RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy14194
         (87 letters)



>2lgx_A Fermitin family homolog 2; kindlin, membrane, integrin
          activation, cell adhesion; NMR {Homo sapiens}
          Length = 112

 Score = 66.9 bits (163), Expect = 2e-16
 Identities = 27/46 (58%), Positives = 34/46 (73%), Gaps = 1/46 (2%)

Query: 2  MADGVLVGDGTWMLKVYVTDLQIERSLRVKGDLHIGGVMLRLVEDL 47
          M DG    DGTW L V+VTD+  + +LRV G++HIGGVML+LVE L
Sbjct: 15 MPDGC-YADGTWELSVHVTDVNRDVTLRVTGEVHIGGVMLKLVEKL 59


>2kmc_A Fermitin family homolog 1; kindlin, cytoskeleton, integrin,
          N-terminal, talin, cell adhesion, cell junction, cell
          membrane, cell projection; NMR {Mus musculus}
          Length = 102

 Score = 63.5 bits (154), Expect = 4e-15
 Identities = 24/51 (47%), Positives = 31/51 (60%), Gaps = 5/51 (9%)

Query: 1  MMADGVLVGDGTWMLKVYVTDL----QIERSLRVKGDLHIGGVMLRLVEDL 47
          M++ G  +   +W L V V       Q E +LRV GDLHIGGVML+LVE +
Sbjct: 7  MLSSGD-LTSASWELVVRVDHANGEQQTEITLRVSGDLHIGGVMLKLVEQM 56


>2ztg_A Alanyl-tRNA synthetase; class-II aminoacyl-tRNA synthetase,
           aminoacyl-tRNA synthetase, ATP-binding, cytoplasm,
           ligase; HET: A5A; 2.20A {Archaeoglobus fulgidus}
          Length = 739

 Score = 28.4 bits (64), Expect = 0.27
 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 9/54 (16%)

Query: 1   MMADGVL---VGDGTWMLKVYVTDLQIERSLRVKGDLHIGGVMLRLVEDLVTHM 51
           M+ DG++    G G      Y+  L I RSLR+  +L +G  +  LVE     +
Sbjct: 350 MLGDGLVPSNAGAG------YLARLMIRRSLRLAEELELGLDLYDLVEMHKKIL 397


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
          photosynthetic reaction center, peripheral antenna;
          HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 24.9 bits (53), Expect = 3.2
 Identities = 6/18 (33%), Positives = 10/18 (55%), Gaps = 4/18 (22%)

Query: 15 LKVYVTD----LQIERSL 28
          LK+Y  D    L I+ ++
Sbjct: 29 LKLYADDSAPALAIKATM 46


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.322    0.137    0.404 

Gapped
Lambda     K      H
   0.267   0.0747    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,332,273
Number of extensions: 68609
Number of successful extensions: 126
Number of sequences better than 10.0: 1
Number of HSP's gapped: 125
Number of HSP's successfully gapped: 8
Length of query: 87
Length of database: 6,701,793
Length adjustment: 55
Effective length of query: 32
Effective length of database: 5,166,138
Effective search space: 165316416
Effective search space used: 165316416
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.4 bits)