Your job contains 1 sequence.
>psy14196
MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGTYYLPAL
VPIAGMWNGTSGLRWATQE
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy14196
(79 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
UNIPROTKB|Q5ZL58 - symbol:SNRPD3 "Uncharacterized protein... 234 1.2e-19 1
UNIPROTKB|F1MZ00 - symbol:SNRPD3 "Uncharacterized protein... 234 1.2e-19 1
UNIPROTKB|B4DJP7 - symbol:SNRPD3 "Small nuclear ribonucle... 234 1.2e-19 1
UNIPROTKB|P62318 - symbol:SNRPD3 "Small nuclear ribonucle... 234 1.2e-19 1
UNIPROTKB|F2Z4Y0 - symbol:SNRPD3 "Uncharacterized protein... 234 1.2e-19 1
UNIPROTKB|P62323 - symbol:snrpd3 "Small nuclear ribonucle... 234 1.2e-19 1
MGI|MGI:1914582 - symbol:Snrpd3 "small nuclear ribonucleo... 234 1.2e-19 1
ZFIN|ZDB-GENE-030131-5219 - symbol:snrpd3l "small nuclear... 234 1.2e-19 1
ZFIN|ZDB-GENE-040625-55 - symbol:snrpd3 "small nuclear ri... 233 1.5e-19 1
FB|FBgn0023167 - symbol:SmD3 "Small ribonucleoprotein par... 232 1.9e-19 1
DICTYBASE|DDB_G0273003 - symbol:snrpD3 "putative small nu... 208 6.7e-17 1
WB|WBGene00004914 - symbol:snr-1 species:6239 "Caenorhabd... 207 8.6e-17 1
UNIPROTKB|G4NGM8 - symbol:MGG_04083 "Small nuclear ribonu... 188 8.8e-15 1
ASPGD|ASPL0000047555 - symbol:AN2007 species:162425 "Emer... 187 1.1e-14 1
TAIR|locus:2030442 - symbol:AT1G20580 "AT1G20580" species... 182 3.8e-14 1
POMBASE|SPBC19C2.14 - symbol:smd3 "Sm snRNP core protein ... 180 6.2e-14 1
TAIR|locus:2014589 - symbol:SmD3 "AT1G76300" species:3702... 170 7.1e-13 1
CGD|CAL0005718 - symbol:SMD3 species:5476 "Candida albica... 162 5.0e-12 1
SGD|S000004137 - symbol:SMD3 "Core Sm protein Sm D3" spec... 148 1.5e-10 1
TAIR|locus:2180295 - symbol:emb1644 "AT5G27720" species:3... 92 0.00013 1
FB|FBgn0032240 - symbol:CG17768 species:7227 "Drosophila ... 91 0.00017 1
UNIPROTKB|Q3ZBK6 - symbol:LSM4 "U6 snRNA-associated Sm-li... 91 0.00017 1
UNIPROTKB|Q9Y4Z0 - symbol:LSM4 "U6 snRNA-associated Sm-li... 91 0.00017 1
MGI|MGI:1354692 - symbol:Lsm4 "LSM4 homolog, U6 small nuc... 91 0.00017 1
ZFIN|ZDB-GENE-040426-1652 - symbol:lsm4 "LSM4 homolog, U6... 91 0.00017 1
WB|WBGene00003078 - symbol:lsm-4 species:6239 "Caenorhabd... 85 0.00072 1
>UNIPROTKB|Q5ZL58 [details] [associations]
symbol:SNRPD3 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0005683 "U7 snRNP" evidence=IEA] [GO:0005689
"U12-type spliceosomal complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0019899 "enzyme binding"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0071208 "histone pre-mRNA DCP binding"
evidence=IEA] INTERPRO:IPR001163 GO:GO:0005737 GO:GO:0071013
InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0005689 Pfam:PF01423
GO:GO:0005683 GO:GO:0071208 InterPro:IPR006649 SMART:SM00651
eggNOG:COG1958 InterPro:IPR027141 PANTHER:PTHR23338
GeneTree:ENSGT00610000086153 HOGENOM:HOG000182712 KO:K11088
OMA:RNAPMFR CTD:6634 HOVERGEN:HBG105305 OrthoDB:EOG4CRM1J
EMBL:AADN02043235 EMBL:AJ719876 IPI:IPI00604392
RefSeq:NP_001007839.1 UniGene:Gga.8376 SMR:Q5ZL58 STRING:Q5ZL58
Ensembl:ENSGALT00000010647 GeneID:416947 KEGG:gga:416947
InParanoid:Q5ZL58 NextBio:20820335 Uniprot:Q5ZL58
Length = 126
Score = 234 (87.4 bits), Expect = 1.2e-19, P = 1.2e-19
Identities = 39/53 (73%), Positives = 50/53 (94%)
Query: 1 MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG 53
MSIG+PIK+LHEAEGHI+TCET G+++RGKL+EAEDNMNC M+++TVT+RDG
Sbjct: 1 MSIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDG 53
>UNIPROTKB|F1MZ00 [details] [associations]
symbol:SNRPD3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071208 "histone pre-mRNA DCP binding" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0019899 "enzyme binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005689 "U12-type spliceosomal complex"
evidence=IEA] [GO:0005683 "U7 snRNP" evidence=IEA]
INTERPRO:IPR001163 GO:GO:0005737 GO:GO:0071013 InterPro:IPR010920
SUPFAM:SSF50182 GO:GO:0005689 Pfam:PF01423 GO:GO:0005683
GO:GO:0071208 InterPro:IPR006649 SMART:SM00651 InterPro:IPR027141
PANTHER:PTHR23338 GeneTree:ENSGT00610000086153 OMA:RNAPMFR
EMBL:DAAA02045688 IPI:IPI00699558 UniGene:Bt.28460
ProteinModelPortal:F1MZ00 SMR:F1MZ00 PRIDE:F1MZ00
Ensembl:ENSBTAT00000028330 Uniprot:F1MZ00
Length = 126
Score = 234 (87.4 bits), Expect = 1.2e-19, P = 1.2e-19
Identities = 39/53 (73%), Positives = 50/53 (94%)
Query: 1 MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG 53
MSIG+PIK+LHEAEGHI+TCET G+++RGKL+EAEDNMNC M+++TVT+RDG
