BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy14194
         (87 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2LGX|A Chain A, Nmr Structure For Kindle-2 N-Terminus
          Length = 112

 Score = 55.5 bits (132), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 46/88 (52%), Gaps = 5/88 (5%)

Query: 2   MADGVLVGDGTWMLKVYVTDLQIERSLRVKGDLHIGGVMLRLVEDLVTHMIPSSYSFGSA 61
           M DG    DGTW L V+VTD+  + +LRV G++HIGGVML+LVE L      S ++    
Sbjct: 15  MPDGC-YADGTWELSVHVTDVNRDVTLRVTGEVHIGGVMLKLVEKLDVKKDWSDHALWWE 73

Query: 62  RP----IATHLAPNSYSFALTRRSLLSP 85
           +     + TH   + Y      +   +P
Sbjct: 74  KKRTWLLKTHWTLDKYGIQADAKLQFTP 101


>pdb|2KMC|A Chain A, Solution Structure Of The N-Terminal Domain Of Kindlin-1
          Length = 102

 Score = 42.0 bits (97), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 31/93 (33%), Positives = 43/93 (46%), Gaps = 9/93 (9%)

Query: 1  MMADGVLVGDGTWMLKVYVT----DLQIERSLRVKGDLHIGGVMLRLVEDLVTHMIPSSY 56
          M++ G L    +W L V V     + Q E +LRV GDLHIGGVML+LVE +      S Y
Sbjct: 7  MLSSGDLTS-ASWELVVRVDHANGEQQTEITLRVSGDLHIGGVMLKLVEQMNIAQDWSDY 65

Query: 57 SFGSARP----IATHLAPNSYSFALTRRSLLSP 85
          +    +     + TH   +          L +P
Sbjct: 66 ALWWEQKRCWLLKTHWTLDKCGVQADANLLFTP 98


>pdb|1QSM|A Chain A, Histone Acetyltransferase Hpa2 From Saccharomyces
           Cerevisiae In Complex With Acetyl Coenzyme A
 pdb|1QSM|B Chain B, Histone Acetyltransferase Hpa2 From Saccharomyces
           Cerevisiae In Complex With Acetyl Coenzyme A
 pdb|1QSM|C Chain C, Histone Acetyltransferase Hpa2 From Saccharomyces
           Cerevisiae In Complex With Acetyl Coenzyme A
 pdb|1QSM|D Chain D, Histone Acetyltransferase Hpa2 From Saccharomyces
           Cerevisiae In Complex With Acetyl Coenzyme A
          Length = 152

 Score = 29.3 bits (64), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 6/48 (12%)

Query: 12  TWMLK--VYVTDLQIERSLRVKGDLHIGGVMLRLVEDLVTHM-IPSSY 56
           TW  K  +Y+ DL ++ + RVKG    GG +++ V D    +  PS Y
Sbjct: 77  TWDFKDKIYINDLYVDENSRVKG---AGGKLIQFVYDEADKLGTPSVY 121


>pdb|1QSO|A Chain A, Histone Acetyltransferase Hpa2 From Saccharomyces
           Cerevisiae
 pdb|1QSO|B Chain B, Histone Acetyltransferase Hpa2 From Saccharomyces
           Cerevisiae
 pdb|1QSO|C Chain C, Histone Acetyltransferase Hpa2 From Saccharomyces
           Cerevisiae
 pdb|1QSO|D Chain D, Histone Acetyltransferase Hpa2 From Saccharomyces
           Cerevisiae
          Length = 149

 Score = 29.3 bits (64), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 6/48 (12%)

Query: 12  TWMLK--VYVTDLQIERSLRVKGDLHIGGVMLRLVEDLVTHM-IPSSY 56
           TW  K  +Y+ DL ++ + RVKG    GG +++ V D    +  PS Y
Sbjct: 74  TWDFKDKIYINDLYVDENSRVKG---AGGKLIQFVYDEADKLGTPSVY 118


>pdb|3LMK|A Chain A, Ligand Binding Domain Of Metabotropoc Glutamate Receptor
           Mglur5 Complexed With Glutamate
 pdb|3LMK|B Chain B, Ligand Binding Domain Of Metabotropoc Glutamate Receptor
           Mglur5 Complexed With Glutamate
          Length = 492

 Score = 26.9 bits (58), Expect = 2.9,   Method: Composition-based stats.
 Identities = 16/39 (41%), Positives = 22/39 (56%)

Query: 45  EDLVTHMIPSSYSFGSARPIATHLAPNSYSFALTRRSLL 83
           E LV  +  SS SF S +PI   + P S S A+  ++LL
Sbjct: 111 EGLVRCVDGSSSSFRSKKPIVGVIGPGSSSVAIQVQNLL 149


>pdb|3P85|A Chain A, Crystal Structure Enoyl-Coa Hydratase From Mycobacterium
           Avium
          Length = 270

 Score = 25.8 bits (55), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 5/66 (7%)

Query: 12  TWMLKVYV---TDLQIERSLRVKGDLHIGGVMLRLVEDLVTHMIPSSYSFGSARPIATHL 68
           TW L V +     + + R + + GD       LR    LVT ++P     G+AR +A  +
Sbjct: 153 TWGLSVRLPQKVGIGLARRMSLTGDYLSAADALR--AGLVTEVVPHDQLLGAARAVAASI 210

Query: 69  APNSYS 74
             N+ +
Sbjct: 211 VGNNQN 216


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.137    0.404 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,613,860
Number of Sequences: 62578
Number of extensions: 86356
Number of successful extensions: 199
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 193
Number of HSP's gapped (non-prelim): 9
length of query: 87
length of database: 14,973,337
effective HSP length: 55
effective length of query: 32
effective length of database: 11,531,547
effective search space: 369009504
effective search space used: 369009504
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)