RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy14196
(79 letters)
>d1d3ba_ b.38.1.1 (A:) D3 core SNRNP protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 72
Score = 66.3 bits (162), Expect = 4e-17
Identities = 36/50 (72%), Positives = 47/50 (94%)
Query: 4 GIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG 53
G+PIK+LHEAEGHI+TCET G+++RGKL+EAEDNMNC M+++TVT+RDG
Sbjct: 1 GVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDG 50
>d1b34a_ b.38.1.1 (A:) D1 core SNRNP protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 80
Score = 56.2 bits (136), Expect = 5e-13
Identities = 10/47 (21%), Positives = 21/47 (44%)
Query: 7 IKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG 53
++ L + +T E NG G + + +MN + V +T ++
Sbjct: 3 VRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNR 49
>d1mgqa_ b.38.1.1 (A:) Archaeal homoheptameric Sm protein
{Archaeon Methanobacterium thermoautotrophicum [TaxId:
145262]}
Length = 74
Score = 55.5 bits (134), Expect = 8e-13
Identities = 9/54 (16%), Positives = 19/54 (35%)
Query: 1 MSIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGT 54
+++ P+ L + + + FRG L + +MN + D
Sbjct: 2 VNVQRPLDALGNSLNSPVIIKLKGDREFRGVLKSFDLHMNLVLNDAEELEDGEV 55
>d1th7a1 b.38.1.1 (A:3-78) Archaeal homoheptameric Sm protein
{Sulfolobus solfataricus [TaxId: 2287]}
Length = 76
Score = 52.8 bits (127), Expect = 1e-11
Identities = 11/49 (22%), Positives = 22/49 (44%)
Query: 6 PIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGT 54
K+L E+ +++ + RG L + +MN ++D DG+
Sbjct: 8 AHKVLAESLNNLVLVKLKGNKEVRGMLRSYDQHMNLVLSDSEEIQSDGS 56
>d1ljoa_ b.38.1.1 (A:) Archaeal homoheptameric Sm protein
{Archaeon Archaeoglobus fulgidus, AF-Sm2 [TaxId: 2234]}
Length = 75
Score = 52.4 bits (126), Expect = 1e-11
Identities = 11/53 (20%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
Query: 2 SIGIPIKLLHEAEGHIITCETTNGDL-FRGKLVEAEDNMNCAMADVTVTFRDG 53
++ +P +++ G II E + GKL +D MN + + +
Sbjct: 2 AMVLPNQMVKSMVGKIIRVEMKGEENQLVGKLEGVDDYMNLYLTNAMECKGEE 54
>d1h641_ b.38.1.1 (1:) Archaeal homoheptameric Sm protein
{Archaeon Pyrococcus abyssi [TaxId: 29292]}
Length = 71
Score = 51.6 bits (124), Expect = 2e-11
Identities = 10/48 (20%), Positives = 22/48 (45%)
Query: 6 PIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG 53
P+ ++H + + G FRG+L+ + ++N +AD +
Sbjct: 3 PLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVLADAEMIQDGE 50
>d1i4k1_ b.38.1.1 (1:) Archaeal homoheptameric Sm protein
{Archaeon Archaeoglobus fulgidus, AF-Sm1 [TaxId: 2234]}
Length = 72
Score = 51.2 bits (123), Expect = 3e-11
Identities = 10/48 (20%), Positives = 18/48 (37%)
Query: 6 PIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG 53
P+ +L+ + + G FRG L + +MN + D
Sbjct: 4 PLDVLNRSLKSPVIVRLKGGREFRGTLDGYDIHMNLVLLDAEEIQNGE 51
>d1m5q1_ b.38.1.1 (1:) Sm-Like archaeal protein Smap3 {Archaeon
Pyrobaculum aerophilum [TaxId: 13773]}
Length = 127
Score = 48.2 bits (115), Expect = 2e-09
Identities = 8/44 (18%), Positives = 22/44 (50%)
Query: 9 LLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRD 52
L+ G + +NG++++G L ++ +N +A+ + +
Sbjct: 4 ELNNLLGREVQVVLSNGEVYKGVLHAVDNQLNIVLANASNKAGE 47
>d1i8fa_ b.38.1.1 (A:) Archaeal homoheptameric Sm protein
{Archaeon Pyrobaculum aerophilum [TaxId: 13773]}
Length = 71
Score = 45.9 bits (109), Expect = 4e-09
Identities = 9/52 (17%), Positives = 19/52 (36%)
Query: 10 LHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDGTYYLPALV 61
L ++ G + + + RG L + ++N + D Y +V
Sbjct: 7 LQDSIGKQVLVKLRDSHEIRGILRSFDQHVNLLLEDAEEIIDGNVYKRGTMV 58
>d1n9ra_ b.38.1.1 (A:) Small nuclear ribonucleoprotein F, Smf
{Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 68
Score = 36.2 bits (84), Expect = 3e-05
Identities = 7/47 (14%), Positives = 16/47 (34%), Gaps = 1/47 (2%)
Query: 10 LHEAEGHIITCETTNGDL-FRGKLVEAEDNMNCAMADVTVTFRDGTY 55
L H + + +RG LV ++ N + + ++
Sbjct: 1 LKGLVNHRVGVKLKFNSTEYRGTLVSTDNYFNLQLNEAEEFVAGVSH 47
>d2fwka1 b.38.1.1 (A:24-115) U6 snRNA-associated sm-like protein
LSM5 {Cryptosporidium parvum [TaxId: 5807]}
Length = 92
Score = 34.8 bits (80), Expect = 1e-04
Identities = 11/52 (21%), Positives = 21/52 (40%)
Query: 2 SIGIPIKLLHEAEGHIITCETTNGDLFRGKLVEAEDNMNCAMADVTVTFRDG 53
+I +P+ L+ + G+ I F G L ++ +N + DV
Sbjct: 2 NIILPLALIDKCIGNRIYVVMKGDKEFSGVLRGFDEYVNMVLDDVQEYGFKA 53
>d2fug31 b.52.2.2 (3:686-767) NADH-quinone oxidoreductase chain 3,
Nqo3, C-terminal domain {Thermus thermophilus [TaxId:
274]}
Length = 82
Score = 24.4 bits (53), Expect = 0.96
Identities = 10/32 (31%), Positives = 10/32 (31%)
Query: 33 VEAEDNMNCAMADVTVTFRDGTYYLPALVPIA 64
VE A G YL AL P A
Sbjct: 51 VETPFGRVEARVVHREDVPKGHLYLSALGPAA 82
>d1ewna_ b.46.1.2 (A:) 3-methyladenine DNA glycosylase (AAG, ANPG,
MPG) {Human (Homo sapiens) [TaxId: 9606]}
Length = 214
Score = 24.5 bits (53), Expect = 1.3
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 15 GHIITCETTNGDLFRGKLVEAE 36
G ++ NG RG++VE +
Sbjct: 23 GQVLVRRLPNGTELRGRIVETQ 44
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.136 0.428
Gapped
Lambda K H
0.267 0.0615 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 312,586
Number of extensions: 11650
Number of successful extensions: 40
Number of sequences better than 10.0: 1
Number of HSP's gapped: 39
Number of HSP's successfully gapped: 15
Length of query: 79
Length of database: 2,407,596
Length adjustment: 45
Effective length of query: 34
Effective length of database: 1,789,746
Effective search space: 60851364
Effective search space used: 60851364
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.1 bits)