Query psy14197
Match_columns 178
No_of_seqs 112 out of 277
Neff 6.8
Searched_HMMs 46136
Date Fri Aug 16 21:54:42 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14197.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14197hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3727|consensus 100.0 2.4E-53 5.2E-58 377.1 11.3 178 1-178 481-663 (664)
2 KOG4261|consensus 100.0 6.4E-31 1.4E-35 240.5 3.3 147 15-166 256-407 (1003)
3 PF00373 FERM_M: FERM central 99.3 2.4E-12 5.2E-17 95.1 4.9 53 21-73 71-126 (126)
4 KOG3529|consensus 99.3 3.2E-12 6.9E-17 117.8 5.9 153 14-170 153-313 (596)
5 smart00295 B41 Band 4.1 homolo 99.1 1.5E-10 3.3E-15 91.9 5.0 59 15-73 146-207 (207)
6 cd00836 FERM_C FERM_C domain. 98.9 1.9E-08 4.1E-13 71.6 9.8 85 67-156 1-91 (92)
7 KOG3530|consensus 98.6 2.4E-07 5.2E-12 84.6 10.5 132 35-173 165-308 (616)
8 KOG0248|consensus 98.6 4.8E-08 1E-12 90.4 4.9 140 17-158 745-900 (936)
9 PF02174 IRS: PTB domain (IRS- 98.4 3.3E-06 7.2E-11 61.2 9.2 72 83-156 23-98 (100)
10 cd00824 PTBI IRS-like phosphot 98.2 1.8E-05 3.9E-10 58.0 9.0 76 83-160 22-101 (104)
11 cd01203 DOK_PTB Downstream of 98.1 5.6E-05 1.2E-09 55.2 10.0 75 82-158 21-99 (104)
12 KOG3552|consensus 98.0 8.8E-06 1.9E-10 77.8 5.6 154 15-168 338-514 (1298)
13 smart00310 PTBI Phosphotyrosin 97.9 7.8E-05 1.7E-09 54.1 8.4 71 83-155 21-95 (98)
14 KOG0792|consensus 97.9 3.6E-05 7.8E-10 74.5 7.9 121 35-159 185-313 (1144)
15 PF09380 FERM_C: FERM C-termin 97.6 0.00084 1.8E-08 47.1 9.2 78 81-160 4-86 (90)
16 cd01202 FRS2 Fibroblast growth 97.3 0.0027 5.8E-08 46.2 8.9 70 83-156 22-95 (102)
17 KOG4257|consensus 97.3 0.00067 1.4E-08 63.6 6.9 141 18-158 174-325 (974)
18 cd01216 Fe65 Fe65 Phosphotyros 97.0 0.0076 1.6E-07 45.3 8.8 78 81-159 39-121 (123)
19 PF00640 PID: Phosphotyrosine 96.8 0.011 2.3E-07 44.1 8.5 76 82-158 52-135 (140)
20 KOG3527|consensus 96.8 0.0015 3.3E-08 62.5 4.3 73 35-108 185-257 (975)
21 cd01268 Numb Numb Phosphotyros 96.7 0.043 9.2E-07 42.2 10.9 79 83-161 51-136 (138)
22 KOG4261|consensus 96.6 3.6E-05 7.8E-10 72.5 -7.3 143 14-161 271-418 (1003)
23 cd00934 PTB Phosphotyrosine-bi 96.6 0.018 3.9E-07 41.8 8.4 70 81-151 41-117 (123)
24 KOG4371|consensus 96.5 0.00076 1.7E-08 65.6 0.4 115 12-128 656-783 (1332)
25 cd01267 CED6_AIDA1b Phosphotyr 95.9 0.079 1.7E-06 39.9 8.8 72 82-153 45-124 (132)
26 cd01272 FE65_N Fe65 Phosphotyr 95.9 0.051 1.1E-06 41.4 7.3 80 79-159 50-136 (138)
27 cd01269 PLX Pollux (PLX) Phosp 95.4 0.12 2.7E-06 39.0 7.9 67 83-149 44-118 (129)
28 cd00435 ACBP Acyl CoA binding 95.4 0.022 4.8E-07 40.1 3.6 31 39-69 54-85 (85)
29 KOG3784|consensus 95.2 0.035 7.7E-07 49.2 5.0 118 40-157 232-360 (407)
30 PF08416 PTB: Phosphotyrosine- 95.1 0.11 2.4E-06 39.3 7.0 79 83-161 41-129 (131)
31 smart00462 PTB Phosphotyrosine 94.8 0.25 5.4E-06 36.5 8.2 76 82-158 44-126 (134)
32 cd01215 Dab Disabled (Dab) Pho 93.1 0.82 1.8E-05 35.2 8.1 74 82-155 53-131 (139)
33 cd01274 AIDA-1b AIDA-1b Phosph 92.9 1 2.2E-05 33.9 8.4 50 82-131 41-91 (127)
34 PF00887 ACBP: Acyl CoA bindin 92.4 0.13 2.9E-06 35.9 2.9 26 40-65 57-82 (87)
35 PTZ00458 acyl CoA binding prot 92.1 0.15 3.2E-06 36.4 2.7 29 40-68 57-86 (90)
36 cd01273 CED-6 CED-6 Phosphotyr 91.4 0.84 1.8E-05 34.9 6.5 70 82-151 55-131 (142)
37 KOG3535|consensus 90.8 0.48 1E-05 42.7 5.2 60 82-141 92-154 (557)
38 cd01208 X11 X11 Phosphotyrosin 89.4 2.3 4.9E-05 33.4 7.4 74 83-158 51-148 (156)
39 cd01210 EPS8 Epidermal growth 87.4 3.2 6.9E-05 31.5 6.8 71 83-153 43-123 (127)
40 PF06017 Myosin_TH1: Myosin ta 87.0 5.3 0.00012 32.0 8.5 73 79-152 63-143 (199)
41 cd01209 SHC SHC phosphotyrosin 85.1 3.2 7E-05 32.7 6.0 74 83-156 76-156 (160)
42 PF14470 bPH_3: Bacterial PH d 82.0 14 0.0003 25.3 9.1 66 80-147 20-89 (96)
43 PF10480 ICAP-1_inte_bdg: Beta 79.6 17 0.00036 29.6 8.3 92 54-152 87-187 (200)
44 cd01212 JIP JNK-interacting pr 79.2 17 0.00036 28.1 8.0 74 83-156 46-131 (148)
45 COG4281 ACB Acyl-CoA-binding p 77.3 2.3 5E-05 29.6 2.4 27 40-66 56-82 (87)
46 KOG0817|consensus 77.0 2.4 5.3E-05 32.7 2.8 37 40-76 59-96 (142)
47 cd01211 GAPCenA GAPCenA Phosph 75.9 19 0.00041 27.2 7.2 61 90-152 49-120 (125)
48 PF14317 YcxB: YcxB-like prote 69.7 22 0.00047 21.9 5.6 56 88-148 1-57 (62)
49 cd01270 DYC-1 DYC-1 (DYB-1 bin 66.9 54 0.0012 25.2 8.1 69 82-150 43-131 (140)
50 cd01271 Fe65_C Fe65 C-terminal 64.5 59 0.0013 24.5 8.2 72 83-155 41-118 (124)
51 KOG3537|consensus 52.9 1.1E+02 0.0023 28.3 8.6 73 84-156 75-154 (543)
52 PHA03225 DNA packaging protein 52.6 13 0.00028 28.1 2.4 54 15-68 9-78 (125)
53 PF15277 Sec3-PIP2_bind: Exocy 52.1 81 0.0018 22.2 6.4 53 102-157 34-89 (91)
54 PF03413 PepSY: Peptidase prop 50.6 15 0.00033 22.9 2.3 14 94-107 51-64 (64)
55 PF06173 DUF986: Protein of un 50.5 20 0.00043 27.9 3.2 45 107-152 103-148 (149)
56 PF08269 Cache_2: Cache domain 48.5 50 0.0011 22.7 4.8 49 41-101 25-75 (95)
57 PF03581 Herpes_UL33: Herpesvi 46.7 7.9 0.00017 26.7 0.4 19 50-68 17-35 (75)
58 cd00900 PH-like Pleckstrin hom 45.2 80 0.0017 20.1 8.4 64 82-146 20-90 (99)
59 KOG3531|consensus 42.1 26 0.00056 34.6 3.2 106 15-131 178-283 (1036)
60 PF03646 FlaG: FlaG protein; 41.1 28 0.0006 24.9 2.6 21 93-113 70-90 (107)
61 PF00780 CNH: CNH domain; Int 41.0 48 0.001 26.9 4.3 32 83-114 239-270 (275)
62 PF08774 VRR_NUC: VRR-NUC doma 40.9 1.2E+02 0.0026 21.0 6.1 50 49-102 1-72 (100)
63 KOG3557|consensus 37.3 41 0.00088 32.2 3.6 76 83-158 87-172 (721)
64 PF11523 DUF3223: Protein of u 36.0 1.4E+02 0.003 20.3 5.5 57 37-93 2-66 (76)
65 TIGR03075 PQQ_enz_alc_DH PQQ-d 35.4 69 0.0015 29.6 4.9 47 70-116 303-350 (527)
66 PF04053 Coatomer_WDAD: Coatom 32.7 63 0.0014 29.4 4.1 44 84-127 118-162 (443)
67 PF05096 Glu_cyclase_2: Glutam 31.9 39 0.00084 28.8 2.4 26 90-115 194-219 (264)
68 PF08378 NERD: Nuclease-relate 31.1 1.7E+02 0.0037 20.3 5.5 47 54-100 5-57 (115)
69 PHA03229 DNA packaging protein 30.7 18 0.00039 27.5 0.2 54 15-68 7-80 (132)
70 PF14328 DUF4385: Domain of un 30.5 32 0.00069 26.6 1.5 34 85-118 20-53 (145)
71 COG3823 Glutamine cyclotransfe 29.3 56 0.0012 27.4 2.9 27 90-116 195-221 (262)
72 PF08000 bPH_1: Bacterial PH d 28.8 2.5E+02 0.0054 21.0 6.5 70 84-153 42-123 (124)
73 PHA03236 DNA packaging protein 28.3 21 0.00046 27.0 0.2 53 16-68 7-74 (127)
74 PF08567 TFIIH_BTF_p62_N: TFII 27.3 1.9E+02 0.0042 19.7 4.9 49 81-129 11-63 (79)
75 COG4811 Predicted membrane pro 27.1 1.1E+02 0.0024 23.6 3.9 46 106-152 105-151 (152)
76 KOG0164|consensus 26.8 1.2E+02 0.0025 29.9 4.8 102 61-163 844-958 (1001)
77 PRK10941 hypothetical protein; 26.6 1E+02 0.0022 26.1 4.0 52 56-118 103-158 (269)
78 PRK02913 hypothetical protein; 26.3 98 0.0021 24.1 3.6 46 106-152 103-149 (150)
79 PF06115 DUF956: Domain of unk 24.9 2.4E+02 0.0052 21.1 5.3 65 89-154 30-99 (118)
80 PF01011 PQQ: PQQ enzyme repea 24.4 1.2E+02 0.0026 17.2 3.0 23 85-108 4-27 (38)
81 PF06241 DUF1012: Protein of u 24.1 1.7E+02 0.0037 23.8 4.7 49 58-106 79-140 (206)
82 KOG0162|consensus 22.8 48 0.001 32.5 1.5 56 110-177 159-217 (1106)
83 PRK07738 flagellar protein Fla 21.7 74 0.0016 23.7 2.0 23 92-114 78-100 (117)
