BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14197
(178 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3G9W|A Chain A, Crystal Structure Of Talin2 F2-f3 In Complex With The
Integrin Beta1d Cytoplasmic Tail
pdb|3G9W|B Chain B, Crystal Structure Of Talin2 F2-f3 In Complex With The
Integrin Beta1d Cytoplasmic Tail
Length = 223
Score = 61.2 bits (147), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 81/156 (51%), Gaps = 11/156 (7%)
Query: 12 PASLDICAEDYVSSRYIKKLRSKLSQRILEAHANVKDLGLTEAKLSYIRAWQSLPDYGLT 71
P LD+ ++++ YIK+ ++ +RI + H N ++ EAK+ Y++ +SL YG++
Sbjct: 74 PGFLDL--KEFLPKEYIKQRGAE--KRIFQEHKNCGEMSEIEAKVKYVKLARSLRTYGVS 129
Query: 72 LFVIKPMGHKKEE----LLGVTPSRLMRMELSSGDHVRTWRYDTVKAWNVNWEIKHMMLQ 127
F++K K + LLG+T +MR++ + + ++ W TVK W + K L
Sbjct: 130 FFLVKEKMKGKNKLVPRLLGITKDSVMRVDEKTKEVLQEWPLTTVKRWAAS--PKSFTLD 187
Query: 128 LTD-GNFIFECQSADCKVVHEFIGGYIFLSMRSKDA 162
+ + Q+ + + + + I GYI + ++ K +
Sbjct: 188 FGEYQESYYSVQTTEGEQISQLIAGYIDIILKKKQS 223
>pdb|1Y19|B Chain B, Structural Basis For Phosphatidylinositol Phosphate Kinase
Type I-Gamma Binding To Talin At Focal Adhesions
pdb|1Y19|D Chain D, Structural Basis For Phosphatidylinositol Phosphate Kinase
Type I-Gamma Binding To Talin At Focal Adhesions
pdb|1Y19|F Chain F, Structural Basis For Phosphatidylinositol Phosphate Kinase
Type I-Gamma Binding To Talin At Focal Adhesions
pdb|1Y19|H Chain H, Structural Basis For Phosphatidylinositol Phosphate Kinase
Type I-Gamma Binding To Talin At Focal Adhesions
pdb|1Y19|J Chain J, Structural Basis For Phosphatidylinositol Phosphate Kinase
Type I-Gamma Binding To Talin At Focal Adhesions
pdb|1Y19|L Chain L, Structural Basis For Phosphatidylinositol Phosphate Kinase
Type I-Gamma Binding To Talin At Focal Adhesions
Length = 202
Score = 61.2 bits (147), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 76/148 (51%), Gaps = 10/148 (6%)
Query: 20 EDYVSSRYIKKLRSKLSQRILEAHANVKDLGLTEAKLSYIRAWQSLPDYGLTLFVIKPMG 79
+D++ Y+K+ K ++I +AH N + EAK+ Y++ +SL YG++ F++K
Sbjct: 55 KDFLPKEYVKQ---KGERKIFQAHKNCGQMSEIEAKVRYVKLARSLKTYGVSFFLVKEKM 111
Query: 80 HKKEE----LLGVTPSRLMRMELSSGDHVRTWRYDTVKAWNVNWEIKHMMLQLTD-GNFI 134
K + LLG+T +MR++ + + ++ W +K W + K L D +
Sbjct: 112 KGKNKLVPRLLGITKECVMRVDEKTKEVIQEWSLTNIKRWAAS--PKSFTLDFGDYQDGY 169
