RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy14193
(239 letters)
>d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 80
Score = 55.7 bits (134), Expect = 3e-11
Identities = 16/53 (30%), Positives = 29/53 (54%)
Query: 140 SIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEE 192
S+++G++ + E L + F G I ++R+ RD T G+ YVNF+ +
Sbjct: 2 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPAD 54
Score = 38.0 bits (88), Expect = 7e-05
Identities = 15/45 (33%), Positives = 23/45 (51%)
Query: 183 GYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK 227
G ++ E L + F G I ++R+ RD T G+ YVNF+
Sbjct: 6 GDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ 50
Score = 37.2 bits (86), Expect = 1e-04
Identities = 17/78 (21%), Positives = 30/78 (38%), Gaps = 18/78 (23%)
Query: 54 VTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKAL 113
+ F P G + ++R + +R+ AYV F+ E+AL
Sbjct: 17 LYEKFSPAGPILSIRV-----------------CRDMITRRSLGYAYVNFQQPADAERAL 59
Query: 114 E-MNGHVIDEHTIRVDKA 130
+ MN VI +R+ +
Sbjct: 60 DTMNFDVIKGKPVRIMWS 77
>d1uawa_ d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 77
Score = 54.6 bits (131), Expect = 7e-11
Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 141 IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFES 200
+FIG + ++ +E LR+ F GE+ ++RD T +GFG+V F ++ + K
Sbjct: 3 MFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFM-DQAGVDKVLAQ 61
Query: 201 CGEIDNVRLIR 211
+ + I
Sbjct: 62 SRHELDSKTID 72
Score = 45.0 bits (106), Expect = 3e-07
Identities = 15/51 (29%), Positives = 22/51 (43%)
Query: 80 PRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKA 130
K C+ M KR+ +V F + V+K L + H +D TI A
Sbjct: 26 EVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVA 76
Score = 36.5 bits (84), Expect = 3e-04
Identities = 15/45 (33%), Positives = 26/45 (57%)
Query: 183 GYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK 227
G ++++ +E LR+ F GE+ ++RD T +GFG+V F
Sbjct: 6 GGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFM 50
>d1x0fa1 d.58.7.1 (A:183-257) Nuclear ribonucleoprotein D0 (AUF1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 54.2 bits (130), Expect = 1e-10
Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 141 IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFES 200
IF+G + + EE++R+ F GE++++ L D TN +GF ++ FK EEE ++K E
Sbjct: 2 IFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFK-EEEPVKKIMEK 60
Query: 201 CGEIDNVRLIR 211
+
Sbjct: 61 KYHNVGLSKCE 71
Score = 41.1 bits (96), Expect = 5e-06
Identities = 8/51 (15%), Positives = 17/51 (33%)
Query: 80 PRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKA 130
++ + ++ FK E V+K +E H + + A
Sbjct: 25 EVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVA 75
Score = 35.7 bits (82), Expect = 4e-04
Identities = 15/45 (33%), Positives = 27/45 (60%)
Query: 183 GYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK 227
G ++ EE++R+ F GE++++ L D TN +GF ++ FK
Sbjct: 5 GGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFK 49
>d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19, Rbm19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 94
Score = 54.2 bits (130), Expect = 1e-10
Identities = 24/67 (35%), Positives = 41/67 (61%), Gaps = 2/67 (2%)
Query: 135 KSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQ-HTNIGKGFGYVNFKAEEEE 193
K + I + NIPF+A + E+R+ F + GE+ VRL + T +GFG+V+F +++
Sbjct: 5 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFI-TKQD 63
Query: 194 LRKAFES 200
+KAF +
Sbjct: 64 AKKAFNA 70
Score = 38.0 bits (88), Expect = 9e-05
Identities = 5/53 (9%), Positives = 15/53 (28%), Gaps = 2/53 (3%)
Query: 80 PRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALE--MNGHVIDEHTIRVDKA 130
+ + +V F + +KA + + + ++ A
Sbjct: 35 LKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLEWA 87
Score = 36.8 bits (85), Expect = 3e-04
Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 183 GYVNFKAEEEELRKAFESCGEIDNVRLIRDQ-HTNIGKGFGYVNFK 227
+ F+A + E+R+ F + GE+ VRL + T +GFG+V+F
Sbjct: 14 RNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFI 59
>d2cq4a1 d.58.7.1 (A:132-232) RNA binding protein 23 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 52.3 bits (125), Expect = 9e-10
Identities = 15/79 (18%), Positives = 35/79 (44%)
Query: 131 LTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAE 190
L+ + ++ ++F + +L F + G++ +VR+I D+++ KG YV F
Sbjct: 11 LSPEERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEI 70
Query: 191 EEELRKAFESCGEIDNVRL 209
+ + + V +
Sbjct: 71 QSVPLAIGLTGQRLLGVPI 89
Score = 38.1 bits (88), Expect = 1e-04
Identities = 11/49 (22%), Positives = 23/49 (46%)
Query: 82 KACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKA 130
+ ++ + +R+ AYV F ++SV A+ + G + I V +
Sbjct: 46 RDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQAS 94
Score = 35.4 bits (81), Expect = 0.001
Identities = 12/45 (26%), Positives = 23/45 (51%)
Query: 183 GYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK 227
+ + +L F + G++ +VR+I D+++ KG YV F
Sbjct: 24 MQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFC 68
>d2cqga1 d.58.7.1 (A:96-185) TAR DNA-binding protein 43, TDP-43
{Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 51.5 bits (123), Expect = 1e-09
Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 136 SNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELR 195
+ + + +P++ E++L++ F + GE+ V++ +D T KGFG+V F E E
Sbjct: 6 QKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFT-EYETQV 64
Query: 196 KAFESCGEIDNVRL 209
K ID
Sbjct: 65 KVMSQRHMIDGRWC 78
Score = 34.2 bits (78), Expect = 0.002
Identities = 9/60 (15%), Positives = 20/60 (33%), Gaps = 4/60 (6%)
Query: 74 VADITLPRKACIKMNKVHEKRTNMN---AYVRFKNLESVEKALEMNGHVIDEHTIRVDKA 130
+ + + + + +T + +VRF E+ K + H+ID
Sbjct: 25 LKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS-QRHMIDGRWCDCKLP 83
Score = 33.0 bits (75), Expect = 0.006
Identities = 15/45 (33%), Positives = 27/45 (60%)
Query: 183 GYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK 227
+ +K E++L++ F + GE+ V++ +D T KGFG+V F
Sbjct: 14 LGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFT 58
>d1hd0a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein d0
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 51.1 bits (122), Expect = 1e-09
Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 141 IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFES 200
+FIG + ++ +++L+ F GE+ + L D T +GFG+V FK E E + K +
Sbjct: 2 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFK-ESESVDKVMDQ 60
Query: 201 CGEIDNVRLIR 211
N ++I
Sbjct: 61 KEHKLNGKVID 71
Score = 41.1 bits (96), Expect = 6e-06
Identities = 11/54 (20%), Positives = 21/54 (38%), Gaps = 3/54 (5%)
Query: 80 PRKACIKMNKVHEKRTNMN---AYVRFKNLESVEKALEMNGHVIDEHTIRVDKA 130
+ + T + +V FK ESV+K ++ H ++ I +A
Sbjct: 22 KFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRA 75
Score = 33.0 bits (75), Expect = 0.005
Identities = 14/45 (31%), Positives = 25/45 (55%)
Query: 183 GYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK 227
G +++ +++L+ F GE+ + L D T +GFG+V FK
Sbjct: 5 GGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFK 49
>d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 53.1 bits (126), Expect = 2e-09
Identities = 22/93 (23%), Positives = 43/93 (46%), Gaps = 1/93 (1%)
Query: 141 IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFES 200
+FIG + FE +E LR FE G + + ++RD +T +GFG+V + EE+ A +
Sbjct: 9 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYA-TVEEVDAAMNA 67
Query: 201 CGEIDNVRLIRDQHTNIGKGFGYVNFKVSFTTL 233
+ R++ + + ++ +
Sbjct: 68 RPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKI 100
Score = 52.7 bits (125), Expect = 3e-09
Identities = 34/166 (20%), Positives = 63/166 (37%), Gaps = 25/166 (15%)
Query: 53 SVTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKA 112
S+ S F+ +G + C+ M + KR+ +V + +E V+ A
Sbjct: 22 SLRSHFEQWGTLTD-----------------CVVMRDPNTKRSRGFGFVTYATVEEVDAA 64
Query: 113 LEMNGHVIDEHTIRVDKA-------LTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEI 165
+ H +D + +A IF+G I + EE LR FE G+I
Sbjct: 65 MNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKI 124
Query: 166 DNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCGEIDNVRLIR 211
+ + ++ D+ + +GF +V F + + + K N
Sbjct: 125 EVIEIMTDRGSGKKRGFAFVTFD-DHDSVDKIVIQKYHTVNGHNCE 169
Score = 40.0 bits (92), Expect = 8e-05
Identities = 13/49 (26%), Positives = 22/49 (44%)
Query: 84 CIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALT 132
M + A+V F + +SV+K + H ++ H V KAL+
Sbjct: 127 IEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALS 175