84 TIGR02276 beta_rpt_yvtn 40-res 20.9 1.4E+02 0.003 16.6 2.8 20 90-109 13-32 (42)
85 PF12645 HTH_16: Helix-turn-he 20.8 1.6E+02 0.0034 19.4 3.3 36 140-175 10-54 (65)
86 PF09308 LuxQ-periplasm: LuxQ, 20.5 2.5E+02 0.0053 23.6 5.1 67 83-151 124-198 (238)
No 1
>KOG3727|consensus
Probab=100.00 E-value=2.4e-53 Score=377.08 Aligned_cols=178 Identities=61% Similarity=1.102 Sum_probs=171.8
Q ss_pred CCCCCCC-C--CCCCCcccccccccCChHHHHHhhhH-HHHHHHHHHhccCCCChhHHHHHHHHHHhcCCCCceeEEEEe
Q psy14197 1 MQKPAPT-P--AISPASLDICAEDYVSSRYIKKLRSK-LSQRILEAHANVKDLGLTEAKLSYIRAWQSLPDYGLTLFVIK 76 (178)
Q Consensus 1 ~q~~~~~-~--~~~~~~~~~~l~~~lP~~~ik~~~~k-~~~~I~~~h~~~~~ls~~eAK~~yLk~~~~lp~fG~tfF~Vk 76 (178)
||+++++ + +.+..|...++.+||.|++++++++| +.++|++||++++.||..|||++||++||+||.||+|+|.|+
T Consensus 481 MQ~~n~g~~q~~~~~~~~d~np~~~vSPr~~rk~ksKQ~~~RILEAHqNVaQlsl~EAKLrfIQAWQSLPeFGityfivR 560 (664)
T KOG3727|consen 481 MQRPNSGSRQAAPVKLPRDVNPECYVSPRYVRKLKSKQITQRILEAHQNVAQLSLTEAKLRFIQAWQSLPEFGITYFIVR 560 (664)
T ss_pred hcCCCCCCCcCCcccCcCCCCchhhcCHHHHHHHhhHHHHHHHHHHhhhHhhhhhHHHHHHHHHHHhhccccCcEEEEEE
Confidence 8999773 3 33456899999999999999999999 999999999999999999999999999999999999999999
Q ss_pred ecCCCCceEEEEcCCcEEEEeCCCCCeEEeeecccccccccccCCceEEEEecCC-CeEEEEecCCHHHHHHHHhhhhhH
Q psy14197 77 PMGHKKEELLGVTPSRLMRMELSSGDHVRTWRYDTVKAWNVNWEIKHMMLQLTDG-NFIFECQSADCKVVHEFIGGYIFL 155 (178)
Q Consensus 77 ~~g~~~p~lLGI~~~gv~~id~~tkeil~~~~~s~i~~w~~~~~~~~f~l~fg~~-~~~~~~~T~~~~~i~~Li~~Yi~l 155 (178)
++|.+|++||||+.+++++||..||+.++||+|+.|+.|+|||+.+.++|+|.++ ...|+|.+++|+.+||+|+||||+
T Consensus 561 FkGsrKeEllGVA~NRLirmDlatGd~iKTWRfsnMKqWNVNWeir~v~IeF~dev~iaFsc~SADCKVVHEfIGGYIFL 640 (664)
T KOG3727|consen 561 FKGSRKEELLGVAYNRLIRMDLATGDHIKTWRFSNMKQWNVNWEIRQVMIEFEDEVNIAFSCLSADCKVVHEFIGGYIFL 640 (664)
T ss_pred ecCcchHHHHhhhhhheeeeecccCCceeeeeecchhhhcccceeeEEEEEecccceEEEEeecccchhhhhhccceEEE
Confidence 9999999999999999999999999999999999999999999999999999999 599999999999999999999999
Q ss_pred hhhccccccccchhhhhhhcCCC
Q psy14197 156 SMRSKDANQTLNEDLFHKLTGGW 178 (178)
Q Consensus 156 ~~~~~~~~q~~~~~~f~~~~~~~ 178 (178)
+||+|+.||+|||||||||||||
T Consensus 641 StRsKd~netLDEeLFhKLTGGw 663 (664)
T KOG3727|consen 641 STRSKDQNETLDEELFHKLTGGW 663 (664)
T ss_pred EecchhccccccHHHHHhhccCC
Confidence 99999999999999999999999
No 2
>KOG4261|consensus
Probab=99.96 E-value=6.4e-31 Score=240.53 Aligned_cols=147 Identities=27% Similarity=0.523 Sum_probs=138.2
Q ss_pred ccccccccCChHHHHHhhhHHHHHHHHHHhccCCCChhHHHHHHHHHHhcCCCCceeEEEEeec--CCCC--ceEEEEcC
Q psy14197 15 LDICAEDYVSSRYIKKLRSKLSQRILEAHANVKDLGLTEAKLSYIRAWQSLPDYGLTLFVIKPM--GHKK--EELLGVTP 90 (178)
Q Consensus 15 ~~~~l~~~lP~~~ik~~~~k~~~~I~~~h~~~~~ls~~eAK~~yLk~~~~lp~fG~tfF~Vk~~--g~~~--p~lLGI~~ 90 (178)
++++++||+|+.++|.. -+++|+.+|+++.++|+++||+.|.++|+.|++||++||.||++ |+++ |++|||++
T Consensus 256 ~~ld~kd~lpk~y~k~k---~ekKif~~~k~~~~~sei~ak~~y~k~~r~l~tygvtff~VKek~~gknklVprlLgv~K 332 (1003)
T KOG4261|consen 256 GFLDLKDFLPKEYVKQK---GEKKIFQAHKNCGGMSEIDAKVKYVKLARSLKTYGVTFFLVKEKMKGKNKLVPRLLGVTK 332 (1003)
T ss_pred cchhccccChHHHhccc---cchhhhhhhhhhcchhHHHHHHHHHHHhccccccceEEEEehhhccCcccccchhhhhhH
Confidence 78899999999999944 48999999999999999999999999999999999999999985 6665 99999999
Q ss_pred CcEEEEeCCCCCeEEeeecccccccccccCCceEEEEecCC-CeEEEEecCCHHHHHHHHhhhhhHhhhcccccccc
Q psy14197 91 SRLMRMELSSGDHVRTWRYDTVKAWNVNWEIKHMMLQLTDG-NFIFECQSADCKVVHEFIGGYIFLSMRSKDANQTL 166 (178)
Q Consensus 91 ~gv~~id~~tkeil~~~~~s~i~~w~~~~~~~~f~l~fg~~-~~~~~~~T~~~~~i~~Li~~Yi~l~~~~~~~~q~~ 166 (178)
+.|+++|.+||++|..||+..+++|..++ +.|+++||++ ..+|+++|+++++|.+||.|||++|++++...+.+
T Consensus 333 ~svmr~de~tk~il~ewpl~~V~rw~~s~--~~ftldfgdyq~~yysvqtT~~e~i~Qli~gyidiilkkk~skdh~ 407 (1003)
T KOG4261|consen 333 ESVMRVDEKTKEILQEWPLTTVRRWAASP--KSFTLDFGDYQDGYYSVQTTEGEQIAQLIAGYIDIILKKKQTKDHF 407 (1003)
T ss_pred HhhhhcchhhhhHhhhcchhHHHHhccCc--ceeccccccccccccceeeccchHHHHHHHHHHHHHHhhhhhhhhc
Confidence 99999999999999999999999999999 9999999999 79999999999999999999999999988766543
No 3
>PF00373 FERM_M: FERM central domain; InterPro: IPR019748 The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 4DXA_B 2EMS_A 2ZPY_A 1J19_A 2D10_B 2D11_B 1GC6_A 2D2Q_A 2EMT_A 2YVC_A ....
Probab=99.31 E-value=2.4e-12 Score=95.12 Aligned_cols=53 Identities=40% Similarity=0.776 Sum_probs=49.2
Q ss_pred ccCC--hHHHHHhhhH-HHHHHHHHHhccCCCChhHHHHHHHHHHhcCCCCceeEE
Q psy14197 21 DYVS--SRYIKKLRSK-LSQRILEAHANVKDLGLTEAKLSYIRAWQSLPDYGLTLF 73 (178)
Q Consensus 21 ~~lP--~~~ik~~~~k-~~~~I~~~h~~~~~ls~~eAK~~yLk~~~~lp~fG~tfF 73 (178)
.|+| +..+...+.+ |+++|.++|+++.|+|..+||..||++|++||+||++||
T Consensus 71 ~~iP~~~~~~~~~~~~~~~~~I~~~~~~l~~~s~~~a~~~fl~~~~~~p~yG~~~F 126 (126)
T PF00373_consen 71 NFIPKAPKLIKKMKQKEWEKRILEQHKKLRGMSPEEAKLQFLQICQSLPTYGSTFF 126 (126)
T ss_dssp GTSSHHHHHHCCSTHHHHHHHHHHHHHHTTT--HHHHHHHHHHHHCTSTTTTEEEE
T ss_pred hhhhhhHHHHhhhhHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCCCCCceeC
Confidence 4999 9999988888 999999999999999999999999999999999999998
No 4
>KOG3529|consensus
Probab=99.29 E-value=3.2e-12 Score=117.76 Aligned_cols=153 Identities=20% Similarity=0.218 Sum_probs=128.6
Q ss_pred cccccccccCChHHHHHhhh-H--HHHHHHHHHhccCCCChhHHHHHHHHHHhcCCCCceeEEEEeecCCCCceEEEEcC
Q psy14197 14 SLDICAEDYVSSRYIKKLRS-K--LSQRILEAHANVKDLGLTEAKLSYIRAWQSLPDYGLTLFVIKPMGHKKEELLGVTP 90 (178)
Q Consensus 14 ~~~~~l~~~lP~~~ik~~~~-k--~~~~I~~~h~~~~~ls~~eAK~~yLk~~~~lp~fG~tfF~Vk~~g~~~p~lLGI~~ 90 (178)
.+++.....+|.+.+.++.. . |+.+|.++|..+.|++.++|.++|+++.+.+|+||+++|.++.+ ...+..|||+.
T Consensus 153 ~~~l~~~~~lP~~~~~q~~~s~~~~e~ri~~~~~~~~~~~re~a~leylki~qdle~ygvny~~i~~k-~gt~~~lgv~~ 231 (596)
T KOG3529|consen 153 VGRLAGDRLLPQRVLDQHKMTPDMWEDRIKEWYAEHRGMTREEAMLEYLKIAQDLEMYGVNYFEIKNK-KGTDLWLGVDA 231 (596)
T ss_pred hhccccCcccchhhhhhccccHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhccccccccceeecCCC-CCCcccccccc
Confidence 46777888999999998883 3 99999999999999999999999999999999999999999832 33488999999
Q ss_pred CcEEEEeCCCC-CeEEeeecccccccccccCCceEEEEecCC-C---eEEEEecCCHHHHHHHHhhhhhHhhhccccccc
Q psy14197 91 SRLMRMELSSG-DHVRTWRYDTVKAWNVNWEIKHMMLQLTDG-N---FIFECQSADCKVVHEFIGGYIFLSMRSKDANQT 165 (178)
Q Consensus 91 ~gv~~id~~tk-eil~~~~~s~i~~w~~~~~~~~f~l~fg~~-~---~~~~~~T~~~~~i~~Li~~Yi~l~~~~~~~~q~ 165 (178)
.|+..+|..++ ..-..+|+++|+|-..+. +.|++.-.+. . ..+...+...+.|.++|.+...++||+ +...+
T Consensus 232 ~gl~~y~~~~k~~P~~~f~w~eirnisf~~--kkf~~k~id~~~~~f~~~~~~~~~~~~~l~~~~~~~~l~~rr-~~~~t 308 (596)
T KOG3529|consen 232 LGLNIYDESDKLTPKIGFPWSEIRNISFND--KKFHIKPIDKKASDFSFYAPRLRINKRILDLCMGNHELYMRR-RKPDT 308 (596)
T ss_pred CCccccccccCCCCCCCCCccccCCCCCCc--ccccCCCCCcccCcccccccccccchhhhhhhhccchhhhhc-ccccc
Confidence 99999999887 556679999999966655 9999998888 2 444556678999999999999999995 45555
Q ss_pred cchhh
Q psy14197 166 LNEDL 170 (178)
Q Consensus 166 ~~~~~ 170 (178)
.+...
T Consensus 309 i~vqq 313 (596)
T KOG3529|consen 309 IEVQQ 313 (596)
T ss_pred cchhh
Confidence 55544
No 5
>smart00295 B41 Band 4.1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.
