Query psy14194
Match_columns 87
No_of_seqs 68 out of 70
Neff 2.7
Searched_HMMs 46136
Date Fri Aug 16 21:51:12 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14194.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14194hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3727|consensus 99.5 8.2E-15 1.8E-19 125.2 3.2 42 7-49 3-44 (664)
2 TIGR02457 TreS_Cterm trehalose 59.1 5.1 0.00011 34.1 1.3 41 25-72 377-419 (528)
3 cd01799 Hoil1_N Ubiquitin-like 58.5 7.9 0.00017 24.5 1.8 35 15-49 1-38 (75)
4 smart00282 LamG Laminin G doma 53.4 20 0.00043 22.9 3.1 26 7-33 58-83 (135)
5 PLN02800 imidazoleglycerol-pho 49.3 9.7 0.00021 30.5 1.3 24 24-49 112-135 (261)
6 PRK14705 glycogen branching en 42.7 14 0.00031 34.8 1.5 42 25-72 329-377 (1224)
7 PF00788 RA: Ras association ( 42.0 25 0.00054 21.2 2.1 36 14-49 4-42 (93)
8 COG3281 Ble Uncharacterized pr 37.4 15 0.00033 31.5 0.8 42 26-72 283-324 (438)
9 TIGR02588 conserved hypothetic 34.5 79 0.0017 22.8 4.0 45 9-54 47-93 (122)
10 PF14492 EFG_II: Elongation Fa 34.4 26 0.00057 21.8 1.4 34 16-49 36-69 (75)
11 cd00110 LamG Laminin G domain; 33.3 83 0.0018 19.9 3.6 25 8-33 77-101 (151)
12 PF03173 CHB_HEX: Putative car 31.0 49 0.0011 24.2 2.5 12 24-35 67-79 (164)
13 PF00475 IGPD: Imidazoleglycer 30.3 21 0.00045 26.2 0.4 25 23-49 18-42 (145)
14 PTZ00044 ubiquitin; Provisiona 30.3 54 0.0012 19.5 2.2 34 16-49 2-36 (76)
15 PRK01406 gltX glutamyl-tRNA sy 28.9 21 0.00045 29.7 0.3 14 31-44 14-27 (476)
16 PRK12558 glutamyl-tRNA synthet 28.9 21 0.00045 29.9 0.3 14 31-44 12-25 (445)
17 PF00579 tRNA-synt_1b: tRNA sy 28.8 23 0.00049 26.6 0.4 12 29-40 13-24 (292)
18 KOG4279|consensus 28.5 13 0.00029 35.0 -1.0 38 38-82 218-255 (1226)
19 PRK13598 hisB imidazoleglycero 28.0 34 0.00074 26.2 1.3 24 24-49 50-73 (193)
20 PF13281 DUF4071: Domain of un 27.7 5.2 0.00011 32.9 -3.3 37 38-82 158-194 (374)
21 cd07914 IGPD Imidazoleglycerol 27.7 34 0.00073 26.1 1.2 24 24-49 46-69 (190)
22 PF02120 Flg_hook: Flagellar h 27.2 61 0.0013 19.6 2.1 25 9-33 9-36 (85)
23 cd00418 GlxRS_core catalytic c 27.1 23 0.00051 27.1 0.3 16 31-46 11-26 (230)
24 PF03633 Glyco_hydro_65C: Glyc 27.0 1E+02 0.0022 17.7 3.0 17 10-27 17-33 (54)
25 PRK05446 imidazole glycerol-ph 26.8 28 0.0006 28.2 0.6 24 24-49 213-236 (354)
26 KOG3073|consensus 26.5 31 0.00067 27.6 0.8 66 12-78 92-166 (236)
27 PRK00927 tryptophanyl-tRNA syn 26.3 17 0.00037 28.6 -0.6 20 29-48 9-31 (333)
28 smart00213 UBQ Ubiquitin homol 26.3 68 0.0015 17.7 2.0 34 16-49 2-35 (64)
29 CHL00094 dnaK heat shock prote 26.1 1.1E+02 0.0024 25.8 4.0 32 8-40 194-226 (621)
30 PF00749 tRNA-synt_1c: tRNA sy 26.1 26 0.00056 27.4 0.4 14 31-44 11-24 (314)
31 TIGR00464 gltX_bact glutamyl-t 25.6 26 0.00056 29.1 0.3 14 31-44 11-24 (470)
32 PF09783 Vac_ImportDeg: Vacuol 25.4 53 0.0011 24.5 1.9 52 9-61 16-71 (176)
33 PRK00290 dnaK molecular chaper 25.0 1.2E+02 0.0026 25.5 4.1 33 8-40 192-224 (627)
34 TIGR02350 prok_dnaK chaperone 24.1 1.2E+02 0.0027 25.1 3.9 33 8-40 190-222 (595)
35 cd01806 Nedd8 Nebb8-like ubiq 23.7 1E+02 0.0022 17.9 2.6 34 16-49 2-36 (76)
36 KOG0100|consensus 23.4 1E+02 0.0022 27.5 3.5 30 9-38 233-262 (663)
37 PTZ00126 tyrosyl-tRNA syntheta 23.2 23 0.0005 28.9 -0.4 19 30-48 75-96 (383)
38 PRK12410 glutamylglutaminyl-tR 23.1 31 0.00066 28.9 0.3 13 31-43 9-21 (433)
39 cd01812 BAG1_N Ubiquitin-like 23.0 1E+02 0.0022 17.8 2.5 34 16-49 2-35 (71)
40 PRK05710 glutamyl-Q tRNA(Asp) 22.5 32 0.0007 27.3 0.3 15 31-45 15-29 (299)
41 TIGR03838 queuosine_YadB gluta 22.4 33 0.00071 26.8 0.3 13 31-43 10-22 (272)
42 PRK00951 hisB imidazoleglycero 22.3 40 0.00087 25.8 0.7 24 24-49 50-73 (195)
43 PF00630 Filamin: Filamin/ABP2 22.0 1.8E+02 0.0038 17.7 3.5 29 9-38 68-97 (101)
44 PF09937 DUF2169: Uncharacteri 21.9 95 0.0021 24.2 2.8 24 11-36 77-100 (297)
45 TIGR01991 HscA Fe-S protein as 21.9 1.5E+02 0.0032 25.1 4.0 32 8-39 188-219 (599)
46 PRK14895 gltX glutamyl-tRNA sy 21.8 34 0.00074 29.4 0.3 15 31-45 14-28 (513)
47 cd01807 GDX_N ubiquitin-like d 21.4 1E+02 0.0023 18.5 2.3 34 16-49 2-36 (74)
48 PRK05183 hscA chaperone protei 20.4 1.7E+02 0.0036 24.9 4.1 31 8-39 208-239 (616)
49 PF11412 DsbC: Disulphide bond 20.4 1.6E+02 0.0036 18.6 3.2 32 10-41 8-39 (117)
50 PF15133 DUF4569: Domain of un 20.2 36 0.00077 28.0 0.1 8 31-38 130-137 (306)
No 1
>KOG3727|consensus
Probab=99.50 E-value=8.2e-15 Score=125.16 Aligned_cols=42 Identities=64% Similarity=1.036 Sum_probs=40.0
Q ss_pred eeccCeEEEEEEEeecCceeEEEEcCccccchhhhheeecccc
Q psy14194 7 LVGDGTWMLKVYVTDLQIERSLRVKGDLHIGGVMLRLVEDLVT 49 (87)
Q Consensus 7 ~~~dgSWeLsV~VtdL~~evtLRVtGDLHIGGVMLKLVE~l~i 49 (87)
+++||+|+|+|+||||++++||||.||+|||||||+||+ .++
T Consensus 3 ~~~~~~w~l~i~vtdl~~~~t~~v~g~~~igg~ml~lv~-~~~ 44 (664)
T KOG3727|consen 3 HVGDGTWNLRILVTDLNIEKTLRVLGDQHIGGVMLELVD-PDV 44 (664)
T ss_pred ceecCeeeeEEEEeeccceeeEEeeccceeeeeEEEecC-CCC
Confidence 589999999999999999999999999999999999999 566
No 2
>TIGR02457 TreS_Cterm trehalose synthase-fused probable maltokinase. Three pathways for the biosynthesis of trehalose, an osmoprotectant that in some species is also a precursor of certain cell wall glycolipids. Trehalose synthase, TreS, can interconvert maltose and trehalose, but while the equilibrium may favor trehalose, physiological concentrations of trehalose may be much greater than that of maltose and TreS may act largely in its degradation. This model describes a domain found only as a C-terminal fusion to TreS proteins. The most closely related proteins outside this family, Pep2 of Streptomyces coelicolor and Mak1 of Actinoplanes missouriensis, have known maltokinase activity. We suggest this domain acts as a maltokinase and helps drive conversion of trehalose to maltose.