>d1b7fa2 d.58.7.1 (A:205-289) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 85
Score = 50.7 bits (121), Expect = 2e-09
Identities = 13/53 (24%), Positives = 27/53 (50%)
Query: 140 SIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEE 192
++++ N+P +++L F G I ++RD+ T +G +V + EE
Sbjct: 8 NLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREE 60
Score = 34.9 bits (80), Expect = 0.001
Identities = 9/45 (20%), Positives = 19/45 (42%)
Query: 183 GYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK 227
+ +++L F G I ++RD+ T +G +V +
Sbjct: 12 TNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYN 56
Score = 32.6 bits (74), Expect = 0.006
Identities = 8/35 (22%), Positives = 17/35 (48%), Gaps = 3/35 (8%)
Query: 99 AYVRFKNLESVEKALE-MNGHVID--EHTIRVDKA 130
A+VR+ E ++A+ +N + + + V A
Sbjct: 51 AFVRYNKREEAQEAISALNNVIPEGGSQPLSVRLA 85
>d1x4ba1 d.58.7.1 (A:8-110) Heterogeneous nuclear ribonucleoproteins
A2/B1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 50.8 bits (121), Expect = 3e-09
Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Query: 135 KSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEEL 194
K +FIG + FE EE LR +E G++ + ++RD + +GFG+V F + E+
Sbjct: 17 KEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTF-SSMAEV 75
Query: 195 RKAFESCGEIDNVRLIR 211
A + + R++
Sbjct: 76 DAAMAARPHSIDGRVVE 92
Score = 38.9 bits (90), Expect = 6e-05
Identities = 8/50 (16%), Positives = 19/50 (38%), Gaps = 3/50 (6%)
Query: 84 CIKMNKVHEKRTNMN---AYVRFKNLESVEKALEMNGHVIDEHTIRVDKA 130
+ + + + +V F ++ V+ A+ H ID + +A
Sbjct: 47 LTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRA 96
Score = 35.4 bits (81), Expect = 0.001
Identities = 15/45 (33%), Positives = 27/45 (60%)
Query: 183 GYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK 227
G ++F+ EE LR +E G++ + ++RD + +GFG+V F
Sbjct: 26 GGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFS 70
>d2cqpa1 d.58.7.1 (A:917-1002) RNA-binding protein 12 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 86
Score = 50.4 bits (120), Expect = 4e-09
Identities = 13/80 (16%), Positives = 28/80 (35%)
Query: 132 TTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEE 191
++ K I + N+PF +E+ F I ++ + G V F++ +
Sbjct: 3 SSGKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRD 62
Query: 192 EELRKAFESCGEIDNVRLIR 211
E + R ++
Sbjct: 63 EATAAVIDLNDRPIGSRKVK 82
Score = 32.0 bits (72), Expect = 0.013
Identities = 7/45 (15%), Positives = 14/45 (31%)
Query: 183 GYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK 227
+ F +E+ F I ++ + G V F+
Sbjct: 15 QNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFE 59
Score = 30.4 bits (68), Expect = 0.047
Identities = 6/52 (11%), Positives = 17/52 (32%), Gaps = 1/52 (1%)
Query: 80 PRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALE-MNGHVIDEHTIRVDKA 130
+ + + A V F++ + A+ +N I +++
Sbjct: 35 VIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLG 86
>d1h2vz_ d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 48.8 bits (116), Expect = 1e-08
Identities = 13/56 (23%), Positives = 29/56 (51%)
Query: 137 NSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEE 192
S ++++GN+ F EE++ + F G+I + + D+ GF +V + + +
Sbjct: 6 KSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRAD 61
Score = 35.3 bits (81), Expect = 8e-04
Identities = 12/52 (23%), Positives = 20/52 (38%), Gaps = 1/52 (1%)
Query: 80 PRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALE-MNGHVIDEHTIRVDKA 130
K I +K +V + + E A+ +NG +D+ IR D
Sbjct: 33 DIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWD 84
Score = 31.5 bits (71), Expect = 0.022
Identities = 11/45 (24%), Positives = 22/45 (48%)
Query: 183 GYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK 227
G ++F EE++ + F G+I + + D+ GF +V +
Sbjct: 13 GNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYY 57
>d2u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 85
Score = 47.7 bits (113), Expect = 3e-08
Identities = 12/55 (21%), Positives = 28/55 (50%)
Query: 138 SHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEE 192
+H +FIG +P ++++++ S G + L++D T + KG+ + +
Sbjct: 1 AHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINV 55
Score = 39.6 bits (92), Expect = 2e-05
Identities = 9/52 (17%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Query: 80 PRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALE-MNGHVIDEHTIRVDKA 130
P KA + + A+ + ++ ++A+ +NG + + + V +A
Sbjct: 27 PLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 78
Score = 29.2 bits (65), Expect = 0.10
Identities = 8/45 (17%), Positives = 22/45 (48%)
Query: 183 GYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK 227
G + ++++++ S G + L++D T + KG+ + +
Sbjct: 7 GGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYV 51
>d1l3ka1 d.58.7.1 (A:8-91) Nuclear ribonucleoprotein A1 (RNP A1,
UP1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 84
Score = 47.3 bits (112), Expect = 4e-08
Identities = 21/73 (28%), Positives = 35/73 (47%)
Query: 137 NSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRK 196
+FIG + FE +E LR FE G + + ++RD +T +GFG+V + EE
Sbjct: 5 QLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAA 64
Query: 197 AFESCGEIDNVRL 209
++D +
Sbjct: 65 MNARPHKVDGRVV 77
Score = 41.9 bits (98), Expect = 3e-06
Identities = 11/53 (20%), Positives = 24/53 (45%)
Query: 80 PRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALT 132
C+ M + KR+ +V + +E V+ A+ H +D + +A++
Sbjct: 32 TLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVS 84
Score = 31.9 bits (72), Expect = 0.014
Identities = 15/45 (33%), Positives = 27/45 (60%)
Query: 183 GYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK 227
G ++F+ +E LR FE G + + ++RD +T +GFG+V +
Sbjct: 12 GGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYA 56
>d1wf0a_ d.58.7.1 (A:) TAR DNA-binding protein 43, TDP-43 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 46.6 bits (110), Expect = 7e-08
Identities = 15/74 (20%), Positives = 32/74 (43%), Gaps = 6/74 (8%)
Query: 136 SNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELR 195
S S +F+G + E+ELR+ F G++ +V + + F +V F +++ +
Sbjct: 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKPFR-----AFAFVTFA-DDQIAQ 56
Query: 196 KAFESCGEIDNVRL 209
I + +
Sbjct: 57 SLCGEDLIIKGISV 70
Score = 36.2 bits (83), Expect = 5e-04
Identities = 9/49 (18%), Positives = 17/49 (34%), Gaps = 1/49 (2%)
Query: 90 VHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKSNS 138
K A+V F + + + +I ++ + A SNS
Sbjct: 36 FIPKPFRAFAFVTFADDQIAQSLC-GEDLIIKGISVHISNAEPKHNSNS 83
Score = 25.4 bits (55), Expect = 2.4
Identities = 11/45 (24%), Positives = 19/45 (42%), Gaps = 5/45 (11%)
Query: 183 GYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK 227
G E+ELR+ F G++ +V + + F +V F
Sbjct: 11 GRCTGDMTEDELREFFSQYGDVMDVFIPKPFR-----AFAFVTFA 50
>d1b7fa1 d.58.7.1 (A:123-204) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 82
Score = 46.5 bits (110), Expect = 8e-08
Identities = 14/56 (25%), Positives = 31/56 (55%)
Query: 137 NSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEE 192
++ ++ + +P + + EL F + G I+ R++RD T G+ +V+F +E +
Sbjct: 1 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMD 56
Score = 35.7 bits (82), Expect = 5e-04
Identities = 10/48 (20%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Query: 84 CIKMNKVHEKRTNMNAYVRFKNLESVEKALE-MNGHVIDEHTIRVDKA 130
C M + A+V F + ++A++ +NG + ++V A
Sbjct: 32 CRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYA 79
Score = 29.6 bits (66), Expect = 0.077
Identities = 13/45 (28%), Positives = 22/45 (48%)
Query: 183 GYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK 227
Y+ + EL F + G I+ R++RD T G+ +V+F
Sbjct: 8 NYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFT 52
>d1u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 45.9 bits (108), Expect = 1e-07
Identities = 14/74 (18%), Positives = 28/74 (37%), Gaps = 5/74 (6%)
Query: 141 IFIGNIPFEAEEEELRKAFESCGEIDNVRL-----IRDQHTNIGKGFGYVNFKAEEEELR 195
+++GNIPF EE + F + + + + N K F ++ F++ +E +
Sbjct: 4 LYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQ 63
Query: 196 KAFESCGEIDNVRL 209
L
Sbjct: 64 AMAFDGIIFQGQSL 77
Score = 34.0 bits (77), Expect = 0.003
Identities = 5/58 (8%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Query: 73 PVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKA 130
+ +T + ++++ + A++ F++++ +A+ +G + ++++ +
Sbjct: 27 RLGGLTQAPGNPVLAVQINQDK--NFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRP 82
>d1x4ga1 d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 96
Score = 46.1 bits (109), Expect = 2e-07
Identities = 8/51 (15%), Positives = 25/51 (49%)