Probab=99.07 E-value=1.5e-10 Score=91.88 Aligned_cols=59 Identities=27% Similarity=0.522 Sum_probs=55.0
Q ss_pred ccccccccCChHHHHHh--hhH-HHHHHHHHHhccCCCChhHHHHHHHHHHhcCCCCceeEE
Q psy14197 15 LDICAEDYVSSRYIKKL--RSK-LSQRILEAHANVKDLGLTEAKLSYIRAWQSLPDYGLTLF 73 (178)
Q Consensus 15 ~~~~l~~~lP~~~ik~~--~~k-~~~~I~~~h~~~~~ls~~eAK~~yLk~~~~lp~fG~tfF 73 (178)
....++.|+|+.+++.. +.+ |+++|.++|+++.|+|+.+||..||++|++||+||++||
T Consensus 146 ~~~~~~~~lP~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~a~~~yl~~~~~lp~fG~~~f 207 (207)
T smart00295 146 KELSLKRFLPKQLLDSEKRTLKEWRERIVSLHKELIGLSPEEAKLKYLELAEKLPTYGVELF 207 (207)
T ss_pred cccccceeCChhhhhhccccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhccccccCcccC
Confidence 57789999999999876 456 999999999999999999999999999999999999997
No 6
>cd00836 FERM_C FERM_C domain. The FERM_C domain is the third structural domain within the FERM domain. The FERM domain is found in the cytoskeletal-associated proteins such as ezrin, moesin, radixin, 4.1R, and merlin. These proteins provide a link between the membrane and cytoskeleton and are involved in signal transduction pathways. The FERM_C domain is also found in protein tyrosine phosphatases (PTPs), the tyrosine kinases FAKand JAK, in addition to other proteins involved in signaling. This domain is structuraly similar to the PH and PTB domains and consequently is capable of binding to both peptides and phospholipids at different sites.
Probab=98.90 E-value=1.9e-08 Score=71.58 Aligned_cols=85 Identities=19% Similarity=0.330 Sum_probs=70.8
Q ss_pred CCceeEEEEeecCCCCceEEEEcCCcEEEEeCCCCCeEEeeecccccccccccCCceEEEEecCC---CeEEEEecC---
Q psy14197 67 DYGLTLFVIKPMGHKKEELLGVTPSRLMRMELSSGDHVRTWRYDTVKAWNVNWEIKHMMLQLTDG---NFIFECQSA--- 140 (178)
Q Consensus 67 ~fG~tfF~Vk~~g~~~p~lLGI~~~gv~~id~~tkeil~~~~~s~i~~w~~~~~~~~f~l~fg~~---~~~~~~~T~--- 140 (178)
+||+.+|.|+-+ ...|..|||++.||.+++..+ .+..+|+++|+++.... +.|+|.+.+. ...+.+.+.
T Consensus 1 ~YGv~~~~vkd~-~g~~~~lGV~~~Gi~v~~~~~--~~~~f~W~~I~~isf~~--k~F~i~~~~~~~~~~~~~f~~~s~~ 75 (92)
T cd00836 1 MYGVDLHPVKDK-KGTELLLGVTAEGILVYDDGT--PINEFPWPEIRKISFKR--KKFTLKVRDKDGQEITLSFQTPSHR 75 (92)
T ss_pred CCCeeeEEEECC-CCCeEEEEEeCCCcEEecCCC--EEEEEEcccceEEEEcC--CEEEEEEecCcCceeeEEEECCCHH
Confidence 699999999843 346899999999999999866 89999999999988877 9999999987 466666665
Q ss_pred CHHHHHHHHhhhhhHh
Q psy14197 141 DCKVVHEFIGGYIFLS 156 (178)
Q Consensus 141 ~~~~i~~Li~~Yi~l~ 156 (178)
.++.+-.+|.++...+
T Consensus 76 ~~k~lwk~~ve~H~Ff 91 (92)
T cd00836 76 ACKYLWKLCVEQHAFF 91 (92)
T ss_pred HHHHHHHHHHhhhhhc
Confidence 5777778888877654
No 7
>KOG3530|consensus
Probab=98.63 E-value=2.4e-07 Score=84.59 Aligned_cols=132 Identities=21% Similarity=0.382 Sum_probs=99.3
Q ss_pred HHHHHHHHHhccCCCChhHHHHHHHHHHhcCCCCceeEEEEeecCCC-CceEEEEcCCcEEEEeCCCCCeEEeeeccccc
Q psy14197 35 LSQRILEAHANVKDLGLTEAKLSYIRAWQSLPDYGLTLFVIKPMGHK-KEELLGVTPSRLMRMELSSGDHVRTWRYDTVK 113 (178)
Q Consensus 35 ~~~~I~~~h~~~~~ls~~eAK~~yLk~~~~lp~fG~tfF~Vk~~g~~-~p~lLGI~~~gv~~id~~tkeil~~~~~s~i~ 113 (178)
++.+|.+.|+.+.|+++.+|.+.||..++.|.+||+--+.|+ |+. .+-.||+++.||++++-+++- ..+-+..|.
T Consensus 165 LE~~I~e~hK~~rGqspaqAElnyLnkAkwLemYGVDmH~V~--g~dg~ey~LGLTptGIlvf~g~~ki--g~f~WpkI~ 240 (616)
T KOG3530|consen 165 LEERIFELHKELRGQSPAQAELNYLNKAKWLEMYGVDMHPVK--GHDGSEYYLGLTPTGILVFEGKKKI--GLFFWPKIT 240 (616)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHhhhhhhhhccccceeee--cCCCceeEeeccCceEEEEECCcee--eEEecchhe
Confidence 999999999999999999999999999999999999999999 444 477999999999999987764 457777888
Q ss_pred ccccccCCceEEEEecCC--C-----eEEEEecCCHHHHHHH----HhhhhhHhhhccccccccchhhhhh
Q psy14197 114 AWNVNWEIKHMMLQLTDG--N-----FIFECQSADCKVVHEF----IGGYIFLSMRSKDANQTLNEDLFHK 173 (178)
Q Consensus 114 ~w~~~~~~~~f~l~fg~~--~-----~~~~~~T~~~~~i~~L----i~~Yi~l~~~~~~~~q~~~~~~f~~ 173 (178)
. ++...+.|+|.+.+. + ..|.+.+.....+.-| +..-.+.-++.... .......|.+
T Consensus 241 K--vdFk~kk~~L~v~edd~~~~~q~hTf~F~~~~~~AcKhLWKCavEhhaFFRl~~p~~-~~s~~~~ffr 308 (616)
T KOG3530|consen 241 K--VDFKGKKFTLVVSEDDDQGREQEHTFVFRLPSPKACKHLWKCAVEHHAFFRLRCPVS-SQSARSDFFR 308 (616)
T ss_pred E--eeccCcEEEEEEeeccccCCcccceEEEeCCCcchhHHHHHHhhhccceEeccCCcc-ccccccchhh
Confidence 8 555559999988755 2 4777777555444433 34444555555443 3333344443
No 8
>KOG0248|consensus
Probab=98.59 E-value=4.8e-08 Score=90.42 Aligned_cols=140 Identities=16% Similarity=0.243 Sum_probs=105.3
Q ss_pred ccccccCChHHHHHhhhH-HHHHHHHHHhccCCCChhHHHHHHHHHHhcCCCCceeEEEEeec--CC-CC-ceEEEEcCC
Q psy14197 17 ICAEDYVSSRYIKKLRSK-LSQRILEAHANVKDLGLTEAKLSYIRAWQSLPDYGLTLFVIKPM--GH-KK-EELLGVTPS 91 (178)
Q Consensus 17 ~~l~~~lP~~~ik~~~~k-~~~~I~~~h~~~~~ls~~eAK~~yLk~~~~lp~fG~tfF~Vk~~--g~-~~-p~lLGI~~~ 91 (178)
+-++.|-|.+|..-...+ ++.+|..-+..+.|+|+-|.-..||.++++||.||...|..+-- .. .+ =..|+||.+
T Consensus 745 qv~~rFyP~ryrdga~~eqLR~~l~t~W~~L~G~S~~eCvRIYLTVARKWPFFGAKLF~A~P~~~SS~~~tfiWlAVnED 824 (936)
T KOG0248|consen 745 FISQRFYPSKMLDVACIKSLRLQINSNWSELIGMSENECVRIYLTVARKWPFFGAKLFEASPMRTSSERKTFIWLAVNED 824 (936)
T ss_pred HHHHHhChhhhhccCCHHHHHHHHhhhHHHHhCCChhHheeeeeeecccCcccchhhhhcCCCccccccceeEEEEEcCC
Confidence 345678899998877777 88999999999999999999999999999999999999998742 22 22 368999999
Q ss_pred cEEEEeCCCCCeEEeeecccccccccccCCceEEEEecCC---C------eEEEEec--CCHHHHHHHHhhhhhHhhh
Q psy14197 92 RLMRMELSSGDHVRTWRYDTVKAWNVNWEIKHMMLQLTDG---N------FIFECQS--ADCKVVHEFIGGYIFLSMR 158 (178)
Q Consensus 92 gv~~id~~tkeil~~~~~s~i~~w~~~~~~~~f~l~fg~~---~------~~~~~~T--~~~~~i~~Li~~Yi~l~~~ 158 (178)
||.++|-++-+++.+|||+.+....-=- +-|++.+.+- . .++.+.- ..-.++--+|++||+.-.+
T Consensus 825 GvSlLd~N~M~vi~tYpYsSl~TFGG~q--DDFMlVI~~tp~K~~~~~~~EKL~F~MAkPKI~E~Tl~~ASYiNHcqk 900 (936)
T KOG0248|consen 825 GVSLLDRNHMDVIRTYPYSSLSTFGGFQ--DDFMLVIIRTPGKHPDEAPKEKLTFSMAKPKIEELTLHLASYINHCQK 900 (936)
T ss_pred cceeccccceeEEEEeeccccccccCcc--cceEEEEecCCCCCCCccchhhhhhhhccchHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999998854333 3355555432 1 1222211 1223344568999986544
No 9
>PF02174 IRS: PTB domain (IRS-1 type); InterPro: IPR002404 Insulin receptor substrate-1 proteins contain both a pleckstrin homology domain IPR001849 from INTERPRO and a phosphotyrosine binding (PTB) domain. These domains facilitate interaction with the activated tyrosine-phosphorylated insulin receptor. The PTB domain is situated towards the N terminus. Two arginines in this domain are responsible for hydrogen bonding phosphotyrosine residues on a Ac-LYASSNPApY-NH2 peptide in the juxtamembrane region of the insulin receptor. Further interactions via `bridged' water molecules are coordinated by residues an Asn and a Ser residue []. The PTB domain has a compact, 7-stranded beta-sandwich structure, capped by a C-terminal helix. The substrate peptide fits into an L-shaped surface cleft formed from the C-terminal helix and strands 5 and 6 [].; GO: 0005158 insulin receptor binding; PDB: 1XR0_B 1QQG_B 1IRS_A 2V76_D 1MK7_B 2K00_A 1MIZ_B 1MK9_B 1MIX_A 2H7E_A ....
