 MIM:603458
neXtProt:NX_Q14576 PharmGKB:PA27742 InParanoid:Q14576 OMA:ARRYTGP
PhylomeDB:Q14576 ChiTaRS:ELAVL3 GenomeRNAi:1995 NextBio:8067
ArrayExpress:Q14576 Bgee:Q14576 CleanEx:HS_ELAVL3
Genevestigator:Q14576 GermOnline:ENSG00000196361 Uniprot:Q14576
Length = 367
Score = 104 (41.7 bits), Expect = 3.0e-07, Sum P(2) = 3.0e-07
Identities = 28/114 (24%), Positives = 54/114 (47%)
Query: 90 VHEKRTNMN---AYVRFKNLESVEKALE-MNGHVIDEHTIRVDKALTTTKS-NSHSIFIG 144
V +K T + +V + + +KA+ +NG + TI+V A ++ S ++++
Sbjct: 71 VRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDANLYVS 130
Query: 145 NIPFXXXXXXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF--KAEEEELRK 196
+P + + F G I R++ DQ T + +G G++ F + E EE K
Sbjct: 131 GLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 184
Score = 77 (32.2 bits), Expect = 3.0e-07, Sum P(2) = 3.0e-07
Identities = 17/37 (45%), Positives = 24/37 (64%)
Query: 188 KAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYV 224
+A+E L + F G + NV++IRD TN KGFG+V
Sbjct: 294 EADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFV 330
>UNIPROTKB|F1SA16 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:CU855518
Ensembl:ENSSSCT00000014872 Uniprot:F1SA16
Length = 367
Score = 104 (41.7 bits), Expect = 3.0e-07, Sum P(2) = 3.0e-07
Identities = 28/114 (24%), Positives = 54/114 (47%)
Query: 90 VHEKRTNMN---AYVRFKNLESVEKALE-MNGHVIDEHTIRVDKALTTTKS-NSHSIFIG 144
V +K T + +V + + +KA+ +NG + TI+V A ++ S ++++
Sbjct: 71 VRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDANLYVS 130
Query: 145 NIPFXXXXXXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF--KAEEEELRK 196
+P + + F G I R++ DQ T + +G G++ F + E EE K
Sbjct: 131 GLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 184
Score = 77 (32.2 bits), Expect = 3.0e-07, Sum P(2) = 3.0e-07
Identities = 17/37 (45%), Positives = 24/37 (64%)
Query: 188 KAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYV 224
+A+E L + F G + NV++IRD TN KGFG+V
Sbjct: 294 EADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFV 330
>UNIPROTKB|F1N4V6 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:DAAA02019487
IPI:IPI00710891 Ensembl:ENSBTAT00000019169 Uniprot:F1N4V6
Length = 368
Score = 104 (41.7 bits), Expect = 3.1e-07, Sum P(2) = 3.1e-07
Identities = 28/114 (24%), Positives = 54/114 (47%)
Query: 90 VHEKRTNMN---AYVRFKNLESVEKALE-MNGHVIDEHTIRVDKALTTTKS-NSHSIFIG 144
V +K T + +V + + +KA+ +NG + TI+V A ++ S ++++
Sbjct: 71 VRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDANLYVS 130
Query: 145 NIPFXXXXXXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF--KAEEEELRK 196
+P + + F G I R++ DQ T + +G G++ F + E EE K
Sbjct: 131 GLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 184
Score = 77 (32.2 bits), Expect = 3.1e-07, Sum P(2) = 3.1e-07
Identities = 17/37 (45%), Positives = 24/37 (64%)
Query: 188 KAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYV 224
+A+E L + F G + NV++IRD TN KGFG+V
Sbjct: 295 EADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFV 331
>TAIR|locus:2077137 [details] [associations]
symbol:AT3G46020 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL162459 eggNOG:COG0724
HOGENOM:HOG000276232 HSSP:Q61474 EMBL:BT012586 EMBL:BT015095
IPI:IPI00521590 RefSeq:NP_190188.1 UniGene:At.35968
ProteinModelPortal:Q9LZT1 SMR:Q9LZT1 EnsemblPlants:AT3G46020.1
GeneID:823745 KEGG:ath:AT3G46020 TAIR:At3g46020 InParanoid:Q9LZT1
OMA:QIKEARL PhylomeDB:Q9LZT1 ProtClustDB:CLSN2915511
Genevestigator:Q9LZT1 Uniprot:Q9LZT1
Length = 102
Score = 119 (46.9 bits), Expect = 3.9e-07, P = 3.9e-07
Identities = 29/77 (37%), Positives = 42/77 (54%)
Query: 135 KSNSHSIFIGNIPFXXXXXXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEEL 194
K S +F+ + LR+ F G+I RLIRD T KGFG++ F +E++
Sbjct: 3 KRISAQLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDA- 61
Query: 195 RKAFESC-GEIDNVRLI 210
RKA +S G+I + RLI
Sbjct: 62 RKALKSLDGKIVDGRLI 78
>ZFIN|ZDB-GENE-000210-17 [details] [associations]
symbol:hug "HuG" species:7955 "Danio rerio"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-000210-17 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 EMBL:CR550302 IPI:IPI00998450
ProteinModelPortal:F1QUX1 Ensembl:ENSDART00000122728
ArrayExpress:F1QUX1 Bgee:F1QUX1 Uniprot:F1QUX1
Length = 368
Score = 104 (41.7 bits), Expect = 3.9e-07, Sum P(2) = 3.9e-07
Identities = 36/155 (23%), Positives = 68/155 (43%)
Query: 47 KNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMN-AYVRFKN 105
+N + + S+F GEVE+ + L R M+ H ++ +V + N
Sbjct: 65 QNMSQEELRSLFSSIGEVESAK----------LIRDKMAGMSAHHTLGHSLGYGFVNYVN 114
Query: 106 LESVEKALE-MNGHVIDEHTIRVDKALTTTKS-NSHSIFIGNIPFXXXXXXLRKAFESCG 163
E+A+ +NG + TI+V A ++ +++I +P + F G
Sbjct: 115 PSDAERAINTLNGLRLQSKTIKVSYARPSSDGIKDANLYISGLPKTMTQKNVEDMFTQYG 174
Query: 164 EIDNVRLIRDQHTNIGKGFGYVNF--KAEEEELRK 196
I N R++ DQ + + +G ++ F ++E EE K
Sbjct: 175 RIINSRILVDQASGLSRGVAFIRFDKRSEAEEAIK 209
Score = 80 (33.2 bits), Expect = 0.00025, Sum P(2) = 0.00025
Identities = 31/115 (26%), Positives = 60/115 (52%)
Query: 83 ACIKMNKVHEKRTNMNAYVRFKNLESVEKAL-EM-NGHVIDEHTIRVDKALTTTKSNSHS 140
AC+K+ +V + + +++ K S+++ + +M NG+ E + D+ + K+N
Sbjct: 9 ACLKVCEVQNQGNDRDSH---KGASSIKQEVYDMPNGY---EDPMG-DEP-SDAKTN--- 57
Query: 141 IFIGNIPFXXXXXXLRKAFESCGEIDNVRLIRDQ------HTNIGK--GFGYVNF 187
+ I +P LR F S GE+++ +LIRD+ H +G G+G+VN+
Sbjct: 58 LIINYLPQNMSQEELRSLFSSIGEVESAKLIRDKMAGMSAHHTLGHSLGYGFVNY 112
Score = 76 (31.8 bits), Expect = 3.9e-07, Sum P(2) = 3.9e-07
Identities = 19/51 (37%), Positives = 32/51 (62%)
Query: 189 AEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYV---NFKVSFTTLSSI 236
A+E L + F G + NV++IRD +T+ KGFG+V N++ + +SS+
Sbjct: 297 ADEGILWQMFGPFGAVTNVKVIRDFNTSKCKGFGFVTMTNYEEAAMAISSL 347
>UNIPROTKB|Q5ZIH1 [details] [associations]
symbol:HNRNPD "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0042162 "telomeric DNA binding"
evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0043488 GO:GO:0042162
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295
UniGene:Gga.4605 GeneTree:ENSGT00700000104347 KO:K13044
OrthoDB:EOG49W2FZ CTD:3184 OMA:PNQNWNQ EMBL:AADN02009040
EMBL:AJ720813 IPI:IPI00597667 RefSeq:NP_001026314.1 SMR:Q5ZIH1
STRING:Q5ZIH1 Ensembl:ENSGALT00000018234 GeneID:422602
KEGG:gga:422602 InParanoid:Q5ZIH1 NextBio:20825212 Uniprot:Q5ZIH1
Length = 257
Score = 135 (52.6 bits), Expect = 4.0e-07, P = 4.0e-07
Identities = 32/101 (31%), Positives = 53/101 (52%)
Query: 100 YVRFKNLESVEKALEMNGHVIDEHTIRVDKALTT-TKSNSHSIFIGNIPFXXXXXXLRKA 158
+V FK ESV+K ++ H ++ I +A TK IF+G + +R+
Sbjct: 44 FVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREY 103
Query: 159 FESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
F + GE++++ L D TN +GF ++ FK EEE ++K E
Sbjct: 104 FGAFGEVESIELPMDNKTNKRRGFCFITFK-EEEPVKKIME 143
>UNIPROTKB|F1NCW4 [details] [associations]
symbol:HNRNPD "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0042162 "telomeric DNA binding"
evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0043488 GO:GO:0042162
GeneTree:ENSGT00700000104347 OMA:PNQNWNQ EMBL:AADN02009040
IPI:IPI00819680 Ensembl:ENSGALT00000038011 ArrayExpress:F1NCW4
Uniprot:F1NCW4
Length = 258
Score = 135 (52.6 bits), Expect = 4.1e-07, P = 4.1e-07
Identities = 32/101 (31%), Positives = 53/101 (52%)
Query: 100 YVRFKNLESVEKALEMNGHVIDEHTIRVDKALTT-TKSNSHSIFIGNIPFXXXXXXLRKA 158
+V FK ESV+K ++ H ++ I +A TK IF+G + +R+
Sbjct: 45 FVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREY 104
Query: 159 FESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
F + GE++++ L D TN +GF ++ FK EEE ++K E
Sbjct: 105 FGAFGEVESIELPMDNKTNKRRGFCFITFK-EEEPVKKIME 144
>UNIPROTKB|I3LPG0 [details] [associations]
symbol:MSI1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0005844
"polysome" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005844 GeneTree:ENSGT00700000104255 OMA:GLPGSHP
EMBL:FP690339 Ensembl:ENSSSCT00000027694 Uniprot:I3LPG0
Length = 332
Score = 137 (53.3 bits), Expect = 4.6e-07, P = 4.6e-07
Identities = 33/115 (28%), Positives = 59/115 (51%)
Query: 82 KACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTI--RVD---KALTTTKS 136
K C+ M KR+ +V F + V+K L + H +D TI +V +A +
Sbjct: 14 KECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVT 73
Query: 137 NSHSIFIGNIPFXXXXXXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEE 191
+ IF+G + +++ FE G++D+ L+ D+ TN +GFG+V F++E+
Sbjct: 74 RTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESED 128
>UNIPROTKB|Q5ZI72 [details] [associations]
symbol:HNRPDL "Heterogeneous nuclear ribonucleoprotein
D-like" species:9031 "Gallus gallus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0006355
GO:GO:0000166 GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0006351
GO:GO:0003723 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 EMBL:AJ720912 IPI:IPI00591109
RefSeq:NP_001026313.1 UniGene:Gga.4605 HSSP:Q14103
ProteinModelPortal:Q5ZI72 SMR:Q5ZI72 PRIDE:Q5ZI72
Ensembl:ENSGALT00000018235 GeneID:422601 KEGG:gga:422601 CTD:9987
GeneTree:ENSGT00700000104347 KO:K13044 NextBio:20825211
Uniprot:Q5ZI72
Length = 301
Score = 136 (52.9 bits), Expect = 4.8e-07, P = 4.8e-07
Identities = 32/102 (31%), Positives = 53/102 (51%)
Query: 100 YVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTT-KSNSHSIFIGNIPFXXXXXXLRKA 158
+V FK+ SVEK LE+ H +D I +A K +F+G + +++
Sbjct: 75 FVLFKDAASVEKVLELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDTSEEQIKEY 134
Query: 159 FESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFES 200
F + GEI+N+ L D TN +GF ++ + +EE ++K ES
Sbjct: 135 FGAFGEIENIELPMDTKTNERRGFCFITY-TDEEPVKKLLES 175
>UNIPROTKB|F1MS42 [details] [associations]
symbol:MSI1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0005844
"polysome" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005844 GeneTree:ENSGT00700000104255 OMA:GLPGSHP
EMBL:DAAA02045450 EMBL:DAAA02045451 IPI:IPI00718423
Ensembl:ENSBTAT00000012926 Uniprot:F1MS42
Length = 342
Score = 137 (53.3 bits), Expect = 4.9e-07, P = 4.9e-07
Identities = 33/115 (28%), Positives = 59/115 (51%)
Query: 82 KACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTI--RVD---KALTTTKS 136
K C+ M KR+ +V F + V+K L + H +D TI +V +A +
Sbjct: 27 KECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVT 86
Query: 137 NSHSIFIGNIPFXXXXXXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEE 191
+ IF+G + +++ FE G++D+ L+ D+ TN +GFG+V F++E+
Sbjct: 87 RTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESED 141
>UNIPROTKB|O43347 [details] [associations]
symbol:MSI1 "RNA-binding protein Musashi homolog 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005844 "polysome" evidence=IEA] [GO:0008266
"poly(U) RNA binding" evidence=IEA] [GO:0009725 "response to
hormone stimulus" evidence=IEA] [GO:0030855 "epithelial cell
differentiation" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0003723 "RNA binding"
evidence=TAS] [GO:0007399 "nervous system development"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0007399 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0009725 GO:GO:0005844 GO:GO:0030855
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
EMBL:AB012851 EMBL:AC003982 EMBL:AB072590 EMBL:AB072591
EMBL:AB072592 EMBL:AB073212 IPI:IPI00001007 RefSeq:NP_002433.1
UniGene:Hs.158311 ProteinModelPortal:O43347 SMR:O43347
IntAct:O43347 MINT:MINT-1432501 STRING:O43347 PhosphoSite:O43347
PaxDb:O43347 PRIDE:O43347 DNASU:4440 Ensembl:ENST00000257552
GeneID:4440 KEGG:hsa:4440 UCSC:uc001tye.1 CTD:4440
GeneCards:GC12M120779 HGNC:HGNC:7330 HPA:CAB022337 MIM:603328
neXtProt:NX_O43347 PharmGKB:PA31137 InParanoid:O43347 OMA:GLPGSHP
OrthoDB:EOG48GW3J GenomeRNAi:4440 NextBio:17313 ArrayExpress:O43347
Bgee:O43347 CleanEx:HS_MSI1 Genevestigator:O43347
GermOnline:ENSG00000135097 Uniprot:O43347
Length = 362
Score = 137 (53.3 bits), Expect = 5.6e-07, P = 5.6e-07
Identities = 33/115 (28%), Positives = 59/115 (51%)
Query: 82 KACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTI--RVD---KALTTTKS 136
K C+ M KR+ +V F + V+K L + H +D TI +V +A +
Sbjct: 47 KECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVT 106
Query: 137 NSHSIFIGNIPFXXXXXXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEE 191
+ IF+G + +++ FE G++D+ L+ D+ TN +GFG+V F++E+
Sbjct: 107 RTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESED 161
>UNIPROTKB|H0Y8G5 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC124016 HGNC:HGNC:5036
ChiTaRS:HNRNPD Ensembl:ENST00000509263 Bgee:H0Y8G5 Uniprot:H0Y8G5
Length = 261
Score = 134 (52.2 bits), Expect = 5.6e-07, P = 5.6e-07
Identities = 32/101 (31%), Positives = 52/101 (51%)
Query: 100 YVRFKNLESVEKALEMNGHVIDEHTIRVDKALTT-TKSNSHSIFIGNIPFXXXXXXLRKA 158
+V FK ESV+K ++ H ++ I +A TK IF+G + +R+
Sbjct: 75 FVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREY 134
Query: 159 FESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
F GE++++ L D TN +GF ++ FK EEE ++K E
Sbjct: 135 FGGFGEVESIELPMDNKTNKRRGFCFITFK-EEEPVKKIME 174
>UNIPROTKB|P19338 [details] [associations]
symbol:NCL "Nucleolin" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0008022 "protein C-terminus
binding" evidence=IPI] [GO:0001525 "angiogenesis" evidence=IDA]
[GO:0005938 "cell cortex" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0042162 "telomeric DNA binding"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005938
Pathway_Interaction_DB:telomerasepathway GO:GO:0005654
GO:GO:0005730 Pathway_Interaction_DB:aurora_b_pathway GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0001525 GO:GO:0003723 GO:GO:0030529
GO:GO:0042162 EMBL:AC017104 eggNOG:COG0724 HOVERGEN:HBG002295
KO:K11294 CTD:4691 HOGENOM:HOG000113885 EMBL:M60858 EMBL:AK091742
IPI:IPI00604620 PIR:A35804 PIR:S53728 RefSeq:NP_005372.2
UniGene:Hs.79110 PDB:2FC8 PDB:2FC9 PDB:2KRR PDBsum:2FC8 PDBsum:2FC9
PDBsum:2KRR ProteinModelPortal:P19338 SMR:P19338 DIP:DIP-89N
IntAct:P19338 MINT:MINT-4999081 STRING:P19338 PhosphoSite:P19338
DMDM:90110781 DOSAC-COBS-2DPAGE:P19338 SWISS-2DPAGE:P19338
PaxDb:P19338 PRIDE:P19338 DNASU:4691 Ensembl:ENST00000322723
GeneID:4691 KEGG:hsa:4691 UCSC:uc002vru.3 GeneCards:GC02M232318
HGNC:HGNC:7667 HPA:CAB004210 HPA:HPA023981 MIM:164035
neXtProt:NX_P19338 PharmGKB:PA31469 InParanoid:P19338 OMA:KERDTRT
OrthoDB:EOG45MN5J PhylomeDB:P19338 ChiTaRS:NCL
EvolutionaryTrace:P19338 GenomeRNAi:4691 NextBio:18090
PMAP-CutDB:P19338 ArrayExpress:P19338 Bgee:P19338 CleanEx:HS_NCL
Genevestigator:P19338 GermOnline:ENSG00000115053 Uniprot:P19338
Length = 710
Score = 124 (48.7 bits), Expect = 5.5e-05, P = 5.5e-05
Identities = 39/147 (26%), Positives = 74/147 (50%)
Query: 85 IKMNKVHEKRTNMNAYVRFKNLESVEKALEM-NGHVIDEHTIRVD----KALTTTKSN-S 138
IK+ + ++ A++ F + E ++AL N I+ IR++ + +S S
Sbjct: 512 IKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPNARSQPS 571
Query: 139 HSIFIGNIPFXXXXXXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEE--LRK 196
++F+ + L+++F+ G + R++ D+ T KGFG+V+F +EE+ ++
Sbjct: 572 KTLFVKGLSEDTTEETLKESFD--GSV-RARIVTDRETGSSKGFGFVDFNSEEDAKAAKE 628
Query: 197 AFESCGEIDNVRLIRDQHTNIGKG-FG 222
A E GEID ++ D G+G FG
Sbjct: 629 AMED-GEIDGNKVTLDWAKPKGEGGFG 654
Score = 114 (45.2 bits), Expect = 6.2e-07, Sum P(2) = 6.2e-07
Identities = 31/108 (28%), Positives = 54/108 (50%)
Query: 95 TNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKAL---TTTKSNSHSIFIGNIPFXXX 151
T YV F++ E +EKALE+ G + + I+++K + + ++ ++ N+P+
Sbjct: 346 TRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPKGKDSKKERDARTLLAKNLPYKVT 405
Query: 152 XXXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
L++ FE EI RL+ + KG Y+ FK E + K FE
Sbjct: 406 QDELKEVFEDAAEI---RLVSKDGKS--KGIAYIEFKTEADA-EKTFE 447
Score = 70 (29.7 bits), Expect = 6.2e-07, Sum P(2) = 6.2e-07
Identities = 14/36 (38%), Positives = 24/36 (66%)
Query: 191 EEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 226
EE L+++F+ G + R++ D+ T KGFG+V+F
Sbjct: 585 EETLKESFD--GSV-RARIVTDRETGSSKGFGFVDF 617
>UNIPROTKB|Q4R4J7 [details] [associations]
symbol:NCL "Nucleolin" species:9541 "Macaca fascicularis"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0030529
"ribonucleoprotein complex" evidence=ISS] [GO:0042162 "telomeric
DNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030529 GO:GO:0042162 HOVERGEN:HBG002295 OrthoDB:EOG45MN5J
EMBL:AB169897 EMBL:AB168220 ProteinModelPortal:Q4R4J7 SMR:Q4R4J7
PRIDE:Q4R4J7 Uniprot:Q4R4J7
Length = 711
Score = 124 (48.7 bits), Expect = 5.6e-05, P = 5.6e-05
Identities = 39/147 (26%), Positives = 74/147 (50%)
Query: 85 IKMNKVHEKRTNMNAYVRFKNLESVEKALEM-NGHVIDEHTIRVD----KALTTTKSN-S 138
IK+ + ++ A++ F + E ++AL N I+ IR++ + +S S
Sbjct: 513 IKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPNARSQPS 572
Query: 139 HSIFIGNIPFXXXXXXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEE--LRK 196
++F+ + L+++F+ G + R++ D+ T KGFG+V+F +EE+ ++
Sbjct: 573 KTLFVKGLSEDTTEETLKESFD--GSV-RARIVTDRETGSSKGFGFVDFNSEEDAKAAKE 629
Query: 197 AFESCGEIDNVRLIRDQHTNIGKG-FG 222
A E GEID ++ D G+G FG
Sbjct: 630 AMED-GEIDGNKVTLDWAKPKGEGGFG 655
Score = 114 (45.2 bits), Expect = 6.2e-07, Sum P(2) = 6.2e-07
Identities = 31/108 (28%), Positives = 54/108 (50%)
Query: 95 TNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKAL---TTTKSNSHSIFIGNIPFXXX 151
T YV F++ E +EKALE+ G + + I+++K + + ++ ++ N+P+
Sbjct: 347 TRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPKGKDSKKERDARTLLAKNLPYKVT 406
Query: 152 XXXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
L++ FE EI RL+ + KG Y+ FK E + K FE
Sbjct: 407 QDELKEVFEDAAEI---RLVSKDGKS--KGIAYIEFKTEADA-EKTFE 448
Score = 70 (29.7 bits), Expect = 6.2e-07, Sum P(2) = 6.2e-07
Identities = 14/36 (38%), Positives = 24/36 (66%)
Query: 191 EEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 226
EE L+++F+ G + R++ D+ T KGFG+V+F
Sbjct: 586 EETLKESFD--GSV-RARIVTDRETGSSKGFGFVDF 618
>UNIPROTKB|Q5RF26 [details] [associations]
symbol:NCL "Nucleolin" species:9601 "Pongo abelii"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0030529
"ribonucleoprotein complex" evidence=ISS] [GO:0042162 "telomeric
DNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030529 GO:GO:0042162 HOVERGEN:HBG002295 KO:K11294 CTD:4691
EMBL:CR857335 RefSeq:NP_001127178.1 UniGene:Pab.18146
ProteinModelPortal:Q5RF26 SMR:Q5RF26 GeneID:100174230
KEGG:pon:100174230 InParanoid:Q5RF26 Uniprot:Q5RF26
Length = 712
Score = 124 (48.7 bits), Expect = 5.6e-05, P = 5.6e-05
Identities = 39/147 (26%), Positives = 74/147 (50%)
Query: 85 IKMNKVHEKRTNMNAYVRFKNLESVEKALEM-NGHVIDEHTIRVD----KALTTTKSN-S 138
IK+ + ++ A++ F + E ++AL N I+ IR++ + +S S
Sbjct: 514 IKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPNARSQPS 573
Query: 139 HSIFIGNIPFXXXXXXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEE--LRK 196
++F+ + L+++F+ G + R++ D+ T KGFG+V+F +EE+ ++
Sbjct: 574 KTLFVKGLSEDTTEETLKESFD--GSV-RARIVTDRETGSSKGFGFVDFNSEEDAKAAKE 630
Query: 197 AFESCGEIDNVRLIRDQHTNIGKG-FG 222
A E GEID ++ D G+G FG
Sbjct: 631 AMED-GEIDGNKVTLDWAKPKGEGGFG 656
Score = 114 (45.2 bits), Expect = 6.2e-07, Sum P(2) = 6.2e-07
Identities = 31/108 (28%), Positives = 54/108 (50%)
Query: 95 TNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKAL---TTTKSNSHSIFIGNIPFXXX 151
T YV F++ E +EKALE+ G + + I+++K + + ++ ++ N+P+
Sbjct: 348 TRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPKGKDSKKERDARTLLAKNLPYKVT 407
Query: 152 XXXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
L++ FE EI RL+ + KG Y+ FK E + K FE
Sbjct: 408 QDELKEVFEDAAEI---RLVSKDGKS--KGIAYIEFKTEADA-EKTFE 449
Score = 70 (29.7 bits), Expect = 6.2e-07, Sum P(2) = 6.2e-07
Identities = 14/36 (38%), Positives = 24/36 (66%)
Query: 191 EEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 226
EE L+++F+ G + R++ D+ T KGFG+V+F
Sbjct: 587 EETLKESFD--GSV-RARIVTDRETGSSKGFGFVDF 619
>UNIPROTKB|F1NCV5 [details] [associations]
symbol:HNRPDL "Heterogeneous nuclear ribonucleoprotein
D-like" species:9031 "Gallus gallus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00700000104347 OMA:QHPPADN
EMBL:AADN02009038 EMBL:AADN02009039 IPI:IPI00822447
Ensembl:ENSGALT00000038016 Uniprot:F1NCV5
Length = 338
Score = 136 (52.9 bits), Expect = 6.3e-07, P = 6.3e-07
Identities = 32/102 (31%), Positives = 53/102 (51%)
Query: 100 YVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTT-KSNSHSIFIGNIPFXXXXXXLRKA 158
+V FK+ SVEK LE+ H +D I +A K +F+G + +++
Sbjct: 111 FVLFKDAASVEKVLELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDTSEEQIKEY 170
Query: 159 FESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFES 200
F + GEI+N+ L D TN +GF ++ + +EE ++K ES
Sbjct: 171 FGAFGEIENIELPMDTKTNERRGFCFITY-TDEEPVKKLLES 211
>WB|WBGene00011059 [details] [associations]
symbol:R06C1.4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 GeneTree:ENSGT00550000074641 HSSP:P33240
EMBL:Z81106 PIR:T23960 RefSeq:NP_493029.1 ProteinModelPortal:O62337
SMR:O62337 STRING:O62337 PaxDb:O62337 EnsemblMetazoa:R06C1.4
GeneID:173076 KEGG:cel:CELE_R06C1.4 UCSC:R06C1.4 CTD:173076
WormBase:R06C1.4 InParanoid:O62337 OMA:RVYLPVD NextBio:878179
Uniprot:O62337
Length = 84
Score = 117 (46.2 bits), Expect = 6.5e-07, P = 6.5e-07
Identities = 25/82 (30%), Positives = 44/82 (53%)
Query: 136 SNSHSIFIGNIPFXXXXXXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELR 195
S S+++GN+P+ + F + G ++NVR++ D+ T +GF +V F +EE +
Sbjct: 3 SQGFSVYVGNVPYQGTEEEIGNYFAAVGHVNNVRIVYDRETGRPRGFAFVEF-SEEAGAQ 61
Query: 196 KAFESC-GEIDNVRLIRDQHTN 216
+A E G N R +R + N
Sbjct: 62 RAVEQLNGVAFNGRNLRVNYAN 83
Score = 89 (36.4 bits), Expect = 0.00092, P = 0.00092
Identities = 16/44 (36%), Positives = 27/44 (61%)
Query: 183 GYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 226
G V ++ EEE+ F + G ++NVR++ D+ T +GF +V F
Sbjct: 11 GNVPYQGTEEEIGNYFAAVGHVNNVRIVYDRETGRPRGFAFVEF 54
>UNIPROTKB|I3LRH2 [details] [associations]
symbol:LOC100737210 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K11294
GeneTree:ENSGT00550000074656 OMA:RLEYSQS RefSeq:XP_003133770.2
Ensembl:ENSSSCT00000032422 GeneID:100519984 KEGG:ssc:100519984
Uniprot:I3LRH2
Length = 724
Score = 125 (49.1 bits), Expect = 4.4e-05, P = 4.4e-05
Identities = 40/147 (27%), Positives = 74/147 (50%)
Query: 85 IKMNKVHEKRTNMNAYVRFKNLESVEKALEM-NGHVIDEHTIRVD----KALTTTKSN-S 138
IK+ + ++ A++ F + E ++AL N I+ IR++ + +S S
Sbjct: 525 IKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPNARSQPS 584
Query: 139 HSIFIGNIPFXXXXXXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEE--LRK 196
++F+ + L+++F+ G I R++ D+ T KGFG+V+F +EE+ ++
Sbjct: 585 KTLFVKGLSEETTEETLKESFD--GSI-RARIVTDRETGSSKGFGFVDFNSEEDAKAAKE 641
Query: 197 AFESCGEIDNVRLIRDQHTNIGKG-FG 222
A E GEID ++ D G+G FG
Sbjct: 642 AMED-GEIDGNKVTLDWAKPKGEGGFG 667
Score = 113 (44.8 bits), Expect = 6.7e-07, Sum P(2) = 6.7e-07
Identities = 47/181 (25%), Positives = 79/181 (43%)
Query: 32 KMALKLKMNPSLTKSKNHALSSVTSMFKPYGEVETVRFRS---VPVADITLPRKACIKMN 88
+MA K K P K K A TS G + + S ++D+ +
Sbjct: 296 EMA-KQKAAPEAKKQKVEATEPTTSFNLFVGNLNFSKSASELKTGISDVFAKNDLAVVDV 354
Query: 89 KVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDK--ALTTTKS-NSHSIFIGN 145
++ R YV F++ E +EKALE+ G + + I+++K + K ++ ++ N
Sbjct: 355 RIGVSRKF--GYVDFESAEDLEKALELTGLKVFGNEIKLEKPKGKDSKKDRDARTLLAKN 412
Query: 146 IPFXXXXXXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCG-EI 204
+P+ L++ FE EI RL+ + KG Y+ FK E + + E G EI
Sbjct: 413 LPYKVTQDELKEVFEDAVEI---RLVSKDGKS--KGIAYIEFKTEADAEKTLEEKQGTEI 467
Query: 205 D 205
D
Sbjct: 468 D 468
Score = 71 (30.1 bits), Expect = 6.7e-07, Sum P(2) = 6.7e-07
Identities = 15/36 (41%), Positives = 24/36 (66%)
Query: 191 EEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 226
EE L+++F+ G I R++ D+ T KGFG+V+F
Sbjct: 598 EETLKESFD--GSI-RARIVTDRETGSSKGFGFVDF 630
>ZFIN|ZDB-GENE-030131-185 [details] [associations]
symbol:hnrnpab "heterogeneous nuclear
ribonucleoprotein A/B" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-185
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104347 InterPro:IPR012956 Pfam:PF08143
EMBL:CU658205 IPI:IPI01023938 Ensembl:ENSDART00000148447
ArrayExpress:F8W4E3 Uniprot:F8W4E3
Length = 366
Score = 136 (52.9 bits), Expect = 7.5e-07, P = 7.5e-07
Identities = 35/115 (30%), Positives = 56/115 (48%)
Query: 85 IKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKSNSHSIFIG 144
IKM+ + R+ ++ FK V+K L H +D I KA+ K IF+G
Sbjct: 126 IKMDP-NTGRSRGFGFILFKEPSGVDKVLAQKEHRLDGRQIDPKKAMAMKKEPVKKIFVG 184
Query: 145 NIPFXXXXXXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
+ +R+ F + GEI+ + L D +N +GF ++ FK EEE ++K E
Sbjct: 185 GLNPETTEERIREYFGAFGEIETIELPMDPKSNKRRGFVFITFK-EEEAVKKILE 238
>UNIPROTKB|F1LRH1 [details] [associations]
symbol:Msi1 "RNA-binding protein Musashi homolog 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005844 "polysome" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:628778 GO:GO:0005634 GO:GO:0005737 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0005844 GeneTree:ENSGT00700000104255
IPI:IPI00202463 Ensembl:ENSRNOT00000001532 ArrayExpress:F1LRH1
Uniprot:F1LRH1
Length = 329
Score = 135 (52.6 bits), Expect = 8.0e-07, P = 8.0e-07
Identities = 33/115 (28%), Positives = 58/115 (50%)
Query: 82 KACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTI--RVD---KALTTTKS 136
K C+ M KR+ +V F + V+K L + H +D TI +V +A +
Sbjct: 14 KECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVT 73
Query: 137 NSHSIFIGNIPFXXXXXXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEE 191
+ IF+G + ++ FE G++D+ L+ D+ TN +GFG+V F++E+
Sbjct: 74 RTKKIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESED 128
>UNIPROTKB|E2RRF5 [details] [associations]
symbol:RBM19 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OMA:VFREKNV
GeneTree:ENSGT00700000104575 EMBL:AAEX03014696
Ensembl:ENSCAFT00000014561 Uniprot:E2RRF5
Length = 968
Score = 141 (54.7 bits), Expect = 8.1e-07, P = 8.1e-07
Identities = 39/131 (29%), Positives = 69/131 (52%)
Query: 86 KMNKVHEKRTNMNAYVRFKNLESVEKAL-EMNGHVIDEHT--IRVDK-----ALTTT--- 134
K NK E + +V ++ E +KAL ++ GHV+D H +R+ + ALT+T
Sbjct: 764 KKNKAGELLSMGFGFVEYRKPEQAQKALKQLQGHVVDSHKLEVRISERATKPALTSTRKK 823
Query: 135 ----KSNSHSIFIGNIPFXXXXXXLRKAFESCGEIDNVRLIRDQH-TNIGKGFGYVNFKA 189
K + I + NIPF +++ F + GE+ VRL + T +GFG+V+F
Sbjct: 824 QVPRKQTTSKILVRNIPFQADKREIQELFSTFGELKTVRLPKKMTGTGTHRGFGFVDFLT 883
Query: 190 EEEELRKAFES 200
+++ ++AF++
Sbjct: 884 KQDA-KRAFQA 893
>TAIR|locus:2160752 [details] [associations]
symbol:AT5G06210 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0009507
"chloroplast" evidence=ISM] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 EMBL:AP002544 HOGENOM:HOG000276232
HSSP:Q61474 EMBL:AY062714 EMBL:AY093349 EMBL:AY087577
IPI:IPI00530408 RefSeq:NP_196239.1 UniGene:At.27256
ProteinModelPortal:Q9FFZ6 SMR:Q9FFZ6 STRING:Q9FFZ6 PaxDb:Q9FFZ6
PRIDE:Q9FFZ6 EnsemblPlants:AT5G06210.1 GeneID:830508
KEGG:ath:AT5G06210 TAIR:At5g06210 InParanoid:Q9FFZ6 OMA:SDRSKGF
PhylomeDB:Q9FFZ6 ProtClustDB:CLSN2686837 ArrayExpress:Q9FFZ6
Genevestigator:Q9FFZ6 Uniprot:Q9FFZ6
Length = 146
Score = 116 (45.9 bits), Expect = 8.5e-07, P = 8.5e-07
Identities = 27/96 (28%), Positives = 48/96 (50%)
Query: 132 TTTKSNSHSIFIGNIPFXXXXXXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEE 191
T + + +FIG + F L +AF CG++ +++ D+ ++ KGFG+V F + +
Sbjct: 27 TQRRGVASKLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASAD 86
Query: 192 EELRKAFESCGEIDNVRLIRDQHT----NIGKGFGY 223
E + E G+ N R I + ++G G GY
Sbjct: 87 EAQKALMEFNGQQLNGRTIFVDYAKAKQSLGGGGGY 122
>UNIPROTKB|B4DTC3 [details] [associations]
symbol:HNRNPD "cDNA FLJ54150, highly similar to
Heterogeneous nuclear ribonucleoprotein D0" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 HOGENOM:HOG000234441 HOVERGEN:HBG002295 EMBL:AC124016
UniGene:Hs.480073 HGNC:HGNC:5036 ChiTaRS:HNRNPD InterPro:IPR012956
Pfam:PF08143 EMBL:AK300149 IPI:IPI01014602 SMR:B4DTC3 STRING:B4DTC3
Ensembl:ENST00000543098 Uniprot:B4DTC3
Length = 303
Score = 134 (52.2 bits), Expect = 8.6e-07, P = 8.6e-07
Identities = 32/101 (31%), Positives = 52/101 (51%)
Query: 100 YVRFKNLESVEKALEMNGHVIDEHTIRVDKALTT-TKSNSHSIFIGNIPFXXXXXXLRKA 158
+V FK ESV+K ++ H ++ I +A TK IF+G + +R+
Sbjct: 90 FVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREY 149
Query: 159 FESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
F GE++++ L D TN +GF ++ FK EEE ++K E
Sbjct: 150 FGGFGEVESIELPMDNKTNKRRGFCFITFK-EEEPVKKIME 189
>UNIPROTKB|G3V6A4 [details] [associations]
symbol:Hnrpd "Protein Hnrpd" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:620365 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 GeneTree:ENSGT00700000104347 KO:K13044
InterPro:IPR012956 Pfam:PF08143 RefSeq:NP_001076009.1
UniGene:Rn.94022 GeneID:79256 KEGG:rno:79256 CTD:79256
NextBio:614748 EMBL:CH474022 Ensembl:ENSRNOT00000003158
Uniprot:G3V6A4
Length = 304
Score = 134 (52.2 bits), Expect = 8.7e-07, P = 8.7e-07
Identities = 32/101 (31%), Positives = 52/101 (51%)
Query: 100 YVRFKNLESVEKALEMNGHVIDEHTIRVDKALTT-TKSNSHSIFIGNIPFXXXXXXLRKA 158
+V FK ESV+K ++ H ++ I +A TK IF+G + +R+
Sbjct: 140 FVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREY 199
Query: 159 FESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
F GE++++ L D TN +GF ++ FK EEE ++K E
Sbjct: 200 FGGFGEVESIELPMDNKTNKRRGFCFITFK-EEEPVKKIME 239
>UNIPROTKB|A5D9H5 [details] [associations]
symbol:HNRPD "Heterogeneous nuclear ribonucleoprotein D"
species:9913 "Bos taurus" [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104347 KO:K13044 CTD:3184 InterPro:IPR012956
Pfam:PF08143 EMBL:DAAA02018245 EMBL:BT030594 IPI:IPI00905408
RefSeq:NP_001091533.1 UniGene:Bt.52882 SMR:A5D9H5 STRING:A5D9H5
Ensembl:ENSBTAT00000056365 GeneID:527471 KEGG:bta:527471
NextBio:20874604 Uniprot:A5D9H5
Length = 306
Score = 134 (52.2 bits), Expect = 8.8e-07, P = 8.8e-07
Identities = 32/101 (31%), Positives = 52/101 (51%)
Query: 100 YVRFKNLESVEKALEMNGHVIDEHTIRVDKALTT-TKSNSHSIFIGNIPFXXXXXXLRKA 158
+V FK ESV+K ++ H ++ I +A TK IF+G + +R+
Sbjct: 142 FVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREY 201
Query: 159 FESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
F GE++++ L D TN +GF ++ FK EEE ++K E
Sbjct: 202 FGGFGEVESIELPMDNKTNKRRGFCFITFK-EEEPVKKIME 241
>MGI|MGI:97286 [details] [associations]
symbol:Ncl "nucleolin" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0001525
"angiogenesis" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=ISO;IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] [GO:0005654
"nucleoplasm" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO;IDA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005938
"cell cortex" evidence=ISO] [GO:0008022 "protein C-terminus