Query: 125 IRVDKALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQH 175
+R + + + + +++ G I ++ +R+ F G+I +R+ ++
Sbjct: 5 LRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKG 55
Score = 32.6 bits (74), Expect = 0.010
Identities = 10/45 (22%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Query: 87 MNKVHEKRTNMNAYVRFKNLESVEKALE-MNGHVIDEHTIRVDKA 130
+ ++ ++VRF ES A+ +NG I+ H ++
Sbjct: 45 IMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWG 89
>d1x5ua1 d.58.7.1 (A:7-99) Splicing factor 3B subunit 4 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 93
Score = 45.8 bits (108), Expect = 2e-07
Identities = 14/58 (24%), Positives = 32/58 (55%)
Query: 135 KSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEE 192
++ ++++G + + E L + F G + N + +D+ T +G+G+V F +EE+
Sbjct: 6 RNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEED 63
Score = 35.8 bits (82), Expect = 7e-04
Identities = 10/48 (20%), Positives = 19/48 (39%), Gaps = 1/48 (2%)
Query: 84 CIKMNKVHEKRTNMNAYVRFKNLESVEKALE-MNGHVIDEHTIRVDKA 130
+ +V F + E + A++ M+ + IRV+KA
Sbjct: 39 THMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKA 86
>d2cqca1 d.58.7.1 (A:109-191) Arginine/serine-rich splicing factor
10 {Human (Homo sapiens) [TaxId: 9606]}
Length = 83
Score = 45.5 bits (107), Expect = 2e-07
Identities = 13/55 (23%), Positives = 28/55 (50%)
Query: 138 SHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEE 192
+ + + + E +LR+ F G I +V ++ DQ + +GF +V F+ ++
Sbjct: 9 NCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDD 63
Score = 34.3 bits (78), Expect = 0.002
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 80 PRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALE-MNGHVIDEHTIRV 127
P + +R+ A+V F+N++ ++A E NG +D IRV
Sbjct: 35 PIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 83
Score = 28.9 bits (64), Expect = 0.14
Identities = 13/45 (28%), Positives = 24/45 (53%)
Query: 183 GYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK 227
++ E +LR+ F G I +V ++ DQ + +GF +V F+
Sbjct: 15 FGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFE 59
>d2cpfa1 d.58.7.1 (A:362-446) Probable RNA-binding protein 19, Rbm19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 85
Score = 45.0 bits (106), Expect = 3e-07
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Query: 141 IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQH---TNIGKGFGYVNFKAEEE 192
+FI N+ F EE L+ F G I + + + ++ + GFG+V +K E+
Sbjct: 1 LFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQ 55
Score = 40.4 bits (94), Expect = 1e-05
Identities = 18/83 (21%), Positives = 32/83 (38%), Gaps = 15/83 (18%)
Query: 54 VTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKAL 113
+ +F G +++ K NK + +V +K E +KAL
Sbjct: 15 LKGVFSKVGAIKSCTI--------------SKKKNKAGVLLSMGFGFVEYKKPEQAQKAL 60
Query: 114 E-MNGHVIDEHTIRVDKALTTTK 135
+ + GH +D H + V + TK
Sbjct: 61 KQLQGHTVDGHKLEVRISERATK 83
Score = 29.6 bits (66), Expect = 0.073
Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Query: 183 GYVNFKAEEEELRKAFESCGEIDNVRLIRDQH---TNIGKGFGYVNFK 227
+NF EE L+ F G I + + + ++ + GFG+V +K
Sbjct: 4 KNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYK 51
>d1cvja2 d.58.7.1 (A:91-179) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 89
Score = 45.0 bits (106), Expect = 3e-07
Identities = 15/64 (23%), Positives = 30/64 (46%)
Query: 135 KSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEEL 194
KS +IFI N+ + + L F + G I + +++ D++ + G GF + + E
Sbjct: 5 KSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERA 64
Query: 195 RKAF 198
+
Sbjct: 65 IEKM 68
Score = 34.6 bits (79), Expect = 0.002
Identities = 11/41 (26%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 91 HEKRTNMNAYVRFKNLESVEKALE-MNGHVIDEHTIRVDKA 130
E + +V F+ E+ E+A+E MNG ++++ + V +
Sbjct: 43 DENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRF 83
>d1wf2a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoproteins
C1/C2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 98
Score = 44.9 bits (106), Expect = 4e-07
Identities = 14/62 (22%), Positives = 26/62 (41%), Gaps = 9/62 (14%)
Query: 132 TTTKSNSHSIFIGNI-PFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAE 190
T +S + +FIGN+ ++ ++ F G+I + KGF +V + E
Sbjct: 9 TDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCS--------VHKGFAFVQYVNE 60
Query: 191 EE 192
Sbjct: 61 RN 62
Score = 34.5 bits (79), Expect = 0.002
Identities = 7/33 (21%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 99 AYVRFKNLESVEKALE-MNGHVIDEHTIRVDKA 130
A+V++ N + A+ +G +I + ++ A
Sbjct: 53 AFVQYVNERNARAAVAGEDGRMIAGQVLDINLA 85
Score = 31.0 bits (70), Expect = 0.028
Identities = 7/41 (17%), Positives = 15/41 (36%), Gaps = 8/41 (19%)
Query: 187 FKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK 227
++ ++ F G+I + KGF +V +
Sbjct: 26 LVVKKSDVEAIFSKYGKIVGCS--------VHKGFAFVQYV 58
>d2cqda1 d.58.7.1 (A:1-103) RNA-binding region containing protein 1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 45.1 bits (106), Expect = 4e-07
Identities = 20/74 (27%), Positives = 34/74 (45%)
Query: 136 SNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELR 195
+ IF+G +P+ + LRK FE G+I+ +I D+ T +G+G+V R
Sbjct: 8 TTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAER 67
Query: 196 KAFESCGEIDNVRL 209
+ ID +
Sbjct: 68 ACKDPNPIIDGRKA 81
Score = 36.3 bits (83), Expect = 5e-04
Identities = 9/55 (16%), Positives = 20/55 (36%)
Query: 84 CIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKSNS 138
+ + ++ +V + + E+A + +ID V+ A K S
Sbjct: 40 AVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANVNLAYLGAKPRS 94
Score = 25.1 bits (54), Expect = 4.6
Identities = 14/45 (31%), Positives = 24/45 (53%)
Query: 183 GYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK 227
G + + + LRK FE G+I+ +I D+ T +G+G+V
Sbjct: 16 GGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMA 60
>d1x5ta1 d.58.7.1 (A:8-90) Splicing factor 3B subunit 4 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 83
Score = 44.4 bits (104), Expect = 4e-07
Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
Query: 141 IFIGNIPFEAEEEELRKAFESCGEI-DNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
IFIGN+ E +E+ L F + G I +++RD T KG+ ++NF + A E
Sbjct: 1 IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFA-SFDASDAAIE 59
Query: 200 SCG--EIDNVRL 209
+ + N +
Sbjct: 60 AMNGQYLCNRPI 71
Score = 33.6 bits (76), Expect = 0.003
Identities = 11/48 (22%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
Query: 84 CIKMNKVHEKRTNMNAYVRFKNLESVEKALE-MNGHVIDEHTIRVDKA 130
M + A++ F + ++ + A+E MNG + I V A
Sbjct: 29 PKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 76
Score = 30.1 bits (67), Expect = 0.055
Identities = 13/46 (28%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 183 GYVNFKAEEEELRKAFESCGEI-DNVRLIRDQHTNIGKGFGYVNFK 227
G ++ + +E+ L F + G I +++RD T KG+ ++NF
Sbjct: 4 GNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFA 49
>d1fxla2 d.58.7.1 (A:119-203) Hu antigen D (Hud) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 85
Score = 44.3 bits (104), Expect = 5e-07
Identities = 13/51 (25%), Positives = 26/51 (50%)
Query: 141 IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEE 191
+++ +P ++EL + F G I R++ DQ T + +G G++ F
Sbjct: 9 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRI 59
Score = 30.0 bits (67), Expect = 0.051
Identities = 12/45 (26%), Positives = 22/45 (48%)
Query: 183 GYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK 227
+ ++EL + F G I R++ DQ T + +G G++ F
Sbjct: 12 SGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFD 56
>d1whwa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 99
Score = 44.7 bits (105), Expect = 5e-07
Identities = 18/57 (31%), Positives = 28/57 (49%)
Query: 136 SNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEE 192
S S +F+ N+ + + EE+L K F + G + + D T KGF +V F E
Sbjct: 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEH 62
Score = 37.4 bits (86), Expect = 2e-04
Identities = 10/55 (18%), Positives = 19/55 (34%), Gaps = 1/55 (1%)
Query: 84 CIKMNKVHEKRTNMNAYVRFKNLESVEKALE-MNGHVIDEHTIRVDKALTTTKSN 137
K+ A+V F E KA ++G V + V + +++
Sbjct: 38 LHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPSTIKKEAS 92
Score = 25.8 bits (56), Expect = 1.9
Identities = 13/45 (28%), Positives = 22/45 (48%)
Query: 183 GYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK 227
+++ + EE+L K F + G + + D T KGF +V F
Sbjct: 14 RNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFM 58
>d1l3ka2 d.58.7.1 (A:103-181) Nuclear ribonucleoprotein A1 (RNP A1,
UP1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 79