Probab=98.39 E-value=3.3e-06 Score=61.24 Aligned_cols=72 Identities=18% Similarity=0.272 Sum_probs=66.3
Q ss_pred ceEEEEcCCcEEEEeCCCCCeEEeeecccccccccccCCceEEEEecCC----CeEEEEecCCHHHHHHHHhhhhhHh
Q psy14197 83 EELLGVTPSRLMRMELSSGDHVRTWRYDTVKAWNVNWEIKHMMLQLTDG----NFIFECQSADCKVVHEFIGGYIFLS 156 (178)
Q Consensus 83 p~lLGI~~~gv~~id~~tkeil~~~~~s~i~~w~~~~~~~~f~l~fg~~----~~~~~~~T~~~~~i~~Li~~Yi~l~ 156 (178)
+.+|-|+.+.+.+.++.+++.+.+|||..|+++..+. +.|.++.|.. ...|.++|.+++.|.+.+..+|.-+
T Consensus 23 ~~~L~l~~~~l~L~~~~~~~~~~~Wpl~~lRryG~~~--~~F~fEaGRrc~tG~G~f~f~t~~a~~I~~~v~~~i~~~ 98 (100)
T PF02174_consen 23 PYLLCLTPDELILIDPQSGEPILEWPLRYLRRYGRDD--GIFSFEAGRRCPTGEGLFWFQTPDAEEIFETVERAIKAQ 98 (100)
T ss_dssp EEEEEEESSEEEEEETTTTEEEEEEEGGGEEEEEEET--TEEEEEESTTSTTCSEEEEEEESTHHHHHHHHHHHHHHH
T ss_pred EEEEEECCCEEEEecCCCCceEEEEEhHHhhhhccCC--CEEEEEECCcCCCCCcEEEEEeCCHHHHHHHHHHHHHHh
Confidence 6799999999999999999999999999999998866 8999999965 5889999999999999999998754
No 10
>cd00824 PTBI IRS-like phosphotyrosine-binding domain. IRS-like phosphotyrosine-binding domain (PTBi); This domain has a PH-like fold and is found in insulin receptor substrate molecules and in other eukaryotic signaling molecules such as FRS2 and Dok. IRS and Dok molecules have an N-terminal PH domain, which is followed by an IRS-like PTB domain. FRS2 just has an N-terminal PTBi domain. This PTBi domain is shorter than the PTB domain which is found in SHC, Numb and other proteins. The PTBi domain binds to phosphotyrosines which are in NPXpY motifs.
Probab=98.17 E-value=1.8e-05 Score=58.02 Aligned_cols=76 Identities=14% Similarity=0.192 Sum_probs=70.0
Q ss_pred ceEEEEcCCcEEEEeCCCCCeEEeeecccccccccccCCceEEEEecCC----CeEEEEecCCHHHHHHHHhhhhhHhhh
Q psy14197 83 EELLGVTPSRLMRMELSSGDHVRTWRYDTVKAWNVNWEIKHMMLQLTDG----NFIFECQSADCKVVHEFIGGYIFLSMR 158 (178)
Q Consensus 83 p~lLGI~~~gv~~id~~tkeil~~~~~s~i~~w~~~~~~~~f~l~fg~~----~~~~~~~T~~~~~i~~Li~~Yi~l~~~ 158 (178)
+..|-++.+.+.++|+.+...+.+|||..|+++..+. +.|.++-|.. ...|.++|.++++|.+.+..+|.-.++
T Consensus 22 ~y~L~lt~~~l~L~~~~~~~~~~~wpl~~lRRyG~~~--~~FsfEaGRrc~tG~G~f~f~t~~~~~I~~~v~~~i~~~~~ 99 (104)
T cd00824 22 SYRLCLTSKELTLVKLGSRVALVVWPLMFLRRYGYDS--NLFSFEAGRRCVTGEGIFTFQTDRAEEIFQNVHETILAAMK 99 (104)
T ss_pred eEEEEECCCEEEEEecCCCceEEEeehHHeeecccCC--CEEEEEccCcCCCCCCEEEEEcCCHHHHHHHHHHHHHHHHH
Confidence 6799999999999999999999999999999988887 8999999976 478999999999999999999998887
Q ss_pred cc
Q psy14197 159 SK 160 (178)
Q Consensus 159 ~~ 160 (178)
+.
T Consensus 100 ~~ 101 (104)
T cd00824 100 AL 101 (104)
T ss_pred hc
Confidence 64
No 11
>cd01203 DOK_PTB Downstream of tyrosine kinase (DOK) Phosphotyrosine-binding domain. Downstream of tyrosine kinase (DOK) Phosphotyrosine-binding domain. This domain has a PH-like fold and is similiar to the PTB domain that is found in insulin receptor substrate molecules The DOK family of eukaryotic signaling molecules have an N-terminal PH domain, followed by an IRS-like PTB domain. This PTBi domain is shorter than the PTB domain which is found in SHC, Numb and other proteins. The PTBi domain binds to phosphotyrosines which are in NPXpY motifs.
Probab=98.08 E-value=5.6e-05 Score=55.23 Aligned_cols=75 Identities=11% Similarity=0.197 Sum_probs=67.2
Q ss_pred CceEEEEcCCcEEEEeCCCCCeEEeeecccccccccccCCceEEEEecCC----CeEEEEecCCHHHHHHHHhhhhhHhh
Q psy14197 82 KEELLGVTPSRLMRMELSSGDHVRTWRYDTVKAWNVNWEIKHMMLQLTDG----NFIFECQSADCKVVHEFIGGYIFLSM 157 (178)
Q Consensus 82 ~p~lLGI~~~gv~~id~~tkeil~~~~~s~i~~w~~~~~~~~f~l~fg~~----~~~~~~~T~~~~~i~~Li~~Yi~l~~ 157 (178)
.+.+|-|.++.+.+.|+++++.+.+|||.-|+++..+. ..|.++-|.. ...|.+.|.++++|-+.+...|...-
T Consensus 21 G~y~L~v~~~~l~L~d~~~~~~l~~WP~~~LRryG~d~--~~FsFEAGRrC~tGeG~f~F~t~~~~~if~~v~~~i~~q~ 98 (104)
T cd01203 21 GSYMLRMGPTELQLKSEDLGATLYMWPYRFLRKYGRDK--GKFSFEAGRRCTSGEGVFTFDTTQGNEIFRAVEAAIKSQK 98 (104)
T ss_pred eeEEEEEcCCEEEEEcCCCCcEEEEeehHhhhhhcccC--CEEEEEecCcCCCCCcEEEEecCCHHHHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999998886 8899998866 47899999999999999999887654
Q ss_pred h
Q psy14197 158 R 158 (178)
Q Consensus 158 ~ 158 (178)
.
T Consensus 99 ~ 99 (104)
T cd01203 99 K 99 (104)
T ss_pred h
Confidence 3
No 12
>KOG3552|consensus
Probab=98.00 E-value=8.8e-06 Score=77.81 Aligned_cols=154 Identities=19% Similarity=0.227 Sum_probs=104.6
Q ss_pred ccccccccCChHHHHHhhhH-HHHHHHHHHhccC-------CCChhHHHHHHHHHHhcCCCCceeEEEEeec-CCCC-ce
Q psy14197 15 LDICAEDYVSSRYIKKLRSK-LSQRILEAHANVK-------DLGLTEAKLSYIRAWQSLPDYGLTLFVIKPM-GHKK-EE 84 (178)
Q Consensus 15 ~~~~l~~~lP~~~ik~~~~k-~~~~I~~~h~~~~-------~ls~~eAK~~yLk~~~~lp~fG~tfF~Vk~~-g~~~-p~ 84 (178)
...-|+.|||..+++.++.| +++.|....+... -++..+||+-||+++..||+||...|....+ +++. .+
T Consensus 338 kewGlE~Fvp~sll~~MK~K~ikkaiSh~lK~Nqnl~~p~kklt~lQaklhYL~ila~L~sYGgr~F~atl~~~~~~se~ 417 (1298)
T KOG3552|consen 338 KEWGLERFVPVSLLEGMKRKEIKKAISHFLKLNQNLGSPSKKLTQLQAKLHYLDILASLPSYGGRCFSATLREGDRESER 417 (1298)
T ss_pred hhhchhhcccHHHHhhhhHHHHHHHHHHHHHhhhccCChhHHHHHHHHHHHHHHHHhhhhhccchhhhhhhhhcccceeE
Confidence 34568999999999999999 9998875544322 2678999999999999999999999998875 4332 44
Q ss_pred EEEEcC-CcEE-EEeCCCCCeEEeeecccccccccccCCce---EEEEecCC-CeEEEEecCCHHHHHHHHhhhhhHh--
Q psy14197 85 LLGVTP-SRLM-RMELSSGDHVRTWRYDTVKAWNVNWEIKH---MMLQLTDG-NFIFECQSADCKVVHEFIGGYIFLS-- 156 (178)
Q Consensus 85 lLGI~~-~gv~-~id~~tkeil~~~~~s~i~~w~~~~~~~~---f~l~fg~~-~~~~~~~T~~~~~i~~Li~~Yi~l~-- 156 (178)
.|=|.+ -||. +++.++.-+--.-.|+++.+..++.++.. +.|-+-+. -..|..++.++...+=|++||--+.
T Consensus 418 ~LLVgpryGiSqVinak~nv~~~la~f~~~trVe~~~Ede~~~~V~i~mldvk~vtllmEs~da~~lacl~aGYYRLLvd 497 (1298)
T KOG3552|consen 418 VLLVGPRYGISQVINAKNNVPQPLAAFEDFTRVEVNREDEVTCSVSIFMLDVKAVTLLMESRDACELACLLAGYYRLLVD 497 (1298)
T ss_pred EEEeccccchhHhhhcccccchhHHHhhhcceeEeeccccceEEEEEEEeccceeEEEeeccccchhhHhhhhhhhhhhc
Confidence 332222 2222 33555553333345677777777775433 33444344 5788889999999999999996653
Q ss_pred -----hhccccccccch
Q psy14197 157 -----MRSKDANQTLNE 168 (178)
Q Consensus 157 -----~~~~~~~q~~~~ 168 (178)
.+-+..+|+.+.
T Consensus 498 ~v~sIf~~~~~k~~a~~ 514 (1298)
T KOG3552|consen 498 PVTSIFLWPGNKQQAHR 514 (1298)
T ss_pred chHHHhhcCCccccccc
Confidence 333445555543
No 13
>smart00310 PTBI Phosphotyrosine-binding domain (IRS1-like).
Probab=97.94 E-value=7.8e-05 Score=54.10 Aligned_cols=71 Identities=10% Similarity=0.130 Sum_probs=64.4
Q ss_pred ceEEEEcCCcEEEEeCCCCCeEEeeecccccccccccCCceEEEEecCC----CeEEEEecCCHHHHHHHHhhhhhH
Q psy14197 83 EELLGVTPSRLMRMELSSGDHVRTWRYDTVKAWNVNWEIKHMMLQLTDG----NFIFECQSADCKVVHEFIGGYIFL 155 (178)
Q Consensus 83 p~lLGI~~~gv~~id~~tkeil~~~~~s~i~~w~~~~~~~~f~l~fg~~----~~~~~~~T~~~~~i~~Li~~Yi~l 155 (178)
+..|-+.++.+.++|.+++..+.+|||..|+++..+. +.|.++-|.. ...|.++|..++.|.+.|.+.|.-
T Consensus 21 ~y~L~lt~~~L~L~~~~~~~~~~~wpl~~lRRyG~~~--~~FsfEaGRrc~tG~G~f~f~t~~a~~i~~~v~~a~~~ 95 (98)
T smart00310 21 SYRLRLTSETLVLWRLNPRVELVVWPLLSLRRYGRDK--NFFFFEAGRRCVSGPGEFTFQTVVAQEIFQLVLEAMQA 95 (98)
T ss_pred eEEEEECCcEEEEEecCCCccEEEeehhHeeeecCCC--CEEEEEccCcCCCCCCEEEEEcCcHHHHHHHHHHHHHH
Confidence 5799999999999999999999999999999988876 8999999976 478999999999999999888754
No 14
>KOG0792|consensus
Probab=97.90 E-value=3.6e-05 Score=74.53 Aligned_cols=121 Identities=15% Similarity=0.169 Sum_probs=92.1
Q ss_pred HHHHHHHHHhccCCCChhHHHHHHHHHHhcCCCCceeEEEEeecCCCCceEEEEcCCcEEEEeCCCCCeEEeeecccccc
Q psy14197 35 LSQRILEAHANVKDLGLTEAKLSYIRAWQSLPDYGLTLFVIKPMGHKKEELLGVTPSRLMRMELSSGDHVRTWRYDTVKA 114 (178)
Q Consensus 35 ~~~~I~~~h~~~~~ls~~eAK~~yLk~~~~lp~fG~tfF~Vk~~g~~~p~lLGI~~~gv~~id~~tkeil~~~~~s~i~~ 114 (178)
.+++|.+.|+.+.|+++.||...||++|++|..||..||.++- ..+.++.|||...||.+..- .+.....||+.+|..
