BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14194
(87 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9VZI3|UN112_DROME Unc-112-related protein OS=Drosophila melanogaster GN=Fit1 PE=1
SV=1
Length = 708
Score = 60.5 bits (145), Expect = 3e-09, Method: Composition-based stats.
Identities = 25/38 (65%), Positives = 33/38 (86%)
Query: 8 VGDGTWMLKVYVTDLQIERSLRVKGDLHIGGVMLRLVE 45
VG+ TW L++ +TDLQ+E++LRVKGD HIGGVML LV+
Sbjct: 4 VGENTWNLRILITDLQVEKTLRVKGDQHIGGVMLNLVD 41
>sp|Q8CIB5|FERM2_MOUSE Fermitin family homolog 2 OS=Mus musculus GN=Fermt2 PE=1 SV=1
Length = 680
Score = 57.4 bits (137), Expect = 2e-08, Method: Composition-based stats.
Identities = 28/46 (60%), Positives = 34/46 (73%), Gaps = 1/46 (2%)
Query: 2 MADGVLVGDGTWMLKVYVTDLQIERSLRVKGDLHIGGVMLRLVEDL 47
M DG DGTW L V+VTDL + +LRV G++HIGGVML+LVE L
Sbjct: 8 MPDGCY-ADGTWELSVHVTDLNRDVTLRVTGEVHIGGVMLKLVEKL 52
>sp|Q96AC1|FERM2_HUMAN Fermitin family homolog 2 OS=Homo sapiens GN=FERMT2 PE=1 SV=1
Length = 680
Score = 57.4 bits (137), Expect = 2e-08, Method: Composition-based stats.
Identities = 28/46 (60%), Positives = 34/46 (73%), Gaps = 1/46 (2%)
Query: 2 MADGVLVGDGTWMLKVYVTDLQIERSLRVKGDLHIGGVMLRLVEDL 47
M DG DGTW L V+VTDL + +LRV G++HIGGVML+LVE L
Sbjct: 8 MPDGCY-ADGTWELSVHVTDLNRDVTLRVTGEVHIGGVMLKLVEKL 52
>sp|Q18685|UN112_CAEEL Protein unc-112 OS=Caenorhabditis elegans GN=unc-112 PE=1 SV=1
Length = 720
Score = 50.4 bits (119), Expect = 4e-06, Method: Composition-based stats.
Identities = 21/45 (46%), Positives = 32/45 (71%)
Query: 2 MADGVLVGDGTWMLKVYVTDLQIERSLRVKGDLHIGGVMLRLVED 46
+ +G + DG W L + VTDL I+RS+ V G+L++GG+ML LV +
Sbjct: 4 LVEGTSIIDGKWQLPILVTDLNIQRSISVLGNLNVGGLMLELVSE 48
>sp|P59113|FERM1_MOUSE Fermitin family homolog 1 OS=Mus musculus GN=Fermt1 PE=1 SV=4
Length = 677
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 25/51 (49%), Positives = 32/51 (62%), Gaps = 5/51 (9%)
Query: 1 MMADGVLVGDGTWMLKVYVT----DLQIERSLRVKGDLHIGGVMLRLVEDL 47
M++ G L +W L V V + Q E +LRV GDLHIGGVML+LVE +
Sbjct: 1 MLSSGDLT-SASWELVVRVDHANGEQQTEITLRVSGDLHIGGVMLKLVEQM 50
>sp|Q9BQL6|FERM1_HUMAN Fermitin family homolog 1 OS=Homo sapiens GN=FERMT1 PE=1 SV=1
Length = 677
Score = 39.7 bits (91), Expect = 0.006, Method: Composition-based stats.
Identities = 20/41 (48%), Positives = 27/41 (65%), Gaps = 4/41 (9%)
Query: 11 GTWMLKVYV----TDLQIERSLRVKGDLHIGGVMLRLVEDL 47
+W L V V + Q + +LRV GDLH+GGVML+LVE +
Sbjct: 10 ASWELVVRVDHPNEEQQKDVTLRVSGDLHVGGVMLKLVEQI 50
>sp|Q5R8M5|FERM1_PONAB Fermitin family homolog 1 OS=Pongo abelii GN=FERMT1 PE=2 SV=1
Length = 677
Score = 39.3 bits (90), Expect = 0.008, Method: Composition-based stats.
Identities = 20/41 (48%), Positives = 27/41 (65%), Gaps = 4/41 (9%)
Query: 11 GTWMLKVYV----TDLQIERSLRVKGDLHIGGVMLRLVEDL 47
+W L V V + Q + +LRV GDLH+GGVML+LVE +
Sbjct: 10 ASWELVVRVDHPNEEQQKDVTLRVSGDLHVGGVMLQLVEQI 50
>sp|Q8K1B8|URP2_MOUSE Fermitin family homolog 3 OS=Mus musculus GN=Fermt3 PE=1 SV=1
Length = 665
Score = 38.5 bits (88), Expect = 0.012, Method: Composition-based stats.
