Query psy14196
Match_columns 79
No_of_seqs 102 out of 660
Neff 5.4
Searched_HMMs 29240
Date Fri Aug 16 21:53:41 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14196.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14196hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2y9a_D Small nuclear ribonucle 99.9 1.8E-23 6.2E-28 139.3 8.0 69 1-69 1-85 (126)
2 1d3b_A Protein (small nuclear 99.9 9.8E-23 3.3E-27 124.4 8.8 71 1-77 1-72 (75)
3 4emh_A Probable U6 snRNA-assoc 99.9 6.1E-22 2.1E-26 128.4 7.2 70 3-72 14-100 (105)
4 1b34_A Protein (small nuclear 99.8 1.6E-19 5.4E-24 118.6 7.4 65 5-69 2-82 (119)
5 4emk_B U6 snRNA-associated SM- 99.8 3.9E-19 1.3E-23 108.0 7.2 69 1-77 1-71 (75)
6 1h64_1 SnRNP SM-like protein; 99.8 2.2E-18 7.5E-23 104.3 8.2 68 4-77 3-71 (75)
7 1i4k_A Putative snRNP SM-like 99.8 3.5E-18 1.2E-22 103.7 8.4 68 4-77 3-71 (77)
8 3s6n_F Small nuclear ribonucle 99.8 6.9E-18 2.3E-22 105.3 9.2 68 3-77 4-73 (86)
9 1n9r_A SMF, small nuclear ribo 99.7 9.1E-18 3.1E-22 106.4 8.0 69 3-77 19-89 (93)
10 1ljo_A Archaeal SM-like protei 99.7 1.4E-17 4.9E-22 101.3 8.3 68 4-77 4-73 (77)
11 1mgq_A SM-like protein; LSM, R 99.7 1.5E-17 5E-22 102.8 8.1 69 3-77 13-82 (83)
12 1th7_A SnRNP-2, small nuclear 99.7 2.3E-17 7.7E-22 101.3 8.8 68 4-77 8-76 (81)
13 1i8f_A Putative snRNP SM-like 99.7 2.7E-17 9.4E-22 101.1 8.1 67 4-77 10-77 (81)
14 4emk_A U6 snRNA-associated SM- 99.7 3.3E-17 1.1E-21 104.2 8.6 69 3-77 18-88 (94)
15 3s6n_G Small nuclear ribonucle 99.7 1E-16 3.5E-21 97.6 7.4 71 1-77 1-71 (76)
16 4emg_A Probable U6 snRNA-assoc 99.7 2.3E-16 7.9E-21 99.7 6.7 50 2-51 6-55 (93)
17 2fwk_A U6 snRNA-associated SM- 99.6 4.8E-16 1.7E-20 102.1 6.2 75 3-77 26-110 (121)
18 3bw1_A SMX4 protein, U6 snRNA- 99.5 1.3E-14 4.5E-19 91.9 7.1 74 4-77 9-84 (96)
19 3s6n_E Small nuclear ribonucle 99.5 7.7E-15 2.6E-19 92.8 4.6 68 4-77 15-88 (92)
20 1m5q_A SMAP3, small nuclear ri 99.5 1.4E-14 4.9E-19 96.7 5.9 44 7-50 2-45 (130)
21 1b34_B Protein (small nuclear 99.5 2.3E-14 7.7E-19 93.7 6.2 74 4-77 26-110 (118)
22 1d3b_B Protein (small nuclear 99.5 2.7E-14 9.3E-19 88.9 5.5 46 5-50 4-49 (91)
23 4emk_C U6 snRNA-associated SM- 99.4 7E-13 2.4E-17 86.5 6.4 48 5-52 23-70 (113)
24 3pgw_B SM B; protein-RNA compl 99.4 2.3E-12 7.9E-17 93.2 8.3 46 5-50 4-49 (231)
25 1y96_A Gemin6, SIP2, GEM-assoc 98.3 1.6E-06 5.6E-11 54.3 6.5 41 5-46 8-49 (86)
26 1kq1_A HFQ, HOST factor for Q 96.8 0.002 6.7E-08 39.4 4.6 34 7-40 9-44 (77)
27 2ylb_A Protein HFQ; RNA-bindin 96.8 0.0019 6.4E-08 39.2 4.4 33 7-39 11-45 (74)
28 3ahu_A Protein HFQ; SM-like mo 96.8 0.0021 7E-08 39.5 4.4 33 8-40 14-48 (78)
29 1u1s_A HFQ protein; SM-like ba 96.7 0.0025 8.7E-08 39.5 4.4 34 7-40 9-44 (82)
30 4a53_A EDC3; RNA binding prote 96.3 0.0066 2.2E-07 40.2 4.8 35 11-46 8-44 (125)
31 2y90_A Protein HFQ; RNA-bindin 96.2 0.0042 1.4E-07 40.0 3.6 34 7-40 11-46 (104)
32 2qtx_A Uncharacterized protein 96.1 0.01 3.6E-07 35.7 4.8 28 13-40 23-50 (71)
33 3sb2_A Protein HFQ; SM-like, R 95.9 0.0076 2.6E-07 37.0 3.4 35 7-41 10-46 (79)
34 2vc8_A Enhancer of mRNA-decapp 93.8 0.13 4.6E-06 31.8 4.9 40 12-54 6-47 (84)
35 3hfo_A SSR3341 protein; HFQ, S 90.6 0.44 1.5E-05 28.4 4.3 33 8-40 12-46 (70)
36 1y96_B Gemin7, SIP3, GEM-assoc 89.9 1 3.6E-05 27.8 5.7 40 7-46 21-61 (85)
37 1ib8_A Conserved protein SP14. 89.5 0.39 1.3E-05 32.2 3.8 40 3-43 89-135 (164)
38 2vxe_A CG10686-PA; EDC3, CAR-1 89.2 1.2 4E-05 27.7 5.6 43 13-55 11-54 (88)
39 3hfn_A ASL2047 protein; HFQ, S 88.4 0.94 3.2E-05 27.1 4.6 33 8-40 14-48 (72)
40 3rux_A BIRA bifunctional prote 84.0 2 6.8E-05 30.5 5.2 33 13-45 222-254 (270)
41 2fb7_A SM-like protein, LSM-14 81.9 1.4 4.9E-05 27.7 3.3 45 11-55 15-60 (95)
42 4hcz_A PHD finger protein 1; p 76.8 4.1 0.00014 23.5 3.9 25 14-38 6-30 (58)
43 1ycy_A Conserved hypothetical 75.2 4.3 0.00015 24.1 3.8 42 7-49 8-49 (71)
44 1sg5_A ORF, hypothetical prote 71.3 2 6.7E-05 26.2 1.7 25 11-35 21-45 (86)
45 2wac_A CG7008-PA; unknown func 70.7 17 0.00057 23.8 6.4 49 13-67 53-112 (218)
46 2rm4_A CG6311-PB, DM EDC3; enh 68.8 16 0.00054 23.1 5.6 36 12-48 9-45 (103)
47 3uby_A DNA-3-methyladenine gly 68.4 7.2 0.00025 27.5 4.4 33 7-39 17-49 (219)
48 2qqr_A JMJC domain-containing 67.9 7.1 0.00024 25.1 3.9 51 13-68 7-60 (118)
49 2e5p_A Protein PHF1, PHD finge 67.0 9 0.00031 22.7 3.9 26 13-38 11-36 (68)
50 2e12_A SM-like motif, hypothet 67.0 6 0.0002 24.9 3.3 25 9-33 21-46 (101)
51 2ej9_A Putative biotin ligase; 66.2 12 0.00042 25.7 5.2 32 13-45 190-221 (237)
52 2xk0_A Polycomb protein PCL; t 64.3 12 0.00042 22.1 4.2 25 12-36 16-40 (69)
53 2m0o_A PHD finger protein 1; t 63.8 3.5 0.00012 25.1 1.7 27 13-39 28-54 (79)
54 2e5q_A PHD finger protein 19; 62.7 10 0.00034 22.1 3.5 25 14-38 10-34 (63)
55 2eqj_A Metal-response element- 58.7 16 0.00054 21.4 3.9 25 14-38 16-40 (66)
56 2equ_A PHD finger protein 20-l 57.1 27 0.00091 20.4 6.3 36 13-53 11-46 (74)
57 1bia_A BIRA bifunctional prote 57.1 20 0.00069 25.5 5.1 32 13-45 271-302 (321)
58 2dxu_A Biotin--[acetyl-COA-car 54.7 10 0.00036 26.1 3.1 30 14-45 188-217 (235)
59 3fdr_A Tudor and KH domain-con 54.1 30 0.001 20.1 6.9 49 13-66 29-88 (94)
60 2eay_A Biotin [acetyl-COA-carb 50.8 11 0.00038 25.8 2.8 31 13-45 186-216 (233)
61 1o9y_A HRCQ2; secretory protei 50.5 28 0.00097 20.3 4.2 35 12-46 46-80 (84)
62 3uep_A YSCQ-C, type III secret 50.0 26 0.00089 21.2 4.1 35 12-46 50-84 (96)
63 3by7_A Uncharacterized protein 49.0 46 0.0016 20.7 5.3 30 19-50 7-36 (100)
64 3v4h_A Hypothetical protein; s 48.3 14 0.00047 25.0 2.8 43 4-50 89-132 (185)
65 2diq_A Tudor and KH domain-con 47.1 25 0.00087 21.1 3.7 50 13-67 34-94 (110)
66 3rkx_A Biotin-[acetyl-COA-carb 45.3 33 0.0011 24.6 4.7 32 13-45 277-308 (323)
67 1nvp_D Transcription initiatio 42.8 32 0.0011 21.6 3.8 29 22-50 51-82 (108)
68 1zq1_A Glutamyl-tRNA(Gln) amid 41.2 20 0.0007 27.4 3.1 28 7-34 4-37 (438)
69 3bfm_A Biotin protein ligase-l 40.7 42 0.0014 22.8 4.4 28 13-45 192-219 (235)
70 1ky9_A Protease DO, DEGP, HTRA 39.6 41 0.0014 25.1 4.5 31 16-46 111-141 (448)
71 4a8c_A Periplasmic PH-dependen 39.5 45 0.0015 24.7 4.7 31 16-46 88-118 (436)
72 1nh2_D Transcription initiatio 39.2 38 0.0013 21.8 3.8 30 22-51 55-87 (121)
73 3tee_A Flagella basal BODY P-r 39.2 24 0.00081 24.3 3.0 23 12-34 168-190 (219)
74 1o6a_A Putative flagellar moto 38.2 45 0.0015 19.9 3.8 35 12-46 50-84 (96)
75 1v6z_A Hypothetical protein TT 37.2 28 0.00095 23.9 3.1 38 8-48 25-62 (228)
76 3bmb_A Regulator of nucleoside 34.5 68 0.0023 20.1 4.4 35 2-36 89-125 (136)
77 3stj_A Protease DEGQ; serine p 34.4 52 0.0018 23.6 4.3 31 16-46 88-118 (345)
78 3sti_A Protease DEGQ; serine p 33.8 50 0.0017 22.6 4.0 31 16-46 88-118 (245)
79 4b9w_A TDRD1, tudor domain-con 33.4 1E+02 0.0035 20.2 6.9 50 13-67 67-127 (201)
80 3tjo_A Serine protease HTRA1; 33.3 66 0.0023 21.4 4.5 32 15-46 86-117 (231)
81 3dgp_B RNA polymerase II trans 33.0 16 0.00054 21.5 1.1 14 26-39 2-15 (71)
82 1q38_A Fibronectin; amyloid fi 33.0 47 0.0016 20.4 3.3 31 22-52 45-75 (89)
83 4b9x_A TDRD1, tudor domain-con 32.9 1.1E+02 0.0038 20.4 6.9 50 13-67 67-127 (226)
84 2pn0_A Prokaryotic transcripti 31.2 65 0.0022 20.4 3.9 35 2-36 92-128 (141)
85 4a4f_A SurviVal of motor neuro 30.7 70 0.0024 17.5 3.8 25 13-37 10-35 (64)
86 3lgi_A Protease DEGS; stress-s 30.7 75 0.0026 21.1 4.4 31 16-46 77-107 (237)
87 2d6f_A Glutamyl-tRNA(Gln) amid 30.2 50 0.0017 25.2 3.7 29 5-34 6-37 (435)
88 3pv2_A DEGQ; trypsin fold, PDZ 29.8 51 0.0018 24.6 3.7 31 16-46 102-132 (451)
89 1lcy_A HTRA2 serine protease; 29.1 77 0.0026 22.3 4.4 31 16-46 71-101 (325)
90 3kl9_A PEPA, glutamyl aminopep 28.9 50 0.0017 24.0 3.4 25 11-35 95-119 (355)
91 3frn_A Flagellar protein FLGA; 28.7 41 0.0014 24.4 2.9 23 12-34 237-260 (278)
92 2egv_A UPF0088 protein AQ_165; 27.5 64 0.0022 22.0 3.6 30 8-38 25-54 (229)
93 1te0_A Protease DEGS; two doma 27.0 85 0.0029 21.9 4.3 31 16-46 66-96 (318)
94 2xdp_A Lysine-specific demethy 26.9 87 0.003 20.1 3.9 25 13-37 66-90 (123)
95 3num_A Serine protease HTRA1; 26.2 1.1E+02 0.0036 21.5 4.6 31 16-46 70-100 (332)
96 1y8t_A Hypothetical protein RV 25.8 89 0.003 21.7 4.2 32 15-46 63-94 (324)
97 3p8d_A Medulloblastoma antigen 25.4 1E+02 0.0035 17.7 5.8 38 13-55 8-45 (67)
98 3he1_A Major exported HCP3 pro 24.7 28 0.00095 23.7 1.3 44 4-50 99-144 (195)
99 1wi5_A RRP5 protein homolog; S 24.6 58 0.002 19.7 2.7 19 21-39 18-36 (119)
100 3eaa_A EVPC; T6SS, unknown fun 24.1 21 0.00073 23.3 0.6 43 4-50 66-109 (163)
101 1mhn_A SurviVal motor neuron p 23.5 94 0.0032 16.6 3.8 24 14-37 6-30 (59)
102 2w5e_A Putative serine proteas 23.3 1.5E+02 0.0051 19.0 4.6 27 16-44 43-69 (163)
103 2k52_A Uncharacterized protein 23.1 49 0.0017 18.5 2.0 19 21-39 2-20 (80)
104 3qo6_A Protease DO-like 1, chl 22.9 1.1E+02 0.0037 21.7 4.2 31 16-46 77-107 (348)
105 2k0q_A Putative uncharacterize 22.0 50 0.0017 19.7 1.9 38 18-55 8-51 (74)
106 2bn8_A CEDA, cell division act 21.9 7.5 0.00026 23.7 -1.8 23 56-78 55-78 (87)
107 2hqx_A P100 CO-activator tudor 21.3 1.9E+02 0.0064 19.2 6.0 25 13-37 67-91 (246)
108 1g5v_A SurviVal motor neuron p 20.7 1.4E+02 0.0048 17.7 3.8 25 13-37 12-37 (88)
109 3ne5_B Cation efflux system pr 20.5 69 0.0024 23.3 2.8 28 13-40 259-288 (413)
110 3qii_A PHD finger protein 20; 20.3 1.5E+02 0.0052 17.8 5.8 38 13-55 23-60 (85)
111 1z85_A Hypothetical protein TM 20.2 1.3E+02 0.0044 20.7 4.0 31 8-38 37-67 (234)
No 1
>2y9a_D Small nuclear ribonucleoprotein SM D3; splicing-RNA complex, PRE-mRNA splicing, spliceosome, snRNP biogenesis, SM site, SM fold, heteromeric heptameric ring; 3.60A {Homo sapiens} PDB: 2y9b_D 2y9c_D 2y9d_D 3pgw_Z* 3cw1_D
Probab=99.89 E-value=1.8e-23 Score=139.29 Aligned_cols=69 Identities=62% Similarity=1.104 Sum_probs=62.6
Q ss_pred CCcCchHHHHhhcCCCeEEEEecCCcEEEEEEeEeCCccceEEeeeEEEccCCeE----------------ecCcccccc
Q psy14196 1 MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGTY----------------YLPALVPIA 64 (79)
Q Consensus 1 m~~~~Pl~lL~~~~g~~V~VeLKnG~~y~G~L~~~D~~MNv~L~n~~~~~~~G~~----------------~lp~~l~~~ 64 (79)
||+..|++||++++|++|+||||||.+|+|+|.+||+|||++|+||+++.++|+. ++||++..+
T Consensus 1 ~~~~~P~~~L~~~~gk~V~VeLknG~~~~G~L~~~D~~MNi~L~dv~e~~~~g~~~~l~~v~IRGnnI~~I~lpd~l~~~ 80 (126)
T 2y9a_D 1 MSIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQVYIRGSKIRFLILPDMLKNA 80 (126)
T ss_dssp ---CCSHHHHHSCSSCEEEEEESSCCEEEEEEEEECTTSCEEEEEEEEECTTSCCEEEEEEEECGGGEEEEECCSSCSSS
T ss_pred CCcccHHHHHHHhCCCEEEEEECCCcEEEEEEEEEcCceEEEEeeEEEEcCCCcEeecccEEEeCCEEEEEEccccccch
Confidence 8999999999999999999999999999999999999999999999999877743 999999999
Q ss_pred ccccc
Q psy14196 65 GMWNG 69 (79)
Q Consensus 65 p~~~~ 69 (79)
|+|+.
T Consensus 81 ~~l~~ 85 (126)
T 2y9a_D 81 PMLKS 85 (126)
T ss_dssp SHHHH
T ss_pred HHhhh
Confidence 99974
No 2
>1d3b_A Protein (small nuclear ribonucleoprotein SM D3); snRNP, splicing, core snRNP domain, systemic lupus eryth SLE, RNA binding protein; HET: CIT; 2.00A {Homo sapiens} SCOP: b.38.1.1
Probab=99.88 E-value=9.8e-23 Score=124.44 Aligned_cols=71 Identities=58% Similarity=1.038 Sum_probs=60.8
Q ss_pred CCcCchHHHHhhcCCCeEEEEecCCcEEEEEEeEeCCccceEEeeeEEEccCCeE-ecCccccccccccccceeEEee
Q psy14196 1 MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGTY-YLPALVPIAGMWNGTSGLRWAT 77 (79)
Q Consensus 1 m~~~~Pl~lL~~~~g~~V~VeLKnG~~y~G~L~~~D~~MNv~L~n~~~~~~~G~~-~lp~~l~~~p~~~~~~~~~~~~ 77 (79)
||++.|++||+++.|++|+||||||++|+|+|.+||+|||++|+||+++.++|+. .++ -.|-|++++||..