Probab=59.13 E-value=5.1 Score=34.05 Aligned_cols=41 Identities=34% Similarity=0.590 Sum_probs=28.3
Q ss_pred eeEEEEcCccccchhhhheeecccceeecCCCcc--CCCCcceeecCCCc
Q psy14194 25 ERSLRVKGDLHIGGVMLRLVEDLVTHMIPSSYSF--GSARPIATHLAPNS 72 (87)
Q Consensus 25 evtLRVtGDLHIGGVMLKLVE~l~i~~~~~~~~f--~~~~~~~~~~~~~~ 72 (87)
..++|+-||+|+|-|+. +. -+... -.| .|+||++.--.+.|
T Consensus 377 ~~k~RiHGD~HLgqvL~--t~-~d~~I----iDFEGEP~Rpl~ERR~k~s 419 (528)
T TIGR02457 377 GLKIRIHGDFHLGQVLV--VQ-DDAVL----IDFEGEPARPLAERRAKRS 419 (528)
T ss_pred cceEeEecCcchhcEEE--eC-CCeEE----EcCCCCCCCChHHhccCCC
Confidence 36899999999999873 32 23321 345 69999987655543
No 3
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=58.48 E-value=7.9 Score=24.47 Aligned_cols=35 Identities=26% Similarity=0.274 Sum_probs=30.0
Q ss_pred EEEEEeecC---ceeEEEEcCccccchhhhheeecccc
Q psy14194 15 LKVYVTDLQ---IERSLRVKGDLHIGGVMLRLVEDLVT 49 (87)
Q Consensus 15 LsV~VtdL~---~evtLRVtGDLHIGGVMLKLVE~l~i 49 (87)
|+|+|+|-. ...++.|..+.-|+.|.-||-++.++
T Consensus 1 ~~~~~~~~~~~~~t~~l~v~~~~TV~~lK~kI~~~~gi 38 (75)
T cd01799 1 LNVSVEDAQSHTVTIWLTVRPDMTVAQLKDKVFLDYGF 38 (75)
T ss_pred CEEEEeccccCCCeEEEEECCCCcHHHHHHHHHHHHCc
Confidence 578898875 77889999999999999999877666
No 4
>smart00282 LamG Laminin G domain.
Probab=53.39 E-value=20 Score=22.91 Aligned_cols=26 Identities=31% Similarity=0.533 Sum_probs=13.5
Q ss_pred eeccCeEEEEEEEeecCceeEEEEcCc
Q psy14194 7 LVGDGTWMLKVYVTDLQIERSLRVKGD 33 (87)
Q Consensus 7 ~~~dgSWeLsV~VtdL~~evtLRVtGD 33 (87)
.+.||.|- .|.|..-+..++|.|.|.
T Consensus 58 ~~~dg~WH-~v~i~~~~~~~~l~VD~~ 83 (135)
T smart00282 58 PLNDGQWH-RVAVERNGRRVTLSVDGE 83 (135)
T ss_pred EeCCCCEE-EEEEEEeCCEEEEEECCC
Confidence 46788883 233333344455555543
No 5
>PLN02800 imidazoleglycerol-phosphate dehydratase
Probab=49.27 E-value=9.7 Score=30.51 Aligned_cols=24 Identities=25% Similarity=0.403 Sum_probs=21.2
Q ss_pred ceeEEEEcCccccchhhhheeecccc
Q psy14194 24 IERSLRVKGDLHIGGVMLRLVEDLVT 49 (87)
Q Consensus 24 ~evtLRVtGDLHIGGVMLKLVE~l~i 49 (87)
.+.+|+.+||+||..+ ++||.+.|
T Consensus 112 fdL~V~a~GDl~vD~H--HtvEDvgI 135 (261)
T PLN02800 112 FDVHVKATGDLWIDDH--HTNEDVAL 135 (261)
T ss_pred CCeEEEEecCccccCC--Cchhhhhh
Confidence 7899999999999985 89998776
No 6
>PRK14705 glycogen branching enzyme; Provisional
Probab=42.70 E-value=14 Score=34.76 Aligned_cols=42 Identities=29% Similarity=0.530 Sum_probs=28.2
Q ss_pred eeEEEEcCccccchhhhheeecc-----cceeecCCCcc--CCCCcceeecCCCc
Q psy14194 25 ERSLRVKGDLHIGGVMLRLVEDL-----VTHMIPSSYSF--GSARPIATHLAPNS 72 (87)
Q Consensus 25 evtLRVtGDLHIGGVMLKLVE~l-----~i~~~~~~~~f--~~~~~~~~~~~~~~ 72 (87)
..++|+-||+|+|-|.. +.+= +... -.| .|+||++.--+|.|
T Consensus 329 ~~~~RIHGD~HLGQVL~--t~~D~~~~~~~~I----IDFEGEP~RpL~ERR~k~s 377 (1224)
T PRK14705 329 GQLQRIHGDLHLGQILQ--VPGAEGQPERWAI----LDFEGEPLRPIDERNSPDV 377 (1224)
T ss_pred cceEEEecccccccEEE--ecCCCCccCCEEE----EecCCCCCCChhhhccCCC
Confidence 46899999999999983 4220 1211 245 69999987666654
No 7
>PF00788 RA: Ras association (RalGDS/AF-6) domain; InterPro: IPR000159 Proteins with this domain are mostly RasGTP effectors and include guanine-nucleotide releasing factor in mammals []. This factor stimulates the dissociation of GDP from the Ras-related RALA and RALB GTPases, which allows GTP binding and activation of the GTPases. It interacts and acts as an effector molecule for R-ras, K-Ras and Rap []. The domain is also present in a number of other proteins among them the sexual differentiation protein in yeast that is essential for mating and meiosis and yeast adenylate cyclase. These proteins contain repeated leucine-rich (LRR) segments.; GO: 0007165 signal transduction; PDB: 3EC8_A 2C5L_D 2BYF_A 2CS4_A 3KH0_A 2B3A_A 1RAX_A 2RGF_A 1WGR_A 1WXA_A ....
