Query psy14194
Match_columns 87
No_of_seqs 68 out of 70
Neff 2.7
Searched_HMMs 29240
Date Fri Aug 16 21:51:31 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14194.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14194hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2kmc_A Fermitin family homolog 99.8 1.2E-21 4E-26 135.3 3.3 48 2-49 7-58 (102)
2 2lgx_A Fermitin family homolog 99.8 3.1E-22 1.1E-26 140.0 -0.5 48 2-49 14-61 (112)
3 4dbg_A Ranbp-type and C3HC4-ty 79.7 1.6 5.5E-05 28.9 3.2 44 6-49 16-62 (105)
4 3ivf_A Talin-1; FERM domain, c 78.8 1.4 4.8E-05 32.7 2.9 35 12-48 3-37 (371)
5 2f1d_A IGPD 1, imidazoleglycer 50.5 4.4 0.00015 30.3 0.7 24 24-49 58-81 (207)
6 1d2s_A SHBG, sex hormone-bindi 47.9 16 0.00055 24.1 3.1 28 5-33 80-107 (170)
7 1rhy_A IGPD, imidazole glycero 44.3 7.6 0.00026 28.9 1.1 24 24-49 56-79 (202)
8 4dwf_A HLA-B-associated transc 40.7 23 0.00079 20.7 2.7 35 15-49 6-41 (90)
9 2dzi_A Ubiquitin-like protein 36.4 24 0.00083 19.8 2.3 36 14-49 7-43 (81)
10 2ae8_A IGPD, imidazoleglycerol 35.9 9.9 0.00034 28.7 0.6 24 24-49 76-99 (221)
11 2kan_A Uncharacterized protein 35.3 26 0.00089 21.4 2.4 38 12-49 13-50 (94)
12 1wx8_A Riken cDNA 4931431F19; 35.1 31 0.0011 20.5 2.7 35 15-49 18-52 (96)
13 3dbh_I NEDD8; cell cycle, acti 34.9 27 0.00092 20.0 2.3 35 15-49 13-48 (88)
14 1yi8_B Tryptophanyl-tRNA synth 34.7 7.2 0.00025 29.8 -0.3 17 31-47 32-51 (351)
15 2w0p_A Filamin-A; alternative 32.6 31 0.0011 20.8 2.4 13 10-22 55-67 (94)
16 2ds4_A Tripartite motif protei 32.2 41 0.0014 20.3 3.0 9 10-18 74-82 (113)
17 2uyz_B Small ubiquitin-related 32.0 38 0.0013 19.1 2.6 35 15-49 4-39 (79)
18 1dyk_A Laminin alpha 2 chain; 31.8 36 0.0012 24.9 3.1 26 6-32 112-137 (394)
19 3cnk_A Filamin-A; FLNA24, X-RA 30.7 39 0.0014 20.0 2.6 15 9-23 52-66 (89)
20 2eea_A Filamin-B; beta-sandwic 30.6 53 0.0018 20.5 3.4 29 9-38 72-101 (115)
21 3mtn_B UBA80, ubcep1, ubiquiti 29.8 37 0.0013 19.1 2.3 35 15-49 4-39 (85)
22 1t0y_A Tubulin folding cofacto 29.7 39 0.0013 21.6 2.6 38 12-49 4-43 (122)
23 3v6c_B Ubiquitin; structural g 28.2 42 0.0014 19.7 2.4 36 14-49 17-53 (91)
24 1wyw_B Ubiquitin-like protein 27.8 43 0.0015 20.3 2.5 40 10-49 17-57 (97)
25 1j8c_A Ubiquitin-like protein 27.8 36 0.0012 22.0 2.3 35 15-49 33-67 (125)
26 2dmb_A Filamin-B; beta-sandwic 27.3 49 0.0017 21.4 2.8 30 9-39 65-95 (124)
27 2klc_A Ubiquilin-1; ubiquitin- 27.3 40 0.0014 20.7 2.3 35 15-49 26-60 (101)
28 2hj8_A Interferon-induced 17 k 27.2 56 0.0019 19.2 2.9 35 15-49 5-40 (88)
29 1wx7_A Ubiquilin 3; ubiquitin- 27.0 47 0.0016 20.3 2.6 35 15-49 18-52 (106)
30 1v6e_A Cytoskeleton-associated 26.8 45 0.0016 20.1 2.4 35 15-49 8-44 (95)
31 2bwf_A Ubiquitin-like protein 26.4 51 0.0018 18.2 2.5 35 15-49 5-39 (77)
32 3phx_B Ubiquitin-like protein 26.3 47 0.0016 18.7 2.3 35 15-49 5-40 (79)
33 1y5o_A TFB1, RNA polymerase II 25.8 28 0.00096 23.9 1.5 40 37-81 56-95 (115)
34 4eew_A Large proline-rich prot 25.6 59 0.002 18.8 2.7 35 15-49 18-53 (88)
35 2dia_A Filamin-B; beta-sandwic 24.9 55 0.0019 20.3 2.6 15 9-23 64-78 (113)
36 2kjr_A CG11242; UBL, ubiquitin 24.8 53 0.0018 20.4 2.5 35 15-49 16-53 (95)
37 2kk8_A Uncharacterized protein 24.7 50 0.0017 19.7 2.3 35 15-49 11-46 (84)
38 1i6k_A TRPRS, tryptophanyl-tRN 23.8 15 0.0005 27.8 -0.3 16 30-45 10-28 (328)
39 3n3k_B Ubiquitin; hydrolase, p 23.8 33 0.0011 19.4 1.3 35 15-49 4-39 (85)
40 1wy8_A NP95-like ring finger p 23.7 55 0.0019 18.9 2.3 39 11-49 4-45 (89)
41 2di8_A Filamin-B; beta-sandwic 23.6 62 0.0021 20.4 2.7 15 9-23 62-76 (111)
42 1v86_A DNA segment, CHR 7, way 23.4 54 0.0019 19.9 2.3 38 12-49 15-52 (95)
43 1ttn_A DC-UBP, dendritic cell- 23.0 56 0.0019 20.1 2.4 35 15-49 24-59 (106)
44 2d7m_A Filamin-C; beta-sandwic 22.9 53 0.0018 20.5 2.3 13 10-22 67-79 (115)
45 1uh6_A Ubiquitin-like 5; beta- 22.6 60 0.0021 20.9 2.5 38 12-49 26-64 (100)
46 3u30_A Ubiquitin, linear DI-ub 22.4 55 0.0019 21.4 2.4 36 14-49 20-56 (172)
47 1wh3_A 59 kDa 2'-5'-oligoadeny 22.3 64 0.0022 18.4 2.4 38 10-49 5-43 (87)
48 1nzj_A Hypothetical protein YA 22.1 17 0.00059 27.1 -0.2 16 29-44 13-28 (298)
49 4gri_A Glutamate--tRNA ligase; 22.0 22 0.00076 28.4 0.4 14 31-44 34-47 (512)
50 1yqb_A Ubiquilin 3; structural 21.5 72 0.0025 19.5 2.7 35 15-49 23-57 (100)
51 4hcn_B Polyubiquitin, ubiquiti 21.4 43 0.0015 20.2 1.6 36 14-49 22-58 (98)
52 3plu_A Ubiquitin-like modifier 21.4 68 0.0023 20.7 2.6 41 9-49 16-57 (93)
53 1v05_A Filamin C; actin-bindin 21.3 76 0.0026 19.0 2.7 15 9-23 59-73 (96)
54 1wia_A Hypothetical ubiquitin- 21.3 88 0.003 18.4 3.0 32 15-46 8-40 (95)
55 2bp3_A Filamin A; structural p 21.2 78 0.0027 19.0 2.7 11 10-20 58-68 (97)
56 2g36_A Tryptophanyl-tRNA synth 21.2 16 0.00055 27.8 -0.6 20 28-47 19-41 (340)
57 1j09_A Glutamyl-tRNA synthetas 20.2 25 0.00087 28.0 0.4 16 30-45 10-25 (468)
No 1
>2kmc_A Fermitin family homolog 1; kindlin, cytoskeleton, integrin, N-terminal, talin, cell adhesion, cell junction, cell membrane, cell projection; NMR {Mus musculus}