T Consensus 1 ~~~~~P~~~L~~~~g~~V~VeLk~g~~~~G~L~~~D~~MNl~L~~~~e~~~~~~~~~lg------~v~IRG~nI~~i~ 72 (75)
T 1d3b_A 1 MSIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLE------QVYIRGCKIRFLI 72 (75)
T ss_dssp ---CCHHHHHHHTTTSEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEECTTSCEEEEE------EEEECGGGEEEEE
T ss_pred CCccCHHHHHHHhCCCEEEEEECCCcEEEEEEEEEccceeEEEEeEEEECCCCcEEEcC------eEEEeCCEEEEEE
Confidence 8899999999999999999999999999999999999999999999999877753 333 3678899998864
No 3
>4emh_A Probable U6 snRNA-associated SM-like protein LSM4; SM fold, mRNA decay, PRE-mRNA splicing, LSM proteins, RNA BI protein; 2.20A {Schizosaccharomyces pombe}
Probab=99.86 E-value=6.1e-22 Score=128.38 Aligned_cols=70 Identities=26% Similarity=0.396 Sum_probs=40.6
Q ss_pred cCchHHHHhhcCCCeEEEEecCCcEEEEEEeEeCCccceEEeeeEEEccCCe-E----------------ecCccccccc
Q psy14196 3 IGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGT-Y----------------YLPALVPIAG 65 (79)
Q Consensus 3 ~~~Pl~lL~~~~g~~V~VeLKnG~~y~G~L~~~D~~MNv~L~n~~~~~~~G~-~----------------~lp~~l~~~p 65 (79)
.+.|++||++++|++|+|+||||++|+|+|.+||+|||++|+||+|+.++|+ . .+||+++.+|
T Consensus 14 ~~~p~~lL~~~igk~V~V~Lk~G~~~~G~L~~~D~~MNlvL~d~~e~~~dg~~~~~lg~v~IRG~nI~~I~~pd~l~d~p 93 (105)
T 4emh_A 14 PMLPLTLLNATQGRPILVELKNGETFNGHLENCDNYMNLTLREVIRTMPDGDKFFRLPECYIRGNNIKYLRIQDEVLSQV 93 (105)
T ss_dssp ------------CCEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEECTTSCEEEEEEEEEECGGGEEEEEC--------
T ss_pred CCcHHHHHHHhCCCEEEEEECCCCEEEEEEEEEcCCceEEEEEEEEEccCCceeeEcCeEEEeCCeEEEEecCHHHhhhh
Confidence 5689999999999999999999999999999999999999999999988884 2 8999999999
Q ss_pred cccccce
Q psy14196 66 MWNGTSG 72 (79)
Q Consensus 66 ~~~~~~~ 72 (79)
+|++.++
T Consensus 94 ~~~~~~~ 100 (105)
T 4emh_A 94 AKQQAQQ 100 (105)
T ss_dssp -------
T ss_pred hhhhhcc
Confidence 9998764
No 4
>1b34_A Protein (small nuclear ribonucleoprotein SM D1); snRNP, splicing, spliceosome, core snRNP domain, systemi erythematosus, SLE, RNA binding protein; 2.50A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_B 2y9b_B 2y9c_B 2y9d_B 3cw1_B 3pgw_X* 3s6n_A
Probab=99.79 E-value=1.6e-19 Score=118.64 Aligned_cols=65 Identities=20% Similarity=0.356 Sum_probs=59.3
Q ss_pred chHHHHhhcCCCeEEEEecCCcEEEEEEeEeCCccceEEeeeEEEccCCeE----------------ecCcccccccccc
Q psy14196 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGTY----------------YLPALVPIAGMWN 68 (79)
Q Consensus 5 ~Pl~lL~~~~g~~V~VeLKnG~~y~G~L~~~D~~MNv~L~n~~~~~~~G~~----------------~lp~~l~~~p~~~ 68 (79)
.|+++|++++|+.|+|+||||.+|+|+|.+||+|||++|+||+|+..+++. ++||.|..+|+|+
T Consensus 2 ~p~~~L~~~~gk~V~V~Lk~g~~~~G~L~~~D~~MNlvL~d~~e~~~~~~~~~lg~v~IRG~nI~~I~~pd~l~~d~~l~ 81 (119)
T 1b34_A 2 KLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGNNIRYFILPDSLPLDTLLV 81 (119)
T ss_dssp CHHHHHHTCTTCEEEEEETTCCEEEEEEEEECTTCCEEEEEEEEECTTSCCEEEEEEEECGGGEEEEECCTTCCHHHHTC
T ss_pred ChHHHHHHhCCCEEEEEEcCCCEEEEEEEEEcccceEEeccEEEecCCCceeEcceEEEcCCeEEEEEeccccccchhHh
Confidence 699999999999999999999999999999999999999999999766532 8899999999886
Q ss_pred c
Q psy14196 69 G 69 (79)
Q Consensus 69 ~ 69 (79)
+
T Consensus 82 ~ 82 (119)
T 1b34_A 82 D 82 (119)
T ss_dssp -
T ss_pred h
Confidence 6
No 5
>4emk_B U6 snRNA-associated SM-like protein LSM6; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_B
Probab=99.78 E-value=3.9e-19 Score=108.01 Aligned_cols=69 Identities=16% Similarity=0.247 Sum_probs=58.7
Q ss_pred CCcCchHHHHhhcCCCeEEEEecCCcEEEEEEeEeCCccceEEeeeEEEccCCeE--ecCccccccccccccceeEEee
Q psy14196 1 MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGTY--YLPALVPIAGMWNGTSGLRWAT 77 (79)
Q Consensus 1 m~~~~Pl~lL~~~~g~~V~VeLKnG~~y~G~L~~~D~~MNv~L~n~~~~~~~G~~--~lp~~l~~~p~~~~~~~~~~~~ 77 (79)
|+ ..|+++|+++.|++|+|+||||++|+|+|.+||+|||++|+||+|.. +|+. .++. +|-|+++++|..
T Consensus 1 m~-~~P~~~L~~~~~k~V~V~Lk~g~~~~G~L~~~D~~mNlvL~d~~e~~-~~~~~~~lg~------v~iRG~~I~~i~ 71 (75)
T 4emk_B 1 MD-SSPNEFLNKVIGKKVLIRLSSGVDYKGILSCLDGYMNLALERTEEYV-NGKKTNVYGD------AFIRGNNVLYVS 71 (75)
T ss_dssp CC-SHHHHHHHHTTTSEEEEECTTSCEEEEEEEEECTTCEEEEEEEEEEE-TTEEEEEEEE------EEEEGGGSSEEE
T ss_pred CC-CchHHHHHHhCCCeEEEEEcCCcEEEEEEEEEcCcceEEEccEEEEe-cCCcccEecE------EEEcCCeEEEEE
Confidence 55 68999999999999999999999999999999999999999999974 4533 3332 677888887764
No 6
>1h64_1 SnRNP SM-like protein; SM fold, spliceosome, snRNP core; 1.9A {Pyrococcus abyssi} SCOP: b.38.1.1 PDB: 1m8v_A*
Probab=99.76 E-value=2.2e-18 Score=104.31 Aligned_cols=68 Identities=15% Similarity=0.189 Sum_probs=58.1
Q ss_pred CchHHHHhhcCCCeEEEEecCCcEEEEEEeEeCCccceEEeeeEEEccCCeE-ecCccccccccccccceeEEee
Q psy14196 4 GIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGTY-YLPALVPIAGMWNGTSGLRWAT 77 (79)
Q Consensus 4 ~~Pl~lL~~~~g~~V~VeLKnG~~y~G~L~~~D~~MNv~L~n~~~~~~~G~~-~lp~~l~~~p~~~~~~~~~~~~ 77 (79)
..|+++|+++.|++|+|+||||++|+|+|.++|+|||++|+||+|+..+++. .++ -+|-|+++++|..
T Consensus 3 ~~P~~~L~~~~~~~V~V~l~~g~~~~G~L~~~D~~mNlvL~d~~e~~~~~~~~~lg------~v~iRG~~I~~i~ 71 (75)
T 1h64_1 3 ERPLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVLADAEMIQDGEVVKRYG------KIVIRGDNVLAIS 71 (75)
T ss_dssp CCHHHHHHTTTTSEEEEEETTSEEEEEEEEEECTTCCEEEEEEEEEETTEEEEEEE------EEEECGGGEEEEE
T ss_pred chHHHHHHHHCCCEEEEEECCCCEEEEEEEEEeCCCCeEEeeEEEEeeCCceeECC------EEEECCCEEEEEE
Confidence 5799999999999999999999999999999999999999999998654332 333 3677888888764
No 7
>1i4k_A Putative snRNP SM-like protein; core snRNP domain, RNA binding protein; HET: CIT; 2.50A {Archaeoglobus fulgidus} SCOP: b.38.1.1 PDB: 1i5l_A*
Probab=99.76 E-value=3.5e-18 Score=103.72 Aligned_cols=68 Identities=15% Similarity=0.170 Sum_probs=58.0
Q ss_pred CchHHHHhhcCCCeEEEEecCCcEEEEEEeEeCCccceEEeeeEEEccCCeE-ecCccccccccccccceeEEee
Q psy14196 4 GIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGTY-YLPALVPIAGMWNGTSGLRWAT 77 (79)
Q Consensus 4 ~~Pl~lL~~~~g~~V~VeLKnG~~y~G~L~~~D~~MNv~L~n~~~~~~~G~~-~lp~~l~~~p~~~~~~~~~~~~ 77 (79)
..|+++|+++.|++|+|+||||++|+|+|.++|+|||++|+||+|+..+++. .++ -+|-|+++++|..
T Consensus 3 ~~P~~~L~~~~~~~V~V~L~~g~~~~G~L~~~D~~mNlvL~d~~e~~~~~~~~~lg------~v~iRG~~I~~i~ 71 (77)
T 1i4k_A 3 PRPLDVLNRSLKSPVIVRLKGGREFRGTLDGYDIHMNLVLLDAEEIQNGEVVRKVG------SVVIRGDTVVFVS 71 (77)
T ss_dssp CCHHHHHHTTTTSEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEEETTEEEEEEE------EEEECGGGEEEEE
T ss_pred ccHHHHHHHhCCCEEEEEEcCCCEEEEEEEEEcCCCCeEEeeEEEEecCCcEeECC------EEEECCCEEEEEE
Confidence 5799999999999999999999999999999999999999999998655433 333 3677888888764
No 8
>3s6n_F Small nuclear ribonucleoprotein F; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_F 2y9c_F 2y9d_F 3cw1_F 3pgw_F* 2y9a_F
Probab=99.75 E-value=6.9e-18 Score=105.34 Aligned_cols=68 Identities=19% Similarity=0.243 Sum_probs=58.8
Q ss_pred cCchHHHHhhcCCCeEEEEecCCcEEEEEEeEeCCccceEEeeeEEEccCCeE--ecCccccccccccccceeEEee
Q psy14196 3 IGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGTY--YLPALVPIAGMWNGTSGLRWAT 77 (79)
Q Consensus 3 ~~~Pl~lL~~~~g~~V~VeLKnG~~y~G~L~~~D~~MNv~L~n~~~~~~~G~~--~lp~~l~~~p~~~~~~~~~~~~ 77 (79)
+..|+++|+++.|++|+|+||||++|+|+|.+||+|||++|+||++.. +|+. .++ -+|-|+++++|..
T Consensus 4 ~~~P~~~L~~~~~k~V~V~Lk~g~~~~G~L~~~D~~mNlvL~d~~e~~-~g~~~~~lg------~v~IRG~nI~~i~ 73 (86)
T 3s6n_F 4 PLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYI-DGALSGHLG------EVLIRCNNVLYIR 73 (86)
T ss_dssp CCCHHHHHHHHTTSEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEEE-TTEEEEEES------SEEECGGGEEEEE
T ss_pred CcCcHHHHHHhCCCeEEEEEcCCeEEEEEEEEEcCceEEEEeeEEEEc-CCceeeEcc------EEEEeCCeEEEEE
Confidence 568999999999999999999999999999999999999999999874 5643 333 3678888888864
No 9
>1n9r_A SMF, small nuclear ribonucleoprotein F, snRNP-F, SM protein F; heptamer, translation; 2.80A {Saccharomyces cerevisiae} SCOP: b.38.1.1 PDB: 1n9s_A
Probab=99.73 E-value=9.1e-18 Score=106.37 Aligned_cols=69 Identities=13% Similarity=0.164 Sum_probs=53.3
Q ss_pred cCchHHHHhhcCCCeEEEEecCC-cEEEEEEeEeCCccceEEeeeEEEccCCeE-ecCccccccccccccceeEEee
Q psy14196 3 IGIPIKLLHEAEGHIITCETTNG-DLFRGKLVEAEDNMNCAMADVTVTFRDGTY-YLPALVPIAGMWNGTSGLRWAT 77 (79)
Q Consensus 3 ~~~Pl~lL~~~~g~~V~VeLKnG-~~y~G~L~~~D~~MNv~L~n~~~~~~~G~~-~lp~~l~~~p~~~~~~~~~~~~ 77 (79)
...|+++|++++|++|+|+|||| ++|+|+|.+||+|||++|+||+|+..+++. .++ -+|-||++++|..
T Consensus 19 ~~~P~~~L~~~i~k~V~V~Lk~g~~~~~G~L~~~D~~MNlvL~d~~E~~~~~~~~~lg------~v~IRG~nI~~I~ 89 (93)
T 1n9r_A 19 PVNPKPFLKGLVNHRVGVKLKFNSTEYRGTLVSTDNYFNLQLNEAEEFVAGVSHGTLG------EIFIRCNNVLYIR 89 (93)
T ss_dssp -------CGGGTTSEEEEEESSTTEEEEEEEEECCTTTCEEEEEEEEEETTEEEEECC------SEEECGGGEEEEE
T ss_pred cCChHHHHHHhCCCEEEEEEcCCCEEEEEEEEEEccccEEEEeeEEEEcCCCeEeEcC------EEEEcCCeEEEEE
Confidence 45799999999999999999999 999999999999999999999998533322 333 4778899998864
No 10
>1ljo_A Archaeal SM-like protein AF-SM2; snRNP, core snRNP domain, RNA binding protein, unknown F; 1.95A {Archaeoglobus fulgidus} SCOP: b.38.1.1
Probab=99.73 E-value=1.4e-17 Score=101.27 Aligned_cols=68 Identities=18% Similarity=0.207 Sum_probs=57.9
Q ss_pred CchHHHHhhcCCCeEEEEecCC-cEEEEEEeEeCCccceEEeeeEEEccCCeE-ecCccccccccccccceeEEee
Q psy14196 4 GIPIKLLHEAEGHIITCETTNG-DLFRGKLVEAEDNMNCAMADVTVTFRDGTY-YLPALVPIAGMWNGTSGLRWAT 77 (79)
Q Consensus 4 ~~Pl~lL~~~~g~~V~VeLKnG-~~y~G~L~~~D~~MNv~L~n~~~~~~~G~~-~lp~~l~~~p~~~~~~~~~~~~ 77 (79)
-.|+++|+++.|+.|+|+|||| ++|+|+|.+||+|||++|+||+|+..+++. .++ -+|-|+++++|..
T Consensus 4 ~~P~~~L~~~~~~~v~V~lk~g~~~~~G~L~~~D~~mNlvL~d~~e~~~~~~~~~lg------~v~iRG~nI~~i~ 73 (77)
T 1ljo_A 4 VLPNQMVKSMVGKIIRVEMKGEENQLVGKLEGVDDYMNLYLTNAMECKGEEKVRSLG------EIVLRGNNVVLIQ 73 (77)
T ss_dssp CCHHHHHHHTTTSEEEEEETTCSSEEEEEEEEECTTCCEEEEEEEEEETTEEEEEEE------EEEECGGGEEEEE
T ss_pred cchHHHHHHHCCCEEEEEEeCCCEEEEEEEEEECCcceEEEeeEEEEecCCcEeECC------eEEEeCCeEEEEE
Confidence 4799999999999999999999 999999999999999999999998744332 333 3677888888764
No 11
>1mgq_A SM-like protein; LSM, RNA-binding, archea, RNA binding protein; 1.70A {Methanothermobacterthermautotrophicus} SCOP: b.38.1.1 PDB: 1i81_A 1loj_A* 1jbm_A 1jri_A
Probab=99.73 E-value=1.5e-17 Score=102.82 Aligned_cols=69 Identities=14% Similarity=0.148 Sum_probs=58.6
Q ss_pred cCchHHHHhhcCCCeEEEEecCCcEEEEEEeEeCCccceEEeeeEEEccCCeE-ecCccccccccccccceeEEee
Q psy14196 3 IGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGTY-YLPALVPIAGMWNGTSGLRWAT 77 (79)
Q Consensus 3 ~~~Pl~lL~~~~g~~V~VeLKnG~~y~G~L~~~D~~MNv~L~n~~~~~~~G~~-~lp~~l~~~p~~~~~~~~~~~~ 77 (79)
...|+++|+++.|++|+|+||||++|+|+|.++|+|||++|+||+|+..+++. .++ -+|-|+++++|..
T Consensus 13 ~~~P~~~L~~~~~~~V~V~Lk~g~~~~G~L~~~D~~mNlvL~d~~e~~~~~~~~~lg------~v~IRG~~I~~i~ 82 (83)
T 1mgq_A 13 VQRPLDALGNSLNSPVIIKLKGDREFRGVLKSFDLHMNLVLNDAEELEDGEVTRRLG------TVLIRGDNIVYIS 82 (83)
T ss_dssp TTCTTHHHHHTTTSEEEEEETTTEEEEEEEEEECTTCCEEEEEEEEEETTEEEEEEE------EEEECGGGEEEEE
T ss_pred CcChHHHHHHhCCCEEEEEEcCCcEEEEEEEEECCCceeEEccEEEEecCCcccCCC------EEEECCCEEEEEE
Confidence 46899999999999999999999999999999999999999999998654332 333 3677888888764
No 12
>1th7_A SnRNP-2, small nuclear riboprotein protein; archaea, SM protein, SM fold, SS-SM1, RNA binding protein; 1.68A {Sulfolobus solfataricus} SCOP: b.38.1.1
Probab=99.73 E-value=2.3e-17 Score=101.33 Aligned_cols=68 Identities=18% Similarity=0.191 Sum_probs=57.9
Q ss_pred CchHHHHhhcCCCeEEEEecCCcEEEEEEeEeCCccceEEeeeEEEccCCeE-ecCccccccccccccceeEEee
Q psy14196 4 GIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGTY-YLPALVPIAGMWNGTSGLRWAT 77 (79)
Q Consensus 4 ~~Pl~lL~~~~g~~V~VeLKnG~~y~G~L~~~D~~MNv~L~n~~~~~~~G~~-~lp~~l~~~p~~~~~~~~~~~~ 77 (79)
..|+++|+++.|++|+|+||||++|+|+|.++|+|||++|+||+|+..+++. .++ -+|-|+++++|..
T Consensus 8 ~~P~~~L~~~~~~~V~V~l~~g~~~~G~L~~~D~~mNlvL~d~~e~~~~~~~~~lg------~v~iRG~~I~~i~ 76 (81)
T 1th7_A 8 ETAHKVLAESLNNLVLVKLKGNKEVRGMLRSYDQHMNLVLSDSEEIQSDGSGKKLG------TIVIRGDNVILIS 76 (81)
T ss_dssp HHHHHHHHHHTTSEEEEEETTTEEEEEEEEEECTTCCEEEEEEEEECSSSCEEEEE------EEEECGGGEEEEE
T ss_pred cchHHHHHHhCCCeEEEEEcCCcEEEEEEEEEcCCCCEEEccEEEEecCCceeECC------EEEECCCEEEEEE
Confidence 4799999999999999999999999999999999999999999998655433 222 3677888888764
No 13
>1i8f_A Putative snRNP SM-like protein; beta barrel-like SMAP monomers form 35-stranded beta-sheet I heptamer, structural genomics; 1.75A {Pyrobaculum aerophilum} SCOP: b.38.1.1 PDB: 1lnx_A*
Probab=99.72 E-value=2.7e-17 Score=101.08 Aligned_cols=67 Identities=15% Similarity=0.154 Sum_probs=57.0
Q ss_pred CchHHHHhhcCCCeEEEEecCCcEEEEEEeEeCCccceEEeeeEEEccCCeE-ecCccccccccccccceeEEee
Q psy14196 4 GIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGTY-YLPALVPIAGMWNGTSGLRWAT 77 (79)
Q Consensus 4 ~~Pl~lL~~~~g~~V~VeLKnG~~y~G~L~~~D~~MNv~L~n~~~~~~~G~~-~lp~~l~~~p~~~~~~~~~~~~ 77 (79)
..|+.+|+++.|++|+|+|+||++|+|+|.++|+|||++|+||+|+ .+++. .++ -+|-|+++++|..
T Consensus 10 ~~P~~~L~~~~~~~V~V~l~~g~~~~G~L~~~D~~mNlvL~d~~e~-~~~~~~~lg------~v~iRG~~I~~i~ 77 (81)
T 1i8f_A 10 ATLGATLQDSIGKQVLVKLRDSHEIRGILRSFDQHVNLLLEDAEEI-IDGNVYKRG------TMVVRGENVLFIS 77 (81)
T ss_dssp CCHHHHHHTTTTSEEEEEEGGGEEEEEEEEEECTTCCEEEEEEEEE-ETTEEEEEE------EEEECGGGEEEEE
T ss_pred cchHHHHHHHCCCeEEEEEcCCcEEEEEEEEEcCCCeeEEccEEEE-cCCcccCCC------EEEECCCEEEEEE
Confidence 5899999999999999999999999999999999999999999998 33332 333 3677888888764
No 14
>4emk_A U6 snRNA-associated SM-like protein LSM5; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_A
Probab=99.72 E-value=3.3e-17 Score=104.25 Aligned_cols=69 Identities=22% Similarity=0.235 Sum_probs=57.3
Q ss_pred cCchHHHHhhcCCCeEEEEecCCcEEEEEEeEeCCccceEEeeeEEEc-cCCeE-ecCccccccccccccceeEEee
Q psy14196 3 IGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTF-RDGTY-YLPALVPIAGMWNGTSGLRWAT 77 (79)
Q Consensus 3 ~~~Pl~lL~~~~g~~V~VeLKnG~~y~G~L~~~D~~MNv~L~n~~~~~-~~G~~-~lp~~l~~~p~~~~~~~~~~~~ 77 (79)
...|+++|+++.|+.|+|+||||++|+|+|.+||+|||++|+||+|+. .+++. .++ -+|-|+++++|..