T Consensus 185 ~~~kVa~lhQ~h~G~~~~eAE~~yi~~~~rlegyG~e~~~akD-~~g~~i~lGi~~~Gi~V~~~-~g~~~~~~~W~di~~ 262 (1144)
T KOG0792|consen 185 FEQKVAELHQQHRGLLPAEAETNYINEAKRLEGYGEEFHRAKD-LHGNDINLGIARVGILVPGQ-NGRQSVKFPWGDIIK 262 (1144)
T ss_pred HHHHHHHHHHHhcccCccHHHHHHHHHHHhhccccceeccccc-CCCcceeeeeeeceeEeecc-Cccccceechhhhhh
Confidence 7889999999999999999999999999999999999999883 24568999999999987764 666777899999999
Q ss_pred cccccCCceEEEEecCC--Ce---EEEEec---CCHHHHHHHHhhhhhHhhhc
Q psy14197 115 WNVNWEIKHMMLQLTDG--NF---IFECQS---ADCKVVHEFIGGYIFLSMRS 159 (178)
Q Consensus 115 w~~~~~~~~f~l~fg~~--~~---~~~~~T---~~~~~i~~Li~~Yi~l~~~~ 159 (178)
...+. ..|-|...+. .. ...+.+ .-++-+-.+|..=...+..+
T Consensus 263 is~~k--s~~~le~~~~~~~~r~t~~~F~~~~~~~ak~lwk~cv~~H~Ffr~~ 313 (1144)
T KOG0792|consen 263 ISFKK--STFGLEQRNKDSESRETLLGFNMLDARTAKYLWKLCVEHHKFFRLK 313 (1144)
T ss_pred hhcch--hhhhhhhhhccccchhhhheeeecccchhHHHHHHHHHHhhHhhcc
Confidence 66666 6677766655 21 112233 33555556665555444444
No 15
>PF09380 FERM_C: FERM C-terminal PH-like domain; InterPro: IPR018980 The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain []. This entry, however, represents the PH-like domain found at the C terminus of the eukaryote proteins moesin, ezrin and radixin.; PDB: 1NI2_B 3U8Z_B 1H4R_B 1ISN_A 3QIJ_B 1GG3_A 2HE7_A 3BIN_A 2I1J_A 2I1K_A ....
Probab=97.60 E-value=0.00084 Score=47.14 Aligned_cols=78 Identities=9% Similarity=0.121 Sum_probs=58.8
Q ss_pred CCceEEEEcCCcEEEEeCCCCCeEEeeecccccccccccCCceEEEEecC-C-CeEEEEecCC---HHHHHHHHhhhhhH
Q psy14197 81 KKEELLGVTPSRLMRMELSSGDHVRTWRYDTVKAWNVNWEIKHMMLQLTD-G-NFIFECQSAD---CKVVHEFIGGYIFL 155 (178)
Q Consensus 81 ~~p~lLGI~~~gv~~id~~tkeil~~~~~s~i~~w~~~~~~~~f~l~fg~-~-~~~~~~~T~~---~~~i~~Li~~Yi~l 155 (178)
+.|.+|||++.||.+++...+..+..+++++|.+..... +.|+|...+ . ...+.+.+.. ++-+-.++..+...
T Consensus 4 ~~~~~LGv~~~GI~i~~~~~~~~~~~f~W~~I~~l~~~~--k~F~I~~~~~~~~~~~~f~~~~~~~aK~lw~~cv~~H~F 81 (90)
T PF09380_consen 4 GSPLWLGVSPRGISIYRDNNRISTQFFPWSEISKLSFKK--KKFTIEVRDESKEIKLKFYTPSPKAAKYLWKLCVEQHTF 81 (90)
T ss_dssp SBEEEEEEESSEEEEEETTBSSSSEEEEGGGEEEEEEET--TEEEEEESSTSSSEEEEEE-SSHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEcCCEeEEEeCCCcccceeeehhheeEEEecc--cEEEEEEeecccceEEEEEECCHHHHHHHHHHHHHHHHH
Confidence 458899999999999988776547899999999976666 999999976 3 4455556554 55566777777777
Q ss_pred hhhcc
Q psy14197 156 SMRSK 160 (178)
Q Consensus 156 ~~~~~ 160 (178)
++..+
T Consensus 82 f~~~~ 86 (90)
T PF09380_consen 82 FRLRR 86 (90)
T ss_dssp HHHHT
T ss_pred hcccC
Confidence 66654
No 16
>cd01202 FRS2 Fibroblast growth factor receptor substrate 2 (FRS2/SNT1) Phosphotyrosine-binding domain. Fibroblast growth factor receptor substrate 2 (FRS2/SNT1) Phosphotyrosine-binding domain (IRS1-like). FRS2 mediates signaling downstream of the FGF receptor. It has an N-terminal PTBi domain, which has a PH-like fold and is similiar to the PTB domain that is found in insulin receptor substrate molecules. This PTBi domain is shorter than the PTB domain which is found in SHC, Numb and other proteins. The PTBi domain binds to phosphotyrosines which are in NPXpY motifs.
Probab=97.32 E-value=0.0027 Score=46.19 Aligned_cols=70 Identities=13% Similarity=0.167 Sum_probs=60.8
Q ss_pred ceEEEEcCCcEEEEeCCCCCeEEeeecccccccccccCCceEEEEecCC----CeEEEEecCCHHHHHHHHhhhhhHh
Q psy14197 83 EELLGVTPSRLMRMELSSGDHVRTWRYDTVKAWNVNWEIKHMMLQLTDG----NFIFECQSADCKVVHEFIGGYIFLS 156 (178)
Q Consensus 83 p~lLGI~~~gv~~id~~tkeil~~~~~s~i~~w~~~~~~~~f~l~fg~~----~~~~~~~T~~~~~i~~Li~~Yi~l~ 156 (178)
..+|-|...-+++.+++.+ ..+|||..|+++..+. ..|.++-|.- ...|.++|.++++|-+.+..||.-.
T Consensus 22 ~g~L~vt~~~L~l~~~~~~--~~~WPl~~LRRYG~d~--~~FsFEAGRRC~tGeG~f~F~t~~~~~if~~v~~~I~~~ 95 (102)
T cd01202 22 SGWLELTRTELTLYISGKE--PVVWPLLCLRRYGYNS--DLFSFESGRRCQTGEGIFAFRCKRAEELFNLLQSYIQEN 95 (102)
T ss_pred eEEEEecceEEEEEcCCCC--EEEccHHHhHhhccCC--CEEEEEccCcCCCCCCEEEEEcCCHHHHHHHHHHHHHcC
Confidence 5799999999999997665 4799999999988887 8899988865 4789999999999999999998643
No 17
>KOG4257|consensus
Probab=97.29 E-value=0.00067 Score=63.64 Aligned_cols=141 Identities=16% Similarity=0.223 Sum_probs=105.5
Q ss_pred cccccCChHHHHHhhhH-HHHHHHHHHhccCCCChhHHHHHHHHHHhcCCCCceeEEEEeec-CCCCceEEEEcCC-cEE
Q psy14197 18 CAEDYVSSRYIKKLRSK-LSQRILEAHANVKDLGLTEAKLSYIRAWQSLPDYGLTLFVIKPM-GHKKEELLGVTPS-RLM 94 (178)
Q Consensus 18 ~l~~~lP~~~ik~~~~k-~~~~I~~~h~~~~~ls~~eAK~~yLk~~~~lp~fG~tfF~Vk~~-g~~~p~lLGI~~~-gv~ 94 (178)
-++.|+|+.++...+++ .+|.|.+.++++++++++|.-++|..+..-.-.|....|.|..- |=+.+..|.|.+. ||.
T Consensus 174 glksffPksl~~~~Kpk~lkKliqq~fkkfan~n~eE~i~rff~lL~~v~~~d~E~fk~~L~s~WnisveLvvGPh~Gis 253 (974)
T KOG4257|consen 174 GLKSFFPKSLHNPFKPKHLKKLIQQTFKKFANLNPEESIIRFFALLLEVYKFDVELFKCSLGSGWNISVELVVGPHTGIS 253 (974)
T ss_pred hHHhhChHhhhcccChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhHHheeeecccccceeEEEEecCcccce
Confidence 57889999999999999 99999999999999999999999999999888888888888863 4456778888887 877
Q ss_pred EEeCCCCCeEEeeecccccccc-ccc--CCceEEEEecCC----CeEEEEec-CCHHHHHHHHhhhhhHhhh
Q psy14197 95 RMELSSGDHVRTWRYDTVKAWN-VNW--EIKHMMLQLTDG----NFIFECQS-ADCKVVHEFIGGYIFLSMR 158 (178)
Q Consensus 95 ~id~~tkeil~~~~~s~i~~w~-~~~--~~~~f~l~fg~~----~~~~~~~T-~~~~~i~~Li~~Yi~l~~~ 158 (178)
-.--+.-+.-.--.|.+|.+.. ... +...-.+.++-. .....|.+ +.++-|++||.||.-+...
T Consensus 254 y~t~~~~~~t~laefkqi~sI~~c~~~eek~k~~lQlkisga~e~l~It~ssl~~aesmAdLiDGYcrL~n~ 325 (974)
T KOG4257|consen 254 YLTNERCDPTRLAEFKQIASITICKMEEEKEKTLLQLKISGAPEPLLITLSSLELAESMADLIDGYCRLYNQ 325 (974)
T ss_pred eccCCCCChHHHHhhhhhheeEEeecccccccceeeeeccCCCCCeEEecChhhHHHHHHHHHHHHHHHHcC
Confidence 6654444555555677777765 221 222344444433 23344444 5789999999999988654
No 18
>cd01216 Fe65 Fe65 Phosphotyrosine-binding (PTB) domain, phosphotyrosine-interaction (PI) domain. Fe65 Phosphotyrosine-binding (PTB) domain, phosphotyrosine-interaction (PI) domain. Fe65 is an amyloid beta A4 precursor (APP) protein-binding. It contains an N-terminal WW domain followed by two PTB domains. The C-terminal PTB domain is responsible for APP binding. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=96.98 E-value=0.0076 Score=45.34 Aligned_cols=78 Identities=13% Similarity=0.287 Sum_probs=62.9
Q ss_pred CCceEEEEcCCcEEEEeCCCCCeEEeeecccccccccccCCceEEEEecCCC-----eEEEEecCCHHHHHHHHhhhhhH
Q psy14197 81 KKEELLGVTPSRLMRMELSSGDHVRTWRYDTVKAWNVNWEIKHMMLQLTDGN-----FIFECQSADCKVVHEFIGGYIFL 155 (178)
Q Consensus 81 ~~p~lLGI~~~gv~~id~~tkeil~~~~~s~i~~w~~~~~~~~f~l~fg~~~-----~~~~~~T~~~~~i~~Li~~Yi~l 155 (178)
.++..|-|+.++|.++||+|++++..+|+..|.=|.++.+.+.|-.-..+.. ..|.|++ .++.|..-|+.-..+
T Consensus 39 ~~~v~l~Vs~~~l~l~d~~t~~~l~~~~i~~Isf~~~gk~~r~FafI~~~~~~~~~CHVF~c~~-~a~~i~~tv~~ac~l 117 (123)
T cd01216 39 WKDLNMDLAPSTLSLIDPDNLTVLHECRVRYLSFWGVGRDVRDFAFIMRTERRRFMCHVFRCEP-NAGALATTVEAACKL 117 (123)
T ss_pred CeEEEEEEecCcEEEEcCCCCeEEEEEEeeEEEEEEcCCCCcEEEEEEEcCCCeEEEEEEEcCC-CHHHHHHHHHHHHHH
Confidence 3478999999999999999999999999999999999986666655544442 4455544 888999888888888
Q ss_pred hhhc
Q psy14197 156 SMRS 159 (178)
Q Consensus 156 ~~~~ 159 (178)
.+++
T Consensus 118 ~y~k 121 (123)
T cd01216 118 RYQK 121 (123)
T ss_pred Hhhc
Confidence 7765
No 19
>PF00640 PID: Phosphotyrosine interaction domain (PTB/PID) A page on PI domains.; InterPro: IPR006020 The PI domain has a similar structure to the insulin receptor substrate-1 PTB domain, a 7-stranded beta-sandwich, capped by a C-terminal helix. However, the PI domain contains an additional short N-terminal helix and a large insertion between strands 1 and 2, which forms a helix and 2 long connecting loops. The substrate peptide fits into a surface cleft formed from the C-terminal helix and strand 5 [].; GO: 0005515 protein binding; PDB: 1WGU_A 2YT0_A 2YT1_A 2YSZ_A 2ROZ_B 3SO6_A 2DYQ_A 1AQC_A 1X11_B 1WJ1_A ....