Score = 43.9 bits (103), Expect = 6e-07
Identities = 17/69 (24%), Positives = 33/69 (47%)
Query: 141 IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFES 200
IF+G I + EE LR FE G+I+ + ++ D+ + +GF +V F + + +
Sbjct: 5 IFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQK 64
Query: 201 CGEIDNVRL 209
++
Sbjct: 65 YHTVNGHNC 73
Score = 39.7 bits (92), Expect = 2e-05
Identities = 13/48 (27%), Positives = 21/48 (43%)
Query: 84 CIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKAL 131
M + A+V F + +SV+K + H ++ H V KAL
Sbjct: 32 IEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKAL 79
Score = 26.6 bits (58), Expect = 0.77
Identities = 14/45 (31%), Positives = 24/45 (53%)
Query: 183 GYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK 227
G + EE LR FE G+I+ + ++ D+ + +GF +V F
Sbjct: 8 GGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFD 52
>d1x4aa1 d.58.7.1 (A:9-103) Splicing factor, arginine/serine-rich 1,
SFRS1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 95
Score = 43.9 bits (103), Expect = 8e-07
Identities = 12/56 (21%), Positives = 25/56 (44%), Gaps = 3/56 (5%)
Query: 136 SNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEE 191
+N I++GN+P + +++ F G I ++ L + F +V F+
Sbjct: 12 NNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGG---PPFAFVEFEDPR 64
Score = 34.3 bits (78), Expect = 0.002
Identities = 9/45 (20%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 87 MNKVHEKRTNMNAYVRFKNLESVEKALE-MNGHVIDEHTIRVDKA 130
++ + + A+V F++ E A+ +G+ D + +RV+
Sbjct: 44 IDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFP 88
>d2msta_ d.58.7.1 (A:) Neural RNA-binding protein Musashi-1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 75
Score = 43.2 bits (101), Expect = 1e-06
Identities = 12/51 (23%), Positives = 21/51 (41%)
Query: 80 PRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKA 130
+ M R +V F++ + VEK E++ H I+ + KA
Sbjct: 25 KVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKA 75
Score = 43.2 bits (101), Expect = 1e-06
Identities = 21/71 (29%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 141 IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFES 200
IF+G + E+++ FE G++D+ L+ D+ TN +GFG+V F+ E+ + K E
Sbjct: 2 IFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFE-SEDIVEKVCEI 60
Query: 201 CGEIDNVRLIR 211
N +++
Sbjct: 61 HFHEINNKMVE 71
Score = 26.6 bits (58), Expect = 0.82
Identities = 15/45 (33%), Positives = 28/45 (62%)
Query: 183 GYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK 227
G ++ E+++ FE G++D+ L+ D+ TN +GFG+V F+
Sbjct: 5 GGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFE 49
>d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 78
Score = 43.0 bits (101), Expect = 1e-06
Identities = 7/52 (13%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Query: 141 IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEE 192
+ + N+ F + ++++ F G + + + G V+F+ + +
Sbjct: 3 LLVSNLDFGVSDADIQELFAEFGTLKKAAVHY-DRSGRSLGTADVHFERKAD 53
Score = 35.3 bits (81), Expect = 7e-04
Identities = 9/47 (19%), Positives = 18/47 (38%), Gaps = 1/47 (2%)
Query: 85 IKMNKVHEKRTNMNAYVRFKNLESVEKALE-MNGHVIDEHTIRVDKA 130
++ R+ A V F+ KA++ NG +D + +
Sbjct: 30 AAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLV 76
>d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 114
Score = 43.9 bits (103), Expect = 1e-06
Identities = 15/64 (23%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
Query: 137 NSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRK 196
+ ++I N+P++ EE+ F G I IR +T +G YV ++ + + +
Sbjct: 6 VNRILYIRNLPYKITAEEMYDIFGKYGPIRQ---IRVGNTPETRGTAYVVYE-DIFDAKN 61
Query: 197 AFES 200
A +
Sbjct: 62 ACDH 65
Score = 38.1 bits (88), Expect = 1e-04
Identities = 12/81 (14%), Positives = 32/81 (39%), Gaps = 8/81 (9%)
Query: 84 CIKMNKVHEKRTNMNAYVRFKNLESVEKALE-MNGHVIDEHTIRVDKALTTTKSNSHSIF 142
++ + T AYV ++++ + A + ++G + + V ++
Sbjct: 34 IRQIRVGNTPETRGTAYVVYEDIFDAKNACDHLSGFNVCNRYLVVLYY-NANRAFQ---- 88
Query: 143 IGNIPFEAEEEELRKAFESCG 163
+ + +EE+L+ E G
Sbjct: 89 --KMDTKKKEEQLKLLKEKYG 107
Score = 29.2 bits (65), Expect = 0.16
Identities = 12/45 (26%), Positives = 19/45 (42%), Gaps = 3/45 (6%)
Query: 183 GYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK 227
+ +K EE+ F G I IR +T +G YV ++
Sbjct: 13 RNLPYKITAEEMYDIFGKYGPIRQ---IRVGNTPETRGTAYVVYE 54
>d2cqba1 d.58.7.1 (A:1-89) Peptidyl-prolyl cis-trans isomerase E,
N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 89
Score = 43.5 bits (102), Expect = 1e-06
Identities = 14/57 (24%), Positives = 31/57 (54%)
Query: 136 SNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEE 192
+ +++G + E +++ L AF G+I ++++ D T +GF +V F+ E+
Sbjct: 3 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAED 59
Score = 35.8 bits (82), Expect = 5e-04
Identities = 12/50 (24%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
Query: 82 KACIKMNKVHEKRTNMNAYVRFKNLESVEKALE-MNGHVIDEHTIRVDKA 130
++ A+V F+ E A++ MN + TIRV+ A
Sbjct: 33 TDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 82
Score = 27.7 bits (61), Expect = 0.46
Identities = 12/45 (26%), Positives = 25/45 (55%)
Query: 183 GYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK 227
G + + +++ L AF G+I ++++ D T +GF +V F+
Sbjct: 11 GGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFE 55
>d1wg5a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H'
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 43.7 bits (102), Expect = 1e-06
Identities = 16/77 (20%), Positives = 28/77 (36%), Gaps = 1/77 (1%)
Query: 135 KSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEEL 194
+N + + +PF +EE+ + F + N + G +V F +E
Sbjct: 12 TANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFA-SQEIA 70
Query: 195 RKAFESCGEIDNVRLIR 211
KA + E R I
Sbjct: 71 EKALKKHKERIGHRYIE 87
Score = 36.0 bits (82), Expect = 8e-04
Identities = 12/47 (25%), Positives = 23/47 (48%)
Query: 84 CIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKA 130
+ + + R+ A+V+F + E EKAL+ + I I + K+
Sbjct: 45 GMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKS 91
>d1fjca_ d.58.7.1 (A:) Nucleolin {Golden hamster (Mesocricetus
auratus) [TaxId: 10036]}
Length = 96
Score = 43.1 bits (101), Expect = 2e-06
Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 5/65 (7%)
Query: 128 DKALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 187
D + + ++ N+ F E+EL++ FE EI V KG Y+ F
Sbjct: 6 DPCTSKKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEF 60
Query: 188 KAEEE 192
K+E +
Sbjct: 61 KSEAD 65
Score = 33.5 bits (76), Expect = 0.004
Identities = 12/51 (23%), Positives = 20/51 (39%), Gaps = 1/51 (1%)
Query: 81 RKACIKMNKVHEKRTNMNAYVRFKNLESVEKALE-MNGHVIDEHTIRVDKA 130
A + ++ AY+ FK+ EK LE G ID ++ +
Sbjct: 38 EDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYT 88
>d2cq0a1 d.58.7.1 (A:231-320) Eukaryotic translation initiation
factor 3 subunit 4 {Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 42.7 bits (100), Expect = 2e-06
Identities = 15/58 (25%), Positives = 31/58 (53%)
Query: 135 KSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEE 192
++ +I + N+ + E +L++ F G I + L +D+ T KGF +++F E+
Sbjct: 5 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRRED 62
Score = 33.9 bits (77), Expect = 0.003
Identities = 8/36 (22%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 96 NMNAYVRFKNLESVEKALE-MNGHVIDEHTIRVDKA 130
A++ F E +A+ ++G D + V+ A
Sbjct: 50 KGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWA 85
>d2disa1 d.58.7.1 (A:8-103) Hypothetical protein FLJ20273 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 96
Score = 43.1 bits (101), Expect = 2e-06
Identities = 11/54 (20%), Positives = 21/54 (38%), Gaps = 2/54 (3%)
Query: 141 IFIGNIPFEAEEEELRKAFESCGEIDN--VRLIRDQHTNIGKGFGYVNFKAEEE 192
+FIG IP + EE+ + E + +GF +V +++
Sbjct: 4 LFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRA 57
Score = 29.7 bits (66), Expect = 0.096
Identities = 8/35 (22%), Positives = 14/35 (40%), Gaps = 3/35 (8%)
Query: 99 AYVRFKNLESVEKALE---MNGHVIDEHTIRVDKA 130
A+V +++ + A + H I VD A
Sbjct: 48 AFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWA 82
Score = 28.1 bits (62), Expect = 0.30
Identities = 7/47 (14%), Positives = 16/47 (34%), Gaps = 2/47 (4%)
Query: 183 GYVNFKAEEEELRKAFESCGEIDN--VRLIRDQHTNIGKGFGYVNFK 227
G + + EE+ + E + +GF +V ++
Sbjct: 7 GGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYE 53
>d1x5sa1 d.58.7.1 (A:8-97) Cold-inducible RNA-binding protein {Human
(Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 42.8 bits (100), Expect = 2e-06
Identities = 17/56 (30%), Positives = 33/56 (58%)