T Consensus 18 ~~~Pl~lL~~~l~k~V~V~Lk~gr~~~G~L~gfD~~mNlvL~d~~E~~~~~~~~~~lg------~v~IRG~nI~~i~ 88 (94)
T 4emk_A 18 TILPLELIDKCIGSNLWVIMKSEREFAGTLVGFDDYVNIVLKDVTEYDTVTGVTEKHS------EMLLNGNGMCMLI 88 (94)
T ss_dssp --CHHHHHHHTTTSEEEEEESSSEEEEEEEEEECTTCCEEEEEEEEEETTTCCEEEEE------EEEECSTTEEEEE
T ss_pred cccCHHHHHHHcCCeEEEEECCCcEEEEEEEEEcccCCeEeeeEEEEecCCCcEeEcC------EEEEcCCEEEEEE
Confidence 468999999999999999999999999999999999999999999986 33322 332 3677888888865
No 15
>3s6n_G Small nuclear ribonucleoprotein G; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_G 2y9c_G 2y9d_G 3cw1_G 3pgw_G* 2y9a_G
Probab=99.68 E-value=1e-16 Score=97.57 Aligned_cols=71 Identities=14% Similarity=0.058 Sum_probs=46.7
Q ss_pred CCcCchHHHHhhcCCCeEEEEecCCcEEEEEEeEeCCccceEEeeeEEEccCCeEecCccccccccccccceeEEee
Q psy14196 1 MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGTYYLPALVPIAGMWNGTSGLRWAT 77 (79)
Q Consensus 1 m~~~~Pl~lL~~~~g~~V~VeLKnG~~y~G~L~~~D~~MNv~L~n~~~~~~~G~~~lp~~l~~~p~~~~~~~~~~~~ 77 (79)
||- .|.++|+++.|++|+|+||||++|+|+|.++|+|||++|+||+|+..+++. ...--.|-|+++++|..
T Consensus 1 ms~-~~~~~L~~~~~k~V~V~Lk~gr~~~G~L~~~D~~mNlvL~~~~e~~~~~~~-----~~lg~v~iRG~~I~~i~ 71 (76)
T 3s6n_G 1 MSK-AHPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQ-----NNIGMVVIRGNSIIMLE 71 (76)
T ss_dssp --------------CCEEEEEETTTEEEEEEEEEECTTCCEEEEEEEECCCC---------CBSSEEECSSSEEEEE
T ss_pred CCC-cchHHHHHhCCCeEEEEECCCcEEEEEEEEECCcceEEEeceEEEccCCcE-----eEcCEEEECCCeEEEEE
Confidence 553 377999999999999999999999999999999999999999998655432 12223677888888764
No 16
>4emg_A Probable U6 snRNA-associated SM-like protein LSM3; SM fold, mRNA decay, LSM proteins, RNA binding protein; 2.70A {Schizosaccharomyces pombe}
Probab=99.65 E-value=2.3e-16 Score=99.69 Aligned_cols=50 Identities=14% Similarity=0.313 Sum_probs=45.6
Q ss_pred CcCchHHHHhhcCCCeEEEEecCCcEEEEEEeEeCCccceEEeeeEEEcc
Q psy14196 2 SIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFR 51 (79)
Q Consensus 2 ~~~~Pl~lL~~~~g~~V~VeLKnG~~y~G~L~~~D~~MNv~L~n~~~~~~ 51 (79)
+...|+++|+.++|+.|+|+|+||.+|+|+|.+||+|||++|+||+|+..
T Consensus 6 ~~~~Pl~lL~~~~~~~V~V~l~~gr~~~G~L~~~D~~mNlvL~d~~E~~~ 55 (93)
T 4emg_A 6 AVAEPLDLVRLSLDEIVYVKLRGDRELNGRLHAYDEHLNMVLGDAEEIVT 55 (93)
T ss_dssp ---CTTHHHHTTTTSEEEEEETTTEEEEEEEEEECTTCCEEEEEEEEEEC
T ss_pred ccCCCHHHHHHhCCCEEEEEECCCcEEEEEEEEECCcccEEeecEEEEEe
Confidence 46799999999999999999999999999999999999999999999854
No 17
>2fwk_A U6 snRNA-associated SM-like protein LSM5; structural genomics, structural genomics consortium, SGC, DNA binding protein; 2.14A {Cryptosporidium parvum} SCOP: b.38.1.1 PDB: 3pgg_A
Probab=99.63 E-value=4.8e-16 Score=102.10 Aligned_cols=75 Identities=16% Similarity=0.155 Sum_probs=58.0
Q ss_pred cCchHHHHhhcCCCeEEEEecCCcEEEEEEeEeCCccceEEeeeEEEccC---------CeEecCcccccc-ccccccce
Q psy14196 3 IGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRD---------GTYYLPALVPIA-GMWNGTSG 72 (79)
Q Consensus 3 ~~~Pl~lL~~~~g~~V~VeLKnG~~y~G~L~~~D~~MNv~L~n~~~~~~~---------G~~~lp~~l~~~-p~~~~~~~ 72 (79)
...|++||++++|+.|+|+|+||++|+|+|.+||+|||++|+||+|+..+ |+......-+.. -+|-||++
T Consensus 26 ~~~Pl~lL~~~l~k~V~V~Lk~Gr~~~G~L~~fD~~mNlVL~d~~E~~~~~~~~~~~~~g~~~~~~~~r~lG~v~IRG~n 105 (121)
T 2fwk_A 26 IILPLALIDKCIGNRIYVVMKGDKEFSGVLRGFDEYVNMVLDDVQEYGFKADEEDISGGNKKLKRVMVNRLETILLSGNN 105 (121)
T ss_dssp CCCHHHHHHHTBTSBCEEEETTTEEECCEEEEECTTCCEEEESCCEEEC---------------CEECCCCSEEEECGGG
T ss_pred ccCcHHHHHHHcCCeEEEEECCCcEEEEEEEEEcccCCeEeceEEEEEeccccccccccCcccccccceEcceEEECCCE
Confidence 45899999999999999999999999999999999999999999998643 211001102222 37888998
Q ss_pred eEEee
Q psy14196 73 LRWAT 77 (79)
Q Consensus 73 ~~~~~ 77 (79)
+++..
T Consensus 106 Vv~I~ 110 (121)
T 2fwk_A 106 VAMLV 110 (121)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 88865
No 18
>3bw1_A SMX4 protein, U6 snRNA-associated SM-like protein LSM3; RNA-binding protein, SM protein, ring, HOMO octamer, mRNA processing; 2.50A {Saccharomyces cerevisiae}
Probab=99.55 E-value=1.3e-14 Score=91.86 Aligned_cols=74 Identities=12% Similarity=0.087 Sum_probs=55.1
Q ss_pred CchHHHHhhcCCCeEEEEecCCcEEEEEEeEeCCccceEEeeeEEEccCCeE-ecCccccc-cccccccceeEEee
Q psy14196 4 GIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGTY-YLPALVPI-AGMWNGTSGLRWAT 77 (79)
Q Consensus 4 ~~Pl~lL~~~~g~~V~VeLKnG~~y~G~L~~~D~~MNv~L~n~~~~~~~G~~-~lp~~l~~-~p~~~~~~~~~~~~ 77 (79)
.-|+.+|.+++|++|.|+||||++|.|+|.+||+|||++|+||+|+..+... .....-+. --+|-|++++.+..
T Consensus 9 ~~p~~~L~~~i~k~V~V~Lk~gr~~~G~L~~fD~~mNlVL~d~~E~~~~~~~~~~~~~~r~lG~v~IRG~nVv~I~ 84 (96)
T 3bw1_A 9 ETPLDLLKLNLDERVYIKLRGARTLVGTLQAFDSHCNIVLSDAVETIYQLNNEELSESERRCEMVFIRGDTVTLIS 84 (96)
T ss_dssp CCHHHHHGGGTTSEEEEEEGGGCEEEEEEEEECTTCCEEEEEEEEEEECCSTTCCCEEEEEEEEEEECGGGEEEEE
T ss_pred hhHHHHHHHHCCCeEEEEECCCcEEEEEEEEECCCCcEEEcCEEEEeccccccccCcceeEcCEEEECCCEEEEEE
Confidence 4699999999999999999999999999999999999999999998533100 00011111 12566777766653
No 19
>3s6n_E Small nuclear ribonucleoprotein E; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_E 2y9c_E 2y9d_E 3cw1_E 3pgw_E* 2y9a_E
Probab=99.52 E-value=7.7e-15 Score=92.84 Aligned_cols=68 Identities=12% Similarity=0.086 Sum_probs=55.8
Q ss_pred CchHHHHhhcCCCeEEEEe----cCCcEEEEEEeEeCCccceEEeeeEEEccCCeE--ecCccccccccccccceeEEee
Q psy14196 4 GIPIKLLHEAEGHIITCET----TNGDLFRGKLVEAEDNMNCAMADVTVTFRDGTY--YLPALVPIAGMWNGTSGLRWAT 77 (79)
Q Consensus 4 ~~Pl~lL~~~~g~~V~VeL----KnG~~y~G~L~~~D~~MNv~L~n~~~~~~~G~~--~lp~~l~~~p~~~~~~~~~~~~ 77 (79)
..|++||.++.++.|.|++ +||.+|+|+|.+||.|||++|+||+|+..+++. .++ -.|-|++++.+..
T Consensus 15 ~~Pl~lL~~~l~~~v~V~l~~~~~~gr~~~G~L~gfD~~mNlvL~d~~E~~~~~~~~~~lg------~v~iRG~nV~~i~ 88 (92)
T 3s6n_E 15 VQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLG------RIMLKGDNITLLQ 88 (92)
T ss_dssp CCHHHHHHHHHHHTCEEEEEESSSCSSEEEEEEEEECTTCCEEEEEEEEECSSSCCEEEEE------EEEECGGGEEEEE
T ss_pred cCCHHHHHHHhCCCEEEEEEEEecCCEEEEEEEEEEcCcCcEEEeeeEEEecCCCceeEcC------eEEEeCCEEEEEE
Confidence 4699999999999999999 999999999999999999999999998644421 222 2566777766653
No 20
>1m5q_A SMAP3, small nuclear ribonucleoprotein homolog, SM-like P; OB-like fold, B-sheet toroid, 14-MER, cadmium-binding site, translation; 2.00A {Pyrobaculum aerophilum} SCOP: b.38.1.1
Probab=99.52 E-value=1.4e-14 Score=96.69 Aligned_cols=44 Identities=18% Similarity=0.406 Sum_probs=41.7
Q ss_pred HHHHhhcCCCeEEEEecCCcEEEEEEeEeCCccceEEeeeEEEc
Q psy14196 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTF 50 (79)
Q Consensus 7 l~lL~~~~g~~V~VeLKnG~~y~G~L~~~D~~MNv~L~n~~~~~ 50 (79)
.++|++++|++|+|+||||.+|+|+|.++|+|||++|+||+++.
T Consensus 2 ~~~L~~~igk~V~V~Lk~G~~~~G~L~~~D~~MNlvL~d~~E~~ 45 (130)
T 1m5q_A 2 VAELNNLLGREVQVVLSNGEVYKGVLHAVDNQLNIVLANASNKA 45 (130)
T ss_dssp HHHHHHTTTSEEEEEETTSCEEEEEEEEECTTCCEEEEEEECTT
T ss_pred hhHHHHhCCCeEEEEECCCcEEEEEEEEEcccceeEEeeEEEEc
Confidence 36899999999999999999999999999999999999999973
No 21
>1b34_B Protein (small nuclear ribonucleoprotein SM D2); snRNP, splicing, spliceosome, core snRNP domain, systemi erythematosus, SLE, RNA binding protein; 2.50A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_C 2y9b_C 2y9c_C 2y9d_C 3cw1_C 3pgw_Y* 3s6n_B
Probab=99.51 E-value=2.3e-14 Score=93.66 Aligned_cols=74 Identities=12% Similarity=0.151 Sum_probs=54.8
Q ss_pred CchHHHHhhcC--CCeEEEEecCCcEEEEEEeEeCCccceEEeeeEEEccC----CeE-e----cCccccccccccccce
Q psy14196 4 GIPIKLLHEAE--GHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRD----GTY-Y----LPALVPIAGMWNGTSG 72 (79)
Q Consensus 4 ~~Pl~lL~~~~--g~~V~VeLKnG~~y~G~L~~~D~~MNv~L~n~~~~~~~----G~~-~----lp~~l~~~p~~~~~~~ 72 (79)
..|+++|+.+. |+.|.|+|+||++|+|+|.+||+|||++|+||+|+... |+. . ....-..--+|-||++
T Consensus 26 ~~Pl~lL~~~~~~~k~V~V~Lk~gr~~~G~L~~fD~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~~~r~lg~v~IRG~n 105 (118)
T 1b34_B 26 TGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDS 105 (118)
T ss_dssp CCHHHHHHHHHHHTCEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEC-------------------CEEEEEEEECGGG
T ss_pred cChHHHHHHHhcCCcEEEEEECCCcEEEEEEEEeCCceEEEEeCEEEEEecccccccccccccccccccCcCeEEEcCCE
Confidence 47999999999 59999999999999999999999999999999997422 110 0 0000012237888888
Q ss_pred eEEee
Q psy14196 73 LRWAT 77 (79)
Q Consensus 73 ~~~~~ 77 (79)
+.+..
T Consensus 106 Vv~I~ 110 (118)
T 1b34_B 106 VIVVL 110 (118)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 88764
No 22
>1d3b_B Protein (small nuclear ribonucleoprotein associat B); snRNP, splicing, core snRNP domain, systemic lupus eryth SLE, RNA binding protein; HET: CIT; 2.00A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_A 2y9b_A 2y9c_A 2y9d_A
Probab=99.50 E-value=2.7e-14 Score=88.89 Aligned_cols=46 Identities=15% Similarity=0.197 Sum_probs=41.5
Q ss_pred chHHHHhhcCCCeEEEEecCCcEEEEEEeEeCCccceEEeeeEEEc
Q psy14196 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTF 50 (79)
Q Consensus 5 ~Pl~lL~~~~g~~V~VeLKnG~~y~G~L~~~D~~MNv~L~n~~~~~ 50 (79)
.|..+|.+++|+.|.|+|+||++|.|+|.+||+|||++|+||+|+.
T Consensus 4 ~~~~~L~~~~~k~V~V~l~~gr~~~G~L~~~D~~mNlvL~d~~E~~ 49 (91)
T 1d3b_B 4 GKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFR 49 (91)
T ss_dssp ---CCCGGGTTSEEEEEETTCCEEEEEEEECCTTCCEEEEEEEEEE
T ss_pred ChhHHHHHHcCCcEEEEECCCeEEEEEEEEECCCCeEEecCEEEEe
Confidence 4778999999999999999999999999999999999999999963
No 23
>4emk_C U6 snRNA-associated SM-like protein LSM7; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_C
Probab=99.39 E-value=7e-13 Score=86.46 Aligned_cols=48 Identities=25% Similarity=0.261 Sum_probs=36.3
Q ss_pred chHHHHhhcCCCeEEEEecCCcEEEEEEeEeCCccceEEeeeEEEccC
Q psy14196 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRD 52 (79)
Q Consensus 5 ~Pl~lL~~~~g~~V~VeLKnG~~y~G~L~~~D~~MNv~L~n~~~~~~~ 52 (79)
-|+..|.+++|+.|.|+|+||++|.|+|.+||.|||++|+||+|+..+
T Consensus 23 e~i~~L~~~l~k~V~V~L~dGr~~~G~L~~fD~~mNLVL~d~~E~~~~ 70 (113)
T 4emk_C 23 ESILDLSRYQDQRIQATFTGGRQITGILKGFDQLMNLVLDDVEEQLRN 70 (113)
T ss_dssp ---------CCSEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEEC--
T ss_pred chHHHHHHHcCCcEEEEEeCCeEEEEEEEEEcCcccEEEeeEEEEEcC
Confidence 366789999999999999999999999999999999999999998543
No 24
>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A
Probab=99.36 E-value=2.3e-12 Score=93.16 Aligned_cols=46 Identities=15% Similarity=0.197 Sum_probs=43.4
Q ss_pred chHHHHhhcCCCeEEEEecCCcEEEEEEeEeCCccceEEeeeEEEc
Q psy14196 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTF 50 (79)
Q Consensus 5 ~Pl~lL~~~~g~~V~VeLKnG~~y~G~L~~~D~~MNv~L~n~~~~~ 50 (79)
.+-..|.+.+|+.|.|+|+||++|.|+|.+||.|||++|+||+|+.
