RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy14194
         (87 letters)



>gnl|CDD|199833 cd00216, PQQ_DH_like, PQQ-dependent dehydrogenases and related
           proteins.  This family is composed of dehydrogenases
           with pyrroloquinoline quinone (PQQ) as a cofactor, such
           as ethanol, methanol, and membrane-bound glucose
           dehydrogenases. The alignment model contains an 8-bladed
           beta-propeller, and the family also includes distantly
           related proteins which are not enzymatically active and
           do not bind PQQ.
          Length = 434

 Score = 28.3 bits (63), Expect = 0.42
 Identities = 10/45 (22%), Positives = 16/45 (35%), Gaps = 3/45 (6%)

Query: 46  DLVTHMIPSSYSF-GSARPIATHLAPNSYSFALTRRS--LLSPTP 87
           D     + +     G    +    A N   + L RR+  L+S  P
Sbjct: 260 DGDNTPVLADIKVKGKKVKVLFAPAKNGNFYVLDRRNGELVSARP 304


>gnl|CDD|234309 TIGR03683, A-tRNA_syn_arch, alanyl-tRNA synthetase.  This family of
           alanyl-tRNA synthetases is limited to the archaea, and
           is a subset of those sequences identified by the model
           pfam07973 covering the second additional domain (SAD) of
           alanyl and threonyl tRNA synthetases.
          Length = 902

 Score = 26.9 bits (60), Expect = 1.3
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 9/48 (18%)

Query: 1   MMADGVL---VGDGTWMLKVYVTDLQIERSLRVKGDLHIGGVMLRLVE 45
           M+ DG++   V +G      Y+  L I R+LR+  +L +   +  LVE
Sbjct: 341 MLGDGIVPSNVKEG------YLARLVIRRTLRLMRELGLDIPLSDLVE 382


>gnl|CDD|226761 COG4311, SoxD, Sarcosine oxidase delta subunit [Amino acid
          transport and metabolism].
          Length = 97

 Score = 25.4 bits (56), Expect = 2.3
 Identities = 10/32 (31%), Positives = 13/32 (40%), Gaps = 2/32 (6%)

Query: 34 LHIGGV--MLRLVEDLVTHMIPSSYSFGSARP 63
           H  G      +  D VTH I ++Y  G  R 
Sbjct: 58 RHTHGCRRWFNVARDTVTHEISATYKAGGPRA 89


>gnl|CDD|224256 COG1337, COG1337, CRISPR system related protein, RAMP superfamily
          [Defense    mechanisms].
          Length = 249

 Score = 25.5 bits (56), Expect = 3.8
 Identities = 16/55 (29%), Positives = 21/55 (38%), Gaps = 15/55 (27%)

Query: 14 MLKVYVTDLQIERSLRVKGDLHIGG-------------VMLRLVEDLVTHMIPSS 55
          ML V+   + IE  +R+   L IGG             V+   V  L    IP S
Sbjct: 1  MLSVFKGKIIIEGEIRLLTGLRIGGGKEGSDIGGPDNPVIRDPVTGLP--YIPGS 53


>gnl|CDD|166397 PLN02756, PLN02756, S-methyl-5-thioribose kinase.
          Length = 418

 Score = 24.8 bits (54), Expect = 6.8
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 7/49 (14%)

Query: 14  MLKVYVTDLQ---IERSLR-VKGDLHIGGVMLRLVEDLVTHMIPSSYSF 58
           +LK+ + +L+    ER+   V GDLH G VM   V    T +I   ++F
Sbjct: 213 ILKLEIAELKSMFCERAQALVHGDLHTGSVM---VTPDSTQVIDPEFAF 258


>gnl|CDD|236974 PRK11768, PRK11768, serine/threonine protein kinase; Provisional.
          Length = 325

 Score = 24.7 bits (55), Expect = 7.5
 Identities = 8/17 (47%), Positives = 11/17 (64%)

Query: 26  RSLRVKGDLHIGGVMLR 42
           R LR+ GD H G ++ R
Sbjct: 195 RLLRLHGDCHPGNILWR 211


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.322    0.137    0.404 

Gapped
Lambda     K      H
   0.267   0.0715    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,465,785
Number of extensions: 359022
Number of successful extensions: 289
Number of sequences better than 10.0: 1
Number of HSP's gapped: 289
Number of HSP's successfully gapped: 8
Length of query: 87
Length of database: 10,937,602
Length adjustment: 55
Effective length of query: 32
Effective length of database: 8,498,132
Effective search space: 271940224
Effective search space used: 271940224
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.2 bits)