Sbjct: 1 MSIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDG 53
>UNIPROTKB|B4DJP7 [details] [associations]
symbol:SNRPD3 "Small nuclear ribonucleoprotein Sm D3"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
INTERPRO:IPR001163 GO:GO:0003676 GO:GO:0030529 InterPro:IPR010920
SUPFAM:SSF50182 EMBL:AP000356 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 InterPro:IPR027141 PANTHER:PTHR23338
HOGENOM:HOG000182712 UniGene:Hs.356549 HGNC:HGNC:11160
HOVERGEN:HBG105305 EMBL:AK296173 IPI:IPI00878876 SMR:B4DJP7
STRING:B4DJP7 Ensembl:ENST00000402849 UCSC:uc011aju.2
Uniprot:B4DJP7
Length = 120
Score = 234 (87.4 bits), Expect = 1.2e-19, P = 1.2e-19
Identities = 39/53 (73%), Positives = 50/53 (94%)
Query: 1 MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG 53
MSIG+PIK+LHEAEGHI+TCET G+++RGKL+EAEDNMNC M+++TVT+RDG
Sbjct: 1 MSIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDG 53
>UNIPROTKB|P62318 [details] [associations]
symbol:SNRPD3 "Small nuclear ribonucleoprotein Sm D3"
species:9606 "Homo sapiens" [GO:0005515 "protein binding"
evidence=IPI] [GO:0019899 "enzyme binding" evidence=IPI]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
[GO:0071208 "histone pre-mRNA DCP binding" evidence=ISS]
[GO:0005689 "U12-type spliceosomal complex" evidence=IDA]
[GO:0005683 "U7 snRNP" evidence=IDA] [GO:0000398 "mRNA splicing,
via spliceosome" evidence=IC;TAS] [GO:0030532 "small nuclear
ribonucleoprotein complex" evidence=TAS] [GO:0005681 "spliceosomal
complex" evidence=TAS] [GO:0000387 "spliceosomal snRNP assembly"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0005829
"cytosol" evidence=TAS] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=TAS] [GO:0006369 "termination of
RNA polymerase II transcription" evidence=TAS] [GO:0006397 "mRNA
processing" evidence=TAS] [GO:0008334 "histone mRNA metabolic
process" evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0034660 "ncRNA metabolic
process" evidence=TAS] Reactome:REACT_71 Reactome:REACT_21257
INTERPRO:IPR001163 GO:GO:0005829 GO:GO:0005654 PDB:3VRI PDBsum:3VRI
EMBL:CH471095 Reactome:REACT_1675 GO:GO:0000387 GO:GO:0034660
GO:GO:0071013 InterPro:IPR010920 SUPFAM:SSF50182
Reactome:REACT_1788 GO:GO:0006369 Reactome:REACT_78 GO:GO:0005689
Pfam:PF01423 GO:GO:0008334 GO:GO:0005683 GO:GO:0071208
InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958 InterPro:IPR027141
PANTHER:PTHR23338 PDB:1D3B PDB:2Y9A PDB:2Y9B PDB:2Y9C PDB:2Y9D
PDB:3CW1 PDB:3PGW PDBsum:1D3B PDBsum:2Y9A PDBsum:2Y9B PDBsum:2Y9C
PDBsum:2Y9D PDBsum:3CW1 PDBsum:3PGW HOGENOM:HOG000182712 KO:K11088
OMA:RNAPMFR EMBL:U15009 EMBL:CR456583 EMBL:AB451249 EMBL:AB451373
EMBL:BC000457 EMBL:BC003150 IPI:IPI00017964 RefSeq:NP_004166.1
UniGene:Hs.356549 ProteinModelPortal:P62318 SMR:P62318
DIP:DIP-31216N IntAct:P62318 MINT:MINT-5002679 STRING:P62318
PhosphoSite:P62318 DMDM:51338667 PaxDb:P62318 PeptideAtlas:P62318
PRIDE:P62318 DNASU:6634 Ensembl:ENST00000215829
Ensembl:ENST00000404603 GeneID:6634 KEGG:hsa:6634 UCSC:uc003aam.1
CTD:6634 GeneCards:GC22P024951 HGNC:HGNC:11160 HPA:HPA001170
MIM:601062 neXtProt:NX_P62318 PharmGKB:PA36001 HOVERGEN:HBG105305
InParanoid:P62318 OrthoDB:EOG4CRM1J PhylomeDB:P62318
EvolutionaryTrace:P62318 GenomeRNAi:6634 NextBio:25845
ArrayExpress:P62318 Bgee:P62318 CleanEx:HS_SNRPD3
Genevestigator:P62318 Uniprot:P62318
Length = 126
Score = 234 (87.4 bits), Expect = 1.2e-19, P = 1.2e-19
Identities = 39/53 (73%), Positives = 50/53 (94%)
Query: 1 MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG 53
MSIG+PIK+LHEAEGHI+TCET G+++RGKL+EAEDNMNC M+++TVT+RDG
Sbjct: 1 MSIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDG 53
>UNIPROTKB|F2Z4Y0 [details] [associations]
symbol:SNRPD3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071208 "histone pre-mRNA DCP binding" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0019899 "enzyme binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005689 "U12-type spliceosomal complex"
evidence=IEA] [GO:0005683 "U7 snRNP" evidence=IEA]
INTERPRO:IPR001163 GO:GO:0005737 GO:GO:0071013 InterPro:IPR010920
SUPFAM:SSF50182 GO:GO:0005689 Pfam:PF01423 GO:GO:0005683
GO:GO:0071208 InterPro:IPR006649 SMART:SM00651 InterPro:IPR027141
PANTHER:PTHR23338 GeneTree:ENSGT00610000086153 KO:K11088
OMA:RNAPMFR CTD:6634 EMBL:FP476093 RefSeq:NP_001230355.1
UniGene:Ssc.6651 ProteinModelPortal:F2Z4Y0 SMR:F2Z4Y0 PRIDE:F2Z4Y0
Ensembl:ENSSSCT00000011019 GeneID:100153480 KEGG:ssc:100153480
Uniprot:F2Z4Y0
Length = 126
Score = 234 (87.4 bits), Expect = 1.2e-19, P = 1.2e-19