Identities = 18/41 (43%), Positives = 29/41 (70%), Gaps = 3/41 (7%)
Query: 10 DGTWMLKVYVTDLQIER---SLRVKGDLHIGGVMLRLVEDL 47
D +W L+V+V + E +LRV G+ HIGGV+L++VE++
Sbjct: 13 DSSWELRVFVGEEDPEAQSVTLRVTGESHIGGVLLKIVEEI 53
>sp|Q32LP0|URP2_BOVIN Fermitin family homolog 3 OS=Bos taurus GN=FERMT3 PE=2 SV=1
Length = 665
Score = 38.1 bits (87), Expect = 0.014, Method: Composition-based stats.
Identities = 17/41 (41%), Positives = 29/41 (70%), Gaps = 3/41 (7%)
Query: 10 DGTWMLKVYVTDLQIER---SLRVKGDLHIGGVMLRLVEDL 47
D +W L+V++ + E +LRV G+ HIGGV+L++VE++
Sbjct: 13 DSSWELRVFIGEEDPEAESLTLRVTGESHIGGVLLKIVEEI 53
>sp|Q86UX7|URP2_HUMAN Fermitin family homolog 3 OS=Homo sapiens GN=FERMT3 PE=1 SV=1
Length = 667
Score = 38.1 bits (87), Expect = 0.017, Method: Composition-based stats.
Identities = 18/41 (43%), Positives = 28/41 (68%), Gaps = 3/41 (7%)
Query: 10 DGTWMLKVYVTDLQIER---SLRVKGDLHIGGVMLRLVEDL 47
D +W L+V+V + E +LRV G+ HIGGV+L++VE +
Sbjct: 13 DSSWELRVFVGEEDPEAESVTLRVTGESHIGGVLLKIVEQI 53
>sp|Q9V6U8|UBA3_DROME NEDD8-activating enzyme E1 catalytic subunit OS=Drosophila
melanogaster GN=CG13343 PE=2 SV=1
Length = 450
Score = 31.6 bits (70), Expect = 1.7, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 25 ERSLRVKGDLHIGGVMLRLVEDLVTHMIPSSYS 57
ER+L + +I GV RLV+ +V H+IP+ S
Sbjct: 261 ERALERSNEFNITGVTYRLVQGVVKHIIPAVAS 293
>sp|B1WTW9|Y1085_CYAA5 UPF0284 protein cce_1085 OS=Cyanothece sp. (strain ATCC 51142)
GN=cce_1085 PE=3 SV=1
Length = 369
Score = 31.2 bits (69), Expect = 2.2, Method: Composition-based stats.
Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
Query: 2 MADGVLVGDGTWMLKVYVTDLQIERSLRVKGDLH--IGGVMLRLVEDLVTHMIPSSYSFG 59
+ GV++ GT ML VY I + + +G+L I G + EDL + + S G
Sbjct: 243 LKTGVMLAGGTQMLAVYALIKSIINTSKYQGNLDNIIVGTTRWVAEDLTGDTVTLAESIG 302
Query: 60 SARPIATHLAPNSYSF 75
+ AT L +S S+
Sbjct: 303 TVPLFATQLNFSSSSY 318
>sp|Q39565|DYHB_CHLRE Dynein beta chain, flagellar outer arm OS=Chlamydomonas reinhardtii
GN=ODA4 PE=3 SV=1
Length = 4568
Score = 30.8 bits (68), Expect = 2.8, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Query: 24 IERSLRVKGDLHIGGVMLRLVEDLVTHMIPSSY---SFGSARPIATHLA 69
+E L +KGDL + M RL++ L T +P S+ ++ S RP+ + L
Sbjct: 4355 LELDLGLKGDLTMTEPMERLLKALATDAVPGSWRNLAYPSLRPLGSWLG 4403
>sp|Q3EA54|CSPLL_ARATH CASP-like protein At4g11655 OS=Arabidopsis thaliana GN=At4g11655
PE=2 SV=1
Length = 208
Score = 28.9 bits (63), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 24/46 (52%)
Query: 31 KGDLHIGGVMLRLVEDLVTHMIPSSYSFGSARPIATHLAPNSYSFA 76
+ +H+ G++LR + ++ + S + RP HL NS SFA
Sbjct: 49 RASVHVIGLVLRFITMVLCFVSALSLAVNVQRPSKRHLTQNSSSFA 94
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.137 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,912,586
Number of Sequences: 539616
Number of extensions: 1144025
Number of successful extensions: 2487
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 2474
Number of HSP's gapped (non-prelim): 15
length of query: 87
length of database: 191,569,459
effective HSP length: 57
effective length of query: 30
effective length of database: 160,811,347
effective search space: 4824340410
effective search space used: 4824340410
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)