Probab=99.83 E-value=1.2e-21 Score=135.33 Aligned_cols=48 Identities=46% Similarity=0.684 Sum_probs=42.5
Q ss_pred cccCceeccCeEEEEEEEeecC----ceeEEEEcCccccchhhhheeecccc
Q psy14194 2 MADGVLVGDGTWMLKVYVTDLQ----IERSLRVKGDLHIGGVMLRLVEDLVT 49 (87)
Q Consensus 2 m~~g~~~~dgSWeLsV~VtdL~----~evtLRVtGDLHIGGVMLKLVE~l~i 49 (87)
|.+++.|+|+||||+|+|+|++ +++++||+||+|||||||||||++++
T Consensus 7 m~~sg~~~d~SWeL~V~V~d~~~~~~~~~~lrV~GdlHIGGvmlklVEki~i 58 (102)
T 2kmc_A 7 MLSSGDLTSASWELVVRVDHANGEQQTEITLRVSGDLHIGGVMLKLVEQMNI 58 (102)
T ss_dssp SSSSSCCSCCCEEEEEEEECTTSSCEEEEEEEECSCCBHHHHHHHHHHHHCC
T ss_pred EeccCccccCcEEEEEEEecCCcccCccEEEEEeeccccchhhhhhhhhccc
Confidence 4444558899999999999955 77999999999999999999999886
No 2
>2lgx_A Fermitin family homolog 2; kindlin, membrane, integrin activation, cell adhesion; NMR {Homo sapiens}
Probab=99.83 E-value=3.1e-22 Score=140.03 Aligned_cols=48 Identities=50% Similarity=0.759 Sum_probs=43.7
Q ss_pred cccCceeccCeEEEEEEEeecCceeEEEEcCccccchhhhheeecccc
Q psy14194 2 MADGVLVGDGTWMLKVYVTDLQIERSLRVKGDLHIGGVMLRLVEDLVT 49 (87)
Q Consensus 2 m~~g~~~~dgSWeLsV~VtdL~~evtLRVtGDLHIGGVMLKLVE~l~i 49 (87)
|.++++|+|+||||+|+|+|+++++++||+||+|||||||||||++++
T Consensus 14 m~~~g~~~d~SWeL~V~V~d~~~~~~lrV~GdlHIGGvmLkLVE~i~i 61 (112)
T 2lgx_A 14 RMPDGCYADGTWELSVHVTDVNRDVTLRVTGEVHIGGVMLKLVEKLDV 61 (112)
T ss_dssp TTTTTSSSSSCCCEECCBTTTTBCCEECCCTTSCHHHHHHHHHHHCCS
T ss_pred eeccCccccCcEEEEEEEecCCccEEEEEeeccccccchhhhhhhhcc
Confidence 444445889999999999999999999999999999999999999886
No 3
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=79.72 E-value=1.6 Score=28.90 Aligned_cols=44 Identities=20% Similarity=0.109 Sum_probs=37.3
Q ss_pred ceeccCeEEEEEEEeecC---ceeEEEEcCccccchhhhheeecccc
Q psy14194 6 VLVGDGTWMLKVYVTDLQ---IERSLRVKGDLHIGGVMLRLVEDLVT 49 (87)
Q Consensus 6 ~~~~dgSWeLsV~VtdL~---~evtLRVtGDLHIGGVMLKLVE~l~i 49 (87)
..|-++.-.|.|+|.|+. ..+++.|.++--|+.+.-++-|+.++
T Consensus 16 ~~~~~~~i~l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~Gi 62 (105)
T 4dbg_A 16 EVSPTQDIRLWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGF 62 (105)
T ss_dssp ----CCCEEEEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHHHCC
T ss_pred CcCCCCcEEEEEEEEccCCCCceEEEEECCcChHHHHHHHHHHHhCC
Confidence 346789999999999997 78999999999999999999988776
No 4
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=78.77 E-value=1.4 Score=32.69 Aligned_cols=35 Identities=9% Similarity=0.159 Sum_probs=31.1
Q ss_pred eEEEEEEEeecCceeEEEEcCccccchhhhheeeccc
Q psy14194 12 TWMLKVYVTDLQIERSLRVKGDLHIGGVMLRLVEDLV 48 (87)
Q Consensus 12 SWeLsV~VtdL~~evtLRVtGDLHIGGVMLKLVE~l~ 48 (87)
+=.|.|.+- +.-+|++..++.+|++++.++.|++.
T Consensus 3 ~~~~~~~~~--~~~~~~~f~~~~~v~~~~~~i~e~~~ 37 (371)
T 3ivf_A 3 ALSLKISIG--NVVKTMQFEPSTMVYDACRMIRERIP 37 (371)
T ss_dssp CEEEEEEET--TEEEEEEECTTCBHHHHHHHHHTTCG
T ss_pred cEEEEEEec--ceeEEEEECCCCCHHHHHHHHHHhcc
Confidence 456788886 88899999999999999999999986
No 5
>2f1d_A IGPD 1, imidazoleglycerol-phosphate dehydratase 1; herbicide, manganese, histidine biosynthesis, lyase; 3.00A {Arabidopsis thaliana} SCOP: d.14.1.9 d.14.1.9
Probab=50.47 E-value=4.4 Score=30.30 Aligned_cols=24 Identities=29% Similarity=0.508 Sum_probs=19.8
Q ss_pred ceeEEEEcCccccchhhhheeecccc
Q psy14194 24 IERSLRVKGDLHIGGVMLRLVEDLVT 49 (87)
Q Consensus 24 ~evtLRVtGDLHIGGVMLKLVE~l~i 49 (87)
.+.+|+.+|||||..+ +.||.+.|
T Consensus 58 ~dL~v~a~GDl~iD~H--HtvEDvgI 81 (207)
T 2f1d_A 58 FDVHVRATGDVHIDDH--HTNEDIAL 81 (207)
T ss_dssp CEEEEEEECCTTTCSH--HHHHHHHH
T ss_pred CceEEEEecCccccCC--Cchhhhhh
Confidence 7899999999999874 77776655
No 6
>1d2s_A SHBG, sex hormone-binding globulin; steroid transport, laminin G-like domain, jellyroll, androgen binding protein (ABP); HET: DHT; 1.55A {Homo sapiens} SCOP: b.29.1.4 PDB: 1kdk_A* 1kdm_A*
Probab=47.88 E-value=16 Score=24.11 Aligned_cols=28 Identities=32% Similarity=0.445 Sum_probs=17.9
Q ss_pred CceeccCeEEEEEEEeecCceeEEEEcCc
Q psy14194 5 GVLVGDGTWMLKVYVTDLQIERSLRVKGD 33 (87)
Q Consensus 5 g~~~~dgSWeLsV~VtdL~~evtLRVtGD 33 (87)
+..+.||.|- +|.|...+...+|.|-|+
T Consensus 80 ~~~vnDG~WH-~V~v~~~~~~~~L~VD~~ 107 (170)
T 1d2s_A 80 GPRLDDGRWH-QVEVKMEGDSVLLEVDGE 107 (170)
T ss_dssp SCCCCSSSCE-EEEEEEETTEEEEEETTE
T ss_pred CCccCCCCCE-EEEEEEeCCEEEEEECCe
Confidence 3446799996 455555556667777664
No 7
>1rhy_A IGPD, imidazole glycerol phosphate dehydratase; dehydratases, histidine biosynthesis, LEFT-handed B-A-B CROS motif, gene duplication; 2.30A {Filobasidiella neoformans} SCOP: d.14.1.9 d.14.1.9
Probab=44.27 E-value=7.6 Score=28.88 Aligned_cols=24 Identities=38% Similarity=0.529 Sum_probs=14.8
Q ss_pred ceeEEEEcCccccchhhhheeecccc
Q psy14194 24 IERSLRVKGDLHIGGVMLRLVEDLVT 49 (87)
Q Consensus 24 ~evtLRVtGDLHIGGVMLKLVE~l~i 49 (87)
.+.+|+.+|||||-. .+.||.+.|
T Consensus 56 ~dL~v~a~GDl~iD~--HHtvED~gI 79 (202)
T 1rhy_A 56 MSLQLQCKGDLHIDD--HHTAEDCAL 79 (202)
T ss_dssp CEEEEEEESCC--------CCHHHHH