binding" evidence=ISO] [GO:0030529 "ribonucleoprotein complex"
evidence=ISO] [GO:0042162 "telomeric DNA binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:97286 GO:GO:0005938 GO:GO:0005654
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0001525
GO:GO:0003723 GO:GO:0030529 GO:GO:0042162 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K11294 GeneTree:ENSGT00550000074656 CTD:4691
HOGENOM:HOG000113885 OMA:KERDTRT OrthoDB:EOG45MN5J ChiTaRS:NCL
EMBL:X07699 EMBL:AF318184 EMBL:AK050958 EMBL:AK083307 EMBL:AK144894
EMBL:AK161706 EMBL:AK163275 EMBL:BC005460 EMBL:M22089
IPI:IPI00317794 PIR:A29958 RefSeq:NP_035010.3 UniGene:Mm.154378
UniGene:Mm.474153 ProteinModelPortal:P09405 SMR:P09405
IntAct:P09405 STRING:P09405 PhosphoSite:P09405
REPRODUCTION-2DPAGE:P09405 PaxDb:P09405 PRIDE:P09405
Ensembl:ENSMUST00000027438 GeneID:17975 KEGG:mmu:17975
UCSC:uc007bvl.1 InParanoid:P09405 NextBio:292933 PMAP-CutDB:P09405
Bgee:P09405 CleanEx:MM_NCL Genevestigator:P09405
GermOnline:ENSMUSG00000026234 Uniprot:P09405
Length = 707
Score = 139 (54.0 bits), Expect = 9.4e-07, P = 9.4e-07
Identities = 39/129 (30%), Positives = 70/129 (54%)
Query: 99 AYVRFKNLESVEKALEM-NGHVIDEHTIRVDKALTTTKSN-SHSIFIGNIPFXXXXXXLR 156
A++ F + E ++AL N I+ TIR++ + ++S S ++F+ + L+
Sbjct: 527 AFIEFASFEDAKEALNSCNKMEIEGRTIRLELQGSNSRSQPSKTLFVKGLSEDTTEETLK 586
Query: 157 KAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEE--LRKAFESCGEIDNVRLIRDQH 214
++FE G + R++ D+ T KGFG+V+F +EE+ ++A E GEID ++ D
Sbjct: 587 ESFE--GSV-RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMED-GEIDGNKVTLDWA 642
Query: 215 TNIGKG-FG 222
G+G FG
Sbjct: 643 KPKGEGGFG 651
>MGI|MGI:107376 [details] [associations]
symbol:Msi1 "musashi RNA-binding protein 1" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003727 "single-stranded RNA binding"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0005844 "polysome" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009725
"response to hormone stimulus" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:107376 GO:GO:0005634 GO:GO:0005737 GO:GO:0008266
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0009725 GO:GO:0005844
GO:GO:0030855 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K14411
GeneTree:ENSGT00700000104255 CTD:4440 OMA:GLPGSHP OrthoDB:EOG48GW3J
EMBL:D49654 EMBL:AK084019 IPI:IPI00121300 IPI:IPI00462260
RefSeq:NP_032655.1 UniGene:Mm.5077 PDB:1UAW PDB:2MSS PDB:2MST
PDB:2RS2 PDBsum:1UAW PDBsum:2MSS PDBsum:2MST PDBsum:2RS2
ProteinModelPortal:Q61474 SMR:Q61474 STRING:Q61474
PhosphoSite:Q61474 PaxDb:Q61474 PRIDE:Q61474 DNASU:17690
Ensembl:ENSMUST00000150779 GeneID:17690 KEGG:mmu:17690
UCSC:uc008zdu.1 UCSC:uc008zdv.1 InParanoid:Q61474 ChiTaRS:MSI1
EvolutionaryTrace:Q61474 NextBio:292270 Bgee:Q61474 CleanEx:MM_MSI1
Genevestigator:Q61474 GermOnline:ENSMUSG00000054256 Uniprot:Q61474
Length = 362
Score = 135 (52.6 bits), Expect = 9.8e-07, P = 9.8e-07
Identities = 33/115 (28%), Positives = 58/115 (50%)
Query: 82 KACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTI--RVD---KALTTTKS 136
K C+ M KR+ +V F + V+K L + H +D TI +V +A +
Sbjct: 47 KECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVT 106
Query: 137 NSHSIFIGNIPFXXXXXXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEE 191
+ IF+G + ++ FE G++D+ L+ D+ TN +GFG+V F++E+
Sbjct: 107 RTKKIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESED 161
>RGD|628778 [details] [associations]
symbol:Msi1 "musashi RNA-binding protein 1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=NAS] [GO:0003727 "single-stranded RNA binding"
evidence=ISO] [GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005737
"cytoplasm" evidence=IEA;ISO] [GO:0005844 "polysome"
evidence=IEA;ISO] [GO:0008266 "poly(U) RNA binding"
evidence=IEA;ISO] [GO:0009725 "response to hormone stimulus"
evidence=IMP] [GO:0030855 "epithelial cell differentiation"
evidence=IEP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:628778 GO:GO:0005634
GO:GO:0005737 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0009725 GO:GO:0005844 GO:GO:0030855
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
CTD:4440 OrthoDB:EOG48GW3J EMBL:AY043393 IPI:IPI00202463
RefSeq:NP_683688.1 UniGene:Rn.162146 ProteinModelPortal:Q8K3P4
SMR:Q8K3P4 STRING:Q8K3P4 PhosphoSite:Q8K3P4 GeneID:259272
KEGG:rno:259272 NextBio:624325 ArrayExpress:Q8K3P4
Genevestigator:Q8K3P4 Uniprot:Q8K3P4
Length = 362
Score = 135 (52.6 bits), Expect = 9.8e-07, P = 9.8e-07
Identities = 33/115 (28%), Positives = 58/115 (50%)
Query: 82 KACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTI--RVD---KALTTTKS 136
K C+ M KR+ +V F + V+K L + H +D TI +V +A +
Sbjct: 47 KECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVT 106
Query: 137 NSHSIFIGNIPFXXXXXXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEE 191
+ IF+G + ++ FE G++D+ L+ D+ TN +GFG+V F++E+
Sbjct: 107 RTKKIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESED 161
>UNIPROTKB|Q8K3P4 [details] [associations]
symbol:Msi1 "RNA-binding protein Musashi homolog 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:628778 GO:GO:0005634
GO:GO:0005737 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0009725 GO:GO:0005844 GO:GO:0030855
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
CTD:4440 OrthoDB:EOG48GW3J EMBL:AY043393 IPI:IPI00202463
RefSeq:NP_683688.1 UniGene:Rn.162146 ProteinModelPortal:Q8K3P4
SMR:Q8K3P4 STRING:Q8K3P4 PhosphoSite:Q8K3P4 GeneID:259272
KEGG:rno:259272 NextBio:624325 ArrayExpress:Q8K3P4
Genevestigator:Q8K3P4 Uniprot:Q8K3P4
Length = 362
Score = 135 (52.6 bits), Expect = 9.8e-07, P = 9.8e-07
Identities = 33/115 (28%), Positives = 58/115 (50%)
Query: 82 KACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTI--RVD---KALTTTKS 136
K C+ M KR+ +V F + V+K L + H +D TI +V +A +
Sbjct: 47 KECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVT 106
Query: 137 NSHSIFIGNIPFXXXXXXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEE 191
+ IF+G + ++ FE G++D+ L+ D+ TN +GFG+V F++E+
Sbjct: 107 RTKKIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESED 161
>ASPGD|ASPL0000010999 [details] [associations]
symbol:fabM species:162425 "Emericella nidulans"
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0005737 GO:GO:0006417 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:BN001302 EMBL:AACD01000065
GO:GO:0051028 eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 HSSP:P11940
EMBL:U70731 RefSeq:XP_661604.1 ProteinModelPortal:Q5B630 SMR:Q5B630
STRING:Q5B630 PRIDE:Q5B630 EnsemblFungi:CADANIAT00004687
GeneID:2873424 KEGG:ani:AN4000.2 OMA:MIRITYS OrthoDB:EOG4QJVWJ
Uniprot:Q5B630
Length = 732
Score = 94 (38.1 bits), Expect = 1.0e-06, Sum P(2) = 1.0e-06
Identities = 18/61 (29%), Positives = 34/61 (55%)
Query: 127 VDKALTTTKSNSHSIFIGNIPFXXXXXXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYVN 186
V+ TT++ +S S+++G + L + F S G++ ++R+ RD T G+ YVN
Sbjct: 30 VEAPATTSQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVN 89
Query: 187 F 187
+
Sbjct: 90 Y 90
Score = 91 (37.1 bits), Expect = 1.0e-06, Sum P(2) = 1.0e-06
Identities = 19/39 (48%), Positives = 24/39 (61%)
Query: 188 KAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 226
+ E+EE RK FE GEI + L RD +GFG+VNF
Sbjct: 233 EVEDEEFRKLFEKFGEITSATLSRDSEGK-SRGFGFVNF 270
Score = 88 (36.0 bits), Expect = 4.6e-06, Sum P(2) = 4.6e-06
Identities = 27/99 (27%), Positives = 49/99 (49%)
Query: 99 AYVRFKNLESVEKAL-EMNGHVIDEHTIRV-----DKALTTTKSNSHSIFIGNIPFXXXX 152
AYV + + E+AL E+N +I R+ D AL K+ ++FI N+
Sbjct: 86 AYVNYNDTAHGERALDELNYTLIKGKPCRIMWSQRDPALR--KTGQGNVFIKNLDSAIDN 143
Query: 153 XXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEE 191
L F + G I + ++ +D+ + KG+G+V+++ E
Sbjct: 144 KALHDTFAAFGNILSCKVAQDEF-GVSKGYGFVHYETAE 181
>UNIPROTKB|G3V6A5 [details] [associations]
symbol:Hnrpd "Heterogeneous nuclear ribonucleoprotein D,
isoform CRA_c" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:620365 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
GeneTree:ENSGT00700000104347 KO:K13044 InterPro:IPR012956
Pfam:PF08143 RefSeq:NP_001076008.1 UniGene:Rn.94022 GeneID:79256
KEGG:rno:79256 CTD:79256 NextBio:614748 EMBL:CH474022
Ensembl:ENSRNOT00000003173 Uniprot:G3V6A5
Length = 334
Score = 134 (52.2 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 32/101 (31%), Positives = 52/101 (51%)
Query: 100 YVRFKNLESVEKALEMNGHVIDEHTIRVDKALTT-TKSNSHSIFIGNIPFXXXXXXLRKA 158
+V FK ESV+K ++ H ++ I +A TK IF+G + +R+
Sbjct: 121 FVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREY 180
Query: 159 FESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
F GE++++ L D TN +GF ++ FK EEE ++K E
Sbjct: 181 FGGFGEVESIELPMDNKTNKRRGFCFITFK-EEEPVKKIME 220
>UNIPROTKB|F1Q0B0 [details] [associations]
symbol:NCL "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0042162 "telomeric DNA binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0008022
"protein C-terminus binding" evidence=IEA] [GO:0005938 "cell
cortex" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0001525 "angiogenesis" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005938 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0001525 GO:GO:0030529 GO:GO:0042162
KO:K11294 GeneTree:ENSGT00550000074656 CTD:4691 OMA:KERDTRT
EMBL:AAEX03014432 RefSeq:XP_850477.2 Ensembl:ENSCAFT00000017622
GeneID:608445 KEGG:cfa:608445 Uniprot:F1Q0B0
Length = 715
Score = 124 (48.7 bits), Expect = 5.6e-05, P = 5.6e-05
Identities = 39/147 (26%), Positives = 74/147 (50%)
Query: 85 IKMNKVHEKRTNMNAYVRFKNLESVEKALEM-NGHVIDEHTIRVD----KALTTTKSN-S 138
IK+ + ++ A++ F + E ++AL N I+ IR++ + +S S
Sbjct: 517 IKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPNARSQPS 576
Query: 139 HSIFIGNIPFXXXXXXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEE--LRK 196
++F+ + L+++F+ G + R++ D+ T KGFG+V+F +EE+ ++
Sbjct: 577 KTLFVKGLSEDTTEETLKESFD--GSV-RARIVTDRETGSSKGFGFVDFNSEEDAKAAKE 633
Query: 197 AFESCGEIDNVRLIRDQHTNIGKG-FG 222
A E GEID ++ D G+G FG
Sbjct: 634 AMED-GEIDGNKVTLDWAKPKGEGGFG 659
Score = 112 (44.5 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 48/177 (27%), Positives = 80/177 (45%)
Query: 32 KMALKLKMNPSLTKSKNHALSSVTSMFKPYGEVETVRF-RSVP-----VADITLPRKACI 85
+MA K K P K K A TS F + V + F +S P ++D+ +
Sbjct: 288 EMA-KQKAAPEAKKQKVEATEPTTS-FNLF--VGNLNFSKSAPELKTGISDLFAKNDLAV 343
Query: 86 KMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDK--ALTTTKS-NSHSIF 142
++ R YV F++ E +EKALE+ G + + I+++K + K ++ ++
Sbjct: 344 VDVRIGVSRKF--GYVDFESAEDLEKALELTGLKVFGNEIKLEKPKGKDSKKDRDARTLL 401
Query: 143 IGNIPFXXXXXXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
N+P+ L++ FE EI RL+ + KG Y+ FK E + K FE
Sbjct: 402 AKNLPYKVTQDELKEVFEDAVEI---RLVSKDGKS--KGIAYIEFKTEADA-EKTFE 452
Score = 70 (29.7 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 14/36 (38%), Positives = 24/36 (66%)
Query: 191 EEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 226
EE L+++F+ G + R++ D+ T KGFG+V+F
Sbjct: 590 EETLKESFD--GSV-RARIVTDRETGSSKGFGFVDF 622
>WB|WBGene00011156 [details] [associations]
symbol:R09B3.3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0009792 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOGENOM:HOG000276232
GeneTree:ENSGT00550000074641 EMBL:Z81108 HSSP:P33240 PIR:T24068
RefSeq:NP_493023.1 ProteinModelPortal:O45713 SMR:O45713
IntAct:O45713 STRING:O45713 PaxDb:O45713 EnsemblMetazoa:R09B3.3
GeneID:173071 KEGG:cel:CELE_R09B3.3 UCSC:R09B3.3 CTD:173071
WormBase:R09B3.3 InParanoid:O45713 OMA:KRVHIPT NextBio:878159
Uniprot:O45713
Length = 85
Score = 115 (45.5 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 24/73 (32%), Positives = 38/73 (52%)
Query: 140 SIFIGNIPFXXXXXXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
S+++GN PF L F G + NVR++ D+ T +GF +V F EE ++A +
Sbjct: 5 SVYVGNAPFQTTEDDLGNYFSQAGNVSNVRIVCDRETGRPRGFAFVEF-TEEAAAQRAVD 63
Query: 200 SCGEID-NVRLIR 211
+D N R +R
Sbjct: 64 QFNGVDFNGRALR 76
>UNIPROTKB|O45713 [details] [associations]
symbol:R09B3.3 "Protein R09B3.3" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009792 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 GeneTree:ENSGT00550000074641 EMBL:Z81108
HSSP:P33240 PIR:T24068 RefSeq:NP_493023.1 ProteinModelPortal:O45713
SMR:O45713 IntAct:O45713 STRING:O45713 PaxDb:O45713
EnsemblMetazoa:R09B3.3 GeneID:173071 KEGG:cel:CELE_R09B3.3
UCSC:R09B3.3 CTD:173071 WormBase:R09B3.3 InParanoid:O45713
OMA:KRVHIPT NextBio:878159 Uniprot:O45713
Length = 85
Score = 115 (45.5 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 24/73 (32%), Positives = 38/73 (52%)
Query: 140 SIFIGNIPFXXXXXXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
S+++GN PF L F G + NVR++ D+ T +GF +V F EE ++A +
Sbjct: 5 SVYVGNAPFQTTEDDLGNYFSQAGNVSNVRIVCDRETGRPRGFAFVEF-TEEAAAQRAVD 63
Query: 200 SCGEID-NVRLIR 211
+D N R +R
Sbjct: 64 QFNGVDFNGRALR 76
>MGI|MGI:1355299 [details] [associations]
symbol:Hnrpdl "heterogeneous nuclear ribonucleoprotein
D-like" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=ISA] [GO:0003690
"double-stranded DNA binding" evidence=ISO] [GO:0003697
"single-stranded DNA binding" evidence=ISO] [GO:0003723 "RNA
binding" evidence=ISA] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008143 "poly(A)
RNA binding" evidence=ISO] [GO:0010468 "regulation of gene
expression" evidence=ISO] [GO:0016071 "mRNA metabolic process"
evidence=ISA] [GO:0034046 "poly(G) RNA binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1355299 GO:GO:0005634 GO:GO:0005737
GO:GO:0016071 GO:GO:0006355 GO:GO:0000166 GO:GO:0003677
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 eggNOG:COG0724
HOGENOM:HOG000234441 HOVERGEN:HBG002295 HSSP:Q14103 ChiTaRS:HNRPDL
EMBL:AB017020 EMBL:AK011581 EMBL:AK172629 EMBL:BC021374
IPI:IPI00129417 UniGene:Mm.389579 ProteinModelPortal:Q9Z130
SMR:Q9Z130 IntAct:Q9Z130 STRING:Q9Z130 PhosphoSite:Q9Z130
PaxDb:Q9Z130 PRIDE:Q9Z130 InParanoid:Q9Z130 Bgee:Q9Z130
CleanEx:MM_HNRPDL Genevestigator:Q9Z130 Uniprot:Q9Z130
Length = 301
Score = 133 (51.9 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 31/102 (30%), Positives = 53/102 (51%)
Query: 100 YVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTT-KSNSHSIFIGNIPFXXXXXXLRKA 158
+V FK+ SV+K LE+ H +D I +A K +F+G + +++
Sbjct: 74 FVLFKDAASVDKVLELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDTSEEQIKEY 133
Query: 159 FESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFES 200
F + GEI+N+ L D TN +GF ++ + +EE ++K ES
Sbjct: 134 FGAFGEIENIELPMDTKTNERRGFCFITY-TDEEPVKKLLES 174
>RGD|620365 [details] [associations]
symbol:Hnrpd "heterogeneous nuclear ribonucleoprotein D"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000291 "nuclear-transcribed mRNA catabolic
process, exonucleolytic" evidence=TAS] [GO:0003723 "RNA binding"
evidence=ISO;ISS] [GO:0003729 "mRNA binding" evidence=TAS]
[GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006913 "nucleocytoplasmic transport"
evidence=TAS] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA;ISO;ISS] [GO:0042162 "telomeric DNA binding"
evidence=IEA;ISO;ISS] [GO:0043488 "regulation of mRNA stability"
evidence=IEA;ISO] [GO:0048255 "mRNA stabilization" evidence=IDA]
[GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:620365 GO:GO:0005829 GO:GO:0005634 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0006913 GO:GO:0048255 GO:GO:0030529
GO:GO:0042162 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K13044
OrthoDB:EOG49W2FZ GermOnline:ENSRNOG00000002292 InterPro:IPR012956
Pfam:PF08143 EMBL:AB046615 EMBL:AB046616 EMBL:AB046617
EMBL:AB046618 IPI:IPI00201032 IPI:IPI00231383 IPI:IPI00231384
IPI:IPI00231385 RefSeq:NP_001076008.1 RefSeq:NP_001076009.1
RefSeq:NP_001076010.1 RefSeq:NP_077380.2 UniGene:Rn.94022
ProteinModelPortal:Q9JJ54 SMR:Q9JJ54 STRING:Q9JJ54
PhosphoSite:Q9JJ54 PRIDE:Q9JJ54 GeneID:79256 KEGG:rno:79256
UCSC:RGD:620365 CTD:79256 InParanoid:Q9JJ54 NextBio:614748
ArrayExpress:Q9JJ54 Genevestigator:Q9JJ54 GO:GO:0000291
Uniprot:Q9JJ54
Length = 353
Score = 134 (52.2 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 32/101 (31%), Positives = 52/101 (51%)
Query: 100 YVRFKNLESVEKALEMNGHVIDEHTIRVDKALTT-TKSNSHSIFIGNIPFXXXXXXLRKA 158
+V FK ESV+K ++ H ++ I +A TK IF+G + +R+
Sbjct: 140 FVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREY 199
Query: 159 FESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
F GE++++ L D TN +GF ++ FK EEE ++K E
Sbjct: 200 FGGFGEVESIELPMDNKTNKRRGFCFITFK-EEEPVKKIME 239
>UNIPROTKB|Q9JJ54 [details] [associations]
symbol:Hnrnpd "Heterogeneous nuclear ribonucleoprotein D0"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:620365 GO:GO:0005829
GO:GO:0005634 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0006913 GO:GO:0048255 GO:GO:0030529 GO:GO:0042162
HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K13044 OrthoDB:EOG49W2FZ
GermOnline:ENSRNOG00000002292 InterPro:IPR012956 Pfam:PF08143
EMBL:AB046615 EMBL:AB046616 EMBL:AB046617 EMBL:AB046618
IPI:IPI00201032 IPI:IPI00231383 IPI:IPI00231384 IPI:IPI00231385
RefSeq:NP_001076008.1 RefSeq:NP_001076009.1 RefSeq:NP_001076010.1
RefSeq:NP_077380.2 UniGene:Rn.94022 ProteinModelPortal:Q9JJ54
SMR:Q9JJ54 STRING:Q9JJ54 PhosphoSite:Q9JJ54 PRIDE:Q9JJ54
GeneID:79256 KEGG:rno:79256 UCSC:RGD:620365 CTD:79256
InParanoid:Q9JJ54 NextBio:614748 ArrayExpress:Q9JJ54
Genevestigator:Q9JJ54 GO:GO:0000291 Uniprot:Q9JJ54
Length = 353
Score = 134 (52.2 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 32/101 (31%), Positives = 52/101 (51%)
Query: 100 YVRFKNLESVEKALEMNGHVIDEHTIRVDKALTT-TKSNSHSIFIGNIPFXXXXXXLRKA 158
+V FK ESV+K ++ H ++ I +A TK IF+G + +R+
Sbjct: 140 FVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREY 199
Query: 159 FESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
F GE++++ L D TN +GF ++ FK EEE ++K E
Sbjct: 200 FGGFGEVESIELPMDNKTNKRRGFCFITFK-EEEPVKKIME 239
>UNIPROTKB|A6H6Y0 [details] [associations]
symbol:HNRNPD "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043488 "regulation of mRNA stability" evidence=IEA]
[GO:0042162 "telomeric DNA binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0030529 GO:GO:0043488 GO:GO:0042162 HOGENOM:HOG000234441
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104347 OrthoDB:EOG49W2FZ
OMA:PNQNWNQ InterPro:IPR012956 Pfam:PF08143 EMBL:DAAA02018245
UniGene:Bt.52882 EMBL:BC146038 IPI:IPI00696935 SMR:A6H6Y0
STRING:A6H6Y0 Ensembl:ENSBTAT00000018540 InParanoid:A6H6Y0
Uniprot:A6H6Y0
Length = 355
Score = 134 (52.2 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 32/101 (31%), Positives = 52/101 (51%)
Query: 100 YVRFKNLESVEKALEMNGHVIDEHTIRVDKALTT-TKSNSHSIFIGNIPFXXXXXXLRKA 158
+V FK ESV+K ++ H ++ I +A TK IF+G + +R+
Sbjct: 142 FVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREY 201
Query: 159 FESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
F GE++++ L D TN +GF ++ FK EEE ++K E
Sbjct: 202 FGGFGEVESIELPMDNKTNKRRGFCFITFK-EEEPVKKIME 241
>UNIPROTKB|E2RIX2 [details] [associations]
symbol:HNRNPD "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0043488 "regulation of mRNA stability"
evidence=IEA] [GO:0042162 "telomeric DNA binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0043488 GO:GO:0042162
GeneTree:ENSGT00700000104347 KO:K13044 CTD:3184 OMA:PNQNWNQ
InterPro:IPR012956 Pfam:PF08143 EMBL:AAEX03016719
RefSeq:XP_857957.1 Ensembl:ENSCAFT00000038801 GeneID:478450
KEGG:cfa:478450 Uniprot:E2RIX2
Length = 355
Score = 134 (52.2 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 32/101 (31%), Positives = 52/101 (51%)
Query: 100 YVRFKNLESVEKALEMNGHVIDEHTIRVDKALTT-TKSNSHSIFIGNIPFXXXXXXLRKA 158
+V FK ESV+K ++ H ++ I +A TK IF+G + +R+
Sbjct: 142 FVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREY 201
Query: 159 FESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
F GE++++ L D TN +GF ++ FK EEE ++K E
Sbjct: 202 FGGFGEVESIELPMDNKTNKRRGFCFITFK-EEEPVKKIME 241
>UNIPROTKB|Q14103 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IDA;NAS]
[GO:0005634 "nucleus" evidence=IDA;NAS] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=NAS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=NAS] [GO:0042162 "telomeric DNA binding" evidence=IDA]
[GO:0030529 "ribonucleoprotein complex" evidence=IDA] [GO:0006396
"RNA processing" evidence=TAS] [GO:0006401 "RNA catabolic process"
evidence=TAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0005829
"cytosol" evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005730 "nucleolus" evidence=IDA] Reactome:REACT_71
Reactome:REACT_21257 InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AF026126
GO:GO:0005829 GO:GO:0045893 GO:GO:0005654 GO:GO:0000166
Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723
GO:GO:0006401 GO:GO:0048255 GO:GO:0030529 EMBL:CH471057
GO:GO:0000398 GO:GO:0042162 eggNOG:COG0724 HOVERGEN:HBG002295
KO:K13044 EMBL:AC124016 OrthoDB:EOG49W2FZ EMBL:D55671 EMBL:D55672
EMBL:D55673 EMBL:D55674 EMBL:AK292707 EMBL:BC002401 EMBL:BC023977
EMBL:BC026015 EMBL:X03910 EMBL:AF039575 EMBL:M94630 IPI:IPI00028888
IPI:IPI00220683 IPI:IPI00220684 IPI:IPI00220685 PIR:A24016
PIR:A44192 PIR:B48138 RefSeq:NP_001003810.1 RefSeq:NP_002129.2
RefSeq:NP_112737.1 RefSeq:NP_112738.1 UniGene:Hs.480073 PDB:1HD0
PDB:1HD1 PDB:1IQT PDB:1WTB PDB:1X0F PDB:2Z5N PDBsum:1HD0
PDBsum:1HD1 PDBsum:1IQT PDBsum:1WTB PDBsum:1X0F PDBsum:2Z5N
ProteinModelPortal:Q14103 SMR:Q14103 IntAct:Q14103
MINT:MINT-5001251 STRING:Q14103 PhosphoSite:Q14103 DMDM:13124489
SWISS-2DPAGE:Q14103 PaxDb:Q14103 PRIDE:Q14103 DNASU:3184
Ensembl:ENST00000313899 Ensembl:ENST00000352301
Ensembl:ENST00000353341 GeneID:3184 KEGG:hsa:3184 UCSC:uc003hmm.1
UCSC:uc003hmn.1 UCSC:uc003hmo.1 UCSC:uc003hmp.1 CTD:3184
GeneCards:GC04M083274 HGNC:HGNC:5036 HPA:HPA004911 MIM:601324
neXtProt:NX_Q14103 PharmGKB:PA29361 InParanoid:Q14103 OMA:PNQNWNQ
PhylomeDB:Q14103 ChiTaRS:HNRNPD EvolutionaryTrace:Q14103
GenomeRNAi:3184 NextBio:12644 PMAP-CutDB:Q14103 ArrayExpress:Q14103
Bgee:Q14103 Genevestigator:Q14103 GermOnline:ENSG00000138668
InterPro:IPR012956 Pfam:PF08143 Uniprot:Q14103
Length = 355
Score = 134 (52.2 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 32/101 (31%), Positives = 52/101 (51%)
Query: 100 YVRFKNLESVEKALEMNGHVIDEHTIRVDKALTT-TKSNSHSIFIGNIPFXXXXXXLRKA 158
+V FK ESV+K ++ H ++ I +A TK IF+G + +R+
Sbjct: 142 FVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREY 201
Query: 159 FESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
F GE++++ L D TN +GF ++ FK EEE ++K E
Sbjct: 202 FGGFGEVESIELPMDNKTNKRRGFCFITFK-EEEPVKKIME 241
>MGI|MGI:101947 [details] [associations]
symbol:Hnrnpd "heterogeneous nuclear ribonucleoprotein D"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=ISO] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005829 "cytosol" evidence=ISO] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=ISO] [GO:0042162
"telomeric DNA binding" evidence=ISO] [GO:0043488 "regulation of
mRNA stability" evidence=IMP] [GO:0048255 "mRNA stabilization"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:101947 GO:GO:0005829
GO:GO:0005634 GO:GO:0006355 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006351 GO:GO:0003723 GO:GO:0048255 GO:GO:0030529
GO:GO:0043488 GO:GO:0042162 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104347 KO:K13044
OrthoDB:EOG49W2FZ CTD:3184 OMA:PNQNWNQ ChiTaRS:HNRNPD
InterPro:IPR012956 Pfam:PF08143 EMBL:U11273 EMBL:U11274
EMBL:BC011172 EMBL:BC049098 IPI:IPI00230086 IPI:IPI00330958
IPI:IPI00336873 IPI:IPI00336874 PIR:I49069 PIR:I49070
RefSeq:NP_001070733.1 RefSeq:NP_001070734.1 RefSeq:NP_001070735.1
RefSeq:NP_031542.2 UniGene:Mm.150231 ProteinModelPortal:Q60668
SMR:Q60668 DIP:DIP-31411N IntAct:Q60668 STRING:Q60668
PhosphoSite:Q60668 PaxDb:Q60668 PRIDE:Q60668
Ensembl:ENSMUST00000019128 Ensembl:ENSMUST00000172361 GeneID:11991
KEGG:mmu:11991 UCSC:uc008ygt.1 UCSC:uc008ygu.1 InParanoid:Q60668
NextBio:280159 Bgee:Q60668 Genevestigator:Q60668
GermOnline:ENSMUSG00000000568 Uniprot:Q60668
Length = 355
Score = 134 (52.2 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 32/101 (31%), Positives = 52/101 (51%)
Query: 100 YVRFKNLESVEKALEMNGHVIDEHTIRVDKALTT-TKSNSHSIFIGNIPFXXXXXXLRKA 158
+V FK ESV+K ++ H ++ I +A TK IF+G + +R+
Sbjct: 142 FVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREY 201
Query: 159 FESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
F GE++++ L D TN +GF ++ FK EEE ++K E
Sbjct: 202 FGGFGEVESIELPMDNKTNKRRGFCFITFK-EEEPVKKIME 241
>UNIPROTKB|E2QRT0 [details] [associations]
symbol:HNRPDL "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 CTD:9987
GeneTree:ENSGT00700000104347 KO:K13044 OMA:QHPPADN
EMBL:AAEX03016723 RefSeq:XP_858404.1 Ensembl:ENSCAFT00000014224
GeneID:476976 KEGG:cfa:476976 NextBio:20852539 Uniprot:E2QRT0
Length = 420
Score = 135 (52.6 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 48/190 (25%), Positives = 84/190 (44%)
Query: 14 PTQNRNLMSKLKVFLNIWKMALKLKMNPSLTKSKNHALSSVTSMFKPYGEVETVRF--RS 71
P N M + + NI + A K+N S + + + + + + + + R
Sbjct: 113 PADNSAAMEDMNEYSNIEEFAEGSKINASKNQQDDGKMF-IGGLSWDTSKKDLTEYLSRF 171
Query: 72 VPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKAL 131
V D T IK + V R+ +V FK+ SV+K LE+ H +D I +A
Sbjct: 172 GEVVDCT------IKTDPV-TGRSRGFGFVLFKDAASVDKVLELKEHKLDGKLIDPKRAK 224
Query: 132 TTT-KSNSHSIFIGNIPFXXXXXXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAE 190
K +F+G + +++ F + GEI+N+ L D TN +GF ++ + +
Sbjct: 225 ALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITY-TD 283
Query: 191 EEELRKAFES 200
EE ++K ES
Sbjct: 284 EEPVKKLLES 293
>RGD|1309950 [details] [associations]
symbol:Hnrpdl "heterogeneous nuclear ribonucleoprotein D-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1309950 GO:GO:0005634 GO:GO:0005737 GO:GO:0006355 GO:GO:0000166
GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HSSP:Q14103 CTD:9987 KO:K13044
EMBL:BC104683 IPI:IPI00363719 RefSeq:NP_001028868.1
UniGene:Rn.102146 ProteinModelPortal:Q3SWU3 SMR:Q3SWU3
PhosphoSite:Q3SWU3 PRIDE:Q3SWU3 GeneID:305178 KEGG:rno:305178
NextBio:654187 Genevestigator:Q3SWU3 Uniprot:Q3SWU3
Length = 322
Score = 133 (51.9 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 31/102 (30%), Positives = 53/102 (51%)
Query: 100 YVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTT-KSNSHSIFIGNIPFXXXXXXLRKA 158
+V FK+ SV+K LE+ H +D I +A K +F+G + +++
Sbjct: 96 FVLFKDAASVDKVLELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDTSEEQIKEY 155
Query: 159 FESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFES 200
F + GEI+N+ L D TN +GF ++ + +EE ++K ES
Sbjct: 156 FGAFGEIENIELPMDTKTNERRGFCFITY-TDEEPVKKLLES 196
>UNIPROTKB|Q3SWU3 [details] [associations]
symbol:Hnrpdl "Heterogeneous nuclear ribonucleoprotein
D-like" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1309950
GO:GO:0005634 GO:GO:0005737 GO:GO:0006355 GO:GO:0000166
GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HSSP:Q14103 CTD:9987 KO:K13044
EMBL:BC104683 IPI:IPI00363719 RefSeq:NP_001028868.1
UniGene:Rn.102146 ProteinModelPortal:Q3SWU3 SMR:Q3SWU3
PhosphoSite:Q3SWU3 PRIDE:Q3SWU3 GeneID:305178 KEGG:rno:305178
NextBio:654187 Genevestigator:Q3SWU3 Uniprot:Q3SWU3
Length = 322
Score = 133 (51.9 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 31/102 (30%), Positives = 53/102 (51%)
Query: 100 YVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTT-KSNSHSIFIGNIPFXXXXXXLRKA 158
+V FK+ SV+K LE+ H +D I +A K +F+G + +++
Sbjct: 96 FVLFKDAASVDKVLELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDTSEEQIKEY 155
Query: 159 FESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFES 200
F + GEI+N+ L D TN +GF ++ + +EE ++K ES
Sbjct: 156 FGAFGEIENIELPMDTKTNERRGFCFITY-TDEEPVKKLLES 196
>ZFIN|ZDB-GENE-040426-2717 [details] [associations]
symbol:hnrpdl "heterogeneous nuclear
ribonucleoprotein D-like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-040426-2717
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295 HSSP:Q14103
CTD:9987 GeneTree:ENSGT00700000104347 KO:K13044 OMA:QHPPADN
OrthoDB:EOG49W2FZ EMBL:CR847788 EMBL:BC055525 IPI:IPI00500216
RefSeq:NP_998557.1 UniGene:Dr.75234 SMR:Q7SXN2 STRING:Q7SXN2
Ensembl:ENSDART00000020631 GeneID:406701 KEGG:dre:406701
InParanoid:Q7SXN2 NextBio:20818224 Uniprot:Q7SXN2
Length = 296
Score = 131 (51.2 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 34/102 (33%), Positives = 53/102 (51%)
Query: 100 YVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTT-KSNSHSIFIGNIPFXXXXXXLRKA 158
+V FK+ ESV++ LE+ H +D I +A K +F+G + LR+
Sbjct: 75 FVLFKDAESVDRVLELTEHKLDGKLIDPKRAKAIKGKEPPKKVFVGGLSPDITEEQLREY 134
Query: 159 FESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFES 200
F GEI+++ L D TN +GF +V F A EE ++K E+
Sbjct: 135 FGVYGEIESIELPTDTKTNERRGFCFVTF-ALEEPVQKLLEN 175
>UNIPROTKB|F1N2T0 [details] [associations]
symbol:HNRPDL "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104347
OMA:QHPPADN EMBL:DAAA02018246 IPI:IPI00697542 UniGene:Bt.23277
PRIDE:F1N2T0 Ensembl:ENSBTAT00000019699 ArrayExpress:F1N2T0
Uniprot:F1N2T0
Length = 420
Score = 133 (51.9 bits), Expect = 2.2e-06, P = 2.2e-06
Identities = 31/102 (30%), Positives = 53/102 (51%)
Query: 100 YVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTT-KSNSHSIFIGNIPFXXXXXXLRKA 158
+V FK+ SV+K LE+ H +D I +A K +F+G + +++
Sbjct: 193 FVLFKDAASVDKVLELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDTSEEQIKEY 252
Query: 159 FESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFES 200
F + GEI+N+ L D TN +GF ++ + +EE ++K ES
Sbjct: 253 FGAFGEIENIELPMDTKTNERRGFCFITY-TDEEPVKKLLES 293
>UNIPROTKB|O14979 [details] [associations]
symbol:HNRPDL "Heterogeneous nuclear ribonucleoprotein
D-like" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003690
"double-stranded DNA binding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0008143 "poly(A)
RNA binding" evidence=IDA] [GO:0034046 "poly(G) RNA binding"
evidence=IDA] [GO:0005681 "spliceosomal complex" evidence=NAS]
[GO:0006396 "RNA processing" evidence=NAS] [GO:0010468 "regulation
of gene expression" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:D89678 GO:GO:0005634 GO:GO:0005737 GO:GO:0006355 GO:GO:0000166
GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0005681
GO:GO:0003723 GO:GO:0006396 GO:GO:0003690 GO:GO:0003697
GO:GO:0010468 GO:GO:0034046 eggNOG:COG0724 GO:GO:0008143
HOGENOM:HOG000234441 HOVERGEN:HBG002295 HSSP:Q14103 CTD:9987
KO:K13044 EMBL:AB017019 EMBL:D89092 EMBL:AB066484 EMBL:CR407623
EMBL:AC124016 EMBL:AB017018 EMBL:BC007392 EMBL:BC011714
EMBL:BC071944 EMBL:AY453824 IPI:IPI00011274 IPI:IPI00045498