Identities = 39/53 (73%), Positives = 50/53 (94%)
Query: 1 MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG 53
MSIG+PIK+LHEAEGHI+TCET G+++RGKL+EAEDNMNC M+++TVT+RDG
Sbjct: 1 MSIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDG 53
>UNIPROTKB|P62323 [details] [associations]
symbol:snrpd3 "Small nuclear ribonucleoprotein Sm D3"
species:8355 "Xenopus laevis" [GO:0071208 "histone pre-mRNA DCP
binding" evidence=ISS] INTERPRO:IPR001163 GO:GO:0005634
GO:GO:0008380 GO:GO:0006397 GO:GO:0030529 InterPro:IPR010920
SUPFAM:SSF50182 Pfam:PF01423 GO:GO:0071208 InterPro:IPR006649
SMART:SM00651 InterPro:IPR027141 PANTHER:PTHR23338 KO:K11088
CTD:6634 HOVERGEN:HBG105305 EMBL:BC070616 RefSeq:NP_001084936.1
UniGene:Xl.75328 ProteinModelPortal:P62323 SMR:P62323 PRIDE:P62323
GeneID:431993 KEGG:xla:431993 Xenbase:XB-GENE-1014508
Uniprot:P62323
Length = 126
Score = 234 (87.4 bits), Expect = 1.2e-19, P = 1.2e-19
Identities = 39/53 (73%), Positives = 50/53 (94%)
Query: 1 MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG 53
MSIG+PIK+LHEAEGHI+TCET G+++RGKL+EAEDNMNC M+++TVT+RDG
Sbjct: 1 MSIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDG 53
>MGI|MGI:1914582 [details] [associations]
symbol:Snrpd3 "small nuclear ribonucleoprotein D3"
species:10090 "Mus musculus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0005683 "U7 snRNP" evidence=ISO] [GO:0005689
"U12-type spliceosomal complex" evidence=ISO] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0019899
"enzyme binding" evidence=ISO] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] [GO:0071208 "histone pre-mRNA DCP binding"
evidence=IDA] MGI:MGI:1914582 INTERPRO:IPR001163 GO:GO:0005737
GO:GO:0008380 GO:GO:0006397 GO:GO:0071013 InterPro:IPR010920
SUPFAM:SSF50182 GO:GO:0005689 Pfam:PF01423 GO:GO:0005683
GO:GO:0071208 InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958
InterPro:IPR027141 PANTHER:PTHR23338 GeneTree:ENSGT00610000086153
HOGENOM:HOG000182712 KO:K11088 OMA:RNAPMFR CTD:6634
HOVERGEN:HBG105305 OrthoDB:EOG4CRM1J EMBL:AK005341 EMBL:AK006692
EMBL:AK019453 EMBL:AK160321 IPI:IPI00119224 RefSeq:NP_080371.1
UniGene:Mm.392843 UniGene:Mm.45151 ProteinModelPortal:P62320
SMR:P62320 IntAct:P62320 MINT:MINT-124943 STRING:P62320
PhosphoSite:P62320 PaxDb:P62320 PRIDE:P62320
Ensembl:ENSMUST00000020397 GeneID:67332 KEGG:mmu:67332
UCSC:uc007fqm.1 InParanoid:P62320 ChiTaRS:SNRPD3 NextBio:324264
Bgee:P62320 CleanEx:MM_SNRPD3 Genevestigator:P62320
GermOnline:ENSMUSG00000020180 Uniprot:P62320
Length = 126
Score = 234 (87.4 bits), Expect = 1.2e-19, P = 1.2e-19
Identities = 39/53 (73%), Positives = 50/53 (94%)
Query: 1 MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG 53
MSIG+PIK+LHEAEGHI+TCET G+++RGKL+EAEDNMNC M+++TVT+RDG
Sbjct: 1 MSIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDG 53
>ZFIN|ZDB-GENE-030131-5219 [details] [associations]
symbol:snrpd3l "small nuclear ribonucleoprotein D3
polypeptide, like" species:7955 "Danio rerio" [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] INTERPRO:IPR001163 ZFIN:ZDB-GENE-030131-5219
InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 InterPro:IPR027141 PANTHER:PTHR23338
GeneTree:ENSGT00610000086153 EMBL:CU570693 IPI:IPI00998432
Ensembl:ENSDART00000130407 ArrayExpress:F1QL20 Bgee:F1QL20
Uniprot:F1QL20
Length = 171
Score = 234 (87.4 bits), Expect = 1.2e-19, P = 1.2e-19
Identities = 39/53 (73%), Positives = 50/53 (94%)
Query: 1 MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG 53
MSIG+PIK+LHEAEGHI+TCET G+++RGKL+EAEDNMNC M+++TVT+RDG
Sbjct: 44 MSIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDG 96
>ZFIN|ZDB-GENE-040625-55 [details] [associations]
symbol:snrpd3 "small nuclear ribonucleoprotein D3
polypeptide" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] INTERPRO:IPR001163 ZFIN:ZDB-GENE-040625-55
GO:GO:0003676 GO:GO:0030529 InterPro:IPR010920 SUPFAM:SSF50182
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 InterPro:IPR027141
PANTHER:PTHR23338 CTD:6634 HOVERGEN:HBG105305 EMBL:BC071554
IPI:IPI00630099 RefSeq:NP_001002081.1 UniGene:Dr.83576
ProteinModelPortal:Q6IQ56 SMR:Q6IQ56 STRING:Q6IQ56 GeneID:415171
KEGG:dre:415171 InParanoid:Q6IQ56 NextBio:20818843
ArrayExpress:Q6IQ56 Uniprot:Q6IQ56
Length = 127
Score = 233 (87.1 bits), Expect = 1.5e-19, P = 1.5e-19
Identities = 39/53 (73%), Positives = 50/53 (94%)
Query: 1 MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG 53
MSIG+PIK+LHEAEGHI+TCET G+++RGKL+EAEDN+NC MA++TVT+RDG