T Consensus 4 ~k~~kL~klIdKrV~V~LkdGRel~GtLkgFDq~MNLVL~Da~E~~ 49 (231)
T 3pgw_B 4 GKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFR 49 (231)
T ss_pred CchHHHHHhcCCeEEEEECCCcEEEEEEEEEcccccEEecCEEEEE
Confidence 4677899999999999999999999999999999999999999974
No 25
>1y96_A Gemin6, SIP2, GEM-associated protein 6; SM fold, protein complex, RNA binding protein; 2.00A {Homo sapiens}
Probab=98.33 E-value=1.6e-06 Score=54.32 Aligned_cols=41 Identities=7% Similarity=0.184 Sum_probs=37.9
Q ss_pred chHHHHhhcCCCeEEEEecCCcEEEEEEeEeC-CccceEEeee
Q psy14196 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAE-DNMNCAMADV 46 (79)
Q Consensus 5 ~Pl~lL~~~~g~~V~VeLKnG~~y~G~L~~~D-~~MNv~L~n~ 46 (79)
.|+ -|+..+|+.|.|.|.||.+|+|.|.++| ...|++|.|+
T Consensus 8 ~p~-el~~li~KeV~V~l~dg~~y~G~l~tvDp~s~sIvL~n~ 49 (86)
T 1y96_A 8 GPL-EWQDYIYKEVRVTASEKNEYKGWVLTTDPVSANIVLVNF 49 (86)
T ss_dssp CHH-HHHHTTTCEEEEEETTTEEEEEEEEEECTTTCCEEEEEE
T ss_pred CHH-HHHhhcCCEEEEEEcCCCEEEEEEEEECCCceEEEEeec
Confidence 455 5789999999999999999999999999 7889999999
No 26
>1kq1_A HFQ, HOST factor for Q beta; hexamer, RNA binding protein, translational regulator, SM motif; 1.55A {Staphylococcus aureus} SCOP: b.38.1.2 PDB: 1kq2_A
Probab=96.82 E-value=0.002 Score=39.39 Aligned_cols=34 Identities=21% Similarity=0.135 Sum_probs=30.4
Q ss_pred HHHHhhcC--CCeEEEEecCCcEEEEEEeEeCCccc
Q psy14196 7 IKLLHEAE--GHIITCETTNGDLFRGKLVEAEDNMN 40 (79)
Q Consensus 7 l~lL~~~~--g~~V~VeLKnG~~y~G~L~~~D~~MN 40 (79)
-.||+.+. +.+|+|.|.||...+|++.++|.|+=
T Consensus 9 d~fLn~lrk~k~~VtI~L~nG~~l~G~I~~fD~f~V 44 (77)
T 1kq1_A 9 DKALENFKANQTEVTVFFLNGFQMKGVIEEYDKYVV 44 (77)
T ss_dssp HHHHHHHHHHTCEEEEEETTSCEEEEEEEEECSSEE
T ss_pred HHHHHHHHhcCCeEEEEEeCCCEEEEEEEEECCcEE
Confidence 36788877 89999999999999999999999973
No 27
>2ylb_A Protein HFQ; RNA-binding protein, LSM protein, RNA chaperone; 1.15A {Salmonella enterica subsp} PDB: 2yht_A 1hk9_A 2ylc_A* 3gib_A* 3rer_A* 3qo3_A* 3res_A*
Probab=96.79 E-value=0.0019 Score=39.18 Aligned_cols=33 Identities=12% Similarity=0.132 Sum_probs=29.8
Q ss_pred HHHHhhcC--CCeEEEEecCCcEEEEEEeEeCCcc
Q psy14196 7 IKLLHEAE--GHIITCETTNGDLFRGKLVEAEDNM 39 (79)
Q Consensus 7 l~lL~~~~--g~~V~VeLKnG~~y~G~L~~~D~~M 39 (79)
-.+|+.+. +.+|+|.|.||...+|++.++|.|+
T Consensus 11 d~~L~~lrk~k~~Vti~L~nG~~l~G~I~~fD~f~ 45 (74)
T 2ylb_A 11 DPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFV 45 (74)
T ss_dssp HHHHHHHHHHTCCEEEEETTSCEEEEEEEEECSSE
T ss_pred HHHHHHHHhcCCcEEEEEeCCCEEEEEEEEECCcE
Confidence 36777776 8899999999999999999999997
No 28
>3ahu_A Protein HFQ; SM-like motif, protein-RNA complex, translation-RNA complex; 2.20A {Bacillus subtilis} PDB: 3hsb_A
Probab=96.75 E-value=0.0021 Score=39.48 Aligned_cols=33 Identities=18% Similarity=0.240 Sum_probs=30.0
Q ss_pred HHHhhcC--CCeEEEEecCCcEEEEEEeEeCCccc
Q psy14196 8 KLLHEAE--GHIITCETTNGDLFRGKLVEAEDNMN 40 (79)
Q Consensus 8 ~lL~~~~--g~~V~VeLKnG~~y~G~L~~~D~~MN 40 (79)
.+|+.+. +.+|+|-|.||...+|.+.++|.|+=
T Consensus 14 ~fLn~lrk~~~~Vtv~L~nG~~l~G~I~~fD~f~V 48 (78)
T 3ahu_A 14 QFLNQIRKENTYVTVFLLNGFQLRGQVKGFDNFTV 48 (78)
T ss_dssp HHHHHHHHHTCCEEEEETTSCEEEEEEEEECSSEE
T ss_pred HHHHHHHHcCCcEEEEEeCCeEEEEEEEEEcceEE
Confidence 6778777 89999999999999999999999973
No 29
>1u1s_A HFQ protein; SM-like bacterial protein, riken structural genomics/proteomics initiative, RSGI, structural genomics, RNA binding protein; 1.60A {Pseudomonas aeruginosa} SCOP: b.38.1.2 PDB: 1u1t_A 3qui_A* 3m4g_A 3inz_A
Probab=96.67 E-value=0.0025 Score=39.45 Aligned_cols=34 Identities=12% Similarity=0.081 Sum_probs=30.0
Q ss_pred HHHHhhcC--CCeEEEEecCCcEEEEEEeEeCCccc
Q psy14196 7 IKLLHEAE--GHIITCETTNGDLFRGKLVEAEDNMN 40 (79)
Q Consensus 7 l~lL~~~~--g~~V~VeLKnG~~y~G~L~~~D~~MN 40 (79)
-.||+.+. +.+|+|-|.||...+|.+.++|.|+=
T Consensus 9 d~fLn~lrk~~~~Vtv~L~NG~~l~G~I~~fD~ftV 44 (82)
T 1u1s_A 9 DPYLNTLRKERVPVSIYLVNGIKLQGQIESFDQFVI 44 (82)
T ss_dssp HHHHHHHHHTTCCEEEEETTSCEEEEEEEEECSSEE
T ss_pred HHHHHHHHHcCCcEEEEEeCCcEEEEEEEEEcceEE
Confidence 36777766 88999999999999999999999983
No 30
>4a53_A EDC3; RNA binding protein; NMR {Schizosaccharomyces pombe} PDB: 4a54_A
Probab=96.29 E-value=0.0066 Score=40.22 Aligned_cols=35 Identities=14% Similarity=0.136 Sum_probs=30.3
Q ss_pred hhcCCCeEEEEecCCcEEEEEEeEeCCccceEE--eee
Q psy14196 11 HEAEGHIITCETTNGDLFRGKLVEAEDNMNCAM--ADV 46 (79)
Q Consensus 11 ~~~~g~~V~VeLKnG~~y~G~L~~~D~~MNv~L--~n~ 46 (79)
.+.+|..|.|+||+|..++|+++.+|. =++.| .+|
T Consensus 8 sqFlGy~V~v~LkDgs~~qG~I~~vd~-k~LtL~~~~a 44 (125)
T 4a53_A 8 ADFYGSNVEVLLNNDSKARGVITNFDS-SNSILQLRLA 44 (125)
T ss_dssp HHHTTCEEEEEETTSCEEEEEEEEEET-TTTEEEEEET
T ss_pred HHhcCceEEEEECCCCEeeEEEEeecC-CeeEEecccc
Confidence 467899999999999999999999985 35666 887
No 31
>2y90_A Protein HFQ; RNA-binding protein, SM-like, RNA chaperone; 2.25A {Escherichia coli} PDB: 3qhs_A
Probab=96.24 E-value=0.0042 Score=39.96 Aligned_cols=34 Identities=12% Similarity=0.125 Sum_probs=29.3
Q ss_pred HHHHhhcCCC--eEEEEecCCcEEEEEEeEeCCccc
Q psy14196 7 IKLLHEAEGH--IITCETTNGDLFRGKLVEAEDNMN 40 (79)
Q Consensus 7 l~lL~~~~g~--~V~VeLKnG~~y~G~L~~~D~~MN 40 (79)
-.||+.+..+ +|+|.|.||..++|++.++|.|+=
T Consensus 11 d~fLn~lrk~k~~VtI~LvNG~~L~G~I~~fD~f~V 46 (104)
T 2y90_A 11 DPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVI 46 (104)
T ss_dssp HHHHHHHHHTTCCEEEEETTSCEEEEEEEEECSSEE
T ss_pred HHHHHHHHhcCCcEEEEEeCCCEEEEEEEEECCcEE
Confidence 3677776655 899999999999999999999983
No 32
>2qtx_A Uncharacterized protein MJ1435; HFQ, SM, RNA-binding protein, sRNA, translational regulation, RNA binding protein; 2.50A {Methanocaldococcus jannaschii}
Probab=96.14 E-value=0.01 Score=35.74 Aligned_cols=28 Identities=11% Similarity=0.206 Sum_probs=25.5
Q ss_pred cCCCeEEEEecCCcEEEEEEeEeCCccc
Q psy14196 13 AEGHIITCETTNGDLFRGKLVEAEDNMN 40 (79)
Q Consensus 13 ~~g~~V~VeLKnG~~y~G~L~~~D~~MN 40 (79)
..+.+|+|-|.||...+|.+.++|.|+=
T Consensus 23 ~~~~~Vtv~L~NG~~l~G~I~~fD~ftV 50 (71)
T 2qtx_A 23 LNGKKVKIFLRNGEVLDAEVTGVSNYEI 50 (71)
T ss_dssp GTTCEEEEEETTSCEEEEEEEEECSSEE
T ss_pred HcCCcEEEEEeCCeEEEEEEEEEcceEE
Confidence 4678899999999999999999999973
No 33
>3sb2_A Protein HFQ; SM-like, RNA chaperone, chaperone; 2.63A {Herbaspirillum seropedicae} SCOP: b.38.1.2
Probab=95.88 E-value=0.0076 Score=36.99 Aligned_cols=35 Identities=11% Similarity=0.084 Sum_probs=28.7
Q ss_pred HHHHhhcC--CCeEEEEecCCcEEEEEEeEeCCccce
Q psy14196 7 IKLLHEAE--GHIITCETTNGDLFRGKLVEAEDNMNC 41 (79)
Q Consensus 7 l~lL~~~~--g~~V~VeLKnG~~y~G~L~~~D~~MNv 41 (79)
-.||+.+. +.+|+|.|.||...+|++.++|.|+=+
T Consensus 10 d~fLn~lrk~k~~VtI~LvnG~~L~G~I~~fD~f~Vl 46 (79)
T 3sb2_A 10 DPFLNALRKEHVPVSIYLVNGIKLQGHVESFDQYVVL 46 (79)
T ss_dssp HHHHHHHHHTTCCEEEEETTSCEEEEEEEEECSSEEE
T ss_pred HHHHHHHHhcCCeEEEEEeCCCEEEEEEEEECCcEEE
Confidence 35666654 556999999999999999999999743
No 34
>2vc8_A Enhancer of mRNA-decapping protein 3; P-BODY component, cytoplasm, SM-like protein, protein-binding; 1.31A {Homo sapiens}
Probab=93.80 E-value=0.13 Score=31.82 Aligned_cols=40 Identities=10% Similarity=0.299 Sum_probs=34.7
Q ss_pred hcCCCeEEEEecCCc-EEEEEEeEeCCcc-ceEEeeeEEEccCCe
Q psy14196 12 EAEGHIITCETTNGD-LFRGKLVEAEDNM-NCAMADVTVTFRDGT 54 (79)
Q Consensus 12 ~~~g~~V~VeLKnG~-~y~G~L~~~D~~M-Nv~L~n~~~~~~~G~ 54 (79)
+-+|+.|+|+.+++. .|.|.|..+|..= ++.|.+|- ++|-
T Consensus 6 ~~iGs~VSi~c~d~lGvYQG~i~~vd~~~~tItL~~~f---~NG~ 47 (84)
T 2vc8_A 6 DWLGSIVSINCGDSLGVYQGRVSAVDQVSQTISLTRPF---HNGV 47 (84)
T ss_dssp TTTTCEEEEECCTTTCEEEEEEEEEETTTTEEEEEEEE---ETTE
T ss_pred cccCCEEEEEECCCceEEEEEEEEeccCCCeEEEehhh---hCCC
Confidence 468999999999999 9999999999864 89999993 4673
No 35
>3hfo_A SSR3341 protein; HFQ, SM, RNA-binding protein, sRNA, translational regulation binding protein; 1.30A {Synechocystis SP}
Probab=90.64 E-value=0.44 Score=28.41 Aligned_cols=33 Identities=9% Similarity=0.096 Sum_probs=27.0
Q ss_pred HHHhhc--CCCeEEEEecCCcEEEEEEeEeCCccc
Q psy14196 8 KLLHEA--EGHIITCETTNGDLFRGKLVEAEDNMN 40 (79)
Q Consensus 8 ~lL~~~--~g~~V~VeLKnG~~y~G~L~~~D~~MN 40 (79)
..|+.. ...+|.|+|-+|..+.|.+.-.|.+.=
T Consensus 12 R~lQ~~ik~k~~V~I~L~tG~~l~G~i~WQD~~cl 46 (70)
T 3hfo_A 12 RQVQLLIKDQTPVEIKLLTGDSLFGTIRWQDTDGL 46 (70)
T ss_dssp HHHHHHHHHTCEEEEEETTSCEEEEEEEEECSSEE
T ss_pred HHHHHHHhhCceEEEEecCCCEEEEEEEEeCCCEE
Confidence 445543 357899999999999999999999863
No 36
>1y96_B Gemin7, SIP3, GEM-associated protein 7; SM fold, protein complex, RNA binding protein; 2.00A {Homo sapiens}
Probab=89.86 E-value=1 Score=27.78 Aligned_cols=40 Identities=13% Similarity=0.224 Sum_probs=35.7
Q ss_pred HHHHhhcCCCeEEEEecCCcEEEEEEeEeCCcc-ceEEeee
Q psy14196 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNM-NCAMADV 46 (79)
Q Consensus 7 l~lL~~~~g~~V~VeLKnG~~y~G~L~~~D~~M-Nv~L~n~ 46 (79)
|.+|..+.|++|.+.++.+.+..|+...+|..- |+..+|-
T Consensus 21 Lr~l~~m~~~~v~f~m~E~t~V~a~F~a~d~d~~~f~Vs~L 61 (85)
T 1y96_B 21 LRSLLAMVGHQVSFTLHEGVRVAAHFGATDLDVANFYVSQL 61 (85)
T ss_dssp HHHHHHHTTSEEEEEEGGGCEEEEEEEEECTTCCEEEEEEE
T ss_pred HHHHHHhCCCceEEEEeCCeEEEEEEEecCcccceeEhhhc
Confidence 578889999999999999999999999999855 8887774
No 37
>1ib8_A Conserved protein SP14.3; nucleic acid binding protein, ribosomal protein, essential gene, structural genomics; NMR {Streptococcus pneumoniae} SCOP: b.38.2.1 d.52.4.1
Probab=89.47 E-value=0.39 Score=32.16 Aligned_cols=40 Identities=25% Similarity=0.404 Sum_probs=30.1
Q ss_pred cCchHHH---HhhcCCCeEEEEec----CCcEEEEEEeEeCCccceEE
Q psy14196 3 IGIPIKL---LHEAEGHIITCETT----NGDLFRGKLVEAEDNMNCAM 43 (79)
Q Consensus 3 ~~~Pl~l---L~~~~g~~V~VeLK----nG~~y~G~L~~~D~~MNv~L 43 (79)
..+||.- .....|+.|.|+|+ +...|+|+|.++|+-. +.|
T Consensus 89 ldRpL~~~~df~r~~G~~V~V~l~~~~~g~k~~~G~L~~~~~~~-v~l 135 (164)
T 1ib8_A 89 LERPLKTKDAVAGAVGKYIHVGLYQAIDKQKVFEGTLLAFEEDE-LTM 135 (164)
T ss_dssp SSSCCSSHHHHHHHCSEEEEEECSSCSSSCSEEEEEEEEEETTE-EEE
T ss_pred CCCCCCCHHHHHHhCCcEEEEEEecccCCceEEEEEEEEEeCCE-EEE
Confidence 4566644 34689999999994 4599999999999853 444
No 38
>2vxe_A CG10686-PA; EDC3, CAR-1, P-bodies, decapping, mRNA decay, LSM proteins, translational repression, transcription; NMR {Drosophila melanogaster}
Probab=89.17 E-value=1.2 Score=27.70 Aligned_cols=43 Identities=14% Similarity=0.144 Sum_probs=37.9
Q ss_pred cCCCeEEEEecCCcEEEEEEeEeCCc-cceEEeeeEEEccCCeE
Q psy14196 13 AEGHIITCETTNGDLFRGKLVEAEDN-MNCAMADVTVTFRDGTY 55 (79)
Q Consensus 13 ~~g~~V~VeLKnG~~y~G~L~~~D~~-MNv~L~n~~~~~~~G~~ 55 (79)
.+|+.+.+-.|.+--|.|.|..+|.. --+.|+||+..-.+|+.
T Consensus 11 yIGs~iSLISk~dIRYeGiL~~In~~~sTi~L~nVrsfGTEgR~ 54 (88)
T 2vxe_A 11 ELGSKISLISKADIRYEGRLYTVDPQECTIALSSVRSFGTEDRD 54 (88)
T ss_dssp CTTCEEEEEETTTEEEEEEEEEEETTTTEEEEEEEEECCCTTTC
T ss_pred ccCCeEEEEECCCceEEEEEeeecCcccEEEEEeeeEecCcCCC
Confidence 58999999999999999999999985 48999999998766654
No 39
>3hfn_A ASL2047 protein; HFQ, SM, RNA-binding protein, sRNA, translational regulation binding protein; 2.31A {Nostoc SP}
Probab=88.43 E-value=0.94 Score=27.09 Aligned_cols=33 Identities=12% Similarity=0.262 Sum_probs=27.1
Q ss_pred HHHhhc--CCCeEEEEecCCcEEEEEEeEeCCccc
Q psy14196 8 KLLHEA--EGHIITCETTNGDLFRGKLVEAEDNMN 40 (79)
Q Consensus 8 ~lL~~~--~g~~V~VeLKnG~~y~G~L~~~D~~MN 40 (79)
..|+.. ...+|.|+|-+|..+.|++.-.|.+.=
T Consensus 14 R~lQ~~Ik~k~~V~I~L~tGd~l~G~i~WQD~~cl 48 (72)
T 3hfn_A 14 RQLQNLIKQAAPVEIKLVTGDAITGRVLWQDPTCV 48 (72)
T ss_dssp HHHHHHHSSCCEEEEEETTSCEEEEEEEEECSSEE
T ss_pred HHHHHHHhhCceEEEEecCCCEEEEEEEEECCCEE
Confidence 555654 356799999999999999999999863
No 40
>3rux_A BIRA bifunctional protein; biotin-protein ligase, ligase-ligase inhibitor complex; HET: BS5; 1.70A {Mycobacterium tuberculosis} PDB: 3l1a_A 3l2z_A 2cgh_A
Probab=83.97 E-value=2 Score=30.49 Aligned_cols=33 Identities=15% Similarity=0.163 Sum_probs=30.0
Q ss_pred cCCCeEEEEecCCcEEEEEEeEeCCccceEEee
Q psy14196 13 AEGHIITCETTNGDLFRGKLVEAEDNMNCAMAD 45 (79)
Q Consensus 13 ~~g~~V~VeLKnG~~y~G~L~~~D~~MNv~L~n 45 (79)
..|+.|+|++.+|..+.|+..++|+.-.+.++.
T Consensus 222 ~~g~~V~v~~~~~~~~~G~~~gId~~G~L~v~~ 254 (270)
T 3rux_A 222 TIGSRVRVELPGGQDVVGIARDIDDQGRLCLDV 254 (270)
T ss_dssp STTSEEEEECTTSCEEEEEEEEECTTSCEEEEE
T ss_pred ccCCEEEEEECCCeEEEEEEEEECCCCeEEEEE
Confidence 469999999988999999999999999998874
No 41
>2fb7_A SM-like protein, LSM-14_N (RAP55); DR.13312, BC055387, AAH55387, stronGly BENT five-stranded antiparallel beta- sheet, structural genomics, PSI; NMR {Danio rerio} SCOP: b.38.1.5 PDB: 2vxf_A
Probab=81.90 E-value=1.4 Score=27.66 Aligned_cols=45 Identities=18% Similarity=0.107 Sum_probs=38.1
Q ss_pred hhcCCCeEEEEecCCcEEEEEEeEeCC-ccceEEeeeEEEccCCeE
Q psy14196 11 HEAEGHIITCETTNGDLFRGKLVEAED-NMNCAMADVTVTFRDGTY 55 (79)
Q Consensus 11 ~~~~g~~V~VeLKnG~~y~G~L~~~D~-~MNv~L~n~~~~~~~G~~ 55 (79)
...+|+.|.+-.|.+--|.|.|..+|. .--+.|+||+..-.+|+.
T Consensus 15 ~~~IGs~ISLISk~dIRYeGiL~~In~~~sTiaL~nVRsfGTEgR~ 60 (95)
T 2fb7_A 15 TPYIGSKISLISKAEIRYEGILYTIDTENSTVALAKVRSFGTEDRP 60 (95)
T ss_dssp -CCSSEEEEEEETTTEEEEEEEEEEETTTTEEEEESCCCCSCCSSS
T ss_pred CcccCCeEEEEECCCceEEEEEecccCccCEEEEEeeeEecccCCC
Confidence 457899999999999999999999997 447899999988666654
No 42
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=76.78 E-value=4.1 Score=23.45 Aligned_cols=25 Identities=24% Similarity=0.441 Sum_probs=23.2
Q ss_pred CCCeEEEEecCCcEEEEEEeEeCCc
Q psy14196 14 EGHIITCETTNGDLFRGKLVEAEDN 38 (79)
Q Consensus 14 ~g~~V~VeLKnG~~y~G~L~~~D~~ 38 (79)
.|.-|.++-+||.-|-|++..+|..
T Consensus 6 ~GedVLarwsDG~fYlGtI~~V~~~ 30 (58)
T 4hcz_A 6 EGQDVLARWTDGLLYLGTIKKVDSA 30 (58)
T ss_dssp TTCEEEEECTTSCEEEEEEEEEETT
T ss_pred cCCEEEEEecCCCEEeEEEEEEecC
Confidence 5899999999999999999999876
No 43
>1ycy_A Conserved hypothetical protein; structural genomics, southeast collaboratory for structural genomics, secsg, protein structure initiative; 2.80A {Pyrococcus furiosus} SCOP: b.38.1.4
Probab=75.16 E-value=4.3 Score=24.05 Aligned_cols=42 Identities=24% Similarity=0.393 Sum_probs=32.5
Q ss_pred HHHHhhcCCCeEEEEecCCcEEEEEEeEeCCccceEEeeeEEE
Q psy14196 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVT 49 (79)
Q Consensus 7 l~lL~~~~g~~V~VeLKnG~~y~G~L~~~D~~MNv~L~n~~~~ 49 (79)
-+.|.+-.|+.|-|-.-....|+|.|..+|.-. +-|+||+-.