T ss_pred CceEEEEecCCcccc--CccHHHhhh
Confidence 778999999999986 567776655
No 8
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=40.75 E-value=23 Score=20.67 Aligned_cols=35 Identities=17% Similarity=0.285 Sum_probs=28.8
Q ss_pred EEEEEeecC-ceeEEEEcCccccchhhhheeecccc
Q psy14194 15 LKVYVTDLQ-IERSLRVKGDLHIGGVMLRLVEDLVT 49 (87)
Q Consensus 15 LsV~VtdL~-~evtLRVtGDLHIGGVMLKLVE~l~i 49 (87)
..|+|..++ ..+++.|..+.-|+.++-++-++.++
T Consensus 6 m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi 41 (90)
T 4dwf_A 6 LEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSI 41 (90)
T ss_dssp EEEEEEETTCCEEEEEEETTCBHHHHHHHHHHHHTC
T ss_pred EEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCC
Confidence 457888774 78899999999999999998776554
No 9
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=36.38 E-value=24 Score=19.79 Aligned_cols=36 Identities=28% Similarity=0.233 Sum_probs=28.0
Q ss_pred EEEEEEeecC-ceeEEEEcCccccchhhhheeecccc
Q psy14194 14 MLKVYVTDLQ-IERSLRVKGDLHIGGVMLRLVEDLVT 49 (87)
Q Consensus 14 eLsV~VtdL~-~evtLRVtGDLHIGGVMLKLVE~l~i 49 (87)
...|+|..++ ..+++.|..+.-|+.+.-++-++.++
T Consensus 7 ~m~i~vk~~~g~~~~~~v~~~~tV~~LK~~i~~~~~i 43 (81)
T 2dzi_A 7 GMQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNV 43 (81)
T ss_dssp SEEEEEEETTSCEEEEEECSSCBHHHHHHHHHHHTCC
T ss_pred cEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCc
Confidence 3456666554 67889999999999999988776665
No 10
>2ae8_A IGPD, imidazoleglycerol-phosphate dehydratase; beta-alpha-beta sandwich, duplication of A half-domain; 2.01A {Staphylococcus aureus subsp} SCOP: d.14.1.9 d.14.1.9
Probab=35.90 E-value=9.9 Score=28.73 Aligned_cols=24 Identities=17% Similarity=0.446 Sum_probs=14.8
Q ss_pred ceeEEEEcCccccchhhhheeecccc
Q psy14194 24 IERSLRVKGDLHIGGVMLRLVEDLVT 49 (87)
Q Consensus 24 ~evtLRVtGDLHIGGVMLKLVE~l~i 49 (87)
.+.+|+.+|||||.. .+.||.+.|
T Consensus 76 ~dL~v~a~GDl~iD~--HHTvEDvgI 99 (221)
T 2ae8_A 76 LSLNIEAQGDIDVDD--HHVTEDIGI 99 (221)
T ss_dssp CEEEEEEECC----H--HHHHHHHHH
T ss_pred CceEEEEeeCCcccC--CccHHHHHh
Confidence 678999999999986 456665554
No 11
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=35.31 E-value=26 Score=21.39 Aligned_cols=38 Identities=11% Similarity=-0.046 Sum_probs=31.3
Q ss_pred eEEEEEEEeecCceeEEEEcCccccchhhhheeecccc
Q psy14194 12 TWMLKVYVTDLQIERSLRVKGDLHIGGVMLRLVEDLVT 49 (87)
Q Consensus 12 SWeLsV~VtdL~~evtLRVtGDLHIGGVMLKLVE~l~i 49 (87)
..+..|+|..++..+++.|..+.-|+.+.-+|-++.++
T Consensus 13 ~~~~~I~Vk~~~~~~~l~v~~~~TV~~LK~~I~~~~gi 50 (94)
T 2kan_A 13 VRKIHVTVKFPSKQFTVEVDRTETVSSLKDKIHIVENT 50 (94)
T ss_dssp SCCEEEEEECSSCEEEEEECTTCBHHHHHHHHHHHSSS
T ss_pred CCCEEEEEEcCCcEEEEEECCCCcHHHHHHHHHHHHCc
Confidence 44566888888768899999999999999999877655
No 12
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=35.09 E-value=31 Score=20.48 Aligned_cols=35 Identities=11% Similarity=0.064 Sum_probs=29.0
Q ss_pred EEEEEeecCceeEEEEcCccccchhhhheeecccc
Q psy14194 15 LKVYVTDLQIERSLRVKGDLHIGGVMLRLVEDLVT 49 (87)
Q Consensus 15 LsV~VtdL~~evtLRVtGDLHIGGVMLKLVE~l~i 49 (87)
..|+|..++..+++.|..+.-|+.+.-+|-++.++
T Consensus 18 m~i~Vk~~g~~~~~~v~~~~TV~~LK~~I~~~~gi 52 (96)
T 1wx8_A 18 IRVSVKTPQDCHEFFLAENSNVRRFKKQISKYLHC 52 (96)
T ss_dssp EEEEEECSSSEEEEEEETTCCHHHHHHHHHHHTCS
T ss_pred EEEEEEECCeEEEEEECCCCCHHHHHHHHHHHhCC
Confidence 45667667888999999999999999998877665
No 13
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=34.86 E-value=27 Score=19.99 Aligned_cols=35 Identities=14% Similarity=0.121 Sum_probs=29.0
Q ss_pred EEEEEeecC-ceeEEEEcCccccchhhhheeecccc
Q psy14194 15 LKVYVTDLQ-IERSLRVKGDLHIGGVMLRLVEDLVT 49 (87)
Q Consensus 15 LsV~VtdL~-~evtLRVtGDLHIGGVMLKLVE~l~i 49 (87)
..|+|..++ ..+++.|..+.-|+.++-++-++.++
T Consensus 13 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi 48 (88)
T 3dbh_I 13 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGI 48 (88)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCC
T ss_pred EEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCc
Confidence 557777765 77899999999999999999877665
No 14
>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A*
Probab=34.71 E-value=7.2 Score=29.81 Aligned_cols=17 Identities=35% Similarity=0.567 Sum_probs=12.7
Q ss_pred cCccccc---hhhhheeecc
Q psy14194 31 KGDLHIG---GVMLRLVEDL 47 (87)
Q Consensus 31 tGDLHIG---GVMLKLVE~l 47 (87)
||+|||| |.|.++++-+
T Consensus 32 TG~lHLGn~~g~l~~~~~lQ 51 (351)
T 1yi8_B 32 TGALHLGHLAGSLQNRVRLQ 51 (351)
T ss_dssp SSCCBHHHHHHTHHHHHHHT
T ss_pred CCCccHHHHHHHHHHHHHHH
Confidence 8999999 5676776433
No 15
>2w0p_A Filamin-A; alternative splicing, cytoskeleton/complex, phosphoprotein, disease mutation, immunoglobulin like, zinc, complex; 1.90A {Homo sapiens} SCOP: b.1.18.10 PDB: 2brq_A* 2jf1_A 3isw_A
Probab=32.62 E-value=31 Score=20.81 Aligned_cols=13 Identities=23% Similarity=0.291 Sum_probs=6.1
Q ss_pred cCeEEEEEEEeec
Q psy14194 10 DGTWMLKVYVTDL 22 (87)
Q Consensus 10 dgSWeLsV~VtdL 22 (87)
||+|..+-..+..