Sbjct: 1 MSIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNVNCQMANITVTYRDG 53
>FB|FBgn0023167 [details] [associations]
symbol:SmD3 "Small ribonucleoprotein particle protein SmD3"
species:7227 "Drosophila melanogaster" [GO:0007417 "central nervous
system development" evidence=IMP] [GO:0048542 "lymph gland
development" evidence=IMP] [GO:0007422 "peripheral nervous system
development" evidence=NAS;IMP] [GO:0030182 "neuron differentiation"
evidence=IMP] [GO:0007517 "muscle organ development" evidence=IMP]
[GO:0030532 "small nuclear ribonucleoprotein complex"
evidence=ISS;NAS;TAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;ISS] [GO:0005681 "spliceosomal complex" evidence=ISS]
[GO:0005634 "nucleus" evidence=NAS] [GO:0007052 "mitotic spindle
organization" evidence=IMP] [GO:0007067 "mitosis" evidence=IMP]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
[GO:0071011 "precatalytic spliceosome" evidence=IDA] [GO:0045495
"pole plasm" evidence=IDA] [GO:0045451 "pole plasm oskar mRNA
localization" evidence=IMP] INTERPRO:IPR001163 EMBL:AE013599
GO:GO:0007067 GO:GO:0007052 GO:GO:0030182 GO:GO:0007422
GO:GO:0007417 GO:GO:0007517 GO:GO:0048542 GO:GO:0071011
GO:GO:0000398 GO:GO:0071013 InterPro:IPR010920 SUPFAM:SSF50182
GO:GO:0030532 GO:GO:0045451 GO:GO:0045495 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958 InterPro:IPR027141
PANTHER:PTHR23338 GeneTree:ENSGT00610000086153 KO:K11088
EMBL:AF038598 EMBL:AY113465 RefSeq:NP_725106.1 UniGene:Dm.19912
ProteinModelPortal:O44437 SMR:O44437 DIP:DIP-19470N IntAct:O44437
MINT:MINT-306370 STRING:O44437 PaxDb:O44437 PRIDE:O44437
EnsemblMetazoa:FBtr0087986 GeneID:36306 KEGG:dme:Dmel_CG8427
CTD:36306 FlyBase:FBgn0023167 InParanoid:O44437 OMA:RNAPMFR
OrthoDB:EOG44TMRK PhylomeDB:O44437 GenomeRNAi:36306 NextBio:797837
Bgee:O44437 GermOnline:CG8427 Uniprot:O44437
Length = 151
Score = 232 (86.7 bits), Expect = 1.9e-19, P = 1.9e-19
Identities = 40/53 (75%), Positives = 48/53 (90%)
Query: 1 MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG 53
MSIG+PIK+LHEAEGHIITCET G+++RGKL+EAEDNMNC M +TVT+RDG
Sbjct: 1 MSIGVPIKVLHEAEGHIITCETITGEVYRGKLIEAEDNMNCQMTQITVTYRDG 53
>DICTYBASE|DDB_G0273003 [details] [associations]
symbol:snrpD3 "putative small nuclear
ribonucleoprotein D3" species:44689 "Dictyostelium discoideum"
[GO:0044351 "macropinocytosis" evidence=RCA] dictyBase:DDB_G0273003
INTERPRO:IPR001163 GenomeReviews:CM000151_GR EMBL:AAFI02000008
InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 eggNOG:COG1958 InterPro:IPR027141 PANTHER:PTHR23338
KO:K11088 RefSeq:XP_001134627.1 ProteinModelPortal:Q86L45
SMR:Q86L45 STRING:Q86L45 EnsemblProtists:DDB0233194 GeneID:8618627
KEGG:ddi:DDB_G0273003 InParanoid:Q86L45 OMA:HEADGHI
ProtClustDB:CLSZ2847462 Uniprot:Q86L45
Length = 146
Score = 208 (78.3 bits), Expect = 6.7e-17, P = 6.7e-17
Identities = 36/53 (67%), Positives = 46/53 (86%)
Query: 1 MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG 53
MSIGIP+K+LHEA+GHI+T E NG+L+RG L+E+EDNMNC M ++TVT RDG
Sbjct: 1 MSIGIPVKILHEADGHIVTVELKNGELYRGTLIESEDNMNCRMKNITVTARDG 53
>WB|WBGene00004914 [details] [associations]
symbol:snr-1 species:6239 "Caenorhabditis elegans"
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0040007
"growth" evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0006898 "receptor-mediated endocytosis"
evidence=IMP] [GO:0032940 "secretion by cell" evidence=IMP]
[GO:0040027 "negative regulation of vulval development"
evidence=IMP] [GO:0006915 "apoptotic process" evidence=IMP]
[GO:0043186 "P granule" evidence=IDA] INTERPRO:IPR001163
GO:GO:0005634 GO:GO:0009792 GO:GO:0006898 GO:GO:0040007
GO:GO:0040010 GO:GO:0006915 GO:GO:0002119 GO:GO:0032940
GO:GO:0008380 GO:GO:0006397 GO:GO:0000003 GO:GO:0040027
InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0043186 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958 InterPro:IPR027141
PANTHER:PTHR23338 EMBL:AL117204 EMBL:U23937 PIR:T31498
RefSeq:NP_503027.1 ProteinModelPortal:Q17348 SMR:Q17348
IntAct:Q17348 STRING:Q17348 PaxDb:Q17348
EnsemblMetazoa:Y116A8C.42.1 EnsemblMetazoa:Y116A8C.42.2
GeneID:178483 KEGG:cel:CELE_Y116A8C.42 UCSC:Y116A8C.42.1 CTD:178483
WormBase:Y116A8C.42 GeneTree:ENSGT00610000086153
HOGENOM:HOG000182712 InParanoid:Q17348 KO:K11088 OMA:ESIPIKV
NextBio:901312 Uniprot:Q17348
Length = 136
Score = 207 (77.9 bits), Expect = 8.6e-17, P = 8.6e-17
Identities = 35/52 (67%), Positives = 45/52 (86%)
Query: 2 SIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG 53
S+G+PIK+LHEAEGH++T ET G+++RGKL EAEDNMNC +A+ VTFRDG