IPI:IPI00845282 PIR:JW0079 RefSeq:NP_001193929.1 RefSeq:NP_112740.1
UniGene:Hs.527105 UniGene:Hs.731516 ProteinModelPortal:O14979
SMR:O14979 IntAct:O14979 STRING:O14979 PhosphoSite:O14979
PaxDb:O14979 PRIDE:O14979 DNASU:9987 Ensembl:ENST00000295470
Ensembl:ENST00000349655 Ensembl:ENST00000502762 GeneID:9987
KEGG:hsa:9987 UCSC:uc003hmr.3 GeneCards:GC04M083343 HGNC:HGNC:5037
MIM:607137 neXtProt:NX_O14979 PharmGKB:PA29362 InParanoid:O14979
OMA:QHPPADN OrthoDB:EOG49W2FZ PhylomeDB:O14979 ChiTaRS:HNRPDL
GenomeRNAi:9987 NextBio:37714 ArrayExpress:O14979 Bgee:O14979
CleanEx:HS_HNRPDL Genevestigator:O14979 Uniprot:O14979
Length = 420
Score = 133 (51.9 bits), Expect = 2.2e-06, P = 2.2e-06
Identities = 31/102 (30%), Positives = 53/102 (51%)
Query: 100 YVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTT-KSNSHSIFIGNIPFXXXXXXLRKA 158
+V FK+ SV+K LE+ H +D I +A K +F+G + +++
Sbjct: 193 FVLFKDAASVDKVLELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDTSEEQIKEY 252
Query: 159 FESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFES 200
F + GEI+N+ L D TN +GF ++ + +EE ++K ES
Sbjct: 253 FGAFGEIENIELPMDTKTNERRGFCFITY-TDEEPVKKLLES 293
>TAIR|locus:2076096 [details] [associations]
symbol:GRP4 "glycine-rich RNA-binding protein 4"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS;IDA]
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0003690
"double-stranded DNA binding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0006970 "response
to osmotic stress" evidence=IMP] [GO:0009409 "response to cold"
evidence=IEP] [GO:0009414 "response to water deprivation"
evidence=IEP] [GO:0009651 "response to salt stress" evidence=IMP]
[GO:0006364 "rRNA processing" evidence=RCA] [GO:0009664 "plant-type
cell wall organization" evidence=RCA] [GO:0042545 "cell wall
modification" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005739
EMBL:CP002686 GO:GO:0000166 GO:GO:0009651 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0003690 GO:GO:0003697 EMBL:AP001297
eggNOG:COG0724 HOGENOM:HOG000276232 HSSP:Q14103
ProtClustDB:PLN03134 EMBL:AY070755 EMBL:AY097374 EMBL:AY085838
IPI:IPI00523873 RefSeq:NP_189025.1 RefSeq:NP_850629.1
UniGene:At.8272 ProteinModelPortal:Q9LIS2 SMR:Q9LIS2 STRING:Q9LIS2
PaxDb:Q8LDS0 PRIDE:Q9LIS2 EnsemblPlants:AT3G23830.1
EnsemblPlants:AT3G23830.2 GeneID:821966 KEGG:ath:AT3G23830
GeneFarm:3951 TAIR:At3g23830 InParanoid:Q9LIS2 OMA:CEDSANN
PhylomeDB:Q9LIS2 Genevestigator:Q9LIS2 Uniprot:Q9LIS2
Length = 136
Score = 112 (44.5 bits), Expect = 2.4e-06, P = 2.4e-06
Identities = 26/85 (30%), Positives = 42/85 (49%)
Query: 127 VDKALTTTKSNSHSIFIGNIPFXXXXXXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYVN 186
V L + + S +F+G + + L++AF S GE+ +I D+ T +GFG+V+
Sbjct: 23 VTSMLGSLRYMSSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVS 82
Query: 187 FKAEEEELRKAFESCGEIDNVRLIR 211
F E+ E G+ N R IR
Sbjct: 83 FSCEDSANNAIKEMDGKELNGRQIR 107
>UNIPROTKB|Q5ZME1 [details] [associations]
symbol:HNRNPA2B1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0043047 "single-stranded telomeric DNA binding"
evidence=IEA] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=IEA] [GO:0050658 "RNA transport"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0097157 "pre-mRNA intronic binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0097157 GO:GO:0048025 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000234442 OrthoDB:EOG4HQDKF CTD:3181
GeneTree:ENSGT00700000104376 KO:K13158 OMA:HYSARTS EMBL:AC140791
EMBL:AJ719443 IPI:IPI00651336 RefSeq:NP_001026156.1
UniGene:Gga.22131 SMR:Q5ZME1 IntAct:Q5ZME1 STRING:Q5ZME1
Ensembl:ENSGALT00000017975 GeneID:420627 KEGG:gga:420627
InParanoid:Q5ZME1 NextBio:20823513 Uniprot:Q5ZME1
Length = 349
Score = 131 (51.2 bits), Expect = 2.7e-06, P = 2.7e-06
Identities = 31/111 (27%), Positives = 52/111 (46%)
Query: 84 CIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKSN---SH- 139
C+ M KR+ +V F ++ V+ A+ H ID + +A+ +S +H
Sbjct: 46 CVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHTIDGRVVEPKRAVAREESGKPGAHV 105
Query: 140 ---SIFIGNIPFXXXXXXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 187
+F+G I LR FE G+ID + +I D+ + +GFG+V F
Sbjct: 106 TVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTF 156
>UNIPROTKB|F1NU40 [details] [associations]
symbol:NCL "Nucleolin" species:9031 "Gallus gallus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0001525
"angiogenesis" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005938 "cell cortex" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0042162 "telomeric
DNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005938
GO:GO:0005654 GO:GO:0005730 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0042162
GeneTree:ENSGT00550000074656 IPI:IPI00577202 OMA:ENAMEIR
EMBL:AADN02020638 EMBL:AADN02020639 Ensembl:ENSGALT00000012486
ArrayExpress:F1NU40 Uniprot:F1NU40
Length = 691
Score = 135 (52.6 bits), Expect = 2.8e-06, P = 2.8e-06
Identities = 47/189 (24%), Positives = 87/189 (46%)
Query: 32 KMALKLKMNPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVH 91
K + K P K K +S S+F T + + A K +++++V
Sbjct: 258 KKEMANKSAPEAKKKKTETPASAFSLFVK-NLTPTKDYEELRTAIKEFFGKKNLQVSEVR 316
Query: 92 EKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALT--TTKSN-----SHSIFIG 144
+ YV F + E ++KAL++NG + I+++KA + + K N + ++F+
Sbjct: 317 IGSSKRFGYVDFLSAEDMDKALQLNGKKLMGLEIKLEKAKSKESLKENKKERDARTLFVK 376
Query: 145 NIPFXXXXXXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCG-E 203
N+P+ ++ FE+ E VRL+ ++ + KG Y+ FK E E + E G E
Sbjct: 377 NLPYRVTEDEMKNVFENALE---VRLVLNKEGS-SKGMAYIEFKTEAEAEKALEEKQGTE 432
Query: 204 IDNVRLIRD 212
+D ++ D
Sbjct: 433 VDGRAMVID 441
Score = 117 (46.2 bits), Expect = 0.00035, P = 0.00035
Identities = 43/147 (29%), Positives = 73/147 (49%)
Query: 81 RKAC-IKMNKVHEKRTNMNAYVRFKNLESVEKALEM-NGHVIDEHTIRVD-KALTTTKSN 137
+KA IKM + ++ R A+V F E ++AL N I+ IR++ + + K N
Sbjct: 482 KKATSIKMPQNNQGRPKGYAFVEFPTAEDAKEALNSCNNTEIEGRAIRLEFSSPSWQKGN 541
Query: 138 ----------SHSIFIGNIPFXXXXXXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 187
S ++F+ + LR++FE G I + R++ D+ T KGFG+V+F
Sbjct: 542 MNARGGFNQQSKTLFVRGLSEDTTEETLRESFE--GSI-SARIVTDRDTGSSKGFGFVDF 598
Query: 188 KAEEEE--LRKAFESCGEIDNVRLIRD 212
+ E+ ++A E GEID ++ D
Sbjct: 599 SSPEDAKAAKEAMED-GEIDGNKVTLD 624
>RGD|1310403 [details] [associations]
symbol:Hnrnpa2b1 "heterogeneous nuclear ribonucleoprotein A2/B1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA;ISO]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=IEA;ISO]
[GO:0005730 "nucleolus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA;ISO]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=ISO;ISS] [GO:0043047
"single-stranded telomeric DNA binding" evidence=IEA;ISO]
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=IEA;ISO] [GO:0050658 "RNA transport" evidence=IEA;ISO]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA;ISO]
[GO:0097157 "pre-mRNA intronic binding" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1310403 GO:GO:0005737 GO:GO:0005654 GO:GO:0005730
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0030529 GO:GO:0071013 GO:GO:0050658
eggNOG:COG0724 GO:GO:0043047 HOGENOM:HOG000234442 OrthoDB:EOG4HQDKF
CTD:3181 KO:K13158 EMBL:AB006815 EMBL:AB006816 EMBL:AB006817
EMBL:AB006818 IPI:IPI00212969 IPI:IPI00867934 IPI:IPI00923129
IPI:IPI00923135 RefSeq:NP_001098083.1 UniGene:Rn.231911
ProteinModelPortal:A7VJC2 SMR:A7VJC2 STRING:A7VJC2 PRIDE:A7VJC2
GeneID:362361 KEGG:rno:362361 UCSC:RGD:1310403 HOVERGEN:HBG108415
InParanoid:A7VJC2 NextBio:679650 ArrayExpress:A7VJC2
Genevestigator:A7VJC2 Uniprot:A7VJC2
Length = 353
Score = 131 (51.2 bits), Expect = 2.8e-06, P = 2.8e-06
Identities = 33/122 (27%), Positives = 57/122 (46%)
Query: 84 CIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKSN---SH- 139
C+ M KR+ +V F ++ V+ A+ H ID + +A+ +S +H
Sbjct: 50 CVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHV 109
Query: 140 ---SIFIGNIPFXXXXXXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRK 196
+F+G I LR FE G+ID + +I D+ + +GFG+V F + + + K
Sbjct: 110 TVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFD-DHDPVDK 168
Query: 197 AF 198
F
Sbjct: 169 IF 170
>UNIPROTKB|P15771 [details] [associations]
symbol:NCL "Nucleolin" species:9031 "Gallus gallus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005730 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0000166
GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K11294 EMBL:X17199 EMBL:M21791
IPI:IPI00577202 PIR:S08414 RefSeq:NP_990596.1 UniGene:Gga.3663
ProteinModelPortal:P15771 SMR:P15771 STRING:P15771 PRIDE:P15771
GeneID:396201 KEGG:gga:396201 CTD:4691 HOGENOM:HOG000113885
InParanoid:P15771 NextBio:20816253 Uniprot:P15771
Length = 694
Score = 135 (52.6 bits), Expect = 2.8e-06, P = 2.8e-06
Identities = 47/189 (24%), Positives = 87/189 (46%)
Query: 32 KMALKLKMNPSLTKSKNHALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVH 91
K + K P K K +S S+F T + + A K +++++V
Sbjct: 258 KKEMANKSAPEAKKKKTETPASAFSLFVK-NLTPTKDYEELRTAIKEFFGKKNLQVSEVR 316
Query: 92 EKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALT--TTKSN-----SHSIFIG 144
+ YV F + E ++KAL++NG + I+++KA + + K N + ++F+
Sbjct: 317 IGSSKRFGYVDFLSAEDMDKALQLNGKKLMGLEIKLEKAKSKESLKENKKERDARTLFVK 376
Query: 145 NIPFXXXXXXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCG-E 203
N+P+ ++ FE+ E VRL+ ++ + KG Y+ FK E E + E G E
Sbjct: 377 NLPYRVTEDEMKNVFENALE---VRLVLNKEGS-SKGMAYIEFKTEAEAEKALEEKQGTE 432
Query: 204 IDNVRLIRD 212
+D ++ D
Sbjct: 433 VDGRAMVID 441
Score = 117 (46.2 bits), Expect = 0.00035, P = 0.00035
Identities = 43/147 (29%), Positives = 73/147 (49%)
Query: 81 RKAC-IKMNKVHEKRTNMNAYVRFKNLESVEKALEM-NGHVIDEHTIRVD-KALTTTKSN 137
+KA IKM + ++ R A+V F E ++AL N I+ IR++ + + K N
Sbjct: 482 KKATSIKMPQNNQGRPKGYAFVEFPTAEDAKEALNSCNNTEIEGRAIRLEFSSPSWQKGN 541
Query: 138 ----------SHSIFIGNIPFXXXXXXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 187
S ++F+ + LR++FE G I + R++ D+ T KGFG+V+F
Sbjct: 542 MNARGGFNQQSKTLFVRGLSEDTTEETLRESFE--GSI-SARIVTDRDTGSSKGFGFVDF 598
Query: 188 KAEEEE--LRKAFESCGEIDNVRLIRD 212
+ E+ ++A E GEID ++ D
Sbjct: 599 SSPEDAKAAKEAMED-GEIDGNKVTLD 624
>MGI|MGI:1921361 [details] [associations]
symbol:Rbm19 "RNA binding motif protein 19" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IDA] [GO:0005694 "chromosome"
evidence=IEA] [GO:0005730 "nucleolus" evidence=ISO;IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0007275 "multicellular organismal
development" evidence=IEA] [GO:0040019 "positive regulation of
embryonic development" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:1921361 GO:GO:0007275 GO:GO:0005737 GO:GO:0005694
GO:GO:0005654 GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0040019 eggNOG:COG0724 KO:K14787
HOGENOM:HOG000211156 OMA:VFREKNV GeneTree:ENSGT00700000104575
CTD:9904 HOVERGEN:HBG055637 OrthoDB:EOG4D7Z56 ChiTaRS:RBM19
EMBL:BC025619 EMBL:BC034010 EMBL:AK004657 EMBL:AK053511
IPI:IPI00165762 IPI:IPI00475221 RefSeq:NP_083038.1 UniGene:Mm.41022
PDB:1WHW PDB:1WHX PDB:2CPF PDB:2CPH PDBsum:1WHW PDBsum:1WHX
PDBsum:2CPF PDBsum:2CPH ProteinModelPortal:Q8R3C6 SMR:Q8R3C6
STRING:Q8R3C6 PhosphoSite:Q8R3C6 PaxDb:Q8R3C6 PRIDE:Q8R3C6
Ensembl:ENSMUST00000031590 GeneID:74111 KEGG:mmu:74111
UCSC:uc008zha.1 InParanoid:Q8R3C6 EvolutionaryTrace:Q8R3C6
NextBio:339804 Bgee:Q8R3C6 CleanEx:MM_RBM19 Genevestigator:Q8R3C6
Uniprot:Q8R3C6
Length = 952
Score = 136 (52.9 bits), Expect = 3.2e-06, P = 3.2e-06
Identities = 37/117 (31%), Positives = 62/117 (52%)
Query: 100 YVRFKNLESVEKAL-EMNGHVIDEHT--IRVDK-----ALTTT-------KSNSHSIFIG 144
+V +K E +KAL ++ GH +D H +R+ + ALT+T K + I +
Sbjct: 770 FVEYKKPEQAQKALKQLQGHTVDGHKLEVRISERATKPALTSTRKKQVPKKQTTSKILVR 829
Query: 145 NIPFXXXXXXLRKAFESCGEIDNVRLIRDQH-TNIGKGFGYVNFKAEEEELRKAFES 200
NIPF +R+ F + GE+ VRL + T +GFG+V+F +++ +KAF +
Sbjct: 830 NIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDF-ITKQDAKKAFNA 885
>ZFIN|ZDB-GENE-030826-25 [details] [associations]
symbol:msi2a "musashi homolog 2a (Drosophila)"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-030826-25 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
GeneTree:ENSGT00700000104255 OrthoDB:EOG48GW3J HSSP:Q61474
EMBL:CR931799 EMBL:CR931806 EMBL:BC045335 IPI:IPI00489753
RefSeq:NP_997961.1 UniGene:Dr.32677 SMR:Q7ZW10
Ensembl:ENSDART00000099473 Ensembl:ENSDART00000132096
GeneID:100002680 KEGG:dre:100002680 CTD:100002680 InParanoid:Q7ZW10
OMA:MEADASQ NextBio:20785547 Uniprot:Q7ZW10
Length = 388
Score = 131 (51.2 bits), Expect = 3.4e-06, P = 3.4e-06
Identities = 36/131 (27%), Positives = 66/131 (50%)
Query: 82 KACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTI--RVD---KALTTTKS 136
+ C+ M KR+ ++ F ++ SV+K L H +D TI +V +A +
Sbjct: 48 RECMVMRDPTTKRSRGFGFITFADVSSVDKVLAQPHHELDSKTIDPKVAFPRRAQPKMVT 107
Query: 137 NSHSIFIGNIPFXXXXXXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRK 196
+ IF+G + +++ FE G++++ L+ D+ TN +GFG+V F+ E+ + K
Sbjct: 108 RTKKIFVGGLSASTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFE-NEDIVEK 166
Query: 197 AFE-SCGEIDN 206
E EI+N
Sbjct: 167 VCEIHFHEINN 177
Score = 79 (32.9 bits), Expect = 0.00030, Sum P(2) = 0.00030
Identities = 17/58 (29%), Positives = 29/58 (50%)
Query: 130 ALTTTKSNSHSIFIGNIPFXXXXXXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 187
+L ++ + +FIG + + LR F GEI ++RD T +GFG++ F
Sbjct: 12 SLNDSQHDPGKMFIGGLSWQTSPDSLRDYFCKFGEIRECMVMRDPTTKRSRGFGFITF 69
Score = 77 (32.2 bits), Expect = 0.00030, Sum P(2) = 0.00030
Identities = 13/36 (36%), Positives = 26/36 (72%)
Query: 192 EELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK 227
E++++ FE G++++ L+ D+ TN +GFG+V F+
Sbjct: 124 EDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFE 159
>UNIPROTKB|E1BNB4 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 EMBL:DAAA02036735
EMBL:DAAA02036734 IPI:IPI00715420 ProteinModelPortal:E1BNB4
Ensembl:ENSBTAT00000022412 OMA:VMTESSH Uniprot:E1BNB4
Length = 618
Score = 107 (42.7 bits), Expect = 3.7e-06, Sum P(2) = 3.7e-06
Identities = 34/108 (31%), Positives = 54/108 (50%)
Query: 90 VHEKRTNMNAYVRFKNLESVEKALE-MNGHVIDEHTIRV-----DKALTTTKSNSHSIFI 143
V +R+ AY+ F+ E+AL+ MN VI IR+ D L KS +IFI
Sbjct: 46 VATRRSLGYAYINFQQPADAERALDTMNFEVIKGQPIRIMWSQRDPGLR--KSGVGNIFI 103
Query: 144 GNIPFXXXXXXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEE 191
N+ L F + G I + +++ D+H + +GFG+V+F+ E
Sbjct: 104 KNLEDSIDNKALYDTFSTFGNILSCKVVCDEHGS--RGFGFVHFETHE 149
Score = 69 (29.3 bits), Expect = 3.7e-06, Sum P(2) = 3.7e-06
Identities = 13/38 (34%), Positives = 26/38 (68%)
Query: 190 EEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK 227
+E+ L+ F G++ +V+++RD + +GFG+VNF+
Sbjct: 203 DEQRLQDLFSQFGKMLSVKVMRDDSGH-SRGFGFVNFE 239
>UNIPROTKB|F1LM82 [details] [associations]
symbol:Hnrnpa2b1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1310403 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662 Pfam:PF11627
GeneTree:ENSGT00700000104376 IPI:IPI00923129
Ensembl:ENSRNOT00000015325 ArrayExpress:F1LM82 Uniprot:F1LM82
Length = 312
Score = 129 (50.5 bits), Expect = 3.8e-06, P = 3.8e-06
Identities = 31/111 (27%), Positives = 52/111 (46%)
Query: 84 CIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKSN---SH- 139
C+ M KR+ +V F ++ V+ A+ H ID + +A+ +S +H
Sbjct: 49 CVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHV 108
Query: 140 ---SIFIGNIPFXXXXXXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 187
+F+G I LR FE G+ID + +I D+ + +GFG+V F
Sbjct: 109 TVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTF 159
>UNIPROTKB|Q6GLB5 [details] [associations]
symbol:elavl1 "ELAV-like protein 1" species:8364 "Xenopus
(Silurana) tropicalis" [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0005938 "cell cortex" evidence=ISS]
[GO:0007369 "gastrulation" evidence=ISS] [GO:0008266 "poly(U) RNA
binding" evidence=ISS] [GO:0008298 "intracellular mRNA
localization" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0048255 "mRNA stabilization" evidence=ISS]
[GO:0051259 "protein oligomerization" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005938 GO:GO:0005634 GO:GO:0008266
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0030529 GO:GO:0008298 GO:GO:0007369 eggNOG:COG0724
HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 EMBL:BC074585
RefSeq:NP_001005461.1 UniGene:Str.2596 ProteinModelPortal:Q6GLB5
SMR:Q6GLB5 STRING:Q6GLB5 PRIDE:Q6GLB5 GeneID:448062 KEGG:xtr:448062
Xenbase:XB-GENE-481800 InParanoid:Q6GLB5 Uniprot:Q6GLB5
Length = 326
Score = 92 (37.4 bits), Expect = 4.4e-06, Sum P(2) = 4.4e-06
Identities = 27/102 (26%), Positives = 48/102 (47%)
Query: 100 YVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKS-NSHSIFIGNIPFXXXXXXLRKA 158
Y+ K+ E L NG + TI+V A +++S +++I +P +
Sbjct: 68 YLNAKDAERAINTL--NGLRLQSKTIKVSVARPSSESIKDANLYISGLPRTMTQKDVEDM 125
Query: 159 FESCGEIDNVRLIRDQHTNIGKGFGYVNF--KAEEEELRKAF 198
F G I N R++ DQ T + +G ++ F ++E EE +F
Sbjct: 126 FLPFGRIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASF 167
Score = 86 (35.3 bits), Expect = 2.2e-05, Sum P(2) = 2.2e-05
Identities = 17/55 (30%), Positives = 31/55 (56%)
Query: 140 SIFIGNIPFXXXXXXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF-KAEEEE 193
++ + +P LR F S GE+++ +LIRD+ G+G+VN+ A++ E
Sbjct: 21 NLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDAE 75
Score = 78 (32.5 bits), Expect = 4.4e-06, Sum P(2) = 4.4e-06
Identities = 19/51 (37%), Positives = 32/51 (62%)
Query: 189 AEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYV---NFKVSFTTLSSI 236
A+E L + F G + NV++IRD +TN KGFG+V N++ + ++S+
Sbjct: 255 ADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
>UNIPROTKB|Q2HJ60 [details] [associations]
symbol:HNRNPA2B1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:9913 "Bos taurus" [GO:0030529 "ribonucleoprotein
complex" evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0097157 "pre-mRNA
intronic binding" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] [GO:0050658 "RNA transport"
evidence=IEA] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=IEA] [GO:0043047 "single-stranded
telomeric DNA binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005737 GO:GO:0005654
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0030529 GO:GO:0097157 GO:GO:0048025
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000234442
OrthoDB:EOG4HQDKF EMBL:BC113298 IPI:IPI00695201
RefSeq:NP_001039440.1 UniGene:Bt.48137 ProteinModelPortal:Q2HJ60
SMR:Q2HJ60 STRING:Q2HJ60 PRIDE:Q2HJ60 Ensembl:ENSBTAT00000007527
GeneID:507564 KEGG:bta:507564 CTD:3181 GeneTree:ENSGT00700000104376
KO:K13158 OMA:HYSARTS NextBio:20868121 Uniprot:Q2HJ60
Length = 341
Score = 129 (50.5 bits), Expect = 4.6e-06, P = 4.6e-06
Identities = 31/111 (27%), Positives = 52/111 (46%)
Query: 84 CIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKSN---SH- 139
C+ M KR+ +V F ++ V+ A+ H ID + +A+ +S +H
Sbjct: 38 CVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHV 97
Query: 140 ---SIFIGNIPFXXXXXXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 187
+F+G I LR FE G+ID + +I D+ + +GFG+V F
Sbjct: 98 TVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTF 148
>UNIPROTKB|A8NJ74 [details] [associations]
symbol:RBM34 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005730 "nucleolus" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 KO:K14837 GeneTree:ENSGT00390000011249
CTD:23029 HOVERGEN:HBG052167 HOGENOM:HOG000015414 EMBL:DAAA02061464
EMBL:BC109866 IPI:IPI00906924 RefSeq:NP_001103552.1
UniGene:Bt.46148 Ensembl:ENSBTAT00000057151 GeneID:537542
KEGG:bta:537542 OMA:ASESSSX NextBio:20877156 Uniprot:A8NJ74
Length = 272
Score = 127 (49.8 bits), Expect = 4.6e-06, P = 4.6e-06
Identities = 29/58 (50%), Positives = 40/58 (68%)
Query: 56 SMFKPYGEVETVRFRSVPVADITLPRK-ACIKMNKVHEKRTNMNAYVRFKNLESVEKA 112
S FK YG++E+VRFRS+ A+ TL +K A IK K+H + N+NAYV FK+ + KA
Sbjct: 203 SFFKEYGQIESVRFRSLIPAEGTLSKKLAAIK-RKIHPDQKNINAYVVFKDESAATKA 259
>UNIPROTKB|E9PTI5 [details] [associations]
symbol:E9PTI5 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 IPI:IPI01007589
Ensembl:ENSRNOT00000011480 Uniprot:E9PTI5
Length = 567
Score = 132 (51.5 bits), Expect = 4.8e-06, P = 4.8e-06
Identities = 40/133 (30%), Positives = 69/133 (51%)
Query: 99 AYVRFKNLESVEKALEM-NGHVIDEHTIRVD----KALTTTKSN-SHSIFIGNIPFXXXX 152
A++ F + E ++AL N I+ TIR++ + +S S ++F+ +
Sbjct: 383 AFIEFASFEDAKEALNSCNKMEIEGRTIRLELQGPRGSPNARSQPSKTLFVKGLSEDTTE 442
Query: 153 XXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEE--LRKAFESCGEIDNVRLI 210
L+++FE G + R++ D+ T KGFG+V+F +EE+ ++A E GEID ++
Sbjct: 443 ETLKESFE--GSV-RARIVTDRETGSSKGFGFVDFNSEEDAKTAKEAMED-GEIDGNKVT 498
Query: 211 RDQHTNIGKG-FG 222
D GKG FG
Sbjct: 499 LDWAKPKGKGGFG 511
>UNIPROTKB|F1LNF1 [details] [associations]
symbol:Hnrnpa2b1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1310403
GO:GO:0005730 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0071013 GO:GO:0050658 GO:GO:0043047
GeneTree:ENSGT00700000104376 OMA:HYSARTS IPI:IPI00867934
ProteinModelPortal:F1LNF1 Ensembl:ENSRNOT00000015152
ArrayExpress:F1LNF1 Uniprot:F1LNF1
Length = 352
Score = 129 (50.5 bits), Expect = 4.9e-06, P = 4.9e-06
Identities = 31/111 (27%), Positives = 52/111 (46%)
Query: 84 CIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKSN---SH- 139
C+ M KR+ +V F ++ V+ A+ H ID + +A+ +S +H
Sbjct: 49 CVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHV 108
Query: 140 ---SIFIGNIPFXXXXXXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 187
+F+G I LR FE G+ID + +I D+ + +GFG+V F
Sbjct: 109 TVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTF 159
>UNIPROTKB|F1Q1K6 [details] [associations]
symbol:HNRNPA2B1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 OMA:HYSARTS EMBL:AAEX03009384
Ensembl:ENSCAFT00000004622 Uniprot:F1Q1K6
Length = 353
Score = 129 (50.5 bits), Expect = 4.9e-06, P = 4.9e-06
Identities = 31/111 (27%), Positives = 52/111 (46%)
Query: 84 CIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKSN---SH- 139
C+ M KR+ +V F ++ V+ A+ H ID + +A+ +S +H
Sbjct: 50 CVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHV 109
Query: 140 ---SIFIGNIPFXXXXXXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 187
+F+G I LR FE G+ID + +I D+ + +GFG+V F
Sbjct: 110 TVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTF 160
>UNIPROTKB|P22626 [details] [associations]
symbol:HNRNPA2B1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=IEA] [GO:0097157 "pre-mRNA intronic
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IDA] [GO:0030529 "ribonucleoprotein
complex" evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;TAS] [GO:0006397 "mRNA processing" evidence=IDA]
[GO:0050658 "RNA transport" evidence=IDA] [GO:0043047
"single-stranded telomeric DNA binding" evidence=IDA] [GO:0003723
"RNA binding" evidence=IDA] [GO:0005681 "spliceosomal complex"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0008380
"RNA splicing" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0000398
GO:GO:0071013 GO:GO:0050658 eggNOG:COG0724 GO:GO:0043047
HOVERGEN:HBG002295 HOGENOM:HOG000234442 OrthoDB:EOG4HQDKF
HPA:HPA001666 CTD:3181 KO:K13158 OMA:HYSARTS EMBL:M29064
EMBL:M29065 EMBL:U09123 EMBL:U09120 EMBL:U09121 EMBL:U09122
EMBL:D28877 EMBL:AK289429 IPI:IPI00396378 IPI:IPI00414696
PIR:A56845 RefSeq:NP_002128.1 RefSeq:NP_112533.1 UniGene:Hs.487774
PDB:1X4B PDBsum:1X4B ProteinModelPortal:P22626 SMR:P22626
IntAct:P22626 MINT:MINT-4998934 STRING:P22626 PhosphoSite:P22626
DMDM:133257 REPRODUCTION-2DPAGE:IPI00396378
REPRODUCTION-2DPAGE:IPI00414696 REPRODUCTION-2DPAGE:P22626
SWISS-2DPAGE:P22626 UCD-2DPAGE:P22626 PaxDb:P22626 PRIDE:P22626
Ensembl:ENST00000354667 Ensembl:ENST00000356674
Ensembl:ENST00000360787 GeneID:3181 KEGG:hsa:3181 UCSC:uc003sxr.4
UCSC:uc003sxs.4 GeneCards:GC07M026229 HGNC:HGNC:5033 HPA:CAB012403
MIM:600124 neXtProt:NX_P22626 PharmGKB:PA162391140 PhylomeDB:P22626
ChiTaRS:HNRNPA2B1 EvolutionaryTrace:P22626 GenomeRNAi:3181
NextBio:12622 PMAP-CutDB:P22626 Bgee:P22626 CleanEx:HS_HNRNPA2B1
Genevestigator:P22626 GermOnline:ENSG00000122566 Uniprot:P22626
Length = 353
Score = 129 (50.5 bits), Expect = 4.9e-06, P = 4.9e-06
Identities = 31/111 (27%), Positives = 52/111 (46%)
Query: 84 CIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKSN---SH- 139
C+ M KR+ +V F ++ V+ A+ H ID + +A+ +S +H
Sbjct: 50 CVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHV 109
Query: 140 ---SIFIGNIPFXXXXXXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 187
+F+G I LR FE G+ID + +I D+ + +GFG+V F
Sbjct: 110 TVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTF 160
>UNIPROTKB|Q5RBU8 [details] [associations]
symbol:HNRNPA2B1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:9601 "Pongo abelii" [GO:0030529 "ribonucleoprotein
complex" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005654 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0030529
HOVERGEN:HBG002295 CTD:3181 KO:K13158 EMBL:CR858535
RefSeq:NP_001127331.1 UniGene:Pab.19213 HSSP:P22626
ProteinModelPortal:Q5RBU8 SMR:Q5RBU8 PRIDE:Q5RBU8 GeneID:100174392
KEGG:pon:100174392 InParanoid:Q5RBU8 Uniprot:Q5RBU8
Length = 353
Score = 129 (50.5 bits), Expect = 4.9e-06, P = 4.9e-06
Identities = 31/111 (27%), Positives = 52/111 (46%)
Query: 84 CIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKSN---SH- 139
C+ M KR+ +V F ++ V+ A+ H ID + +A+ +S +H
Sbjct: 50 CVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHV 109
Query: 140 ---SIFIGNIPFXXXXXXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 187
+F+G I LR FE G+ID + +I D+ + +GFG+V F
Sbjct: 110 TVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTF 160
>MGI|MGI:104819 [details] [associations]
symbol:Hnrnpa2b1 "heterogeneous nuclear ribonucleoprotein
A2/B1" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO] [GO:0005634
"nucleus" evidence=IDA] [GO:0005681 "spliceosomal complex"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006397
"mRNA processing" evidence=ISO] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=ISO]
[GO:0043047 "single-stranded telomeric DNA binding" evidence=ISO]
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=IMP;IDA] [GO:0050658 "RNA transport" evidence=ISO]
[GO:0071013 "catalytic step 2 spliceosome" evidence=ISO]
[GO:0097157 "pre-mRNA intronic binding" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:104819 GO:GO:0005737 GO:GO:0005654
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0097157 GO:GO:0050658 GO:GO:0048025
eggNOG:COG0724 GO:GO:0043047 HOVERGEN:HBG002295 OrthoDB:EOG4HQDKF
CTD:3181 GeneTree:ENSGT00700000104376 KO:K13158 OMA:HYSARTS
ChiTaRS:HNRNPA2B1 EMBL:AF406651 EMBL:AF452567 EMBL:AF073990
EMBL:AF073993 EMBL:AK089012 EMBL:AK137214 EMBL:BC059107
EMBL:BC141253 IPI:IPI00405058 IPI:IPI00622847 IPI:IPI00828488
RefSeq:NP_058086.2 RefSeq:NP_872591.1 RefSeq:XP_001473875.2
UniGene:Mm.155896 ProteinModelPortal:O88569 SMR:O88569
IntAct:O88569 STRING:O88569 PhosphoSite:O88569
REPRODUCTION-2DPAGE:IPI00405058 REPRODUCTION-2DPAGE:O88569
SWISS-2DPAGE:O88569 PaxDb:O88569 PRIDE:O88569
Ensembl:ENSMUST00000069949 Ensembl:ENSMUST00000090002
Ensembl:ENSMUST00000114459 GeneID:100045191 GeneID:53379
KEGG:mmu:100045191 KEGG:mmu:53379 UCSC:uc009bxm.1 UCSC:uc009bxn.1
NextBio:458663 Bgee:O88569 CleanEx:MM_HNRNPA2B1
Genevestigator:O88569 GermOnline:ENSMUSG00000004980 Uniprot:O88569
Length = 353
Score = 129 (50.5 bits), Expect = 4.9e-06, P = 4.9e-06
Identities = 31/111 (27%), Positives = 52/111 (46%)
Query: 84 CIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKSN---SH- 139
C+ M KR+ +V F ++ V+ A+ H ID + +A+ +S +H
Sbjct: 50 CVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHV 109
Query: 140 ---SIFIGNIPFXXXXXXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 187
+F+G I LR FE G+ID + +I D+ + +GFG+V F
Sbjct: 110 TVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTF 160
>SGD|S000003391 [details] [associations]
symbol:NSR1 "Nucleolar protein that binds nuclear
localization sequences" species:4932 "Saccharomyces cerevisiae"
[GO:0003723 "RNA binding" evidence=IEA;IDA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0006364 "rRNA processing" evidence=IEA;TAS]
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IEA;IDA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006950 "response to stress"
evidence=IEA] [GO:0000028 "ribosomal small subunit assembly"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 SGD:S000003391 GO:GO:0005739
GO:GO:0005730 GO:GO:0006950 EMBL:BK006941 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0003697 GO:GO:0000028
GO:GO:0006364 eggNOG:COG0724 EMBL:X85807 KO:K11294 OMA:VITDRES
OrthoDB:EOG422DTZ GeneTree:ENSGT00550000074656 EMBL:X57185
EMBL:Z72944 EMBL:Z72946 PIR:A39205 RefSeq:NP_011675.1
ProteinModelPortal:P27476 SMR:P27476 DIP:DIP-5537N IntAct:P27476
MINT:MINT-543806 STRING:P27476 PaxDb:P27476 PeptideAtlas:P27476
EnsemblFungi:YGR159C GeneID:853064 KEGG:sce:YGR159C CYGD:YGR159c
HOGENOM:HOG000113864 NextBio:973004 Genevestigator:P27476
GermOnline:YGR159C Uniprot:P27476
Length = 414
Score = 130 (50.8 bits), Expect = 4.9e-06, P = 4.9e-06
Identities = 45/135 (33%), Positives = 64/135 (47%)
Query: 94 RTNMNAYVRFKNLESVEKAL-EMNGHVIDEHTIRVDKALTTTKSN--------------S 138
R+ YV F+N EKA+ EM G ID I D + + N S
Sbjct: 207 RSRGYGYVDFENKSYAEKAIQEMQGKEIDGRPINCDMSTSKPAGNNDRAKKFGDTPSEPS 266
Query: 139 HSIFIGNIPFXXXXXXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAF 198
++F+GN+ F + + F GE+ +VR+ T KGFGYV F + E+ +KA
Sbjct: 267 DTLFLGNLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQF-SNMEDAKKAL 325
Query: 199 ESC-GE-IDN--VRL 209
++ GE IDN VRL
Sbjct: 326 DALQGEYIDNRPVRL 340
>UNIPROTKB|E2RK48 [details] [associations]
symbol:MSI1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K14411
GeneTree:ENSGT00700000104255 CTD:4440 EMBL:AAEX03014735
RefSeq:XP_854252.2 Ensembl:ENSCAFT00000016345 GeneID:611488
KEGG:cfa:611488 Uniprot:E2RK48
Length = 362
Score = 129 (50.5 bits), Expect = 5.1e-06, P = 5.1e-06
Identities = 32/115 (27%), Positives = 58/115 (50%)
Query: 82 KACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTI--RVD---KALTTTKS 136
K C+ M KR+ +V F + V+K L + H +D TI +V +A +
Sbjct: 47 KECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVT 106
Query: 137 NSHSIFIGNIPFXXXXXXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEE 191
+ IF+G + +++ FE ++D+ L+ D+ TN +GFG+V F++E+
Sbjct: 107 RTKKIFVGGLSVNTTVEDVKQYFEQFEKVDDAMLMFDKTTNRHRGFGFVTFESED 161