Probab=41.96 E-value=25 Score=21.16 Aligned_cols=36 Identities=19% Similarity=0.225 Sum_probs=31.8
Q ss_pred EEEEEEeecCc---eeEEEEcCccccchhhhheeecccc
Q psy14194 14 MLKVYVTDLQI---ERSLRVKGDLHIGGVMLRLVEDLVT 49 (87)
Q Consensus 14 eLsV~VtdL~~---evtLRVtGDLHIGGVMLKLVE~l~i 49 (87)
-|+||..+.+. -++|+|+-+.-...|+-.+.++.++
T Consensus 4 ~lrVy~~~~~~~~~~k~i~v~~~tTa~evi~~~l~k~~l 42 (93)
T PF00788_consen 4 VLRVYDGDGSPGSTYKTIKVSSSTTAREVIEMALEKFGL 42 (93)
T ss_dssp EEEEEETTSSSCCSEEEEEEETTSBHHHHHHHHHHHTTT
T ss_pred EEEEEcCCCCCCccEEEEEECCCCCHHHHHHHHHHHhCC
Confidence 36788888773 7899999999999999999999888
No 8
>COG3281 Ble Uncharacterized protein, probably involved in trehalose biosynthesis [Carbohydrate transport and metabolism]
Probab=37.40 E-value=15 Score=31.47 Aligned_cols=42 Identities=36% Similarity=0.542 Sum_probs=27.4
Q ss_pred eEEEEcCccccchhhhheeecccceeecCCCccCCCCcceeecCCCc
Q psy14194 26 RSLRVKGDLHIGGVMLRLVEDLVTHMIPSSYSFGSARPIATHLAPNS 72 (87)
Q Consensus 26 vtLRVtGDLHIGGVMLKLVE~l~i~~~~~~~~f~~~~~~~~~~~~~~ 72 (87)
+-+||-||||+|-|. |-+=++..|. .-=.|+||.+..-+|.|
T Consensus 283 ~l~RvHGDLHLgQVL---vt~g~~~liD--FEGEPsRpl~err~~~s 324 (438)
T COG3281 283 VLQRVHGDLHLGQVL---VTPGRALLID--FEGEPSRPLDERRAPDS 324 (438)
T ss_pred HHHHHhccceehhee---eeCCcEEEEe--cCCCCCCChhhccCCCC
Confidence 457899999999984 3332333332 22358899888777765
No 9
>TIGR02588 conserved hypothetical protein TIGR02588. The function of this protein is unknown. It is always found as part of a two-gene operon with TIGR02587, a protein that appears to span the membrane seven times. It is found in Nostoc sp. PCC 7120, Agrobacterium tumefaciens, Sinorhizobium meliloti, and Gloeobacter violaceus, so far, all of which are bacterial.
Probab=34.53 E-value=79 Score=22.77 Aligned_cols=45 Identities=16% Similarity=0.372 Sum_probs=32.9
Q ss_pred ccCeEEEEEEEeecC--ceeEEEEcCccccchhhhheeecccceeecC
Q psy14194 9 GDGTWMLKVYVTDLQ--IERSLRVKGDLHIGGVMLRLVEDLVTHMIPS 54 (87)
Q Consensus 9 ~dgSWeLsV~VtdL~--~evtLRVtGDLHIGGVMLKLVE~l~i~~~~~ 54 (87)
.+|..-+...|++.+ .-.+++|.|+|+++|=+..--|. .+.|++.
T Consensus 47 ~~gqyyVpF~V~N~gg~TAasV~V~geL~~~~~v~E~~e~-tiDfl~g 93 (122)
T TIGR02588 47 QTGQYYVPFAIHNLGGTTAAAVNIRGELRQAGAVVENAEV-TIDYLAS 93 (122)
T ss_pred eCCEEEEEEEEEeCCCcEEEEEEEEEEEccCCceeEEeeE-EEEEcCC
Confidence 355667778888887 66789999999999986665554 5544443
No 10
>PF14492 EFG_II: Elongation Factor G, domain II; PDB: 1WDT_A 2DY1_A 2XEX_A 1ELO_A 2XSY_Y 2WRK_Y 1DAR_A 2WRI_Y 2XUY_Y 3J0E_H ....
Probab=34.40 E-value=26 Score=21.80 Aligned_cols=34 Identities=24% Similarity=0.209 Sum_probs=26.5
Q ss_pred EEEEeecCceeEEEEcCccccchhhhheeecccc
Q psy14194 16 KVYVTDLQIERSLRVKGDLHIGGVMLRLVEDLVT 49 (87)
Q Consensus 16 sV~VtdL~~evtLRVtGDLHIGGVMLKLVE~l~i 49 (87)
.+..++-..+.-|+.-|++|+-=+.=+|-++.++
T Consensus 36 ~~~~d~et~e~~l~g~Gelhlev~~~~L~~~~~v 69 (75)
T PF14492_consen 36 RVERDEETGELILSGMGELHLEVLLERLKRRFGV 69 (75)
T ss_dssp EEEEETTTSEEEEEESSHHHHHHHHHHHHHTTCE
T ss_pred EEEEcchhceEEEEECCHHHHHHHHHHHHHHHCC
Confidence 4666666788999999999998777777666554
No 11
>cd00110 LamG Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of purposes including signal transduction via cell-surface steroid receptors, adhesion, migration and differentiation through mediation of cell adhesion molecules.
Probab=33.27 E-value=83 Score=19.89 Aligned_cols=25 Identities=32% Similarity=0.551 Sum_probs=16.2
Q ss_pred eccCeEEEEEEEeecCceeEEEEcCc
Q psy14194 8 VGDGTWMLKVYVTDLQIERSLRVKGD 33 (87)
Q Consensus 8 ~~dgSWeLsV~VtdL~~evtLRVtGD 33 (87)
+.||.|- .|.|+..+..++|.|-|.
T Consensus 77 v~dg~Wh-~v~i~~~~~~~~l~VD~~ 101 (151)
T cd00110 77 LNDGQWH-SVSVERNGRSVTLSVDGE 101 (151)
T ss_pred cCCCCEE-EEEEEECCCEEEEEECCc
Confidence 5688885 445555556677777775
No 12
>PF03173 CHB_HEX: Putative carbohydrate binding domain; InterPro: IPR004866 This domain represents the N-terminal domain in chitobiases and beta-hexosaminidases 3.2.1.52 from EC. Chitobiases degrade chitin, which forms the exoskeleton in insects and crustaceans, and which is one of the most abundant polysaccharides on earth []. Beta-hexosaminidases are composed of either a HexA/HexB heterodimer or a HexB homodimer, and can hydrolyse diverse substrates, including GM(2)-gangliosides; mutations in this enzyme are associated with Tay-Sachs disease []. HexB is structurally similar to chitobiase, consisting of a beta sandwich structure; this structure is similar to that found in the cellulose-binding domain of cellulase from Cellulomonas fimi (IPR001919 from INTERPRO), suggesting that it may function as a carbohydrate-binding domain.; GO: 0030246 carbohydrate binding; PDB: 1C7T_A 1QBA_A 1QBB_A 1C7S_A.
Probab=31.00 E-value=49 Score=24.18 Aligned_cols=12 Identities=33% Similarity=0.628 Sum_probs=8.4
Q ss_pred ceeEEE-EcCccc
Q psy14194 24 IERSLR-VKGDLH 35 (87)
Q Consensus 24 ~evtLR-VtGDLH 35 (87)
.+++|+ |.||||
T Consensus 67 ~~f~i~hinGDl~ 79 (164)
T PF03173_consen 67 DQFKITHINGDLH 79 (164)
T ss_dssp TTEEEEE-STTEE
T ss_pred CCeEEEEEcCeEE
Confidence 567776 888887
No 13
>PF00475 IGPD: Imidazoleglycerol-phosphate dehydratase; InterPro: IPR000807 Imidazoleglycerol-phosphate dehydratase is the enzyme that catalyses the seventh step in the biosynthesis of histidine in bacteria, fungi and plants. In most organisms it is a monofunctional protein of about 22 to 29 kD. In some bacteria such as Escherichia coli, it is the C-terminal domain of a bifunctional protein that include a histidinol-phosphatase domain [].; GO: 0004424 imidazoleglycerol-phosphate dehydratase activity, 0000105 histidine biosynthetic process; PDB: 2F1D_G 2AE8_A 1RHY_B.