Sbjct: 3 SVGVPIKILHEAEGHMVTLETVTGEVYRGKLSEAEDNMNCQLAETVVTFRDG 54
>UNIPROTKB|G4NGM8 [details] [associations]
symbol:MGG_04083 "Small nuclear ribonucleoprotein Sm D3"
species:242507 "Magnaporthe oryzae 70-15" [GO:0003674
"molecular_function" evidence=ND] INTERPRO:IPR001163 GO:GO:0003676
GO:GO:0030529 EMBL:CM001236 InterPro:IPR010920 SUPFAM:SSF50182
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 InterPro:IPR027141
PANTHER:PTHR23338 KO:K11088 RefSeq:XP_003719755.1
ProteinModelPortal:G4NGM8 SMR:G4NGM8 EnsemblFungi:MGG_04083T0
GeneID:2677512 KEGG:mgr:MGG_04083 Uniprot:G4NGM8
Length = 119
Score = 188 (71.2 bits), Expect = 8.8e-15, P = 8.8e-15
Identities = 35/52 (67%), Positives = 43/52 (82%)
Query: 2 SIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG 53
+IGIPIKLL+EA+GHIIT E T G +RGKL++AEDNMN + D+TVT RDG
Sbjct: 4 TIGIPIKLLNEAQGHIITLEITTGQTYRGKLIDAEDNMNIQLRDITVTARDG 55
>ASPGD|ASPL0000047555 [details] [associations]
symbol:AN2007 species:162425 "Emericella nidulans"
[GO:0006995 "cellular response to nitrogen starvation"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] [GO:0070317 "negative regulation of G0 to G1
transition" evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA]
[GO:0005685 "U1 snRNP" evidence=IEA] [GO:0071004 "U2-type
prespliceosome" evidence=IEA] [GO:0005682 "U5 snRNP" evidence=IEA]
[GO:0000243 "commitment complex" evidence=IEA] [GO:0046540 "U4/U6 x
U5 tri-snRNP complex" evidence=IEA] INTERPRO:IPR001163
EMBL:BN001307 GO:GO:0003676 EMBL:AACD01000032 GO:GO:0030529
InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 eggNOG:COG1958 InterPro:IPR027141 PANTHER:PTHR23338
HOGENOM:HOG000182712 KO:K11088 OMA:RNAPMFR OrthoDB:EOG4285B6
RefSeq:XP_659611.1 ProteinModelPortal:Q5BBS3 SMR:Q5BBS3
STRING:Q5BBS3 EnsemblFungi:CADANIAT00008675 GeneID:2874973
KEGG:ani:AN2007.2 Uniprot:Q5BBS3
Length = 116
Score = 187 (70.9 bits), Expect = 1.1e-14, P = 1.1e-14
Identities = 34/52 (65%), Positives = 45/52 (86%)
Query: 2 SIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG 53
+IGIPIKLL+EA+GH++T E T+G ++RGKL+EAEDNMN + D+TVT RDG
Sbjct: 7 TIGIPIKLLNEAQGHVVTLEITSGVVYRGKLLEAEDNMNVQLKDITVTARDG 58
>TAIR|locus:2030442 [details] [associations]
symbol:AT1G20580 "AT1G20580" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM;ISS] [GO:0005732 "small nucleolar
ribonucleoprotein complex" evidence=ISS] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0001510 "RNA
methylation" evidence=RCA] INTERPRO:IPR001163 EMBL:CP002684
GO:GO:0005829 GO:GO:0005730 EMBL:AC069251 GO:GO:0003676
GO:GO:0030529 InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 InterPro:IPR027141
PANTHER:PTHR23338 HSSP:P62314 KO:K11088 UniGene:At.51694
OMA:HEADGHI EMBL:AF412086 EMBL:AY093974 IPI:IPI00535052
RefSeq:NP_564119.1 UniGene:At.15483 UniGene:At.73171
ProteinModelPortal:Q9LM92 SMR:Q9LM92 STRING:Q9LM92 PRIDE:Q9LM92
EnsemblPlants:AT1G20580.1 GeneID:838647 KEGG:ath:AT1G20580
TAIR:At1g20580 InParanoid:Q9LM92 PhylomeDB:Q9LM92
ProtClustDB:CLSN2682747 Genevestigator:Q9LM92 Uniprot:Q9LM92
Length = 131
Score = 182 (69.1 bits), Expect = 3.8e-14, P = 3.8e-14
Identities = 30/52 (57%), Positives = 41/52 (78%)
Query: 2 SIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG 53
S+GIP+KLLHEA GHI+T E +G+L+RG ++E EDN NC + D+T T +DG
Sbjct: 4 SLGIPVKLLHEASGHIVTVELKSGELYRGSMIECEDNWNCQLEDITYTAKDG 55
>POMBASE|SPBC19C2.14 [details] [associations]
symbol:smd3 "Sm snRNP core protein Smd3" species:4896
"Schizosaccharomyces pombe" [GO:0000243 "commitment complex"
evidence=ISS] [GO:0000395 "mRNA 5'-splice site recognition"
evidence=IC] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=IDA] [GO:0005685 "U1 snRNP" evidence=IDA]
[GO:0006995 "cellular response to nitrogen starvation"
evidence=IMP] [GO:0045292 "mRNA cis splicing, via spliceosome"
evidence=ISS] [GO:0046540 "U4/U6 x U5 tri-snRNP complex"
evidence=ISS] [GO:0070317 "negative regulation of G0 to G1
transition" evidence=IMP] PomBase:SPBC19C2.14 INTERPRO:IPR001163
GO:GO:0070317 EMBL:CU329671 GO:GO:0003729 GenomeReviews:CU329671_GR
GO:GO:0006995 InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0000243
GO:GO:0046540 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
eggNOG:COG1958 InterPro:IPR027141 PANTHER:PTHR23338 GO:GO:0005685
GO:GO:0000395 HOGENOM:HOG000182712 KO:K11088 PIR:T39805
RefSeq:NP_595699.1 ProteinModelPortal:Q9UUC6 SMR:Q9UUC6
IntAct:Q9UUC6 STRING:Q9UUC6 EnsemblFungi:SPBC19C2.14.1
GeneID:2540884 KEGG:spo:SPBC19C2.14 OMA:VITIECK OrthoDB:EOG4285B6