T Consensus 55 dGty~v~Y~p~~~ 67 (94)
T 2w0p_A 55 DGSCGVAYVVQEP 67 (94)
T ss_dssp TSCEEEEEECSSC
T ss_pred CCEEEEEEEECCC
Confidence 4555544444443
No 16
>2ds4_A Tripartite motif protein 45; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=32.21 E-value=41 Score=20.29 Aligned_cols=9 Identities=33% Similarity=0.652 Sum_probs=3.5
Q ss_pred cCeEEEEEE
Q psy14194 10 DGTWMLKVY 18 (87)
Q Consensus 10 dgSWeLsV~ 18 (87)
||+|+.+-.
T Consensus 74 dGty~v~y~ 82 (113)
T 2ds4_A 74 DGTYYISYT 82 (113)
T ss_dssp SSEEEEEEE
T ss_pred CCEEEEEEE
Confidence 344443333
No 17
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=31.98 E-value=38 Score=19.14 Aligned_cols=35 Identities=17% Similarity=0.136 Sum_probs=29.4
Q ss_pred EEEEEeecC-ceeEEEEcCccccchhhhheeecccc
Q psy14194 15 LKVYVTDLQ-IERSLRVKGDLHIGGVMLRLVEDLVT 49 (87)
Q Consensus 15 LsV~VtdL~-~evtLRVtGDLHIGGVMLKLVE~l~i 49 (87)
..|+|..++ ..+++.|..+--|+.++-++-++.++
T Consensus 4 m~i~vk~~~g~~~~~~v~~~~tv~~lk~~i~~~~gi 39 (79)
T 2uyz_B 4 IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGV 39 (79)
T ss_dssp EEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTC
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCC
Confidence 568888775 78899999999999999998877665
No 18
>1dyk_A Laminin alpha 2 chain; metal binding protein; 2.0A {Mus musculus} SCOP: b.29.1.4 b.29.1.4 PDB: 1okq_A 1qu0_A
Probab=31.82 E-value=36 Score=24.90 Aligned_cols=26 Identities=27% Similarity=0.526 Sum_probs=16.6
Q ss_pred ceeccCeEEEEEEEeecCceeEEEEcC
Q psy14194 6 VLVGDGTWMLKVYVTDLQIERSLRVKG 32 (87)
Q Consensus 6 ~~~~dgSWeLsV~VtdL~~evtLRVtG 32 (87)
..+.||.|- .|.|+..+...+|.|.|
T Consensus 112 ~~~~Dg~WH-~V~v~r~~~~~~L~VD~ 137 (394)
T 1dyk_A 112 TKINDGQWH-KIKIVRVKQEGILYVDD 137 (394)
T ss_dssp SCCCSSSCE-EEEEEEETTEEEEEETT
T ss_pred cccCCCCEE-EEEEEEeCCEEEEEEcC
Confidence 346789996 46666666666666643
No 19
>3cnk_A Filamin-A; FLNA24, X-RAY crystalography, homodimer, acetylation, actin-binding, cytoplasm, cytoskeleton, disease mutation, phosphoprotein; 1.65A {Homo sapiens}
Probab=30.74 E-value=39 Score=20.00 Aligned_cols=15 Identities=13% Similarity=0.264 Sum_probs=8.1
Q ss_pred ccCeEEEEEEEeecC
Q psy14194 9 GDGTWMLKVYVTDLQ 23 (87)
Q Consensus 9 ~dgSWeLsV~VtdL~ 23 (87)
+||+|+.+-...+.+
T Consensus 52 ~dGty~v~Y~p~~~G 66 (89)
T 3cnk_A 52 GSRLYSVSYLLKDKG 66 (89)
T ss_dssp ETTEEEEEEECCSCE
T ss_pred CCCEEEEEEEECCCc
Confidence 456666555555444
No 20
>2eea_A Filamin-B; beta-sandwich, immunoglobulin-like fold, interaction with GP1BA, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.59 E-value=53 Score=20.52 Aligned_cols=29 Identities=24% Similarity=0.203 Sum_probs=15.1
Q ss_pred ccCeEEEEEEEeecC-ceeEEEEcCccccch
Q psy14194 9 GDGTWMLKVYVTDLQ-IERSLRVKGDLHIGG 38 (87)
Q Consensus 9 ~dgSWeLsV~VtdL~-~evtLRVtGDLHIGG 38 (87)
+||+|+.+-..+..+ -.+.+++.| .||.|
T Consensus 72 ~dGty~v~Y~p~~~G~y~I~V~~~g-~~I~g 101 (115)
T 2eea_A 72 KDGTCTVTYLPTLPGDYSILVKYND-KHIPG 101 (115)
T ss_dssp SSSEEEEEEECSSCSCEEEEEEESS-SBCTT
T ss_pred CCCEEEEEEEeCCCeeEEEEEEECC-EECCC
Confidence 466777666665554 334444433 35543
No 21
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=29.82 E-value=37 Score=19.09 Aligned_cols=35 Identities=17% Similarity=0.244 Sum_probs=29.1
Q ss_pred EEEEEeecC-ceeEEEEcCccccchhhhheeecccc
Q psy14194 15 LKVYVTDLQ-IERSLRVKGDLHIGGVMLRLVEDLVT 49 (87)
Q Consensus 15 LsV~VtdL~-~evtLRVtGDLHIGGVMLKLVE~l~i 49 (87)
..|+|..++ ..+++.|..+.-|+.+.-++-++.++
T Consensus 4 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i 39 (85)
T 3mtn_B 4 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 39 (85)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCC
T ss_pred EEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCc
Confidence 457788776 77899999999999999998877655
No 22
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=29.69 E-value=39 Score=21.60 Aligned_cols=38 Identities=11% Similarity=0.029 Sum_probs=31.8
Q ss_pred eEEEEEEEeecCc--eeEEEEcCccccchhhhheeecccc
Q psy14194 12 TWMLKVYVTDLQI--ERSLRVKGDLHIGGVMLRLVEDLVT 49 (87)
Q Consensus 12 SWeLsV~VtdL~~--evtLRVtGDLHIGGVMLKLVE~l~i 49 (87)
+-.++|.|+.-+. ..+++|..+.-|+.|.-||-++.++
T Consensus 4 ~~~v~l~V~~~~~~~~~e~~v~~~~TV~~lK~ki~~~~Gi 43 (122)
T 1t0y_A 4 TEVYDLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGT 43 (122)
T ss_dssp CCEEEEEEEESSCCSCEEEEEETTSBHHHHHHHHHHHHCC
T ss_pred CCEEEEEEEECCCCccEEEEeCCCCcHHHHHHHHHHHhCC
Confidence 3468888887665 6899999999999999999887775
No 23
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=28.15 E-value=42 Score=19.74 Aligned_cols=36 Identities=17% Similarity=0.246 Sum_probs=29.7
Q ss_pred EEEEEEeecC-ceeEEEEcCccccchhhhheeecccc
Q psy14194 14 MLKVYVTDLQ-IERSLRVKGDLHIGGVMLRLVEDLVT 49 (87)
Q Consensus 14 eLsV~VtdL~-~evtLRVtGDLHIGGVMLKLVE~l~i 49 (87)
...|+|..++ ..++++|..+.-|+.++-++-++.++
T Consensus 17 ~m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gi 53 (91)
T 3v6c_B 17 SMQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEGI 53 (91)
T ss_dssp SEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCC
T ss_pred eEEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCC
Confidence 3567887765 77899999999999999999877665
No 24
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=27.81 E-value=43 Score=20.27 Aligned_cols=40 Identities=15% Similarity=0.071 Sum_probs=32.5