>ZFIN|ZDB-GENE-980526-76 [details] [associations]
symbol:elavl3 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 3 (Hu antigen C)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-980526-76 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:P19339 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP OrthoDB:EOG43R3N0
EMBL:CR385086 EMBL:BC065343 IPI:IPI00512421 UniGene:Dr.75060
SMR:Q6P105 STRING:Q6P105 Ensembl:ENSDART00000028610
InParanoid:Q6P105 Uniprot:Q6P105
Length = 359
Score = 93 (37.8 bits), Expect = 5.6e-06, Sum P(2) = 5.6e-06
Identities = 28/111 (25%), Positives = 52/111 (46%)
Query: 90 VHEKRTNMN---AYVRFKNLESVEKALE-MNGHVIDEHTIRVDKALTTTKS-NSHSIFIG 144
V +K T + +V + + +KA+ +NG + TI+V A ++ S ++++
Sbjct: 70 VRDKITGQSLGYGFVNYVDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDANLYVS 129
Query: 145 NIPFXXXXXXLRKAFESCGEIDNVRLIRDQHT-NIGKGFGYVNF-KAEEEE 193
+P + + F G I R++ DQ T I +G G++ F K E E
Sbjct: 130 GLPKTMSQKDMEQLFSQYGRIITSRILVDQVTAGISRGVGFIRFDKRNEAE 180
Score = 77 (32.2 bits), Expect = 5.6e-06, Sum P(2) = 5.6e-06
Identities = 17/37 (45%), Positives = 24/37 (64%)
Query: 188 KAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYV 224
+A+E L + F G + NV++IRD TN KGFG+V
Sbjct: 286 EADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFV 322
>UNIPROTKB|D3K5N7 [details] [associations]
symbol:ELAVL1 "ELAV (Embryonic lethal, abnormal vision,
Drosophila)-like 1" species:9823 "Sus scrofa" [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IEA] [GO:0045727
"positive regulation of translation" evidence=IEA] [GO:0019901
"protein kinase binding" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0045727
GO:GO:0070935 CTD:1994 KO:K13088 OrthoDB:EOG4Z8XWZ
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:RFGGPLH
EMBL:CU929699 EMBL:GU373715 RefSeq:NP_001182263.1 UniGene:Ssc.4516
ProteinModelPortal:D3K5N7 Ensembl:ENSSSCT00000014844
GeneID:100337681 KEGG:ssc:100337681 Uniprot:D3K5N7
Length = 326
Score = 91 (37.1 bits), Expect = 5.7e-06, Sum P(2) = 5.7e-06
Identities = 27/102 (26%), Positives = 47/102 (46%)
Query: 100 YVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKS-NSHSIFIGNIPFXXXXXXLRKA 158
YV K+ E L NG + TI+V A +++ +++I +P +
Sbjct: 68 YVTAKDAERAINTL--NGLRLQSKTIKVSYARPSSEVIKDANLYISGLPRTMTQKDVEDM 125
Query: 159 FESCGEIDNVRLIRDQHTNIGKGFGYVNF--KAEEEELRKAF 198
F G I N R++ DQ T + +G ++ F ++E EE +F
Sbjct: 126 FSPFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSF 167
Score = 86 (35.3 bits), Expect = 2.2e-05, Sum P(2) = 2.2e-05
Identities = 18/55 (32%), Positives = 31/55 (56%)
Query: 140 SIFIGNIPFXXXXXXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF-KAEEEE 193
++ + +P LR F S GEI++ +LIRD+ G+G+VN+ A++ E
Sbjct: 21 NLIVNYLPQNMTQEELRSLFSSIGEIESAKLIRDKVAGHSLGYGFVNYVTAKDAE 75
Score = 78 (32.5 bits), Expect = 5.7e-06, Sum P(2) = 5.7e-06
Identities = 19/51 (37%), Positives = 32/51 (62%)
Query: 189 AEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYV---NFKVSFTTLSSI 236
A+E L + F G + NV++IRD +TN KGFG+V N++ + ++S+
Sbjct: 255 ADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEASMAIASL 305
>UNIPROTKB|Q15717 [details] [associations]
symbol:ELAVL1 "ELAV-like protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IDA;IMP] [GO:0048255
"mRNA stabilization" evidence=IDA;IMP] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0003723 "RNA binding" evidence=IDA]
[GO:0019901 "protein kinase binding" evidence=IPI] [GO:0035925
"mRNA 3'-UTR AU-rich region binding" evidence=IDA] [GO:0045727
"positive regulation of translation" evidence=IDA] [GO:0003729
"mRNA binding" evidence=TAS] [GO:0007275 "multicellular organismal
development" evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
[GO:0016071 "mRNA metabolic process" evidence=TAS]
Reactome:REACT_71 Reactome:REACT_21257 InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0007275 GO:GO:0005829 GO:GO:0010467 GO:GO:0016071
GO:GO:0005654 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0017091 EMBL:CH471139 GO:GO:0045727 eggNOG:COG0724
GO:GO:0070935 HOVERGEN:HBG002295 EMBL:U38175 EMBL:BT009793
EMBL:BC003376 IPI:IPI00940851 RefSeq:NP_001410.2 UniGene:Hs.184492
UniGene:Hs.713744 PDB:3HI9 PDB:4ED5 PDB:4EGL PDB:4FXV PDBsum:3HI9
PDBsum:4ED5 PDBsum:4EGL PDBsum:4FXV ProteinModelPortal:Q15717
SMR:Q15717 IntAct:Q15717 MINT:MINT-5001300 STRING:Q15717
PhosphoSite:Q15717 DMDM:20981691 PaxDb:Q15717 PeptideAtlas:Q15717
PRIDE:Q15717 DNASU:1994 Ensembl:ENST00000407627 GeneID:1994
KEGG:hsa:1994 UCSC:uc002mjb.3 CTD:1994 GeneCards:GC19M008023
HGNC:HGNC:3312 HPA:CAB005256 MIM:603466 neXtProt:NX_Q15717
PharmGKB:PA27740 HOGENOM:HOG000231162 InParanoid:Q15717 KO:K13088
OrthoDB:EOG4Z8XWZ PhylomeDB:Q15717 BindingDB:Q15717
ChEMBL:CHEMBL1250379 EvolutionaryTrace:Q15717 GenomeRNAi:1994
NextBio:8063 ArrayExpress:Q15717 Bgee:Q15717 CleanEx:HS_ELAVL1
Genevestigator:Q15717 GermOnline:ENSG00000066044 TIGRFAMs:TIGR01661
Uniprot:Q15717
Length = 326
Score = 91 (37.1 bits), Expect = 5.7e-06, Sum P(2) = 5.7e-06
Identities = 27/102 (26%), Positives = 47/102 (46%)
Query: 100 YVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKS-NSHSIFIGNIPFXXXXXXLRKA 158
YV K+ E L NG + TI+V A +++ +++I +P +
Sbjct: 68 YVTAKDAERAINTL--NGLRLQSKTIKVSYARPSSEVIKDANLYISGLPRTMTQKDVEDM 125
Query: 159 FESCGEIDNVRLIRDQHTNIGKGFGYVNF--KAEEEELRKAF 198
F G I N R++ DQ T + +G ++ F ++E EE +F
Sbjct: 126 FSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSF 167
Score = 85 (35.0 bits), Expect = 2.9e-05, Sum P(2) = 2.9e-05
Identities = 17/55 (30%), Positives = 31/55 (56%)
Query: 140 SIFIGNIPFXXXXXXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF-KAEEEE 193
++ + +P LR F S GE+++ +LIRD+ G+G+VN+ A++ E
Sbjct: 21 NLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAE 75
Score = 78 (32.5 bits), Expect = 5.7e-06, Sum P(2) = 5.7e-06
Identities = 19/51 (37%), Positives = 32/51 (62%)
Query: 189 AEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYV---NFKVSFTTLSSI 236
A+E L + F G + NV++IRD +TN KGFG+V N++ + ++S+
Sbjct: 255 ADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
>MGI|MGI:1100851 [details] [associations]
symbol:Elavl1 "ELAV (embryonic lethal, abnormal vision)-like
1 (Hu antigen R)" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISO] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0006417 "regulation of translation" evidence=ISO] [GO:0017091
"AU-rich element binding" evidence=ISO] [GO:0019901 "protein kinase
binding" evidence=ISO] [GO:0035925 "mRNA 3'-UTR AU-rich region
binding" evidence=ISO] [GO:0045727 "positive regulation of
translation" evidence=ISO;IMP;IDA] [GO:0048255 "mRNA stabilization"
evidence=ISO;IMP] [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=ISO] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1100851 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
GO:GO:0045727 EMBL:CH466566 eggNOG:COG0724 GO:GO:0070935
HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 EMBL:U65735 EMBL:AK080365
EMBL:U17595 IPI:IPI00108271 PIR:I49144 RefSeq:NP_034615.2
UniGene:Mm.119162 HSSP:P26378 ProteinModelPortal:P70372 SMR:P70372
DIP:DIP-46480N MINT:MINT-4094207 STRING:P70372 PhosphoSite:P70372
PaxDb:P70372 PRIDE:P70372 Ensembl:ENSMUST00000098950 GeneID:15568
KEGG:mmu:15568 GeneTree:ENSGT00560000077064 InParanoid:P70372
OMA:YANRACA ChiTaRS:ELAVL1 NextBio:288542 Bgee:P70372
Genevestigator:P70372 GermOnline:ENSMUSG00000040028 Uniprot:P70372
Length = 326
Score = 91 (37.1 bits), Expect = 5.7e-06, Sum P(2) = 5.7e-06
Identities = 27/102 (26%), Positives = 47/102 (46%)
Query: 100 YVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKS-NSHSIFIGNIPFXXXXXXLRKA 158
YV K+ E L NG + TI+V A +++ +++I +P +
Sbjct: 68 YVTAKDAERAISTL--NGLRLQSKTIKVSYARPSSEVIKDANLYISGLPRTMTQKDVEDM 125
Query: 159 FESCGEIDNVRLIRDQHTNIGKGFGYVNF--KAEEEELRKAF 198
F G I N R++ DQ T + +G ++ F ++E EE +F
Sbjct: 126 FSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSF 167
Score = 85 (35.0 bits), Expect = 2.9e-05, Sum P(2) = 2.9e-05
Identities = 17/55 (30%), Positives = 31/55 (56%)
Query: 140 SIFIGNIPFXXXXXXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF-KAEEEE 193
++ + +P LR F S GE+++ +LIRD+ G+G+VN+ A++ E
Sbjct: 21 NLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAE 75
Score = 78 (32.5 bits), Expect = 5.7e-06, Sum P(2) = 5.7e-06
Identities = 19/51 (37%), Positives = 32/51 (62%)
Query: 189 AEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYV---NFKVSFTTLSSI 236
A+E L + F G + NV++IRD +TN KGFG+V N++ + ++S+
Sbjct: 255 ADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
>RGD|1308649 [details] [associations]
symbol:Elavl1 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 1 (Hu antigen R)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006417 "regulation of
translation" evidence=ISO] [GO:0017091 "AU-rich element binding"
evidence=ISO] [GO:0019901 "protein kinase binding" evidence=ISO]
[GO:0035925 "mRNA 3'-UTR AU-rich region binding" evidence=ISO]
[GO:0045727 "positive regulation of translation" evidence=IEA;ISO]
[GO:0048255 "mRNA stabilization" evidence=ISO] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1308649 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003730 eggNOG:COG0724 HOVERGEN:HBG002295 CTD:1994
HOGENOM:HOG000231162 KO:K13088 OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RFGGPLH EMBL:CH474084
EMBL:BC168972 EMBL:AB212679 IPI:IPI00869767 RefSeq:NP_001102318.1
UniGene:Rn.216517 SMR:B5DF91 STRING:B5DF91
Ensembl:ENSRNOT00000001415 GeneID:363854 KEGG:rno:363854
UCSC:RGD:1308649 NextBio:684342 Genevestigator:B5DF91
Uniprot:B5DF91
Length = 326
Score = 91 (37.1 bits), Expect = 5.7e-06, Sum P(2) = 5.7e-06
Identities = 27/102 (26%), Positives = 47/102 (46%)
Query: 100 YVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKS-NSHSIFIGNIPFXXXXXXLRKA 158
YV K+ E L NG + TI+V A +++ +++I +P +
Sbjct: 68 YVTAKDAERAISTL--NGLRLQSKTIKVSYARPSSEVIKDANLYISGLPRTMTQKDVEDM 125
Query: 159 FESCGEIDNVRLIRDQHTNIGKGFGYVNF--KAEEEELRKAF 198
F G I N R++ DQ T + +G ++ F ++E EE +F
Sbjct: 126 FSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSF 167
Score = 85 (35.0 bits), Expect = 2.9e-05, Sum P(2) = 2.9e-05
Identities = 17/55 (30%), Positives = 31/55 (56%)
Query: 140 SIFIGNIPFXXXXXXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF-KAEEEE 193
++ + +P LR F S GE+++ +LIRD+ G+G+VN+ A++ E
Sbjct: 21 NLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAE 75
Score = 78 (32.5 bits), Expect = 5.7e-06, Sum P(2) = 5.7e-06
Identities = 19/51 (37%), Positives = 32/51 (62%)
Query: 189 AEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYV---NFKVSFTTLSSI 236
A+E L + F G + NV++IRD +TN KGFG+V N++ + ++S+
Sbjct: 255 ADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
>UNIPROTKB|F1PSC4 [details] [associations]
symbol:ELAVL1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RFGGPLH EMBL:AAEX03012469
Ensembl:ENSCAFT00000029161 Uniprot:F1PSC4
Length = 334
Score = 91 (37.1 bits), Expect = 6.2e-06, Sum P(2) = 6.2e-06
Identities = 27/102 (26%), Positives = 47/102 (46%)
Query: 100 YVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKS-NSHSIFIGNIPFXXXXXXLRKA 158
YV K+ E L NG + TI+V A +++ +++I +P +
Sbjct: 76 YVTAKDAERAINTL--NGLRLQSKTIKVSYARPSSEVIKDANLYISGLPRTMTQKDVEDM 133
Query: 159 FESCGEIDNVRLIRDQHTNIGKGFGYVNF--KAEEEELRKAF 198
F G I N R++ DQ T + +G ++ F ++E EE +F
Sbjct: 134 FSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSF 175
Score = 85 (35.0 bits), Expect = 3.1e-05, Sum P(2) = 3.1e-05
Identities = 17/55 (30%), Positives = 31/55 (56%)
Query: 140 SIFIGNIPFXXXXXXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF-KAEEEE 193
++ + +P LR F S GE+++ +LIRD+ G+G+VN+ A++ E
Sbjct: 29 NLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAE 83
Score = 78 (32.5 bits), Expect = 6.2e-06, Sum P(2) = 6.2e-06
Identities = 19/51 (37%), Positives = 32/51 (62%)
Query: 189 AEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYV---NFKVSFTTLSSI 236
A+E L + F G + NV++IRD +TN KGFG+V N++ + ++S+
Sbjct: 263 ADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 313
>ZFIN|ZDB-GENE-040426-1268 [details] [associations]
symbol:msi2b "musashi homolog 2b (Drosophila)"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040426-1268 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
GeneTree:ENSGT00700000104255 HSSP:Q61474 EMBL:BX000438
EMBL:BX510988 EMBL:BX649247 EMBL:CR848815 EMBL:BC055251
IPI:IPI00481779 RefSeq:NP_957403.1 UniGene:Dr.82489 SMR:Q7SXT6
STRING:Q7SXT6 Ensembl:ENSDART00000100194 GeneID:394084
KEGG:dre:394084 CTD:394084 InParanoid:Q7SXT6 OMA:NYISASP
NextBio:20815041 Uniprot:Q7SXT6
Length = 408
Score = 129 (50.5 bits), Expect = 6.4e-06, P = 6.4e-06
Identities = 37/131 (28%), Positives = 65/131 (49%)
Query: 82 KACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTI--RVD---KALTTTKS 136
+ C+ M KR+ +V F + SV+K L H +D TI +V +A +
Sbjct: 48 RECMVMRDPTTKRSRGFGFVTFADAASVDKVLAQPHHELDSKTIDPKVAFPRRAQPKMVT 107
Query: 137 NSHSIFIGNIPFXXXXXXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRK 196
+ IF+G + +++ FE G++++ L+ D+ TN +GFG+V F+ E+ + K
Sbjct: 108 RTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFE-NEDVVEK 166
Query: 197 AFE-SCGEIDN 206
E EI+N
Sbjct: 167 VCEIHFHEINN 177
Score = 81 (33.6 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 17/47 (36%), Positives = 24/47 (51%)
Query: 141 IFIGNIPFXXXXXXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 187
+FIG + + LR F GEI ++RD T +GFG+V F
Sbjct: 23 MFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTF 69
Score = 77 (32.2 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 13/36 (36%), Positives = 26/36 (72%)
Query: 192 EELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK 227
E++++ FE G++++ L+ D+ TN +GFG+V F+
Sbjct: 124 EDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFE 159
>UNIPROTKB|P08199 [details] [associations]
symbol:NCL "Nucleolin" species:10036 "Mesocricetus auratus"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0030529
"ribonucleoprotein complex" evidence=ISS] [GO:0042162 "telomeric
DNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030529 GO:GO:0042162 HOVERGEN:HBG002295 EMBL:M15825
PIR:A27441 PDB:1FJ7 PDB:1FJC PDB:1FJE PDB:1RKJ PDBsum:1FJ7
PDBsum:1FJC PDBsum:1FJE PDBsum:1RKJ ProteinModelPortal:P08199
SMR:P08199 PRIDE:P08199 EvolutionaryTrace:P08199 Uniprot:P08199
Length = 714
Score = 132 (51.5 bits), Expect = 6.6e-06, P = 6.6e-06
Identities = 41/147 (27%), Positives = 76/147 (51%)
Query: 85 IKMNKVHEKRTNMNAYVRFKNLESVEKALEM-NGHVIDEHTIRVD----KALTTTKSN-S 138
IK+ + + ++ A++ F + E ++AL N I+ TIR++ + +S S
Sbjct: 512 IKVPQNQQGKSKGYAFIEFASFEDAKEALNSCNKMEIEGRTIRLELQGPRGSPNARSQPS 571
Query: 139 HSIFIGNIPFXXXXXXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEE--LRK 196
++F+ + L+++FE G + R++ D+ T KGFG+V+F +EE+ ++
Sbjct: 572 KTLFVKGLSEDTTEETLKESFE--GSV-RARIVTDRETGSSKGFGFVDFNSEEDAKAAKE 628
Query: 197 AFESCGEIDNVRLIRDQHTNIGKG-FG 222
A E GEID ++ D G+G FG
Sbjct: 629 AMED-GEIDGNKVTLDWAKPKGEGGFG 654
>UNIPROTKB|B4DVB8 [details] [associations]
symbol:ELAVL1 "ELAV-like protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006417 "regulation of translation"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG002295 UniGene:Hs.184492
UniGene:Hs.713744 HGNC:HGNC:3312 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AC010336 EMBL:AC008975 EMBL:AK301013
IPI:IPI00301936 ProteinModelPortal:B4DVB8 SMR:B4DVB8 IntAct:B4DVB8
STRING:B4DVB8 PRIDE:B4DVB8 Ensembl:ENST00000351593 OMA:RFGGPLH
ArrayExpress:B4DVB8 Bgee:B4DVB8 Uniprot:B4DVB8
Length = 353
Score = 91 (37.1 bits), Expect = 7.3e-06, Sum P(2) = 7.3e-06
Identities = 27/102 (26%), Positives = 47/102 (46%)
Query: 100 YVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKS-NSHSIFIGNIPFXXXXXXLRKA 158
YV K+ E L NG + TI+V A +++ +++I +P +
Sbjct: 95 YVTAKDAERAINTL--NGLRLQSKTIKVSYARPSSEVIKDANLYISGLPRTMTQKDVEDM 152
Query: 159 FESCGEIDNVRLIRDQHTNIGKGFGYVNF--KAEEEELRKAF 198
F G I N R++ DQ T + +G ++ F ++E EE +F
Sbjct: 153 FSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSF 194
Score = 85 (35.0 bits), Expect = 3.7e-05, Sum P(2) = 3.7e-05
Identities = 17/55 (30%), Positives = 31/55 (56%)
Query: 140 SIFIGNIPFXXXXXXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF-KAEEEE 193
++ + +P LR F S GE+++ +LIRD+ G+G+VN+ A++ E
Sbjct: 48 NLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAE 102
Score = 78 (32.5 bits), Expect = 7.3e-06, Sum P(2) = 7.3e-06
Identities = 19/51 (37%), Positives = 32/51 (62%)
Query: 189 AEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYV---NFKVSFTTLSSI 236
A+E L + F G + NV++IRD +TN KGFG+V N++ + ++S+
Sbjct: 282 ADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 332
>UNIPROTKB|Q3ZCE2 [details] [associations]
symbol:ELAVL1 "ELAV (Embryonic lethal, abnormal vision,
Drosophila)-like 1 (Hu antigen R)" species:9913 "Bos taurus"
[GO:0070935 "3'-UTR-mediated mRNA stabilization" evidence=IEA]
[GO:0045727 "positive regulation of translation" evidence=IEA]
[GO:0019901 "protein kinase binding" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0045727 eggNOG:COG0724 GO:GO:0070935
HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064
OMA:RFGGPLH EMBL:DAAA02019508 EMBL:DAAA02019509 EMBL:BC102495
IPI:IPI00703347 RefSeq:NP_001069922.1 UniGene:Bt.49576 SMR:Q3ZCE2
STRING:Q3ZCE2 Ensembl:ENSBTAT00000000805 GeneID:617316
KEGG:bta:617316 InParanoid:Q3ZCE2 NextBio:20900599 Uniprot:Q3ZCE2
Length = 326
Score = 90 (36.7 bits), Expect = 7.7e-06, Sum P(2) = 7.7e-06
Identities = 27/102 (26%), Positives = 47/102 (46%)
Query: 100 YVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKS-NSHSIFIGNIPFXXXXXXLRKA 158
YV K+ E L NG + TI+V A +++ +++I +P +
Sbjct: 68 YVTAKDAERAINTL--NGLRLQSKTIKVSYARPSSEVIKDANLYISGLPRNMTQKDVEDM 125
Query: 159 FESCGEIDNVRLIRDQHTNIGKGFGYVNF--KAEEEELRKAF 198
F G I N R++ DQ T + +G ++ F ++E EE +F
Sbjct: 126 FSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSF 167
Score = 85 (35.0 bits), Expect = 2.9e-05, Sum P(2) = 2.9e-05
Identities = 17/55 (30%), Positives = 31/55 (56%)
Query: 140 SIFIGNIPFXXXXXXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF-KAEEEE 193
++ + +P LR F S GE+++ +LIRD+ G+G+VN+ A++ E
Sbjct: 21 NLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAE 75
Score = 78 (32.5 bits), Expect = 7.7e-06, Sum P(2) = 7.7e-06
Identities = 19/51 (37%), Positives = 32/51 (62%)
Query: 189 AEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYV---NFKVSFTTLSSI 236
A+E L + F G + NV++IRD +TN KGFG+V N++ + ++S+
Sbjct: 255 ADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
>DICTYBASE|DDB_G0270634 [details] [associations]
symbol:DDB_G0270634 "putative splicing regulator"
species:44689 "Dictyostelium discoideum" [GO:0045335 "phagocytic
vesicle" evidence=IDA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0270634 EMBL:AAFI02000005 GO:GO:0045335
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
RefSeq:XP_646268.1 ProteinModelPortal:Q55D63
EnsemblProtists:DDB0233675 GeneID:8617224 KEGG:ddi:DDB_G0270634
InParanoid:Q55D63 OMA:CAFITFS ProtClustDB:CLSZ2497105
Uniprot:Q55D63
Length = 368
Score = 98 (39.6 bits), Expect = 8.2e-06, Sum P(2) = 8.2e-06
Identities = 16/53 (30%), Positives = 31/53 (58%)
Query: 140 SIFIGNIPFXXXXXXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEE 192
++F+G+IP + + F G I ++ +I+D+ TN+ KG ++ F +EE
Sbjct: 19 TVFVGHIPSSMNEEGVSQIFNKFGNILDITIIKDKRTNVSKGCAFITFSTKEE 71
Score = 70 (29.7 bits), Expect = 8.2e-06, Sum P(2) = 8.2e-06
Identities = 14/53 (26%), Positives = 32/53 (60%)
Query: 184 YVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKVSFTTLSSI 236
Y+ F +EEL++ F G + + ++ D++T K FG+V++ + + +++I
Sbjct: 293 YLPFTYGDEELKQLFAPYGNVISSKVFIDKNTQQSKCFGFVSYDNTQSAIAAI 345
>UNIPROTKB|Q9KVI6 [details] [associations]
symbol:VC_0159 "RNA-binding protein" species:243277 "Vibrio
cholerae O1 biovar El Tor str. N16961" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0016070 "RNA metabolic process" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 EMBL:AE003852 GenomeReviews:AE003852_GR
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0016070 HSSP:P33240
OMA:YTGPTMT PIR:D82358 RefSeq:NP_229816.1 ProteinModelPortal:Q9KVI6
DNASU:2614888 GeneID:2614888 KEGG:vch:VC0159 PATRIC:20079354
ProtClustDB:CLSK873887 Uniprot:Q9KVI6
Length = 152
Score = 103 (41.3 bits), Expect = 8.3e-06, Sum P(2) = 8.3e-06
Identities = 20/66 (30%), Positives = 40/66 (60%)
Query: 128 DKALTTTKSNSHSIFIGNIPFXXXXXXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 187
++A +TTK+ +++GN+P+ +++ F GE+ VRL++D+ T +GFG+V
Sbjct: 57 EEASSTTKT----LYVGNLPYKANESHVKELFAEFGEVFAVRLMKDKRTGKRRGFGFVVI 112
Query: 188 KAEEEE 193
A + +
Sbjct: 113 AASQAQ 118
Score = 40 (19.1 bits), Expect = 8.3e-06, Sum P(2) = 8.3e-06
Identities = 12/38 (31%), Positives = 19/38 (50%)
Query: 20 LMSKLKVFLNIWKMAL--KLKMNPSLTKSKNHALSSVT 55
L S + + AL KL +P+L+ S++ SS T
Sbjct: 26 LHSSFAFLIGVVATALICKLSTHPTLSSSEDEEASSTT 63
>TIGR_CMR|VC_0159 [details] [associations]
symbol:VC_0159 "RNA-binding protein" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0003723 "RNA binding" evidence=ISS]
[GO:0016070 "RNA metabolic process" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 EMBL:AE003852 GenomeReviews:AE003852_GR
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0016070 HSSP:P33240
OMA:YTGPTMT PIR:D82358 RefSeq:NP_229816.1 ProteinModelPortal:Q9KVI6
DNASU:2614888 GeneID:2614888 KEGG:vch:VC0159 PATRIC:20079354
ProtClustDB:CLSK873887 Uniprot:Q9KVI6
Length = 152
Score = 103 (41.3 bits), Expect = 8.3e-06, Sum P(2) = 8.3e-06
Identities = 20/66 (30%), Positives = 40/66 (60%)
Query: 128 DKALTTTKSNSHSIFIGNIPFXXXXXXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 187
++A +TTK+ +++GN+P+ +++ F GE+ VRL++D+ T +GFG+V
Sbjct: 57 EEASSTTKT----LYVGNLPYKANESHVKELFAEFGEVFAVRLMKDKRTGKRRGFGFVVI 112
Query: 188 KAEEEE 193
A + +
Sbjct: 113 AASQAQ 118
Score = 40 (19.1 bits), Expect = 8.3e-06, Sum P(2) = 8.3e-06
Identities = 12/38 (31%), Positives = 19/38 (50%)
Query: 20 LMSKLKVFLNIWKMAL--KLKMNPSLTKSKNHALSSVT 55
L S + + AL KL +P+L+ S++ SS T
Sbjct: 26 LHSSFAFLIGVVATALICKLSTHPTLSSSEDEEASSTT 63
>SGD|S000001440 [details] [associations]
symbol:SGN1 "Cytoplasmic RNA-binding protein" species:4932
"Saccharomyces cerevisiae" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0016071 "mRNA metabolic process" evidence=IGI]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 SGD:S000001440 GO:GO:0005737 GO:GO:0016071
GO:GO:0000166 EMBL:BK006942 Gene3D:3.30.70.330 EMBL:X79743
EMBL:Z38062 eggNOG:COG0724 GO:GO:0008143 KO:K14396
GeneTree:ENSGT00390000001517 OrthoDB:EOG44N22T PIR:S48435
RefSeq:NP_012266.1 ProteinModelPortal:P40561 SMR:P40561
DIP:DIP-6566N IntAct:P40561 MINT:MINT-388965 STRING:P40561
PaxDb:P40561 PeptideAtlas:P40561 EnsemblFungi:YIR001C GeneID:854817
KEGG:sce:YIR001C CYGD:YIR001c OMA:TASPPEN NextBio:977657
Genevestigator:P40561 GermOnline:YIR001C Uniprot:P40561
Length = 250
Score = 124 (48.7 bits), Expect = 8.3e-06, P = 8.3e-06
Identities = 41/143 (28%), Positives = 69/143 (48%)
Query: 89 KVHEKRTNMNAYVRFKNLESVEKAL-EMNGHVIDEHTIRVDKALTTTKSNSH-------S 140
KV K T K + E L E+ G + E T +V + L+ + ++H S
Sbjct: 6 KVDAKATLKTEISNNKKNDKQELELDELVGKLSIEGTPQVSQKLSKEEKHAHQLEADSRS 65
Query: 141 IFIGNIPFXXXXXXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE- 199
IF+GNI + F+ CG+I + L+ D++T KG+GY+ F++ KA +
Sbjct: 66 IFVGNITPDVTPEQIEDHFKDCGQIKRITLLYDRNTGTPKGYGYIEFESPAYR-EKALQL 124
Query: 200 SCGEIDNVRL-IRDQHTNIGKGF 221
+ GE+ ++ + + TNI GF
Sbjct: 125 NGGELKGKKIAVSRKRTNI-PGF 146
>FB|FBgn0031883 [details] [associations]
symbol:CG11266 species:7227 "Drosophila melanogaster"
[GO:0005681 "spliceosomal complex" evidence=ISS] [GO:0008380 "RNA
splicing" evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IMP] [GO:0005634 "nucleus"
evidence=IC] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014134
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0071011
GO:GO:0000398 GO:GO:0071013 GO:GO:0000381 HSSP:Q60900
TIGRFAMs:TIGR01622 KO:K13091 OMA:AGWDTEI
GeneTree:ENSGT00690000102089 UniGene:Dm.7322 GeneID:33989
KEGG:dme:Dmel_CG11266 FlyBase:FBgn0031883 ChiTaRS:CG11266
GenomeRNAi:33989 NextBio:786302 EMBL:AY051860 RefSeq:NP_609095.1
RefSeq:NP_723243.1 SMR:Q9VM49 IntAct:Q9VM49 MINT:MINT-745605
STRING:Q9VM49 EnsemblMetazoa:FBtr0089636 EnsemblMetazoa:FBtr0089640
UCSC:CG11266-RA InParanoid:Q9VM49 Uniprot:Q9VM49
Length = 594
Score = 130 (50.8 bits), Expect = 8.7e-06, P = 8.7e-06
Identities = 45/146 (30%), Positives = 71/146 (48%)
Query: 69 FRSV-PVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGH------VID 121
F SV V D+ L I NK KR AY+ F + ESV AL ++G ++
Sbjct: 257 FSSVGKVRDVRL-----ITCNKT--KRFKGIAYIEFDDPESVALALGLSGQRLLGVPIMV 309
Query: 122 EHTI----RVDKALTTTKSNSHS----IFIGNIPFXXXXXXLRKAFESCGEIDNVRLIRD 173
+HT R+ A + SH+ +++G++ F LR FE G+ID ++LI D
Sbjct: 310 QHTQAEKNRLQNAAPAFQPKSHTGPMRLYVGSLHFNITEDMLRGIFEPFGKIDAIQLIMD 369
Query: 174 QHTNIGKGFGYVNFKAEEEELRKAFE 199
T KG+G++ + ++ +KA E
Sbjct: 370 TETGRSKGYGFITYH-NADDAKKALE 394
>UNIPROTKB|G3XAP0 [details] [associations]
symbol:RBM23 "RNA binding motif protein 23, isoform CRA_f"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL132780 EMBL:CH471078 EMBL:AL135998 UniGene:Hs.4997
HGNC:HGNC:20155 ChiTaRS:RBM23 TIGRFAMs:TIGR01622
ProteinModelPortal:G3XAP0 SMR:G3XAP0 Ensembl:ENST00000542016
ArrayExpress:G3XAP0 Bgee:G3XAP0 Uniprot:G3XAP0
Length = 269
Score = 115 (45.5 bits), Expect = 0.00013, P = 0.00013
Identities = 33/122 (27%), Positives = 59/122 (48%)
Query: 91 HEKRTNMNAYVRFKNLESVEKALEMNGH------VIDEHTIRVDKALTTTKSNSHS---- 140
+ +R+ AYV F ++SV A+ + G +I + + L +N
Sbjct: 32 NSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQAEKNRLAAMANNLQKGNGG 91
Query: 141 ---IFIGNIPFXXXXXXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKA 197
+++G++ F LR FE G+IDN+ L++D T KG+G++ F ++ E R+A
Sbjct: 92 PMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITF-SDSECARRA 150
Query: 198 FE 199
E
Sbjct: 151 LE 152
Score = 99 (39.9 bits), Expect = 8.7e-06, Sum P(2) = 8.7e-06
Identities = 19/47 (40%), Positives = 29/47 (61%)
Query: 183 GYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKVS 229
G ++F E+ LR FE G+IDN+ L++D T KG+G++ F S
Sbjct: 98 GSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDS 144
Score = 64 (27.6 bits), Expect = 8.7e-06, Sum P(2) = 8.7e-06
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 155 LRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 187
L F + G++ +VR+I D+++ KG YV F
Sbjct: 12 LEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEF 44
>UNIPROTKB|F1M3H8 [details] [associations]
symbol:F1M3H8 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0032496 GO:GO:0006954
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0070935
GeneTree:ENSGT00700000104255 IPI:IPI00777708
ProteinModelPortal:F1M3H8 PRIDE:F1M3H8 Ensembl:ENSRNOT00000061231
Uniprot:F1M3H8
Length = 194
Score = 120 (47.3 bits), Expect = 9.2e-06, P = 9.2e-06
Identities = 24/115 (20%), Positives = 58/115 (50%)
Query: 84 CIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALT---TTKSNSHS 140
C+ + KR+ +V + N+E + A+ + H +D +T+ + +A++ + + +H+
Sbjct: 36 CVVVVNPQTKRSRCFGFVTYSNVEEADAAMAASPHAVDGNTVELKRAVSREDSARPGAHA 95
Query: 141 ----IFIGNIPFXXXXXXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEE 191
+F+G + L + F G ++ +I D+ + +GFG+V F++ +
Sbjct: 96 KVKKLFVGGLKGDVAEGDLIEHFSQFGAVEKAEIIADKQSGKKRGFGFVYFQSHD 150
>UNIPROTKB|I3LPP8 [details] [associations]
symbol:RBM23 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006397 "mRNA processing" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 OMA:VTERLDG TIGRFAMs:TIGR01622
GeneTree:ENSGT00690000102089 Ensembl:ENSSSCT00000022566
Uniprot:I3LPP8
Length = 423
Score = 115 (45.5 bits), Expect = 0.00030, P = 0.00030
Identities = 33/122 (27%), Positives = 59/122 (48%)
Query: 91 HEKRTNMNAYVRFKNLESVEKALEMNGH------VIDEHTIRVDKALTTTKSNSHS---- 140
+ +R+ AYV F ++SV A+ + G +I + + L +N
Sbjct: 193 NSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQAEKNRLAAMANNLQKGTGG 252
Query: 141 ---IFIGNIPFXXXXXXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKA 197
+++G++ F LR FE G+IDN+ L++D T KG+G++ F ++ E R+A
Sbjct: 253 PMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITF-SDSECARRA 311
Query: 198 FE 199
E
Sbjct: 312 LE 313
Score = 99 (39.9 bits), Expect = 9.3e-06, Sum P(2) = 9.3e-06
Identities = 19/47 (40%), Positives = 29/47 (61%)
Query: 183 GYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKVS 229
G ++F E+ LR FE G+IDN+ L++D T KG+G++ F S
Sbjct: 259 GSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDS 305
Score = 70 (29.7 bits), Expect = 9.3e-06, Sum P(2) = 9.3e-06
Identities = 18/72 (25%), Positives = 36/72 (50%)
Query: 118 HVIDEHTIR--VDKALTTTKSNSHSIFIGNIPFXXXXXXLRKAFESCGEIDNVRLIRDQH 175
H ++ +R VD L+ + ++ ++F + L F + G++ +VR+I D++
Sbjct: 135 HFREKSPVREPVDN-LSPEERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRN 193
Query: 176 TNIGKGFGYVNF 187
+ KG YV F
Sbjct: 194 SRRSKGIAYVEF 205
>UNIPROTKB|B4DHE8 [details] [associations]
symbol:MSI2 "RNA-binding protein Musashi homolog 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOGENOM:HOG000234441 HOVERGEN:HBG002295 UniGene:Hs.658922
HGNC:HGNC:18585 ChiTaRS:MSI2 EMBL:AC005325 EMBL:AC007431
EMBL:AC015883 EMBL:AC091181 EMBL:AK295060 IPI:IPI00910884
SMR:B4DHE8 STRING:B4DHE8 Ensembl:ENST00000416426 UCSC:uc010wnm.1
Uniprot:B4DHE8
Length = 324
Score = 126 (49.4 bits), Expect = 9.3e-06, P = 9.3e-06
Identities = 37/131 (28%), Positives = 65/131 (49%)
Query: 82 KACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTI--RVD---KALTTTKS 136
+ C+ M KR+ +V F + SV+K L H +D TI +V +A +
Sbjct: 26 RECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQPHHELDSKTIDPKVAFPRRAQPKMVT 85
Query: 137 NSHSIFIGNIPFXXXXXXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRK 196
+ IF+G + +++ FE G++++ L+ D+ TN +GFG+V F+ E+ + K
Sbjct: 86 RTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFE-NEDVVEK 144
Query: 197 AFE-SCGEIDN 206
E EI+N
Sbjct: 145 VCEIHFHEINN 155
Score = 81 (33.6 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 17/47 (36%), Positives = 24/47 (51%)
Query: 141 IFIGNIPFXXXXXXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 187
+FIG + + LR F GEI ++RD T +GFG+V F
Sbjct: 1 MFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTF 47
Score = 77 (32.2 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 13/36 (36%), Positives = 26/36 (72%)
Query: 192 EELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK 227
E++++ FE G++++ L+ D+ TN +GFG+V F+