NextBio:20802000 Uniprot:Q9UUC6
Length = 97
Score = 180 (68.4 bits), Expect = 6.2e-14, P = 6.2e-14
Identities = 32/47 (68%), Positives = 38/47 (80%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG 53
IKLLHE +GHI+T E NG +RGKL+EAEDNMNC M D++VT RDG
Sbjct: 5 IKLLHETQGHIVTMELENGSTYRGKLIEAEDNMNCQMRDISVTARDG 51
>TAIR|locus:2014589 [details] [associations]
symbol:SmD3 "AT1G76300" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM;ISS;IDA] [GO:0005732 "small nucleolar
ribonucleoprotein complex" evidence=ISS] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0016604 "nuclear body" evidence=IDA]
INTERPRO:IPR001163 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0005730 GO:GO:0003676 GO:GO:0030529 EMBL:AC009978
EMBL:AC012394 GO:GO:0016604 InterPro:IPR010920 SUPFAM:SSF50182
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958
InterPro:IPR027141 PANTHER:PTHR23338 HOGENOM:HOG000182712 KO:K11088
OMA:ESIPIKV ProtClustDB:CLSN2682747 EMBL:AF380651 EMBL:AY054149
EMBL:AY087251 IPI:IPI00524355 PIR:E96790 RefSeq:NP_177757.1
UniGene:At.16581 ProteinModelPortal:Q9S7E6 SMR:Q9S7E6 STRING:Q9S7E6
PaxDb:Q9S7E6 PRIDE:Q9S7E6 EnsemblPlants:AT1G76300.1 GeneID:843963
KEGG:ath:AT1G76300 TAIR:At1g76300 InParanoid:Q9S7E6
PhylomeDB:Q9S7E6 Genevestigator:Q9S7E6 Uniprot:Q9S7E6
Length = 128
Score = 170 (64.9 bits), Expect = 7.1e-13, P = 7.1e-13
Identities = 27/52 (51%), Positives = 41/52 (78%)
Query: 2 SIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG 53
S+GIP+KLLHE+ GHI++ E +G+L+RG ++E EDN NC + ++T T +DG
Sbjct: 4 SLGIPVKLLHESSGHIVSVEMKSGELYRGSMIECEDNWNCQLENITYTAKDG 55
>CGD|CAL0005718 [details] [associations]
symbol:SMD3 species:5476 "Candida albicans" [GO:0005685 "U1
snRNP" evidence=IEA] [GO:0071004 "U2-type prespliceosome"
evidence=IEA] [GO:0005682 "U5 snRNP" evidence=IEA] [GO:0000243
"commitment complex" evidence=IEA] [GO:0046540 "U4/U6 x U5
tri-snRNP complex" evidence=IEA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IEA] [GO:0070317 "negative regulation of G0
to G1 transition" evidence=IEA] [GO:0003729 "mRNA binding"
evidence=IEA] CGD:CAL0005718 INTERPRO:IPR001163 InterPro:IPR010920
SUPFAM:SSF50182 EMBL:AACQ01000202 EMBL:AACQ01000200 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958 InterPro:IPR027141
PANTHER:PTHR23338 HOGENOM:HOG000182712 KO:K11088 RefSeq:XP_711350.1
RefSeq:XP_711397.1 ProteinModelPortal:Q59NQ6 STRING:Q59NQ6
GeneID:3647011 GeneID:3647060 KEGG:cal:CaO19.11622
KEGG:cal:CaO19.4146 Uniprot:Q59NQ6
Length = 106
Score = 162 (62.1 bits), Expect = 5.0e-12, P = 5.0e-12
Identities = 29/49 (59%), Positives = 40/49 (81%)
Query: 1 MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVT 49
MS GIP++LL+EA+GHII+ E NGD +RGKL+E EDNMN ++ + T+T
Sbjct: 1 MSAGIPVRLLNEAQGHIISIELINGDTYRGKLLENEDNMNLSLYEATIT 49
>SGD|S000004137 [details] [associations]
symbol:SMD3 "Core Sm protein Sm D3" species:4932
"Saccharomyces cerevisiae" [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0000243 "commitment complex"
evidence=IPI] [GO:0005634 "nucleus" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0046540 "U4/U6 x U5 tri-snRNP complex" evidence=IDA]
[GO:0005682 "U5 snRNP" evidence=IDA] [GO:0005685 "U1 snRNP"
evidence=IDA] [GO:0071004 "U2-type prespliceosome" evidence=IDA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IPI]
[GO:0003729 "mRNA binding" evidence=IPI] SGD:S000004137
INTERPRO:IPR001163 GO:GO:0005737 GO:GO:0003729 GO:GO:0005682
EMBL:BK006945 EMBL:U53879 GO:GO:0000398 InterPro:IPR010920
SUPFAM:SSF50182 GO:GO:0000243 GO:GO:0046540 GO:GO:0071004
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958
InterPro:IPR027141 PANTHER:PTHR23338 GO:GO:0005685 EMBL:M65144
GeneTree:ENSGT00610000086153 HOGENOM:HOG000182712 KO:K11088
OMA:ESIPIKV OrthoDB:EOG4285B6 EMBL:Z73319 EMBL:AY558533 PIR:S29093
RefSeq:NP_013248.1 ProteinModelPortal:P43321 SMR:P43321
DIP:DIP-715N IntAct:P43321 MINT:MINT-517864 STRING:P43321
EnsemblFungi:YLR147C GeneID:850839 KEGG:sce:YLR147C CYGD:YLR147c
NextBio:967120 Genevestigator:P43321 GermOnline:YLR147C
Uniprot:P43321
Length = 101
Score = 148 (57.2 bits), Expect = 1.5e-10, P = 1.5e-10
Identities = 28/50 (56%), Positives = 37/50 (74%)
Query: 4 GIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG 53
GIP+KLL+EA+GHI++ E T G +RGKLVE+ED+MN + DV T G
Sbjct: 5 GIPVKLLNEAQGHIVSLELTTGATYRGKLVESEDSMNVQLRDVIATEPQG 54
>TAIR|locus:2180295 [details] [associations]
symbol:emb1644 "AT5G27720" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM;ISS] [GO:0005732 "small nucleolar