Probab=96.80 E-value=0.011 Score=44.07 Aligned_cols=76 Identities=13% Similarity=0.262 Sum_probs=58.4
Q ss_pred CceEEEEcCCcEEEEeCCCCCeEEeeeccccccccc-ccC-CceEEEEecCC------CeEEEEecCCHHHHHHHHhhhh
Q psy14197 82 KEELLGVTPSRLMRMELSSGDHVRTWRYDTVKAWNV-NWE-IKHMMLQLTDG------NFIFECQSADCKVVHEFIGGYI 153 (178)
Q Consensus 82 ~p~lLGI~~~gv~~id~~tkeil~~~~~s~i~~w~~-~~~-~~~f~l~fg~~------~~~~~~~T~~~~~i~~Li~~Yi 153 (178)
.+..|.|+.+||.++|++|++++..+|+..|.-|.. +.+ .+.|-+-..+. -..|.|.+ .+.+|...|+.=.
T Consensus 52 ~~V~l~vs~~gI~v~~~~t~~~l~~~~i~~Is~~~~~d~~~~~~Fafi~~~~~~~~~~CHVF~~~~-~A~~i~~~i~~aF 130 (140)
T PF00640_consen 52 QKVTLNVSSDGIKVIDPDTGEVLMSHPIRRISFCAVGDPDDKRVFAFIARDPRSSRFYCHVFKCED-QAQEICQAIGQAF 130 (140)
T ss_dssp EEEEEEEETTEEEEEETTTTCEEEEEEGGGEEEEEESSTTETTEEEEEEEETSSSCEEEEEEEESS-CHHHHHHHHHHHH
T ss_pred eEEEEEEcCCeEEEecCccccccccCCccceEEEEecCCCcceEEEEEeccCCCCccccEeeeHhh-HHHHHHHHHHHHH
Confidence 468999999999999999999999999999999999 543 34555532322 25666676 8888888887666
Q ss_pred hHhhh
Q psy14197 154 FLSMR 158 (178)
Q Consensus 154 ~l~~~ 158 (178)
.+...
T Consensus 131 ~~a~~ 135 (140)
T PF00640_consen 131 ELAYQ 135 (140)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65554
No 20
>KOG3527|consensus
Probab=96.77 E-value=0.0015 Score=62.54 Aligned_cols=73 Identities=22% Similarity=0.363 Sum_probs=59.9
Q ss_pred HHHHHHHHHhccCCCChhHHHHHHHHHHhcCCCCceeEEEEeecCCCCceEEEEcCCcEEEEeCCCCCeEEeee
Q psy14197 35 LSQRILEAHANVKDLGLTEAKLSYIRAWQSLPDYGLTLFVIKPMGHKKEELLGVTPSRLMRMELSSGDHVRTWR 108 (178)
Q Consensus 35 ~~~~I~~~h~~~~~ls~~eAK~~yLk~~~~lp~fG~tfF~Vk~~g~~~p~lLGI~~~gv~~id~~tkeil~~~~ 108 (178)
++..+.+.|+.++||++.||.+.||.-+.+|-+||+-....|- ...-+++||||+.|+.++-++-..--..||
T Consensus 185 ledkv~eLhkt~rg~~pa~A~ih~lenakkl~mYgvDlh~aKd-segvdi~lgvca~glliy~d~lrinrfawP 257 (975)
T KOG3527|consen 185 LEDKVMELHKTHRGMTPAEAEIHFLENAKKLSMYGVDLHHAKD-SEGVDIMLGVCASGLLIYRDRLRINRFAWP 257 (975)
T ss_pred HHHHHHHHHhhhcCCChhHhHHHHHHhhhhhhhcccccccccc-cccceeeecccccceEEeechhhhccccCc
Confidence 8888999999999999999999999999999999999877652 223478999999999999775443333344
No 21
>cd01268 Numb Numb Phosphotyrosine-binding (PTB) domain. Numb Phosphotyrosine-binding (PTB) domain. Numb is a membrane associated adaptor protein, which is a determinant of asymmetric cell division. Numb has an N-terminal PTB domain. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=96.66 E-value=0.043 Score=42.19 Aligned_cols=79 Identities=11% Similarity=0.097 Sum_probs=57.9
Q ss_pred ceEEEEcCCcEEEEeCCCCCeEEeeecccccccccccCC-ceEEEEecCC-C-----eEEEEecCCHHHHHHHHhhhhhH
Q psy14197 83 EELLGVTPSRLMRMELSSGDHVRTWRYDTVKAWNVNWEI-KHMMLQLTDG-N-----FIFECQSADCKVVHEFIGGYIFL 155 (178)
Q Consensus 83 p~lLGI~~~gv~~id~~tkeil~~~~~s~i~~w~~~~~~-~~f~l~fg~~-~-----~~~~~~T~~~~~i~~Li~~Yi~l 155 (178)
-.+|-|+.+||.++|++||+++..+|+..|.=|+.+..+ +.|-.--.+. . ..|.+.-..++.|..-|+-=...
T Consensus 51 kv~L~VS~~Gi~vvd~~Tk~~i~~~~i~~ISfca~D~~d~r~FayIakd~~~~r~~CHvF~~~k~sa~~i~~avG~AF~~ 130 (138)
T cd01268 51 KAVLWVSGDGLRVVDEKTKGLIVDQTIEKVSFCAPDRNFDRGFSYICRDGTTRRWMCHGFLAVKDTGERLSHAVGCAFAA 130 (138)
T ss_pred EEEEEEecCcEEEEecCCCcEEEEEeEEEEEEEecCCCCCcEEEEEecCCCcccEEEEEEEeeccchhHHHHHHHHHHHH
Confidence 368999999999999999999999999999999998844 4444444444 2 23444322378888888777666
Q ss_pred hhhccc
Q psy14197 156 SMRSKD 161 (178)
Q Consensus 156 ~~~~~~ 161 (178)
-+.+|+
T Consensus 131 c~~~~~ 136 (138)
T cd01268 131 CLERKQ 136 (138)
T ss_pred HHHHhh
Confidence 666544
No 22
>KOG4261|consensus
Probab=96.65 E-value=3.6e-05 Score=72.54 Aligned_cols=143 Identities=3% Similarity=-0.287 Sum_probs=123.7
Q ss_pred cccccccccCChHHHHHhhhHHHHHHHHHHhccCCCChhHHHHHHHHHHhcCCCCceeEEEEeecCC--CC--ceEEEEc
Q psy14197 14 SLDICAEDYVSSRYIKKLRSKLSQRILEAHANVKDLGLTEAKLSYIRAWQSLPDYGLTLFVIKPMGH--KK--EELLGVT 89 (178)
Q Consensus 14 ~~~~~l~~~lP~~~ik~~~~k~~~~I~~~h~~~~~ls~~eAK~~yLk~~~~lp~fG~tfF~Vk~~g~--~~--p~lLGI~ 89 (178)
+.. +.+.|.|...++.++ -.+.+.++|+...+|+.-++++.|+|.-+...+||+.||.+..+.+ +. |...+|-
T Consensus 271 ~k~-ekKif~~~k~~~~~s--ei~ak~~y~k~~r~l~tygvtff~VKek~~gknklVprlLgv~K~svmr~de~tk~il~ 347 (1003)
T KOG4261|consen 271 QKG-EKKIFQAHKNCGGMS--EIDAKVKYVKLARSLKTYGVTFFLVKEKMKGKNKLVPRLLGVTKESVMRVDEKTKEILQ 347 (1003)
T ss_pred ccc-chhhhhhhhhhcchh--HHHHHHHHHHHhccccccceEEEEehhhccCcccccchhhhhhHHhhhhcchhhhhHhh
Confidence 344 888899999888655 5667889999999999999999999999999999999999987643 32 6789999
Q ss_pred CCcEEEEeCCCCCeEEeeecccccccccccCCceEEEEecCC-CeEEEEecCCHHHHHHHHhhhhhHhhhccc
Q psy14197 90 PSRLMRMELSSGDHVRTWRYDTVKAWNVNWEIKHMMLQLTDG-NFIFECQSADCKVVHEFIGGYIFLSMRSKD 161 (178)
Q Consensus 90 ~~gv~~id~~tkeil~~~~~s~i~~w~~~~~~~~f~l~fg~~-~~~~~~~T~~~~~i~~Li~~Yi~l~~~~~~ 161 (178)
..-++.++..++++..-|+.--..+|.+.+ ..+|..++-. -+.+.+++..++++...+.||+....+++.
T Consensus 348 ewpl~~V~rw~~s~~~ftldfgdyq~~yys--vqtT~~e~i~Qli~gyidiilkkk~skdh~G~egde~stm~ 418 (1003)
T KOG4261|consen 348 EWPLTTVRRWAASPKSFTLDFGDYQDGYYS--VQTTEGEQIAQLIAGYIDIILKKKQTKDHFGIEGDEGSTML 418 (1003)
T ss_pred hcchhHHHHhccCcceeccccccccccccc--eeeccchHHHHHHHHHHHHHHhhhhhhhhcccccchhhhhh
Confidence 999999999999999999999999999988 7788877766 366677999999999999999998887653
No 23
>cd00934 PTB Phosphotyrosine-binding (PTB) domain. Phosphotyrosine-binding (PTB) domain; PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. The PTB domain of SHC binds to a NPXpY sequence. More recent studies have found that some types of PTB domains such as the neuronal protein X11 and in the cell-fate determinant protein Numb can bind to peptides which are not tyrosine phosphorylated; whereas, other PTB domains can bind motifs lacking tyrosine residues altogether.
Probab=96.63 E-value=0.018 Score=41.83 Aligned_cols=70 Identities=7% Similarity=0.220 Sum_probs=53.8
Q ss_pred CCceEEEEcCCcEEEEeCCCCCeEEeeeccccccccccc-CCceEEEEecCC------CeEEEEecCCHHHHHHHHhh
Q psy14197 81 KKEELLGVTPSRLMRMELSSGDHVRTWRYDTVKAWNVNW-EIKHMMLQLTDG------NFIFECQSADCKVVHEFIGG 151 (178)
Q Consensus 81 ~~p~lLGI~~~gv~~id~~tkeil~~~~~s~i~~w~~~~-~~~~f~l~fg~~------~~~~~~~T~~~~~i~~Li~~ 151 (178)
..+..|-|+.+||.++|+++++++..+|+..|.-+.++. +.+.|-+-..+. -..|.|++. ++.|...|+.