Query: 136 SNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEE 191
S+ +F+G + F+ E+ L + F G+I V +++D+ T +GFG+V F+ +
Sbjct: 3 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENID 58
Score = 36.3 bits (83), Expect = 5e-04
Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 84 CIKMNKVHEKRTNMNAYVRFKNLESVEKALE-MNGHVIDEHTIRVDKALTTTKSNS 138
+ + +R+ +V F+N++ + A+ MNG +D IRVD+A ++ + S
Sbjct: 35 VVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAGKSSDNRS 90
Score = 26.2 bits (57), Expect = 1.5
Identities = 15/45 (33%), Positives = 27/45 (60%)
Query: 183 GYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK 227
G ++F E+ L + F G+I V +++D+ T +GFG+V F+
Sbjct: 11 GGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFE 55
>d1fxla1 d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 82
Score = 42.4 bits (99), Expect = 2e-06
Identities = 17/56 (30%), Positives = 33/56 (58%)
Query: 137 NSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEE 192
+ ++ + +P +EE R F S GEI++ +L+RD+ T G+G+VN+ ++
Sbjct: 1 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKD 56
Score = 36.6 bits (84), Expect = 2e-04
Identities = 11/52 (21%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 80 PRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALE-MNGHVIDEHTIRVDKA 130
++C + ++ +V + + + EKA+ +NG + TI+V A
Sbjct: 28 EIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 79
>d2cpya1 d.58.7.1 (A:536-638) RNA-binding protein 12 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 103
Score = 42.9 bits (100), Expect = 2e-06
Identities = 14/57 (24%), Positives = 23/57 (40%)
Query: 136 SNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEE 192
S I NIPF + ++ + E +N + + G G V FK E++
Sbjct: 6 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDD 62
Score = 34.8 bits (79), Expect = 0.002
Identities = 7/47 (14%), Positives = 18/47 (38%)
Query: 84 CIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKA 130
+ + + + A V+FKN + K+ ++ ++ V
Sbjct: 38 AVHVLVDNNGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFVHVV 84
>d1wwha1 d.58.7.1 (A:169-249) Nucleoporin 35 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 81
Score = 41.8 bits (98), Expect = 3e-06
Identities = 10/74 (13%), Positives = 23/74 (31%), Gaps = 8/74 (10%)
Query: 137 NSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRK 196
+ + + P + L F G I + + ++ + + + RK
Sbjct: 3 DDTWVTVFGFPQASASYILL-QFAQYGNILKHVMSNT------GNWMHIRY-QSKLQARK 54
Query: 197 AFESCGEIDNVRLI 210
A G I ++
Sbjct: 55 ALSKDGRIFGESIM 68
Score = 38.0 bits (88), Expect = 8e-05
Identities = 8/42 (19%), Positives = 17/42 (40%)
Query: 84 CIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTI 125
+ K T ++R+++ KAL +G + E +
Sbjct: 27 YGNILKHVMSNTGNWMHIRYQSKLQARKALSKDGRIFGESIM 68
>d2cpea1 d.58.7.1 (A:353-453) RNA-binding protein EWS {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 41.7 bits (97), Expect = 6e-06
Identities = 11/66 (16%), Positives = 27/66 (40%), Gaps = 8/66 (12%)
Query: 135 KSNSHSIFIGNIPFEAEEEELRKAFESCGEI--------DNVRLIRDQHTNIGKGFGYVN 186
S++ +I++ + ++L F+ CG + + + D+ T KG V+
Sbjct: 5 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVS 64
Query: 187 FKAEEE 192
++
Sbjct: 65 YEDPPT 70
Score = 38.6 bits (89), Expect = 7e-05
Identities = 16/83 (19%), Positives = 32/83 (38%), Gaps = 10/83 (12%)
Query: 57 MFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALE-M 115
FK G V+ + P+ I L ++ + +A V +++ + + A+E
Sbjct: 28 FFKQCGVVKMNKRTGQPMIHIYLDKETG---------KPKGDATVSYEDPPTAKAAVEWF 78
Query: 116 NGHVIDEHTIRVDKALTTTKSNS 138
+G ++V A NS
Sbjct: 79 DGKDFQGSKLKVSLARKKPPMNS 101
Score = 25.5 bits (55), Expect = 3.2
Identities = 6/37 (16%), Positives = 13/37 (35%)
Query: 183 GYVNFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGK 219
+N ++L F+ CG + + +I
Sbjct: 14 QGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYL 50
>d1wi8a_ d.58.7.1 (A:) Eukaryotic translation initiation factor 4B
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 41.6 bits (97), Expect = 6e-06
Identities = 13/55 (23%), Positives = 25/55 (45%)
Query: 138 SHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEE 192
++ F+GN+P++ EE +++ F + KGFGY F+ +
Sbjct: 15 PYTAFLGNLPYDVTEESIKEFFRGLNISAVRLPREPSNPERLKGFGYAEFEDLDS 69
Score = 36.2 bits (83), Expect = 5e-04
Identities = 13/47 (27%), Positives = 22/47 (46%)
Query: 84 CIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKA 130
+ + +R Y F++L+S+ AL +N + IRVD A
Sbjct: 45 RLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNKRIRVDVA 91
>d1rk8a_ d.58.7.1 (A:) RNA-binding protein 8 {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 88
Score = 40.9 bits (95), Expect = 1e-05
Identities = 17/55 (30%), Positives = 32/55 (58%)
Query: 138 SHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEE 192
+F+ +I EA+E+E+++ F GEI N+ L D+ T KG+ V ++ ++
Sbjct: 7 GWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQ 61
Score = 35.9 bits (82), Expect = 6e-04
Identities = 12/54 (22%), Positives = 18/54 (33%), Gaps = 1/54 (1%)
Query: 80 PRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALE-MNGHVIDEHTIRVDKALT 132
K + A V ++ + A E +NG I TI+VD
Sbjct: 33 EIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFV 86
>d1x4ha1 d.58.7.1 (A:8-105) RNA-binding protein 28 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 98
Score = 40.6 bits (94), Expect = 1e-05
Identities = 17/62 (27%), Positives = 32/62 (51%)
Query: 131 LTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAE 190
L + + ++FI N+ F++EEE L + + G++ VR++ T KG + F +
Sbjct: 1 LPSDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQ 60
Query: 191 EE 192
E
Sbjct: 61 EA 62
Score = 32.5 bits (73), Expect = 0.010
Identities = 10/54 (18%), Positives = 20/54 (37%), Gaps = 7/54 (12%)
Query: 84 CIKMNKVHEKRTNMNAYVRFKNLESVEKALE-------MNGHVIDEHTIRVDKA 130
+ + + A+ +F E+ +K L G +D ++VD A
Sbjct: 38 VRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQLKVDLA 91
>d2cq3a1 d.58.7.1 (A:110-202) RNA-binding protein 9 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 93
Score = 40.4 bits (94), Expect = 2e-05
Identities = 19/59 (32%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 134 TKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEE 192
+KS + + NIPF + +LR+ F G+I +V +I ++ + KGFG+V F+ +
Sbjct: 7 SKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGS--KGFGFVTFENSAD 63
Score = 34.7 bits (79), Expect = 0.001
Identities = 12/55 (21%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Query: 84 CIKMNKVHEKRTNMNAYVRFKNLESVEKALE-MNGHVIDEHTIRVDKALTTTKSN 137
+E+ + +V F+N ++A E ++G V++ I V+ A +N
Sbjct: 39 LDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTN 93
>d2ghpa3 d.58.7.1 (A:206-291) U4/U6 snRNA-associated-splicing factor
PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 86
Score = 39.3 bits (91), Expect = 3e-05
Identities = 14/47 (29%), Positives = 23/47 (48%)
Query: 84 CIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKA 130
I + N A++ F+N +S E+AL+MN ++ I V A
Sbjct: 36 NIPAGQKEHSFNNCCAFMVFENKDSAERALQMNRSLLGNREISVSLA 82
Score = 29.7 bits (66), Expect = 0.069
Identities = 15/75 (20%), Positives = 28/75 (37%), Gaps = 1/75 (1%)
Query: 138 SHSIFIGNIPFEA-EEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRK 196
I I N+ E +E LR++FE G I+ + + Q + ++ +
Sbjct: 4 GREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAER 63
Query: 197 AFESCGEIDNVRLIR 211
A + + R I
Sbjct: 64 ALQMNRSLLGNREIS 78
>d2cqha1 d.58.7.1 (A:2-81) IGF-II mRNA-binding protein 2 isoform A
{Human (Homo sapiens) [TaxId: 9606]}
Length = 80
Score = 38.9 bits (90), Expect = 3e-05
Identities = 8/54 (14%), Positives = 21/54 (38%), Gaps = 6/54 (11%)
Query: 139 HSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEE 192
+ ++IGN+ ++LR+ F + G+ +V++ +
Sbjct: 2 NKLYIGNLSPAVTADDLRQLFGDRKL------PLAGQVLLKSGYAFVDYPDQNW 49
>d2cqia1 d.58.7.1 (A:1-90) Nucleolysin TIAR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 90
Score = 38.9 bits (90), Expect = 4e-05
Identities = 10/57 (17%), Positives = 24/57 (42%), Gaps = 2/57 (3%)
Query: 136 SNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEE 192
++++GN+ + E + + F G + ++I + +N F V F +
Sbjct: 6 GQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCF--VEFYEHRD 60
Score = 34.2 bits (78), Expect = 0.002
Identities = 10/45 (22%), Positives = 15/45 (33%), Gaps = 1/45 (2%)
Query: 87 MNKVHEKRTNMNAYVRFKNLESVEKALE-MNGHVIDEHTIRVDKA 130
+ +V F AL MNG I ++V+ A
Sbjct: 39 KMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWA 83
>d2cpja1 d.58.7.1 (A:65-150) Non-POU domain-containing
octamer-binding protein, NonO {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 86