T Consensus 8 dktL~~WKg~rvAv~vg~ehSFtGiledFDeEv-iLL~dV~D~ 49 (71)
T 1ycy_A 8 EKVLKEWKGHKVAVSVGGDHSFTGTLEDFDEEV-ILLKDVVDV 49 (71)
T ss_dssp HHHHHHHTTSEEEEEEC----CEEEEEEECSSE-EEEEEEEET
T ss_pred HHHHHHhCCcEEEEEecCcceeeeehhhcCcce-eehhhHHHH
Confidence 367888999999999999999999999999864 668887764
No 44
>1sg5_A ORF, hypothetical protein; A+B protein, montreal-kingston bacterial structural genomics initiative, BSGI, structural genomics, transcription; NMR {Escherichia coli} SCOP: b.137.1.2
Probab=71.25 E-value=2 Score=26.21 Aligned_cols=25 Identities=16% Similarity=0.238 Sum_probs=20.8
Q ss_pred hhcCCCeEEEEecCCcEEEEEEeEe
Q psy14196 11 HEAEGHIITCETTNGDLFRGKLVEA 35 (79)
Q Consensus 11 ~~~~g~~V~VeLKnG~~y~G~L~~~ 35 (79)
-...+.+|.|+||||..+.|+....
T Consensus 21 Ac~~~~~l~l~l~dGe~~~g~a~D~ 45 (86)
T 1sg5_A 21 ACQHHLMLTLELKDGEKLQAKASDL 45 (86)
T ss_dssp HHTTTTCEEEECTTTCCEEESSCEE
T ss_pred HHHcCCeEEEEEeCCCEEEEEEEee
Confidence 3467899999999999999976644
No 45
>2wac_A CG7008-PA; unknown function, tudor, beta-barrel, nuclease domain, tudor P100, SND1, methylated arginine, SDMA, splicing; 2.10A {Drosophila melanogaster}
Probab=70.72 E-value=17 Score=23.82 Aligned_cols=49 Identities=20% Similarity=0.428 Sum_probs=34.9
Q ss_pred cCCCeEEEEec-CCcEEEEEEeEeCCccceEEeeeEEEccC-CeE---------ecCccccccccc
Q psy14196 13 AEGHIITCETT-NGDLFRGKLVEAEDNMNCAMADVTVTFRD-GTY---------YLPALVPIAGMW 67 (79)
Q Consensus 13 ~~g~~V~VeLK-nG~~y~G~L~~~D~~MNv~L~n~~~~~~~-G~~---------~lp~~l~~~p~~ 67 (79)
..|..+.+.-. +|.-|||++.++++ +.+++...| |.. .||+.|...|+.
T Consensus 53 ~~g~~c~a~~~~d~~wyRa~V~~v~~------~~~~V~~vDyG~~~~v~~~~l~~l~~~~~~~p~~ 112 (218)
T 2wac_A 53 KRGDLVAAQFTLDNQWYRAKVERVQG------SNATVLYIDYGNKETLPTNRLAALPPAFSSEKPY 112 (218)
T ss_dssp CTTCEEEEECTTTCCEEEEEEEEEET------TEEEEEETTTCCEEEEEGGGEEECCGGGSSSCCS
T ss_pred CcCCEEEEEECCCCeEEEEEEEEecC------CeEEEEEEecCCeEEEchHHcccCChhhccCCcc
Confidence 46888999886 79999999999977 344454433 543 677777666643
No 46
>2rm4_A CG6311-PB, DM EDC3; enhancer of mRNA decapping, P-BODY component, SM-like protein,, protein binding; NMR {Drosophila melanogaster}
Probab=68.83 E-value=16 Score=23.14 Aligned_cols=36 Identities=8% Similarity=0.102 Sum_probs=30.8
Q ss_pred hcCCCeEEEEecCCc-EEEEEEeEeCCccceEEeeeEE
Q psy14196 12 EAEGHIITCETTNGD-LFRGKLVEAEDNMNCAMADVTV 48 (79)
Q Consensus 12 ~~~g~~V~VeLKnG~-~y~G~L~~~D~~MNv~L~n~~~ 48 (79)
+-+|+.|+|...+.. .|.|.+..+|. -++.|.++-.
T Consensus 9 dwiG~~VSI~C~d~LGVyQG~I~~V~~-~~ItL~kaFr 45 (103)
T 2rm4_A 9 DWIGCAVSIACDEVLGVFQGLIKQISA-EEITIVRAFR 45 (103)
T ss_dssp GGTTCEEEEEECTTTCEEEEEEEEEET-TEEEEEEEEE
T ss_pred ceeceEEEEeeCCcceEeeEEEEEccc-ceeEEhhhhh
Confidence 568999999999997 99999999995 4488887755
No 47
>3uby_A DNA-3-methyladenine glycosylase; alkyladenine DNA glycosylase fold, AAG, DNA repair, DNA BIND nucleus, hydrolase-DNA complex; HET: DNA EDC; 2.00A {Homo sapiens} SCOP: b.46.1.2 PDB: 3qi5_A* 1f4r_A* 1f6o_A* 1ewn_A* 1bnk_A*
Probab=68.45 E-value=7.2 Score=27.46 Aligned_cols=33 Identities=27% Similarity=0.508 Sum_probs=29.0
Q ss_pred HHHHhhcCCCeEEEEecCCcEEEEEEeEeCCcc
Q psy14196 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNM 39 (79)
Q Consensus 7 l~lL~~~~g~~V~VeLKnG~~y~G~L~~~D~~M 39 (79)
+.+=++++|+.+.-++.+|..+.|+|++++.|+
T Consensus 17 ~~vA~~LLG~~Lv~~~~~g~~~~grIVEtEAY~ 49 (219)
T 3uby_A 17 VPLARAFLGQVLVRRLPNGTELRGRIVETEAYL 49 (219)
T ss_dssp HHHHHHTTTCEEEEECTTSCEEEEEEEEEEEEC
T ss_pred HHHHHHhCCCEEEEEcCCCCEEEEEEEEEeecc
Confidence 455567999999999999999999999999987
No 48
>2qqr_A JMJC domain-containing histone demethylation protein 3A; histone lysine demethylase, tandem hybrid tudor domains, metal binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2qqs_A* 2gfa_A* 2gf7_A*
Probab=67.87 E-value=7.1 Score=25.15 Aligned_cols=51 Identities=18% Similarity=0.376 Sum_probs=36.2
Q ss_pred cCCCeEEEEecCCcEEEEEEeEeCCccceEEeeeEEEccCCeE---ecCcccccccccc
Q psy14196 13 AEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGTY---YLPALVPIAGMWN 68 (79)
Q Consensus 13 ~~g~~V~VeLKnG~~y~G~L~~~D~~MNv~L~n~~~~~~~G~~---~lp~~l~~~p~~~ 68 (79)
.+|+.|..+-+||..|+|+++....-- =.++...||.. ..|+.+.+..+++
T Consensus 7 ~vGq~V~akh~ngryy~~~V~~~~~~~-----~y~V~F~DgS~s~dl~peDIvs~dc~~ 60 (118)
T 2qqr_A 7 TAGQKVISKHKNGRFYQCEVVRLTTET-----FYEVNFDDGSFSDNLYPEDIVSQDCLQ 60 (118)
T ss_dssp CTTCEEEEECTTSSEEEEEEEEEEEEE-----EEEEEETTSCEEEEECGGGBCSSCHHH
T ss_pred ccCCEEEEECCCCCEEeEEEEEEeeEE-----EEEEEcCCCCccCCCCHhhcccccccc
Confidence 579999999999999999999875421 11111245654 6788888877665
No 49
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=67.00 E-value=9 Score=22.66 Aligned_cols=26 Identities=23% Similarity=0.378 Sum_probs=23.7
Q ss_pred cCCCeEEEEecCCcEEEEEEeEeCCc
Q psy14196 13 AEGHIITCETTNGDLFRGKLVEAEDN 38 (79)
Q Consensus 13 ~~g~~V~VeLKnG~~y~G~L~~~D~~ 38 (79)
-.|+.|+.+=++|.-|-|++..+|..
T Consensus 11 ~eGqdVLarWsDGlfYlGtV~kV~~~ 36 (68)
T 2e5p_A 11 WEGQDVLARWTDGLLYLGTIKKVDSA 36 (68)
T ss_dssp CTTCEEEEECTTSSEEEEEEEEEETT
T ss_pred ccCCEEEEEecCCcEEEeEEEEEecC
Confidence 36899999999999999999999975
No 50
>2e12_A SM-like motif, hypothetical protein XCC3642; novel SM-like motif, LSM motif, X- RAY crystallography, translation; 1.70A {Xanthomonas campestris PV}
Probab=66.98 E-value=6 Score=24.89 Aligned_cols=25 Identities=16% Similarity=0.415 Sum_probs=19.4
Q ss_pred HHhhcCCC-eEEEEecCCcEEEEEEe
Q psy14196 9 LLHEAEGH-IITCETTNGDLFRGKLV 33 (79)
Q Consensus 9 lL~~~~g~-~V~VeLKnG~~y~G~L~ 33 (79)
++..+-|. .|.++|.+|+.++|++.
T Consensus 21 ~~~~LdGq~~v~i~l~DGs~l~GTva 46 (101)
T 2e12_A 21 WVKLLDGQERVRIELDDGSMIAGTVA 46 (101)
T ss_dssp HHHTSCTTCEEEEEETTSCEEEEEES
T ss_pred HHHhhCCeeEEEEEEcCCCeEeeeec
Confidence 33444554 69999999999999985
No 51
>2ej9_A Putative biotin ligase; biotin biosynthesis, monomer, X-RAY diffraction, structural genomics, NPPSFA; HET: BTN; 2.00A {Methanocaldococcus jannaschii}
Probab=66.19 E-value=12 Score=25.70 Aligned_cols=32 Identities=13% Similarity=0.200 Sum_probs=28.4
Q ss_pred cCCCeEEEEecCCcEEEEEEeEeCCccceEEee
Q psy14196 13 AEGHIITCETTNGDLFRGKLVEAEDNMNCAMAD 45 (79)
Q Consensus 13 ~~g~~V~VeLKnG~~y~G~L~~~D~~MNv~L~n 45 (79)
..|+.|+|+..++..+.|+..++|+.-.+. +.
T Consensus 190 ~~g~~V~v~~~~~~~~~G~~~gId~~G~L~-~~ 221 (237)
T 2ej9_A 190 TIGKQVKILLSNNEIITGKVYDIDFDGIVL-GT 221 (237)
T ss_dssp STTCEEEEEETTSCEEEEEEEEECSSEEEE-EE
T ss_pred ccCCEEEEEECCCeEEEEEEEEECCCCeEE-Ec
Confidence 479999999988887999999999998887 53
No 52
>2xk0_A Polycomb protein PCL; transcription, aromatic CAGE; NMR {Drosophila melanogaster}
Probab=64.27 E-value=12 Score=22.11 Aligned_cols=25 Identities=12% Similarity=0.294 Sum_probs=21.2
Q ss_pred hcCCCeEEEEecCCcEEEEEEeEeC
Q psy14196 12 EAEGHIITCETTNGDLFRGKLVEAE 36 (79)
Q Consensus 12 ~~~g~~V~VeLKnG~~y~G~L~~~D 36 (79)
=.+|+-|.++-+||.-|-|+++...
T Consensus 16 ~~~geDVL~rw~DG~fYLGtIVd~~ 40 (69)
T 2xk0_A 16 YALQEDVFIKCNDGRFYLGTIIDQT 40 (69)
T ss_dssp CCTTCEEEEECTTSCEEEEEEEEEC
T ss_pred cccCCeEEEEecCCCEEEEEEEecC
Confidence 3679999999999999999995433
No 53
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=63.82 E-value=3.5 Score=25.11 Aligned_cols=27 Identities=22% Similarity=0.343 Sum_probs=24.5
Q ss_pred cCCCeEEEEecCCcEEEEEEeEeCCcc
Q psy14196 13 AEGHIITCETTNGDLFRGKLVEAEDNM 39 (79)
Q Consensus 13 ~~g~~V~VeLKnG~~y~G~L~~~D~~M 39 (79)
..|+-|.++-++|.-|-|++..+|..-
T Consensus 28 ~eGeDVLarwsDGlfYLGTI~kV~~~~ 54 (79)
T 2m0o_A 28 WEGQDVLARWTDGLLYLGTIKKVDSAR 54 (79)
T ss_dssp CTTCEEEBCCTTSCCCEEEEEEEETTT
T ss_pred ccCCEEEEEecCCCEEeEEEEEeccCC
Confidence 579999999999999999999999753
No 54
>2e5q_A PHD finger protein 19; tudor domain, isoform B, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=62.66 E-value=10 Score=22.14 Aligned_cols=25 Identities=28% Similarity=0.589 Sum_probs=23.3
Q ss_pred CCCeEEEEecCCcEEEEEEeEeCCc
Q psy14196 14 EGHIITCETTNGDLFRGKLVEAEDN 38 (79)
Q Consensus 14 ~g~~V~VeLKnG~~y~G~L~~~D~~ 38 (79)
.|+-|..+=++|.-|-|++..||..
T Consensus 10 eGqdVLarWsDGlfYlgtV~kV~~~ 34 (63)
T 2e5q_A 10 EGQYVLCRWTDGLYYLGKIKRVSSS 34 (63)
T ss_dssp TTCEEEEECTTSCEEEEEECCCCST
T ss_pred cCCEEEEEecCCCEEEEEEEEEecC
Confidence 6889999999999999999999975
No 55
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=58.69 E-value=16 Score=21.41 Aligned_cols=25 Identities=16% Similarity=0.272 Sum_probs=23.0
Q ss_pred CCCeEEEEecCCcEEEEEEeEeCCc
Q psy14196 14 EGHIITCETTNGDLFRGKLVEAEDN 38 (79)
Q Consensus 14 ~g~~V~VeLKnG~~y~G~L~~~D~~ 38 (79)
.|..|...=.+|..|-|++.+++..
T Consensus 16 vGddVLA~wtDGl~Y~gtI~~V~~~ 40 (66)
T 2eqj_A 16 EGQDVLARWSDGLFYLGTIKKINIL 40 (66)
T ss_dssp TTCEEEEECTTSCEEEEEEEEEETT
T ss_pred CCCEEEEEEccCcEEEeEEEEEccC
Confidence 6889999999999999999999974
No 56
>2equ_A PHD finger protein 20-like 1; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=57.06 E-value=27 Score=20.38 Aligned_cols=36 Identities=22% Similarity=0.361 Sum_probs=28.2
Q ss_pred cCCCeEEEEecCCcEEEEEEeEeCCccceEEeeeEEEccCC
Q psy14196 13 AEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG 53 (79)
Q Consensus 13 ~~g~~V~VeLKnG~~y~G~L~~~D~~MNv~L~n~~~~~~~G 53 (79)
..|..|.-.-.||.-|++++.++++. ..+++...|+
T Consensus 11 kvGd~clA~wsDg~~Y~A~I~~v~~~-----~~~~V~f~Dy 46 (74)
T 2equ_A 11 KAGEEVLARWTDCRYYPAKIEAINKE-----GTFTVQFYDG 46 (74)
T ss_dssp CTTCEEEEECSSSSEEEEEEEEESTT-----SSEEEEETTS
T ss_pred CCCCEEEEECCCCCEEEEEEEEECCC-----CEEEEEEecC
Confidence 35888999988999999999999874 3455555566
No 57
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=57.06 E-value=20 Score=25.50 Aligned_cols=32 Identities=3% Similarity=-0.136 Sum_probs=27.7
Q ss_pred cCCCeEEEEecCCcEEEEEEeEeCCccceEEee
Q psy14196 13 AEGHIITCETTNGDLFRGKLVEAEDNMNCAMAD 45 (79)
Q Consensus 13 ~~g~~V~VeLKnG~~y~G~L~~~D~~MNv~L~n 45 (79)
..|+.|+|+..++ .+.|+..++|+.-.+.++.
T Consensus 271 ~~g~~V~v~~~~~-~~~G~~~gid~~G~L~v~~ 302 (321)
T 1bia_A 271 FINRPVKLIIGDK-EIFGISRGIDKQGALLLEQ 302 (321)
T ss_dssp TTTSEEEEEETTE-EEEEEEEEECTTSCEEEEE
T ss_pred hcCCEEEEEECCc-EEEEEEEEECCCCeEEEEE
Confidence 4799999997655 7999999999999998874
No 58
>2dxu_A Biotin--[acetyl-COA-carboxylase] ligase; biotin biosynthesis, dimer, X-RAY diffraction, structural genomics, NPPSFA; HET: BT5; 1.28A {Pyrococcus horikoshii} PDB: 2dzc_A 2ejg_A* 2e3y_A* 2e41_A* 2e64_A 2ejf_A* 2zgw_A* 1wqw_A* 1wpy_A* 1wq7_A 1wnl_A* 1x01_A* 2dkg_A* 2dth_A* 2dti_A* 2dto_A* 2fyk_A* 2djz_A* 2hni_A 2e10_A ...
Probab=54.69 E-value=10 Score=26.11 Aligned_cols=30 Identities=13% Similarity=0.067 Sum_probs=24.0
Q ss_pred CCCeEEEEecCCcEEEEEEeEeCCccceEEee
Q psy14196 14 EGHIITCETTNGDLFRGKLVEAEDNMNCAMAD 45 (79)
Q Consensus 14 ~g~~V~VeLKnG~~y~G~L~~~D~~MNv~L~n 45 (79)
.|+.|+++..++ +.|+..++|+.-.+.++.
T Consensus 188 ~g~~V~v~~~~~--~~G~~~gId~~G~L~v~~ 217 (235)
T 2dxu_A 188 LGVRVKILGDGS--FEGIAEDIDDFGRLIIRL 217 (235)
T ss_dssp CSSEEEC----C--CEEEEEEECTTSCEEEEC
T ss_pred cCCeEEEEECCe--EEEEEEEECCCCEEEEEE
Confidence 799999998877 999999999999999874
No 59
>3fdr_A Tudor and KH domain-containing protein; TDRD2, structural genomics, structural genomics consortium, SGC, alternative splicing, RNA-binding; 1.75A {Homo sapiens} SCOP: b.34.9.1
Probab=54.13 E-value=30 Score=20.12 Aligned_cols=49 Identities=22% Similarity=0.352 Sum_probs=33.4
Q ss_pred cCCCeEEEEe-cCCcEEEEEEeEeCCccceEEeeeEEEccC-CeE---------ecCcccccccc
Q psy14196 13 AEGHIITCET-TNGDLFRGKLVEAEDNMNCAMADVTVTFRD-GTY---------YLPALVPIAGM 66 (79)
Q Consensus 13 ~~g~~V~VeL-KnG~~y~G~L~~~D~~MNv~L~n~~~~~~~-G~~---------~lp~~l~~~p~ 66 (79)
..|..+.+.- .+|.-||+++.++++.- .+++...| |.. .||+.|..-|+
T Consensus 29 ~~G~~c~a~~~~d~~wyRA~I~~~~~~~-----~~~V~fvDyGn~e~v~~~~lr~l~~~f~~lP~ 88 (94)
T 3fdr_A 29 HVGDIVAAPLPTNGSWYRARVLGTLENG-----NLDLYFVDFGDNGDCPLKDLRALRSDFLSLPF 88 (94)
T ss_dssp CTTCEEEEEETTTTEEEEEEEEEECTTS-----CEEEEETTTCCEEEECGGGCEECCGGGGCSCC
T ss_pred CCCCEEEEEECCCCeEEEEEEEEECCCC-----eEEEEEEcCCCeEEEEHHHhhhcCHHHhcCCc
Confidence 4688898886 68999999999997631 23333322 432 67777766664
No 60
>2eay_A Biotin [acetyl-COA-carboxylase] ligase; biotin biosynthesis, dimer, X-RAY diffraction, structural genomics, NPPSFA; 1.95A {Aquifex aeolicus} PDB: 3efs_A* 3fjp_A 3efr_A*
Probab=50.76 E-value=11 Score=25.84 Aligned_cols=31 Identities=16% Similarity=0.147 Sum_probs=27.0
Q ss_pred cCCCeEEEEecCCcEEEEEEeEeCCccceEEee
Q psy14196 13 AEGHIITCETTNGDLFRGKLVEAEDNMNCAMAD 45 (79)
Q Consensus 13 ~~g~~V~VeLKnG~~y~G~L~~~D~~MNv~L~n 45 (79)
..|+.|+++..++ +.|+..++|+.-.+.++.