Query: 135 FECQSADCKVVHEFIGGYIFLSMRSKDA 162
+ Q+ + + + + I GYI + ++ K +
Sbjct: 170 YSVQTTEGEQIAQLIAGYIDIILKKKKS 197
>pdb|4F7G|A Chain A, Crystal Structure Of Talin Autoinhibition Complex
Length = 222
Score = 61.2 bits (147), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 76/148 (51%), Gaps = 10/148 (6%)
Query: 20 EDYVSSRYIKKLRSKLSQRILEAHANVKDLGLTEAKLSYIRAWQSLPDYGLTLFVIKPMG 79
+D++ Y+K+ K ++I +AH N + EAK+ Y++ +SL YG++ F++K
Sbjct: 80 KDFLPKEYVKQ---KGERKIFQAHKNCGQMSEIEAKVRYVKLARSLKTYGVSFFLVKEKM 136
Query: 80 HKKEE----LLGVTPSRLMRMELSSGDHVRTWRYDTVKAWNVNWEIKHMMLQLTD-GNFI 134
K + LLG+T +MR++ + + ++ W +K W + K L D +
Sbjct: 137 KGKNKLVPRLLGITKECVMRVDEKTKEVIQEWSLTNIKRWAAS--PKSFTLDFGDYQDGY 194
Query: 135 FECQSADCKVVHEFIGGYIFLSMRSKDA 162
+ Q+ + + + + I GYI + ++ K +
Sbjct: 195 YSVQTTEGEQIAQLIAGYIDIILKKKKS 222
>pdb|1MK7|B Chain B, Crystal Structure Of An Integrin Beta3-Talin Chimera
pdb|1MK7|D Chain D, Crystal Structure Of An Integrin Beta3-Talin Chimera
pdb|1MK9|B Chain B, Crystal Structure Of An Integrin Beta3-Talin Chimera
pdb|1MK9|D Chain D, Crystal Structure Of An Integrin Beta3-Talin Chimera
pdb|1MK9|F Chain F, Crystal Structure Of An Integrin Beta3-Talin Chimera
pdb|1MK9|H Chain H, Crystal Structure Of An Integrin Beta3-Talin Chimera
Length = 192
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 75/147 (51%), Gaps = 12/147 (8%)
Query: 12 PASLDICAEDYVSSRYIKKLRSKLSQRILEAHANVKDLGLTEAKLSYIRAWQSLPDYGLT 71
P L++ +D++ YIK+ K ++I AH N ++ EAK+ Y++ +SL YG++
Sbjct: 49 PGFLEL--KDFLPKEYIKQ---KGERKIFMAHKNCGNMSEIEAKVRYVKLARSLKTYGVS 103
Query: 72 LFVIKPMGHKKEE----LLGVTPSRLMRMELSSGDHVRTWRYDTVKAWNVNWEIKHMMLQ 127
F++K K + LLG+T +MR++ + + ++ W +K W + K L
Sbjct: 104 FFLVKEKMKGKNKLVPRLLGITKECVMRVDEKTKEVIQEWSLTNIKRWAAS--PKSFTLD 161
Query: 128 LTD-GNFIFECQSADCKVVHEFIGGYI 153
D + + Q+ + + + + I GYI
Sbjct: 162 FGDYQDGYYSVQTTEGEQIAQLIAGYI 188
>pdb|3IVF|A Chain A, Crystal Structure Of The Talin Head Ferm Domain
Length = 371
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 71/139 (51%), Gaps = 10/139 (7%)
Query: 20 EDYVSSRYIKKLRSKLSQRILEAHANVKDLGLTEAKLSYIRAWQSLPDYGLTLFVIKPMG 79
+D++ Y+K+ K ++I +AH N + EAK+ Y++ +SL YG++ F++K
Sbjct: 234 KDFLPKEYVKQ---KGERKIFQAHKNCGQMSEIEAKVRYVKLARSLKTYGVSFFLVKEKM 290
Query: 80 HKKEE----LLGVTPSRLMRMELSSGDHVRTWRYDTVKAWNVNWEIKHMMLQLTD-GNFI 134