Q ss_pred cCeEEEEEEEeecC-ceeEEEEcCccccchhhhheeecccc
Q psy14194 10 DGTWMLKVYVTDLQ-IERSLRVKGDLHIGGVMLRLVEDLVT 49 (87)
Q Consensus 10 dgSWeLsV~VtdL~-~evtLRVtGDLHIGGVMLKLVE~l~i 49 (87)
+.+-...|+|..++ ..+++.|..+--|+.++-++-++.++
T Consensus 17 ~~~~~m~I~Vk~~~g~~~~l~v~~~~tv~~lK~~i~~~~gi 57 (97)
T 1wyw_B 17 KEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGV 57 (97)
T ss_dssp --CCEEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTC
T ss_pred CCCCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCC
Confidence 34566889998875 78899999999999999998887665
No 25
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=27.81 E-value=36 Score=22.01 Aligned_cols=35 Identities=11% Similarity=0.131 Sum_probs=28.6
Q ss_pred EEEEEeecCceeEEEEcCccccchhhhheeecccc
Q psy14194 15 LKVYVTDLQIERSLRVKGDLHIGGVMLRLVEDLVT 49 (87)
Q Consensus 15 LsV~VtdL~~evtLRVtGDLHIGGVMLKLVE~l~i 49 (87)
..|+|..++..+++.|..+.-|+.++-+|-++.++
T Consensus 33 m~I~Vk~~g~~~~l~v~~~~TV~~LK~~I~~~~gi 67 (125)
T 1j8c_A 33 IKVTVKTPKEKEEFAVPENSSVQQFKEAISKRFKS 67 (125)
T ss_dssp EEEEEECSSCEEEEEECTTCCHHHHHHHHHHHHCS
T ss_pred EEEEEEeCCeEEEEEECCCCcHHHHHHHHHHHHCc
Confidence 44666666888999999999999999998876654
No 26
>2dmb_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10
Probab=27.34 E-value=49 Score=21.37 Aligned_cols=30 Identities=20% Similarity=0.198 Sum_probs=17.6
Q ss_pred ccCeEEEEEEEeecC-ceeEEEEcCccccchh
Q psy14194 9 GDGTWMLKVYVTDLQ-IERSLRVKGDLHIGGV 39 (87)
Q Consensus 9 ~dgSWeLsV~VtdL~-~evtLRVtGDLHIGGV 39 (87)
+||+|+.+-...+.+ ..+.|++.| .||.|=
T Consensus 65 ~dGty~V~Y~p~~~G~y~I~V~~~g-~~I~gS 95 (124)
T 2dmb_A 65 EDGTYDIFYTAAKPGTYVIYVRFGG-VDIPNS 95 (124)
T ss_dssp TTSCEEEEEECSSCEEEEEEEEESS-CBCTTC
T ss_pred CCCEEEEEEEcCCCEEEEEEEEECC-EECCCC
Confidence 467777666666554 445555544 477653
No 27
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=27.31 E-value=40 Score=20.68 Aligned_cols=35 Identities=11% Similarity=0.140 Sum_probs=28.0
Q ss_pred EEEEEeecCceeEEEEcCccccchhhhheeecccc
Q psy14194 15 LKVYVTDLQIERSLRVKGDLHIGGVMLRLVEDLVT 49 (87)
Q Consensus 15 LsV~VtdL~~evtLRVtGDLHIGGVMLKLVE~l~i 49 (87)
..|+|..++..+++.|..+.-|+.+.-+|-++.++
T Consensus 26 m~I~Vk~~g~~~~l~v~~~~TV~~LK~~I~~~~gi 60 (101)
T 2klc_A 26 MKVTVKTPKEKEEFAVPENSSVQQFKEEISKRFKS 60 (101)
T ss_dssp EEEEEECSSCEEEEEECSCCCHHHHHHHHHHHHTC
T ss_pred EEEEEEeCCcEEEEEECCCCCHHHHHHHHHHHHCc
Confidence 44666666788899999999999999988776554
No 28
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=27.19 E-value=56 Score=19.19 Aligned_cols=35 Identities=9% Similarity=0.005 Sum_probs=28.5
Q ss_pred EEEEEeec-CceeEEEEcCccccchhhhheeecccc
Q psy14194 15 LKVYVTDL-QIERSLRVKGDLHIGGVMLRLVEDLVT 49 (87)
Q Consensus 15 LsV~VtdL-~~evtLRVtGDLHIGGVMLKLVE~l~i 49 (87)
..|+|..+ +..+++.|..+.-|+.+.-++-++.++
T Consensus 5 m~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gi 40 (88)
T 2hj8_A 5 LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGV 40 (88)
T ss_dssp EEEEEEETTSCEEEEEEESSSBHHHHHHHHHHHTCS
T ss_pred EEEEEECCCCCEEEEEECCCCcHHHHHHHHHHHhCC
Confidence 45777776 478899999999999999998776654
No 29
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=26.99 E-value=47 Score=20.29 Aligned_cols=35 Identities=14% Similarity=0.156 Sum_probs=27.5
Q ss_pred EEEEEeecCceeEEEEcCccccchhhhheeecccc
Q psy14194 15 LKVYVTDLQIERSLRVKGDLHIGGVMLRLVEDLVT 49 (87)
Q Consensus 15 LsV~VtdL~~evtLRVtGDLHIGGVMLKLVE~l~i 49 (87)
..|+|..++..+++.|..+.-|+.++-+|-++.++
T Consensus 18 m~I~Vk~~~g~~~l~v~~~~TV~~LK~~I~~~~gi 52 (106)
T 1wx7_A 18 IKVTVKTPKDKEDFSVTDTCTIQQLKEEISQRFKA 52 (106)
T ss_dssp EEEEEECSSCEEEEEEETTCCHHHHHHHHHHHHTC
T ss_pred EEEEEEeCCCcEEEEECCCCcHHHHHHHHHHHHCc
Confidence 45677766655799999999999999988776554
No 30
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=26.77 E-value=45 Score=20.09 Aligned_cols=35 Identities=14% Similarity=0.123 Sum_probs=29.7
Q ss_pred EEEEEeecCc--eeEEEEcCccccchhhhheeecccc
Q psy14194 15 LKVYVTDLQI--ERSLRVKGDLHIGGVMLRLVEDLVT 49 (87)
Q Consensus 15 LsV~VtdL~~--evtLRVtGDLHIGGVMLKLVE~l~i 49 (87)
++|.|+.-+. ..+++|..+.-|+.+.-||-++.++
T Consensus 8 v~l~I~~~~~~~~~~~~v~~~~TV~~lK~ki~~~~gi 44 (95)
T 1v6e_A 8 VMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGS 44 (95)
T ss_dssp EEEEEEETTSSSCEEEEECTTSBHHHHHHHHHHHTCS
T ss_pred EEEEEEECCCCeeEEEEcCccCHHHHHHHHHHHHHCC
Confidence 6777876665 6899999999999999999887776
No 31
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=26.43 E-value=51 Score=18.18 Aligned_cols=35 Identities=9% Similarity=-0.044 Sum_probs=27.7
Q ss_pred EEEEEeecCceeEEEEcCccccchhhhheeecccc
Q psy14194 15 LKVYVTDLQIERSLRVKGDLHIGGVMLRLVEDLVT 49 (87)
Q Consensus 15 LsV~VtdL~~evtLRVtGDLHIGGVMLKLVE~l~i 49 (87)
..|+|..-+..+++.|..+.-|+.+.-++-++.++
T Consensus 5 m~i~vk~~g~~~~~~v~~~~tV~~LK~~i~~~~~i 39 (77)
T 2bwf_A 5 LNIHIKSGQDKWEVNVAPESTVLQFKEAINKANGI 39 (77)
T ss_dssp EEEEEEETTEEEEEEECTTCBHHHHHHHHHHHHCC
T ss_pred EEEEEEECCEEEEEEECCCCcHHHHHHHHHHHhCC
Confidence 45666665577899999999999999988776654
No 32
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=26.35 E-value=47 Score=18.75 Aligned_cols=35 Identities=9% Similarity=0.029 Sum_probs=28.5
Q ss_pred EEEEEeecC-ceeEEEEcCccccchhhhheeecccc
Q psy14194 15 LKVYVTDLQ-IERSLRVKGDLHIGGVMLRLVEDLVT 49 (87)
Q Consensus 15 LsV~VtdL~-~evtLRVtGDLHIGGVMLKLVE~l~i 49 (87)
