BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14196
(79 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P62323|SMD3_XENLA Small nuclear ribonucleoprotein Sm D3 OS=Xenopus laevis GN=snrpd3
PE=2 SV=1
Length = 126
Score = 97.8 bits (242), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 39/53 (73%), Positives = 50/53 (94%)
Query: 1 MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG 53
MSIG+PIK+LHEAEGHI+TCET G+++RGKL+EAEDNMNC M+++TVT+RDG
Sbjct: 1 MSIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDG 53
>sp|P62320|SMD3_MOUSE Small nuclear ribonucleoprotein Sm D3 OS=Mus musculus GN=Snrpd3
PE=1 SV=1
Length = 126
Score = 97.8 bits (242), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 39/53 (73%), Positives = 50/53 (94%)
Query: 1 MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG 53
MSIG+PIK+LHEAEGHI+TCET G+++RGKL+EAEDNMNC M+++TVT+RDG
Sbjct: 1 MSIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDG 53
>sp|P62318|SMD3_HUMAN Small nuclear ribonucleoprotein Sm D3 OS=Homo sapiens GN=SNRPD3
PE=1 SV=1
Length = 126
Score = 97.8 bits (242), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 39/53 (73%), Positives = 50/53 (94%)
Query: 1 MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG 53
MSIG+PIK+LHEAEGHI+TCET G+++RGKL+EAEDNMNC M+++TVT+RDG
Sbjct: 1 MSIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDG 53
>sp|O44437|SMD3_DROME Small nuclear ribonucleoprotein Sm D3 OS=Drosophila melanogaster
GN=SmD3 PE=1 SV=1
Length = 151
Score = 95.5 bits (236), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 40/53 (75%), Positives = 48/53 (90%)
Query: 1 MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG 53
MSIG+PIK+LHEAEGHIITCET G+++RGKL+EAEDNMNC M +TVT+RDG
Sbjct: 1 MSIGVPIKVLHEAEGHIITCETITGEVYRGKLIEAEDNMNCQMTQITVTYRDG 53
>sp|Q17348|SMD3_CAEEL Small nuclear ribonucleoprotein Sm D3 OS=Caenorhabditis elegans
GN=snr-1 PE=2 SV=2
Length = 136
Score = 85.9 bits (211), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 35/55 (63%), Positives = 46/55 (83%)
Query: 2 SIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGTYY 56
S+G+PIK+LHEAEGH++T ET G+++RGKL EAEDNMNC +A+ VTFRDG +
Sbjct: 3 SVGVPIKILHEAEGHMVTLETVTGEVYRGKLSEAEDNMNCQLAETVVTFRDGRSH 57
>sp|Q9UUC6|SMD3_SCHPO Small nuclear ribonucleoprotein Sm D3 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=smd3 PE=1 SV=1
Length = 97
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 32/47 (68%), Positives = 38/47 (80%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG 53
IKLLHE +GHI+T E NG +RGKL+EAEDNMNC M D++VT RDG
Sbjct: 5 IKLLHETQGHIVTMELENGSTYRGKLIEAEDNMNCQMRDISVTARDG 51
>sp|P43321|SMD3_YEAST Small nuclear ribonucleoprotein Sm D3 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=SMD3 PE=1 SV=1
Length = 101
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 28/50 (56%), Positives = 37/50 (74%)
Query: 4 GIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG 53
GIP+KLL+EA+GHI++ E T G +RGKLVE+ED+MN + DV T G
Sbjct: 5 GIPVKLLNEAQGHIVSLELTTGATYRGKLVESEDSMNVQLRDVIATEPQG 54
>sp|Q9QXA5|LSM4_MOUSE U6 snRNA-associated Sm-like protein LSm4 OS=Mus musculus GN=Lsm4
PE=2 SV=1
Length = 137
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 29/52 (55%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGTYY 56
+P+ LL A+ H + E NG+ + G LV ++ MN + +V T RDG +
Sbjct: 2 LPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKF 53
>sp|Q9Y4Z0|LSM4_HUMAN U6 snRNA-associated Sm-like protein LSm4 OS=Homo sapiens GN=LSM4
PE=1 SV=1
Length = 139
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 29/52 (55%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGTYY 56
+P+ LL A+ H + E NG+ + G LV ++ MN + +V T RDG +
Sbjct: 2 LPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKF 53
>sp|Q3ZBK6|LSM4_BOVIN U6 snRNA-associated Sm-like protein LSm4 OS=Bos taurus GN=LSM4
PE=2 SV=1
Length = 139
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 29/52 (55%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGTYY 56
+P+ LL A+ H + E NG+ + G LV ++ MN + +V T RDG +
Sbjct: 2 LPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKF 53
>sp|Q43582|LSM4_TOBAC Probable U6 snRNA-associated Sm-like protein LSm4 OS=Nicotiana
tabacum PE=2 SV=1
Length = 146
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 29/52 (55%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGTYY 56
+P+ LL A+GH + E NG+ + G LV + MN + +V T +DG +
Sbjct: 2 LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRF 53