K + LLG+T +MR++ + + ++ W +K W + K L D +
Sbjct: 291 KGKNKLVPRLLGITKECVMRVDEKTKEVIQEWSLTNIKRWAAS--PKSFTLDFGDYQDGY 348
Query: 135 FECQSADCKVVHEFIGGYI 153
+ Q+ + + + + I GYI
Sbjct: 349 YSVQTTEGEQIAQLIAGYI 367
>pdb|1MIZ|B Chain B, Crystal Structure Of An Integrin Beta3-Talin Chimera
Length = 201
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 75/147 (51%), Gaps = 12/147 (8%)
Query: 12 PASLDICAEDYVSSRYIKKLRSKLSQRILEAHANVKDLGLTEAKLSYIRAWQSLPDYGLT 71
P L++ +D++ YIK+ K ++I AH N ++ EAK+ Y++ +SL YG++
Sbjct: 58 PGFLEL--KDFLPKEYIKQ---KGERKIFMAHKNCGNMSEIEAKVRYVKLARSLKTYGVS 112
Query: 72 LFVIKPMGHKKEE----LLGVTPSRLMRMELSSGDHVRTWRYDTVKAWNVNWEIKHMMLQ 127
F++K K + LLG+T +MR++ + + ++ W +K W + K L
Sbjct: 113 FFLVKEKMKGKNKLVPRLLGITKECVMRVDEKTKEVIQEWSLTNIKRWAAS--PKSFTLD 170
Query: 128 LTD-GNFIFECQSADCKVVHEFIGGYI 153
D + + Q+ + + + + I GYI
Sbjct: 171 FGDYQDGYYSVQTTEGEQIAQLIAGYI 197
>pdb|1MIX|A Chain A, Crystal Structure Of A Ferm Domain Of Talin
Length = 206
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 75/147 (51%), Gaps = 12/147 (8%)
Query: 12 PASLDICAEDYVSSRYIKKLRSKLSQRILEAHANVKDLGLTEAKLSYIRAWQSLPDYGLT 71
P L++ +D++ YIK+ K ++I AH N ++ EAK+ Y++ +SL YG++
Sbjct: 63 PGFLEL--KDFLPKEYIKQ---KGERKIFMAHKNCGNMSEIEAKVRYVKLARSLKTYGVS 117
Query: 72 LFVIKPMGHKKEE----LLGVTPSRLMRMELSSGDHVRTWRYDTVKAWNVNWEIKHMMLQ 127
F++K K + LLG+T +MR++ + + ++ W +K W + K L
Sbjct: 118 FFLVKEKMKGKNKLVPRLLGITKECVMRVDEKTKEVIQEWSLTNIKRWAAS--PKSFTLD 175
Query: 128 LTD-GNFIFECQSADCKVVHEFIGGYI 153
D + + Q+ + + + + I GYI
Sbjct: 176 FGDYQDGYYSVQTTEGEQIAQLIAGYI 202
>pdb|2G35|A Chain A, Nmr Structure Of Talin-Ptb In Complex With Pipki
Length = 100
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 49/101 (48%), Gaps = 7/101 (6%)
Query: 65 LPDYGLTLFVIKPMGHKKEEL----LGVTPSRLMRMELSSGDHVRTWRYDTVKAWNVNWE 120
L YG++ F++K K +L LG+T +MR++ + + ++ W +K W +
Sbjct: 1 LKTYGVSFFLVKEKMKGKNKLVPRLLGITKECVMRVDEKTKEVIQEWSLTNIKRWAAS-- 58
Query: 121 IKHMMLQLTD-GNFIFECQSADCKVVHEFIGGYIFLSMRSK 160
K L D + + Q+ + + + + I GYI + ++ K
Sbjct: 59 PKSFTLDFGDYQDGYYSVQTTEGEQIAQLIAGYIDIILKKK 99
>pdb|3BIN|A Chain A, Structure Of The Dal-1 And Tslc1 (372-383) Complex
Length = 283
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 55/119 (46%), Gaps = 6/119 (5%)