..|+|..++ ..+++.|..+.-|+.+.-++-++.++
T Consensus 5 m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi 40 (79)
T 3phx_B 5 LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGV 40 (79)
T ss_dssp EEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTC
T ss_pred EEEEEEeCCCCEEEEEECCcChHHHHHHHHHhhcCC
Confidence 457787765 77899999999999999999766554
No 33
>1y5o_A TFB1, RNA polymerase II transcription factor B 73 kDa subunit; TFIIH, PH domain, phosphoinositides, VP16; NMR {Saccharomyces cerevisiae} SCOP: b.55.1.9 PDB: 2gs0_A 2k2u_A 2l2i_A 2lox_A*
Probab=25.76 E-value=28 Score=23.91 Aligned_cols=40 Identities=20% Similarity=0.229 Sum_probs=20.8
Q ss_pred chhhhheeecccceeecCCCccCCCCcceeecCCCceeeeeeeec
Q psy14194 37 GGVMLRLVEDLVTHMIPSSYSFGSARPIATHLAPNSYSFALTRRS 81 (87)
Q Consensus 37 GGVMLKLVE~l~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 81 (87)
.-|||||+++.+- .+.-+...--+.--+|..|-|.+|-|+
T Consensus 56 ~KvmLKI~~k~~~-----~~~~~~~~~~~~~~~p~~~~F~FtnR~ 95 (115)
T 1y5o_A 56 EKMMLRLIGKVDE-----SKKRKDNEGNEVVPKPQRHMFSFNNRT 95 (115)
T ss_dssp SSEEEEEEECSCC-----SSSCCCCSSCCSSCCCEEEEEEESCHH
T ss_pred CceEEEEEEeccc-----cccccCCCcCCCCCCcceEEEEeCCHH
Confidence 5699999999532 110000000012234556888888664
No 34
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=25.57 E-value=59 Score=18.76 Aligned_cols=35 Identities=17% Similarity=0.285 Sum_probs=28.7
Q ss_pred EEEEEeecC-ceeEEEEcCccccchhhhheeecccc
Q psy14194 15 LKVYVTDLQ-IERSLRVKGDLHIGGVMLRLVEDLVT 49 (87)
Q Consensus 15 LsV~VtdL~-~evtLRVtGDLHIGGVMLKLVE~l~i 49 (87)
..|+|..++ ..+++.|..+.-|+.+.-++-++.++
T Consensus 18 m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi 53 (88)
T 4eew_A 18 LEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSI 53 (88)
T ss_dssp EEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHHTC
T ss_pred EEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCC
Confidence 557777774 77899999999999999999776554
No 35
>2dia_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10
Probab=24.86 E-value=55 Score=20.34 Aligned_cols=15 Identities=20% Similarity=0.235 Sum_probs=8.0
Q ss_pred ccCeEEEEEEEeecC
Q psy14194 9 GDGTWMLKVYVTDLQ 23 (87)
Q Consensus 9 ~dgSWeLsV~VtdL~ 23 (87)
+||+|..+-.....+
T Consensus 64 ~dGty~v~Y~p~~~G 78 (113)
T 2dia_A 64 KDGTYAVTYVPLTAG 78 (113)
T ss_dssp TTSEEEEEEECSSCE
T ss_pred CCCEEEEEEEeCCCc
Confidence 456666555554443
No 36
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=24.79 E-value=53 Score=20.43 Aligned_cols=35 Identities=17% Similarity=0.208 Sum_probs=27.8
Q ss_pred EEEEEeecC---ceeEEEEcCccccchhhhheeecccc
Q psy14194 15 LKVYVTDLQ---IERSLRVKGDLHIGGVMLRLVEDLVT 49 (87)
Q Consensus 15 LsV~VtdL~---~evtLRVtGDLHIGGVMLKLVE~l~i 49 (87)
++|.|+.-+ ...+++|..+.-|+.|.-||-++.++
T Consensus 16 v~l~It~s~~~~~~~~~~v~~~~TV~~LK~kI~~~~Gi 53 (95)
T 2kjr_A 16 IKVNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEILTGG 53 (95)
T ss_dssp EEEEEEESSCSCEEEEEEEETTCBHHHHHHHHHHHHCS
T ss_pred EEEEEEECCCCceEEEEEeCccCHHHHHHHHHHHHHCc
Confidence 455566433 36899999999999999999888776
No 37
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=24.74 E-value=50 Score=19.67 Aligned_cols=35 Identities=17% Similarity=0.071 Sum_probs=30.0
Q ss_pred EEEEEeecC-ceeEEEEcCccccchhhhheeecccc
Q psy14194 15 LKVYVTDLQ-IERSLRVKGDLHIGGVMLRLVEDLVT 49 (87)
Q Consensus 15 LsV~VtdL~-~evtLRVtGDLHIGGVMLKLVE~l~i 49 (87)
..|+|..++ ..+++.|..+.-|+.+.-+|-++.++
T Consensus 11 ~~i~vk~l~g~~~~l~v~~~~TV~~LK~~I~~~~gi 46 (84)
T 2kk8_A 11 MKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQHI 46 (84)
T ss_dssp EEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHTC
T ss_pred eEEEEEecCCcEEEEEECCCChHHHHHHHHHHHHCc
Confidence 568888876 78899999999999999999887665
No 38
>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS, induced FIT, ligase; HET: TYM; 1.72A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A* 1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A* 1d2r_A 3u1v_A
Probab=23.82 E-value=15 Score=27.76 Aligned_cols=16 Identities=31% Similarity=0.557 Sum_probs=11.6
Q ss_pred EcCccccch---hhhheee
Q psy14194 30 VKGDLHIGG---VMLRLVE 45 (87)
Q Consensus 30 VtGDLHIGG---VMLKLVE 45 (87)
=||+||||- .|.++++
T Consensus 10 PTG~lHlGn~vg~l~~~~~ 28 (328)
T 1i6k_A 10 PSGVITIGNYIGALRQFVE 28 (328)
T ss_dssp CCSCCBHHHHHHTHHHHHH
T ss_pred CCCcccHHHHHHHHHHHHH
Confidence 379999995 5556663
No 39
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=23.78 E-value=33 Score=19.37 Aligned_cols=35 Identities=17% Similarity=0.152 Sum_probs=28.6
Q ss_pred EEEEEeecC-ceeEEEEcCccccchhhhheeecccc
Q psy14194 15 LKVYVTDLQ-IERSLRVKGDLHIGGVMLRLVEDLVT 49 (87)
Q Consensus 15 LsV~VtdL~-~evtLRVtGDLHIGGVMLKLVE~l~i 49 (87)
..|+|..++ ..+++.|..+.-|..++-++-++.++
T Consensus 4 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i 39 (85)
T 3n3k_B 4 MRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGI 39 (85)
T ss_dssp CEEEEECGGGCEEEEECCTTCBHHHHHHHHHHHHCC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCC
Confidence 457777766 77899999999999999998876655
No 40
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=23.67 E-value=55 Score=18.86 Aligned_cols=39 Identities=13% Similarity=0.077 Sum_probs=30.7
Q ss_pred CeEEEEEEEeecC--ceeEE-EEcCccccchhhhheeecccc
