BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy14196
         (79 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3PGW|Z Chain Z, Crystal Structure Of Human U1 Snrnp
 pdb|3PGW|W Chain W, Crystal Structure Of Human U1 Snrnp
 pdb|2Y9A|D Chain D, Structure Of The Spliceosomal U4 Snrnp Core Domain
 pdb|2Y9A|K Chain K, Structure Of The Spliceosomal U4 Snrnp Core Domain
 pdb|2Y9A|R Chain R, Structure Of The Spliceosomal U4 Snrnp Core Domain
 pdb|2Y9B|D Chain D, Structure Of The Spliceosomal U4 Snrnp Core Domain
 pdb|2Y9B|K Chain K, Structure Of The Spliceosomal U4 Snrnp Core Domain
 pdb|2Y9B|R Chain R, Structure Of The Spliceosomal U4 Snrnp Core Domain
 pdb|2Y9C|D Chain D, Structure Of The Spliceosomal U4 Snrnp Core Domain
 pdb|2Y9C|K Chain K, Structure Of The Spliceosomal U4 Snrnp Core Domain
 pdb|2Y9C|R Chain R, Structure Of The Spliceosomal U4 Snrnp Core Domain
 pdb|2Y9D|D Chain D, Structure Of The Spliceosomal U4 Snrnp Core Domain
 pdb|2Y9D|K Chain K, Structure Of The Spliceosomal U4 Snrnp Core Domain
 pdb|2Y9D|R Chain R, Structure Of The Spliceosomal U4 Snrnp Core Domain
          Length = 126

 Score = 97.8 bits (242), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 39/53 (73%), Positives = 50/53 (94%)

Query: 1  MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG 53
          MSIG+PIK+LHEAEGHI+TCET  G+++RGKL+EAEDNMNC M+++TVT+RDG
Sbjct: 1  MSIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDG 53


>pdb|3CW1|D Chain D, Crystal Structure Of Human Spliceosomal U1 Snrnp
 pdb|3CW1|S Chain S, Crystal Structure Of Human Spliceosomal U1 Snrnp
 pdb|3CW1|T Chain T, Crystal Structure Of Human Spliceosomal U1 Snrnp
 pdb|3CW1|U Chain U, Crystal Structure Of Human Spliceosomal U1 Snrnp
          Length = 126

 Score = 97.4 bits (241), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 42/65 (64%), Positives = 53/65 (81%)

Query: 1  MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGTYYLPAL 60
          MSIG+PIK+LHEAEGHI+TCET  G+++RGKL+EAEDNMNC M+++TVT+RDG       
Sbjct: 1  MSIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQ 60

Query: 61 VPIAG 65
          V I G
Sbjct: 61 VYIRG 65


>pdb|1D3B|A Chain A, Crystal Structure Of The D3b Subcomplex Of The Human
          Core Snrnp Domain At 2.0a Resolution
 pdb|1D3B|C Chain C, Crystal Structure Of The D3b Subcomplex Of The Human
          Core Snrnp Domain At 2.0a Resolution
 pdb|1D3B|E Chain E, Crystal Structure Of The D3b Subcomplex Of The Human
          Core Snrnp Domain At 2.0a Resolution
 pdb|1D3B|G Chain G, Crystal Structure Of The D3b Subcomplex Of The Human
          Core Snrnp Domain At 2.0a Resolution
 pdb|1D3B|I Chain I, Crystal Structure Of The D3b Subcomplex Of The Human
          Core Snrnp Domain At 2.0a Resolution
 pdb|1D3B|K Chain K, Crystal Structure Of The D3b Subcomplex Of The Human
          Core Snrnp Domain At 2.0a Resolution
          Length = 75

 Score = 95.9 bits (237), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 39/53 (73%), Positives = 50/53 (94%)

Query: 1  MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG 53
          MSIG+PIK+LHEAEGHI+TCET  G+++RGKL+EAEDNMNC M+++TVT+RDG
Sbjct: 1  MSIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDG 53