Query: 16 DICAEDYVSS-RYIKKLRSKLSQRILEAHANVKDLGLTEAKLSYIRAWQSLPDYGLTLFV 74
D C DY+S R+ +L +++E H + + + EA++ ++ + L YG+ L
Sbjct: 136 DECGSDYISEFRFAPNHTKELEDKVIELHKSHRGMTPAEAEMHFLENAKKLSMYGVDLHH 195
Query: 75 IKPMGHKKEELLGVTPSRLMRMELSSGDHVRTWRYDTVKAWNVNWEIKHMMLQLTDGNF 133
K E +LGV S L L D +R R+ K ++++ + +++ G F
Sbjct: 196 AKD-SEGVEIMLGVCASGL----LIYRDRLRINRFAWPKVLKISYKRNNFYIKIRPGEF 249
>pdb|2HE7|A Chain A, Ferm Domain Of Epb41l3 (Dal-1)
Length = 283
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 55/119 (46%), Gaps = 6/119 (5%)
Query: 16 DICAEDYVSS-RYIKKLRSKLSQRILEAHANVKDLGLTEAKLSYIRAWQSLPDYGLTLFV 74
D C DY+S R+ +L +++E H + + + EA++ ++ + L YG+ L
Sbjct: 136 DECGSDYISEFRFAPNHTKELEDKVIELHKSHRGMTPAEAEMHFLENAKKLSMYGVDLHH 195
Query: 75 IKPMGHKKEELLGVTPSRLMRMELSSGDHVRTWRYDTVKAWNVNWEIKHMMLQLTDGNF 133
K E +LGV S L L D +R R+ K ++++ + +++ G F
Sbjct: 196 AKD-SEGVEIMLGVCASGL----LIYRDRLRINRFAWPKVLKISYKRNNFYIKIRPGEF 249
>pdb|2H7D|A Chain A, Solution Structure Of The Talin F3 Domain In Complex With
A Chimeric Beta3 Integrin-Pip Kinase Peptide
pdb|2H7E|A Chain A, Solution Structure Of The Talin F3 Domain In Complex With
A Chimeric Beta3 Integrin-Pip Kinase Peptide- Minimized
Average Structure
Length = 101
Score = 35.8 bits (81), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/99 (22%), Positives = 48/99 (48%), Gaps = 7/99 (7%)
Query: 69 GLTLFVIKPMGHKKEEL----LGVTPSRLMRMELSSGDHVRTWRYDTVKAWNVNWEIKHM 124
G++ F++K K +L LG+T +MR++ + + ++ W +K W + K
Sbjct: 5 GVSFFLVKEKMKGKNKLVPRLLGITKESVMRVDEKTKEVIQEWSLTNIKRWAAS--PKSF 62
Query: 125 MLQLTD-GNFIFECQSADCKVVHEFIGGYIFLSMRSKDA 162
L D + + Q+ + + + + I GYI + ++ K +
Sbjct: 63 TLDFGDYQDGYYSVQTTEGEQIAQLIAGYIDIILKKKKS 101
>pdb|2HRJ|A Chain A, Nmr Solution Structure Of The F2 Subdomain Of Talin
Length = 121
Score = 34.3 bits (77), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 33/58 (56%), Gaps = 5/58 (8%)
Query: 12 PASLDICAEDYVSSRYIKKLRSKLSQRILEAHANVKDLGLTEAKLSYIRAWQSLPDYG 69
P L++ +D++ YIK+ K ++I AH N ++ EAK+ Y++ +SL YG
Sbjct: 69 PGFLEL--KDFLPKEYIKQ---KGERKIFMAHKNCGNMSEIEAKVRYVKLARSLKTYG 121
>pdb|2K00|A Chain A, Solution Structure Of The Talin F3 In Complex With Layilin
Cytodomain
Length = 92
Score = 32.3 bits (72), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 43/90 (47%), Gaps = 7/90 (7%)