T Consensus 186 ~~g~~V~v~~~~~--~~G~~~gId~~G~L~v~~ 216 (233)
T 2eay_A 186 YLGEEVKLLGEGK--ITGKLVGLSEKGGALILT 216 (233)
T ss_dssp TTTSEEEETTEEE--EEEEEEEECTTSCEEEEE
T ss_pred ccCCEEEEEECCe--EEEEEEEECCCCeEEEEE
Confidence 4799999987666 999999999999998874
No 61
>1o9y_A HRCQ2; secretory protein, HRP, type III secretion system, phytopathogenicity; 2.29A {Pseudomonas syringae} SCOP: b.139.1.1
Probab=50.50 E-value=28 Score=20.31 Aligned_cols=35 Identities=14% Similarity=0.137 Sum_probs=29.3
Q ss_pred hcCCCeEEEEecCCcEEEEEEeEeCCccceEEeee
Q psy14196 12 EAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADV 46 (79)
Q Consensus 12 ~~~g~~V~VeLKnG~~y~G~L~~~D~~MNv~L~n~ 46 (79)
...+.+|.+...+-..++|.+..+++.+=+++.+.
T Consensus 46 ~~~~e~v~i~vng~~~~~ge~g~~~~~~avrI~~~ 80 (84)
T 1o9y_A 46 GISPGHATLCHGEQVVAEGELVDVEGRLGLQITRL 80 (84)
T ss_dssp SSCTTEEEEEETTEEEEEEEEEEETTEEEEEEEEE
T ss_pred CCCCCCEEEEECCEEEEEEEEEEECCEEEEEEEEe
Confidence 45678888888888999999999999888877653
No 62
>3uep_A YSCQ-C, type III secretion protein; cytosol, protein transport; 2.25A {Yersinia pseudotuberculosis}
Probab=50.00 E-value=26 Score=21.20 Aligned_cols=35 Identities=14% Similarity=0.164 Sum_probs=29.5
Q ss_pred hcCCCeEEEEecCCcEEEEEEeEeCCccceEEeee
Q psy14196 12 EAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADV 46 (79)
Q Consensus 12 ~~~g~~V~VeLKnG~~y~G~L~~~D~~MNv~L~n~ 46 (79)
...+.+|.|...+-..++|.+..+++.+=+.+.+.
T Consensus 50 ~~~~~~v~i~vng~~i~~Ge~g~~~~~~aVrI~~i 84 (96)
T 3uep_A 50 TPVDGEVRLLANGRLLGHGRLVEIQGRLGVRIERL 84 (96)
T ss_dssp EESSCEEEEEETTEEEEEEEEEEETTEEEEEEEEE
T ss_pred CCCCCcEEEEECCEEEEEEEEEEECCEEEEEEEEe
Confidence 44577888888888999999999999998888774
No 63
>3by7_A Uncharacterized protein; metagenomics, structural genomics, joint center for structur genomics, JCSG, protein structure initiative; 2.60A {Uncultured marine organism}
Probab=49.01 E-value=46 Score=20.74 Aligned_cols=30 Identities=13% Similarity=0.207 Sum_probs=25.1
Q ss_pred EEEecCCcEEEEEEeEeCCccceEEeeeEEEc
Q psy14196 19 TCETTNGDLFRGKLVEAEDNMNCAMADVTVTF 50 (79)
Q Consensus 19 ~VeLKnG~~y~G~L~~~D~~MNv~L~n~~~~~ 50 (79)
.++|++|.++-|.+..-|+. +.++|.-+.-
T Consensus 7 iiRlvSGEEIia~v~et~~~--i~i~nPv~V~ 36 (100)
T 3by7_A 7 IMRLVTGEDIIGNISESQGL--ITIKKAFVII 36 (100)
T ss_dssp EEEETTSCEEEEEEEEETTE--EEEEEEEEEE
T ss_pred EEEecCccceeEEEEecCce--EEEECCEEEE
Confidence 58999999999999988875 7888876653
No 64
>3v4h_A Hypothetical protein; structural genomics, center for structural genomics of infec diseases, csgid, unknown function; 2.10A {Yersinia pestis}
Probab=48.34 E-value=14 Score=25.01 Aligned_cols=43 Identities=19% Similarity=0.135 Sum_probs=31.6
Q ss_pred CchHHHHhhcCCCeE-EEEecCCcEEEEEEeEeCCccceEEeeeEEEc
Q psy14196 4 GIPIKLLHEAEGHII-TCETTNGDLFRGKLVEAEDNMNCAMADVTVTF 50 (79)
Q Consensus 4 ~~Pl~lL~~~~g~~V-~VeLKnG~~y~G~L~~~D~~MNv~L~n~~~~~ 50 (79)
..|+=+-..+.|+.+ .++++.-+. .|. -..|+.+.|+||.+++
T Consensus 89 aSP~L~~a~~~Ge~l~~v~i~~~R~-gG~---~~~Y~~i~L~~v~Iss 132 (185)
T 3v4h_A 89 ASPNLLSYCLLGKHIKNVQFVLRKA-GGD---PLEYLTIKFTDVIITR 132 (185)
T ss_dssp THHHHHHHHHHTCCEEEEEEEEEC--------CCEEEEEEEEEEEEEE
T ss_pred chHHHHHHHhCCCccCcEEEEEEEC-CCC---eEEEEEEEEEeEEEEE
Confidence 456656666789988 899888776 664 5789999999999985
No 65
>2diq_A Tudor and KH domain-containing protein; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=47.10 E-value=25 Score=21.13 Aligned_cols=50 Identities=20% Similarity=0.338 Sum_probs=32.9
Q ss_pred cCCCeEEEEec-CCcEEEEEEeEeCCccceEEeeeEEEccC-CeE---------ecCccccccccc
Q psy14196 13 AEGHIITCETT-NGDLFRGKLVEAEDNMNCAMADVTVTFRD-GTY---------YLPALVPIAGMW 67 (79)
Q Consensus 13 ~~g~~V~VeLK-nG~~y~G~L~~~D~~MNv~L~n~~~~~~~-G~~---------~lp~~l~~~p~~ 67 (79)
..|..+.+.-. +|.-||+++.++++. ..+++...| |.. .||+.|...|++
T Consensus 34 ~~G~~c~a~~~~d~~wyRA~V~~~~~~-----~~~~V~fvDyGn~e~v~~~~Lr~l~~~f~~lP~q 94 (110)
T 2diq_A 34 HVGDIVAAPLPTNGSWYRARVLGTLEN-----GNLDLYFVDFGDNGDCPLKDLRALRSDFLSLPFQ 94 (110)
T ss_dssp CTTCEEEECCTTTCSCEEEEECCCCSS-----SCEEEEETTTCCEEEECGGGCEECCHHHHSSCCS
T ss_pred CCCCEEEEEECCCCeEEEEEEEEECCC-----CeEEEEEEeCCCeEEEehHHhhcCcHHHhCCCcc
Confidence 36888888774 899999999999863 233333322 432 667666666654
No 66
>3rkx_A Biotin-[acetyl-COA-carboxylase] ligase; biotin protein ligase, 3 domains, enzyme DNA binding, biotin coupling domains; 2.10A {Staphylococcus aureus} PDB: 3rir_A* 3rkw_A 3rky_A* 3v7c_A* 3v7s_A* 3v8j_A 3v7r_A 3v8k_A* 3v8l_A* 4dq2_A*
Probab=45.30 E-value=33 Score=24.62 Aligned_cols=32 Identities=9% Similarity=0.180 Sum_probs=27.0
Q ss_pred cCCCeEEEEecCCcEEEEEEeEeCCccceEEee
Q psy14196 13 AEGHIITCETTNGDLFRGKLVEAEDNMNCAMAD 45 (79)
Q Consensus 13 ~~g~~V~VeLKnG~~y~G~L~~~D~~MNv~L~n 45 (79)
..|+.|+|... +..+.|+..++|+.-.+.+++
T Consensus 277 ~~g~~V~v~~~-~~~~~G~~~gId~~G~Llv~~ 308 (323)
T 3rkx_A 277 IWNRTLLFTEN-DKQFKGQAIDLDYDGYLIVRD 308 (323)
T ss_dssp CSSSCEEEECC--CEEEEEEEEECTTSCEEEEE
T ss_pred hcCCEEEEEEC-CeEEEEEEEEECCCCEEEEEE
Confidence 57999999865 567999999999999999874
No 67
>1nvp_D Transcription initiation factor IIA gamma chain; transcription regulation, DNA, complex, transcription/DNA complex; 2.10A {Homo sapiens} SCOP: a.32.1.1 b.56.1.1
Probab=42.78 E-value=32 Score=21.64 Aligned_cols=29 Identities=24% Similarity=0.251 Sum_probs=22.7
Q ss_pred ecCCcEEEEEE---eEeCCccceEEeeeEEEc
Q psy14196 22 TTNGDLFRGKL---VEAEDNMNCAMADVTVTF 50 (79)
Q Consensus 22 LKnG~~y~G~L---~~~D~~MNv~L~n~~~~~ 50 (79)
+|+...++|.| ..||+-+.+.|+|++...
T Consensus 51 vksk~sfKG~L~tYrfcDnVWTf~lkd~~fk~ 82 (108)
T 1nvp_D 51 VRNRVNFRGSLNTYRFCDNVWTFVLNDVEFRE 82 (108)
T ss_dssp CCCEEEEEEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred hccCCeEeeccCCccccCcEEEEEEeceEEEe
Confidence 44556677766 478999999999999974
No 68
>1zq1_A Glutamyl-tRNA(Gln) amidotransferase subunit D; X-RAY, 3D structure, asparaginase 1 family, GATD subfamily, lyase; 3.00A {Pyrococcus abyssi} SCOP: b.38.3.1 c.88.1.1
Probab=41.20 E-value=20 Score=27.37 Aligned_cols=28 Identities=14% Similarity=0.338 Sum_probs=23.5
Q ss_pred HHHHhhcC---CCeEEEEecCC---cEEEEEEeE
Q psy14196 7 IKLLHEAE---GHIITCETTNG---DLFRGKLVE 34 (79)
Q Consensus 7 l~lL~~~~---g~~V~VeLKnG---~~y~G~L~~ 34 (79)
.++|.+.- |..|.|+.++| .+|.|.|.-
T Consensus 4 ~~~~~~~~~~~gd~v~~~~~~~~~~~~~~g~~~~ 37 (438)
T 1zq1_A 4 DEFLKERNINVGDFVRITKEEDGEEVTYEGYIMP 37 (438)
T ss_dssp HHHHHHTTCCTTCEEEEEEESSSSEEECCEEECC
T ss_pred HHHHHhcCCCCCCEEEEEECCCcceeEEEEEEec
Confidence 45677655 99999999998 899999993
No 69
>3bfm_A Biotin protein ligase-like protein of unknown FUN; structural genomics, joint center for structural genomics, J protein structure initiative; HET: 2PE; 1.70A {Silicibacter SP}
Probab=40.69 E-value=42 Score=22.75 Aligned_cols=28 Identities=18% Similarity=0.345 Sum_probs=24.5
Q ss_pred cCCCeEEEEecCCcEEEEEEeEeCCccceEEee
Q psy14196 13 AEGHIITCETTNGDLFRGKLVEAEDNMNCAMAD 45 (79)
Q Consensus 13 ~~g~~V~VeLKnG~~y~G~L~~~D~~MNv~L~n 45 (79)
..|+.|+| +| +.|+..++|+.-.+.++.
T Consensus 192 ~~g~~V~v---~~--~~G~~~gId~~G~L~v~~ 219 (235)
T 3bfm_A 192 GMGEARTE---AG--RSGTFLGVDEDFGMLLRD 219 (235)
T ss_dssp TTTSEEEE---TT--EEEEEEEECTTCCEEEEC
T ss_pred hcCCEEEE---Ee--EEEEEEEECCCCeEEEEe
Confidence 57999999 45 999999999999999864
No 70
>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A
Probab=39.55 E-value=41 Score=25.10 Aligned_cols=31 Identities=19% Similarity=0.442 Sum_probs=27.1
Q ss_pred CeEEEEecCCcEEEEEEeEeCCccceEEeee
Q psy14196 16 HIITCETTNGDLFRGKLVEAEDNMNCAMADV 46 (79)
Q Consensus 16 ~~V~VeLKnG~~y~G~L~~~D~~MNv~L~n~ 46 (79)
..+.|.+.+|..|.+++...|...++.+=.+
T Consensus 111 ~~i~V~~~dg~~~~a~vv~~d~~~DlAvlkv 141 (448)
T 1ky9_A 111 TVIKVQLSDGRKFDAKMVGKDPRSDIALIQI 141 (448)
T ss_dssp EEEEEEETTSCEEEEEEEEEETTTTEEEEEE
T ss_pred CEEEEEECCCCEEEEEEEEEcCCCCEEEEEe
Confidence 4688999999999999999999999887554
No 71
>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A
Probab=39.53 E-value=45 Score=24.67 Aligned_cols=31 Identities=23% Similarity=0.471 Sum_probs=27.3
Q ss_pred CeEEEEecCCcEEEEEEeEeCCccceEEeee
Q psy14196 16 HIITCETTNGDLFRGKLVEAEDNMNCAMADV 46 (79)
Q Consensus 16 ~~V~VeLKnG~~y~G~L~~~D~~MNv~L~n~ 46 (79)
..+.|.+.+|..|.+++...|...++.|=.+
T Consensus 88 ~~i~V~~~dg~~~~a~vv~~d~~~DlAllkv 118 (436)
T 4a8c_A 88 QKISIQLNDGREFDAKLIGSDDQSDIALLQI 118 (436)
T ss_pred CEEEEEeCCCCEEEEEEEEEcCCCCEEEEEe
Confidence 4789999999999999999999998877654
No 72
>1nh2_D Transcription initiation factor IIA small chain; transcription/DNA; HET: 5IU; 1.90A {Saccharomyces cerevisiae} SCOP: a.32.1.1 b.56.1.1 PDB: 1ytf_D* 1rm1_B
Probab=39.24 E-value=38 Score=21.78 Aligned_cols=30 Identities=20% Similarity=0.195 Sum_probs=23.9
Q ss_pred ecCCcEEEEEE---eEeCCccceEEeeeEEEcc
Q psy14196 22 TTNGDLFRGKL---VEAEDNMNCAMADVTVTFR 51 (79)
Q Consensus 22 LKnG~~y~G~L---~~~D~~MNv~L~n~~~~~~ 51 (79)
+|+...++|.| ..||+-+.+.|+|+++...
T Consensus 55 vksk~sfKG~L~tYrfcDnVWtfilkd~~fk~~ 87 (121)
T 1nh2_D 55 TQSKLTVKGNLDTYGFCDDVWTFIVKNCQVTVE 87 (121)
T ss_dssp CCCEEEEEEEEEEEEEETTEEEEEEEEEEEEEE
T ss_pred hccCCeEEeeeccccccCcEEEEEEeceEEEec
Confidence 45667777887 4689999999999998743
No 73
>3tee_A Flagella basal BODY P-ring formation protein FLGA; chaperone, flagellar P-ring formation, flagellar FLGI protei periplasmic protein; 1.95A {Salmonella typhimurium}
Probab=39.23 E-value=24 Score=24.30 Aligned_cols=23 Identities=17% Similarity=0.257 Sum_probs=20.2
Q ss_pred hcCCCeEEEEecCCcEEEEEEeE
Q psy14196 12 EAEGHIITCETTNGDLFRGKLVE 34 (79)
Q Consensus 12 ~~~g~~V~VeLKnG~~y~G~L~~ 34 (79)
...|..|.|++.+|.+++|++.+
T Consensus 168 G~~Gd~IrVr~~Sgkiv~g~V~~ 190 (219)
T 3tee_A 168 AAVAQNARVRMTSGQIVSGTVDS 190 (219)
T ss_dssp BCTTSEEEEEETTSCEEEEEECT
T ss_pred cCCCCEEEEECCCCCEEEEEEec
Confidence 47899999999999999998764
No 74
>1o6a_A Putative flagellar motor switch protein FLIN; C- terminal PR fragment, structural genomics, joint center for structural JCSG; 1.85A {Thermotoga maritima} SCOP: b.139.1.1 PDB: 1yab_A
Probab=38.18 E-value=45 Score=19.92 Aligned_cols=35 Identities=14% Similarity=0.328 Sum_probs=28.4
Q ss_pred hcCCCeEEEEecCCcEEEEEEeEeCCccceEEeee
Q psy14196 12 EAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADV 46 (79)
Q Consensus 12 ~~~g~~V~VeLKnG~~y~G~L~~~D~~MNv~L~n~ 46 (79)
...+.+|.|...+-..++|.+..+++.+=+.+.+.
T Consensus 50 ~~~~~~v~v~v~g~~i~~G~~g~~~~~~aVrI~~~ 84 (96)
T 1o6a_A 50 KLTGEPVDILVNGKLIARGEVVVIDENFGVRITEI 84 (96)
T ss_dssp EETTCCEEEEETTEEEEEEEEEEETTEEEEEEEEE
T ss_pred CCCCCcEEEEECCEEEEEEEEEEECCEEEEEEEEe
Confidence 34567788887788899999999999888887664
No 75
>1v6z_A Hypothetical protein TTHA0657; structural genomics, riken structural genomics/proteomics initiative, RSGI, transferase; 2.00A {Thermus thermophilus HB8} SCOP: b.122.1.2 c.116.1.5 PDB: 2cx8_A* 2z0y_A*
Probab=37.16 E-value=28 Score=23.90 Aligned_cols=38 Identities=11% Similarity=0.010 Sum_probs=30.1
Q ss_pred HHHhhcCCCeEEEEecCCcEEEEEEeEeCCccceEEeeeEE
Q psy14196 8 KLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTV 48 (79)
Q Consensus 8 ~lL~~~~g~~V~VeLKnG~~y~G~L~~~D~~MNv~L~n~~~ 48 (79)
++|+--.|..|.|---+| .|.+++..++. .+.++=...
T Consensus 25 ~VlRl~~Gd~v~l~dg~g-~~~a~i~~~~~--~~~~~i~~~ 62 (228)
T 1v6z_A 25 EVLRARVGDRFTVFDGER-EALAEVVDLGP--PLRYRVLEE 62 (228)
T ss_dssp TTSCCCTTCEEEEECSSC-EEEEEEEECCS--SCEEEEEEE
T ss_pred HhccCCCCCEEEEEeCCc-EEEEEEEECCC--eEEEEEEEE
Confidence 567778899999887889 99999999998 665544333
No 76
>3bmb_A Regulator of nucleoside diphosphate kinase; RNA polymerase, elongation factor, anti-GRE factor, RNA binding protein; 1.91A {Escherichia coli}
Probab=34.48 E-value=68 Score=20.11 Aligned_cols=35 Identities=29% Similarity=0.293 Sum_probs=27.2
Q ss_pred CcCchH--HHHhhcCCCeEEEEecCCcEEEEEEeEeC
Q psy14196 2 SIGIPI--KLLHEAEGHIITCETTNGDLFRGKLVEAE 36 (79)
Q Consensus 2 ~~~~Pl--~lL~~~~g~~V~VeLKnG~~y~G~L~~~D 36 (79)
|+..|+ .+|.+..|..|.+.+.+|..+.=++..+.