Probab=30.30 E-value=21 Score=26.24 Aligned_cols=25 Identities=32% Similarity=0.488 Sum_probs=16.8
Q ss_pred CceeEEEEcCccccchhhhheeecccc
Q psy14194 23 QIERSLRVKGDLHIGGVMLRLVEDLVT 49 (87)
Q Consensus 23 ~~evtLRVtGDLHIGGVMLKLVE~l~i 49 (87)
+.+.+|+.+||++|.. .++||.+.|
T Consensus 18 ~~dl~v~a~GDl~vD~--HHtvEDvgI 42 (145)
T PF00475_consen 18 GFDLSVKAKGDLEVDD--HHTVEDVGI 42 (145)
T ss_dssp T-EEEEEEEC-TTT-C--HHHHHHHHH
T ss_pred CCCEEEEEeCCCCcCc--ceehhhHHH
Confidence 3678999999999876 466776555
No 14
>PTZ00044 ubiquitin; Provisional
Probab=30.29 E-value=54 Score=19.47 Aligned_cols=34 Identities=18% Similarity=0.229 Sum_probs=27.9
Q ss_pred EEEEeecC-ceeEEEEcCccccchhhhheeecccc
Q psy14194 16 KVYVTDLQ-IERSLRVKGDLHIGGVMLRLVEDLVT 49 (87)
Q Consensus 16 sV~VtdL~-~evtLRVtGDLHIGGVMLKLVE~l~i 49 (87)
.|+|..++ ...+++|..+.-|+.+..+|-+..++
T Consensus 2 ~i~vk~~~G~~~~l~v~~~~tv~~lK~~i~~~~gi 36 (76)
T PTZ00044 2 QILIKTLTGKKQSFNFEPDNTVQQVKMALQEKEGI 36 (76)
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCC
Confidence 36777776 77899999999999999999776554
No 15
>PRK01406 gltX glutamyl-tRNA synthetase; Reviewed
Probab=28.90 E-value=21 Score=29.73 Aligned_cols=14 Identities=50% Similarity=0.755 Sum_probs=10.2
Q ss_pred cCccccchhhhhee
Q psy14194 31 KGDLHIGGVMLRLV 44 (87)
Q Consensus 31 tGDLHIGGVMLKLV 44 (87)
+|.|||||+---|.
T Consensus 14 tG~lHiG~~rtal~ 27 (476)
T PRK01406 14 TGYLHIGGARTALF 27 (476)
T ss_pred CCcccHHHHHHHHH
Confidence 68899988755444
No 16
>PRK12558 glutamyl-tRNA synthetase; Provisional
Probab=28.86 E-value=21 Score=29.93 Aligned_cols=14 Identities=36% Similarity=0.627 Sum_probs=9.6
Q ss_pred cCccccchhhhhee
Q psy14194 31 KGDLHIGGVMLRLV 44 (87)
Q Consensus 31 tGDLHIGGVMLKLV 44 (87)
+|.|||||+---|.
T Consensus 12 TG~lHiG~artAL~ 25 (445)
T PRK12558 12 TGYLHVGNARTALL 25 (445)
T ss_pred CCcccHHHHHHHHH
Confidence 68888888754443
No 17
>PF00579 tRNA-synt_1b: tRNA synthetases class I (W and Y); InterPro: IPR002305 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2JAN_A 3P0J_B 3P0I_B 3P0H_B 1YID_C 2A4M_C 1YIA_C 1YI8_C 2EL7_A 3PRH_A ....
Probab=28.76 E-value=23 Score=26.62 Aligned_cols=12 Identities=42% Similarity=0.852 Sum_probs=7.9
Q ss_pred EEcCccccchhh
Q psy14194 29 RVKGDLHIGGVM 40 (87)
Q Consensus 29 RVtGDLHIGGVM 40 (87)
.=||++|||.++
T Consensus 13 ~PTg~lHlG~l~ 24 (292)
T PF00579_consen 13 DPTGDLHLGHLV 24 (292)
T ss_dssp ESSSS-BHHHHH
T ss_pred CCCCcccchHHH
Confidence 348999999543
No 18
>KOG4279|consensus
Probab=28.46 E-value=13 Score=34.98 Aligned_cols=38 Identities=42% Similarity=0.663 Sum_probs=29.1
Q ss_pred hhhhheeecccceeecCCCccCCCCcceeecCCCceeeeeeeecc
Q psy14194 38 GVMLRLVEDLVTHMIPSSYSFGSARPIATHLAPNSYSFALTRRSL 82 (87)
Q Consensus 38 GVMLKLVE~l~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 82 (87)
+-|.+|||.++.. |+ +| +-.+||-.---|.|||.||..
T Consensus 218 ~amirLVe~Lk~i--P~--t~---~vve~~nv~f~YaFALNRRNr 255 (1226)
T KOG4279|consen 218 DAMIRLVEDLKRI--PD--TL---KVVETHNVRFHYAFALNRRNR 255 (1226)
T ss_pred HHHHHHHHHHHhC--cc--hh---hhhccCceEEEeeehhcccCC
Confidence 5688999999883 32 34 345788888889999999964
No 19
>PRK13598 hisB imidazoleglycerol-phosphate dehydratase; Provisional
Probab=28.04 E-value=34 Score=26.24 Aligned_cols=24 Identities=17% Similarity=0.256 Sum_probs=21.1
Q ss_pred ceeEEEEcCccccchhhhheeecccc
Q psy14194 24 IERSLRVKGDLHIGGVMLRLVEDLVT 49 (87)
Q Consensus 24 ~evtLRVtGDLHIGGVMLKLVE~l~i 49 (87)
.+.+|..+||+||.. .++||.+.|
T Consensus 50 ~dL~v~a~GDl~vD~--HHtvEDvgI 73 (193)
T PRK13598 50 STATVSATDKLPYDD--HHIVEDVAI 73 (193)
T ss_pred CCeEEEEecCccccC--CCchhhhhh
Confidence 778999999999988 688988777
No 20
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=27.74 E-value=5.2 Score=32.93 Aligned_cols=37 Identities=32% Similarity=0.425 Sum_probs=26.5
Q ss_pred hhhhheeecccceeecCCCccCCCCcceeecCCCceeeeeeeecc
Q psy14194 38 GVMLRLVEDLVTHMIPSSYSFGSARPIATHLAPNSYSFALTRRSL 82 (87)
Q Consensus 38 GVMLKLVE~l~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 82 (87)
.-|.+|||.++.. ++++- ..+|.----|.|||.||.-
T Consensus 158 damI~Lve~l~~~-----p~~~~---~~~~~i~~~yafALnRrn~ 194 (374)
T PF13281_consen 158 DAMIKLVETLEAL-----PTCDV---ANQHNIKFQYAFALNRRNK 194 (374)
T ss_pred HHHHHHHHHhhcc-----Cccch---hcchHHHHHHHHHHhhccc
Confidence 4589999998885 55553 3355555589999999753
No 21
>cd07914 IGPD Imidazoleglycerol-phosphate dehydratase. Imidazoleglycerol-phosphate dehydratase (IGPD; EC 4.2.1.19) catalyzes the dehydration of imidazole glycerol phosphate to imidazole acetol phosphate, the sixth step of histidine biosynthesis in plants and microorganisms where the histidine is synthesized de novo. There is an internal repeat in the protein domain that is related by pseudo-dyad symmetry, perhaps as a result of an ancient gene duplication. The apo-form of IGPD exists as a catalytically inactive trimer which, in the presence of specific divalent metal cations such as manganese (Mn2+), cobalt (Co2+), cadmium (Cd2+), nickel (Ni2+), iron (Fe2+) and zinc (Zn2+), assembles to form a biologically active high molecular weight metalloenzyme; a 24-mer with 4-3-2 symmetry. Each 24-mer has 24 active sites, and contains around 1.5 metal ions per monomer, each monomer contributing residues to three separate active sites. IGPD enzymes are monofunctional in fungi, plants, archaea and s
Probab=27.66 E-value=34 Score=26.14 Aligned_cols=24 Identities=29% Similarity=0.512 Sum_probs=20.3
Q ss_pred ceeEEEEcCccccchhhhheeecccc
Q psy14194 24 IERSLRVKGDLHIGGVMLRLVEDLVT 49 (87)
Q Consensus 24 ~evtLRVtGDLHIGGVMLKLVE~l~i 49 (87)
.+.+|..+||+||-. .++||.+.|
T Consensus 46 ~dL~v~a~GDl~vD~--HHtvEDvgI 69 (190)
T cd07914 46 FDLTVKAKGDLEVDD--HHTVEDVGI 69 (190)
T ss_pred CCeEEEEecCccccC--CcchhhhHh
Confidence 778999999999987 678887666
No 22
>PF02120 Flg_hook: Flagellar hook-length control protein FliK; InterPro: IPR021136 This entry represents the C-terminal domain of the flagellar hook-length control protein FliK. This entry also includes YscP of the Yersinia type III secretion system, and equivalent proteins in other pathogenic bacterial type III secretion systems. During flagellar morphogenesis in Salmonella typhimurium and Escherichia coli, flagellar hook-length control protein (FliK) controls the length of the hook by directly measuring the hook length [, ]. It is considered unlikely that FliK functions as a molecular ruler for determining hook length, but that it is more likely to be employing a novel mechanism. The deduced amino acid sequences of FliK proteins from S. typhimurium and E. coli have molecular masses of 41,748 and 39,246 Da, respectively, and are fairly hydrophilic []. Sequence comparison reveals around 50% identity, with greatest conservation in the C-terminal region, with 71% identity in the last 154 amino acids - mutagenesis of this conserved region completely abolishes motility. The central and C-terminal regions are rich in proline and glutamine respectively; it is thought that they may constitute distinct domains [].; PDB: 2RRL_A.