Sbjct: 102 EDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFE 137
>UNIPROTKB|Q96DH6 [details] [associations]
symbol:MSI2 "RNA-binding protein Musashi homolog 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005844 "polysome" evidence=IEA] [GO:0008266
"poly(U) RNA binding" evidence=IEA] [GO:0048864 "stem cell
development" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 KO:K14411 OrthoDB:EOG48GW3J EMBL:BC001526
EMBL:BC017560 EMBL:AK093888 IPI:IPI00073713 IPI:IPI00167806
IPI:IPI00455161 RefSeq:NP_620412.1 RefSeq:NP_733839.1
UniGene:Hs.658922 ProteinModelPortal:Q96DH6 SMR:Q96DH6
IntAct:Q96DH6 STRING:Q96DH6 PhosphoSite:Q96DH6 DMDM:51316513
PaxDb:Q96DH6 PRIDE:Q96DH6 DNASU:124540 Ensembl:ENST00000284073
Ensembl:ENST00000322684 Ensembl:ENST00000579180 GeneID:124540
KEGG:hsa:124540 UCSC:uc002iuz.1 UCSC:uc002iva.3 CTD:124540
GeneCards:GC17P055334 HGNC:HGNC:18585 HPA:CAB022300 MIM:607897
neXtProt:NX_Q96DH6 PharmGKB:PA38590 InParanoid:Q96DH6 OMA:ISDCTIM
PhylomeDB:Q96DH6 ChiTaRS:MSI2 GenomeRNAi:124540 NextBio:81316
ArrayExpress:Q96DH6 Bgee:Q96DH6 CleanEx:HS_MSI2
Genevestigator:Q96DH6 GermOnline:ENSG00000153944 Uniprot:Q96DH6
Length = 328
Score = 126 (49.4 bits), Expect = 9.6e-06, P = 9.6e-06
Identities = 37/131 (28%), Positives = 65/131 (49%)
Query: 82 KACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTI--RVD---KALTTTKS 136
+ C+ M KR+ +V F + SV+K L H +D TI +V +A +
Sbjct: 48 RECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQPHHELDSKTIDPKVAFPRRAQPKMVT 107
Query: 137 NSHSIFIGNIPFXXXXXXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRK 196
+ IF+G + +++ FE G++++ L+ D+ TN +GFG+V F+ E+ + K
Sbjct: 108 RTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFE-NEDVVEK 166
Query: 197 AFE-SCGEIDN 206
E EI+N
Sbjct: 167 VCEIHFHEINN 177
Score = 81 (33.6 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 17/47 (36%), Positives = 24/47 (51%)
Query: 141 IFIGNIPFXXXXXXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 187
+FIG + + LR F GEI ++RD T +GFG+V F
Sbjct: 23 MFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTF 69
Score = 77 (32.2 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 13/36 (36%), Positives = 26/36 (72%)
Query: 192 EELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK 227
E++++ FE G++++ L+ D+ TN +GFG+V F+
Sbjct: 124 EDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFE 159
>UNIPROTKB|F1N9I5 [details] [associations]
symbol:ELAVL1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0019901 "protein kinase binding" evidence=IEA] [GO:0045727
"positive regulation of translation" evidence=IEA] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0045727 GO:GO:0070935
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:RFGGPLH
EMBL:AADN02063542 IPI:IPI00590347 ProteinModelPortal:F1N9I5
Ensembl:ENSGALT00000001029 Uniprot:F1N9I5
Length = 326
Score = 89 (36.4 bits), Expect = 1.0e-05, Sum P(2) = 1.0e-05
Identities = 26/97 (26%), Positives = 45/97 (46%)
Query: 100 YVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKS-NSHSIFIGNIPFXXXXXXLRKA 158
YV K+ E L NG + TI+V A +++ +++I +P +
Sbjct: 68 YVTAKDAERAINTL--NGLRLQSKTIKVSYARPSSEVIKDANLYISGLPRSMTQKDVEDM 125
Query: 159 FESCGEIDNVRLIRDQHTNIGKGFGYVNF--KAEEEE 193
F G I N R++ DQ T + +G ++ F ++E EE
Sbjct: 126 FSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEE 162
Score = 85 (35.0 bits), Expect = 2.9e-05, Sum P(2) = 2.9e-05
Identities = 17/55 (30%), Positives = 31/55 (56%)
Query: 140 SIFIGNIPFXXXXXXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF-KAEEEE 193
++ + +P LR F S GE+++ +LIRD+ G+G+VN+ A++ E
Sbjct: 21 NLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAE 75
Score = 78 (32.5 bits), Expect = 1.0e-05, Sum P(2) = 1.0e-05
Identities = 19/51 (37%), Positives = 32/51 (62%)
Query: 189 AEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYV---NFKVSFTTLSSI 236
A+E L + F G + NV++IRD +TN KGFG+V N++ + ++S+
Sbjct: 255 ADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
>UNIPROTKB|Q86U06 [details] [associations]
symbol:RBM23 "Probable RNA-binding protein 23" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL132780 EMBL:CH471078 eggNOG:COG0724 EMBL:AL135998
EMBL:AF087905 EMBL:AF275678 EMBL:AK001344 EMBL:AL834198
EMBL:BX161440 EMBL:BC002566 EMBL:BC024208 IPI:IPI00168431
IPI:IPI00376960 IPI:IPI00376962 IPI:IPI00376963 IPI:IPI00386141
RefSeq:NP_001070819.1 RefSeq:NP_001070820.1 RefSeq:NP_060577.3
UniGene:Hs.4997 PDB:2CQ4 PDB:2DNZ PDBsum:2CQ4 PDBsum:2DNZ
ProteinModelPortal:Q86U06 SMR:Q86U06 IntAct:Q86U06
MINT:MINT-1382566 STRING:Q86U06 PhosphoSite:Q86U06 DMDM:34925229
PaxDb:Q86U06 PRIDE:Q86U06 DNASU:55147 Ensembl:ENST00000346528
Ensembl:ENST00000359890 Ensembl:ENST00000399922 GeneID:55147
KEGG:hsa:55147 UCSC:uc001whg.3 UCSC:uc001whh.3 UCSC:uc001whi.3
UCSC:uc001whk.1 CTD:55147 GeneCards:GC14M023369 HGNC:HGNC:20155
HPA:HPA004144 neXtProt:NX_Q86U06 PharmGKB:PA134974852
HOVERGEN:HBG057646 InParanoid:Q86U06 OMA:VTERLDG PhylomeDB:Q86U06
ChiTaRS:RBM23 EvolutionaryTrace:Q86U06 GenomeRNAi:55147
NextBio:58862 ArrayExpress:Q86U06 Bgee:Q86U06 CleanEx:HS_RBM23
Genevestigator:Q86U06 GermOnline:ENSG00000100461 TIGRFAMs:TIGR01622
Uniprot:Q86U06
Length = 439
Score = 115 (45.5 bits), Expect = 0.00031, P = 0.00031
Identities = 33/122 (27%), Positives = 59/122 (48%)
Query: 91 HEKRTNMNAYVRFKNLESVEKALEMNGH------VIDEHTIRVDKALTTTKSNSHS---- 140
+ +R+ AYV F ++SV A+ + G +I + + L +N
Sbjct: 202 NSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQAEKNRLAAMANNLQKGNGG 261
Query: 141 ---IFIGNIPFXXXXXXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKA 197
+++G++ F LR FE G+IDN+ L++D T KG+G++ F ++ E R+A
Sbjct: 262 PMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITF-SDSECARRA 320
Query: 198 FE 199
E
Sbjct: 321 LE 322
Score = 99 (39.9 bits), Expect = 1.0e-05, Sum P(2) = 1.0e-05
Identities = 19/47 (40%), Positives = 29/47 (61%)
Query: 183 GYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKVS 229
G ++F E+ LR FE G+IDN+ L++D T KG+G++ F S
Sbjct: 268 GSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDS 314
Score = 70 (29.7 bits), Expect = 1.0e-05, Sum P(2) = 1.0e-05
Identities = 18/72 (25%), Positives = 36/72 (50%)
Query: 118 HVIDEHTIR--VDKALTTTKSNSHSIFIGNIPFXXXXXXLRKAFESCGEIDNVRLIRDQH 175
H ++ +R VD L+ + ++ ++F + L F + G++ +VR+I D++
Sbjct: 144 HFREKSPVREPVDN-LSPEERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRN 202
Query: 176 TNIGKGFGYVNF 187
+ KG YV F
Sbjct: 203 SRRSKGIAYVEF 214
>MGI|MGI:1923876 [details] [associations]
symbol:Msi2 "musashi RNA-binding protein 2" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003727 "single-stranded RNA binding"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005844
"polysome" evidence=IDA] [GO:0008266 "poly(U) RNA binding"
evidence=IDA] [GO:0048864 "stem cell development" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1923876 GO:GO:0005737 GO:GO:0008266
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0005844 eggNOG:COG0724
HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
GeneTree:ENSGT00700000104255 GO:GO:0048864 CTD:124540 ChiTaRS:MSI2
EMBL:AB056102 EMBL:AB056103 EMBL:BK001483 EMBL:AK049637
EMBL:AK049688 EMBL:AK051269 IPI:IPI00120924 IPI:IPI00462899
IPI:IPI00462900 RefSeq:NP_473384.1 UniGene:Mm.400451
UniGene:Mm.428433 UniGene:Mm.474737 ProteinModelPortal:Q920Q6
SMR:Q920Q6 STRING:Q920Q6 PhosphoSite:Q920Q6 PaxDb:Q920Q6
PRIDE:Q920Q6 Ensembl:ENSMUST00000092794 Ensembl:ENSMUST00000107909
GeneID:76626 KEGG:mmu:76626 UCSC:uc007kvn.2 InParanoid:Q920Q6
OMA:ENYISAA NextBio:345476 Bgee:Q920Q6 CleanEx:MM_MSI2
Genevestigator:Q920Q6 GermOnline:ENSMUSG00000069769 Uniprot:Q920Q6
Length = 346
Score = 126 (49.4 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 37/131 (28%), Positives = 65/131 (49%)
Query: 82 KACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTI--RVD---KALTTTKS 136
+ C+ M KR+ +V F + SV+K L H +D TI +V +A +
Sbjct: 48 RECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQPHHELDSKTIDPKVAFPRRAQPKMVT 107
Query: 137 NSHSIFIGNIPFXXXXXXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRK 196
+ IF+G + +++ FE G++++ L+ D+ TN +GFG+V F+ E+ + K
Sbjct: 108 RTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFE-NEDVVEK 166
Query: 197 AFE-SCGEIDN 206
E EI+N
Sbjct: 167 VCEIHFHEINN 177
Score = 81 (33.6 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 17/47 (36%), Positives = 24/47 (51%)
Query: 141 IFIGNIPFXXXXXXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 187
+FIG + + LR F GEI ++RD T +GFG+V F
Sbjct: 23 MFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTF 69
Score = 77 (32.2 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 13/36 (36%), Positives = 26/36 (72%)
Query: 192 EELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK 227
E++++ FE G++++ L+ D+ TN +GFG+V F+
Sbjct: 124 EDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFE 159
>UNIPROTKB|F1SA35 [details] [associations]
symbol:LOC100737421 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 EMBL:FP326688 RefSeq:XP_003480852.1
Ensembl:ENSSSCT00000014862 GeneID:100737421 KEGG:ssc:100737421
OMA:STFGNIV Uniprot:F1SA35
Length = 349
Score = 126 (49.4 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 34/143 (23%), Positives = 62/143 (43%)
Query: 84 CIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALT---TTKSNSH- 139
C+ + KR+ +V F ++ V+ A+ H +D + +A+ + K +H
Sbjct: 50 CVVLRDPSNKRSRGFGFVTFSSVAEVDAAMAARPHSVDGKVVDPKRAVAREESEKPGAHL 109
Query: 140 ---SIFIGNIPFXXXXXXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRK 196
+F+G I LR FE G+ID + +I D+ + +GFG+V F + + + K
Sbjct: 110 AVKKLFVGGIKEDTEEHHLRDYFEKYGKIDTIEIITDRQSGKKRGFGFVTFD-DHDPVDK 168
Query: 197 AFESCGEIDNVRLIRDQHTNIGK 219
+ I H +GK
Sbjct: 169 IV-----LQKYHTINGHHAEVGK 186
>UNIPROTKB|Q48A10 [details] [associations]
symbol:CPS_0338 "RNA-binding protein" species:167879
"Colwellia psychrerythraea 34H" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
eggNOG:COG0724 RefSeq:YP_267104.1 ProteinModelPortal:Q48A10
STRING:Q48A10 GeneID:3519770 KEGG:cps:CPS_0338 PATRIC:21464063
HOGENOM:HOG000269562 BioCyc:CPSY167879:GI48-441-MONOMER
Uniprot:Q48A10
Length = 160
Score = 113 (44.8 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 19/66 (28%), Positives = 40/66 (60%)
Query: 140 SIFIGNIPFXXXXXXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
++++GN+P+ +R+ F G + +VRL++D+HT +GFG+V +++ L KA
Sbjct: 72 TLYVGNLPYRANETSVRELFSEHGSVHSVRLMKDKHTGKRRGFGFVEMASDD--LDKAIS 129
Query: 200 SCGEID 205
+ + +
Sbjct: 130 ALNDTE 135
>TIGR_CMR|CPS_0338 [details] [associations]
symbol:CPS_0338 "RNA-binding protein" species:167879
"Colwellia psychrerythraea 34H" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CP000083 GenomeReviews:CP000083_GR eggNOG:COG0724
RefSeq:YP_267104.1 ProteinModelPortal:Q48A10 STRING:Q48A10
GeneID:3519770 KEGG:cps:CPS_0338 PATRIC:21464063
HOGENOM:HOG000269562 BioCyc:CPSY167879:GI48-441-MONOMER
Uniprot:Q48A10
Length = 160
Score = 113 (44.8 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 19/66 (28%), Positives = 40/66 (60%)
Query: 140 SIFIGNIPFXXXXXXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
++++GN+P+ +R+ F G + +VRL++D+HT +GFG+V +++ L KA
Sbjct: 72 TLYVGNLPYRANETSVRELFSEHGSVHSVRLMKDKHTGKRRGFGFVEMASDD--LDKAIS 129
Query: 200 SCGEID 205
+ + +
Sbjct: 130 ALNDTE 135
>UNIPROTKB|F8VTQ5 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1 IPI:IPI01022641
ProteinModelPortal:F8VTQ5 SMR:F8VTQ5 PRIDE:F8VTQ5
Ensembl:ENST00000551702 ArrayExpress:F8VTQ5 Bgee:F8VTQ5
Uniprot:F8VTQ5
Length = 145
Score = 106 (42.4 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 29/89 (32%), Positives = 43/89 (48%)
Query: 141 IFIGNIPFXXXXXXLRKAFESCGEI-DNVRLIRD-QHTNIGKGF-GYVNFKAEEEELRKA 197
+FIG + F LR FE G + D V R H + K F G + EE LR
Sbjct: 16 LFIGGLSFETTDESLRSHFEQWGTLTDCVDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDY 75
Query: 198 FESCGEIDNVRLIRDQHTNIGKGFGYVNF 226
FE G+I+ + ++ D+ + +GF +V F
Sbjct: 76 FEQYGKIEVIEIMTDRGSGKKRGFAFVTF 104
>UNIPROTKB|J9P972 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104255 EMBL:AAEX03012650 EMBL:AAEX03012651
Ensembl:ENSCAFT00000049246 Uniprot:J9P972
Length = 258
Score = 123 (48.4 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 33/112 (29%), Positives = 52/112 (46%)
Query: 84 CIKMNKVHEKRTNMN---AYVRFKNLESVEKALEMNGHVIDEHTIRV-DKALTTTKSNSH 139
C+ M +K TN + +V+FK+ V L H +D I K + S S+
Sbjct: 84 CVIMK---DKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKQKGPRSDNSKSN 140
Query: 140 SIFIGNIPFXXXXXXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEE 191
IF+G IP LR+ F+ G + V +I D +GFG++ F+ E+
Sbjct: 141 KIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQ 192
>UNIPROTKB|E2QVA8 [details] [associations]
symbol:RBM23 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01622 ProteinModelPortal:E2QVA8
Ensembl:ENSCAFT00000017824 Uniprot:E2QVA8
Length = 440
Score = 115 (45.5 bits), Expect = 0.00032, P = 0.00032
Identities = 33/122 (27%), Positives = 59/122 (48%)
Query: 91 HEKRTNMNAYVRFKNLESVEKALEMNGH------VIDEHTIRVDKALTTTKSNSHS---- 140
+ +R+ AYV F ++SV A+ + G +I + + L +N
Sbjct: 203 NSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQAEKNRLAAMANNLQKGSSG 262
Query: 141 ---IFIGNIPFXXXXXXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKA 197
+++G++ F LR FE G+IDN+ L++D T KG+G++ F ++ E R+A
Sbjct: 263 PMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITF-SDSECARRA 321
Query: 198 FE 199
E
Sbjct: 322 LE 323
Score = 99 (39.9 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 19/47 (40%), Positives = 29/47 (61%)
Query: 183 GYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKVS 229
G ++F E+ LR FE G+IDN+ L++D T KG+G++ F S
Sbjct: 269 GSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDS 315
Score = 69 (29.3 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 17/72 (23%), Positives = 36/72 (50%)
Query: 118 HVIDEHTIR--VDKALTTTKSNSHSIFIGNIPFXXXXXXLRKAFESCGEIDNVRLIRDQH 175
H ++ +R +D L+ + ++ ++F + L F + G++ +VR+I D++
Sbjct: 145 HFREKSPVREPIDN-LSPEERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRN 203
Query: 176 TNIGKGFGYVNF 187
+ KG YV F
Sbjct: 204 SRRSKGIAYVEF 215
>UNIPROTKB|H7BY16 [details] [associations]
symbol:NCL "Nucleolin" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC017104 HGNC:HGNC:7667
ChiTaRS:NCL ProteinModelPortal:H7BY16 PRIDE:H7BY16
Ensembl:ENST00000356936 Bgee:H7BY16 Uniprot:H7BY16
Length = 297
Score = 124 (48.7 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 39/147 (26%), Positives = 74/147 (50%)
Query: 85 IKMNKVHEKRTNMNAYVRFKNLESVEKALEM-NGHVIDEHTIRVD----KALTTTKSN-S 138
IK+ + ++ A++ F + E ++AL N I+ IR++ + +S S
Sbjct: 137 IKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPNARSQPS 196
Query: 139 HSIFIGNIPFXXXXXXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEE--LRK 196
++F+ + L+++F+ G + R++ D+ T KGFG+V+F +EE+ ++
Sbjct: 197 KTLFVKGLSEDTTEETLKESFD--GSV-RARIVTDRETGSSKGFGFVDFNSEEDAKAAKE 253
Query: 197 AFESCGEIDNVRLIRDQHTNIGKG-FG 222
A E GEID ++ D G+G FG
Sbjct: 254 AMED-GEIDGNKVTLDWAKPKGEGGFG 279
>UNIPROTKB|K7EQ02 [details] [associations]
symbol:DAZAP1 "DAZ-associated protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 HGNC:HGNC:2683 EMBL:AC005329 EMBL:AC027307
Ensembl:ENST00000592453 Uniprot:K7EQ02
Length = 225
Score = 121 (47.7 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 33/111 (29%), Positives = 52/111 (46%)
Query: 84 CIKMNKVHEKRTNMN---AYVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKSNSHS 140
C+ M +K TN + +V+FK+ V L H +D R K + S S+
Sbjct: 39 CVIMK---DKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDG---RNQKGPRSDNSKSNK 92
Query: 141 IFIGNIPFXXXXXXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEE 191
IF+G IP LR+ F+ G + V +I D +GFG++ F+ E+
Sbjct: 93 IFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQ 143
>ZFIN|ZDB-GENE-990415-245 [details] [associations]
symbol:elavl1 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 1 (Hu antigen R)" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-990415-245 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 EMBL:BX649372 IPI:IPI00817195
PRIDE:F1QM02 Ensembl:ENSDART00000146123 ArrayExpress:F1QM02
Bgee:F1QM02 Uniprot:F1QM02
Length = 340
Score = 90 (36.7 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 25/88 (28%), Positives = 48/88 (54%)
Query: 101 VRFKNLESVEKALEM-NGHVIDEHTIRVDKALTTTKSNSHSIFIGNIPFXXXXXXLRKAF 159
VR ++ +++ +M NG+ ++H D+ L +K+N + + +P LR F
Sbjct: 3 VRRGHVRYLKEVYDMSNGY--EDHM--ADE-LIDSKTN---LIVNYLPQNMSQDELRSLF 54
Query: 160 ESCGEIDNVRLIRDQHTNIGKGFGYVNF 187
S GE+++ +LIRD+ G+G+VN+
Sbjct: 55 SSIGEVESAKLIRDKVAGHSLGYGFVNY 82
Score = 85 (35.0 bits), Expect = 5.3e-05, Sum P(2) = 5.3e-05
Identities = 22/85 (25%), Positives = 42/85 (49%)
Query: 115 MNGHVIDEHTIRVDKALTTTKS-NSHSIFIGNIPFXXXXXXLRKAFESCGEIDNVRLIRD 173
+NG + TI+V A ++ S +++I +P + + F G I N R++ D
Sbjct: 95 LNGLRLQSKTIKVSYARPSSDSIKDANLYISGLPKTMTQKDVEEMFGRYGRIINSRVLVD 154
Query: 174 QHTNIGKGFGYVNF--KAEEEELRK 196
Q + + +G ++ F +AE E+ K
Sbjct: 155 QASGLSRGVAFIRFDKRAEAEDAIK 179
Score = 76 (31.8 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 17/36 (47%), Positives = 24/36 (66%)
Query: 189 AEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYV 224
A+E L + F G + NV++IRD +TN KGFG+V
Sbjct: 269 ADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFV 304
>UNIPROTKB|E2RND1 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:MNFEMLK
EMBL:AAEX03013964 Ensembl:ENSCAFT00000015215 Uniprot:E2RND1
Length = 644
Score = 105 (42.0 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 34/108 (31%), Positives = 53/108 (49%)
Query: 90 VHEKRTNMNAYVRFKNLESVEKALE-MNGHVIDEHTIRV-----DKALTTTKSNSHSIFI 143
V +R+ AY+ F+ E+AL+ MN VI IR+ D L KS +IFI
Sbjct: 46 VATRRSLGYAYINFQQPADAERALDTMNFEVIKGQPIRIMWSQRDPGLR--KSGVGNIFI 103
Query: 144 GNIPFXXXXXXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEE 191
N+ L F + G I + +++ D H + +GFG+V+F+ E
Sbjct: 104 KNLEDSIDNKALYDTFSTFGNILSCKVVCDDHGS--RGFGFVHFETHE 149
Score = 66 (28.3 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 13/38 (34%), Positives = 26/38 (68%)
Query: 190 EEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK 227
+E+ L+ F G++ +V+++RD + +GFG+VNF+
Sbjct: 203 DEQGLQDLFSRFGKMLSVKVMRDDSGH-SRGFGFVNFQ 239
>UNIPROTKB|E7ETJ9 [details] [associations]
symbol:TIAL1 "Nucleolysin TIAR" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC012468 HGNC:HGNC:11804
ChiTaRS:TIAL1 IPI:IPI00647436 ProteinModelPortal:E7ETJ9 SMR:E7ETJ9
Ensembl:ENST00000412524 ArrayExpress:E7ETJ9 Bgee:E7ETJ9
Uniprot:E7ETJ9
Length = 132
Score = 105 (42.0 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 27/94 (28%), Positives = 46/94 (48%)
Query: 100 YVRFKNLESVEKALE-MNGHVIDEHTIRVDKALTTTK-----SNSHSIFIGNIPFXXXXX 153
+V F AL MNG I ++V+ A T + SN +F+G++
Sbjct: 13 FVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTE 72
Query: 154 XLRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 187
++ AF G+I + R+++D T KG+G+V+F
Sbjct: 73 DIKSAFAPFGKISDARVVKDMATGKSKGYGFVSF 106
>TAIR|locus:2124261 [details] [associations]
symbol:PAB2 "AT4G34110" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0009651
"response to salt stress" evidence=IEP] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006486 "protein glycosylation" evidence=RCA] [GO:0006413
"translational initiation" evidence=ISS] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR002343 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PRINTS:PR00961
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005829 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
GO:GO:0009651 Gene3D:3.30.70.330 GO:GO:0003743 EMBL:AL021961
EMBL:AL161584 eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:L19418
EMBL:BT002354 IPI:IPI00532109 PIR:T05425 RefSeq:NP_195137.5
UniGene:At.25252 ProteinModelPortal:P42731 SMR:P42731 IntAct:P42731
STRING:P42731 PaxDb:P42731 PRIDE:P42731 ProMEX:P42731
EnsemblPlants:AT4G34110.1 GeneID:829557 KEGG:ath:AT4G34110
TAIR:At4g34110 InParanoid:P42731 OMA:FDPIKGR PhylomeDB:P42731
ProtClustDB:CLSN2714507 Genevestigator:P42731 GermOnline:AT4G34110
Uniprot:P42731
Length = 629
Score = 115 (45.5 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 30/109 (27%), Positives = 59/109 (54%)
Query: 100 YVRFKNLESVEKALE-MNGHVIDEHTI-------RVDKALTTTKSNSHSIFIGNIPFXXX 151
+V++ N ES +KA+E +NG ++++ + R ++ T K+ ++++ N+
Sbjct: 168 FVQYANEESAQKAIEKLNGMLLNDKQVYVGPFLRRQERDSTANKTKFTNVYVKNLAESTT 227
Query: 152 XXXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFES 200
L+ AF G+I + +++D KGFG+VNF+ ++ R A ES
Sbjct: 228 DDDLKNAFGEYGKITSAVVMKDGEGK-SKGFGFVNFENADDAAR-AVES 274
Score = 54 (24.1 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 11/36 (30%), Positives = 22/36 (61%)
Query: 191 EEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 226
+E+L++ F G + + +++RD + KG G+V F
Sbjct: 331 DEKLKEIFSPFGTVTSSKVMRDPN-GTSKGSGFVAF 365
>UNIPROTKB|F1SHL4 [details] [associations]
symbol:F1SHL4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104347 InterPro:IPR012956 Pfam:PF08143
EMBL:CU468866 Ensembl:ENSSSCT00000002164 OMA:QYGTIVE Uniprot:F1SHL4
Length = 280
Score = 123 (48.4 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 35/115 (30%), Positives = 54/115 (46%)
Query: 85 IKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKSNSHSIFIG 144
IKM+ + R+ +V K+ SVEK L+ H ++ I +KA IF+G
Sbjct: 103 IKMDP-NTGRSRGFGFVLIKDAASVEKILDQKEHRLNGDVIDPEKAKVMKNDPVKKIFVG 161
Query: 145 NIPFXXXXXXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
P + F GEI+ + L D +N +GF ++ FK EEE ++K E
Sbjct: 162 LNP---EATEKNRDFGEFGEIEAIELPMDPKSNKRRGFVFITFKEEEEPVKKVLE 213
>UNIPROTKB|F1SMV6 [details] [associations]
symbol:LOC100737174 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 EMBL:CU856676
Ensembl:ENSSSCT00000017723 Uniprot:F1SMV6
Length = 365
Score = 125 (49.1 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 40/147 (27%), Positives = 74/147 (50%)
Query: 85 IKMNKVHEKRTNMNAYVRFKNLESVEKALEM-NGHVIDEHTIRVD----KALTTTKSN-S 138
IK+ + ++ A++ F + E ++AL N I+ IR++ + +S S
Sbjct: 166 IKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPNARSQPS 225
Query: 139 HSIFIGNIPFXXXXXXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEE--LRK 196
++F+ + L+++F+ G I R++ D+ T KGFG+V+F +EE+ ++
Sbjct: 226 KTLFVKGLSEETTEETLKESFD--GSI-RARIVTDRETGSSKGFGFVDFNSEEDAKAAKE 282
Query: 197 AFESCGEIDNVRLIRDQHTNIGKG-FG 222
A E GEID ++ D G+G FG
Sbjct: 283 AMED-GEIDGNKVTLDWAKPKGEGGFG 308
Score = 110 (43.8 bits), Expect = 0.00087, P = 0.00087
Identities = 33/110 (30%), Positives = 56/110 (50%)
Query: 100 YVRFKNLESVEKALEMNGHVIDEHTIRVDK--ALTTTKS-NSHSIFIGNIPFXXXXXXLR 156
YV F++ E +EKALE+ G + + I+++K + K ++ ++ N+P+ L+
Sbjct: 5 YVDFESAEDLEKALELTGLKVFGNEIKLEKPKGKDSKKDRDARTLLAKNLPYKVTQDELK 64
Query: 157 KAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCG-EID 205
+ FE EI RL+ + KG Y+ FK E + + E G EID
Sbjct: 65 EVFEDAVEI---RLVSKDGKS--KGIAYIEFKTEADAEKTLEEKQGTEID 109
>TAIR|locus:2178198 [details] [associations]
symbol:AT5G09880 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA;ISS] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006397
"mRNA processing" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 EMBL:CP002688 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q14103
TIGRFAMs:TIGR01622 KO:K13091 OMA:AGWDTEI EMBL:AY054603
IPI:IPI00543371 RefSeq:NP_568220.1 UniGene:At.6946
ProteinModelPortal:Q93Y25 SMR:Q93Y25 STRING:Q93Y25 PRIDE:Q93Y25
EnsemblPlants:AT5G09880.1 GeneID:830848 KEGG:ath:AT5G09880
TAIR:At5g09880 InParanoid:Q93Y25 PhylomeDB:Q93Y25
ProtClustDB:CLSN2723619 Genevestigator:Q93Y25 Uniprot:Q93Y25
Length = 527
Score = 87 (35.7 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 29/123 (23%), Positives = 53/123 (43%)
Query: 65 ETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHT 124
E+ R RS D + K + + EKR++ + K E VE+ H
Sbjct: 101 ESDRERSSKERDRSDRDKPRDRERREREKRSSSRSRREEKEPEVVERGSR-------RHR 153
Query: 125 IRVDKALTTTKSNSHSIFIGNIPFXXXXXXLRKAFESCGEIDNVRLIRDQHTNIGKGFGY 184
+ D+ + + ++F +P + + F G++ +VRLI D+++ KG GY
Sbjct: 154 DKKDEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGY 213
Query: 185 VNF 187
+ F
Sbjct: 214 IEF 216
Score = 84 (34.6 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 17/44 (38%), Positives = 27/44 (61%)
Query: 183 GYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 226
G ++F E +LR+ FE+ G ++ V+L D T KGFG++ F
Sbjct: 270 GNLHFNMSELQLRQIFEAFGPVELVQLPLDPETGQCKGFGFIQF 313
>UNIPROTKB|F1RKD1 [details] [associations]
symbol:RBM19 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0040019 "positive regulation of embryonic development"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0040019 OMA:VFREKNV
GeneTree:ENSGT00700000104575 EMBL:CT971483
Ensembl:ENSSSCT00000010816 Uniprot:F1RKD1
Length = 965
Score = 130 (50.8 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 39/131 (29%), Positives = 65/131 (49%)
Query: 86 KMNKVHEKRTNMNAYVRFKNLESVEKAL-EMNGHVIDEHTIRV---DKAL----TTT--- 134
K NK + +V +K E +KAL ++ GHV+D H + V ++A T T
Sbjct: 769 KKNKAGALLSMGFGFVEYKKPEQAQKALKQLQGHVVDGHKLEVRISERATKPAPTATRKK 828
Query: 135 ----KSNSHSIFIGNIPFXXXXXXLRKAFESCGEIDNVRLIRDQH-TNIGKGFGYVNFKA 189
K + I + NIPF +R+ F + GE+ VRL + T +GFG+V+F
Sbjct: 829 QVARKQTTSKILVRNIPFQADSREIRELFSTFGELKTVRLPKKMTGTGTHRGFGFVDFFT 888
Query: 190 EEEELRKAFES 200
+++ ++AF +
Sbjct: 889 KQDA-KRAFNA 898
>UNIPROTKB|F1SDR6 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:MNFEMLK
EMBL:CU633343 Ensembl:ENSSSCT00000008080 Uniprot:F1SDR6
Length = 608
Score = 104 (41.7 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 33/108 (30%), Positives = 53/108 (49%)
Query: 90 VHEKRTNMNAYVRFKNLESVEKALE-MNGHVIDEHTIRV-----DKALTTTKSNSHSIFI 143
V +R+ AY+ F+ E+AL+ MN VI IR+ D L KS ++FI
Sbjct: 46 VATRRSLGYAYINFQQPADAERALDTMNFEVIKGQPIRIMWSQRDPGLR--KSGVGNVFI 103
Query: 144 GNIPFXXXXXXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEE 191
N+ L F + G I + +++ D H + +GFG+V+F+ E
Sbjct: 104 KNLEDSIDNKALYDTFSTFGNILSCKVVCDDHGS--RGFGFVHFETHE 149
Score = 66 (28.3 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 14/38 (36%), Positives = 25/38 (65%)
Query: 190 EEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK 227
+E L+ F G+I +V+++RD + +GFG+VNF+
Sbjct: 203 DERCLQDLFSQFGKILSVKVMRDDSGH-SRGFGFVNFE 239
>WB|WBGene00001368 [details] [associations]
symbol:exc-7 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0002064 "epithelial cell development"
evidence=IMP] [GO:0035150 "regulation of tube size" evidence=IMP]
[GO:0016607 "nuclear speck" evidence=IDA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0002064 eggNOG:COG0724 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 HSSP:P26378 GeneTree:ENSGT00560000077064
OMA:DIGESKT GO:GO:0035150 EMBL:Z36752 PIR:T21822 RefSeq:NP_496057.1
ProteinModelPortal:Q20084 SMR:Q20084 DIP:DIP-27011N IntAct:Q20084
MINT:MINT-1038844 STRING:Q20084 PaxDb:Q20084 EnsemblMetazoa:F35H8.5
GeneID:174506 KEGG:cel:CELE_F35H8.5 CTD:174506 WormBase:F35H8.5
InParanoid:Q20084 NextBio:884320 Uniprot:Q20084
Length = 456
Score = 102 (41.0 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
Identities = 20/56 (35%), Positives = 33/56 (58%)
Query: 140 SIFIGNIPFXXXXXXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELR 195
++ I +P +R F S GEI++ +L+RD+ T G+G+VN+ EE+ LR
Sbjct: 43 NLIINYLPQGMTQEEVRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVREEDALR 98
Score = 65 (27.9 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 193 ELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 226
EL F G+I R++ D T + KG G+V F
Sbjct: 143 ELESIFRPFGQIITSRILSDNVTGLSKGVGFVRF 176
>UNIPROTKB|F1P336 [details] [associations]
symbol:NCL "Nucleolin" species:9031 "Gallus gallus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00550000074656
EMBL:AADN02020638 EMBL:AADN02020639 IPI:IPI00680028
Ensembl:ENSGALT00000033265 ArrayExpress:F1P336 Uniprot:F1P336
Length = 689
Score = 128 (50.1 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 48/191 (25%), Positives = 88/191 (46%)
Query: 32 KMALKLKMNPSLTKSKNH--ALSSVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNK 89
K + K P K K A +S S+F T + + A K +++++
Sbjct: 254 KKEMANKSAPEAKKKKTEIKAPASAFSLFVK-NLTPTKDYEELRTAIKEFFGKKNLQVSE 312
Query: 90 VHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALT--TTKSN-----SHSIF 142
V + YV F + E ++KAL++NG + I+++KA + + K N + ++F
Sbjct: 313 VRIGSSKRFGYVDFLSAEDMDKALQLNGKKLMGLEIKLEKAKSKESLKENKKERDARTLF 372
Query: 143 IGNIPFXXXXXXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCG 202
+ N+P+ ++ FE+ E VRL+ ++ + KG Y+ FK E E + E G
Sbjct: 373 VKNLPYRVTEDEMKNVFENALE---VRLVLNKEGS-SKGMAYIEFKTEAEAEKALEEKQG 428
Query: 203 -EIDNVRLIRD 212
E+D ++ D
Sbjct: 429 TEVDGRAMVID 439
Score = 117 (46.2 bits), Expect = 0.00035, P = 0.00035
Identities = 43/147 (29%), Positives = 73/147 (49%)
Query: 81 RKAC-IKMNKVHEKRTNMNAYVRFKNLESVEKALEM-NGHVIDEHTIRVD-KALTTTKSN 137
+KA IKM + ++ R A+V F E ++AL N I+ IR++ + + K N
Sbjct: 480 KKATSIKMPQNNQGRPKGYAFVEFPTAEDAKEALNSCNNTEIEGRAIRLEFSSPSWQKGN 539
Query: 138 ----------SHSIFIGNIPFXXXXXXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 187
S ++F+ + LR++FE G I + R++ D+ T KGFG+V+F
Sbjct: 540 MNARGGFNQQSKTLFVRGLSEDTTEETLRESFE--GSI-SARIVTDRDTGSSKGFGFVDF 596
Query: 188 KAEEEE--LRKAFESCGEIDNVRLIRD 212
+ E+ ++A E GEID ++ D
Sbjct: 597 SSPEDAKAAKEAMED-GEIDGNKVTLD 622
>RGD|3153 [details] [associations]
symbol:Ncl "nucleolin" species:10116 "Rattus norvegicus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0001525
"angiogenesis" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO;ISS] [GO:0005634
"nucleus" evidence=ISO] [GO:0005654 "nucleoplasm" evidence=ISO]
[GO:0005730 "nucleolus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005938 "cell cortex" evidence=ISO] [GO:0008022
"protein C-terminus binding" evidence=ISO] [GO:0030529
"ribonucleoprotein complex" evidence=ISO;ISS] [GO:0042162 "telomeric
DNA binding" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:3153 GO:GO:0005737
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030529 GO:GO:0042162 eggNOG:COG0724 HOVERGEN:HBG002295
OrthoDB:EOG45MN5J EMBL:M55022 EMBL:M55015 EMBL:M55017 EMBL:M55020
EMBL:M22090 IPI:IPI00882501 PIR:JH0148 UniGene:Rn.144561
UniGene:Rn.7735 ProteinModelPortal:P13383 SMR:P13383 IntAct:P13383
STRING:P13383 PhosphoSite:P13383 PRIDE:P13383 UCSC:RGD:3153
InParanoid:P13383 ArrayExpress:P13383 Genevestigator:P13383
GermOnline:ENSRNOG00000018273 Uniprot:P13383
Length = 713
Score = 128 (50.1 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 39/133 (29%), Positives = 69/133 (51%)