Query: 69 GLTLFVIKPMGHKKEEL----LGVTPSRLMRMELSSGDHVRTWRYDTVKAWNVNWEIKHM 124
G++ F++K K +L LG+T +MR++ + + ++ W +K W + K
Sbjct: 1 GVSFFLVKEKMKGKNKLVPRLLGITKECVMRVDEKTKEVIQEWSLTNIKRWAAS--PKSF 58
Query: 125 MLQLTD-GNFIFECQSADCKVVHEFIGGYI 153
L D + + Q+ + + + + I GYI
Sbjct: 59 TLDFGDYQDGYYSVQTTEGEQIAQLIAGYI 88
>pdb|2KGX|B Chain B, Haddock Structure Of The Talin F3 Domain In Complex With
Talin 1655-1822
Length = 91
Score = 31.6 bits (70), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
Query: 85 LLGVTPSRLMRMELSSGDHVRTWRYDTVKAWNVNWEIKHMMLQLTD-GNFIFECQSADCK 143
LLG+T +MR++ + + ++ W +K W + K L D + + Q+ + +
Sbjct: 19 LLGITKESVMRVDEKTKEVIQEWSLTNIKRWAAS--PKSFTLDFGDYQDGYYSVQTTEGE 76
Query: 144 VVHEFIGGYIFLSMR 158
+ + I GYI + ++
Sbjct: 77 QIAQLIAGYIDIILK 91
>pdb|3QIJ|A Chain A, Primitive-Monoclinic Crystal Structure Of The Ferm Domain
Of Protein 4.1r
pdb|3QIJ|B Chain B, Primitive-Monoclinic Crystal Structure Of The Ferm Domain
Of Protein 4.1r
Length = 296
Score = 30.0 bits (66), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 53/113 (46%), Gaps = 6/113 (5%)
Query: 21 DYVSSRYIKKLRSK-LSQRILEAHANVKDLGLTEAKLSYIRAWQSLPDYGLTLFVIKPMG 79
DYVS + ++K L ++++E H + + + +A L ++ + L YG+ L K +
Sbjct: 156 DYVSDFKLAPNQTKELEEKVMELHKSYRSMTPAQADLEFLENAKKLSMYGVDLHKAKDL- 214
Query: 80 HKKEELLGVTPSRLMRMELSSGDHVRTWRYDTVKAWNVNWEIKHMMLQLTDGN 132
+ +LGV S L L D +R R+ K ++++ +++ G
Sbjct: 215 EGVDIILGVCSSGL----LVYKDKLRINRFPWPKVLKISYKRSSFFIKIRPGE 263
>pdb|1GG3|A Chain A, Crystal Structure Of The Protein 4.1r Membrane Binding
Domain
pdb|1GG3|B Chain B, Crystal Structure Of The Protein 4.1r Membrane Binding
Domain
pdb|1GG3|C Chain C, Crystal Structure Of The Protein 4.1r Membrane Binding
Domain
Length = 279
Score = 30.0 bits (66), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 53/113 (46%), Gaps = 6/113 (5%)
Query: 21 DYVSSRYIKKLRSK-LSQRILEAHANVKDLGLTEAKLSYIRAWQSLPDYGLTLFVIKPMG 79
DYVS + ++K L ++++E H + + + +A L ++ + L YG+ L K +
Sbjct: 139 DYVSDFKLAPNQTKELEEKVMELHKSYRSMTPAQADLEFLENAKKLSMYGVDLHKAKDL- 197
Query: 80 HKKEELLGVTPSRLMRMELSSGDHVRTWRYDTVKAWNVNWEIKHMMLQLTDGN 132
+ +LGV S L L D +R R+ K ++++ +++ G
Sbjct: 198 EGVDIILGVCSSGL----LVYKDKLRINRFPWPKVLKISYKRSSFFIKIRPGE 246
>pdb|4F2F|A Chain A, Crystal Structure Of The Metal Binding Domain (mbd) Of The