Probab=27.23 E-value=61 Score=19.61 Aligned_cols=25 Identities=28% Similarity=0.682 Sum_probs=15.8
Q ss_pred ccCeEEEEEEEeecC---ceeEEEEcCc
Q psy14194 9 GDGTWMLKVYVTDLQ---IERSLRVKGD 33 (87)
Q Consensus 9 ~dgSWeLsV~VtdL~---~evtLRVtGD 33 (87)
..+.|.+++.++-.. ..++|++.|+
T Consensus 9 ~~~~~~~~l~L~p~~LG~v~v~l~~~~~ 36 (85)
T PF02120_consen 9 SNGSWELSLQLDPPELGSVEVKLRLQGG 36 (85)
T ss_dssp HHT--EEEE--SSGGG--EEEEEEEETT
T ss_pred cCCceEEEEEEcccccCcEEEEEEEeCC
Confidence 356899999887544 7888888877
No 23
>cd00418 GlxRS_core catalytic core domain of glutamyl-tRNA and glutaminyl-tRNA synthetase. Glutamyl-tRNA synthetase(GluRS)/Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Glu or Gln, respectively, to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea, cellular organelles, and some bacteria lack GlnRS. In these cases, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. The discriminating form of GluRS differs from GlnRS and the non-discriminating form of GluRS in their C-terminal anti-codon bind
Probab=27.10 E-value=23 Score=27.10 Aligned_cols=16 Identities=38% Similarity=0.420 Sum_probs=11.9
Q ss_pred cCccccchhhhheeec
Q psy14194 31 KGDLHIGGVMLRLVED 46 (87)
Q Consensus 31 tGDLHIGGVMLKLVE~ 46 (87)
+|.||||++---|+.-
T Consensus 11 tG~lHlG~~r~al~n~ 26 (230)
T cd00418 11 TGYLHIGHARTALFNF 26 (230)
T ss_pred CCcccHHHHHHHHHHH
Confidence 6999999976655543
No 24
>PF03633 Glyco_hydro_65C: Glycosyl hydrolase family 65, C-terminal domain ; InterPro: IPR005194 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This family of glycosyl hydrolases (GH65 from CAZY) contains this domain and includes vacuolar acid trehalase and maltose phosphorylases. Maltose phosphorylase (MP) is a dimeric enzyme that catalyzes the conversion of maltose and inorganic phosphate into beta-D-glucose-1-phosphate and glucose. The C-terminal domain forms a two layered jelly roll motif. This domain is situated at the base of the catalytic domain, however its function remains unknown [].; PDB: 1H54_A.
Probab=26.95 E-value=1e+02 Score=17.72 Aligned_cols=17 Identities=29% Similarity=0.653 Sum_probs=9.8
Q ss_pred cCeEEEEEEEeecCceeE
Q psy14194 10 DGTWMLKVYVTDLQIERS 27 (87)
Q Consensus 10 dgSWeLsV~VtdL~~evt 27 (87)
-|.| |.|.|+.-...++
T Consensus 17 rg~~-l~v~i~~~~v~v~ 33 (54)
T PF03633_consen 17 RGHW-LEVEITHEKVTVT 33 (54)
T ss_dssp TTEE-EEEEEETTEEEEE
T ss_pred CCEE-EEEEEECCEEEEE
Confidence 3455 7788887443333
No 25
>PRK05446 imidazole glycerol-phosphate dehydratase/histidinol phosphatase; Provisional
Probab=26.77 E-value=28 Score=28.18 Aligned_cols=24 Identities=42% Similarity=0.606 Sum_probs=20.2
Q ss_pred ceeEEEEcCccccchhhhheeecccc
Q psy14194 24 IERSLRVKGDLHIGGVMLRLVEDLVT 49 (87)
Q Consensus 24 ~evtLRVtGDLHIGGVMLKLVE~l~i 49 (87)
.+.+|+.+||+||.. .++||.+.|
T Consensus 213 ~~l~v~~~gd~~vd~--hh~~ed~~i 236 (354)
T PRK05446 213 FRLEIKVKGDLHIDD--HHTVEDTAL 236 (354)
T ss_pred CCeEEEEecCccccC--CchHHHHHH
Confidence 789999999999987 678886665
No 26
>KOG3073|consensus
Probab=26.47 E-value=31 Score=27.55 Aligned_cols=66 Identities=21% Similarity=0.370 Sum_probs=40.9
Q ss_pred eEEEEEEEeecCceeEEEEcCccc-------cchhhhheeecccceeecCCCccC--CCCcceeecCCCceeeeee
Q psy14194 12 TWMLKVYVTDLQIERSLRVKGDLH-------IGGVMLRLVEDLVTHMIPSSYSFG--SARPIATHLAPNSYSFALT 78 (87)
Q Consensus 12 SWeLsV~VtdL~~evtLRVtGDLH-------IGGVMLKLVE~l~i~~~~~~~~f~--~~~~~~~~~~~~~~~~~~~ 78 (87)
+=.|.|||... +.+=|-|...+- ..|+|.+|..++.|+-..+.--.. =..|+..||.||+--..+.