Query: 99 AYVRFKNLESVEKALEM-NGHVIDEHTIRVD----KALTTTKSN-SHSIFIGNIPFXXXX 152
A++ F + E ++AL N I+ TIR++ + +S S ++F+ +
Sbjct: 529 AFIEFASFEDAKEALNSCNKMEIEGRTIRLELQGPRGSPNARSQPSKTLFVKGLSEDTTE 588
Query: 153 XXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEE--LRKAFESCGEIDNVRLI 210
L+++FE G + R++ D+ T KGFG+V+F +EE+ ++A E GEID ++
Sbjct: 589 ETLKESFE--GSV-RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMED-GEIDGNKVT 644
Query: 211 RDQHTNIGKG-FG 222
D G+G FG
Sbjct: 645 LDWAKPKGEGGFG 657
>UNIPROTKB|Q5U328 [details] [associations]
symbol:Ncl "Nucleolin, isoform CRA_c" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:3153 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HOVERGEN:HBG002295 KO:K11294
GeneTree:ENSGT00550000074656 CTD:4691 HOGENOM:HOG000113885
UniGene:Rn.144561 UniGene:Rn.7735 EMBL:CH474004 OMA:ENAMEIR
EMBL:BC085751 IPI:IPI00231827 RefSeq:NP_036881.2 SMR:Q5U328
STRING:Q5U328 Ensembl:ENSRNOT00000024712 GeneID:25135
KEGG:rno:25135 InParanoid:Q5U328 NextBio:605553
Genevestigator:Q5U328 Uniprot:Q5U328
Length = 714
Score = 128 (50.1 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 39/133 (29%), Positives = 69/133 (51%)
Query: 99 AYVRFKNLESVEKALEM-NGHVIDEHTIRVD----KALTTTKSN-SHSIFIGNIPFXXXX 152
A++ F + E ++AL N I+ TIR++ + +S S ++F+ +
Sbjct: 530 AFIEFASFEDAKEALNSCNKMEIEGRTIRLELQGPRGSPNARSQPSKTLFVKGLSEDTTE 589
Query: 153 XXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEE--LRKAFESCGEIDNVRLI 210
L+++FE G + R++ D+ T KGFG+V+F +EE+ ++A E GEID ++
Sbjct: 590 ETLKESFE--GSV-RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMED-GEIDGNKVT 645
Query: 211 RDQHTNIGKG-FG 222
D G+G FG
Sbjct: 646 LDWAKPKGEGGFG 658
>UNIPROTKB|E5RGH3 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00983093
ProteinModelPortal:E5RGH3 SMR:E5RGH3 Ensembl:ENST00000518196
ArrayExpress:E5RGH3 Bgee:E5RGH3 Uniprot:E5RGH3
Length = 108
Score = 104 (41.7 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 30/97 (30%), Positives = 50/97 (51%)
Query: 99 AYVRFKNLESVEKALE-MNGHVIDEHTIRV---DKALTTTKSNSHSIFIGNIPFXXXXXX 154
AYV F+ E+AL+ MN VI +R+ + + KS +IFI N+
Sbjct: 10 AYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKA 69
Query: 155 LRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEE 191
L F + G I + +++ D+ N KG+G+V+F+ +E
Sbjct: 70 LYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQE 104
>UNIPROTKB|F8VYN5 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0000380 EMBL:AC078778 HGNC:HGNC:5031
ChiTaRS:HNRNPA1 IPI:IPI00644968 ProteinModelPortal:F8VYN5
SMR:F8VYN5 PRIDE:F8VYN5 Ensembl:ENST00000550994 ArrayExpress:F8VYN5
Bgee:F8VYN5 Uniprot:F8VYN5
Length = 113
Score = 104 (41.7 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 27/108 (25%), Positives = 50/108 (46%)
Query: 87 MNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKSN---SH---- 139
M + KR+ +V + +E V+ A+ H +D + +A++ S +H
Sbjct: 1 MRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVK 60
Query: 140 SIFIGNIPFXXXXXXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 187
IF+G I LR FE G+I+ + ++ D+ + +GF +V F
Sbjct: 61 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTF 108
>ZFIN|ZDB-GENE-030131-6986 [details] [associations]
symbol:ncl "nucleolin" species:7955 "Danio rerio"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-6986 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HOVERGEN:HBG002295 InterPro:IPR017859 PRINTS:PR01503
EMBL:BC162643 IPI:IPI00485582 UniGene:Dr.75207
ProteinModelPortal:B3DH54 STRING:B3DH54 ArrayExpress:B3DH54
Uniprot:B3DH54
Length = 708
Score = 114 (45.2 bits), Expect = 2.1e-05, Sum P(2) = 2.1e-05
Identities = 34/126 (26%), Positives = 63/126 (50%)
Query: 82 KACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKS----- 136
K +++ V T YV F + E ++KALE+NG + +++DKA + S
Sbjct: 316 KEGLEIQDVRLGGTKKFGYVDFASEEELQKALELNGKKLLGQPVKLDKARSKENSQENKK 375
Query: 137 --NSHSIFIGNIPFXXXXXXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAE---E 191
++ ++F+ N+P+ LR+ F+ +D +R+ +T +G Y+ FK E E
Sbjct: 376 ERDARTLFVKNLPYSITQDDLREIFDQA--VD-IRVPMG-NTGTSRGIAYIEFKTEAIAE 431
Query: 192 EELRKA 197
+ L +A
Sbjct: 432 KALEEA 437
Score = 55 (24.4 bits), Expect = 2.1e-05, Sum P(2) = 2.1e-05
Identities = 13/36 (36%), Positives = 22/36 (61%)
Query: 191 EEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 226
++ L+ +F+ G I R+ D+ T KGFG+V+F
Sbjct: 570 DQTLKDSFD--GAIA-ARIATDRDTGSSKGFGFVDF 602
>UNIPROTKB|F1P5I0 [details] [associations]
symbol:LOC100859627 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00700000104376 EMBL:AADN02020007
EMBL:AADN02020008 EMBL:AADN02020009 EMBL:AADN02020010
EMBL:AADN02020011 EMBL:AADN02020012 EMBL:AADN02020013
IPI:IPI00971390 Ensembl:ENSGALT00000015053 Uniprot:F1P5I0
Length = 288
Score = 122 (48.0 bits), Expect = 2.1e-05, P = 2.1e-05
Identities = 28/111 (25%), Positives = 53/111 (47%)
Query: 84 CIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALT---TTKSNSH- 139
C+ M KR+ +V + +E V+ A+ H +D + +A++ + K +H
Sbjct: 38 CVVMRDPQTKRSRGFGFVTYSCVEEVDAAMSARPHKVDGRVVEPKRAVSREDSVKPGAHL 97
Query: 140 ---SIFIGNIPFXXXXXXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 187
IF+G I LR+ FE G+I+ + ++ D+ + +GF +V F
Sbjct: 98 TVKKIFVGGIKEDTEEYNLREYFEKYGKIETIEVMEDRQSGKKRGFAFVTF 148
>TAIR|locus:2019622 [details] [associations]
symbol:GR-RBP5 "AT1G74230" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0005524
"ATP binding" evidence=IDA] [GO:0005507 "copper ion binding"
evidence=IDA] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005739 GO:GO:0005524
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005507 eggNOG:COG0724
EMBL:AC020579 HSSP:Q14103 KO:K12741 EMBL:BT002037 EMBL:BT006315
IPI:IPI00516639 PIR:F96770 RefSeq:NP_177563.1 UniGene:At.18152
ProteinModelPortal:Q9C909 SMR:Q9C909 PaxDb:Q9C909 PRIDE:Q9C909
EnsemblPlants:AT1G74230.1 GeneID:843763 KEGG:ath:AT1G74230
GeneFarm:3954 TAIR:At1g74230 InParanoid:Q9C909 OMA:TERGSGF
ProtClustDB:CLSN2914559 Genevestigator:Q9C909 Uniprot:Q9C909
Length = 289
Score = 122 (48.0 bits), Expect = 2.2e-05, P = 2.2e-05
Identities = 30/87 (34%), Positives = 46/87 (52%)
Query: 137 NSHSIFIGNIPFXXXXXXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRK 196
+S IF+G I + LR+AF GE+ + ++I D+ T +GF +V F + EE
Sbjct: 32 SSSKIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEA-SN 90
Query: 197 AFESCGEIDNVRLIRDQH-TNIGKGFG 222
A + G+ + R IR + T G GFG
Sbjct: 91 AMQLDGQDLHGRRIRVNYATERGSGFG 117
>UNIPROTKB|Q9TTV2 [details] [associations]
symbol:HNRNPA2B1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:9490 "Saguinus oedipus" [GO:0030529
"ribonucleoprotein complex" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723
GO:GO:0030529 HOVERGEN:HBG002295 HSSP:P22626 EMBL:AF192348
ProteinModelPortal:Q9TTV2 SMR:Q9TTV2 Uniprot:Q9TTV2
Length = 341
Score = 123 (48.4 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 30/111 (27%), Positives = 51/111 (45%)
Query: 84 CIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKSN---SH- 139
C+ M KR+ +V F ++ V+ A+ H ID + +A+ +S +H
Sbjct: 38 CVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHV 97
Query: 140 ---SIFIGNIPFXXXXXXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 187
+F+G I LR F G+ID + +I D+ + +GFG+V F
Sbjct: 98 TVKKLFVGGIKEDTEEHHLRDYFAEYGKIDTIEIITDRQSGKKRGFGFVTF 148
>UNIPROTKB|J9NZR9 [details] [associations]
symbol:J9NZR9 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104347 EMBL:AAEX03000342
Ensembl:ENSCAFT00000001210 OMA:GSKINAN Uniprot:J9NZR9
Length = 269
Score = 121 (47.7 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 28/101 (27%), Positives = 51/101 (50%)
Query: 100 YVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKSNSHSIFIGNIPFXXXXXXLRKAF 159
+V FK SV+K LE+ H +D I +A K +F+G + +++
Sbjct: 56 FVLFKEAASVDKVLELKEHKLDSMLIDPKRA-KALKEPPKKVFVGGLSPDTYEEQIKEYL 114
Query: 160 ESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFES 200
+ GEI+N+ L D TN +GF ++ + +E+ ++K E+
Sbjct: 115 GAFGEIENIELPMDTKTNERRGFCFITY-TDEKPVKKLLEN 154
>UNIPROTKB|G3XAC6 [details] [associations]
symbol:RBM39 "RNA-binding region (RNP1, RRM) containing 2,
isoform CRA_f" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] InterPro:IPR000504 InterPro:IPR006509
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 EMBL:CH471077 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL357374 TIGRFAMs:TIGR01622
UniGene:Hs.282901 HGNC:HGNC:15923 ChiTaRS:RBM39
ProteinModelPortal:G3XAC6 SMR:G3XAC6 Ensembl:ENST00000338163
ArrayExpress:G3XAC6 Bgee:G3XAC6 Uniprot:G3XAC6
Length = 423
Score = 91 (37.1 bits), Expect = 2.5e-05, Sum P(2) = 2.5e-05
Identities = 17/47 (36%), Positives = 28/47 (59%)
Query: 183 GYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKVS 229
G ++F E+ LR FE G I++++L+ D T KG+G++ F S
Sbjct: 255 GSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDS 301
Score = 75 (31.5 bits), Expect = 2.5e-05, Sum P(2) = 2.5e-05
Identities = 18/69 (26%), Positives = 36/69 (52%)
Query: 121 DEHTIR--VDKALTTTKSNSHSIFIGNIPFXXXXXXLRKAFESCGEIDNVRLIRDQHTNI 178
D+ +R +D LT + ++ ++F + L + F + G++ +VR+I D+++
Sbjct: 134 DKSPVREPIDN-LTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRR 192
Query: 179 GKGFGYVNF 187
KG YV F
Sbjct: 193 SKGIAYVEF 201
>UNIPROTKB|F1N3T3 [details] [associations]
symbol:F1N3T3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 EMBL:DAAA02019525 IPI:IPI00709098
Ensembl:ENSBTAT00000014774 OMA:FGGYPCY Uniprot:F1N3T3
Length = 352
Score = 123 (48.4 bits), Expect = 2.5e-05, P = 2.5e-05
Identities = 29/111 (26%), Positives = 54/111 (48%)
Query: 84 CIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKS------- 136
C+ + + +++ +V F ++ V+ A+ H ID + +A++ KS
Sbjct: 50 CVVIRGLASQKSRGFGFVTFSSVAEVDAAMAARPHSIDGRVVDPKRAVSREKSEKQGSLV 109
Query: 137 NSHSIFIGNIPFXXXXXXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 187
N +F+G I LR+ FE G+ID + +I D+ + +GFG+V F
Sbjct: 110 NVKKLFVGGIKEDTEEHHLREYFEKYGKIDAIEIITDRQSGKKRGFGFVTF 160
>UNIPROTKB|F1RX74 [details] [associations]
symbol:HNRNPA2B1 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0097157 "pre-mRNA intronic binding" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0050658 "RNA transport" evidence=IEA] [GO:0048025 "negative
regulation of mRNA splicing, via spliceosome" evidence=IEA]
[GO:0043047 "single-stranded telomeric DNA binding" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005730 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0071013 GO:GO:0050658
GO:GO:0043047 GeneTree:ENSGT00700000104376 OMA:HYSARTS
EMBL:CU469303 Ensembl:ENSSSCT00000017244 Uniprot:F1RX74
Length = 353
Score = 123 (48.4 bits), Expect = 2.5e-05, P = 2.5e-05
Identities = 29/111 (26%), Positives = 51/111 (45%)
Query: 84 CIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKSN---SH- 139
C+ M KR+ +V F ++ V+ A+ H ID + +A+ +S +H
Sbjct: 50 CVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHV 109
Query: 140 ---SIFIGNIPFXXXXXXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 187
+F+G I LR FE G++D + +I D+ + +GFG+ F
Sbjct: 110 TVKKLFVGGIKEDTEEHHLRDYFEEYGKVDTIEIITDRQSGKKRGFGFFTF 160
>UNIPROTKB|F1NBB6 [details] [associations]
symbol:LOC100859627 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00700000104376 EMBL:AADN02020007
EMBL:AADN02020008 EMBL:AADN02020009 EMBL:AADN02020010
EMBL:AADN02020011 EMBL:AADN02020012 EMBL:AADN02020013
IPI:IPI00818847 Ensembl:ENSGALT00000029498 Uniprot:F1NBB6
Length = 310
Score = 122 (48.0 bits), Expect = 2.5e-05, P = 2.5e-05
Identities = 28/111 (25%), Positives = 53/111 (47%)
Query: 84 CIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALT---TTKSNSH- 139
C+ M KR+ +V + +E V+ A+ H +D + +A++ + K +H
Sbjct: 50 CVVMRDPQTKRSRGFGFVTYSCVEEVDAAMSARPHKVDGRVVEPKRAVSREDSVKPGAHL 109
Query: 140 ---SIFIGNIPFXXXXXXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 187
IF+G I LR+ FE G+I+ + ++ D+ + +GF +V F
Sbjct: 110 TVKKIFVGGIKEDTEEYNLREYFEKYGKIETIEVMEDRQSGKKRGFAFVTF 160
>UNIPROTKB|D4A1X0 [details] [associations]
symbol:D4A1X0 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0097157
GO:GO:0048025 OrthoDB:EOG4HQDKF IPI:IPI00778370
ProteinModelPortal:D4A1X0 Ensembl:ENSRNOT00000061082 Uniprot:D4A1X0
Length = 312
Score = 122 (48.0 bits), Expect = 2.6e-05, P = 2.6e-05
Identities = 31/111 (27%), Positives = 52/111 (46%)
Query: 84 CIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKSN---SH- 139
C+ M KR+ +V F ++ V+ A+ H ID + +A+ +S +H
Sbjct: 38 CVVMRDPASKRSRGFGFVTFSSMAEVDVAMAARPHSIDGRVVEPKRAVAREESGKPGAHV 97
Query: 140 ---SIFIGNIPFXXXXXXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 187
+F+G I LR FE G+ID + +I D+ + +GFG+V F
Sbjct: 98 TVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSG-KRGFGFVTF 147
>WB|WBGene00012904 [details] [associations]
symbol:tiar-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HSSP:P11940 EMBL:AL110485 GeneTree:ENSGT00680000099967
HOGENOM:HOG000206748 KO:K13201 RefSeq:NP_496718.1 UniGene:Cel.14057
ProteinModelPortal:Q9U2F5 SMR:Q9U2F5 IntAct:Q9U2F5 PaxDb:Q9U2F5
EnsemblMetazoa:Y46G5A.13 GeneID:174909 KEGG:cel:CELE_Y46G5A.13
UCSC:Y46G5A.13 CTD:174909 WormBase:Y46G5A.13 InParanoid:Q9U2F5
NextBio:886000 Uniprot:Q9U2F5
Length = 434
Score = 124 (48.7 bits), Expect = 2.7e-05, P = 2.7e-05
Identities = 39/140 (27%), Positives = 65/140 (46%)
Query: 83 ACIKMNKVHEKRTNMNAYVRFKNLESVEKALEM-NGHVIDEHTIRVDKAL---------T 132
A +K + E + A+V F + AL+ NG + E + V A +
Sbjct: 65 AVMKAKIIFEGLNDPYAFVEFSDHNQATLALQSHNGRELLEKEMHVTWAFEPREPGENRS 124
Query: 133 TTKSNSH-SIFIGNIPFXXXXXXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEE 191
+++ H +F+G++ LR+AF GE+ ++IRD +TN GKG+G+V++ E
Sbjct: 125 KPETSRHFHVFVGDLCSEIDSTKLREAFVKFGEVSEAKIIRDNNTNKGKGYGFVSYPRRE 184
Query: 192 EELRKAFESCGEIDNVRLIR 211
+ R E G R IR
Sbjct: 185 DAERAIDEMNGAWLGRRTIR 204
>UNIPROTKB|D4A2D2 [details] [associations]
symbol:D4A2D2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OrthoDB:EOG4HQDKF
InterPro:IPR021662 Pfam:PF11627 GeneTree:ENSGT00550000074566
IPI:IPI00559583 ProteinModelPortal:D4A2D2
Ensembl:ENSRNOT00000032337 Uniprot:D4A2D2
Length = 262
Score = 120 (47.3 bits), Expect = 2.9e-05, P = 2.9e-05
Identities = 27/106 (25%), Positives = 53/106 (50%)
Query: 84 CIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKSNSHS--I 141
C+ M + KR+ +V + +E V+ A+ H +D + ++A++ S+S + I
Sbjct: 43 CVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPERAVSREDSHSLTVKI 102
Query: 142 FIGNIPFXXXXXXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 187
F+G I LR E G+I+ + ++ D+ + +GF +V F
Sbjct: 103 FVGGIKEDTEEHYLRDYSEQYGKIEVIEIMTDRGSGKKRGFAFVTF 148
>ZFIN|ZDB-GENE-040426-2852 [details] [associations]
symbol:rbm39a "RNA binding motif protein 39a"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-2852 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724 HSSP:P11940
HOVERGEN:HBG057646 TIGRFAMs:TIGR01622 HOGENOM:HOG000236253
KO:K13091 OMA:AGWDTEI OrthoDB:EOG4RJG1P
GeneTree:ENSGT00690000102089 EMBL:BX001056 EMBL:BC044487
IPI:IPI00498221 RefSeq:NP_001012304.1 UniGene:Dr.38353 SMR:Q803H1
Ensembl:ENSDART00000017973 Ensembl:ENSDART00000135435 GeneID:406251
KEGG:dre:406251 CTD:406251 NextBio:20817886 Uniprot:Q803H1
Length = 523
Score = 94 (38.1 bits), Expect = 3.1e-05, Sum P(2) = 3.1e-05
Identities = 17/44 (38%), Positives = 27/44 (61%)
Query: 183 GYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 226
G ++F E+ LR FE G ID+++L+ D T KG+G++ F
Sbjct: 251 GSLHFNITEDMLRGIFEPFGRIDSIQLMMDSETGRSKGYGFITF 294
Score = 73 (30.8 bits), Expect = 3.1e-05, Sum P(2) = 3.1e-05
Identities = 17/69 (24%), Positives = 35/69 (50%)
Query: 121 DEHTIR--VDKALTTTKSNSHSIFIGNIPFXXXXXXLRKAFESCGEIDNVRLIRDQHTNI 178
D +R +D LT + ++ ++F + L + F + G++ +VR+I D+++
Sbjct: 130 DRSPVRQPIDN-LTPEERDARTVFCMQLAARIRPRDLEEFFSAVGKVRDVRIISDRNSRR 188
Query: 179 GKGFGYVNF 187
KG Y+ F
Sbjct: 189 SKGIAYIEF 197
>ZFIN|ZDB-GENE-050417-329 [details] [associations]
symbol:zgc:112425 "zgc:112425" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-050417-329 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOVERGEN:HBG107480 KO:K13195
HOGENOM:HOG000276232 OrthoDB:EOG4HHP40 GeneTree:ENSGT00700000104309
OMA:GNNSGGY EMBL:CABZ01088879 EMBL:CABZ01088880 EMBL:BC093299
EMBL:BC095030 IPI:IPI00570286 RefSeq:NP_001017797.1
UniGene:Dr.75965 SMR:Q566W6 STRING:Q566W6
Ensembl:ENSDART00000093068 Ensembl:ENSDART00000113350 GeneID:550495
KEGG:dre:550495 NextBio:20879737 Uniprot:Q566W6
Length = 185
Score = 115 (45.5 bits), Expect = 3.2e-05, P = 3.2e-05
Identities = 29/88 (32%), Positives = 43/88 (48%)
Query: 136 SNSHSIFIGNIPFXXXXXXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELR 195
S+ +FIG + F L AF G I NV + R++ TN +GFG+V F+ ++ +
Sbjct: 2 SDEGKLFIGGLSFDTTEQSLEDAFSKYGVITNVHVARNRETNRSRGFGFVTFE-NPDDAK 60
Query: 196 KAFESC-GEIDNVRLIRDQHTNIGKGFG 222
A E G+ + R IR G G G
Sbjct: 61 DALEGMNGKSVDGRTIRVDEAGKGGGGG 88
>FB|FBgn0064117 [details] [associations]
symbol:CG33714 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
EMBL:AE014298 GO:GO:0003729 Gene3D:3.30.70.330
GeneTree:ENSGT00390000008624 RefSeq:NP_001027083.1
RefSeq:NP_001027084.1 UniGene:Dm.234 SMR:Q0KHQ1 STRING:Q0KHQ1
EnsemblMetazoa:FBtr0091703 EnsemblMetazoa:FBtr0091704
GeneID:3772560 KEGG:dme:Dmel_CG33714 UCSC:CG33714-RA
FlyBase:FBgn0064117 InParanoid:Q0KHQ1 OMA:GHRELRN OrthoDB:EOG4X0K91
NextBio:854180 Uniprot:Q0KHQ1
Length = 90
Score = 102 (41.0 bits), Expect = 3.2e-05, P = 3.2e-05
Identities = 19/60 (31%), Positives = 32/60 (53%)
Query: 130 ALTTTKSNSHSIFIGNIPFXXXXXXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKA 189
A+ + H IF+GN+P+ LR F G + + +I D+ T KG+G+V+F +
Sbjct: 6 AVAKVGKSVHRIFVGNLPWTVGHQELRGYFREFGRVVSANVIFDKRTGCSKGYGFVSFNS 65
>UNIPROTKB|F1P1R2 [details] [associations]
symbol:RBM19 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0040019 "positive regulation of
embryonic development" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0040019
GeneTree:ENSGT00700000104575 EMBL:AADN02050416 IPI:IPI00822335
Ensembl:ENSGALT00000013489 Uniprot:F1P1R2
Length = 621
Score = 125 (49.1 bits), Expect = 3.6e-05, P = 3.6e-05
Identities = 35/117 (29%), Positives = 60/117 (51%)
Query: 100 YVRFKNLESVEKALE-MNGHVIDEHTIRV---DKAL-----------TTTKSNSHSIFIG 144
+V +K ES +KAL + G ++D H + V ++A+ T K + I +
Sbjct: 441 FVEYKKPESAQKALRRLQGCIVDGHKLEVKISERAVRPAVKSSRKKQTVKKQKTSKILVR 500
Query: 145 NIPFXXXXXXLRKAFESCGEIDNVRLIRDQH-TNIGKGFGYVNFKAEEEELRKAFES 200
NIPF +R+ F + GE+ VRL + T +GFG+V+F +++ +KAF +
Sbjct: 501 NIPFQATVREIRELFSTFGELKTVRLPKKMAGTGSHRGFGFVDFLTKQDA-KKAFNA 556
>UNIPROTKB|G3MYJ0 [details] [associations]
symbol:G3MYJ0 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 EMBL:DAAA02029625
Ensembl:ENSBTAT00000064073 Uniprot:G3MYJ0
Length = 625
Score = 125 (49.1 bits), Expect = 3.6e-05, P = 3.6e-05
Identities = 40/147 (27%), Positives = 74/147 (50%)
Query: 85 IKMNKVHEKRTNMNAYVRFKNLESVEKALEM-NGHVIDEHTIRVD----KALTTTKSN-S 138
IK+ + ++ A++ F + E ++AL N I+ IR++ + +S S
Sbjct: 427 IKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPNARSQPS 486
Query: 139 HSIFIGNIPFXXXXXXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEE--LRK 196
++F+ + L+++F+ G I R++ D+ T KGFG+V+F +EE+ ++
Sbjct: 487 KTLFVKGLSEDTTEETLKESFD--GSI-RARIVTDRETGSSKGFGFVDFNSEEDAKAAKE 543
Query: 197 AFESCGEIDNVRLIRDQHTNIGKG-FG 222
A E GEID ++ D G+G FG
Sbjct: 544 AMED-GEIDGNKVTLDWAKPKGEGGFG 569
>UNIPROTKB|G3MXT4 [details] [associations]
symbol:G3MXT4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 EMBL:DAAA02029625
Ensembl:ENSBTAT00000065413 Uniprot:G3MXT4
Length = 630
Score = 125 (49.1 bits), Expect = 3.6e-05, P = 3.6e-05
Identities = 40/147 (27%), Positives = 74/147 (50%)
Query: 85 IKMNKVHEKRTNMNAYVRFKNLESVEKALEM-NGHVIDEHTIRVD----KALTTTKSN-S 138
IK+ + ++ A++ F + E ++AL N I+ IR++ + +S S
Sbjct: 432 IKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPNARSQPS 491
Query: 139 HSIFIGNIPFXXXXXXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEE--LRK 196
++F+ + L+++F+ G I R++ D+ T KGFG+V+F +EE+ ++
Sbjct: 492 KTLFVKGLSEDTTEETLKESFD--GSI-RARIVTDRETGSSKGFGFVDFNSEEDAKAAKE 548
Query: 197 AFESCGEIDNVRLIRDQHTNIGKG-FG 222
A E GEID ++ D G+G FG
Sbjct: 549 AMED-GEIDGNKVTLDWAKPKGEGGFG 574
>UNIPROTKB|G3X7M4 [details] [associations]
symbol:G3X7M4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 EMBL:DAAA02029625
Ensembl:ENSBTAT00000038502 OMA:ENAMEIR Uniprot:G3X7M4
Length = 630
Score = 125 (49.1 bits), Expect = 3.6e-05, P = 3.6e-05
Identities = 40/147 (27%), Positives = 74/147 (50%)
Query: 85 IKMNKVHEKRTNMNAYVRFKNLESVEKALEM-NGHVIDEHTIRVD----KALTTTKSN-S 138
IK+ + ++ A++ F + E ++AL N I+ IR++ + +S S
Sbjct: 432 IKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPNARSQPS 491
Query: 139 HSIFIGNIPFXXXXXXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEE--LRK 196
++F+ + L+++F+ G I R++ D+ T KGFG+V+F +EE+ ++
Sbjct: 492 KTLFVKGLSEDTTEETLKESFD--GSI-RARIVTDRETGSSKGFGFVDFNSEEDAKAAKE 548
Query: 197 AFESCGEIDNVRLIRDQHTNIGKG-FG 222
A E GEID ++ D G+G FG
Sbjct: 549 AMED-GEIDGNKVTLDWAKPKGEGGFG 574
>UNIPROTKB|E1BZE6 [details] [associations]
symbol:LOC100859627 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0071013
GeneTree:ENSGT00700000104376 OMA:QGHDPKE EMBL:AADN02020007
EMBL:AADN02020008 EMBL:AADN02020009 EMBL:AADN02020010
EMBL:AADN02020011 EMBL:AADN02020012 EMBL:AADN02020013
IPI:IPI00812068 ProteinModelPortal:E1BZE6
Ensembl:ENSGALT00000038715 Uniprot:E1BZE6
Length = 380
Score = 122 (48.0 bits), Expect = 3.7e-05, P = 3.7e-05
Identities = 28/111 (25%), Positives = 53/111 (47%)
Query: 84 CIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALT---TTKSNSH- 139
C+ M KR+ +V + +E V+ A+ H +D + +A++ + K +H
Sbjct: 62 CVVMRDPQTKRSRGFGFVTYSCVEEVDAAMSARPHKVDGRVVEPKRAVSREDSVKPGAHL 121
Query: 140 ---SIFIGNIPFXXXXXXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 187
IF+G I LR+ FE G+I+ + ++ D+ + +GF +V F
Sbjct: 122 TVKKIFVGGIKEDTEEYNLREYFEKYGKIETIEVMEDRQSGKKRGFAFVTF 172
>MGI|MGI:1924384 [details] [associations]
symbol:Hnrnpa0 "heterogeneous nuclear ribonucleoprotein A0"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006954 "inflammatory response" evidence=IDA]
[GO:0017091 "AU-rich element binding" evidence=ISO;IDA] [GO:0019901
"protein kinase binding" evidence=ISO] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0032496 "response to
lipopolysaccharide" evidence=IDA] [GO:0070935 "3'-UTR-mediated mRNA
stabilization" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:1924384
GO:GO:0005634 GO:GO:0000166 GO:GO:0032496 GO:GO:0006954
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0030529 eggNOG:COG0724
HSSP:P09651 GO:GO:0070935 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104255 HOGENOM:HOG000234442 CTD:10949
KO:K12894 OrthoDB:EOG4W6NX4 EMBL:AK019388 EMBL:AC165251
IPI:IPI00109813 RefSeq:NP_084148.1 UniGene:Mm.490274
ProteinModelPortal:Q9CX86 SMR:Q9CX86 STRING:Q9CX86
PhosphoSite:Q9CX86 PaxDb:Q9CX86 PRIDE:Q9CX86
Ensembl:ENSMUST00000007980 GeneID:77134 KEGG:mmu:77134
UCSC:uc007qtf.2 InParanoid:Q9CX86 OMA:EDNQHAL ChiTaRS:HNRNPA0
NextBio:346544 Bgee:Q9CX86 Genevestigator:Q9CX86 Uniprot:Q9CX86
Length = 305
Score = 120 (47.3 bits), Expect = 4.2e-05, P = 4.2e-05
Identities = 24/115 (20%), Positives = 58/115 (50%)
Query: 84 CIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALT---TTKSNSHS 140
C+ + KR+ +V + N+E + A+ + H +D +T+ + +A++ + + +H+
Sbjct: 36 CVVVVNPQTKRSRCFGFVTYSNVEEADAAMAASPHAVDGNTVELKRAVSREDSARPGAHA 95
Query: 141 ----IFIGNIPFXXXXXXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEE 191
+F+G + L + F G ++ +I D+ + +GFG+V F++ +
Sbjct: 96 KVKKLFVGGLKGDVAEGDLIEHFSQFGAVEKAEIIADKQSGKKRGFGFVYFQSHD 150
>UNIPROTKB|G4MY43 [details] [associations]
symbol:MGG_01268 "Nuclear localization sequence binding
protein" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CM001232 KO:K11294 RefSeq:XP_003714181.1
ProteinModelPortal:G4MY43 EnsemblFungi:MGG_01268T0 GeneID:2679652
KEGG:mgr:MGG_01268 Uniprot:G4MY43
Length = 486
Score = 123 (48.4 bits), Expect = 4.3e-05, P = 4.3e-05
Identities = 42/151 (27%), Positives = 66/151 (43%)
Query: 65 ETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLE---SVEKALEMNGHVID 121
E+ R + D P +A K H ++ A++ + ++ S KA N D
Sbjct: 275 ESGRSKGFGYVDFATPEEA----EKAHGEK--QGAFIDGREIKVDFSTGKATNSN----D 324
Query: 122 EHTIRVDKALTTTKSNSHSIFIGNIPFXXXXXXLRKAFESCGEIDNVRLIRDQHTNIGKG 181
R K T S ++F+GN+PF + F E+ ++RL +Q + KG
Sbjct: 325 AAGARAKKYGDTVSPESDTLFVGNLPFDADEDSVGAFFSEVAEVKSLRLPTEQESGRRKG 384
Query: 182 FGYVNFKAEEEELRKAFESC-GEIDNVRLIR 211
FGYV F + E+ + AFE G+ N R R
Sbjct: 385 FGYVTFNSVEDA-KSAFEQLNGQSINGRNCR 414
Score = 118 (46.6 bits), Expect = 0.00016, P = 0.00016
Identities = 25/77 (32%), Positives = 39/77 (50%)
Query: 121 DEHTIRVDKALTTTKSNSHSIFIGNIPFXXXXXXLRKAFESCGEIDNVRLIRDQHTNIGK 180
+E K T ++F+GN+ + L + F+ CG + + R+I D+ + K
Sbjct: 221 EEEEAPAKKTKTEESDKPSTLFVGNLSWNVDDAMLAEEFKFCGTVTSARVITDRESGRSK 280
Query: 181 GFGYVNFKAEEEELRKA 197
GFGYV+F A EE KA
Sbjct: 281 GFGYVDF-ATPEEAEKA 296
>RGD|1310071 [details] [associations]
symbol:Rbm39 "RNA binding motif protein 39" species:10116
"Rattus norvegicus" [GO:0005634 "nucleus" evidence=ISO] [GO:0005813
"centrosome" evidence=ISO] [GO:0015630 "microtubule cytoskeleton"
evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1310071
GO:GO:0005634 GO:GO:0005813 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH474050 eggNOG:COG0724
HOVERGEN:HBG057646 TIGRFAMs:TIGR01622 CTD:9584 HOGENOM:HOG000236253
KO:K13091 OrthoDB:EOG4RJG1P IPI:IPI00555302 GeneID:100910882
KEGG:rno:100910882 EMBL:BC091394 RefSeq:NP_001013225.1
RefSeq:XP_003749654.1 UniGene:Rn.8555 SMR:Q5BJP4 STRING:Q5BJP4
GeneID:362251 KEGG:rno:362251 UCSC:RGD:1310071 InParanoid:Q5BJP4
NextBio:679201 Genevestigator:Q5BJP4 Uniprot:Q5BJP4
Length = 524
Score = 91 (37.1 bits), Expect = 4.3e-05, Sum P(2) = 4.3e-05
Identities = 17/47 (36%), Positives = 28/47 (59%)
Query: 183 GYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKVS 229
G ++F E+ LR FE G I++++L+ D T KG+G++ F S
Sbjct: 255 GSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDS 301
Score = 75 (31.5 bits), Expect = 4.3e-05, Sum P(2) = 4.3e-05
Identities = 18/69 (26%), Positives = 36/69 (52%)
Query: 121 DEHTIR--VDKALTTTKSNSHSIFIGNIPFXXXXXXLRKAFESCGEIDNVRLIRDQHTNI 178
D+ +R +D LT + ++ ++F + L + F + G++ +VR+I D+++
Sbjct: 134 DKSPVREPIDN-LTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRR 192
Query: 179 GKGFGYVNF 187
KG YV F
Sbjct: 193 SKGIAYVEF 201
>UNIPROTKB|E1B8K6 [details] [associations]
symbol:NCL "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K11294
GeneTree:ENSGT00550000074656 CTD:4691 EMBL:DAAA02006195
IPI:IPI00971535 RefSeq:NP_001193589.1 UniGene:Bt.107977
UniGene:Bt.108558 UniGene:Bt.7403 UniGene:Bt.79166
ProteinModelPortal:E1B8K6 IntAct:E1B8K6 PRIDE:E1B8K6
Ensembl:ENSBTAT00000021529 GeneID:497013 KEGG:bta:497013
OMA:RLEYSQS NextBio:20865826 Uniprot:E1B8K6
Length = 720
Score = 125 (49.1 bits), Expect = 4.4e-05, P = 4.4e-05
Identities = 40/147 (27%), Positives = 74/147 (50%)
Query: 85 IKMNKVHEKRTNMNAYVRFKNLESVEKALEM-NGHVIDEHTIRVD----KALTTTKSN-S 138
IK+ + ++ A++ F + E ++AL N I+ IR++ + +S S
Sbjct: 522 IKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPNARSQPS 581
Query: 139 HSIFIGNIPFXXXXXXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEE--LRK 196
++F+ + L+++F+ G I R++ D+ T KGFG+V+F +EE+ ++
Sbjct: 582 KTLFVKGLSEDTTEETLKESFD--GSI-RARIVTDRETGSSKGFGFVDFNSEEDAKAAKE 638
Query: 197 AFESCGEIDNVRLIRDQHTNIGKG-FG 222
A E GEID ++ D G+G FG
Sbjct: 639 AMED-GEIDGNKVTLDWAKPKGEGGFG 664
>UNIPROTKB|F6QIA5 [details] [associations]
symbol:RBM39 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005813 "centrosome" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006509
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005813 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622 OMA:AGWDTEI
GeneTree:ENSGT00690000102089 EMBL:DAAA02036526 IPI:IPI01017797
Ensembl:ENSBTAT00000002491 Uniprot:F6QIA5
Length = 525
Score = 91 (37.1 bits), Expect = 4.4e-05, Sum P(2) = 4.4e-05
Identities = 17/47 (36%), Positives = 28/47 (59%)
Query: 183 GYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKVS 229
G ++F E+ LR FE G I++++L+ D T KG+G++ F S
Sbjct: 255 GSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDS 301
Score = 75 (31.5 bits), Expect = 4.4e-05, Sum P(2) = 4.4e-05
Identities = 18/69 (26%), Positives = 36/69 (52%)
Query: 121 DEHTIR--VDKALTTTKSNSHSIFIGNIPFXXXXXXLRKAFESCGEIDNVRLIRDQHTNI 178
D+ +R +D LT + ++ ++F + L + F + G++ +VR+I D+++
Sbjct: 134 DKSPVREPIDN-LTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRR 192
Query: 179 GKGFGYVNF 187
KG YV F
Sbjct: 193 SKGIAYVEF 201
>UNIPROTKB|F2Z5I2 [details] [associations]
symbol:RBM39 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005813 "centrosome" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006509
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005813 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622 OMA:AGWDTEI
GeneTree:ENSGT00690000102089 EMBL:CU210870
Ensembl:ENSSSCT00000007997 ArrayExpress:F2Z5I2 Uniprot:F2Z5I2
Length = 525
Score = 91 (37.1 bits), Expect = 4.4e-05, Sum P(2) = 4.4e-05
Identities = 17/47 (36%), Positives = 28/47 (59%)
Query: 183 GYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKVS 229
G ++F E+ LR FE G I++++L+ D T KG+G++ F S
Sbjct: 255 GSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDS 301
Score = 75 (31.5 bits), Expect = 4.4e-05, Sum P(2) = 4.4e-05
Identities = 18/69 (26%), Positives = 36/69 (52%)
Query: 121 DEHTIR--VDKALTTTKSNSHSIFIGNIPFXXXXXXLRKAFESCGEIDNVRLIRDQHTNI 178
D+ +R +D LT + ++ ++F + L + F + G++ +VR+I D+++
Sbjct: 134 DKSPVREPIDN-LTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRR 192
Query: 179 GKGFGYVNF 187
KG YV F
Sbjct: 193 SKGIAYVEF 201
>UNIPROTKB|E1BRU3 [details] [associations]
symbol:LOC100858247 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005813 "centrosome" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005813 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622
OMA:AGWDTEI GeneTree:ENSGT00690000102089 EMBL:AADN02019511
IPI:IPI00601860 Ensembl:ENSGALT00000002354 Uniprot:E1BRU3
Length = 529
Score = 91 (37.1 bits), Expect = 4.5e-05, Sum P(2) = 4.5e-05
Identities = 17/47 (36%), Positives = 28/47 (59%)
Query: 183 GYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKVS 229
G ++F E+ LR FE G I++++L+ D T KG+G++ F S
Sbjct: 255 GSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDS 301
Score = 75 (31.5 bits), Expect = 4.5e-05, Sum P(2) = 4.5e-05
Identities = 18/69 (26%), Positives = 36/69 (52%)