T Consensus 89 S~~SPlG~ALlGk~~GD~v~v~~p~G~~~~~~I~~I~ 125 (136)
T 3bmb_A 89 SVMAPVGAALLGLRVGDSIHWELPGGVATHLEVLELE 125 (136)
T ss_dssp ETTSHHHHHHTTCBTTCEEEEEETTTEEEEEEEEEEE
T ss_pred cCCCHHHHHHcCCCCCCEEEEEcCCCCEEEEEEEEEE
Confidence 456677 78999999999999999955555666554
No 77
>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone, DEGP, DEGQ hydrolase; 2.60A {Escherichia coli}
Probab=34.44 E-value=52 Score=23.62 Aligned_cols=31 Identities=23% Similarity=0.471 Sum_probs=26.5
Q ss_pred CeEEEEecCCcEEEEEEeEeCCccceEEeee
Q psy14196 16 HIITCETTNGDLFRGKLVEAEDNMNCAMADV 46 (79)
Q Consensus 16 ~~V~VeLKnG~~y~G~L~~~D~~MNv~L~n~ 46 (79)
..+.|.+.+|..|.+++...|...++.|=.+
T Consensus 88 ~~i~V~~~dg~~~~a~vv~~d~~~DlAlLkv 118 (345)
T 3stj_A 88 QKISIQLNDGREFDAKLIGSDDQSDIALLQI 118 (345)
T ss_dssp EEEEEECTTSCEEEEEEEEEETTTTEEEEEE
T ss_pred CEEEEEeCCCcEEEEEEEEEcCCCCEEEEEE
Confidence 3688999999999999999999988776543
No 78
>3sti_A Protease DEGQ; serine protease, PDZ domain, chaperone, hydrolase; 2.60A {Escherichia coli}
Probab=33.82 E-value=50 Score=22.58 Aligned_cols=31 Identities=23% Similarity=0.471 Sum_probs=26.0
Q ss_pred CeEEEEecCCcEEEEEEeEeCCccceEEeee
Q psy14196 16 HIITCETTNGDLFRGKLVEAEDNMNCAMADV 46 (79)
Q Consensus 16 ~~V~VeLKnG~~y~G~L~~~D~~MNv~L~n~ 46 (79)
..+.|.+.+|..|.+++...|...++.|=.+
T Consensus 88 ~~i~V~~~dg~~~~a~vv~~d~~~DlAlLkv 118 (245)
T 3sti_A 88 QKISIQLNDGREFDAKLIGSDDQSDIALLQI 118 (245)
T ss_dssp -CEEEECTTSCEEEEEEEEEETTTTEEEEEE
T ss_pred CEEEEEECCCCEEEEEEEEecCCCCEEEEEe
Confidence 4688999999999999999999888776543
No 79
>4b9w_A TDRD1, tudor domain-containing protein 1; replication; HET: 2MR; 2.10A {Mus musculus}
Probab=33.37 E-value=1e+02 Score=20.16 Aligned_cols=50 Identities=20% Similarity=0.211 Sum_probs=33.6
Q ss_pred cCCCeEEEEec-CCcEEEEEEeEeCCccceEEeeeEEEccC-CeE---------ecCccccccccc
Q psy14196 13 AEGHIITCETT-NGDLFRGKLVEAEDNMNCAMADVTVTFRD-GTY---------YLPALVPIAGMW 67 (79)
Q Consensus 13 ~~g~~V~VeLK-nG~~y~G~L~~~D~~MNv~L~n~~~~~~~-G~~---------~lp~~l~~~p~~ 67 (79)
..|..+.+.-. +|.-|||++.++.+.-+ +++...| |.. .||+.|...|++
T Consensus 67 ~~G~~c~a~~~~d~~wyRa~V~~~~~~~~-----~~V~~vDyG~~~~v~~~~l~~l~~~f~~lP~q 127 (201)
T 4b9w_A 67 EIGRPCCAFFSGDGNWYRALVKEILPSGN-----VKVHFVDYGNVEEVTTDQLQAILPQFLLLPFQ 127 (201)
T ss_dssp CTTCEEEEEETTTTEEEEEEEEEECTTSC-----EEEEETTTCCEEEECGGGEEECCGGGGSSCBC
T ss_pred CCCCEEEEEECCCCeEEEEEEEEECCCCe-----EEEEEEccCCEEEEEHHHhccChHhHcccchh
Confidence 35888888875 89999999999865422 3333322 432 788888777754
No 80
>3tjo_A Serine protease HTRA1; peptidase, hydrolase; HET: BOG; 2.30A {Homo sapiens} PDB: 3tjn_A 3nwu_A
Probab=33.34 E-value=66 Score=21.43 Aligned_cols=32 Identities=19% Similarity=0.466 Sum_probs=27.0
Q ss_pred CCeEEEEecCCcEEEEEEeEeCCccceEEeee
Q psy14196 15 GHIITCETTNGDLFRGKLVEAEDNMNCAMADV 46 (79)
Q Consensus 15 g~~V~VeLKnG~~y~G~L~~~D~~MNv~L~n~ 46 (79)
...+.|.+.+|..|.+++..+|...++.|=.+
T Consensus 86 ~~~i~V~~~~g~~~~a~v~~~d~~~DlAlL~l 117 (231)
T 3tjo_A 86 KHRVKVELKNGATYEAKIKDVDEKADIALIKI 117 (231)
T ss_dssp SSEEEEECTTSCEEEEEEEEEETTTTEEEEEC
T ss_pred CceEEEEcCCCCEEEEEEEEecCCCCEEEEEe
Confidence 35789999999999999999999888776543
No 81
>3dgp_B RNA polymerase II transcription factor B subunit; protein-protein complex, beta-alpha-beta spilt, heterodimer, damage, DNA excision; 1.80A {Saccharomyces cerevisiae} SCOP: d.295.1.0 PDB: 3dom_B
Probab=33.02 E-value=16 Score=21.53 Aligned_cols=14 Identities=21% Similarity=0.458 Sum_probs=11.8
Q ss_pred cEEEEEEeEeCCcc
Q psy14196 26 DLFRGKLVEAEDNM 39 (79)
Q Consensus 26 ~~y~G~L~~~D~~M 39 (79)
+.++|.|+.||.-|
T Consensus 2 ~A~kGvLi~CDpa~ 15 (71)
T 3dgp_B 2 RARKGALVQCDPSI 15 (71)
T ss_dssp EEEEEEEEECCHHH
T ss_pred CceeEEEEEcCHHH
Confidence 35799999999876
No 82
>1q38_A Fibronectin; amyloid fibril, anastellin, extracellular matrix, dynamic fluctuations, conformational exchange, chaps, cell adhesion; NMR {Homo sapiens} SCOP: b.1.2.1
Probab=32.96 E-value=47 Score=20.41 Aligned_cols=31 Identities=13% Similarity=0.246 Sum_probs=24.3
Q ss_pred ecCCcEEEEEEeEeCCccceEEeeeEEEccC
Q psy14196 22 TTNGDLFRGKLVEAEDNMNCAMADVTVTFRD 52 (79)
Q Consensus 22 LKnG~~y~G~L~~~D~~MNv~L~n~~~~~~~ 52 (79)
||-|.+|.|.|.++-.+-+=.-.--..+...
T Consensus 45 LkPGvtYegQLisV~r~g~~EvtrfdfTT~~ 75 (89)
T 1q38_A 45 LKPGVVYEGQLISIQQYGHQEVTRFDFTTTS 75 (89)
T ss_dssp CCTTCCEEEEEEEECTTSCCCEEEEEECSSS
T ss_pred cCCCcEEEEEEEeeeecccCCceEEEEEecc
Confidence 7889999999999999988666655555433
No 83
>4b9x_A TDRD1, tudor domain-containing protein 1; replication; 2.80A {Mus musculus}
Probab=32.85 E-value=1.1e+02 Score=20.42 Aligned_cols=50 Identities=18% Similarity=0.200 Sum_probs=34.2
Q ss_pred cCCCeEEEEec-CCcEEEEEEeEeCCccceEEeeeEEEccC-CeE---------ecCccccccccc
Q psy14196 13 AEGHIITCETT-NGDLFRGKLVEAEDNMNCAMADVTVTFRD-GTY---------YLPALVPIAGMW 67 (79)
Q Consensus 13 ~~g~~V~VeLK-nG~~y~G~L~~~D~~MNv~L~n~~~~~~~-G~~---------~lp~~l~~~p~~ 67 (79)
..|..+.+.-. +|.-|||++.+++..- .+++...| |.. .||+.|...|+.
T Consensus 67 ~~G~~c~a~~~~d~~WyRa~V~~~~~~~-----~~~V~~vDyGn~~~v~~~~l~~l~~~f~~lP~q 127 (226)
T 4b9x_A 67 EIGRPCCAFFSGDGNWYRALVKEILPSG-----NVKVHFVDYGNVEEVTTDQLQAILPQFLLLPFQ 127 (226)
T ss_dssp CTTCEEEEEETTTTEEEEEEEEEECSSS-----EEEEECTTTCCEEEEEGGGEECCCGGGSSSCBC
T ss_pred CCCCEEEEEECCCCeEEEEEEEEECCCC-----eEEEEEEecCCEEEEEHHHhccChHHHcccccc
Confidence 36888888875 8999999999986542 23444333 432 778887777754
No 84
>2pn0_A Prokaryotic transcription elongation factor GREA/GREB; structural genomics, APC6349, PSI-2, protein structure initiative; HET: MSE; 1.70A {Nitrosomonas europaea}
Probab=31.17 E-value=65 Score=20.44 Aligned_cols=35 Identities=34% Similarity=0.486 Sum_probs=28.0
Q ss_pred CcCchH--HHHhhcCCCeEEEEecCCcEEEEEEeEeC
Q psy14196 2 SIGIPI--KLLHEAEGHIITCETTNGDLFRGKLVEAE 36 (79)
Q Consensus 2 ~~~~Pl--~lL~~~~g~~V~VeLKnG~~y~G~L~~~D 36 (79)
|+..|+ .+|.+..|..|.+.+.+|..++=++..+.
T Consensus 92 S~~SPlG~ALlGk~vGD~v~v~~P~G~~~~~~I~~I~ 128 (141)
T 2pn0_A 92 SILAPVGSALLGLAQGDEIEWPKPGGGVLRVRIVEVT 128 (141)
T ss_dssp ETTSTTHHHHTTCBTTCEEEEECTTSSEEEEEEEEEE
T ss_pred cCCCHHHHHHcCCCCCCEEEEEcCCCCEEEEEEEEEE
Confidence 445666 78999999999999999966666777765
No 85
>4a4f_A SurviVal of motor neuron-related-splicing factor; RNA binding protein; HET: 2MR; NMR {Homo sapiens} PDB: 4a4h_A*
Probab=30.71 E-value=70 Score=17.51 Aligned_cols=25 Identities=12% Similarity=0.274 Sum_probs=21.7
Q ss_pred cCCCeEEEEe-cCCcEEEEEEeEeCC
Q psy14196 13 AEGHIITCET-TNGDLFRGKLVEAED 37 (79)
Q Consensus 13 ~~g~~V~VeL-KnG~~y~G~L~~~D~ 37 (79)
..|..+.... .||.-|++++.+++.
T Consensus 10 ~vGd~c~A~~s~Dg~wYrA~I~~v~~ 35 (64)
T 4a4f_A 10 KVGDKCMAVWSEDGQCYEAEIEEIDE 35 (64)
T ss_dssp CTTCEEEEECTTTSSEEEEEEEEEET
T ss_pred CCCCEEEEEECCCCCEEEEEEEEEcC
Confidence 4688889998 599999999999985
No 86
>3lgi_A Protease DEGS; stress-sensor, HTRA, PDZ OMP, hydrolase, serine PR; 1.65A {Escherichia coli} PDB: 2qf3_A 2qf0_A 2rce_A* 3lh3_A* 3b8j_A 2qgr_A 3lh1_A 3lgy_A 3lgu_A 3lgv_A 3lgw_A 3lgt_A 2r3u_A
Probab=30.70 E-value=75 Score=21.10 Aligned_cols=31 Identities=19% Similarity=0.336 Sum_probs=26.3
Q ss_pred CeEEEEecCCcEEEEEEeEeCCccceEEeee
Q psy14196 16 HIITCETTNGDLFRGKLVEAEDNMNCAMADV 46 (79)
Q Consensus 16 ~~V~VeLKnG~~y~G~L~~~D~~MNv~L~n~ 46 (79)
..+.|.+.+|..|.+++..+|...++.|=.+
T Consensus 77 ~~~~V~~~~g~~~~a~vv~~d~~~DlAll~l 107 (237)
T 3lgi_A 77 DQIIVALQDGRVFEALLVGSDSLTDLAVLKI 107 (237)
T ss_dssp SEEEEECTTSCEEEEEEEEEETTTTEEEEEC
T ss_pred CEEEEEeCCCCEEEEEEEEEcCCCCEEEEEe
Confidence 5788999999999999999999887766543
No 87
>2d6f_A Glutamyl-tRNA(Gln) amidotransferase subunit D; ligase, ligase/RNA complex; 3.15A {Methanothermobacterthermautotrophicus} SCOP: b.38.3.1 c.88.1.1
Probab=30.22 E-value=50 Score=25.16 Aligned_cols=29 Identities=21% Similarity=0.438 Sum_probs=23.2
Q ss_pred chHHHHhhcC---CCeEEEEecCCcEEEEEEeE
Q psy14196 5 IPIKLLHEAE---GHIITCETTNGDLFRGKLVE 34 (79)
Q Consensus 5 ~Pl~lL~~~~---g~~V~VeLKnG~~y~G~L~~ 34 (79)
.-.++|.+.. |..|.|+.++ .+|.|.|.-
T Consensus 6 ~~~~~~~~~~~~~gd~~~~~~~~-~~~~g~~~~ 37 (435)
T 2d6f_A 6 RARKFLESASIDVGDMVLVEKPD-VTYEGMVLD 37 (435)
T ss_dssp HHHHHHHTTTCCTTCEEEEECSS-CEEEEEECC
T ss_pred HHHHHHHHcCCCCCCEEEEEECC-eEEEEEEec
Confidence 3456777665 9999999777 999999994
No 88
>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A
Probab=29.79 E-value=51 Score=24.59 Aligned_cols=31 Identities=16% Similarity=0.424 Sum_probs=27.1
Q ss_pred CeEEEEecCCcEEEEEEeEeCCccceEEeee
Q psy14196 16 HIITCETTNGDLFRGKLVEAEDNMNCAMADV 46 (79)
Q Consensus 16 ~~V~VeLKnG~~y~G~L~~~D~~MNv~L~n~ 46 (79)
..+.|.+.+|..|.+++...|...++.|=.+
T Consensus 102 ~~i~V~~~dg~~~~a~vv~~d~~~DlAlLkv 132 (451)
T 3pv2_A 102 SLITVTLQDGRRLKARLIGGDSETDLAVLKI 132 (451)
T ss_dssp EEEEEECTTSCEEECEEEEEETTTTEEEEEC
T ss_pred CEEEEEEcCCCEEEEEEEecCcCCcEEEEEE
Confidence 3688999999999999999999988877654
No 89
>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation, binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4 b.47.1.1
Probab=29.06 E-value=77 Score=22.26 Aligned_cols=31 Identities=10% Similarity=0.213 Sum_probs=26.4
Q ss_pred CeEEEEecCCcEEEEEEeEeCCccceEEeee
Q psy14196 16 HIITCETTNGDLFRGKLVEAEDNMNCAMADV 46 (79)
Q Consensus 16 ~~V~VeLKnG~~y~G~L~~~D~~MNv~L~n~ 46 (79)
..+.|.+.+|..|.+++..+|...++.|=.+
T Consensus 71 ~~i~V~~~~g~~~~a~v~~~d~~~DlAllkl 101 (325)
T 1lcy_A 71 RRVRVRLLSGDTYEAVVTAVDPVADIATLRI 101 (325)
T ss_dssp SEEEEECTTSCEEEEEEEEEETTTTEEEEEC
T ss_pred CEEEEEeCCCCEEEEEEEEECCCCCEEEEEE
Confidence 4789999999999999999998888776544
No 90
>3kl9_A PEPA, glutamyl aminopeptidase; tetrahedral aminopeptidase, S specificity, metallopeptidase M42, hydrolas; 2.70A {Streptococcus pneumoniae}
Probab=28.94 E-value=50 Score=23.97 Aligned_cols=25 Identities=8% Similarity=-0.112 Sum_probs=20.2
Q ss_pred hhcCCCeEEEEecCCcEEEEEEeEe
Q psy14196 11 HEAEGHIITCETTNGDLFRGKLVEA 35 (79)
Q Consensus 11 ~~~~g~~V~VeLKnG~~y~G~L~~~ 35 (79)
+-+.|+.|+|..++|..|.|.+-..
T Consensus 95 ~~~~~~~v~i~t~~g~~~~Gvig~~ 119 (355)
T 3kl9_A 95 MVVSSQRFKLLTRDGHEIPVISGSV 119 (355)
T ss_dssp TTCSSCEEEEECTTSCEEEEEEC--
T ss_pred cccCCCEEEEEcCCCCEEEEEEeCc
Confidence 3468999999999999999998654
No 91
>3frn_A Flagellar protein FLGA; structural genomics, periplasmic, PSI-2, protein structure initiative; 2.05A {Thermotoga maritima}
Probab=28.70 E-value=41 Score=24.42 Aligned_cols=23 Identities=9% Similarity=0.130 Sum_probs=18.5
Q ss_pred hcCCCeEEEE-ecCCcEEEEEEeE
Q psy14196 12 EAEGHIITCE-TTNGDLFRGKLVE 34 (79)
Q Consensus 12 ~~~g~~V~Ve-LKnG~~y~G~L~~ 34 (79)
.+.|..|.|+ +.+|.+++|++.+
T Consensus 237 Ga~Gd~IRVrNl~SgkiV~G~V~~ 260 (278)
T 3frn_A 237 GYLGETVRAMNVESRKYVFGRVER 260 (278)
T ss_dssp BCTTCEEEEEC--CCCEEEEEEET
T ss_pred CCCCCEEEEEECCCCCEEEEEEec
Confidence 4789999999 9999999998763
No 92
>2egv_A UPF0088 protein AQ_165; RSME, methyltransferase, rRNA modification, PUA domain, M3U, SAM, structural genomics, NPPSFA; HET: SAM; 1.45A {Aquifex aeolicus} PDB: 2egw_A*
Probab=27.51 E-value=64 Score=22.03 Aligned_cols=30 Identities=7% Similarity=0.191 Sum_probs=26.4
Q ss_pred HHHhhcCCCeEEEEecCCcEEEEEEeEeCCc
Q psy14196 8 KLLHEAEGHIITCETTNGDLFRGKLVEAEDN 38 (79)
Q Consensus 8 ~lL~~~~g~~V~VeLKnG~~y~G~L~~~D~~ 38 (79)
++|+--.|..|.| --+|..|.+++..++..
T Consensus 25 ~VlRl~~Gd~v~l-dg~g~~~~a~i~~~~~~ 54 (229)
T 2egv_A 25 RVRRIEKDEEFGV-IHEGKIYVCKVRREDKR 54 (229)
T ss_dssp HHTTCCTTCCEEE-EETTEEEEEEEEEECSS
T ss_pred HhhcCCCCCEEEE-eCCCCEEEEEEEEecCC
Confidence 6788889999999 77899999999998864
No 93
>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha-beta protein, hydro; 2.20A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A* 1sot_A 1soz_A 1vcw_A 2r3y_A
Probab=27.02 E-value=85 Score=21.86 Aligned_cols=31 Identities=19% Similarity=0.290 Sum_probs=26.4
Q ss_pred CeEEEEecCCcEEEEEEeEeCCccceEEeee
Q psy14196 16 HIITCETTNGDLFRGKLVEAEDNMNCAMADV 46 (79)
Q Consensus 16 ~~V~VeLKnG~~y~G~L~~~D~~MNv~L~n~ 46 (79)
..+.|.+.+|..|.+++..+|...++.|=.+
T Consensus 66 ~~i~V~~~~g~~~~a~v~~~d~~~DlAllk~ 96 (318)
T 1te0_A 66 DQIIVALQDGRVFEALLVGSDSLTDLAVLII 96 (318)
T ss_dssp SEEEEECTTSCEEEEEEEEEETTTTEEEEEC
T ss_pred CEEEEEeCCCCEEEEEEEEeCCCceEEEEEE
Confidence 3688999999999999999999888877544
No 94
>2xdp_A Lysine-specific demethylase 4C; oxidoreductase, histone modification; 1.56A {Homo sapiens}
Probab=26.91 E-value=87 Score=20.06 Aligned_cols=25 Identities=24% Similarity=0.476 Sum_probs=21.6
Q ss_pred cCCCeEEEEecCCcEEEEEEeEeCC
Q psy14196 13 AEGHIITCETTNGDLFRGKLVEAED 37 (79)
Q Consensus 13 ~~g~~V~VeLKnG~~y~G~L~~~D~ 37 (79)
..|..|.|.-.+|..|.|+..+.-.