ribonucleoprotein complex" evidence=ISS] [GO:0009793 "embryo
development ending in seed dormancy" evidence=NAS]
INTERPRO:IPR001163 EMBL:CP002688 InterPro:IPR010920 SUPFAM:SSF50182
KO:K12623 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
InterPro:IPR027141 PANTHER:PTHR23338 OMA:NRNTFGG IPI:IPI00529680
RefSeq:NP_198124.1 UniGene:At.43840 ProteinModelPortal:F4K4E3
SMR:F4K4E3 PRIDE:F4K4E3 EnsemblPlants:AT5G27720.1 GeneID:832834
KEGG:ath:AT5G27720 Uniprot:F4K4E3
Length = 129
Score = 92 (37.4 bits), Expect = 0.00013, P = 0.00013
Identities = 18/49 (36%), Positives = 28/49 (57%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG 53
+P+ LL A+GH + E NG+ + G LV + MN + +V T +DG
Sbjct: 2 LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDG 50
>FB|FBgn0032240 [details] [associations]
symbol:CG17768 species:7227 "Drosophila melanogaster"
[GO:0017070 "U6 snRNA binding" evidence=ISS] INTERPRO:IPR001163
EMBL:AE014134 InterPro:IPR010920 SUPFAM:SSF50182 KO:K12623
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
GeneTree:ENSGT00610000086173 InterPro:IPR027141 PANTHER:PTHR23338
UniGene:Dm.13910 EMBL:BT044323 RefSeq:NP_001027236.1
RefSeq:NP_001188778.1 SMR:Q9VKW8 IntAct:Q9VKW8 MINT:MINT-774206
STRING:Q9VKW8 EnsemblMetazoa:FBtr0100253 EnsemblMetazoa:FBtr0304111
GeneID:3772012 KEGG:dme:Dmel_CG17768 UCSC:CG17768-RA
FlyBase:FBgn0032240 InParanoid:Q9VKW8 OMA:NQRAPRS NextBio:852113
Uniprot:Q9VKW8
Length = 154
Score = 91 (37.1 bits), Expect = 0.00017, P = 0.00017
Identities = 18/49 (36%), Positives = 27/49 (55%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG 53
+P+ LL A+ H + E NG+ + G LV + MN + DV T +DG
Sbjct: 2 LPLSLLKTAQSHPMLVELKNGETYNGHLVSCDSWMNINLRDVICTSKDG 50
>UNIPROTKB|Q3ZBK6 [details] [associations]
symbol:LSM4 "U6 snRNA-associated Sm-like protein LSm4"
species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
INTERPRO:IPR001163 GO:GO:0005634 GO:GO:0008380 GO:GO:0006397
GO:GO:0003723 GO:GO:0030529 InterPro:IPR010920 SUPFAM:SSF50182
KO:K12623 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
eggNOG:COG1958 HOVERGEN:HBG000486 EMBL:BC103243 IPI:IPI00718624
RefSeq:NP_001030513.1 UniGene:Bt.49560 ProteinModelPortal:Q3ZBK6
SMR:Q3ZBK6 STRING:Q3ZBK6 PRIDE:Q3ZBK6 Ensembl:ENSBTAT00000011312
GeneID:613634 KEGG:bta:613634 CTD:25804
GeneTree:ENSGT00610000086173 HOGENOM:HOG000182713 InParanoid:Q3ZBK6
OMA:GMQQQKQ OrthoDB:EOG4T784T NextBio:20898680 InterPro:IPR027141
PANTHER:PTHR23338 Uniprot:Q3ZBK6
Length = 139
Score = 91 (37.1 bits), Expect = 0.00017, P = 0.00017
Identities = 18/49 (36%), Positives = 28/49 (57%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG 53
+P+ LL A+ H + E NG+ + G LV ++ MN + +V T RDG
Sbjct: 2 LPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDG 50
>UNIPROTKB|Q9Y4Z0 [details] [associations]
symbol:LSM4 "U6 snRNA-associated Sm-like protein LSm4"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0030532 "small
nuclear ribonucleoprotein complex" evidence=TAS] [GO:0005688 "U6
snRNP" evidence=TAS] [GO:0000288 "nuclear-transcribed mRNA
catabolic process, deadenylation-dependent decay" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
[GO:0016071 "mRNA metabolic process" evidence=TAS] [GO:0043928
"exonucleolytic nuclear-transcribed mRNA catabolic process involved
in deadenylation-dependent decay" evidence=TAS] Reactome:REACT_71
Reactome:REACT_21257 INTERPRO:IPR001163 GO:GO:0005829 GO:GO:0008380
GO:GO:0006397 GO:GO:0003723 InterPro:IPR010920 SUPFAM:SSF50182
GO:GO:0043928 GO:GO:0005688 KO:K12623 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958 HOVERGEN:HBG000486
CTD:25804 HOGENOM:HOG000182713 OMA:GMQQQKQ OrthoDB:EOG4T784T
InterPro:IPR027141 PANTHER:PTHR23338 EMBL:AJ238096 EMBL:AF182290
EMBL:AF117235 EMBL:AF251218 EMBL:BC000387 EMBL:BC003652
EMBL:BC022198 EMBL:BC023665 IPI:IPI00294955 RefSeq:NP_036453.1
UniGene:Hs.515255 ProteinModelPortal:Q9Y4Z0 SMR:Q9Y4Z0
DIP:DIP-31209N IntAct:Q9Y4Z0 MINT:MINT-1469332 STRING:Q9Y4Z0
PhosphoSite:Q9Y4Z0 DMDM:10720082 PaxDb:Q9Y4Z0 PeptideAtlas:Q9Y4Z0
PRIDE:Q9Y4Z0 DNASU:25804 Ensembl:ENST00000252816 GeneID:25804
KEGG:hsa:25804 UCSC:uc002niq.3 GeneCards:GC19M018417
HGNC:HGNC:17259 HPA:HPA040932 MIM:607284 neXtProt:NX_Q9Y4Z0
PharmGKB:PA134906569 InParanoid:Q9Y4Z0 PhylomeDB:Q9Y4Z0
ChiTaRS:LSM4 GenomeRNAi:25804 NextBio:47015 Bgee:Q9Y4Z0
CleanEx:HS_LSM4 Genevestigator:Q9Y4Z0 GermOnline:ENSG00000130520
Uniprot:Q9Y4Z0
Length = 139
Score = 91 (37.1 bits), Expect = 0.00017, P = 0.00017