Score = 38.8 bits (90), Expect = 5e-05
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 6/59 (10%)
Query: 134 TKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEE 192
T + +F+GN+P + EEE+RK FE G+ V + +D+ FG++ +
Sbjct: 4 TFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKG------FGFIRLETRTL 56
Score = 38.0 bits (88), Expect = 9e-05
Identities = 8/48 (16%), Positives = 17/48 (35%), Gaps = 1/48 (2%)
Query: 84 CIKMNKVHEKRTNMNAYVRFKNLESVEKALE-MNGHVIDEHTIRVDKA 130
K +V + ++R + E A ++ + +RV A
Sbjct: 32 YGKAGEVFIHKDKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFA 79
>d2ghpa1 d.58.7.1 (A:116-196) U4/U6 snRNA-associated-splicing factor
PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 81
Score = 38.6 bits (89), Expect = 5e-05
Identities = 10/70 (14%), Positives = 27/70 (38%), Gaps = 1/70 (1%)
Query: 141 IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFES 200
+++ N P + +R + + + N + F Y++ ++E+ +
Sbjct: 4 LWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKL 63
Query: 201 CG-EIDNVRL 209
G +I+ L
Sbjct: 64 NGLKIEGYTL 73
Score = 30.1 bits (67), Expect = 0.045
Identities = 9/52 (17%), Positives = 21/52 (40%), Gaps = 1/52 (1%)
Query: 80 PRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALE-MNGHVIDEHTIRVDKA 130
I++ + + AY+ + E +E +NG I+ +T+ +
Sbjct: 27 VVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVS 78
>d1weza_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H'
{Human (Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 39.0 bits (90), Expect = 6e-05
Identities = 11/77 (14%), Positives = 21/77 (27%), Gaps = 3/77 (3%)
Query: 135 KSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEEL 194
+ H + + +P+ A E ++ F + G V F E+
Sbjct: 12 STTGHCVHMRGLPYRATENDIYNFFSPLNPMRVHIE--IGPDGRVTGEADVEFA-THEDA 68
Query: 195 RKAFESCGEIDNVRLIR 211
A R +
Sbjct: 69 VAAMAKDKANMQHRYVE 85
Score = 38.2 bits (88), Expect = 1e-04
Identities = 9/55 (16%), Positives = 17/55 (30%)
Query: 84 CIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKALTTTKSNS 138
+ + + R A V F E A+ + + + + T S S
Sbjct: 43 RVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELFLNSTAGTSGS 97
>d2ghpa2 d.58.7.1 (A:41-115) U4/U6 snRNA-associated-splicing factor
PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 75
Score = 37.9 bits (87), Expect = 7e-05
Identities = 12/70 (17%), Positives = 28/70 (40%), Gaps = 2/70 (2%)
Query: 140 SIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFE 199
++ + N+P + ++ K F+ CG I +V + N F + F + L +
Sbjct: 2 TVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKN--FRFARIEFARYDGALAAITK 59
Query: 200 SCGEIDNVRL 209
+ + +
Sbjct: 60 THKVVGQNEI 69
Score = 27.9 bits (61), Expect = 0.27
Identities = 7/40 (17%), Positives = 14/40 (35%)
Query: 91 HEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKA 130
K+ A + F + A+ V+ ++ I V
Sbjct: 35 SLKKNFRFARIEFARYDGALAAITKTHKVVGQNEIIVSHL 74
>d2adba1 d.58.7.1 (A:177-284) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 108
Score = 38.5 bits (89), Expect = 1e-04
Identities = 6/57 (10%), Positives = 17/57 (29%), Gaps = 4/57 (7%)
Query: 136 SNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEE 192
S I + N+ + + L + F G + + + + + +
Sbjct: 5 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNN----QFQALLQYADPVS 57
>d1u6fa1 d.58.7.1 (A:1-139) RNA-binding protein UBP1 {Trypanosoma
cruzi [TaxId: 5693]}
Length = 139
Score = 38.7 bits (89), Expect = 1e-04
Identities = 10/63 (15%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Query: 84 CIKMNKVHEKRTNMNAYVRFKNLESVEKALE-MNGHVIDEHTIRVDKALTTTKSNSHSIF 142
+ +++ +V+F++ S ++A+ +NG I ++V A + + +
Sbjct: 72 VKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALAASGHQRPGIAGA 131
Query: 143 IGN 145
+G+
Sbjct: 132 VGD 134
Score = 34.1 bits (77), Expect = 0.005
Identities = 16/55 (29%), Positives = 33/55 (60%)
Query: 138 SHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEE 192
++ + IP +E +LR+ FE G I++V+++ D+ T +G+G+V F++
Sbjct: 42 LRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSS 96
>d1x4ea1 d.58.7.1 (A:8-79) RNA-binding motif,
single-stranded-interacting protein 2, RBMS2 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 72
Score = 37.1 bits (85), Expect = 1e-04
Identities = 14/52 (26%), Positives = 29/52 (55%)
Query: 141 IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEE 192
++I + +++L K + G+I + + I D+ TN KG+G+V+F +
Sbjct: 1 LYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSA 52
Score = 29.0 bits (64), Expect = 0.12
Identities = 4/44 (9%), Positives = 14/44 (31%), Gaps = 1/44 (2%)
Query: 84 CIKMNKVHEKRTNMNAYVRFKNLESVEKALE-MNGHVIDEHTIR 126
+ + +V F + + +KA+ + + +
Sbjct: 28 TKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAK 71
>d1p1ta_ d.58.7.1 (A:) Cleavage stimulation factor, 64 kda subunit
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 37.8 bits (87), Expect = 1e-04
Identities = 21/56 (37%), Positives = 36/56 (64%)
Query: 137 NSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEE 192
+ S+F+GNIP+EA EE+L+ F G + + RL+ D+ T KG+G+ ++ +E
Sbjct: 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQET 62
Score = 34.7 bits (79), Expect = 0.002
Identities = 8/48 (16%), Positives = 18/48 (37%), Gaps = 1/48 (2%)
Query: 84 CIKMNKVHEKRTNMNAYVRFKNLESVEKALE-MNGHVIDEHTIRVDKA 130
+ + + +++ E+ A+ +NG +RVD A
Sbjct: 38 FRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNA 85
>d2cpza1 d.58.7.1 (A:383-484) CUG triplet repeat RNA-binding protein
1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 37.0 bits (85), Expect = 3e-04
Identities = 14/55 (25%), Positives = 31/55 (56%)
Query: 138 SHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEE 192
++FI ++P E +++L + F G + + ++ D+ TN+ K FG+V++
Sbjct: 18 GANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVS 72
Score = 35.8 bits (82), Expect = 6e-04
Identities = 9/48 (18%), Positives = 17/48 (35%), Gaps = 1/48 (2%)
Query: 84 CIKMNKVHEKRTNMNAYVRFKNLESVEKALE-MNGHVIDEHTIRVDKA 130
+ +V + N S + A++ MNG I ++V
Sbjct: 48 AKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLK 95
>d2cpxa1 d.58.7.1 (A:291-392) RNA-binding protein 41, RBM41 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 36.7 bits (84), Expect = 3e-04
Identities = 9/54 (16%), Positives = 20/54 (37%)
Query: 138 SHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEE 191
+ +++ N+ E +L F E + T +G ++ F +E
Sbjct: 18 NKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKE 71
Score = 28.2 bits (62), Expect = 0.34
Identities = 9/48 (18%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
Query: 84 CIKMNKVHEKRTNMNAYVRFKNLESVEKALE-MNGHVIDEHTIRVDKA 130
++ R A++ F N E +AL +NG+ + + ++
Sbjct: 48 PPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFG 95
>d1wela1 d.58.7.1 (A:412-523) RNA-binding protein 12 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 112
Score = 36.8 bits (84), Expect = 4e-04
Identities = 7/40 (17%), Positives = 14/40 (35%)
Query: 91 HEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKA 130
+ +V F+N + AL + + I+V
Sbjct: 55 PNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPI 94
Score = 35.2 bits (80), Expect = 0.002
Identities = 15/77 (19%), Positives = 31/77 (40%), Gaps = 1/77 (1%)
Query: 135 KSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEEL 194
+++ +PFEAE + + F+ +++ I G G+V F+ E +
Sbjct: 15 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFR-NEADY 73
Query: 195 RKAFESCGEIDNVRLIR 211
+ A + R I+
Sbjct: 74 KAALCRHKQYMGNRFIQ 90
>d1jmta_ d.58.7.3 (A:) U2AF35
(35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 36.6 bits (84), Expect = 4e-04
Identities = 12/56 (21%), Positives = 23/56 (41%), Gaps = 1/56 (1%)
Query: 135 KSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAE 190
+S + + E EE + E GE++ + + + + G YV F+ E
Sbjct: 24 RSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDN-LGDHLVGNVYVKFRRE 78
Score = 31.9 bits (72), Expect = 0.019
Identities = 9/47 (19%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
Query: 190 EEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKVSFTTLSSI 236
EE + E GE++ + + + + G YV F+ ++
Sbjct: 40 FEEVFTEMEEKYGEVEEMNVCDN-LGDHLVGNVYVKFRREEDAEKAV 85
Score = 30.8 bits (69), Expect = 0.050
Identities = 18/76 (23%), Positives = 26/76 (34%), Gaps = 19/76 (25%)
Query: 54 VTSMFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKAL 113
T M + YGEVE + H N YV+F+ E EKA+
Sbjct: 44 FTEMEEKYGEVEEMN---------------VCDNLGDHLV---GNVYVKFRREEDAEKAV 85
Query: 114 E-MNGHVIDEHTIRVD 128
+N + I +
Sbjct: 86 IDLNNRWFNGQPIHAE 101
>d2cpia1 d.58.7.1 (A:101-189) E3 ubiquitin protein ligase CNOT4
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 89