Query: 121 DEHTIR--VDKALTTTKSNSHSIFIGNIPFXXXXXXLRKAFESCGEIDNVRLIRDQHTNI 178
D+ +R +D LT + ++ ++F + L + F + G++ +VR+I D+++
Sbjct: 134 DKSPVREPIDN-LTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRR 192
Query: 179 GKGFGYVNF 187
KG YV F
Sbjct: 193 SKGIAYVEF 201
>UNIPROTKB|E2R4L0 [details] [associations]
symbol:RBM39 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005813 "centrosome" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005813 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622
CTD:9584 KO:K13091 OMA:AGWDTEI GeneTree:ENSGT00690000102089
EMBL:AAEX03013911 RefSeq:XP_864959.2 ProteinModelPortal:E2R4L0
SMR:E2R4L0 PRIDE:E2R4L0 Ensembl:ENSCAFT00000013241 GeneID:477216
KEGG:cfa:477216 NextBio:20852735 Uniprot:E2R4L0
Length = 530
Score = 91 (37.1 bits), Expect = 4.5e-05, Sum P(2) = 4.5e-05
Identities = 17/47 (36%), Positives = 28/47 (59%)
Query: 183 GYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKVS 229
G ++F E+ LR FE G I++++L+ D T KG+G++ F S
Sbjct: 255 GSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDS 301
Score = 75 (31.5 bits), Expect = 4.5e-05, Sum P(2) = 4.5e-05
Identities = 18/69 (26%), Positives = 36/69 (52%)
Query: 121 DEHTIR--VDKALTTTKSNSHSIFIGNIPFXXXXXXLRKAFESCGEIDNVRLIRDQHTNI 178
D+ +R +D LT + ++ ++F + L + F + G++ +VR+I D+++
Sbjct: 134 DKSPVREPIDN-LTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRR 192
Query: 179 GKGFGYVNF 187
KG YV F
Sbjct: 193 SKGIAYVEF 201
>UNIPROTKB|Q14498 [details] [associations]
symbol:RBM39 "RNA-binding protein 39" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0006396 "RNA processing" evidence=TAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005813
"centrosome" evidence=IDA] [GO:0015630 "microtubule cytoskeleton"
evidence=IDA] InterPro:IPR000504 InterPro:IPR006509
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005813 EMBL:CH471077 GO:GO:0005654 GO:GO:0006355
GO:GO:0008380 GO:GO:0000166 GO:GO:0016607 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0006396
eggNOG:COG0724 EMBL:AL357374 HOVERGEN:HBG057646 TIGRFAMs:TIGR01622
EMBL:L10910 EMBL:L10911 EMBL:AK299678 EMBL:BC131543 EMBL:BC141835
EMBL:BC158172 IPI:IPI00163505 IPI:IPI00215801 IPI:IPI00514831
PIR:I55595 RefSeq:NP_001229528.1 RefSeq:NP_001229529.1
RefSeq:NP_004893.1 RefSeq:NP_909122.1 UniGene:Hs.282901 PDB:2JRS
PDBsum:2JRS ProteinModelPortal:Q14498 SMR:Q14498 IntAct:Q14498
MINT:MINT-5004569 STRING:Q14498 PhosphoSite:Q14498 DMDM:28201880
PaxDb:Q14498 PRIDE:Q14498 Ensembl:ENST00000253363
Ensembl:ENST00000361162 Ensembl:ENST00000528062 GeneID:9584
KEGG:hsa:9584 UCSC:uc002xeb.3 UCSC:uc002xec.3 CTD:9584
GeneCards:GC20M034291 HGNC:HGNC:15923 HPA:HPA001591 MIM:604739
neXtProt:NX_Q14498 PharmGKB:PA34450 HOGENOM:HOG000236253
InParanoid:Q14498 KO:K13091 OMA:AGWDTEI OrthoDB:EOG4RJG1P
PhylomeDB:Q14498 ChiTaRS:RBM39 EvolutionaryTrace:Q14498
GenomeRNAi:9584 NextBio:35953 ArrayExpress:Q14498 Bgee:Q14498
CleanEx:HS_RBM39 Genevestigator:Q14498 GermOnline:ENSG00000131051
Uniprot:Q14498
Length = 530
Score = 91 (37.1 bits), Expect = 4.5e-05, Sum P(2) = 4.5e-05
Identities = 17/47 (36%), Positives = 28/47 (59%)
Query: 183 GYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKVS 229
G ++F E+ LR FE G I++++L+ D T KG+G++ F S
Sbjct: 255 GSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDS 301
Score = 75 (31.5 bits), Expect = 4.5e-05, Sum P(2) = 4.5e-05
Identities = 18/69 (26%), Positives = 36/69 (52%)
Query: 121 DEHTIR--VDKALTTTKSNSHSIFIGNIPFXXXXXXLRKAFESCGEIDNVRLIRDQHTNI 178
D+ +R +D LT + ++ ++F + L + F + G++ +VR+I D+++
Sbjct: 134 DKSPVREPIDN-LTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRR 192
Query: 179 GKGFGYVNF 187
KG YV F
Sbjct: 193 SKGIAYVEF 201
>MGI|MGI:2157953 [details] [associations]
symbol:Rbm39 "RNA binding motif protein 39" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003713
"transcription coactivator activity" evidence=TAS] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=TAS] [GO:0006351 "transcription,
DNA-dependent" evidence=TAS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:2157953
GO:GO:0005634 GO:GO:0005813 GO:GO:0006355 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0006351
EMBL:CH466551 GO:GO:0003723 GO:GO:0003713 eggNOG:COG0724
EMBL:AL929404 HOVERGEN:HBG057646 TIGRFAMs:TIGR01622 CTD:9584
HOGENOM:HOG000236253 KO:K13091 OMA:AGWDTEI OrthoDB:EOG4RJG1P
ChiTaRS:RBM39 EMBL:AY061882 EMBL:AK147076 EMBL:BX649640
EMBL:BC004000 EMBL:BC030493 EMBL:BC086645 IPI:IPI00127763
IPI:IPI00223371 IPI:IPI00223372 RefSeq:NP_573505.2
UniGene:Mm.392436 UniGene:Mm.436932 PDB:2LQ5 PDB:3S6E PDBsum:2LQ5
PDBsum:3S6E ProteinModelPortal:Q8VH51 SMR:Q8VH51 IntAct:Q8VH51
STRING:Q8VH51 PhosphoSite:Q8VH51 PaxDb:Q8VH51 PRIDE:Q8VH51
Ensembl:ENSMUST00000029149 Ensembl:ENSMUST00000109587
Ensembl:ENSMUST00000146297 GeneID:170791 KEGG:mmu:170791
GeneTree:ENSGT00690000102089 InParanoid:Q5RJI0
EvolutionaryTrace:Q8VH51 NextBio:370435 Bgee:Q8VH51
CleanEx:MM_RBM39 Genevestigator:Q8VH51
GermOnline:ENSMUSG00000027620 Uniprot:Q8VH51
Length = 530
Score = 91 (37.1 bits), Expect = 4.5e-05, Sum P(2) = 4.5e-05
Identities = 17/47 (36%), Positives = 28/47 (59%)
Query: 183 GYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKVS 229
G ++F E+ LR FE G I++++L+ D T KG+G++ F S
Sbjct: 255 GSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDS 301
Score = 75 (31.5 bits), Expect = 4.5e-05, Sum P(2) = 4.5e-05
Identities = 18/69 (26%), Positives = 36/69 (52%)
Query: 121 DEHTIR--VDKALTTTKSNSHSIFIGNIPFXXXXXXLRKAFESCGEIDNVRLIRDQHTNI 178
D+ +R +D LT + ++ ++F + L + F + G++ +VR+I D+++
Sbjct: 134 DKSPVREPIDN-LTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRR 192
Query: 179 GKGFGYVNF 187
KG YV F
Sbjct: 193 SKGIAYVEF 201
>UNIPROTKB|F1MA64 [details] [associations]
symbol:Rbm39 "Protein Rbm39" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005813 "centrosome" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1310071 GO:GO:0005634 GO:GO:0005813 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622
KO:K13091 OMA:AGWDTEI GeneTree:ENSGT00690000102089 EMBL:AC118414
IPI:IPI00555302 RefSeq:XP_003749653.1 ProteinModelPortal:F1MA64
SMR:F1MA64 PRIDE:F1MA64 Ensembl:ENSRNOT00000026964 GeneID:100910882
KEGG:rno:100910882 ArrayExpress:F1MA64 Uniprot:F1MA64
Length = 530
Score = 91 (37.1 bits), Expect = 4.5e-05, Sum P(2) = 4.5e-05
Identities = 17/47 (36%), Positives = 28/47 (59%)
Query: 183 GYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKVS 229
G ++F E+ LR FE G I++++L+ D T KG+G++ F S
Sbjct: 255 GSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDS 301
Score = 75 (31.5 bits), Expect = 4.5e-05, Sum P(2) = 4.5e-05
Identities = 18/69 (26%), Positives = 36/69 (52%)
Query: 121 DEHTIR--VDKALTTTKSNSHSIFIGNIPFXXXXXXLRKAFESCGEIDNVRLIRDQHTNI 178
D+ +R +D LT + ++ ++F + L + F + G++ +VR+I D+++
Sbjct: 134 DKSPVREPIDN-LTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRR 192
Query: 179 GKGFGYVNF 187
KG YV F
Sbjct: 193 SKGIAYVEF 201
>UNIPROTKB|F5H6R6 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0043488 "regulation of mRNA stability" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005829 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0048255
EMBL:AC124016 HGNC:HGNC:5036 ChiTaRS:HNRNPD IPI:IPI01012829
ProteinModelPortal:F5H6R6 SMR:F5H6R6 Ensembl:ENST00000541060
ArrayExpress:F5H6R6 Bgee:F5H6R6 Uniprot:F5H6R6
Length = 201
Score = 115 (45.5 bits), Expect = 5.0e-05, P = 5.0e-05
Identities = 29/90 (32%), Positives = 46/90 (51%)
Query: 110 EKALEMNGHVIDEHTIRVDKALTTTKSNSHSIFIGNIPFXXXXXXLRKAFESCGEIDNVR 169
+K ++NG VID + K TK IF+G + +R+ F GE++++
Sbjct: 3 QKEHKLNGKVIDPKRAKAMK----TKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIE 58
Query: 170 LIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
L D TN +GF ++ FK EEE ++K E
Sbjct: 59 LPMDNKTNKRRGFCFITFK-EEEPVKKIME 87
>UNIPROTKB|F1RVC9 [details] [associations]
symbol:HNRNPD "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0043488 "regulation of mRNA stability" evidence=IEA]
[GO:0042162 "telomeric DNA binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0030529 GO:GO:0043488 GO:GO:0042162
GeneTree:ENSGT00700000104347 EMBL:CU627987
Ensembl:ENSSSCT00000010129 OMA:DASSHGW Uniprot:F1RVC9
Length = 202
Score = 115 (45.5 bits), Expect = 5.1e-05, P = 5.1e-05
Identities = 29/90 (32%), Positives = 46/90 (51%)
Query: 110 EKALEMNGHVIDEHTIRVDKALTTTKSNSHSIFIGNIPFXXXXXXLRKAFESCGEIDNVR 169
+K ++NG VID + K TK IF+G + +R+ F GE++++
Sbjct: 4 QKEHKLNGKVIDPKRAKAMK----TKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIE 59
Query: 170 LIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
L D TN +GF ++ FK EEE ++K E
Sbjct: 60 LPMDNKTNKRRGFCFITFK-EEEPVKKIME 88
>UNIPROTKB|E2QXH4 [details] [associations]
symbol:HNRNPA2B1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 EMBL:AAEX03009384
ProteinModelPortal:E2QXH4 Ensembl:ENSCAFT00000004613 Uniprot:E2QXH4
Length = 301
Score = 119 (46.9 bits), Expect = 5.4e-05, P = 5.4e-05
Identities = 29/102 (28%), Positives = 49/102 (48%)
Query: 93 KRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKSN---SH----SIFIGN 145
KR+ +V F ++ V+ A+ H ID + +A+ +S +H +F+G
Sbjct: 7 KRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGG 66
Query: 146 IPFXXXXXXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 187
I LR FE G+ID + +I D+ + +GFG+V F
Sbjct: 67 IKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTF 108
>UNIPROTKB|Q83D11 [details] [associations]
symbol:CBU_0935 "RNA binding protein" species:227377
"Coxiella burnetii RSA 493" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AE016828 GenomeReviews:AE016828_GR HSSP:Q9V535
RefSeq:NP_819948.1 ProteinModelPortal:Q83D11 GeneID:1208828
KEGG:cbu:CBU_0935 PATRIC:17930577 HOGENOM:HOG000026939 OMA:QVHSANI
ProtClustDB:CLSK914425 BioCyc:CBUR227377:GJ7S-926-MONOMER
Uniprot:Q83D11
Length = 129
Score = 100 (40.3 bits), Expect = 5.4e-05, P = 5.4e-05
Identities = 20/78 (25%), Positives = 44/78 (56%)
Query: 126 RVDKALTTTKSNSHSIFIGNIPFXXXXXXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYV 185
R+D + + N+ I++GN+P+ L + F G I++V+++R+ T KG+ +V
Sbjct: 32 RLDDS-SWKSDNNDQIYVGNLPYHVVENDLHQYFSRFGAIESVKIVRNFRTGRSKGYAFV 90
Query: 186 NFKAEEEELRKAFESCGE 203
+ ++ + KA ++ G+
Sbjct: 91 TYVTPKQAV-KALDAHGK 107
>TIGR_CMR|CBU_0935 [details] [associations]
symbol:CBU_0935 "RNA-binding protein" species:227377
"Coxiella burnetii RSA 493" [GO:0008150 "biological_process"
evidence=ND] [GO:0003723 "RNA binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AE016828 GenomeReviews:AE016828_GR HSSP:Q9V535
RefSeq:NP_819948.1 ProteinModelPortal:Q83D11 GeneID:1208828
KEGG:cbu:CBU_0935 PATRIC:17930577 HOGENOM:HOG000026939 OMA:QVHSANI
ProtClustDB:CLSK914425 BioCyc:CBUR227377:GJ7S-926-MONOMER
Uniprot:Q83D11
Length = 129
Score = 100 (40.3 bits), Expect = 5.4e-05, P = 5.4e-05
Identities = 20/78 (25%), Positives = 44/78 (56%)
Query: 126 RVDKALTTTKSNSHSIFIGNIPFXXXXXXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYV 185
R+D + + N+ I++GN+P+ L + F G I++V+++R+ T KG+ +V
Sbjct: 32 RLDDS-SWKSDNNDQIYVGNLPYHVVENDLHQYFSRFGAIESVKIVRNFRTGRSKGYAFV 90
Query: 186 NFKAEEEELRKAFESCGE 203
+ ++ + KA ++ G+
Sbjct: 91 TYVTPKQAV-KALDAHGK 107
>ASPGD|ASPL0000061196 [details] [associations]
symbol:AN10164 species:162425 "Emericella nidulans"
[GO:0034063 "stress granule assembly" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 EMBL:BN001308 Gene3D:3.30.70.330 GO:GO:0003676
ProteinModelPortal:C8VTL0 EnsemblFungi:CADANIAT00001543 OMA:QNTNPIP
Uniprot:C8VTL0
Length = 477
Score = 122 (48.0 bits), Expect = 5.4e-05, P = 5.4e-05
Identities = 39/125 (31%), Positives = 61/125 (48%)
Query: 100 YVRFKNLESVEKALE-MNGHVIDEHTIRVDKAL---TTTK---SNSHSIFIGNIPFXXXX 152
+V F + + E+A++ +NG I + IRV+ A T K SN IF+G++
Sbjct: 136 FVEFDDPGAAERAMQTLNGRRIHQSEIRVNWAYQSNTANKEDTSNHFHIFVGDLSNEVND 195
Query: 153 XXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESC-GEIDNVRLIR 211
L +AF + G + R++ D T +G+G+V F+ E + KA S GE R IR
Sbjct: 196 EVLLQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFR-ERADAEKALTSMDGEWLGSRAIR 254
Query: 212 DQHTN 216
N
Sbjct: 255 CNWAN 259
>WB|WBGene00015943 [details] [associations]
symbol:tiar-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0002009
"morphogenesis of an epithelium" evidence=IMP] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0010171 "body morphogenesis"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0009792
GO:GO:0002009 GO:GO:0040007 GO:GO:0002119 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0010171 GO:GO:0040011 GO:GO:0000003
GO:GO:0003676 EMBL:FO080599 HSSP:P11940
GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
GeneID:173967 KEGG:cel:CELE_C18A3.5 UCSC:C18A3.5f.1 CTD:173967
NextBio:881893 RefSeq:NP_495121.1 ProteinModelPortal:Q95QV8
SMR:Q95QV8 IntAct:Q95QV8 STRING:Q95QV8 PRIDE:Q95QV8
EnsemblMetazoa:C18A3.5a WormBase:C18A3.5a InParanoid:Q95QV8
OMA:WAVEPGQ ArrayExpress:Q95QV8 Uniprot:Q95QV8
Length = 408
Score = 121 (47.7 bits), Expect = 5.5e-05, P = 5.5e-05
Identities = 33/121 (27%), Positives = 63/121 (52%)
Query: 99 AYVRFKNLESVEKALE-MNGHVIDEHTIRVDKALTTTKSNS------H-SIFIGNIPFXX 150
A+V F + +AL+ MN ++ + ++V+ A+ + S H +F+G++
Sbjct: 87 AFVEFSDHGQASQALQTMNKRLLLDREMKVNWAVEPGQQQSKIDTTRHFHVFVGDLSSEV 146
Query: 151 XXXXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLI 210
LR+AF+ G++ + ++IRD +T KG+G+V++ EE R + G+ R I
Sbjct: 147 DNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTI 206
Query: 211 R 211
R
Sbjct: 207 R 207
>ZFIN|ZDB-GENE-050320-86 [details] [associations]
symbol:msi1 "musashi homolog 1 (Drosophila)"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0007417 "central
nervous system development" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-050320-86 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0007417 GO:GO:0003676 EMBL:AB698464 Uniprot:J4C3V8
Length = 349
Score = 120 (47.3 bits), Expect = 5.5e-05, P = 5.5e-05
Identities = 34/120 (28%), Positives = 60/120 (50%)
Query: 93 KRTNMNAYVRFKNLESVEKALEMNGHVIDEHTI--RVD---KALTTTKSNSHSIFIGNIP 147
KR+ +V F + V+K L H +D TI +V +A + + IF+G +
Sbjct: 58 KRSRGFGFVTFVDQAGVDKVLAQTRHELDSKTIDPKVAFPRRAQPKLVTRTKKIFVGGLS 117
Query: 148 FXXXXXXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE-SCGEIDN 206
+++ F+ G++D+ L+ D+ TN +GFG+V F+ E+ + K E EI+N
Sbjct: 118 VNTTIEDVKQYFDQFGKVDDAMLMFDKTTNRHRGFGFVTFE-NEDVVEKVCEIHFHEINN 176
Score = 78 (32.5 bits), Expect = 0.00095, Sum P(2) = 0.00095
Identities = 13/36 (36%), Positives = 26/36 (72%)
Query: 192 EELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK 227
E++++ F+ G++D+ L+ D+ TN +GFG+V F+
Sbjct: 123 EDVKQYFDQFGKVDDAMLMFDKTTNRHRGFGFVTFE 158
Score = 72 (30.4 bits), Expect = 0.00095, Sum P(2) = 0.00095
Identities = 15/47 (31%), Positives = 24/47 (51%)
Query: 141 IFIGNIPFXXXXXXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 187
+FIG + + L+ F GE+ ++RD T +GFG+V F
Sbjct: 22 MFIGGLSWQTTQEGLKDYFCKFGEVKESMVMRDPVTKRSRGFGFVTF 68
>UNIPROTKB|F1NEC5 [details] [associations]
symbol:RBM19 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0040019 "positive regulation of
embryonic development" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0040019 OMA:VFREKNV
GeneTree:ENSGT00700000104575 EMBL:AADN02050416 IPI:IPI00586587
Ensembl:ENSGALT00000037991 Uniprot:F1NEC5
Length = 945
Score = 125 (49.1 bits), Expect = 6.1e-05, P = 6.1e-05
Identities = 35/117 (29%), Positives = 60/117 (51%)
Query: 100 YVRFKNLESVEKALE-MNGHVIDEHTIRV---DKAL-----------TTTKSNSHSIFIG 144
+V +K ES +KAL + G ++D H + V ++A+ T K + I +
Sbjct: 765 FVEYKKPESAQKALRRLQGCIVDGHKLEVKISERAVRPAVKSSRKKQTVKKQKTSKILVR 824
Query: 145 NIPFXXXXXXLRKAFESCGEIDNVRLIRDQH-TNIGKGFGYVNFKAEEEELRKAFES 200
NIPF +R+ F + GE+ VRL + T +GFG+V+F +++ +KAF +
Sbjct: 825 NIPFQATVREIRELFSTFGELKTVRLPKKMAGTGSHRGFGFVDFLTKQDA-KKAFNA 880
>UNIPROTKB|Q9Y4C8 [details] [associations]
symbol:RBM19 "Probable RNA-binding protein 19" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0007275 "multicellular
organismal development" evidence=IEA] [GO:0005694 "chromosome"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=ISS] [GO:0005730
"nucleolus" evidence=ISS;IDA] [GO:0005737 "cytoplasm"
evidence=ISS;IDA] [GO:0040019 "positive regulation of embryonic
development" evidence=ISS] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0007275 GO:GO:0005737 GO:GO:0005694
GO:GO:0005654 GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0040019 eggNOG:COG0724 KO:K14787
HOGENOM:HOG000211156 OMA:VFREKNV EMBL:AB014582 EMBL:AL117547
EMBL:AC009731 EMBL:AC073863 EMBL:AC090669 EMBL:BC004289
EMBL:BC006137 IPI:IPI00000686 PIR:T17297 RefSeq:NP_001140170.1
RefSeq:NP_001140171.1 RefSeq:NP_057280.2 UniGene:Hs.7482 PDB:2DGW
PDBsum:2DGW ProteinModelPortal:Q9Y4C8 SMR:Q9Y4C8 MINT:MINT-1196129
STRING:Q9Y4C8 PhosphoSite:Q9Y4C8 DMDM:308153566 SWISS-2DPAGE:Q9Y4C8
PaxDb:Q9Y4C8 PRIDE:Q9Y4C8 DNASU:9904 Ensembl:ENST00000261741
Ensembl:ENST00000392561 Ensembl:ENST00000545145 GeneID:9904
KEGG:hsa:9904 UCSC:uc001tvm.3 CTD:9904 GeneCards:GC12M114259
HGNC:HGNC:29098 HPA:HPA038860 neXtProt:NX_Q9Y4C8
PharmGKB:PA134886784 HOVERGEN:HBG055637 InParanoid:Q9Y4C8
OrthoDB:EOG4D7Z56 PhylomeDB:Q9Y4C8 ChiTaRS:RBM19
EvolutionaryTrace:Q9Y4C8 GenomeRNAi:9904 NextBio:37345 Bgee:Q9Y4C8
CleanEx:HS_RBM19 Genevestigator:Q9Y4C8 GermOnline:ENSG00000122965
Uniprot:Q9Y4C8
Length = 960
Score = 125 (49.1 bits), Expect = 6.2e-05, P = 6.2e-05
Identities = 34/117 (29%), Positives = 61/117 (52%)
Query: 100 YVRFKNLESVEKAL-EMNGHVIDEHT--IRVDK-----ALTTT-------KSNSHSIFIG 144
+V ++ E +KAL ++ GHV+D H +R+ + A+T K + I +
Sbjct: 778 FVEYRKPEQAQKALKQLQGHVVDGHKLEVRISERATKPAVTLARKKQVPRKQTTSKILVR 837
Query: 145 NIPFXXXXXXLRKAFESCGEIDNVRLIRDQH-TNIGKGFGYVNFKAEEEELRKAFES 200
NIPF +R+ F + GE+ VRL + T +GFG+V+F +++ ++AF +
Sbjct: 838 NIPFQAHSREIRELFSTFGELKTVRLPKKMTGTGTHRGFGFVDFLTKQDA-KRAFNA 893
>SGD|S000001057 [details] [associations]
symbol:MIP6 "Putative RNA-binding protein" species:4932
"Saccharomyces cerevisiae" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA;ISS] [GO:0005643 "nuclear pore" evidence=IPI]
[GO:0006406 "mRNA export from nucleus" evidence=IPI]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 SGD:S000001057 GO:GO:0005737 GO:GO:0000166
EMBL:BK006934 Gene3D:3.30.70.330 GO:GO:0005643 GO:GO:0003723
GO:GO:0006406 EMBL:U10400 PIR:S46788 RefSeq:NP_011879.1
ProteinModelPortal:P38760 SMR:P38760 DIP:DIP-6647N IntAct:P38760
MINT:MINT-644353 STRING:P38760 EnsemblFungi:YHR015W GeneID:856408
KEGG:sce:YHR015W CYGD:YHR015w eggNOG:NOG271400
GeneTree:ENSGT00550000075863 HOGENOM:HOG000000869 OrthoDB:EOG45HW68
NextBio:981953 Genevestigator:P38760 GermOnline:YHR015W
Uniprot:P38760
Length = 659
Score = 123 (48.4 bits), Expect = 6.6e-05, P = 6.6e-05
Identities = 49/171 (28%), Positives = 75/171 (43%)
Query: 33 MALKLKMNP-SLTKSKNHALSSVTSMFKPYGEVETVRFRSV--PVADITLPRKACIKMNK 89
++L K NP S++KS + + FK VR + + D+ L + A +K
Sbjct: 12 ISLNSKQNPRSISKSCPNDKDARQKSFKTISAQALVRVQGAGYKLGDVKL-KDAEVKEKN 70
Query: 90 VHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKSNSHSIFIGNIPFX 149
+K NA K E V + G V K +T T S ++S+FIGN+
Sbjct: 71 SLKKYDCKNATQEKKEQEQVFEKTVAKGSV--------QKYITKT-SKTNSLFIGNLKST 121
Query: 150 XXXXXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEE--EELRKAF 198
LRK F+ ++ ++ RD T G+GY+NFK + E RK F
Sbjct: 122 VTEEMLRKIFKRYQSFESAKVCRDFLTKKSLGYGYLNFKDKNDAESARKEF 172
>ASPGD|ASPL0000040642 [details] [associations]
symbol:AN2989 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 EMBL:BN001306
GO:GO:0003676 HOGENOM:HOG000276232 OMA:ISEMDGK
ProteinModelPortal:C8VIY5 EnsemblFungi:CADANIAT00010091
Uniprot:C8VIY5
Length = 128
Score = 99 (39.9 bits), Expect = 7.0e-05, P = 7.0e-05
Identities = 18/52 (34%), Positives = 30/52 (57%)
Query: 141 IFIGNIPFXXXXXXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEE 192
+FIG + + LR+ F G I+ +++D+ TN +GFG+V F +E E
Sbjct: 4 LFIGGLAWHTTDDVLREGFSRYGTIEEAVVVKDRDTNRSRGFGFVRFASEPE 55
>TAIR|locus:2077427 [details] [associations]
symbol:AT3G08000 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC013483 eggNOG:COG0724
HOGENOM:HOG000276232 HSSP:Q14103 UniGene:At.40270 UniGene:At.28103
EMBL:BT012118 EMBL:BT012373 IPI:IPI00520412 RefSeq:NP_187457.1
ProteinModelPortal:Q9SFB4 SMR:Q9SFB4 EnsemblPlants:AT3G08000.1
GeneID:819991 KEGG:ath:AT3G08000 TAIR:At3g08000 InParanoid:Q9SFB4
OMA:FCTSSSA PhylomeDB:Q9SFB4 ProtClustDB:CLSN2915579
Genevestigator:Q9SFB4 Uniprot:Q9SFB4
Length = 143
Score = 103 (41.3 bits), Expect = 7.5e-05, P = 7.5e-05
Identities = 21/63 (33%), Positives = 36/63 (57%)
Query: 132 TTTKSNSHSIFIGNIPFXXXXXXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEE 191
+++ S S +FIG + + L+ AF S GE+ VR+ D+ + +GFG+V+F E
Sbjct: 34 SSSASPSSKLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEG 93
Query: 192 EEL 194
+ L
Sbjct: 94 DAL 96
>UNIPROTKB|Q4VY17 [details] [associations]
symbol:PABPC1L "EPAB" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:AL008725 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
HOVERGEN:HBG002295 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
EMBL:AL109839 UniGene:Hs.641481 HGNC:HGNC:15797 EMBL:EU190483
IPI:IPI00306870 SMR:Q4VY17 STRING:Q4VY17 Ensembl:ENST00000217074
Ensembl:ENST00000537323 Uniprot:Q4VY17
Length = 330
Score = 98 (39.6 bits), Expect = 7.8e-05, Sum P(2) = 7.8e-05
Identities = 32/108 (29%), Positives = 53/108 (49%)
Query: 90 VHEKRTNMNAYVRFKNLESVEKALE-MNGHVIDEHTIRV-----DKALTTTKSNSHSIFI 143
V +R+ AY+ F+ E+AL+ MN ++ IR+ D L KS +IFI
Sbjct: 46 VATRRSLGYAYINFQQPADAERALDTMNFEMLKGQPIRIMWSQRDPGLR--KSGVGNIFI 103
Query: 144 GNIPFXXXXXXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEE 191
N+ L F + G I + ++ D+H + +GFG+V+F+ E
Sbjct: 104 KNLEDSIDNKALYDTFSTFGNILSCKVACDEHGS--RGFGFVHFETHE 149
Score = 59 (25.8 bits), Expect = 7.8e-05, Sum P(2) = 7.8e-05
Identities = 12/38 (31%), Positives = 26/38 (68%)
Query: 190 EEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK 227
+E+ L+ F G++ +V+++RD ++ + FG+VNF+
Sbjct: 203 DEQGLQDLFSQFGKMLSVKVMRD-NSGHSRCFGFVNFE 239
>UNIPROTKB|F1N4K3 [details] [associations]
symbol:F1N4K3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00700000104376 EMBL:DAAA02019527
IPI:IPI00906169 Ensembl:ENSBTAT00000002951 OMA:HAINGHH
Uniprot:F1N4K3
Length = 329
Score = 118 (46.6 bits), Expect = 8.5e-05, P = 8.5e-05
Identities = 29/111 (26%), Positives = 52/111 (46%)
Query: 84 CIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKSN---SH- 139
C+ + +R+ +V F ++ V+ A+ H ID + +A+ S +H
Sbjct: 38 CVVLRDFASQRSRGCGFVTFSSVTEVDAAMAARPHSIDGRVLEPRRAIPREASGQRGAHW 97
Query: 140 ---SIFIGNIPFXXXXXXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 187
+F+G I LR+ FE G+ID + +I D+ + +GFG+V F
Sbjct: 98 TLKKLFVGGIKEDTEEHHLREYFEKYGKIDAIEIITDRQSGRKRGFGFVTF 148
>UNIPROTKB|E1B908 [details] [associations]
symbol:E1B908 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OMA:RCGEVHR
GeneTree:ENSGT00390000001517 EMBL:DAAA02046256 IPI:IPI00826522
Ensembl:ENSBTAT00000032540 Uniprot:E1B908
Length = 290
Score = 117 (46.2 bits), Expect = 8.6e-05, P = 8.6e-05
Identities = 33/120 (27%), Positives = 57/120 (47%)
Query: 102 RFKNLESVEKALEMNGHVIDEHTI--RVDKALTTTKSNSHSIFIGNIPFXXXXXXLRKAF 159
R +NL+ E+A G ++ + D L +++ SI++GN+ + L F
Sbjct: 123 RVQNLDEGEEAA---GALLARQLLSPETDSPLEKAEADHRSIYVGNVDYGGTAQELEAYF 179
Query: 160 ESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIR--DQHTNI 217
CGEI V ++ D+ + KG+ Y+ F A E + A E I R+I+ + TN+
Sbjct: 180 NHCGEIHRVTILCDKFSGHPKGYAYIEF-ATESSAQAAVELDKSIFRGRVIKVLPKRTNL 238
>DICTYBASE|DDB_G0275027 [details] [associations]
symbol:DDB_G0275027 "SRA stem-loop-interacting
RNA-binding protein, mitochondrial" species:44689 "Dictyostelium
discoideum" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0044351
"macropinocytosis" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0275027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AAFI02000013 eggNOG:COG0724
ProtClustDB:CLSZ2430003 RefSeq:XP_643856.1
ProteinModelPortal:Q86I71 PRIDE:Q86I71 EnsemblProtists:DDB0167377
GeneID:8619907 KEGG:ddi:DDB_G0275027 InParanoid:Q86I71 OMA:QFESKES
Uniprot:Q86I71
Length = 91
Score = 98 (39.6 bits), Expect = 9.1e-05, P = 9.1e-05
Identities = 21/72 (29%), Positives = 39/72 (54%)
Query: 139 HSIFIGNIPFXXXXXXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAF 198
+ IF+ +P+ L+ F G I + ++ D+ T KGFG+V F+++E ++ A
Sbjct: 4 NKIFVTRLPWSVCKEALKNHFSQFGNIKDCYVVLDRVTKRSKGFGFVQFESKES-VQNAI 62
Query: 199 ESCGEIDNVRLI 210
S EI+ +L+
Sbjct: 63 NSDNEINGRKLV 74
>UNIPROTKB|F6VZ39 [details] [associations]
symbol:RBM38 "RNA-binding protein 38" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL109955
HGNC:HGNC:15818 IPI:IPI00927190 ProteinModelPortal:F6VZ39
SMR:F6VZ39 PRIDE:F6VZ39 Ensembl:ENST00000344785 ArrayExpress:F6VZ39
Bgee:F6VZ39 Uniprot:F6VZ39
Length = 123
Score = 98 (39.6 bits), Expect = 9.1e-05, P = 9.1e-05
Identities = 17/45 (37%), Positives = 27/45 (60%)
Query: 141 IFIGNIPFXXXXXXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYV 185
IF+G +P+ LRK FE G+I+ +I D+ T +G+G+V
Sbjct: 13 IFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFV 57
>UNIPROTKB|Q13151 [details] [associations]
symbol:HNRNPA0 "Heterogeneous nuclear ribonucleoprotein A0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0019901 "protein kinase binding" evidence=IPI] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=ISS;TAS] [GO:0006954
"inflammatory response" evidence=ISS] [GO:0032496 "response to
lipopolysaccharide" evidence=ISS] [GO:0003723 "RNA binding"
evidence=TAS] [GO:0006397 "mRNA processing" evidence=TAS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0008380 "RNA splicing"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005654 EMBL:CH471062 GO:GO:0000166 GO:GO:0032496
GO:GO:0006954 Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0017091
GO:GO:0030529 GO:GO:0000398 eggNOG:COG0724 GO:GO:0070935
HOVERGEN:HBG002295 HOGENOM:HOG000234442 EMBL:U23803 EMBL:CR456986
EMBL:BC001008 EMBL:BC007271 EMBL:BC009284 EMBL:BC011972
EMBL:BC012980 EMBL:BC018949 EMBL:BC019271 EMBL:BC028976
EMBL:BC030249 IPI:IPI00011913 RefSeq:NP_006796.1 UniGene:Hs.645902
UniGene:Hs.96996 ProteinModelPortal:Q13151 SMR:Q13151 IntAct:Q13151
MINT:MINT-5001237 STRING:Q13151 PhosphoSite:Q13151 DMDM:8134660
REPRODUCTION-2DPAGE:Q13151 SWISS-2DPAGE:Q13151 PaxDb:Q13151
PeptideAtlas:Q13151 PRIDE:Q13151 DNASU:10949
Ensembl:ENST00000314940 GeneID:10949 KEGG:hsa:10949 UCSC:uc003lbt.3
CTD:10949 GeneCards:GC05M137114 HGNC:HGNC:5030 HPA:HPA036569
MIM:609409 neXtProt:NX_Q13151 PharmGKB:PA162391106
InParanoid:Q13151 KO:K12894 OMA:GPMKQNL OrthoDB:EOG4W6NX4
PhylomeDB:Q13151 GenomeRNAi:10949 NextBio:41601 Bgee:Q13151
CleanEx:HS_HNRNPA0 Genevestigator:Q13151 GermOnline:ENSG00000177733
Uniprot:Q13151
Length = 305
Score = 117 (46.2 bits), Expect = 9.6e-05, P = 9.6e-05
Identities = 24/112 (21%), Positives = 56/112 (50%)
Query: 84 CIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALT---TTKSNSHS 140
C+ + KR+ +V + N+E + A+ + H +D +T+ + +A++ + + +H+
Sbjct: 36 CVVVVNPQTKRSRCFGFVTYSNVEEADAAMAASPHAVDGNTVELKRAVSREDSARPGAHA 95
Query: 141 ----IFIGNIPFXXXXXXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK 188
+F+G + L + F G ++ +I D+ + +GFG+V F+
Sbjct: 96 KVKKLFVGGLKGDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQ 147
>ZFIN|ZDB-GENE-040426-1546 [details] [associations]
symbol:zgc:66127 "zgc:66127" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-1546 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00700000104376 EMBL:CABZ01055593
EMBL:CABZ01000532 EMBL:CABZ01000533 EMBL:CABZ01000534
EMBL:CABZ01000536 EMBL:CABZ01000539 EMBL:CABZ01000540
EMBL:CABZ01085064 EMBL:CABZ01085065 EMBL:CABZ01085066
EMBL:CABZ01085067 EMBL:CABZ01085068 EMBL:CABZ01088246
EMBL:CABZ01088247 EMBL:CABZ01088248 EMBL:CABZ01088249
EMBL:CABZ01088250 EMBL:CABZ01088251 EMBL:CABZ01092715
EMBL:CABZ01092716 EMBL:CABZ01092717 EMBL:CABZ01092718
IPI:IPI00971841 Ensembl:ENSDART00000082448 Bgee:E7FAB3
Uniprot:E7FAB3
Length = 411
Score = 119 (46.9 bits), Expect = 9.6e-05, P = 9.6e-05
Identities = 26/111 (23%), Positives = 58/111 (52%)
Query: 84 CIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALT---TTKSNSHS 140
C+ M + KR+ +V + ++ V+ A++ H +D + +A++ ++K +HS
Sbjct: 67 CVVMRDPNTKRSRGFGFVTYSSVGEVDAAMDARPHKVDGRAVEPKRAVSREDSSKPGAHS 126
Query: 141 ----IFIGNIPFXXXXXXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 187
+F+G I LR+ F G+ID V ++ +++++ +GF ++ F
Sbjct: 127 TVKKMFVGGIKEDTDEEHLREYFGQFGKIDEVNIMTEKNSDKRRGFAFITF 177
>UNIPROTKB|F6RSR1 [details] [associations]
symbol:HNRNPA0 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=IEA] [GO:0032496 "response to lipopolysaccharide"
evidence=IEA] [GO:0019901 "protein kinase binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA] [GO:0006954
"inflammatory response" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0032496
GO:GO:0006954 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0070935
GeneTree:ENSGT00700000104255 OMA:GPMKQNL EMBL:DAAA02020383
IPI:IPI00687625 Ensembl:ENSBTAT00000022514 Uniprot:F6RSR1
Length = 310
Score = 117 (46.2 bits), Expect = 9.9e-05, P = 9.9e-05
Identities = 24/112 (21%), Positives = 56/112 (50%)
Query: 84 CIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALT---TTKSNSHS 140
C+ + KR+ +V + N+E + A+ + H +D +T+ + +A++ + + +H+
Sbjct: 41 CVVVVNPQTKRSRCFGFVTYSNVEEADAAMAASPHAVDGNTVELKRAVSREDSARPGAHA 100
Query: 141 ----IFIGNIPFXXXXXXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK 188
+F+G + L + F G ++ +I D+ + +GFG+V F+
Sbjct: 101 KVKKLFVGGLKGDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQ 152
>UNIPROTKB|E2RBV8 [details] [associations]
symbol:HNRNPA0 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0070935 "3'-UTR-mediated mRNA
stabilization" evidence=IEA] [GO:0032496 "response to
lipopolysaccharide" evidence=IEA] [GO:0019901 "protein kinase
binding" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0006954 "inflammatory response" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 GO:GO:0032496 GO:GO:0006954 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0070935 GeneTree:ENSGT00700000104255 CTD:10949
KO:K12894 OMA:GPMKQNL EMBL:AAEX03007810 RefSeq:XP_538645.2
ProteinModelPortal:E2RBV8 Ensembl:ENSCAFT00000001730 GeneID:481524
KEGG:cfa:481524 NextBio:20856300 Uniprot:E2RBV8
Length = 310
Score = 117 (46.2 bits), Expect = 9.9e-05, P = 9.9e-05
Identities = 24/112 (21%), Positives = 56/112 (50%)
Query: 84 CIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALT---TTKSNSHS 140