T Consensus 92 AgkLqVyi~T~-knvLiEvnp~~rIPrtfkrfsglMvqLLhKlsIra~d~~~kLlkVvKNPVtdHlPv~~~Ki~lS 166 (236)
T KOG3073|consen 92 AGKLQVYIHTA-KNVLIEVNPQVRIPRTFKRFSGLMVQLLHKLSIRAVDGTEKLLKVVKNPVTDHLPVNSRKIGLS 166 (236)
T ss_pred cceeEEEEEcc-CceEEEecccccCCCCHHHHHHHHHHHHHHheEeccCchHHHHHHhcCcccccCCCCccEEeec
Confidence 34577888653 334444555544 479999999999885221110000 1359999999999766554
No 27
>PRK00927 tryptophanyl-tRNA synthetase; Reviewed
Probab=26.29 E-value=17 Score=28.61 Aligned_cols=20 Identities=35% Similarity=0.526 Sum_probs=14.7
Q ss_pred EEcCccccc---hhhhheeeccc
Q psy14194 29 RVKGDLHIG---GVMLRLVEDLV 48 (87)
Q Consensus 29 RVtGDLHIG---GVMLKLVE~l~ 48 (87)
+=+|.+||| |.|-++++-++
T Consensus 9 ~PTG~lHLG~~~g~~~~~~~lQ~ 31 (333)
T PRK00927 9 QPTGKLHLGNYLGAIKNWVELQD 31 (333)
T ss_pred CCCccchHHhHHHHHHHHHHHHh
Confidence 458999999 67777766544
No 28
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=26.28 E-value=68 Score=17.71 Aligned_cols=34 Identities=18% Similarity=0.099 Sum_probs=26.8
Q ss_pred EEEEeecCceeEEEEcCccccchhhhheeecccc
Q psy14194 16 KVYVTDLQIERSLRVKGDLHIGGVMLRLVEDLVT 49 (87)
Q Consensus 16 sV~VtdL~~evtLRVtGDLHIGGVMLKLVE~l~i 49 (87)
.|+|...+....++|..+.-|+.+.-++-+..++
T Consensus 2 ~i~vk~~~~~~~~~v~~~~tv~~lk~~i~~~~~~ 35 (64)
T smart00213 2 ELTVKTLDGTITLEVKPSDTVSELKEKIAELTGI 35 (64)
T ss_pred EEEEEECCceEEEEECCCCcHHHHHHHHHHHHCC
Confidence 4666666667788999999999999998776654
No 29
>CHL00094 dnaK heat shock protein 70
Probab=26.13 E-value=1.1e+02 Score=25.85 Aligned_cols=32 Identities=28% Similarity=0.433 Sum_probs=21.1
Q ss_pred eccCeEEEEEEEeecCceeE-EEEcCccccchhh
Q psy14194 8 VGDGTWMLKVYVTDLQIERS-LRVKGDLHIGGVM 40 (87)
Q Consensus 8 ~~dgSWeLsV~VtdL~~evt-LRVtGDLHIGGVM 40 (87)
.|.|+++.+|.-..-+ .++ +-..||.|+||--
T Consensus 194 lGgGT~DvSv~~~~~~-~~~vla~~gd~~lGG~d 226 (621)
T CHL00094 194 LGGGTFDVSILEVGDG-VFEVLSTSGDTHLGGDD 226 (621)
T ss_pred cCCCeEEEEEEEEcCC-EEEEEEEecCCCcChHH
Confidence 5788888887644322 222 3368999999963
No 30
>PF00749 tRNA-synt_1c: tRNA synthetases class I (E and Q), catalytic domain; InterPro: IPR020058 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of Escherichia coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure []. ; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 2HZ7_A 2CFO_A 4A91_A 1NZJ_A 1N78_A 1G59_C 2CV2_A 2CV1_A 2CV0_B 1GLN_A ....
Probab=26.13 E-value=26 Score=27.40 Aligned_cols=14 Identities=43% Similarity=0.605 Sum_probs=9.7
Q ss_pred cCccccchhhhhee
Q psy14194 31 KGDLHIGGVMLRLV 44 (87)
Q Consensus 31 tGDLHIGGVMLKLV 44 (87)
+|.||||++---|.
T Consensus 11 tG~lHiG~~r~al~ 24 (314)
T PF00749_consen 11 TGYLHIGHARTALL 24 (314)
T ss_dssp SSS-BHHHHHHHHH
T ss_pred CCCcccchhHHHHH
Confidence 69999998765554
No 31
>TIGR00464 gltX_bact glutamyl-tRNA synthetase, bacterial family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the bacterial and mitochondrial forms of the enzyme. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu). This model is highly specific. Proteins with positive scores below the trusted cutoff may be fragments rather than full-length sequences.
Probab=25.56 E-value=26 Score=29.09 Aligned_cols=14 Identities=50% Similarity=0.755 Sum_probs=9.6
Q ss_pred cCccccchhhhhee
Q psy14194 31 KGDLHIGGVMLRLV 44 (87)
Q Consensus 31 tGDLHIGGVMLKLV 44 (87)
+|.||||++---|.
T Consensus 11 tG~lHiG~~rtal~ 24 (470)
T TIGR00464 11 TGYLHIGGARTALF 24 (470)
T ss_pred CCcccHHHHHHHHH
Confidence 68888887755444
No 32
>PF09783 Vac_ImportDeg: Vacuolar import and degradation protein; InterPro: IPR018618 Members of this family are involved in the negative regulation of gluconeogenesis. They are required for both proteosome-dependent and vacuolar catabolite degradation of fructose-1,6-bisphosphatase (FBPase), where they probably regulate FBPase targeting from the FBPase-containing vesicles to the vacuole [, ].
Probab=25.43 E-value=53 Score=24.46 Aligned_cols=52 Identities=19% Similarity=0.275 Sum_probs=35.3
Q ss_pred ccCeEEEEEEEeecCceeEEEEcCccccchhhhh---eeecccceeec-CCCccCCC
Q psy14194 9 GDGTWMLKVYVTDLQIERSLRVKGDLHIGGVMLR---LVEDLVTHMIP-SSYSFGSA 61 (87)
Q Consensus 9 ~dgSWeLsV~VtdL~~evtLRVtGDLHIGGVMLK---LVE~l~i~~~~-~~~~f~~~ 61 (87)
+..+|+..|.+.+.+.+ +-.++|-|.|.|+--+ |+-=.+...|- +.++|-..