Q psy14194 11 GTWMLKVYVTDLQ--IERSL-RVKGDLHIGGVMLRLVEDLVT 49 (87)
Q Consensus 11 gSWeLsV~VtdL~--~evtL-RVtGDLHIGGVMLKLVE~l~i 49 (87)
++.+..|+|..++ ..+++ .|..+.-|+.+.-++-++.++
T Consensus 4 ~~~~m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~~~gi 45 (89)
T 1wy8_A 4 GSSGMWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDV 45 (89)
T ss_dssp CSSCEEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSCC
T ss_pred CCCcEEEEEEECCCCceEEEEecCCCCCHHHHHHHHHHHHCc
Confidence 4566778888774 47899 599999999999998776554
No 41
>2di8_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10
Probab=23.61 E-value=62 Score=20.35 Aligned_cols=15 Identities=27% Similarity=0.246 Sum_probs=7.6
Q ss_pred ccCeEEEEEEEeecC
Q psy14194 9 GDGTWMLKVYVTDLQ 23 (87)
Q Consensus 9 ~dgSWeLsV~VtdL~ 23 (87)
+||+|+.+-..+..+
T Consensus 62 ~dGty~v~Y~p~~~G 76 (111)
T 2di8_A 62 EDGTCKVSYFPTVPG 76 (111)
T ss_dssp TTSCEEEEECCCSCS
T ss_pred CCCEEEEEEEeCCCe
Confidence 455555555444443
No 42
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=23.38 E-value=54 Score=19.86 Aligned_cols=38 Identities=5% Similarity=-0.074 Sum_probs=30.8
Q ss_pred eEEEEEEEeecCceeEEEEcCccccchhhhheeecccc
Q psy14194 12 TWMLKVYVTDLQIERSLRVKGDLHIGGVMLRLVEDLVT 49 (87)
Q Consensus 12 SWeLsV~VtdL~~evtLRVtGDLHIGGVMLKLVE~l~i 49 (87)
.-++.|+|..-+...+|.|..+.-|+.+.-+|-++.++
T Consensus 15 ~~~~~i~Vk~~g~~~~i~v~~~~TV~~LK~~I~~~tgi 52 (95)
T 1v86_A 15 KELVDLKIIWNKTKHDVKVPLDSTGSELKQKIHSITGL 52 (95)
T ss_dssp CCCEEEEEEETTEEEEEEECTTSBHHHHHHHHHHHHCS
T ss_pred CceEEEEEEECCEEEEEEECCCCcHHHHHHHHHHHHCc
Confidence 34566777765678899999999999999999887765
No 43
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=23.00 E-value=56 Score=20.05 Aligned_cols=35 Identities=11% Similarity=-0.073 Sum_probs=28.6
Q ss_pred EEEEEeec-CceeEEEEcCccccchhhhheeecccc
Q psy14194 15 LKVYVTDL-QIERSLRVKGDLHIGGVMLRLVEDLVT 49 (87)
Q Consensus 15 LsV~VtdL-~~evtLRVtGDLHIGGVMLKLVE~l~i 49 (87)
..|+|..+ +..+++.|..+.-|+.++-+|-++.++
T Consensus 24 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gi 59 (106)
T 1ttn_A 24 CQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGV 59 (106)
T ss_dssp EEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTCC
T ss_pred EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHHCc
Confidence 55777765 477899999999999999999776665
No 44
>2d7m_A Filamin-C; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10
Probab=22.89 E-value=53 Score=20.45 Aligned_cols=13 Identities=23% Similarity=0.289 Sum_probs=5.9
Q ss_pred cCeEEEEEEEeec
Q psy14194 10 DGTWMLKVYVTDL 22 (87)
Q Consensus 10 dgSWeLsV~VtdL 22 (87)
||+|+.+-...+.
T Consensus 67 dGty~v~Y~p~~~ 79 (115)
T 2d7m_A 67 DGTYTVSYLPDMS 79 (115)
T ss_dssp SSCEEEEECCCSC
T ss_pred CCEEEEEEEeCCC
Confidence 4455544444443
No 45
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=22.63 E-value=60 Score=20.94 Aligned_cols=38 Identities=18% Similarity=0.175 Sum_probs=32.8
Q ss_pred eEEEEEEEeec-CceeEEEEcCccccchhhhheeecccc
Q psy14194 12 TWMLKVYVTDL-QIERSLRVKGDLHIGGVMLRLVEDLVT 49 (87)
Q Consensus 12 SWeLsV~VtdL-~~evtLRVtGDLHIGGVMLKLVE~l~i 49 (87)
.=...|+|.++ +..++|.|.++--|+.|.-+|-++.++
T Consensus 26 ~~mm~I~VKtl~Gk~i~lev~p~dTV~~lK~~Ia~k~Gi 64 (100)
T 1uh6_A 26 ATMIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGT 64 (100)
T ss_dssp CCEEEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHCC
T ss_pred CCeEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCC
Confidence 44588999988 588999999999999999999887766
No 46
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=22.43 E-value=55 Score=21.43 Aligned_cols=36 Identities=17% Similarity=0.225 Sum_probs=29.8
Q ss_pred EEEEEEeecC-ceeEEEEcCccccchhhhheeecccc
Q psy14194 14 MLKVYVTDLQ-IERSLRVKGDLHIGGVMLRLVEDLVT 49 (87)
Q Consensus 14 eLsV~VtdL~-~evtLRVtGDLHIGGVMLKLVE~l~i 49 (87)
+..|+|..++ ..++++|..+.-|+.++-++-++.++
T Consensus 20 ~m~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi 56 (172)
T 3u30_A 20 HMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 56 (172)
T ss_dssp CEEEEEEETTTEEEEEEECTTCBHHHHHHHHHHHHCC
T ss_pred cEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCc
Confidence 3567888776 77899999999999999999876665
No 47
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=22.27 E-value=64 Score=18.41 Aligned_cols=38 Identities=11% Similarity=0.085 Sum_probs=29.0
Q ss_pred cCeEEEEEEEeec-CceeEEEEcCccccchhhhheeecccc
Q psy14194 10 DGTWMLKVYVTDL-QIERSLRVKGDLHIGGVMLRLVEDLVT 49 (87)
Q Consensus 10 dgSWeLsV~VtdL-~~evtLRVtGDLHIGGVMLKLVE~l~i 49 (87)
++... |+|..+ +..+++.|..+.-|..++-++-++.++
T Consensus 5 ~~~m~--i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi 43 (87)
T 1wh3_A 5 SSGIQ--VFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGL 43 (87)
T ss_dssp SSSEE--EEEEETTTEEEEEEECSSSBHHHHHHHHHHHTCC
T ss_pred CCCEE--EEEEcCCCCEEEEEeCCCChHHHHHHHHHHHhCC
Confidence 45555 566655 477899999999999999998877654
No 48
>1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase, structural genomics, unknown function; 1.50A {Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A* 4a91_A*
Probab=22.14 E-value=17 Score=27.14 Aligned_cols=16 Identities=31% Similarity=0.596 Sum_probs=11.8
Q ss_pred EEcCccccchhhhhee
Q psy14194 29 RVKGDLHIGGVMLRLV 44 (87)
Q Consensus 29 RVtGDLHIGGVMLKLV 44 (87)
.++|.||||++---|.