C+ + KR+ +V + N+E + A+ + H +D +T+ + +A++ + + +H+
Sbjct: 36 CVVVVNPQTKRSRCFGFVTYSNVEEADAAMAASPHAVDGNTVELKRAVSREDSARPGAHA 95
Query: 141 ----IFIGNIPFXXXXXXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK 188
+F+G + L + F G ++ +I D+ + +GFG+V F+
Sbjct: 96 KVKKLFVGGLKGDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQ 147
>UNIPROTKB|F1M460 [details] [associations]
symbol:F1M460 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00569538
ProteinModelPortal:F1M460 Ensembl:ENSRNOT00000043465
ArrayExpress:F1M460 Uniprot:F1M460
Length = 224
Score = 114 (45.2 bits), Expect = 9.9e-05, P = 9.9e-05
Identities = 28/111 (25%), Positives = 51/111 (45%)
Query: 84 CIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALT---TTKSNSH- 139
C+ M KR+ +V + +E V+ A+ H +D + +A++ + K +H
Sbjct: 37 CVVMRDPQTKRSRGFGFVTYSCVEEVDAAVCARPHKVDGRVVEPKRAVSREDSVKPGAHL 96
Query: 140 ---SIFIGNIPFXXXXXXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 187
IF+G I LR FE G+I+ + ++ D + +GF +V F
Sbjct: 97 TVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDSQSGKKRGFAFVTF 147
>UNIPROTKB|G4MUH3 [details] [associations]
symbol:MGG_07252 "Polyadenylate-binding protein 2"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CM001232 KO:K14396 RefSeq:XP_003715472.1
ProteinModelPortal:G4MUH3 SMR:G4MUH3 EnsemblFungi:MGG_07252T0
GeneID:2682998 KEGG:mgr:MGG_07252 Uniprot:G4MUH3
Length = 193
Score = 112 (44.5 bits), Expect = 9.9e-05, P = 9.9e-05
Identities = 20/51 (39%), Positives = 31/51 (60%)
Query: 137 NSHSIFIGNIPFXXXXXXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 187
+S SIF+GN+ + ++ F+SCG I+ V ++ D+ T KGF YV F
Sbjct: 71 DSRSIFVGNVDYSASPEEIQAHFQSCGSINRVTILLDKFTGQPKGFAYVEF 121
>UNIPROTKB|F1RH94 [details] [associations]
symbol:HNRNPA0 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=IEA] [GO:0032496 "response to lipopolysaccharide"
evidence=IEA] [GO:0019901 "protein kinase binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA] [GO:0006954
"inflammatory response" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0032496
GO:GO:0006954 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0070935
GeneTree:ENSGT00700000104255 OMA:GPMKQNL EMBL:CU468422
Ensembl:ENSSSCT00000015648 Uniprot:F1RH94
Length = 315
Score = 117 (46.2 bits), Expect = 0.00010, P = 0.00010
Identities = 24/112 (21%), Positives = 56/112 (50%)
Query: 84 CIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALT---TTKSNSHS 140
C+ + KR+ +V + N+E + A+ + H +D +T+ + +A++ + + +H+
Sbjct: 41 CVVVVNPQTKRSRCFGFVTYSNVEEADAAMAASPHAVDGNTVELKRAVSREDSARPGAHA 100
Query: 141 ----IFIGNIPFXXXXXXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK 188
+F+G + L + F G ++ +I D+ + +GFG+V F+
Sbjct: 101 KVKKLFVGGLKGDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQ 152
>WB|WBGene00003423 [details] [associations]
symbol:msi-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K14411
GeneTree:ENSGT00700000104255 HSSP:Q61474 EMBL:Z35601 EMBL:AB036738
PIR:T24148 RefSeq:NP_497799.1 UniGene:Cel.19474
ProteinModelPortal:G5EFS2 SMR:G5EFS2 EnsemblMetazoa:R10E9.1.1
EnsemblMetazoa:R10E9.1.2 GeneID:175514 KEGG:cel:CELE_R10E9.1
CTD:175514 WormBase:R10E9.1 OMA:VADKVCE NextBio:888480
Uniprot:G5EFS2
Length = 320
Score = 117 (46.2 bits), Expect = 0.00011, P = 0.00011
Identities = 30/113 (26%), Positives = 54/113 (47%)
Query: 84 CIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKAL---TTTK--SNS 138
C+ M KR ++ F + SV+K L H +D I A T K + +
Sbjct: 74 CMVMRDPATKRARGFGFITFVDPSSVDKVLNNREHELDGKKIDPKVAFPKRTQAKLVTKT 133
Query: 139 HSIFIGNIPFXXXXXXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEE 191
+FIG + +++ FE+ G++++ L+ D+ T +GFG+V F ++E
Sbjct: 134 KKVFIGGLSATSTLEDMKQYFETYGKVEDAMLMFDKATQRHRGFGFVTFDSDE 186
Score = 80 (33.2 bits), Expect = 0.00043, Sum P(2) = 0.00043
Identities = 15/47 (31%), Positives = 25/47 (53%)
Query: 141 IFIGNIPFXXXXXXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 187
+FIG + + LR F GE++ ++RD T +GFG++ F
Sbjct: 47 MFIGGLSWQTTAENLRDYFGRFGEVNECMVMRDPATKRARGFGFITF 93
Score = 72 (30.4 bits), Expect = 0.00043, Sum P(2) = 0.00043
Identities = 12/35 (34%), Positives = 25/35 (71%)
Query: 192 EELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 226
E++++ FE+ G++++ L+ D+ T +GFG+V F
Sbjct: 148 EDMKQYFETYGKVEDAMLMFDKATQRHRGFGFVTF 182
>ZFIN|ZDB-GENE-040426-2401 [details] [associations]
symbol:pabpn1 "poly(A) binding protein, nuclear 1"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040426-2401 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG107480 KO:K14396
HOGENOM:HOG000208465 GeneTree:ENSGT00390000001517 OrthoDB:EOG4N04GD
CTD:8106 EMBL:BX294113 EMBL:BC068437 EMBL:BC079522 IPI:IPI00508307
RefSeq:NP_001098602.1 RefSeq:NP_998424.1 UniGene:Dr.76617
SMR:Q6NUT4 STRING:Q6NUT4 Ensembl:ENSDART00000066722 GeneID:406543
KEGG:dre:406543 InParanoid:Q6NUT4 OMA:MNLSPPP NextBio:20818107
Uniprot:Q6NUT4
Length = 284
Score = 116 (45.9 bits), Expect = 0.00011, P = 0.00011
Identities = 25/97 (25%), Positives = 52/97 (53%)
Query: 102 RFKNLES-VEKALEMNGHVIDEHTIRVDKALTTTKSNSHSIFIGNIPFXXXXXXLRKAFE 160
+ K L++ VEK + ++ + +++ + +++ SI++GN+ + L F
Sbjct: 63 KLKELQNEVEKQMNLSPPPAGPVIMSIEEKI---EADGRSIYVGNVDYGATAEELEAHFH 119
Query: 161 SCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKA 197
CG ++ V ++ D+ T KGF Y+ F A++E +R A
Sbjct: 120 GCGSVNRVTILCDKFTGHPKGFAYIEF-ADKESVRTA 155
>UNIPROTKB|F8VZ49 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 EMBL:AC078778
HGNC:HGNC:5031 ChiTaRS:HNRNPA1 IPI:IPI01022460
ProteinModelPortal:F8VZ49 SMR:F8VZ49 PRIDE:F8VZ49
Ensembl:ENST00000548688 ArrayExpress:F8VZ49 Bgee:F8VZ49
Uniprot:F8VZ49
Length = 231
Score = 114 (45.2 bits), Expect = 0.00011, P = 0.00011
Identities = 28/111 (25%), Positives = 52/111 (46%)
Query: 84 CIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKSN---SH- 139
C+ M + KR+ +V + +E V+ A+ H +D + +A++ S +H
Sbjct: 62 CVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHL 121
Query: 140 ---SIFIGNIPFXXXXXXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 187
IF+G I LR FE G+I+ + ++ D+ + +GF +V F
Sbjct: 122 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTF 172
>FB|FBgn0010263 [details] [associations]
symbol:Rbp9 "RNA-binding protein 9" species:7227 "Drosophila
melanogaster" [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0007293
"germarium-derived egg chamber formation" evidence=TAS] [GO:0005634
"nucleus" evidence=TAS] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0048477
"oogenesis" evidence=IMP] [GO:0036093 "germ cell proliferation"
evidence=IMP] [GO:0060856 "establishment of blood-brain barrier"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0007293 TIGRFAMs:TIGR01661
HSSP:P26378 GO:GO:0060856 FlyBase:FBgn0010263 EMBL:S55886
ProteinModelPortal:Q26293 SMR:Q26293 STRING:Q26293 PRIDE:Q26293
InParanoid:Q26293 ArrayExpress:Q26293 Bgee:Q26293 Uniprot:Q26293
Length = 444
Score = 88 (36.0 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 28/110 (25%), Positives = 49/110 (44%)
Query: 100 YVRFKNLESVEKALE-MNGHVIDEHTIRVDKALTTTKS-NSHSIFIGNIPFXXXXXXLRK 157
+V + E EKA+ +NG + TI+V A +++S ++++ +P L
Sbjct: 155 FVNYVKQEDAEKAINALNGLRLQNKTIKVSIARPSSESIKGANLYVSGLPKNMTQSDLES 214
Query: 158 AFESCGEIDNVRLIRD----QHT-NIGKGFGYVNFKAEEEELRKAFESCG 202
F G+I R++ D +H + KG G++ F E R E G
Sbjct: 215 LFSPYGKIITSRILCDNITGEHAAGLSKGVGFIRFDQRFEADRAIKELNG 264
Score = 72 (30.4 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 17/50 (34%), Positives = 29/50 (58%)
Query: 190 EEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYV---NFKVSFTTLSSI 236
EE L + F G + +V++IRD +N KGFG+V N++ + + S+
Sbjct: 373 EENVLWQLFGPFGAVQSVKVIRDLQSNKCKGFGFVTMTNYEEAVLAIQSL 422
>UNIPROTKB|Q43472 [details] [associations]
symbol:blt801 "Glycine-rich RNA-binding protein blt801"
species:4513 "Hordeum vulgare" [GO:0003697 "single-stranded DNA
binding" evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA]
[GO:0009409 "response to cold" evidence=IDA] [GO:0009737 "response
to abscisic acid stimulus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009737 GO:GO:0000166 GO:GO:0009409 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0003697
EMBL:U49482 PIR:S71453 HSSP:P11940 ProteinModelPortal:Q43472
Gramene:Q43472 Genevestigator:Q43472 Uniprot:Q43472
Length = 161
Score = 107 (42.7 bits), Expect = 0.00013, P = 0.00013
Identities = 25/87 (28%), Positives = 49/87 (56%)
Query: 142 FIGNIPFXXXXXXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESC 201
F+G + + L+ AF G++ + ++I D+ T +GFG+V F A +E +R+A E+
Sbjct: 9 FVGGLRWATDDQSLQNAFSKYGDVIDSKIITDRETGRSRGFGFVTF-ASDEAMRQAIEAM 67
Query: 202 G--EID--NVRL--IRDQHTNIGKGFG 222
++D N+ + + + ++ G GFG
Sbjct: 68 NGQDLDGRNITVNEAQSRRSDGGGGFG 94
>RGD|2321074 [details] [associations]
symbol:LOC100360986 "mCG1035404-like" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:2321074 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
OrthoDB:EOG4HQDKF InterPro:IPR021662 Pfam:PF11627 IPI:IPI00559028
PRIDE:D4ACQ0 Ensembl:ENSRNOT00000002122 UCSC:RGD:2321074
ArrayExpress:D4ACQ0 Uniprot:D4ACQ0
Length = 320
Score = 116 (45.9 bits), Expect = 0.00014, P = 0.00014
Identities = 28/111 (25%), Positives = 52/111 (46%)
Query: 84 CIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALT---TTKSNSH- 139
C+ M KR+ +V + +E V+ A+ H +D + +A++ + K +H
Sbjct: 64 CVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHL 123
Query: 140 ---SIFIGNIPFXXXXXXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 187
IF+G I LR FE G+I+ + ++ D+ + +GF +V F
Sbjct: 124 TVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTF 174
>UNIPROTKB|E7EWI9 [details] [associations]
symbol:HNRNPA3 "Heterogeneous nuclear ribonucleoprotein A3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC079305 HGNC:HGNC:24941
ChiTaRS:HNRNPA3 IPI:IPI00939124 ProteinModelPortal:E7EWI9
SMR:E7EWI9 Ensembl:ENST00000416446 ArrayExpress:E7EWI9 Bgee:E7EWI9
Uniprot:E7EWI9
Length = 322
Score = 116 (45.9 bits), Expect = 0.00014, P = 0.00014
Identities = 28/111 (25%), Positives = 52/111 (46%)
Query: 84 CIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALT---TTKSNSH- 139
C+ M KR+ +V + +E V+ A+ H +D + +A++ + K +H
Sbjct: 42 CVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHL 101
Query: 140 ---SIFIGNIPFXXXXXXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 187
IF+G I LR FE G+I+ + ++ D+ + +GF +V F
Sbjct: 102 TVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTF 152
>UNIPROTKB|E1P5S2 [details] [associations]
symbol:RBM39 "RNA-binding protein 39" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0005813 "centrosome" evidence=IDA]
[GO:0015630 "microtubule cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005813 EMBL:CH471077 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL357374 TIGRFAMs:TIGR01622
UniGene:Hs.282901 HGNC:HGNC:15923 ChiTaRS:RBM39 IPI:IPI01015916
SMR:E1P5S2 Ensembl:ENST00000407261 UCSC:uc002xed.3 Uniprot:E1P5S2
Length = 373
Score = 91 (37.1 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 17/47 (36%), Positives = 28/47 (59%)
Query: 183 GYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKVS 229
G ++F E+ LR FE G I++++L+ D T KG+G++ F S
Sbjct: 98 GSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDS 144
Score = 66 (28.3 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 12/33 (36%), Positives = 21/33 (63%)
Query: 155 LRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 187
L + F + G++ +VR+I D+++ KG YV F
Sbjct: 12 LEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEF 44
>ASPGD|ASPL0000053752 [details] [associations]
symbol:AN1340 species:162425 "Emericella nidulans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000289 "nuclear-transcribed mRNA poly(A) tail
shortening" evidence=IEA] [GO:0010972 "negative regulation of G2/M
transition of mitotic cell cycle" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 EMBL:BN001308 Gene3D:3.30.70.330 GO:GO:0003676
eggNOG:COG0724 KO:K14396 HOGENOM:HOG000208465 EMBL:AACD01000018
OrthoDB:EOG44N22T RefSeq:XP_658944.1 ProteinModelPortal:Q5BDP0
SMR:Q5BDP0 STRING:Q5BDP0 EnsemblFungi:CADANIAT00001272
GeneID:2877113 KEGG:ani:AN1340.2 OMA:SRACCYG Uniprot:Q5BDP0
Length = 187
Score = 110 (43.8 bits), Expect = 0.00015, P = 0.00015
Identities = 35/122 (28%), Positives = 62/122 (50%)
Query: 102 RFKNLES-VEKALEMNGHVIDEHT--IRVDKALTTTKSNSHSIFIGNIPFXXXXXXLRKA 158
R +ES K EM +D+ + ++ DK ++ SIF+GN+ + ++
Sbjct: 33 RVAEMESEAAKLREMQA-TLDQQSESLKEDKE----DIDARSIFVGNVDYGASPEEIQAH 87
Query: 159 FESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAF---ESCGEIDNVRLIRDQHT 215
F+SCG I+ V ++ D+ T KG+ YV F AE + +A ES N++++ + T
Sbjct: 88 FQSCGSINRVTILLDKFTGQPKGYAYVEF-AEPSLVAQALVLNESVFRGRNLKVV-PKRT 145
Query: 216 NI 217
N+
Sbjct: 146 NL 147
>DICTYBASE|DDB_G0293558 [details] [associations]
symbol:pabpc1A "polyadenylate binding protein (PABP)"
species:44689 "Dictyostelium discoideum" [GO:0045335 "phagocytic
vesicle" evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=ISS] [GO:0006378 "mRNA polyadenylation"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA;ISS] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 dictyBase:DDB_G0293558 GO:GO:0005634 GO:GO:0045335
GenomeReviews:CM000155_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006378 EMBL:AAFI02000218 eggNOG:COG0724 GO:GO:0008143
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HSSP:P11940 OMA:ITEKNQQ RefSeq:XP_629007.1
ProteinModelPortal:Q54BM2 SMR:Q54BM2 STRING:Q54BM2 PRIDE:Q54BM2
EnsemblProtists:DDB0233359 GeneID:8629291 KEGG:ddi:DDB_G0293558
ProtClustDB:CLSZ2846557 Uniprot:Q54BM2
Length = 565
Score = 94 (38.1 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 28/103 (27%), Positives = 50/103 (48%)
Query: 93 KRTNMNAYVRFKNLESVEKALE-MNGHVIDEHTIRV---DKALTTTKSNSHSIFIGNIPF 148
+R+ AYV + N E+AL+ +N I R+ + + KS ++FI N+
Sbjct: 48 RRSLSYAYVNYYNGADAERALDTLNNTPIRGKACRIMWSQRDPSLRKSGVGNVFIKNLDK 107
Query: 149 XXXXXXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEE 191
L F + G I + +++ D N KGFG+V+++ +E
Sbjct: 108 GIDHKALYDTFSAFGNILSCKVVTDDG-NSSKGFGFVHYETQE 149
Score = 91 (37.1 bits), Expect = 0.00087, Sum P(2) = 0.00087
Identities = 25/99 (25%), Positives = 50/99 (50%)
Query: 100 YVRFKNLESVEKAL-EMNGHVIDEHTIRVDKALTT------TKSNSHSIFIGNIPFXXXX 152
+V ++ ES +KA+ ++NG +I+ + V ++ T+ ++F N+
Sbjct: 142 FVHYETQESADKAIAKVNGMMINGQKVFVGPFKSSKERGQPTEVKFTNVFFKNLSEDVGP 201
Query: 153 XXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEE 191
L++ + GEI N+ ++ D KGFG+ NF++ E
Sbjct: 202 DQLKELLQQYGEITNITIMADDKGK-SKGFGFANFESAE 239
Score = 67 (28.6 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 12/36 (33%), Positives = 22/36 (61%)
Query: 192 EELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK 227
++L++ + GEI N+ ++ D KGFG+ NF+
Sbjct: 202 DQLKELLQQYGEITNITIMADDKGK-SKGFGFANFE 236
Score = 63 (27.2 bits), Expect = 0.00040, Sum P(2) = 0.00040
Identities = 11/35 (31%), Positives = 20/35 (57%)
Query: 190 EEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYV 224
+ ++LR+ F G I + +++D KGFG+V
Sbjct: 296 DNDKLREVFSQFGTITSAIVMKDDKATTSKGFGFV 330
>TAIR|locus:2119495 [details] [associations]
symbol:GR-RBP2 "AT4G13850" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005739
"mitochondrion" evidence=ISM;IDA] [GO:0009409 "response to cold"
evidence=IGI;IEP;IMP] [GO:0003690 "double-stranded DNA binding"
evidence=IDA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0009414 "response to water deprivation"
evidence=IEP] [GO:0005524 "ATP binding" evidence=IDA] [GO:0001072
"RNA binding transcription antitermination factor activity"
evidence=IDA] [GO:0006970 "response to osmotic stress"
evidence=IMP] [GO:0009631 "cold acclimation" evidence=IMP]
[GO:0009651 "response to salt stress" evidence=IMP] [GO:0009845
"seed germination" evidence=IMP] [GO:0031564 "transcription
antitermination" evidence=IDA] [GO:0005507 "copper ion binding"
evidence=IDA] [GO:0005794 "Golgi apparatus" evidence=RCA]
[GO:0006364 "rRNA processing" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005739 GO:GO:0005524 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0005507 GO:GO:0003723
GO:GO:0006970 GO:GO:0009845 GO:GO:0003690 GO:GO:0003697
eggNOG:COG0724 EMBL:AL035528 EMBL:AL161537 HOGENOM:HOG000276232
EMBL:AJ002892 EMBL:AY072361 EMBL:BT002197 EMBL:AY085621 EMBL:X69377
EMBL:Z18189 IPI:IPI00527583 PIR:S31443 PIR:T05254
RefSeq:NP_193121.1 UniGene:At.15585 UniGene:At.2
ProteinModelPortal:Q9SVM8 SMR:Q9SVM8 IntAct:Q9SVM8 STRING:Q9SVM8
PaxDb:Q9SVM8 PRIDE:Q9SVM8 ProMEX:Q9SVM8 EnsemblPlants:AT4G13850.1
GeneID:827019 KEGG:ath:AT4G13850 GeneFarm:3949 TAIR:At4g13850
InParanoid:Q9SVM8 OMA:ISEMDGK PhylomeDB:Q9SVM8 ProtClustDB:PLN03134
Genevestigator:Q9SVM8 Uniprot:Q9SVM8
Length = 158
Score = 106 (42.4 bits), Expect = 0.00016, P = 0.00016
Identities = 28/92 (30%), Positives = 43/92 (46%)
Query: 125 IRVDKALTTTKSNSHSIFIGNIPFXXXXXXLRKAFESCGEIDNVRLIRDQHTNIGKGFGY 184
+ V L + + S +FIG + + LR AF G++ + ++I D+ T +GFG+
Sbjct: 21 VPVTSMLGSLRLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGF 80
Query: 185 VNFKAEEEELRKAFESCGEIDNVRLIRDQHTN 216
VNF E E G+ N R IR N
Sbjct: 81 VNFNDEGAATAAISEMDGKELNGRHIRVNPAN 112
>UNIPROTKB|D4ACJ8 [details] [associations]
symbol:Hnrnpa1 "Heterogeneous nuclear ribonucleoprotein A1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:69234 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 IPI:IPI00780243 Ensembl:ENSRNOT00000055282
ArrayExpress:D4ACJ8 Uniprot:D4ACJ8
Length = 268
Score = 114 (45.2 bits), Expect = 0.00016, P = 0.00016
Identities = 28/111 (25%), Positives = 52/111 (46%)
Query: 84 CIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKSN---SH- 139
C+ M + KR+ +V + +E V+ A+ H +D + +A++ S +H
Sbjct: 43 CVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHL 102
Query: 140 ---SIFIGNIPFXXXXXXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 187
IF+G I LR FE G+I+ + ++ D+ + +GF +V F
Sbjct: 103 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTF 153
>UNIPROTKB|F1LNG4 [details] [associations]
symbol:Hnrnpa3 "Heterogeneous nuclear ribonucleoprotein A3"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00567786 Ensembl:ENSRNOT00000050735 ArrayExpress:F1LNG4
Uniprot:F1LNG4
Length = 357
Score = 116 (45.9 bits), Expect = 0.00017, P = 0.00017
Identities = 28/111 (25%), Positives = 52/111 (46%)
Query: 84 CIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALT---TTKSNSH- 139
C+ M KR+ +V + +E V+ A+ H +D + +A++ + K +H
Sbjct: 42 CVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHL 101
Query: 140 ---SIFIGNIPFXXXXXXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 187
IF+G I LR FE G+I+ + ++ D+ + +GF +V F
Sbjct: 102 TVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTF 152
>ZFIN|ZDB-GENE-030912-14 [details] [associations]
symbol:hnrnpa1 "heterogeneous nuclear
ribonucleoprotein A1" species:7955 "Danio rerio" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030912-14 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529 eggNOG:COG0724
HSSP:P09651 HOVERGEN:HBG002295 HOGENOM:HOG000234442 KO:K12741
OrthoDB:EOG4HQDKF CTD:3178 EMBL:BC044442 IPI:IPI00500189
RefSeq:NP_956398.1 UniGene:Dr.67768 ProteinModelPortal:Q803K3
SMR:Q803K3 STRING:Q803K3 PRIDE:Q803K3 GeneID:378453 KEGG:dre:378453
InParanoid:Q803K3 NextBio:20813776 ArrayExpress:Q803K3 Bgee:Q803K3
Uniprot:Q803K3
Length = 422
Score = 117 (46.2 bits), Expect = 0.00017, P = 0.00017
Identities = 35/152 (23%), Positives = 70/152 (46%)
Query: 84 CIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALT---TTKSNSHS 140
C+ M + KR+ +V + +++ V +++ H +D + +A++ ++K +H+
Sbjct: 62 CVVMKDPNTKRSRGFGFVTYSSVDEVNASMDARPHKVDGRLVEPKRAVSREDSSKPFAHT 121
Query: 141 ----IFIGNIPFXXXXXXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRK 196
IF+G I LR F+ G+I+ V ++ D T +GF +V F + R
Sbjct: 122 TVKKIFVGGIKDDTEENHLRDYFDQFGKIEVVEIMVDHKTGNKRGFAFVTFDDHDSVDRI 181
Query: 197 AFESCGEIDN----VR--LIRDQHTNIGKGFG 222
+ ++ VR L + + N G+G G
Sbjct: 182 VIQKYHTVNGHNCEVRKALSKQEMANTGRGGG 213
>UNIPROTKB|E2RJS4 [details] [associations]
symbol:E2RJS4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:AAEX03011786
Ensembl:ENSCAFT00000024319 Uniprot:E2RJS4
Length = 330
Score = 89 (36.4 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 18/52 (34%), Positives = 27/52 (51%)
Query: 141 IFIGNIPFXXXXXXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEE 192
+FIG + F LR FE G + + +RD +T +GFG+V + EE
Sbjct: 30 LFIGGLSFETTNESLRSHFEQLGMLTDCVEMRDPNTKHSRGFGFVTYATMEE 81
Score = 66 (28.3 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 13/37 (35%), Positives = 22/37 (59%)
Query: 190 EEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 226
EE LR FE G+I+ + ++ D+ + +GF +V F
Sbjct: 133 EEYHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTF 169
>ASPGD|ASPL0000076731 [details] [associations]
symbol:AN4865 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:BN001303 EMBL:AACD01000084 eggNOG:COG0724
KO:K11294 OrthoDB:EOG422DTZ RefSeq:XP_662469.1
ProteinModelPortal:Q5B3L5 STRING:Q5B3L5
EnsemblFungi:CADANIAT00005540 GeneID:2872664 KEGG:ani:AN4865.2
HOGENOM:HOG000195050 OMA:SARIMTE Uniprot:Q5B3L5
Length = 524
Score = 118 (46.6 bits), Expect = 0.00018, P = 0.00018
Identities = 31/94 (32%), Positives = 45/94 (47%)
Query: 134 TKSNSHSIFIGNIPFXXXXXXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEE 193
T S ++F+GN+PF + + F G + +RL D + KGFGYV + + +E
Sbjct: 379 TSPESDTLFVGNLPFSANEDSVHEVFGPQGNVLGIRLPTDMESGRPKGFGYVQYSSVDEA 438
Query: 194 LRKAFESC--GEIDN--VRL-IRDQHTNIGKGFG 222
RKA+ EID +RL N G G G
Sbjct: 439 -RKAYNELQGAEIDGRPIRLDFSTPRANNGGGGG 471
Score = 112 (44.5 bits), Expect = 0.00090, P = 0.00090
Identities = 30/111 (27%), Positives = 52/111 (46%)
Query: 107 ESVEKALEMNGHVIDEHTIRVDKALTTTKSNSHSIFIGNIPFXXXXXXLRKAFESCGEID 166
E +K + +E K T + S ++F+GN+ + L + FE GE+
Sbjct: 245 EDSDKPADSKKRKAEEEPAAASKKSKTEEGASANLFVGNLSWNVTEEWLHQEFEQFGEL- 303
Query: 167 NVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGE--IDNVRLIRDQHT 215
+ R++ ++ T +GFGYV F + KA+E+ E ID ++ D T
Sbjct: 304 SARIMTERDTGRSRGFGYVEF-TNAADAAKAYEAMKEHEIDGRKINLDYAT 353
>UNIPROTKB|E2RFV7 [details] [associations]
symbol:HNRNPA3 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K12741 GeneTree:ENSGT00700000104376 CTD:220988 OMA:QGHDPKE
EMBL:AAEX03017802 RefSeq:XP_543761.2 ProteinModelPortal:E2RFV7
Ensembl:ENSCAFT00000021410 GeneID:608074 KEGG:cfa:608074
Uniprot:E2RFV7
Length = 378
Score = 116 (45.9 bits), Expect = 0.00019, P = 0.00019
Identities = 28/111 (25%), Positives = 52/111 (46%)
Query: 84 CIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALT---TTKSNSH- 139
C+ M KR+ +V + +E V+ A+ H +D + +A++ + K +H
Sbjct: 64 CVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHL 123
Query: 140 ---SIFIGNIPFXXXXXXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 187
IF+G I LR FE G+I+ + ++ D+ + +GF +V F
Sbjct: 124 TVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTF 174
>UNIPROTKB|P51991 [details] [associations]
symbol:HNRNPA3 "Heterogeneous nuclear ribonucleoprotein A3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC;TAS] [GO:0030529
"ribonucleoprotein complex" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] Reactome:REACT_71
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH471058
GO:GO:0000398 GO:GO:0071013 eggNOG:COG0724 HOVERGEN:HBG002295
EMBL:AC079305 HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF
HPA:HPA001666 EMBL:AY363225 EMBL:BC112027 EMBL:BC113470
IPI:IPI00419373 IPI:IPI00455134 PIR:I52962 RefSeq:NP_919223.1
UniGene:Hs.516539 ProteinModelPortal:P51991 SMR:P51991
IntAct:P51991 MINT:MINT-4999802 STRING:P51991 PhosphoSite:P51991
DMDM:51338779 PaxDb:P51991 PRIDE:P51991 Ensembl:ENST00000392524
Ensembl:ENST00000411529 Ensembl:ENST00000435711 GeneID:220988
KEGG:hsa:220988 UCSC:uc002ulb.1 CTD:220988 GeneCards:GC02P178077
HGNC:HGNC:24941 MIM:605372 neXtProt:NX_P51991 PharmGKB:PA162391169
InParanoid:P51991 OMA:QGHDPKE PhylomeDB:P51991 ChiTaRS:HNRNPA3
GenomeRNAi:220988 NextBio:91133 PMAP-CutDB:P51991
ArrayExpress:P51991 Bgee:P51991 CleanEx:HS_HNRNPA3
Genevestigator:P51991 GermOnline:ENSG00000170144 Uniprot:P51991
Length = 378
Score = 116 (45.9 bits), Expect = 0.00019, P = 0.00019
Identities = 28/111 (25%), Positives = 52/111 (46%)
Query: 84 CIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALT---TTKSNSH- 139
C+ M KR+ +V + +E V+ A+ H +D + +A++ + K +H
Sbjct: 64 CVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHL 123
Query: 140 ---SIFIGNIPFXXXXXXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 187
IF+G I LR FE G+I+ + ++ D+ + +GF +V F
Sbjct: 124 TVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTF 174
>UNIPROTKB|F2Z5B4 [details] [associations]
symbol:HNRNPA3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0071013 KO:K12741
GeneTree:ENSGT00700000104376 OMA:QGHDPKE EMBL:CU862048
RefSeq:XP_003133549.1 ProteinModelPortal:F2Z5B4 SMR:F2Z5B4
Ensembl:ENSSSCT00000017409 GeneID:100516520 KEGG:ssc:100516520
Uniprot:F2Z5B4
Length = 379
Score = 116 (45.9 bits), Expect = 0.00019, P = 0.00019
Identities = 28/111 (25%), Positives = 52/111 (46%)
Query: 84 CIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALT---TTKSNSH- 139
C+ M KR+ +V + +E V+ A+ H +D + +A++ + K +H
Sbjct: 64 CVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHL 123
Query: 140 ---SIFIGNIPFXXXXXXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 187
IF+G I LR FE G+I+ + ++ D+ + +GF +V F
Sbjct: 124 TVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTF 174
>RGD|727807 [details] [associations]
symbol:Hnrnpa3 "heterogeneous nuclear ribonucleoprotein A3"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IMP] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0005730 "nucleolus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0035770
"ribonucleoprotein granule" evidence=IDA] [GO:0043005 "neuron
projection" evidence=IDA] [GO:0051028 "mRNA transport"
evidence=IMP] [GO:0051033 "RNA transmembrane transporter activity"
evidence=IMP] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:727807 GO:GO:0005634
GO:GO:0005737 GO:GO:0008380 GO:GO:0000166 GO:GO:0003729
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0043005 GO:GO:0005681
GO:GO:0051028 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF CTD:220988
EMBL:AY363226 EMBL:AY363227 EMBL:BC081878 IPI:IPI00382376
IPI:IPI00464458 RefSeq:NP_001104764.1 RefSeq:NP_001104765.1
RefSeq:NP_937765.1 UniGene:Rn.107690 UniGene:Rn.99947
ProteinModelPortal:Q6URK4 SMR:Q6URK4 STRING:Q6URK4
PhosphoSite:Q6URK4 PRIDE:Q6URK4 GeneID:362152 KEGG:rno:362152
UCSC:RGD:727807 InParanoid:Q6URK4 NextBio:678824
ArrayExpress:Q6URK4 Genevestigator:Q6URK4 GO:GO:0035770
GO:GO:0051033 Uniprot:Q6URK4
Length = 379
Score = 116 (45.9 bits), Expect = 0.00019, P = 0.00019
Identities = 28/111 (25%), Positives = 52/111 (46%)
Query: 84 CIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALT---TTKSNSH- 139
C+ M KR+ +V + +E V+ A+ H +D + +A++ + K +H
Sbjct: 64 CVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHL 123
Query: 140 ---SIFIGNIPFXXXXXXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 187
IF+G I LR FE G+I+ + ++ D+ + +GF +V F
Sbjct: 124 TVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTF 174
>UNIPROTKB|E1BEG2 [details] [associations]
symbol:HNRNPA3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 OMA:QGHDPKE EMBL:DAAA02004160
IPI:IPI00690667 Ensembl:ENSBTAT00000028757 Uniprot:E1BEG2
Length = 380
Score = 116 (45.9 bits), Expect = 0.00019, P = 0.00019
Identities = 28/111 (25%), Positives = 52/111 (46%)
Query: 84 CIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALT---TTKSNSH- 139
C+ M KR+ +V + +E V+ A+ H +D + +A++ + K +H
Sbjct: 64 CVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHL 123
Query: 140 ---SIFIGNIPFXXXXXXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 187
IF+G I LR FE G+I+ + ++ D+ + +GF +V F
Sbjct: 124 TVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTF 174
>ZFIN|ZDB-GENE-050327-97 [details] [associations]
symbol:rbm39b "RNA binding motif protein 39b"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-050327-97
GO:GO:0005634 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG057646 TIGRFAMs:TIGR01622
HOGENOM:HOG000236253 GeneTree:ENSGT00690000102089 EMBL:CR550308
EMBL:BC091794 IPI:IPI00498276 RefSeq:NP_001014392.1
UniGene:Dr.76447 SMR:Q58ER0 Ensembl:ENSDART00000061328
GeneID:541556 KEGG:dre:541556 CTD:541556 InParanoid:Q58ER0
OMA:NCLASST NextBio:20879330 Uniprot:Q58ER0
Length = 539
Score = 91 (37.1 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 16/44 (36%), Positives = 28/44 (63%)
Query: 183 GYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 226
G ++F E+ LR FE G+I+ ++L+ D T KG+G+++F
Sbjct: 269 GSLHFNITEDMLRGIFEPFGKIEGIQLMMDSETGRSKGYGFISF 312
Score = 69 (29.3 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 17/69 (24%), Positives = 35/69 (50%)
Query: 121 DEHTIR--VDKALTTTKSNSHSIFIGNIPFXXXXXXLRKAFESCGEIDNVRLIRDQHTNI 178
D+ +R +D L+ + ++ ++F + L F + G++ +VR+I D+++
Sbjct: 148 DKSPVRQPIDN-LSPEERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRMISDRNSRR 206
Query: 179 GKGFGYVNF 187
KG YV F
Sbjct: 207 SKGIAYVEF 215
>UNIPROTKB|E2RF37 [details] [associations]
symbol:E2RF37 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074566 EMBL:AAEX03000660
Ensembl:ENSCAFT00000003502 OMA:MAMCSAN Uniprot:E2RF37
Length = 330
Score = 115 (45.5 bits), Expect = 0.00019, P = 0.00019
Identities = 28/115 (24%), Positives = 55/115 (47%)
Query: 84 CIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKSN---SH- 139
C+ M + K + ++ + +E V+ A+ + H +DE + + KA++ S +H
Sbjct: 9 CVVMRDPNTKCSRGFEFLTYATVEDVDAAMNVRPHKVDERVVELKKAVSREDSQRPGAHL 68
Query: 140 ---SIFIGNIPFXXXXXXLRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEE 191
IF+G I LR FE G+I+ + ++ D+ + + F +V F A +
Sbjct: 69 TVKKIFVGGIKEDTEQHHLRDYFEHYGKIEVIEIMTDRGSGNKRSFAFVTFDAHD 123
WARNING: HSPs involving 93 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.320 0.134 0.382 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 239 233 0.00086 113 3 11 22 0.38 33
32 0.43 36
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 343
No. of states in DFA: 588 (63 KB)
Total size of DFA: 162 KB (2095 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:01
No. of threads or processors used: 24
Search cpu time: 20.48u 0.08s 20.56t Elapsed: 00:00:18
Total cpu time: 20.51u 0.09s 20.60t Elapsed: 00:00:20
Start: Thu Aug 15 13:47:21 2013 End: Thu Aug 15 13:47:41 2013
WARNINGS ISSUED: 2