Score = 36.0 bits (82), Expect = 5e-04
Identities = 8/48 (16%), Positives = 16/48 (33%), Gaps = 3/48 (6%)
Query: 141 IFIGNIPFEAEEEELRKAFE---SCGEIDNVRLIRDQHTNIGKGFGYV 185
+F+ + + E+ K E G+I V + +G
Sbjct: 11 VFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSAS 58
Score = 24.0 bits (51), Expect = 8.2
Identities = 9/30 (30%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 99 AYVRFKNLESVEKALE-MNGHVIDEHTIRV 127
AYV + E +A++ +N V+D T++
Sbjct: 59 AYVTYIRSEDALRAIQCVNNVVVDGRTLKA 88
>d1nu4a_ d.58.7.1 (A:) Splicesomal U1A protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 91
Score = 35.4 bits (81), Expect = 7e-04
Identities = 12/56 (21%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 138 SHSIFIGNIPFEAEEEELRKAFES-CGEIDNVRLIRDQHTNIGKGFGYVNFKAEEE 192
+H+I+I N+ + +++EL+K+ + + I + +G +V FK
Sbjct: 3 NHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSS 58
Score = 32.7 bits (74), Expect = 0.008
Identities = 13/55 (23%), Positives = 22/55 (40%), Gaps = 3/55 (5%)
Query: 84 CIKMNKVHEKRTNMNAYVRFKNLESVEKALE-MNGHVIDEHTIRVDKALTTTKSN 137
+ + + A+V FK + S AL M G + +R+ A T S+
Sbjct: 34 ILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYA--KTDSD 86
>d2cq2a1 d.58.7.1 (A:25-125) Alkylation repair AlkB homolog 8,
ALKBH8 {Human (Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 35.5 bits (81), Expect = 9e-04
Identities = 13/90 (14%), Positives = 33/90 (36%), Gaps = 10/90 (11%)
Query: 136 SNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELR 195
+ S + G + +L E CG +D + + ++ + + + EE +
Sbjct: 18 TQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNKP------YSFARY-RTTEESK 70
Query: 196 KAFESCGEIDNVRLIRDQHTNIGKGFGYVN 225
+A+ ++ ++ D I +V
Sbjct: 71 RAYV---TLNGKEVVDDLGQKITLYLNFVE 97
Score = 27.8 bits (61), Expect = 0.48
Identities = 7/46 (15%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Query: 84 CIKMNKVHEKRTNMNAYVRFKNLESVEKALE-MNGHVI-DEHTIRV 127
C ++ + ++ R++ E ++A +NG + D+ ++
Sbjct: 44 CGLVDALLMPPNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKI 89
>d1whya_ d.58.7.1 (A:) Putative RNA-binding protein 15B, Rbm15b
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 97
Score = 35.0 bits (80), Expect = 0.001
Identities = 5/39 (12%), Positives = 15/39 (38%)
Query: 138 SHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHT 176
+ +++G + L + F+ G I + ++
Sbjct: 17 TTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKGDSF 55
>d1weya_ d.58.7.1 (A:) Calcipressin-1 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 104
Score = 35.2 bits (80), Expect = 0.001
Identities = 5/62 (8%), Positives = 13/62 (20%), Gaps = 11/62 (17%)
Query: 136 SNSHSIFIGNIPFE-----AEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAE 190
S S + + + F + + + + +NF
Sbjct: 3 SGSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKS------FKRVRINFSNP 56
Query: 191 EE 192
Sbjct: 57 LS 58
Score = 27.4 bits (60), Expect = 0.64
Identities = 8/42 (19%), Positives = 15/42 (35%), Gaps = 1/42 (2%)
Query: 99 AYVRFKNLESVEKALE-MNGHVIDEHTIRVDKALTTTKSNSH 139
+ F N S A ++ +++ A T +SH
Sbjct: 49 VRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQTLHIGSSH 90
>d1zh5a2 d.58.7.1 (A:105-189) Lupus LA protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 85
Score = 34.3 bits (78), Expect = 0.002
Identities = 11/47 (23%), Positives = 21/47 (44%)
Query: 84 CIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKA 130
I+M + K + +V F ++ES +K +E G E + +
Sbjct: 35 NIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFK 81
Score = 33.9 bits (77), Expect = 0.003
Identities = 13/56 (23%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 137 NSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEE 192
+ S++I P +A +++++ E G++ N++ +R KG +V F + E
Sbjct: 5 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQ-MRRTLHKAFKGSIFVVFDSIES 59
>d2dita1 d.58.7.1 (A:8-106) HIV Tat-specific factor 1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 99
Score = 34.5 bits (79), Expect = 0.002
Identities = 9/52 (17%), Positives = 20/52 (38%), Gaps = 1/52 (1%)
Query: 85 IKMNKVHEKRTNMNAYVRFKNLESVEKAL-EMNGHVIDEHTIRVDKALTTTK 135
I+ + ++ + A V F++ E + + ++G I TT
Sbjct: 46 IRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFGGRQITAQAWDGTTD 97
Score = 33.7 bits (77), Expect = 0.003
Identities = 11/45 (24%), Positives = 16/45 (35%), Gaps = 4/45 (8%)
Query: 148 FEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEE 192
E+LR G+I + L G V+F+ EE
Sbjct: 29 LNEIREDLRVECSKFGQIRKLLLFDRHP----DGVASVSFRDPEE 69
Score = 30.7 bits (69), Expect = 0.050
Identities = 9/41 (21%), Positives = 14/41 (34%), Gaps = 4/41 (9%)
Query: 187 FKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFK 227
E+LR G+I + L G V+F+
Sbjct: 29 LNEIREDLRVECSKFGQIRKLLLFDRHP----DGVASVSFR 65
>d2cpda1 d.58.7.1 (A:223-308) APOBEC1 stimulating protein {Human
(Homo sapiens) [TaxId: 9606]}
Length = 86
Score = 34.2 bits (78), Expect = 0.002
Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
Query: 81 RKACIKMNKVHEKRTNMNAYVRFKNLESVEKALE-MNGHVIDEHTIRVDKALTTTKSN 137
+ +V K+ A+V F N E +A++ +NG V+D I V A K +
Sbjct: 31 NIKPGAVERV--KKIRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKPVDKDS 86
Score = 33.8 bits (77), Expect = 0.003
Identities = 11/59 (18%), Positives = 23/59 (38%), Gaps = 6/59 (10%)
Query: 134 TKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEE 192
T S+ +++ N+ EE + K F + R + + +V+F E+
Sbjct: 4 TMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVER------VKKIRDYAFVHFSNRED 56
>d2bz2a1 d.58.7.1 (A:35-113) Negative elongation factor E, NELF-E
{Human (Homo sapiens) [TaxId: 9606]}
Length = 79
Score = 33.8 bits (77), Expect = 0.002
Identities = 10/48 (20%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 84 CIKMNKVHEKRTNMNAYVRFKNLESVEKAL-EMNGHVIDEHTIRVDKA 130
+ + A+V ++ +ES ++A+ E+NG ++ ++V+ A
Sbjct: 27 FGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 74
Score = 29.6 bits (66), Expect = 0.063
Identities = 12/73 (16%), Positives = 30/73 (41%), Gaps = 9/73 (12%)
Query: 138 SHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKA 197
+++++ LR AF G I ++ + + +V ++ E +
Sbjct: 5 GNTLYVYGED--MTPTLLRGAFSPFGNIIDLSMDPPR------NCAFVTYEKMESADQAV 56
Query: 198 FESCG-EIDNVRL 209
E G ++++V+L
Sbjct: 57 AELNGTQVESVQL 69
Score = 24.2 bits (52), Expect = 6.6
Identities = 9/44 (20%), Positives = 15/44 (34%), Gaps = 7/44 (15%)
Query: 184 YV-NFKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNF 226
YV LR AF G I ++ + + +V +
Sbjct: 9 YVYGEDMTPTLLRGAFSPFGNIIDLSMDPPR------NCAFVTY 46
>d1fjeb1 d.58.7.1 (B:1-91) Nucleolin {Golden hamster (Mesocricetus
auratus) [TaxId: 10036]}
Length = 91
Score = 33.8 bits (76), Expect = 0.003
Identities = 14/77 (18%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Query: 133 TTKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEE 192
+ + ++FIGN+ EL+ A +++ ++ T + FGYV+F++ E+
Sbjct: 8 SESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDV-RTGTNRKFGYVDFESAED 66
Query: 193 ELRKAFESCGEIDNVRL 209
+ + ++ +
Sbjct: 67 LEKALELTGLKVFGNEI 83
Score = 33.8 bits (76), Expect = 0.003
Identities = 13/47 (27%), Positives = 24/47 (51%)
Query: 84 CIKMNKVHEKRTNMNAYVRFKNLESVEKALEMNGHVIDEHTIRVDKA 130
+ + V YV F++ E +EKALE+ G + + I+++K
Sbjct: 42 DLAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKP 88
>d1wg4a_ d.58.7.1 (A:) Splicing factor, arginine/serine-rich 9
(SFRS9) {Mouse (Mus musculus) [TaxId: 10090]}
Length = 98
Score = 33.6 bits (76), Expect = 0.004
Identities = 6/48 (12%), Positives = 13/48 (27%), Gaps = 1/48 (2%)
Query: 84 CIKMNKVHEKRTNMNAYVRFKNLESVEKALE-MNGHVIDEHTIRVDKA 130
+ + + V + E +E AL ++ H
Sbjct: 38 EAGDVCYADVQKDGMGMVEYLRKEDMEYALRKLDDTKFRSHEGETSYI 85
Score = 32.8 bits (74), Expect = 0.008
Identities = 8/62 (12%), Positives = 21/62 (33%), Gaps = 7/62 (11%)
Query: 134 TKSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEE 193
T+ + + + +P ++L+ G++ G G V + +E+
Sbjct: 11 TRRSDFRVLVSGLPPSGSWQDLKDHMREAGDV-------CYADVQKDGMGMVEYLRKEDM 63
Query: 194 LR 195
Sbjct: 64 EY 65
>d1o0pa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 33.4 bits (76), Expect = 0.005
Identities = 9/52 (17%), Positives = 21/52 (40%), Gaps = 2/52 (3%)
Query: 143 IGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHT--NIGKGFGYVNFKAEEE 192
+ + +E E++R G + ++ + R G G +V F + +
Sbjct: 19 LDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFD 70
Score = 28.4 bits (63), Expect = 0.32
Identities = 9/49 (18%), Positives = 20/49 (40%), Gaps = 2/49 (4%)
Query: 187 FKAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKVSFTTLSS 235
++ E++R G + ++ + R G G + V FT++
Sbjct: 24 YEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKI--FVEFTSVFD 70