T Consensus 16 ~~~~y~V~V~i~~VDl~-~~~l~G~l~i~glt~~~p~itTfFeGEII~~~~~~F~T~ 71 (176)
T PF09783_consen 16 GREKYPVKVTIKTVDLP-NSHLCGYLEIKGLTDDHPEITTFFEGEIIGFNKHSFLTE 71 (176)
T ss_pred CCcceEEEEEEEEecCC-cCEEEEEEEEecCCCCCCcEEEEEeeEEecCCCCceecc
Confidence 46699999999988766 7789999999988654 23233333444 55555443
No 33
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=25.01 E-value=1.2e+02 Score=25.49 Aligned_cols=33 Identities=27% Similarity=0.457 Sum_probs=21.9
Q ss_pred eccCeEEEEEEEeecCceeEEEEcCccccchhh
Q psy14194 8 VGDGTWMLKVYVTDLQIERSLRVKGDLHIGGVM 40 (87)
Q Consensus 8 ~~dgSWeLsV~VtdL~~evtLRVtGDLHIGGVM 40 (87)
.|.|+.+.+|.-.+-+.-.-+...||.|+||--
T Consensus 192 ~GggT~dvsv~~~~~~~~~vla~~gd~~lGG~d 224 (627)
T PRK00290 192 LGGGTFDVSILEIGDGVFEVLSTNGDTHLGGDD 224 (627)
T ss_pred CCCCeEEEEEEEEeCCeEEEEEecCCCCcChHH
Confidence 577888887765543322234578999999953
No 34
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=24.12 E-value=1.2e+02 Score=25.07 Aligned_cols=33 Identities=27% Similarity=0.444 Sum_probs=21.0
Q ss_pred eccCeEEEEEEEeecCceeEEEEcCccccchhh
Q psy14194 8 VGDGTWMLKVYVTDLQIERSLRVKGDLHIGGVM 40 (87)
Q Consensus 8 ~~dgSWeLsV~VtdL~~evtLRVtGDLHIGGVM 40 (87)
.|.|+++.+|.-.+-+.-.-+-..||.|+||--
T Consensus 190 ~Gggt~dvsv~~~~~~~~~v~~~~gd~~lGG~d 222 (595)
T TIGR02350 190 LGGGTFDVSILEIGDGVFEVLSTAGDTHLGGDD 222 (595)
T ss_pred CCCCeEEEEEEEecCCeEEEEEecCCcccCchh
Confidence 577888887764443211123467999999953
No 35
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=23.65 E-value=1e+02 Score=17.89 Aligned_cols=34 Identities=15% Similarity=0.097 Sum_probs=27.5
Q ss_pred EEEEeecC-ceeEEEEcCccccchhhhheeecccc
Q psy14194 16 KVYVTDLQ-IERSLRVKGDLHIGGVMLRLVEDLVT 49 (87)
Q Consensus 16 sV~VtdL~-~evtLRVtGDLHIGGVMLKLVE~l~i 49 (87)
.|+|..++ ..++++|..+.-|+.+.-++-++.++
T Consensus 2 ~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~g~ 36 (76)
T cd01806 2 LIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGI 36 (76)
T ss_pred EEEEEeCCCCEEEEEECCCCCHHHHHHHHhHhhCC
Confidence 46777775 77889999999999999998776554
No 36
>KOG0100|consensus
Probab=23.38 E-value=1e+02 Score=27.55 Aligned_cols=30 Identities=33% Similarity=0.612 Sum_probs=19.9
Q ss_pred ccCeEEEEEEEeecCceeEEEEcCccccch
Q psy14194 9 GDGTWMLKVYVTDLQIERSLRVKGDLHIGG 38 (87)
Q Consensus 9 ~dgSWeLsV~VtdL~~evtLRVtGDLHIGG 38 (87)
|.|+++.|+.--|-+.=--+--.||.|+||
T Consensus 233 GGGTFDVSlLtIdnGVFeVlaTnGDThLGG 262 (663)
T KOG0100|consen 233 GGGTFDVSLLTIDNGVFEVLATNGDTHLGG 262 (663)
T ss_pred CCceEEEEEEEEcCceEEEEecCCCcccCc
Confidence 556676666555544333455789999999
No 37
>PTZ00126 tyrosyl-tRNA synthetase; Provisional
Probab=23.17 E-value=23 Score=28.92 Aligned_cols=19 Identities=16% Similarity=0.261 Sum_probs=12.1
Q ss_pred EcCccccch-hhh--heeeccc
Q psy14194 30 VKGDLHIGG-VML--RLVEDLV 48 (87)
Q Consensus 30 VtGDLHIGG-VML--KLVE~l~ 48 (87)
=+|++|||- +|- ++++-++
T Consensus 75 PTG~lHLG~g~i~~~~~~~lq~ 96 (383)
T PTZ00126 75 PSGRMHIAQGILKAINVNKLTK 96 (383)
T ss_pred CCCcccccchHhHhHHHHHHHh
Confidence 489999994 543 4555333
No 38
>PRK12410 glutamylglutaminyl-tRNA synthetase; Provisional
Probab=23.10 E-value=31 Score=28.91 Aligned_cols=13 Identities=38% Similarity=0.828 Sum_probs=7.6
Q ss_pred cCccccchhhhhe
Q psy14194 31 KGDLHIGGVMLRL 43 (87)
Q Consensus 31 tGDLHIGGVMLKL 43 (87)
+|.|||||+---|
T Consensus 9 TG~LHiG~artAL 21 (433)
T PRK12410 9 TGDMHIGNLRAAI 21 (433)
T ss_pred CCcccHHHHHHHH
Confidence 5667776654433
No 39
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=23.04 E-value=1e+02 Score=17.81 Aligned_cols=34 Identities=15% Similarity=0.087 Sum_probs=28.0
Q ss_pred EEEEeecCceeEEEEcCccccchhhhheeecccc
Q psy14194 16 KVYVTDLQIERSLRVKGDLHIGGVMLRLVEDLVT 49 (87)
Q Consensus 16 sV~VtdL~~evtLRVtGDLHIGGVMLKLVE~l~i 49 (87)
.|.|...+...+++|..+.-|+.++-++-++.++
T Consensus 2 ~i~vk~~g~~~~i~v~~~~tv~~lK~~i~~~~gi 35 (71)
T cd01812 2 RVRVKHGGESHDLSISSQATFGDLKKMLAPVTGV 35 (71)
T ss_pred EEEEEECCEEEEEEECCCCcHHHHHHHHHHhhCC
Confidence 4677777778899999999999999988766554
No 40
>PRK05710 glutamyl-Q tRNA(Asp) synthetase; Reviewed
Probab=22.49 E-value=32 Score=27.33 Aligned_cols=15 Identities=33% Similarity=0.589 Sum_probs=10.3
Q ss_pred cCccccchhhhheee
Q psy14194 31 KGDLHIGGVMLRLVE 45 (87)
Q Consensus 31 tGDLHIGGVMLKLVE 45 (87)
+|.||||++---|..
T Consensus 15 TG~LHlG~~rtAL~n 29 (299)
T PRK05710 15 SGPLHFGSLVAALGS 29 (299)
T ss_pred CCcccHHHHHHHHHH
Confidence 688888887555543
No 41
>TIGR03838 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthetase. This protein resembles a shortened glutamyl-tRNA ligase, but its purpose is to modify tRNA(Asp) at a queuosine position in the anticodon rather than to charge a tRNA with its cognate amino acid.
Probab=22.37 E-value=33 Score=26.84 Aligned_cols=13 Identities=38% Similarity=0.759 Sum_probs=7.3
Q ss_pred cCccccchhhhhe
Q psy14194 31 KGDLHIGGVMLRL 43 (87)
Q Consensus 31 tGDLHIGGVMLKL 43 (87)
+|.||||++---|
T Consensus 10 tG~lHiG~~rtAL 22 (272)
T TIGR03838 10 SGPLHFGSLVAAL 22 (272)
T ss_pred CCcccHHHHHHHH
Confidence 5667776554333
No 42
>PRK00951 hisB imidazoleglycerol-phosphate dehydratase; Validated
Probab=22.30 E-value=40 Score=25.83 Aligned_cols=24 Identities=38% Similarity=0.602 Sum_probs=19.9
Q ss_pred ceeEEEEcCccccchhhhheeecccc
Q psy14194 24 IERSLRVKGDLHIGGVMLRLVEDLVT 49 (87)
Q Consensus 24 ~evtLRVtGDLHIGGVMLKLVE~l~i 49 (87)
.+.+|..+||+||-. .++||.+.|
T Consensus 50 ~dL~v~a~GDl~vD~--HHtvEDvgI 73 (195)
T PRK00951 50 FDLTVKAKGDLHIDD--HHTVEDVGI 73 (195)
T ss_pred CCeEEEEecCccccC--CchHHHHHH
Confidence 778999999999987 577877665
No 43
>PF00630 Filamin: Filamin/ABP280 repeat; InterPro: IPR017868 The many different actin cross-linking proteins share a common architecture, consisting of a globular actin-binding domain and an extended rod. Whereas their actin-binding domains consist of two calponin homology domains (see IPR001715 from INTERPRO), their rods fall into three families. The rod domain of the family including the Dictyostelium discoideum (Slime mould) gelation factor (ABP120) and human filamin (ABP280) is constructed from tandem repeats of a 100-residue motif that is glycine and proline rich []. The gelation factor's rod contains 6 copies of the repeat, whereas filamin has a rod constructed from 24 repeats. The resolution of the 3D structure of rod repeats from the gelation factor has shown that they consist of a beta-sandwich, formed by two beta-sheets arranged in an immunoglobulin-like fold [, ]. Because conserved residues that form the core of the repeats are preserved in filamin, the repeat structure should be common to the members of the gelation factor/filamin family. The head to tail homodimerisation is crucial to the function of the ABP120 and ABP280 proteins. This interaction involves a small portion at the distal end of the rod domains. For the gelation factor it has been shown that the carboxy-terminal repeat 6 dimerises through a double edge-to-edge extension of the beta-sheet and that repeat 5 contributes to dimerisation to some extent [, , ].; PDB: 2DI9_A 2EEC_A 2DIC_A 2EEA_A 2DMC_A 2EE9_A 2D7O_A 2D7N_A 2K7P_A 2NQC_A ....