>sp|Q9LGE6|LSM4_ORYSJ Probable U6 snRNA-associated Sm-like protein LSm4 OS=Oryza sativa
subsp. japonica GN=Os01g0256900 PE=2 SV=1
Length = 147
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 29/52 (55%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGTYY 56
+P+ LL A+GH + E NG+ + G LV + MN + +V T +DG +
Sbjct: 2 LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDKF 53
>sp|Q9ZRU9|LSM4_FAGSY Probable U6 snRNA-associated Sm-like protein LSm4 OS=Fagus
sylvatica GN=LSM4 PE=2 SV=1
Length = 148
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 29/52 (55%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGTYY 56
+P+ LL A+GH + E +G+ + G LV + MN + +V T +DG +
Sbjct: 2 LPLSLLKTAQGHPMLVELKSGETYNGHLVNCDTWMNIHLREVICTSKDGDRF 53
>sp|Q19952|LSM4_CAEEL Probable U6 snRNA-associated Sm-like protein LSm4
OS=Caenorhabditis elegans GN=lsm-4 PE=3 SV=1
Length = 123
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 27/53 (50%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGTYYL 57
+P+ LL A+ H + E NG+ + G L + MN + DV T +DG +
Sbjct: 3 LPLSLLKTAQNHPMLVELKNGETYNGHLKACDSWMNIHLVDVIFTSKDGDKFF 55
>sp|Q54KX4|LSM4_DICDI Probable U6 snRNA-associated Sm-like protein LSm4
OS=Dictyostelium discoideum GN=lsm4 PE=3 SV=1
Length = 177
Score = 37.0 bits (84), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 28/52 (53%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGTYY 56
+P+ LL +GH I E NG+ + G LV ++ MN + +V T +D +
Sbjct: 2 LPLSLLRTGQGHQIMVELKNGETYNGLLVNCDNWMNINLKNVIRTSKDSDKF 53
>sp|O14352|LSM4_SCHPO Probable U6 snRNA-associated Sm-like protein LSm4
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=lsm4 PE=1 SV=1
Length = 121
Score = 35.8 bits (81), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 27/53 (50%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGTYYL 57
+P+ LL+ +G I E NG+ F G L ++ MN + +V T DG +
Sbjct: 2 LPLTLLNATQGRPILVELKNGETFNGHLENCDNYMNLTLREVIRTMPDGDKFF 54
>sp|P40070|LSM4_YEAST U6 snRNA-associated Sm-like protein LSm4 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=LSM4 PE=1
SV=1
Length = 187
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 26/43 (60%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVT 47
+P+ LL A+G + E NG++ +G L ++ MN +++VT
Sbjct: 2 LPLYLLTNAKGQQMQIELKNGEIIQGILTNVDNWMNLTLSNVT 44
>sp|B1W3F0|SYT_STRGG Threonine--tRNA ligase OS=Streptomyces griseus subsp. griseus
(strain JCM 4626 / NBRC 13350) GN=thrS PE=3 SV=1
Length = 658
Score = 31.6 bits (70), Expect = 1.4, Method: Composition-based stats.
Identities = 15/47 (31%), Positives = 23/47 (48%)
Query: 12 EAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGTYYLP 58
E E H++T TT G+LF G+ + + D++ RDG P
Sbjct: 13 EREEHVVTTGTTAGELFPGQRTVVAARIGGELKDLSYELRDGESVEP 59
>sp|P06868|PLMN_BOVIN Plasminogen OS=Bos taurus GN=PLG PE=1 SV=2
Length = 812
Score = 30.0 bits (66), Expect = 4.7, Method: Composition-based stats.
Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Query: 9 LLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGTYYLPALVPIAGM 66
+L+E +++ C+T NG +RG E + + C T + P P+AG+
Sbjct: 99 ILYEKRIYLLECKTGNGQTYRGTTAETKSGVTCQKWSATSPHV--PKFSPEKFPLAGL 154
>sp|Q18FB8|VATB_HALWD V-type ATP synthase beta chain OS=Haloquadratum walsbyi (strain
DSM 16790) GN=atpB PE=3 SV=1
Length = 475
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 18/24 (75%)
Query: 16 HIITCETTNGDLFRGKLVEAEDNM 39
I+ ET NGD+ RG+++E+ED +
Sbjct: 27 EIVEIETPNGDIKRGQVLESEDGL 50
>sp|Q02931|UTP17_YEAST NET1-associated nuclear protein 1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=NAN1 PE=1 SV=1
Length = 896
Score = 29.3 bits (64), Expect = 7.2, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 7/56 (12%)
Query: 7 IKLLHEAEGHIITCETTNGDL----FRGKLVEAEDNMNCAMAD---VTVTFRDGTY 55
I + + + H+IT T NG + ++GKLVE+ + ++AD V +G Y
Sbjct: 96 ITVPQQEDAHLITVFTNNGHVIVLNYKGKLVESPKHFKISLADEKLANVFHSEGNY 151
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.136 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,085,023
Number of Sequences: 539616
Number of extensions: 1058363
Number of successful extensions: 2347
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 2327
Number of HSP's gapped (non-prelim): 21
length of query: 79
length of database: 191,569,459
effective HSP length: 50
effective length of query: 29
effective length of database: 164,588,659
effective search space: 4773071111
effective search space used: 4773071111
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)