T Consensus 41 ~~~v~l~vs~~gv~l~d~~~~~~l~~~~l~~Is~~~~~~~~~~~F~~i~~~~~~~~~~CHvF~c~~~-a~~i~~~l~~ 117 (123)
T cd00934 41 GQKVILSVSSDGVKLIDPKTKEVLASHPIRRISFCAADPDDLRIFAFIAREPGSSRFECHVFKCEKV-AEPIALTLGQ 117 (123)
T ss_pred CCEEEEEEEcCcEEEEeCCCCcEEEeeccceEEEEECCCCCCcEEEEEEEcCCCCcEEEEEEEeCch-HHHHHHHHHH
Confidence 347899999999999999999999999999999999887 456676666554 144555555 5666655543
No 24
>KOG4371|consensus
Probab=96.49 E-value=0.00076 Score=65.57 Aligned_cols=115 Identities=14% Similarity=0.176 Sum_probs=91.9
Q ss_pred CCcccccccccCChHHHHHhhhH-HHHHHHHHHhccCCCChhHHHHHHHHHHhcCCCCceeEEEEeecC----C------
Q psy14197 12 PASLDICAEDYVSSRYIKKLRSK-LSQRILEAHANVKDLGLTEAKLSYIRAWQSLPDYGLTLFVIKPMG----H------ 80 (178)
Q Consensus 12 ~~~~~~~l~~~lP~~~ik~~~~k-~~~~I~~~h~~~~~ls~~eAK~~yLk~~~~lp~fG~tfF~Vk~~g----~------ 80 (178)
.-..++++.+|+|.-+....... +.+++-..|....+.+..+|++.||++++..|.|+++|..|--.+ +
T Consensus 656 ~~gdysdP~hY~ps~yss~e~q~li~~~~p~~Hg~~~~t~aseah~kYV~~p~r~pd~e~h~qp~f~~kP~sar~~kt~~ 735 (1332)
T KOG4371|consen 656 VIGDYSDPQHYLPSKYSSFEDQSLIKNILPELHGHYAGTRASEAHHKYVQIPQRHPDFEAHVQPVFRTKPTSARPFKTDT 735 (1332)
T ss_pred cccccCChhhhcccceecccchhhhhhccccccCchhhcchhhccCcceecccCCCCccceeccccCCCCcccCcCcCCC
Confidence 33568999999999988866655 666666777777899999999999999999999999999886533 1
Q ss_pred CCceEEEEcCCcEEEEeCCC--CCeEEeeecccccccccccCCceEEEEe
Q psy14197 81 KKEELLGVTPSRLMRMELSS--GDHVRTWRYDTVKAWNVNWEIKHMMLQL 128 (178)
Q Consensus 81 ~~p~lLGI~~~gv~~id~~t--keil~~~~~s~i~~w~~~~~~~~f~l~f 128 (178)
..|.++|+...||..+.++. ++++..+|...+..-.... +.|.|.-
T Consensus 736 ~~pp~~gp~prgIsi~~p~~~a~~~~a~fPpa~v~~lqFd~--k~f~Is~ 783 (1332)
T KOG4371|consen 736 GSPPWIGPMPRGISIYEPQGGAREVIAEFPPAQVQTLQFDK--KRFVISA 783 (1332)
T ss_pred CCCccccccccceeccccCCCCccccCCCCCCCCCceeecC--CCceeec
Confidence 12679999999999998855 5899999999998855554 5555543
No 25
>cd01267 CED6_AIDA1b Phosphotyrosine-binding (PTB) domain, phosphotyrosine-interaction (PI) domain. Phosphotyrosine-binding (PTB) domain, phosphotyrosine-interaction (PI) domain. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=95.92 E-value=0.079 Score=39.87 Aligned_cols=72 Identities=8% Similarity=0.049 Sum_probs=52.5
Q ss_pred CceEEEEcCCcEEEEeCCCCCeEEeeecccccccccccCC-ceEEEEecCC----CeEEEEecCC---HHHHHHHHhhhh
Q psy14197 82 KEELLGVTPSRLMRMELSSGDHVRTWRYDTVKAWNVNWEI-KHMMLQLTDG----NFIFECQSAD---CKVVHEFIGGYI 153 (178)
Q Consensus 82 ~p~lLGI~~~gv~~id~~tkeil~~~~~s~i~~w~~~~~~-~~f~l~fg~~----~~~~~~~T~~---~~~i~~Li~~Yi 153 (178)
.+..|-|+.+||.++|++||+++..+|+.+|.=+..+.+. +.|..--.+. -.++.+.+.. ++.|...|+.=.
T Consensus 45 ~~V~L~IS~~gi~i~d~~t~~~l~~~~i~~ISfc~~d~~~~~~FafIa~~~~~~~~~ChvF~~~~~~~A~~I~~tig~AF 124 (132)
T cd01267 45 PKVELDISIKGVKIIDPKTKTVLHGHPLYNISCCAQDKEDLRFFAFIAKDTETNKHYCHVFCSEKLGLAEEIILTIGQAF 124 (132)
T ss_pred CeEEEEEEcCcEEEEeCCCCcEEEEcccceEEEEecCCCCCeEEEEEEecCCCCceEEEEEECCCHHHHHHHHHHHHHHH
Confidence 3579999999999999999999999999999999988744 4455544444 2455555544 455655554433
No 26
>cd01272 FE65_N Fe65 Phosphotyrosine-binding (PTB) domain. Fe65 Phosphotyrosine-binding (PTB) domain. Fe65 is an amyloid beta A4 precursor protein-binding. It contains an N-terminal WW domain followed by two PTB domains. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=95.85 E-value=0.051 Score=41.41 Aligned_cols=80 Identities=14% Similarity=0.261 Sum_probs=59.0
Q ss_pred CCCCceEEEEcCCcEEEEeCCCCCeEEeeecccccccccccC-CceEEEEecCC------CeEEEEecCCHHHHHHHHhh
Q psy14197 79 GHKKEELLGVTPSRLMRMELSSGDHVRTWRYDTVKAWNVNWE-IKHMMLQLTDG------NFIFECQSADCKVVHEFIGG 151 (178)
Q Consensus 79 g~~~p~lLGI~~~gv~~id~~tkeil~~~~~s~i~~w~~~~~-~~~f~l~fg~~------~~~~~~~T~~~~~i~~Li~~ 151 (178)
|..++.+|-+...-+.++||.|+.+|.++|...|+=|.++.+ ..-|...-.+. -..|.|++ .++.|+.-+..
T Consensus 50 geGk~~~m~L~~g~lkLiDP~~~s~LhSqPI~~IRvwGvGrdngrdFA~vard~~T~~~~CHVFRC~~-pak~ia~~l~~ 128 (138)
T cd01272 50 GDGKDLFMDLDEGALKLIDPENLTVLHSQPIHTIRVWGVGRDNGRDFAYVIRDERTRGSNCHVFRCDT-RAKDIATELRR 128 (138)
T ss_pred cCcceeEEEecCCceEeeCCCCCceEEeeeeeEEEEEEecCCCCcceEEEeecCCCceeEEEEEEcCC-CCccchHHHHH
Confidence 455677888999999999999999999999999999999973 22354443333 26777754 56677766666
Q ss_pred hhhHhhhc
Q psy14197 152 YIFLSMRS 159 (178)
Q Consensus 152 Yi~l~~~~ 159 (178)
.+.-+|.-
T Consensus 129 ~c~~~m~e 136 (138)
T cd01272 129 ICRHPMSF 136 (138)
T ss_pred HHHhhhhc
Confidence 66665543
No 27
>cd01269 PLX Pollux (PLX) Phosphotyrosine-binding (PTB) domain. Pollux (PLX) Phosphotyrosine-binding (PTB) domain. PLX is calmodulin-binding protein containing a TBC domain, which is conserved from yeast to man, but it only has an N-terminal PTB domain in mammals. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=95.41 E-value=0.12 Score=38.96 Aligned_cols=67 Identities=13% Similarity=0.175 Sum_probs=50.8
Q ss_pred ceEEEEcCCcEEEEeCCCCCeEEeeeccccccccccc-CCceEEEEecCCC-------eEEEEecCCHHHHHHHH
Q psy14197 83 EELLGVTPSRLMRMELSSGDHVRTWRYDTVKAWNVNW-EIKHMMLQLTDGN-------FIFECQSADCKVVHEFI 149 (178)
Q Consensus 83 p~lLGI~~~gv~~id~~tkeil~~~~~s~i~~w~~~~-~~~~f~l~fg~~~-------~~~~~~T~~~~~i~~Li 149 (178)
-.+|.|+..+|.++||+||.++...+|.+|..=.-+. ..++|-+--++.. .+|.++....+...+.+
T Consensus 44 tm~~~I~~~~v~lispdtK~vl~~k~f~dISsC~qg~~~~dhFgFIcrEs~~~~~~~f~CyVFqc~Se~la~eI~ 118 (129)
T cd01269 44 TMLFQVGRFEINLISPDTKSVVLEKNFKDISSCSQGIKHVDHFGFICRESPEPGLSQYICYVFQCADESLVDEVM 118 (129)
T ss_pred EEEEEEeccceEEEcCCcceEEEecCccccchhhcCCCCcceEEEEeccCCCCCcceEEEEEEEcCCHHHHHHHH
Confidence 3689999999999999999999999999999866554 4567877777661 45666655544444444
No 28
>cd00435 ACBP Acyl CoA binding protein (ACBP) binds thiol esters of long fatty acids and coenzyme A in a one-to-one binding mode with high specificity and affinity. Acyl-CoAs are important intermediates in fatty lipid synthesis and fatty acid degradation and play a role in regulation of intermediary metabolism and gene regulation. The suggested role of ACBP is to act as a intracellular acyl-CoA transporter and pool former. ACBPs are present in a large group of eukaryotic species and several tissue-specific isoforms have been detected.
Probab=95.35 E-value=0.022 Score=40.08 Aligned_cols=31 Identities=23% Similarity=0.368 Sum_probs=26.8
Q ss_pred HHHHHhccCCCChhHHHHHHHHHHhcC-CCCc
Q psy14197 39 ILEAHANVKDLGLTEAKLSYIRAWQSL-PDYG 69 (178)
Q Consensus 39 I~~~h~~~~~ls~~eAK~~yLk~~~~l-p~fG 69 (178)
=..+++++.|||.+|||..||+++.++ |.||
T Consensus 54 K~~AW~~l~~ms~~eA~~~YV~~~~~l~~~~~ 85 (85)
T cd00435 54 KWDAWNSLKGMSKEDAMKAYIAKVEELIAKYA 85 (85)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHhhccC
Confidence 366899999999999999999999765 7776
No 29
>KOG3784|consensus
Probab=95.15 E-value=0.035 Score=49.22 Aligned_cols=118 Identities=13% Similarity=0.133 Sum_probs=83.3
Q ss_pred HHHHhccCCCChhHHHHHHHHHHhcCCCCceeEEEEe---ecCCCCce-EEEEcCCcEEEEeCCCC-CeEEeeecccccc
Q psy14197 40 LEAHANVKDLGLTEAKLSYIRAWQSLPDYGLTLFVIK---PMGHKKEE-LLGVTPSRLMRMELSSG-DHVRTWRYDTVKA 114 (178)
Q Consensus 40 ~~~h~~~~~ls~~eAK~~yLk~~~~lp~fG~tfF~Vk---~~g~~~p~-lLGI~~~gv~~id~~tk-eil~~~~~s~i~~ 114 (178)
.+.|.++..+=+++-+..||.+++.++.||.--|.== ++.+..|+ +..+|.+=++..-..++ .....++++.|+.
T Consensus 232 ~e~~~QL~slq~q~~~~~fL~m~R~l~~Y~~l~f~~c~CD~p~kg~~~~~~~g~~~ll~~~teegq~~q~i~F~~trmr~ 311 (407)
T KOG3784|consen 232 KEQYDQLKSLQEEESMKEFLELARTLEGYGYLIFDPCVCDYPEKGTPAVISVGNHELLLACTEEGQQNQEIAFRWTRMRC 311 (407)
T ss_pred hhhHHHHHHHHHhhhHHHHHHHHHhhccCCeEecCccccCCCCCCCeEEEEEcchhheeeeccCCCccceeEEEeeeeEe
Confidence 3556666777778889999999999999999999532 33333454 45555555555544443 4556699999999
Q ss_pred cccccCCceEEEEec-----CC-CeEEEEecCCHHHHHHHHhhhhhHhh
Q psy14197 115 WNVNWEIKHMMLQLT-----DG-NFIFECQSADCKVVHEFIGGYIFLSM 157 (178)
Q Consensus 115 w~~~~~~~~f~l~fg-----~~-~~~~~~~T~~~~~i~~Li~~Yi~l~~ 157 (178)
|++..+.-.|-+++. +. -.-+...|.+..-|++.+.+-++-++
T Consensus 312 Wrvte~~la~~FEy~~~~~~d~k~rWv~I~T~qa~lMs~Clq~m~~El~ 360 (407)
T KOG3784|consen 312 WRVTEEGLAFSFEYLRDEVKDKKLRWVTIFTPQAILMSECLQSMVSELL 360 (407)
T ss_pred eeccHHHHHHHHHHHHhhccccceeEEEEcCcHHHHHHHHHHHHHHHHH
Confidence 999985444444333 22 24556688999999999999888887
No 30
>PF08416 PTB: Phosphotyrosine-binding domain; InterPro: IPR013625 The phosphotyrosine-binding domain (PTB, also phosphotyrosine-interaction or PI domain) of tensin tends to be found at the C terminus of a protein. Tensin is a multi-domain protein that binds to actin filaments and functions as a focal-adhesion molecule (focal adhesions are regions of plasma membrane through which cells attach to the extracellular matrix). Human tensin has actin-binding sites, an SH2 (IPR000980 from INTERPRO) domain and a region similar to the tumour suppressor PTEN []. The PTB domain interacts with the cytoplasmic tails of beta integrin by binding to an NPXY motif []. ; GO: 0005515 protein binding; PDB: 3HQC_A 2DKQ_A 2LOZ_A 2CY5_A 2CY4_A 2GJY_A 1WVH_A.