Identities = 18/49 (36%), Positives = 28/49 (57%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG 53
+P+ LL A+ H + E NG+ + G LV ++ MN + +V T RDG
Sbjct: 2 LPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDG 50
>MGI|MGI:1354692 [details] [associations]
symbol:Lsm4 "LSM4 homolog, U6 small nuclear RNA associated
(S. cerevisiae)" species:10090 "Mus musculus" [GO:0003674
"molecular_function" evidence=ND] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=ISS] [GO:0005681 "spliceosomal complex"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] MGI:MGI:1354692
INTERPRO:IPR001163 GO:GO:0005737 GO:GO:0005654 GO:GO:0008380
GO:GO:0006397 GO:GO:0005681 GO:GO:0003723 InterPro:IPR010920
SUPFAM:SSF50182 KO:K12623 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 eggNOG:COG1958 HOVERGEN:HBG000486 CTD:25804
OrthoDB:EOG4T784T InterPro:IPR027141 PANTHER:PTHR23338
EMBL:AJ249439 IPI:IPI00134784 RefSeq:NP_056631.2 UniGene:Mm.248188
ProteinModelPortal:Q9QXA5 SMR:Q9QXA5 STRING:Q9QXA5
PhosphoSite:Q9QXA5 PaxDb:Q9QXA5 PRIDE:Q9QXA5 GeneID:50783
KEGG:mmu:50783 InParanoid:Q9QXA5 NextBio:307741 Bgee:Q9QXA5
Genevestigator:Q9QXA5 GermOnline:ENSMUSG00000031848 Uniprot:Q9QXA5
Length = 137
Score = 91 (37.1 bits), Expect = 0.00017, P = 0.00017
Identities = 18/49 (36%), Positives = 28/49 (57%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG 53
+P+ LL A+ H + E NG+ + G LV ++ MN + +V T RDG
Sbjct: 2 LPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDG 50
>ZFIN|ZDB-GENE-040426-1652 [details] [associations]
symbol:lsm4 "LSM4 homolog, U6 small nuclear RNA
associated (S. cerevisiae)" species:7955 "Danio rerio" [GO:0003674
"molecular_function" evidence=ND] INTERPRO:IPR001163
ZFIN:ZDB-GENE-040426-1652 InterPro:IPR010920 SUPFAM:SSF50182
KO:K12623 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
eggNOG:COG1958 HOVERGEN:HBG000486 CTD:25804
GeneTree:ENSGT00610000086173 HOGENOM:HOG000182713 OMA:GMQQQKQ
OrthoDB:EOG4T784T InterPro:IPR027141 PANTHER:PTHR23338
EMBL:BX936438 EMBL:BC059435 EMBL:BC062285 IPI:IPI00505813
RefSeq:NP_956990.1 UniGene:Dr.159006 STRING:Q6P6E4
Ensembl:ENSDART00000037824 GeneID:393669 KEGG:dre:393669
InParanoid:Q6P6E4 NextBio:20814675 Uniprot:Q6P6E4
Length = 143
Score = 91 (37.1 bits), Expect = 0.00017, P = 0.00017
Identities = 18/49 (36%), Positives = 28/49 (57%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG 53
+P+ LL A+ H + E NG+ + G LV ++ MN + +V T RDG
Sbjct: 2 LPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDG 50
>WB|WBGene00003078 [details] [associations]
symbol:lsm-4 species:6239 "Caenorhabditis elegans"
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
[GO:0010171 "body morphogenesis" evidence=IMP] [GO:0040011
"locomotion" evidence=IMP] [GO:0009792 "embryo development ending
in birth or egg hatching" evidence=IMP] [GO:0008340 "determination
of adult lifespan" evidence=IMP] [GO:0006898 "receptor-mediated
endocytosis" evidence=IMP] [GO:0040027 "negative regulation of
vulval development" evidence=IMP] [GO:0007281 "germ cell
development" evidence=IMP] INTERPRO:IPR001163 GO:GO:0005634
GO:GO:0008340 GO:GO:0009792 GO:GO:0006898 GO:GO:0040010
GO:GO:0008380 GO:GO:0006397 GO:GO:0010171 GO:GO:0040011
GO:GO:0003723 GO:GO:0030529 GO:GO:0007281 GO:GO:0040027
InterPro:IPR010920 SUPFAM:SSF50182 KO:K12623 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958
GeneTree:ENSGT00610000086173 HOGENOM:HOG000182713 OMA:GMQQQKQ
InterPro:IPR027141 PANTHER:PTHR23338 EMBL:FO080735 PIR:T16234
RefSeq:NP_495514.1 ProteinModelPortal:Q19952 SMR:Q19952
IntAct:Q19952 STRING:Q19952 PaxDb:Q19952 EnsemblMetazoa:F32A5.7
GeneID:174193 KEGG:cel:CELE_F32A5.7 UCSC:F32A5.7 CTD:3772280
WormBase:F32A5.7 InParanoid:Q19952 NextBio:882941 Uniprot:Q19952
Length = 123
Score = 85 (35.0 bits), Expect = 0.00073, P = 0.00072
Identities = 17/49 (34%), Positives = 26/49 (53%)
Query: 5 IPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG 53
+P+ LL A+ H + E NG+ + G L + MN + DV T +DG
Sbjct: 3 LPLSLLKTAQNHPMLVELKNGETYNGHLKACDSWMNIHLVDVIFTSKDG 51
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.320 0.136 0.428 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 79 79 0.00091 102 3 11 22 0.41 29
29 0.39 30
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 26
No. of states in DFA: 531 (57 KB)
Total size of DFA: 110 KB (2075 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 8.12u 0.09s 8.21t Elapsed: 00:00:03
Total cpu time: 8.12u 0.09s 8.21t Elapsed: 00:00:03
Start: Thu Aug 15 13:50:47 2013 End: Thu Aug 15 13:50:50 2013