Streptococcus Pneumoniae D39 Cu(i) Exporting P-type
Atpase Copa With Cu(i)
Length = 100
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 47/90 (52%), Gaps = 7/90 (7%)
Query: 28 IKKLRSKLSQRILEAHANVKDLGLTEAKLSYIRAWQSLPDYGLTLF----VIKPMGHKKE 83
I+K+R + + AH ++ G+ A++++ RA S Y LF +++P+G +E
Sbjct: 14 IQKIRIQAEKGYHPAHIQLQK-GIP-AEITFHRATPS-NCYKEILFEEEGILEPIGVDEE 70
Query: 84 ELLGVTPSRLMRMELSSGDHVRTWRYDTVK 113
+++ TP L R E S G ++ Y V+
Sbjct: 71 KVIRFTPQELGRHEFSCGMKMQKGSYTVVE 100
>pdb|1IGR|A Chain A, Type 1 Insulin-Like Growth Factor Receptor (Domains 1-3)
Length = 478
Score = 28.5 bits (62), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 19 AEDYVSSRYIKKLRSKLSQRILEAHANVKDLGLTEAKLSYIRAWQSLPDYGLTLF 73
AEDY S R+ KL +L A ++ LG L+ IR W+ +Y L +F
Sbjct: 37 AEDYRSYRF-PKLTVITEYLLLFRVAGLESLGDLFPNLTVIRGWKLFYNYALVIF 90
>pdb|3IZ3|B Chain B, Cryoem Structure Of Cytoplasmic Polyhedrosis Virus
pdb|3IZ3|C Chain C, Cryoem Structure Of Cytoplasmic Polyhedrosis Virus
pdb|3J17|B Chain B, Structure Of A Transcribing Cypovirus By Cryo-Electron
Microscopy
pdb|3J17|C Chain C, Structure Of A Transcribing Cypovirus By Cryo-Electron
Microscopy
Length = 1333
Score = 28.1 bits (61), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/60 (23%), Positives = 29/60 (48%), Gaps = 6/60 (10%)
Query: 49 LGLTEAKLSYIRAWQSLPDYGLTLFVIKPMGHKKEELLGVTPSRLMRMELSSGDHVRTWR 108
LGLTE +L Y+R +++ + L + H +L + LM +++ D ++ +
Sbjct: 327 LGLTETRLDYVRLVKTIVGHALNI------DHFAASVLNINLRALMEANVTADDRIKALQ 380
>pdb|3CNF|A Chain A, 3.88 Angstrom Structure Of Cytoplasmic Polyhedrosis Virus
By Cryo-Electron Microscopy
pdb|3CNF|B Chain B, 3.88 Angstrom Structure Of Cytoplasmic Polyhedrosis Virus
By Cryo-Electron Microscopy
pdb|3IZX|B Chain B, 3.1 Angstrom Cryoem Structure Of Cytoplasmic Polyhedrosis
Virus
pdb|3IZX|C Chain C, 3.1 Angstrom Cryoem Structure Of Cytoplasmic Polyhedrosis
Virus
Length = 1333
Score = 28.1 bits (61), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/60 (23%), Positives = 29/60 (48%), Gaps = 6/60 (10%)
Query: 49 LGLTEAKLSYIRAWQSLPDYGLTLFVIKPMGHKKEELLGVTPSRLMRMELSSGDHVRTWR 108
LGLTE +L Y+R +++ + L + H +L + LM +++ D ++ +
Sbjct: 327 LGLTETRLDYVRLVKTIVGHALNI------DHFAASVLNINLRALMEANVTADDRIKALQ 380
>pdb|3JV9|A Chain A, The Structure Of A Reduced Form Of Oxyr From N.