>pdb|4EMH|A Chain A, Crystal Structure Of Splsm4
 pdb|4EMH|B Chain B, Crystal Structure Of Splsm4
 pdb|4EMH|C Chain C, Crystal Structure Of Splsm4
 pdb|4EMH|D Chain D, Crystal Structure Of Splsm4
 pdb|4EMH|E Chain E, Crystal Structure Of Splsm4
 pdb|4EMH|F Chain F, Crystal Structure Of Splsm4
 pdb|4EMH|G Chain G, Crystal Structure Of Splsm4
 pdb|4EMH|H Chain H, Crystal Structure Of Splsm4
 pdb|4EMH|I Chain I, Crystal Structure Of Splsm4
 pdb|4EMH|J Chain J, Crystal Structure Of Splsm4
 pdb|4EMH|K Chain K, Crystal Structure Of Splsm4
 pdb|4EMH|L Chain L, Crystal Structure Of Splsm4
 pdb|4EMH|M Chain M, Crystal Structure Of Splsm4
 pdb|4EMH|N Chain N, Crystal Structure Of Splsm4
 pdb|4EMH|O Chain O, Crystal Structure Of Splsm4
 pdb|4EMH|P Chain P, Crystal Structure Of Splsm4
 pdb|4EMH|Q Chain Q, Crystal Structure Of Splsm4
 pdb|4EMH|R Chain R, Crystal Structure Of Splsm4
 pdb|4EMH|T Chain T, Crystal Structure Of Splsm4
 pdb|4EMH|U Chain U, Crystal Structure Of Splsm4
 pdb|4EMH|V Chain V, Crystal Structure Of Splsm4
 pdb|4EMH|W Chain W, Crystal Structure Of Splsm4
 pdb|4EMH|X Chain X, Crystal Structure Of Splsm4
 pdb|4EMH|Y Chain Y, Crystal Structure Of Splsm4
          Length = 105

 Score = 33.1 bits (74), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 16/53 (30%), Positives = 26/53 (49%)

Query: 5  IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGTYYL 57
          +P+ LL+  +G  I  E  NG+ F G L   ++  N  + +V  T  DG  + 
Sbjct: 16 LPLTLLNATQGRPILVELKNGETFNGHLENCDNYXNLTLREVIRTXPDGDKFF 68


>pdb|4DUR|A Chain A, The X-Ray Crystal Structure Of Full-Length Type Ii Human
           Plasminogen
 pdb|4DUR|B Chain B, The X-Ray Crystal Structure Of Full-Length Type Ii Human
           Plasminogen
 pdb|4DUU|A Chain A, The X-Ray Crystal Structure Of Full-Length Type I Human
           Plasminogen
 pdb|4A5T|S Chain S, Structural Basis For The Conformational Modulation
          Length = 791

 Score = 26.9 bits (58), Expect = 2.8,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 2/58 (3%)

Query: 9   LLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGTYYLPALVPIAGM 66
           +L E + ++  C+T NG  +RG + + ++ + C     T   R    + PA  P  G+
Sbjct: 73  VLFEKKVYLSECKTGNGKNYRGTMSKTKNGITCQKWSSTSPHR--PRFSPATHPSEGL 128


>pdb|4IUA|A Chain A, Crystal Structure Of The Nk2 Fragment (31-290) Of The
           Mouse Hepatocyte Growth Factor/scatter Factor
 pdb|4IUA|B Chain B, Crystal Structure Of The Nk2 Fragment (31-290) Of The
           Mouse Hepatocyte Growth Factor/scatter Factor
 pdb|4IUA|C Chain C, Crystal Structure Of The Nk2 Fragment (31-290) Of The
           Mouse Hepatocyte Growth Factor/scatter Factor
 pdb|4IUA|D Chain D, Crystal Structure Of The Nk2 Fragment (31-290) Of The
           Mouse Hepatocyte Growth Factor/scatter Factor
 pdb|4IUA|E Chain E, Crystal Structure Of The Nk2 Fragment (31-290) Of The
           Mouse Hepatocyte Growth Factor/scatter Factor
 pdb|4IUA|F Chain F, Crystal Structure Of The Nk2 Fragment (31-290) Of The
           Mouse Hepatocyte Growth Factor/scatter Factor
 pdb|4IUA|G Chain G, Crystal Structure Of The Nk2 Fragment (31-290) Of The
           Mouse Hepatocyte Growth Factor/scatter Factor
 pdb|4IUA|H Chain H, Crystal Structure Of The Nk2 Fragment (31-290) Of The
           Mouse Hepatocyte Growth Factor/scatter Factor
          Length = 262

 Score = 26.6 bits (57), Expect = 4.2,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 19/48 (39%), Gaps = 2/48 (4%)

Query: 18  ITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGTYYLPALVPIAG 65
           + C T NG+ +RG +   E    C   D     R    +LP   P  G
Sbjct: 182 VECMTANGESYRGPMDHTESGKTCQRWDQQTPHRHK--FLPERYPDKG 227


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.136    0.428 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,584,413
Number of Sequences: 62578
Number of extensions: 90146
Number of successful extensions: 201
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 193
Number of HSP's gapped (non-prelim): 11
length of query: 79
length of database: 14,973,337
effective HSP length: 48
effective length of query: 31
effective length of database: 11,969,593
effective search space: 371057383
effective search space used: 371057383
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)