Probab=22.05 E-value=1.8e+02 Score=17.71 Aligned_cols=29 Identities=31% Similarity=0.512 Sum_probs=14.9
Q ss_pred ccCeEEEEEEEeecC-ceeEEEEcCccccch
Q psy14194 9 GDGTWMLKVYVTDLQ-IERSLRVKGDLHIGG 38 (87)
Q Consensus 9 ~dgSWeLsV~VtdL~-~evtLRVtGDLHIGG 38 (87)
++|+|.++......+ -.+.+.+.| .||.|
T Consensus 68 ~~G~y~v~y~p~~~G~y~i~V~~~g-~~I~g 97 (101)
T PF00630_consen 68 GDGTYTVSYTPTEPGKYKISVKING-QPIPG 97 (101)
T ss_dssp SSSEEEEEEEESSSEEEEEEEEESS-EB-TT
T ss_pred CCCEEEEEEEeCccEeEEEEEEECC-EECcC
Confidence 456666666666555 445555533 35443
No 44
>PF09937 DUF2169: Uncharacterized protein conserved in bacteria (DUF2169); InterPro: IPR018683 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=21.93 E-value=95 Score=24.20 Aligned_cols=24 Identities=38% Similarity=0.613 Sum_probs=19.8
Q ss_pred CeEEEEEEEeecCceeEEEEcCcccc
Q psy14194 11 GTWMLKVYVTDLQIERSLRVKGDLHI 36 (87)
Q Consensus 11 gSWeLsV~VtdL~~evtLRVtGDLHI 36 (87)
.+|+.+|.|.+ ..++|+|.||=+-
T Consensus 77 ~~~~V~v~vg~--~~K~l~V~G~R~W 100 (297)
T PF09937_consen 77 TSWDVRVRVGD--LSKRLRVFGDRYW 100 (297)
T ss_pred ceEEEEEEEcC--cceEEEEEeeeEE
Confidence 48999999999 5578999999554
No 45
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=21.86 E-value=1.5e+02 Score=25.07 Aligned_cols=32 Identities=25% Similarity=0.413 Sum_probs=21.1
Q ss_pred eccCeEEEEEEEeecCceeEEEEcCccccchh
Q psy14194 8 VGDGTWMLKVYVTDLQIERSLRVKGDLHIGGV 39 (87)
Q Consensus 8 ~~dgSWeLsV~VtdL~~evtLRVtGDLHIGGV 39 (87)
.|.|+.+.+|.-.+-+.-.-+...||.|+||-
T Consensus 188 lGgGT~DvSi~~~~~~~~~vla~~gd~~lGG~ 219 (599)
T TIGR01991 188 LGGGTFDVSILKLTKGVFEVLATGGDSALGGD 219 (599)
T ss_pred cCCCeEEEEEEEEcCCeEEEEEEcCCCCCCHH
Confidence 57788887776544332112456899999994
No 46
>PRK14895 gltX glutamyl-tRNA synthetase; Provisional
Probab=21.83 E-value=34 Score=29.40 Aligned_cols=15 Identities=40% Similarity=0.550 Sum_probs=10.8
Q ss_pred cCccccchhhhheee
Q psy14194 31 KGDLHIGGVMLRLVE 45 (87)
Q Consensus 31 tGDLHIGGVMLKLVE 45 (87)
||.|||||+.--|..
T Consensus 14 TG~lHiG~artAL~n 28 (513)
T PRK14895 14 TGFLHIGSARTALFN 28 (513)
T ss_pred CCCccHHHHHHHHHH
Confidence 588999987665543
No 47
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=21.42 E-value=1e+02 Score=18.45 Aligned_cols=34 Identities=26% Similarity=0.147 Sum_probs=26.8
Q ss_pred EEEEeecC-ceeEEEEcCccccchhhhheeecccc
Q psy14194 16 KVYVTDLQ-IERSLRVKGDLHIGGVMLRLVEDLVT 49 (87)
Q Consensus 16 sV~VtdL~-~evtLRVtGDLHIGGVMLKLVE~l~i 49 (87)
.|+|..++ ..+++.|.++--|+.+.-++-++.++
T Consensus 2 ~i~vk~~~G~~~~l~v~~~~tV~~lK~~i~~~~gi 36 (74)
T cd01807 2 FLTVKLLQGRECSLQVSEKESVSTLKKLVSEHLNV 36 (74)
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCC
Confidence 35666654 77889999999999999988776554
No 48
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=20.38 E-value=1.7e+02 Score=24.93 Aligned_cols=31 Identities=26% Similarity=0.455 Sum_probs=20.9
Q ss_pred eccCeEEEEEEEeecCceeE-EEEcCccccchh
Q psy14194 8 VGDGTWMLKVYVTDLQIERS-LRVKGDLHIGGV 39 (87)
Q Consensus 8 ~~dgSWeLsV~VtdL~~evt-LRVtGDLHIGGV 39 (87)
.|.|+.+.+|.-.+-+. ++ +-..||.|+||-
T Consensus 208 lGGGT~DvSv~~~~~~~-~evlat~gd~~lGG~ 239 (616)
T PRK05183 208 LGGGTFDISILRLSKGV-FEVLATGGDSALGGD 239 (616)
T ss_pred CCCCeEEEEEEEeeCCE-EEEEEecCCCCcCHH
Confidence 57788887775443332 33 447899999995
No 49
>PF11412 DsbC: Disulphide bond corrector protein DsbC; PDB: 1JPE_A 1JZD_C 1Z5Y_D 1VRS_A 3PFU_A 1L6P_A 2K0R_A 2K9F_B.
Probab=20.37 E-value=1.6e+02 Score=18.61 Aligned_cols=32 Identities=3% Similarity=0.038 Sum_probs=23.4
Q ss_pred cCeEEEEEEEeecCceeEEEEcCccccchhhh
Q psy14194 10 DGTWMLKVYVTDLQIERSLRVKGDLHIGGVML 41 (87)
Q Consensus 10 dgSWeLsV~VtdL~~evtLRVtGDLHIGGVML 41 (87)
+.+|.+++.-+.-...+++++.-.+||=.--+
T Consensus 8 ~~af~~s~~~~~~~l~l~~~i~~gwhlY~~~~ 39 (117)
T PF11412_consen 8 EEAFKFSAAGDTYELVLTFTIAPGWHLYSDNP 39 (117)
T ss_dssp CCCEEEEEEEETTEEEEEEEE-CTEEEECCC-
T ss_pred HHceeeeecCCCEEEEEEEEECCCcEEeccCc
Confidence 56799999555555889999999999966555
No 50
>PF15133 DUF4569: Domain of unknown function (DUF4569)
Probab=20.21 E-value=36 Score=28.00 Aligned_cols=8 Identities=75% Similarity=1.174 Sum_probs=6.7
Q ss_pred cCccccch
Q psy14194 31 KGDLHIGG 38 (87)
Q Consensus 31 tGDLHIGG 38 (87)
..||||||
T Consensus 130 YpDLhIgG 137 (306)
T PF15133_consen 130 YPDLHIGG 137 (306)
T ss_pred Cccceecc
Confidence 36999998
Done!