T Consensus 66 ~~G~~V~V~W~DG~~y~a~f~g~~~ 90 (123)
T 2xdp_A 66 AEGEVVQVKWPDGKLYGAKYFGSNI 90 (123)
T ss_dssp CTTCEEEEECTTSCEEEEEEEEEEE
T ss_pred CCCCEEEEEcCCCCEEeEEEeeeee
Confidence 5788999999999999999888643
No 95
>3num_A Serine protease HTRA1; DEGP, hydrolase; 2.75A {Homo sapiens} PDB: 3nzi_A 2ytw_A 2joa_A
Probab=26.17 E-value=1.1e+02 Score=21.51 Aligned_cols=31 Identities=19% Similarity=0.492 Sum_probs=26.6
Q ss_pred CeEEEEecCCcEEEEEEeEeCCccceEEeee
Q psy14196 16 HIITCETTNGDLFRGKLVEAEDNMNCAMADV 46 (79)
Q Consensus 16 ~~V~VeLKnG~~y~G~L~~~D~~MNv~L~n~ 46 (79)
..+.|.+.+|..|.+++..+|...++.|=.+
T Consensus 70 ~~i~V~~~~g~~~~a~~~~~d~~~DlAlL~l 100 (332)
T 3num_A 70 HRVKVELKNGATYEAKIKDVDEKADIALIKI 100 (332)
T ss_dssp SEEEEEETTSCEEEEEEEEEETTTTEEEEEE
T ss_pred CEEEEEECCCCEEEEEEEEecCCCCeEEEEE
Confidence 5689999999999999999999888776443
No 96
>1y8t_A Hypothetical protein RV0983; serine protease, structural genomics, PSI, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: b.36.1.4 b.47.1.1 PDB: 2z9i_A
Probab=25.83 E-value=89 Score=21.72 Aligned_cols=32 Identities=19% Similarity=0.121 Sum_probs=26.8
Q ss_pred CCeEEEEecCCcEEEEEEeEeCCccceEEeee
Q psy14196 15 GHIITCETTNGDLFRGKLVEAEDNMNCAMADV 46 (79)
Q Consensus 15 g~~V~VeLKnG~~y~G~L~~~D~~MNv~L~n~ 46 (79)
...+.|.+.+|..|.+++..+|...++.|=.+
T Consensus 63 ~~~i~V~~~~g~~~~a~vv~~d~~~DlAllkl 94 (324)
T 1y8t_A 63 PPKTTVTFSDGRTAPFTVVGADPTSDIAVVRV 94 (324)
T ss_dssp -CEEEEEETTCCEECEEEEECCTTTTEEEEEE
T ss_pred ceEEEEEeCCCCEEEEEEEEeCCCCCEEEEEE
Confidence 35799999999999999999999888877543
No 97
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}
Probab=25.44 E-value=1e+02 Score=17.66 Aligned_cols=38 Identities=16% Similarity=0.260 Sum_probs=29.0
Q ss_pred cCCCeEEEEecCCcEEEEEEeEeCCccceEEeeeEEEccCCeE
Q psy14196 13 AEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGTY 55 (79)
Q Consensus 13 ~~g~~V~VeLKnG~~y~G~L~~~D~~MNv~L~n~~~~~~~G~~ 55 (79)
..|..|...=.++.-|-+++.++++. ...+++..||..
T Consensus 8 ~vGd~vmArW~D~~yYpA~I~si~~~-----~~Y~V~F~dG~~ 45 (67)
T 3p8d_A 8 QINEQVLACWSDCRFYPAKVTAVNKD-----GTYTVKFYDGVV 45 (67)
T ss_dssp CTTCEEEEECTTSCEEEEEEEEECTT-----SEEEEEETTSCE
T ss_pred ccCCEEEEEcCCCCEeeEEEEEECCC-----CeEEEEEeCCce
Confidence 46889999999999999999999987 224444445644
No 98
>3he1_A Major exported HCP3 protein; structural genomics, APC22128, HCPC, secretion, virule 2, protein structure initiative; 2.10A {Pseudomonas aeruginosa}
Probab=24.74 E-value=28 Score=23.74 Aligned_cols=44 Identities=16% Similarity=0.150 Sum_probs=32.1
Q ss_pred CchHHHHhhcCCCeE-EEEecCCcEE-EEEEeEeCCccceEEeeeEEEc
Q psy14196 4 GIPIKLLHEAEGHII-TCETTNGDLF-RGKLVEAEDNMNCAMADVTVTF 50 (79)
Q Consensus 4 ~~Pl~lL~~~~g~~V-~VeLKnG~~y-~G~L~~~D~~MNv~L~n~~~~~ 50 (79)
..|+-+-.-+.|+.+ .++|+.-+.- .|. -..|+.+.|+||.+++
T Consensus 99 ASP~L~~A~~~Ge~l~~v~l~~yR~~~~G~---~~~Y~~i~L~~v~Iss 144 (195)
T 3he1_A 99 ASPLLLAALTSGERLTKVEIQWYRTSAAGT---QEHYYTTVLEDAIIVD 144 (195)
T ss_dssp SHHHHHHHHHHTCEEEEEEEEEEEECTTSS---EEEEEEEEEEEEEEEE
T ss_pred chHHHHHHHhCCCccceEEEEEEEeCCCCc---eEEEEEEEEeeeEEEE
Confidence 456666666789988 8888754432 242 4579999999999985
No 99
>1wi5_A RRP5 protein homolog; S1 domain, OB-fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=24.58 E-value=58 Score=19.67 Aligned_cols=19 Identities=26% Similarity=0.349 Sum_probs=16.5
Q ss_pred EecCCcEEEEEEeEeCCcc
Q psy14196 21 ETTNGDLFRGKLVEAEDNM 39 (79)
Q Consensus 21 eLKnG~~y~G~L~~~D~~M 39 (79)
+++-|..|.|++.++.+|-
T Consensus 18 ~l~~G~i~~G~V~~v~~fG 36 (119)
T 1wi5_A 18 ALKPGMLLTGTVSSLEDHG 36 (119)
T ss_dssp TCCTTCEEEEEEEEECSSE
T ss_pred cCCCCCEEEEEEEEEeCce
Confidence 4688999999999998875
No 100
>3eaa_A EVPC; T6SS, unknown function; 2.79A {Edwardsiella tarda} SCOP: b.157.1.0
Probab=24.12 E-value=21 Score=23.27 Aligned_cols=43 Identities=14% Similarity=-0.011 Sum_probs=29.7
Q ss_pred CchHHHHhhcCCCeE-EEEecCCcEEEEEEeEeCCccceEEeeeEEEc
Q psy14196 4 GIPIKLLHEAEGHII-TCETTNGDLFRGKLVEAEDNMNCAMADVTVTF 50 (79)
Q Consensus 4 ~~Pl~lL~~~~g~~V-~VeLKnG~~y~G~L~~~D~~MNv~L~n~~~~~ 50 (79)
..|+=+-..+.|+.+ .++++.-+. .| .-..|+.+.|+||.+++
T Consensus 66 aSP~L~~a~~~G~~l~~v~i~~~r~-~G---~~~~y~~i~L~~v~Is~ 109 (163)
T 3eaa_A 66 ASVKLASAAVQGQNFPTLELEICTQ-AG---DKFAFCIYKFTHVAVSS 109 (163)
T ss_dssp SHHHHHHHHHHTCCEEEEEEEEECS-ST---TCCEEEEEEEEEEEEEE
T ss_pred chHHHHHHHhCCCccCeEEEEEEEC-CC---CeeEEEEEEEEeEEEEE
Confidence 456655555778866 577665444 34 25679999999999985
No 101
>1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 PDB: 4a4e_A* 4a4g_A*
Probab=23.48 E-value=94 Score=16.58 Aligned_cols=24 Identities=8% Similarity=0.181 Sum_probs=20.2
Q ss_pred CCCeEEEEec-CCcEEEEEEeEeCC
Q psy14196 14 EGHIITCETT-NGDLFRGKLVEAED 37 (79)
Q Consensus 14 ~g~~V~VeLK-nG~~y~G~L~~~D~ 37 (79)
.|..+...-. ||.-|++++.+++.
T Consensus 6 ~G~~c~A~~s~Dg~wYrA~I~~i~~ 30 (59)
T 1mhn_A 6 VGDKCSAIWSEDGCIYPATIASIDF 30 (59)
T ss_dssp TTCEEEEECTTTSCEEEEEEEEEET
T ss_pred cCCEEEEEECCCCCEEEEEEEEEcC
Confidence 5777888875 89999999999975
No 102
>2w5e_A Putative serine protease; coiled coil, transmembrane, thiol protease, RNA replication, ribosomal frameshifting, catalytic triad, membrane; 2.00A {Human astrovirus 1}
Probab=23.32 E-value=1.5e+02 Score=18.99 Aligned_cols=27 Identities=11% Similarity=0.170 Sum_probs=21.5
Q ss_pred CeEEEEecCCcEEEEEEeEeCCccceEEe
Q psy14196 16 HIITCETTNGDLFRGKLVEAEDNMNCAMA 44 (79)
Q Consensus 16 ~~V~VeLKnG~~y~G~L~~~D~~MNv~L~ 44 (79)
..+.|.+ +|..|..++. .|....+.|=
T Consensus 43 ~~i~V~~-dg~~~~a~vv-~d~~~DlAlL 69 (163)
T 2w5e_A 43 TFVNVCY-EGLMYEAKVR-YMPEKDIAFI 69 (163)
T ss_dssp SEEEEEE-TTEEEEEEEE-ECCSSSEEEE
T ss_pred ceEEEEE-CCEEEEEEEE-EECCCCEEEE
Confidence 4678888 9999999999 8877666554
No 103
>2k52_A Uncharacterized protein MJ1198; metal-binding, zinc, zinc-finger, structural genomics, PSI-2, protein structure initiative; NMR {Methanocaldococcus jannaschii}
Probab=23.07 E-value=49 Score=18.55 Aligned_cols=19 Identities=16% Similarity=0.424 Sum_probs=15.7
Q ss_pred EecCCcEEEEEEeEeCCcc
Q psy14196 21 ETTNGDLFRGKLVEAEDNM 39 (79)
Q Consensus 21 eLKnG~~y~G~L~~~D~~M 39 (79)
+++-|..|.|++.++.++-
T Consensus 2 ~~~~G~iv~G~V~~v~~~G 20 (80)
T 2k52_A 2 DVEPGKFYKGVVTRIEKYG 20 (80)
T ss_dssp CCCTTCEEEEEEEEEETTE
T ss_pred CCCCCCEEEEEEEEEeCCE
Confidence 3577999999999998864
No 104
>3qo6_A Protease DO-like 1, chloroplastic; protease, HTRA, PH-sensor, hydrolase, photosynthesis; 2.50A {Arabidopsis thaliana}
Probab=22.92 E-value=1.1e+02 Score=21.67 Aligned_cols=31 Identities=13% Similarity=0.243 Sum_probs=26.6
Q ss_pred CeEEEEecCCcEEEEEEeEeCCccceEEeee
Q psy14196 16 HIITCETTNGDLFRGKLVEAEDNMNCAMADV 46 (79)
Q Consensus 16 ~~V~VeLKnG~~y~G~L~~~D~~MNv~L~n~ 46 (79)
..+.|.+.+|..|.+++..+|...++.|=.+
T Consensus 77 ~~i~V~~~~g~~~~a~~v~~d~~~DlAlLkl 107 (348)
T 3qo6_A 77 SDLRVTLADQTTFDAKVVGFDQDKDVAVLRI 107 (348)
T ss_dssp SEEEEECTTSCEEEEEEEEEEGGGTEEEEEC
T ss_pred cEEEEEECCCCEEEEEEEEEcCcCCEEEEEE
Confidence 5788999999999999999999888776544
No 105
>2k0q_A Putative uncharacterized protein COPK; copper, heavy metal resistance, open barrel, plasmid- encoded, metal binding protein; NMR {Cupriavidus metallidurans} PDB: 2km0_A 2lel_A 3dso_A 3dsp_A 3n7d_A 3n7e_A
Probab=22.03 E-value=50 Score=19.66 Aligned_cols=38 Identities=24% Similarity=0.267 Sum_probs=22.7
Q ss_pred EEEEecCCcEEE----EEEeEeCCccceE-Ee-eeEEEccCCeE
Q psy14196 18 ITCETTNGDLFR----GKLVEAEDNMNCA-MA-DVTVTFRDGTY 55 (79)
Q Consensus 18 V~VeLKnG~~y~----G~L~~~D~~MNv~-L~-n~~~~~~~G~~ 55 (79)
=+|+||||++.. |++.-=|.|-+.+ ++ .......||+.
T Consensus 8 k~v~LkDGstvyiFKDGKMamEdk~Gra~~m~~G~~meT~DG~~ 51 (74)
T 2k0q_A 8 KTYDLQDGSKVHVFKDGKMGMENKFGKSMNMPEGKVMETRDGTK 51 (74)
T ss_dssp EEEEBTTSCEEEEETTSCEEEECTTSCEECCCBTCEEEBTTSCE
T ss_pred eeEecCCCcEEEEEcCCceehhhhcCceEEcCCCcEEEecCCCE
Confidence 479999998875 5666666554322 21 22333468866
No 106
>2bn8_A CEDA, cell division activator CEDA; cell division activator protein, cell cycle protein; NMR {Escherichia coli} PDB: 2d35_A
Probab=21.86 E-value=7.5 Score=23.66 Aligned_cols=23 Identities=22% Similarity=0.286 Sum_probs=19.1
Q ss_pred ecCccccccccccc-cceeEEeec
Q psy14196 56 YLPALVPIAGMWNG-TSGLRWATQ 78 (79)
Q Consensus 56 ~lp~~l~~~p~~~~-~~~~~~~~~ 78 (79)
.+.+.|+.+|.|.- .++-|||.|
T Consensus 55 l~ge~frrspafsvpesaqrwa~q 78 (87)
T 2bn8_A 55 LMGESFLRSPAFTVPESAQRWANQ 78 (87)
T ss_dssp CSSSCCCBCCCBSSHHHHHHHHHH
T ss_pred EechhhccCCccCCcHHHHHHHHH
Confidence 77899999997765 788899876
No 107
>2hqx_A P100 CO-activator tudor domain; human P100 tudor domain, proteolytic fragment, PSI, structural genomics; 1.42A {Homo sapiens} SCOP: b.34.9.1 PDB: 2hqe_A 3omc_A* 3omg_A* 2o4x_A 2e6n_A 2o4x_B
Probab=21.27 E-value=1.9e+02 Score=19.22 Aligned_cols=25 Identities=16% Similarity=0.464 Sum_probs=21.4
Q ss_pred cCCCeEEEEecCCcEEEEEEeEeCC
Q psy14196 13 AEGHIITCETTNGDLFRGKLVEAED 37 (79)
Q Consensus 13 ~~g~~V~VeLKnG~~y~G~L~~~D~ 37 (79)
..|..+.+.-.+|.-||+++.++++
T Consensus 67 ~~G~~c~a~~~d~~wyRa~V~~~~~ 91 (246)
T 2hqx_A 67 RRGEFCIAKFVDGEWYRARVEKVES 91 (246)
T ss_dssp CTTCEEEEECTTSCEEEEEEEEEEE
T ss_pred CCCCEEEEEcCCCCEEEEEEEEEcC
Confidence 3688888887799999999999974
No 108
>1g5v_A SurviVal motor neuron protein 1; mRNA processing, translation; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=20.70 E-value=1.4e+02 Score=17.68 Aligned_cols=25 Identities=8% Similarity=0.169 Sum_probs=21.8
Q ss_pred cCCCeEEEEec-CCcEEEEEEeEeCC
Q psy14196 13 AEGHIITCETT-NGDLFRGKLVEAED 37 (79)
Q Consensus 13 ~~g~~V~VeLK-nG~~y~G~L~~~D~ 37 (79)
-.|..+...-. ||.-|++++.+++.
T Consensus 12 kvGd~C~A~ys~Dg~wYrA~I~~i~~ 37 (88)
T 1g5v_A 12 KVGDKCSAIWSEDGCIYPATIASIDF 37 (88)
T ss_dssp CSSCEEEEECTTTCCEEEEEEEEEET
T ss_pred CCCCEEEEEECCCCCEEEEEEEEecC
Confidence 35888999885 99999999999986
No 109
>3ne5_B Cation efflux system protein CUSB; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3ooc_A 3opo_A 3ow7_A 4dnt_B 4dop_B 3h9i_A 3h94_A 3h9t_B 3t53_B 3t51_B 3t56_B
Probab=20.49 E-value=69 Score=23.31 Aligned_cols=28 Identities=4% Similarity=-0.040 Sum_probs=24.8
Q ss_pred cCCCeEEEEecC--CcEEEEEEeEeCCccc
Q psy14196 13 AEGHIITCETTN--GDLFRGKLVEAEDNMN 40 (79)
Q Consensus 13 ~~g~~V~VeLKn--G~~y~G~L~~~D~~MN 40 (79)
..|..|.|.+.. |..|.|++..++...+
T Consensus 259 ~~G~~v~v~~~~~p~~~~~G~V~~I~p~~d 288 (413)
T 3ne5_B 259 KDASQFTLTVPARPDKTLTIRKWTLLPGVD 288 (413)
T ss_dssp TTCCCEEEEETTEEEEEEEECCCEECSCCB
T ss_pred cCCCeEEEEEecCCCcEEEEEEEEEeCccC
Confidence 479999999996 8999999999998765
No 110
>3qii_A PHD finger protein 20; tudor domain, structural genomics, structural GE consortium, SGC, transcription regulator; 2.30A {Homo sapiens}
Probab=20.33 E-value=1.5e+02 Score=17.79 Aligned_cols=38 Identities=16% Similarity=0.260 Sum_probs=29.2
Q ss_pred cCCCeEEEEecCCcEEEEEEeEeCCccceEEeeeEEEccCCeE
Q psy14196 13 AEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGTY 55 (79)
Q Consensus 13 ~~g~~V~VeLKnG~~y~G~L~~~D~~MNv~L~n~~~~~~~G~~ 55 (79)
..|..|.-+=.++..|-+++.++++. ...++...||..
T Consensus 23 ~vGd~VlArW~D~~yYPAkI~sV~~~-----~~YtV~F~DG~~ 60 (85)
T 3qii_A 23 QINEQVLACWSDCRFYPAKVTAVNKD-----GTYTVKFYDGVV 60 (85)
T ss_dssp CTTCEEEEECTTSCEEEEEEEEECTT-----SEEEEEETTSCE
T ss_pred ccCCEEEEEeCCCCEeeEEEEEECCC-----CeEEEEEeCCCe
Confidence 57899999999999999999999997 224444445644
No 111
>1z85_A Hypothetical protein TM1380; alpha/beta knot fold, structural genomics, joint center for structural genomics, JCSG; 2.12A {Thermotoga maritima}
Probab=20.23 E-value=1.3e+02 Score=20.72 Aligned_cols=31 Identities=19% Similarity=0.313 Sum_probs=27.2
Q ss_pred HHHhhcCCCeEEEEecCCcEEEEEEeEeCCc
Q psy14196 8 KLLHEAEGHIITCETTNGDLFRGKLVEAEDN 38 (79)
Q Consensus 8 ~lL~~~~g~~V~VeLKnG~~y~G~L~~~D~~ 38 (79)
++|+--.|..|.|---+|..|.+++..++..
T Consensus 37 ~VLRl~~Gd~v~l~dg~G~~~~a~I~~~~~~ 67 (234)
T 1z85_A 37 RVVRLKEGDVIEATDGNGFSYTCILKSLKKK 67 (234)
T ss_dssp HHTTCCTTCEEEEECSBSEEEEEEEEEECSS
T ss_pred HhhcCCCCCEEEEEeCCCCEEEEEEEEecCC
Confidence 6788889999998878899999999999864
Done!