Meningitidis
pdb|3JV9|B Chain B, The Structure Of A Reduced Form Of Oxyr From N.
Meningitidis
Length = 219
Score = 27.7 bits (60), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 15/28 (53%)
Query: 66 PDYGLTLFVIKPMGHKKEELLGVTPSRL 93
P Y FVI P GH EEL V+P L
Sbjct: 72 PLYDEPFFVIVPKGHSFEELDAVSPRXL 99
>pdb|2PV4|A Chain A, Crystal Structure Of An Uncharacterized Protein From
Duf3069 Family (Sama_2622) From Shewanella Amazonensis
Sb2b At 1.95 A Resolution
Length = 145
Score = 27.3 bits (59), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 21 DYVSSRYIKKLRSKLSQRILEAHANVKDLGLTEAKLSYIRAWQSLPDYGLTLF 73
D V+ R I +L + +L A+ ++ D L + + RAW LPD +LF
Sbjct: 18 DKVAGRVIAL--DRLPESLLTAYRSLCDELLADRDGRFTRAWDQLPDSASSLF 68
>pdb|1ISN|A Chain A, Crystal Structure Of Merlin Ferm Domain
Length = 323
Score = 26.6 bits (57), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
Query: 36 SQRILEAHANVKDLGLTEAKLSYIRAWQSLPDYGLTLFVIKPMGHKK--EELLGV 88
+RI +A + EA++ Y++ Q L YG+ F I+ +KK E LLGV
Sbjct: 168 EERITAWYAEHRGRARDEAEMEYLKIAQDLEMYGVNYFTIR---NKKGTELLLGV 219
>pdb|1H4R|B Chain B, Crystal Structure Of The Ferm Domain Of Merlin, The
Neurofibromatosis 2 Tumor Suppressor Protein
Length = 314
Score = 26.6 bits (57), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
Query: 36 SQRILEAHANVKDLGLTEAKLSYIRAWQSLPDYGLTLFVIKPMGHKK--EELLGV 88
+RI +A + EA++ Y++ Q L YG+ F I+ +KK E LLGV
Sbjct: 186 EERITAWYAEHRGRARDEAEMEYLKIAQDLEMYGVNYFAIR---NKKGTELLLGV 237
>pdb|1H4R|A Chain A, Crystal Structure Of The Ferm Domain Of Merlin, The
Neurofibromatosis 2 Tumor Suppressor Protein
Length = 314
Score = 26.6 bits (57), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
Query: 36 SQRILEAHANVKDLGLTEAKLSYIRAWQSLPDYGLTLFVIKPMGHKK--EELLGV 88
+RI +A + EA++ Y++ Q L YG+ F I+ +KK E LLGV
Sbjct: 186 EERITAWYAEHRGRARDEAEMEYLKIAQDLEMYGVNYFAIR---NKKGTELLLGV 237
>pdb|3U8Z|A Chain A, Human Merlin Ferm Domain
pdb|3U8Z|B Chain B, Human Merlin Ferm Domain
pdb|3U8Z|C Chain C, Human Merlin Ferm Domain
pdb|3U8Z|D Chain D, Human Merlin Ferm Domain
Length = 300
Score = 26.6 bits (57), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
Query: 36 SQRILEAHANVKDLGLTEAKLSYIRAWQSLPDYGLTLFVIKPMGHKK--EELLGV 88
+RI +A + EA++ Y++ Q L YG+ F I+ +KK E LLGV
Sbjct: 173 EERITAWYAEHRGRARDEAEMEYLKIAQDLEMYGVNYFAIR---NKKGTELLLGV 224
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,562,820
Number of Sequences: 62578
Number of extensions: 210329
Number of successful extensions: 419
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 397
Number of HSP's gapped (non-prelim): 31
length of query: 178
length of database: 14,973,337
effective HSP length: 92
effective length of query: 86
effective length of database: 9,216,161
effective search space: 792589846
effective search space used: 792589846
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)