T Consensus 13 sPtG~LHiG~~rtal~ 28 (298)
T 1nzj_A 13 SPSGELHFGSLIAALG 28 (298)
T ss_dssp CTTSCCCHHHHHHHHH
T ss_pred CCCCCccHHHHHHHHH
Confidence 3789999998765443
No 49
>4gri_A Glutamate--tRNA ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, aminoacyl-tRNA synthetase; HET: GLU; 2.60A {Borrelia burgdorferi}
Probab=22.00 E-value=22 Score=28.36 Aligned_cols=14 Identities=43% Similarity=0.665 Sum_probs=11.2
Q ss_pred cCccccchhhhhee
Q psy14194 31 KGDLHIGGVMLRLV 44 (87)
Q Consensus 31 tGDLHIGGVMLKLV 44 (87)
+|.||||++---|.
T Consensus 34 tG~LHiG~artAl~ 47 (512)
T 4gri_A 34 TGLQHIGGIRTALF 47 (512)
T ss_dssp SSCCBHHHHHHHHH
T ss_pred CCcccHHHHHHHHH
Confidence 79999999866554
No 50
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=21.47 E-value=72 Score=19.52 Aligned_cols=35 Identities=14% Similarity=0.156 Sum_probs=28.1
Q ss_pred EEEEEeecCceeEEEEcCccccchhhhheeecccc
Q psy14194 15 LKVYVTDLQIERSLRVKGDLHIGGVMLRLVEDLVT 49 (87)
Q Consensus 15 LsV~VtdL~~evtLRVtGDLHIGGVMLKLVE~l~i 49 (87)
..|+|..++...++.|..+.-|+.+.-+|-++.++
T Consensus 23 m~I~Vk~~~g~~~l~v~~~~TV~~LK~~I~~~~gi 57 (100)
T 1yqb_A 23 IKVTVKTPKDKEDFSVTDTCTIQQLKEEISQRFKA 57 (100)
T ss_dssp EEEEEECSSCEEEEEEETTCBHHHHHHHHHHHHTC
T ss_pred EEEEEEcCCCcEEEEECCCCcHHHHHHHHHHHHCc
Confidence 45777777755799999999999999998776654
No 51
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=21.44 E-value=43 Score=20.20 Aligned_cols=36 Identities=17% Similarity=0.233 Sum_probs=28.8
Q ss_pred EEEEEEeecC-ceeEEEEcCccccchhhhheeecccc
Q psy14194 14 MLKVYVTDLQ-IERSLRVKGDLHIGGVMLRLVEDLVT 49 (87)
Q Consensus 14 eLsV~VtdL~-~evtLRVtGDLHIGGVMLKLVE~l~i 49 (87)
...|+|..++ ..+++.|..+.-|+.++-+|-++.++
T Consensus 22 ~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gi 58 (98)
T 4hcn_B 22 PMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGI 58 (98)
T ss_dssp CCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCC
T ss_pred eEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhCC
Confidence 3457777665 77899999999999999998876655
No 52
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=21.41 E-value=68 Score=20.70 Aligned_cols=41 Identities=22% Similarity=0.268 Sum_probs=32.9
Q ss_pred ccCeEEEEEEEeecC-ceeEEEEcCccccchhhhheeecccc
Q psy14194 9 GDGTWMLKVYVTDLQ-IERSLRVKGDLHIGGVMLRLVEDLVT 49 (87)
Q Consensus 9 ~dgSWeLsV~VtdL~-~evtLRVtGDLHIGGVMLKLVE~l~i 49 (87)
...+=+..|+|.++. ..+++.|..+=-||.+.-++-|+.++
T Consensus 16 ~~~~~mIqI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k~Gi 57 (93)
T 3plu_A 16 PRGSHMIEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGT 57 (93)
T ss_dssp ----CEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHHTC
T ss_pred CCCCceEEEEEECCCCCEEEEEECCcCHHHHHHHHHHHHhCC
Confidence 344557789999865 88999999999999999999888776
No 53
>1v05_A Filamin C; actin-binding protein, immunoglobulin; 1.43A {Homo sapiens} SCOP: b.1.18.10 PDB: 2eed_A
Probab=21.34 E-value=76 Score=18.95 Aligned_cols=15 Identities=13% Similarity=0.262 Sum_probs=8.2
Q ss_pred ccCeEEEEEEEeecC
Q psy14194 9 GDGTWMLKVYVTDLQ 23 (87)
Q Consensus 9 ~dgSWeLsV~VtdL~ 23 (87)
+||+|+.+-..++.+
T Consensus 59 ~dGty~v~Y~p~~~G 73 (96)
T 1v05_A 59 GNRVYNVTYTVKEKG 73 (96)
T ss_dssp STTEEEEEEECSSCE
T ss_pred CCCEEEEEEEeCCCE
Confidence 456666555555544
No 54
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=21.27 E-value=88 Score=18.44 Aligned_cols=32 Identities=13% Similarity=0.153 Sum_probs=25.5
Q ss_pred EEEEEeec-CceeEEEEcCccccchhhhheeec
Q psy14194 15 LKVYVTDL-QIERSLRVKGDLHIGGVMLRLVED 46 (87)
Q Consensus 15 LsV~VtdL-~~evtLRVtGDLHIGGVMLKLVE~ 46 (87)
..|+|..+ +..++++|..+.-|+.++-+|-++
T Consensus 8 m~i~Vk~~~g~~~~~~v~~~~TV~~LK~~i~~~ 40 (95)
T 1wia_A 8 INVRLKFLNDTEELAVARPEDTVGTLKSKYFPG 40 (95)
T ss_dssp EEEEEEETTTEEEEEEECSSSBHHHHHHHHSSS
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHhh
Confidence 45667665 477899999999999999888654
No 55
>2bp3_A Filamin A; structural protein, cytoskeleton/complex, actin binding protein, cytoskeleton, complex; 2.32A {Homo sapiens} SCOP: b.1.18.10 PDB: 2aav_A
Probab=21.24 E-value=78 Score=19.01 Aligned_cols=11 Identities=27% Similarity=0.317 Sum_probs=4.8
Q ss_pred cCeEEEEEEEe
Q psy14194 10 DGTWMLKVYVT 20 (87)
Q Consensus 10 dgSWeLsV~Vt 20 (87)
||+|+.+-..+
T Consensus 58 dGty~v~Y~p~ 68 (97)
T 2bp3_A 58 DGTCSVSYLPV 68 (97)
T ss_dssp SSEEEEEEECS
T ss_pred CCEEEEEEEeC
Confidence 44444444443
No 56
>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga maritima}
Probab=21.16 E-value=16 Score=27.75 Aligned_cols=20 Identities=40% Similarity=0.647 Sum_probs=13.3
Q ss_pred EEEcCccccc---hhhhheeecc
Q psy14194 28 LRVKGDLHIG---GVMLRLVEDL 47 (87)
Q Consensus 28 LRVtGDLHIG---GVMLKLVE~l 47 (87)
++=||+|||| |.|.++++-+
T Consensus 19 ~~PTG~lHLGn~~g~l~~~~~lQ 41 (340)
T 2g36_A 19 MRPTGKLHIGHLVGALENWVKLQ 41 (340)
T ss_dssp ECCCSSCBHHHHHTHHHHHHHHH
T ss_pred eCCCCcccHHhHHHHHHHHHHHH
Confidence 3458999999 4554665543
No 57
>1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLU ATP; 1.80A {Thermus thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A* 1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A* 1g59_A 1gln_A
Probab=20.23 E-value=25 Score=27.98 Aligned_cols=16 Identities=31% Similarity=0.605 Sum_probs=11.6
Q ss_pred EcCccccchhhhheee
Q psy14194 30 VKGDLHIGGVMLRLVE 45 (87)
Q Consensus 30 VtGDLHIGGVMLKLVE 45 (87)
-+|.||||++---|..
T Consensus 10 PtG~LHiG~~rtal~n 25 (468)
T 1j09_A 10 PTGDPHVGTAYIALFN 25 (468)
T ss_dssp CSSSCBHHHHHHHHHH
T ss_pred CCCCccHHHHHHHHHH
Confidence 4799999987655543
Done!