>d1wexa_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein
L-like {Mouse (Mus musculus) [TaxId: 10090]}
Length = 104
Score = 33.2 bits (75), Expect = 0.005
Identities = 10/55 (18%), Positives = 20/55 (36%), Gaps = 6/55 (10%)
Query: 138 SHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEE 192
S + + + E +L +A E G I V ++ + V F+ +
Sbjct: 15 SPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKR------QALVEFENIDS 63
>d1owxa_ d.58.7.1 (A:) Lupus LA protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 113
Score = 32.9 bits (74), Expect = 0.010
Identities = 13/60 (21%), Positives = 23/60 (38%), Gaps = 6/60 (10%)
Query: 141 IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFES 200
F G++ + E+L F + GEI + G G + FK + +E +
Sbjct: 14 KFSGDLDDQTCREDLHILFSNHGEIKWI------DFVRGAKEGIILFKEKAKEALGKAKD 67
>d1x4da1 d.58.7.1 (A:8-96) Matrin 3 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 89
Score = 31.2 bits (70), Expect = 0.021
Identities = 8/76 (10%), Positives = 24/76 (31%), Gaps = 5/76 (6%)
Query: 137 NSHSIFIGNIPF-EAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELR 195
+ I + + +L + E G I N ++ + F + + +
Sbjct: 7 TRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKINE----AFIEMATTEDAQAAV 62
Query: 196 KAFESCGEIDNVRLIR 211
+ + + + +R
Sbjct: 63 DYYTTTPALVFGKPVR 78
>d1x5oa1 d.58.7.1 (A:8-108) RNA-binding motif,
single-stranded-interacting protein 1, RBMS1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 31.7 bits (71), Expect = 0.021
Identities = 12/59 (20%), Positives = 27/59 (45%)
Query: 135 KSNSHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEE 193
+ + +++I N+P +E+EL + G++ + R++RD E+ E
Sbjct: 15 EQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCE 73
>d2adca2 d.58.7.1 (A:444-531) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 30.9 bits (69), Expect = 0.029
Identities = 13/75 (17%), Positives = 28/75 (37%), Gaps = 5/75 (6%)
Query: 138 SHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKA 197
S ++ + NIP EE+L+ F S G + + + + EE ++
Sbjct: 10 SATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRK----MALIQMGSVEEAVQAL 65
Query: 198 FESCG-EIDNVRLIR 211
+ ++ +R
Sbjct: 66 IDLHNHDLGENHHLR 80
>d1wg1a_ d.58.7.1 (A:) Probable RNA-binding protein KIAA1579 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 30.5 bits (68), Expect = 0.048
Identities = 6/28 (21%), Positives = 13/28 (46%)
Query: 136 SNSHSIFIGNIPFEAEEEELRKAFESCG 163
S S I + N+P ++ +E+ +
Sbjct: 3 SGSSGILVKNLPQDSNCQEVHDLLKDYD 30
Score = 30.1 bits (67), Expect = 0.059
Identities = 9/53 (16%), Positives = 18/53 (33%), Gaps = 1/53 (1%)
Query: 87 MNKVHEKRTNMNAYVRFKNLESVEKALE-MNGHVIDEHTIRVDKALTTTKSNS 138
+ + R A+V N E + A++ + + + V T S
Sbjct: 31 LKYCYVDRNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTDALLCS 83
>d1wi6a1 d.58.7.1 (A:69-143) Ribonucleoprotein PTB-binding 1,
Raver-1 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 75
Score = 29.1 bits (64), Expect = 0.12
Identities = 9/71 (12%), Positives = 19/71 (26%), Gaps = 7/71 (9%)
Query: 141 IFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFES 200
I I +P + +E+ ++ + KG +V E+
Sbjct: 1 ILIRGLPGDVTNQEVHDLLSDYE-------LKYCFVDKYKGTAFVTLLNGEQAEAAINTF 53
Query: 201 CGEIDNVRLIR 211
R +
Sbjct: 54 HQSRLRERELS 64
>d1whxa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 111
Score = 29.5 bits (65), Expect = 0.13
Identities = 13/63 (20%), Positives = 18/63 (28%), Gaps = 7/63 (11%)
Query: 138 SHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKA 197
I N+P E+++ F G + V E E RKA
Sbjct: 10 KTVILAKNLPAGTLAAEIQETFSRFGSLGRVL----LPEGGITAIVEF---LEPLEARKA 62
Query: 198 FES 200
F
Sbjct: 63 FRH 65
>d1wv3a2 b.26.1.4 (A:79-186) Protein EssC {Staphylococcus aureus
[TaxId: 1280]}
Length = 108
Score = 28.5 bits (63), Expect = 0.26
Identities = 13/42 (30%), Positives = 26/42 (61%), Gaps = 5/42 (11%)
Query: 157 KAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAF 198
K F+S E VR++ D++T++ Y+N++ +E+ KA+
Sbjct: 38 KDFQSIQESQYVRIVHDKNTDV-----YINYELQEQLTNKAY 74
>d2adca1 d.58.7.1 (A:335-443) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 109
Score = 27.4 bits (60), Expect = 0.60
Identities = 9/36 (25%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 96 NMNAYVRFKNLESVEKALE-MNGHVIDEHTIRVDKA 130
NA V+ + + A+ +NGH + IR+ +
Sbjct: 40 KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLS 75
Score = 25.5 bits (55), Expect = 3.2
Identities = 7/41 (17%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 138 SHSIFIGNIPFEA-EEEELRKAFESCGEIDNVRLIRDQHTN 177
+ + + N+ E + L F G++ V+++ ++ N
Sbjct: 2 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKEN 42
>d2b0ga1 d.58.7.1 (A:1-83) Splicesomal U1A protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 83
Score = 26.7 bits (58), Expect = 0.86
Identities = 11/74 (14%), Positives = 25/74 (33%), Gaps = 4/74 (5%)
Query: 138 SHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKA 197
+ +F+ N+P E E L F + +R F + + ++A
Sbjct: 8 NQILFLTNLPEETNEMMLSMLFNQF---PGFKEVRLVPNRHDIAFVEFTTELQSNAAKEA 64
Query: 198 FESCGEIDNVRLIR 211
+ +I ++
Sbjct: 65 LQGF-KITPTHAMK 77
>d3begb1 d.58.7.1 (B:121-207) Splicing factor, arginine/serine-rich
1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 87
Score = 26.8 bits (58), Expect = 0.90
Identities = 5/40 (12%), Positives = 16/40 (40%)
Query: 139 HSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNI 178
+ + + +P ++L+ G++ + RD +
Sbjct: 1 NRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDGTGVV 40
Score = 26.0 bits (56), Expect = 1.6
Identities = 5/41 (12%), Positives = 11/41 (26%), Gaps = 1/41 (2%)
Query: 91 HEKRTNMNAYVRFKNLESVEKALE-MNGHVIDEHTIRVDKA 130
+ + V F E + A+ ++ H
Sbjct: 30 ADVYRDGTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 70
>d2cq1a1 d.58.7.1 (A:51-138) Polypyrimidine tract-binding protein 2,
PTBP2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 26.7 bits (58), Expect = 1.0
Identities = 10/74 (13%), Positives = 27/74 (36%), Gaps = 4/74 (5%)
Query: 138 SHSIFIGNIPFEAEEEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKA 197
S + I +P E E E+ G++ N+ +++ ++ F + + +
Sbjct: 8 SRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQA----FLELATEEAAITMVNY 63
Query: 198 FESCGEIDNVRLIR 211
+ + + I
Sbjct: 64 YSAVTPHLRNQPIY 77
Score = 24.0 bits (51), Expect = 8.0
Identities = 4/50 (8%), Positives = 14/50 (28%), Gaps = 3/50 (6%)
Query: 84 CIKMNKVHEKRTNMNAYVRFKNLESVEKALE---MNGHVIDEHTIRVDKA 130
K+ + + A++ E+ + + I + +
Sbjct: 32 FGKVTNILMLKGKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYS 81
>d1ufwa_ d.58.7.1 (A:) Synaptojanin 2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 95
Score = 24.8 bits (54), Expect = 5.0
Identities = 9/71 (12%), Positives = 18/71 (25%), Gaps = 25/71 (35%)
Query: 57 MFKPYGEVETVRFRSVPVADITLPRKACIKMNKVHEKRTNMNAYVRFKNLESVEKALEMN 116
YG + VR V F + S L+++
Sbjct: 44 TLGSYGTIVLVRI----NQG---------------------QMLVTFADSHSALSVLDVD 78
Query: 117 GHVIDEHTIRV 127
G + +++
Sbjct: 79 GMKVKGRAVKI 89
Score = 24.8 bits (54), Expect = 5.1
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 153 EELRKAFESCGEIDNVRLIRDQ 174
EL + S G I VR+ + Q
Sbjct: 39 TELMQTLGSYGTIVLVRINQGQ 60
Score = 24.8 bits (54), Expect = 5.1
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 192 EELRKAFESCGEIDNVRLIRDQ 213
EL + S G I VR+ + Q
Sbjct: 39 TELMQTLGSYGTIVLVRINQGQ 60
>d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 322
Score = 25.8 bits (56), Expect = 5.3
Identities = 10/54 (18%), Positives = 21/54 (38%)
Query: 113 LEMNGHVIDEHTIRVDKALTTTKSNSHSIFIGNIPFEAEEEELRKAFESCGEID 166
++IDE I V + ++ N + + N+ E E + + G +
Sbjct: 102 WSTYSNLIDEERIFVPEVQSSDHINDKFLTVANVTGEGSEGLIMQWLSCIGNKN 155
>d1fw4a_ a.39.1.5 (A:) Calmodulin {Cow (Bos taurus) [TaxId: 9913]}
Length = 65
Score = 23.4 bits (50), Expect = 8.1
Identities = 11/51 (21%), Positives = 22/51 (43%)
Query: 152 EEELRKAFESCGEIDNVRLIRDQHTNIGKGFGYVNFKAEEEELRKAFESCG 202
EEE+R+AF + N + + ++ G E +E+ + + G
Sbjct: 2 EEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDG 52
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.133 0.376
Gapped
Lambda K H
0.267 0.0463 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 857,874
Number of extensions: 38715
Number of successful extensions: 369
Number of sequences better than 10.0: 1
Number of HSP's gapped: 343
Number of HSP's successfully gapped: 211
Length of query: 239
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 156
Effective length of database: 1,268,006
Effective search space: 197808936
Effective search space used: 197808936
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.1 bits)