Probab=95.08 E-value=0.11 Score=39.33 Aligned_cols=79 Identities=11% Similarity=0.186 Sum_probs=59.7
Q ss_pred ceEEEEcCCcEEEEeCCCCCeEEeeecccccccccccCCc----eEEEEecCC------CeEEEEecCCHHHHHHHHhhh
Q psy14197 83 EELLGVTPSRLMRMELSSGDHVRTWRYDTVKAWNVNWEIK----HMMLQLTDG------NFIFECQSADCKVVHEFIGGY 152 (178)
Q Consensus 83 p~lLGI~~~gv~~id~~tkeil~~~~~s~i~~w~~~~~~~----~f~l~fg~~------~~~~~~~T~~~~~i~~Li~~Y 152 (178)
..+|-|+.+||.+.|..+|+.+..||++.|..=....+.. -|.+...+. ...|.|.-...+++++-|.++
T Consensus 41 ~~~lkV~~~~v~L~D~~~k~~le~yPl~~I~~c~~~~~~~~~~~il~fV~r~~~~~~~~~H~Fqc~ev~a~~~~~~I~~~ 120 (131)
T PF08416_consen 41 EMHLKVSDQGVTLTDIETKEFLEHYPLSSIQFCGADPDSRRYNSILGFVVRKPGSSKPNVHLFQCEEVDAEQPAEDIVSA 120 (131)
T ss_dssp EEEEEEETTEEEEEESSTSSECEEEECCCEEEEEEETTTTEECBEEEEEEEETTCCCEEEEEEEETCTCTTSHHHHHHHH
T ss_pred EEEEEEeCCeEEEEECcccchhhhCCHhHeeeccccCCCCccceEEEEEEecCCCCCCcEEEEEcCCCCHHHHHHHHHHH
Confidence 4689999999999999999999999999999977666443 344444422 256666678899999999888
Q ss_pred hhHhhhccc
Q psy14197 153 IFLSMRSKD 161 (178)
Q Consensus 153 i~l~~~~~~ 161 (178)
+.-.+..++
T Consensus 121 v~~~~~~~~ 129 (131)
T PF08416_consen 121 VSKVKSGKK 129 (131)
T ss_dssp HHHHCCT--
T ss_pred HHHHhcccc
Confidence 877665543
No 31
>smart00462 PTB Phosphotyrosine-binding domain, phosphotyrosine-interaction (PI) domain. PTB/PI domain structure similar to those of pleckstrin homology (PH) and IRS-1-like PTB domains.
Probab=94.83 E-value=0.25 Score=36.46 Aligned_cols=76 Identities=12% Similarity=0.201 Sum_probs=55.7
Q ss_pred CceEEEEcCCcEEEEeCCCCCeEEeeeccccccccccc-CCceEEEEecCC-C-----eEEEEecCCHHHHHHHHhhhhh
Q psy14197 82 KEELLGVTPSRLMRMELSSGDHVRTWRYDTVKAWNVNW-EIKHMMLQLTDG-N-----FIFECQSADCKVVHEFIGGYIF 154 (178)
Q Consensus 82 ~p~lLGI~~~gv~~id~~tkeil~~~~~s~i~~w~~~~-~~~~f~l~fg~~-~-----~~~~~~T~~~~~i~~Li~~Yi~ 154 (178)
.+..|-|+..||.++|..+++++..+|+..|.-...+. +.+.|-+-..+. + ..|.|.+. .+.|...|+....
T Consensus 44 ~~v~l~vs~~gv~v~~~~~~~~l~~~~l~~Isf~~~~~~~~~~F~fI~~~~~~~~~~CHvF~c~~~-a~~i~~~i~~aF~ 122 (134)
T smart00462 44 QKVILSISSRGVKLIDEDTKAVLHEHPLRRISFCAVGPDDLDVFGYIARDPGSSRFACHVFRCEKA-AEDIALAIGQAFQ 122 (134)
T ss_pred CEEEEEEECCcEEEEECCCCeEEEEccccceEEEecCCCCCcEEEEEeeCCCCCeEEEEEEEcCch-HHHHHHHHHHHHH
Confidence 47899999999999999999999999999999988875 344565555544 2 34444443 4667666666665
Q ss_pred Hhhh
Q psy14197 155 LSMR 158 (178)
Q Consensus 155 l~~~ 158 (178)
....
T Consensus 123 ~a~~ 126 (134)
T smart00462 123 LAYE 126 (134)
T ss_pred HHHH
Confidence 5544
No 32
>cd01215 Dab Disabled (Dab) Phosphotyrosine-binding domain. Disabled (Dab) Phosphotyrosine-binding domain. Dab is a cystosolic adaptor protein, which binds to the cytoplasmic tails of lipoprotein receptors, such as ApoER2 and VLDLR, via its PTB domain. The dab PTB domain has a preference for unphosphorylated tyrosine within an NPxY motif. Additionally, the Dab PTB domain, which is structurally similar to PH domains, binds to phosphatidlyinositol phosphate 4,5 bisphosphate in a manner characteristic of phosphoinositide binding PH domains.
Probab=93.05 E-value=0.82 Score=35.19 Aligned_cols=74 Identities=7% Similarity=0.047 Sum_probs=51.8
Q ss_pred CceEEEEcCCcEEEEeCCCCCeEEeeeccccccccccc-CCceEEEEecCC---CeEEEEecC-CHHHHHHHHhhhhhH
Q psy14197 82 KEELLGVTPSRLMRMELSSGDHVRTWRYDTVKAWNVNW-EIKHMMLQLTDG---NFIFECQSA-DCKVVHEFIGGYIFL 155 (178)
Q Consensus 82 ~p~lLGI~~~gv~~id~~tkeil~~~~~s~i~~w~~~~-~~~~f~l~fg~~---~~~~~~~T~-~~~~i~~Li~~Yi~l 155 (178)
....|-|+.+||.++|++|+.++..+|+..|.=-+.+. +.+.|..=.++. ..+|.++|. .++.|---|+.-.++
T Consensus 53 ~kV~L~IS~dGi~v~D~~T~~ll~~~~i~rISfca~D~~d~r~FsyI~~~~~~~H~f~~~k~~k~A~~i~lti~~aF~v 131 (139)
T cd01215 53 TRITLQINIDGIKVLDEKTGAVLHHHPVHRISFIARDSTDARAFGYVYGEPGGKHRFYGIKTAQAADQVVLAIRDLFQV 131 (139)
T ss_pred ceEEEEEccCCEEEEcCCCCcEEEeeceeeEEEEecCCCCCeEEEEEEEcCCCcEEEEEEEhHHcchhhhhhHHHHHHH
Confidence 46799999999999999999999999999988766665 445666666653 245566663 344444333433333
No 33
>cd01274 AIDA-1b AIDA-1b Phosphotyrosine-binding (PTB) domain. AIDA-1b Phosphotyrosine-binding (PTB) domain. AIDA-1b is an amyloid-beta precursor protein interacting protein. It consists of ankyrin repeats, a SAM domain and a C-terminal PTB domain. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=92.88 E-value=1 Score=33.91 Aligned_cols=50 Identities=6% Similarity=0.020 Sum_probs=37.1
Q ss_pred CceEEEEcCCcEEEEeCCCCCeEEeeeccccccccccc-CCceEEEEecCC
Q psy14197 82 KEELLGVTPSRLMRMELSSGDHVRTWRYDTVKAWNVNW-EIKHMMLQLTDG 131 (178)
Q Consensus 82 ~p~lLGI~~~gv~~id~~tkeil~~~~~s~i~~w~~~~-~~~~f~l~fg~~ 131 (178)
.+..|-|+.+||.++|++||+++..+|+..|.=-+-+. +.+.|..--.+.
T Consensus 41 ~~V~L~IS~~Gv~v~d~~tk~~i~~~~i~~ISf~~~D~~d~~~FayIakd~ 91 (127)
T cd01274 41 PRVTLDLTCNGVKFIDETFKTLIDGHGIYNIRCVCQDREDLNFFAYITKDT 91 (127)
T ss_pred CEEEEEEeCCeEEEEECCCCeEEEEeeeeEEEEEecCCCCceEEEEEeeCC
Confidence 46799999999999999999999999998888322233 234555444444
No 34
>PF00887 ACBP: Acyl CoA binding protein; InterPro: IPR000582 Acyl-CoA-binding protein (ACBP) is a small (10 Kd) protein that binds medium- and long-chain acyl-CoA esters with very high affinity and may function as an intracellular carrier of acyl-CoA esters []. ACBP is also known as diazepam binding inhibitor (DBI) or endozepine (EP) because of its ability to displace diazepam from the benzodiazepine (BZD) recognition site located on the GABA type A receptor. It is therefore possible that this protein also acts as a neuropeptide to modulate the action of the GABA receptor []. ACBP is a highly conserved protein of about 90 residues that is found in all four eukaryotic kingdoms, Animalia, Plantae, Fungi and Protista, and in some eubacterial species []. Although ACBP occurs as a completely independent protein, intact ACB domains have been identified in a number of large, multifunctional proteins in a variety of eukaryotic species. These include large membrane-associated proteins with N-terminal ACB domains, multifunctional enzymes with both ACB and peroxisomal enoyl-CoA Delta(3), Delta(2)-enoyl-CoA isomerase domains, and proteins with both an ACB domain and ankyrin repeats (IPR002110 from INTERPRO) []. The ACB domain consists of four alpha-helices arranged in a bowl shape with a highly exposed acyl-CoA-binding site. The ligand is bound through specific interactions with residues on the protein, most notably several conserved positive charges that interact with the phosphate group on the adenosine-3'phosphate moiety, and the acyl chain is sandwiched between the hydrophobic surfaces of CoA and the protein []. Other proteins containing an ACB domain include: Endozepine-like peptide (ELP) (gene DBIL5) from mouse []. ELP is a testis-specific ACBP homologue that may be involved in the energy metabolism of the mature sperm. MA-DBI, a transmembrane protein of unknown function which has been found in mammals. MA-DBI contains a N-terminal ACB domain. DRS-1 [], a human protein of unknown function that contains a N-terminal ACB domain and a C-terminal enoyl-CoA isomerase/hydratase domain. ; GO: 0000062 fatty-acyl-CoA binding; PDB: 2CB8_A 2FJ9_A 2LBB_A 1ST7_A 3EPY_B 2FDQ_C 1NTI_A 1HB8_A 1ACA_A 1NVL_A ....
Probab=92.44 E-value=0.13 Score=35.92 Aligned_cols=26 Identities=27% Similarity=0.334 Sum_probs=23.3
Q ss_pred HHHHhccCCCChhHHHHHHHHHHhcC
Q psy14197 40 LEAHANVKDLGLTEAKLSYIRAWQSL 65 (178)
Q Consensus 40 ~~~h~~~~~ls~~eAK~~yLk~~~~l 65 (178)
..+++++.|||.+|||..||+++.++
T Consensus 57 ~~AW~~l~gms~~eA~~~Yi~~v~~~ 82 (87)
T PF00887_consen 57 WDAWKALKGMSKEEAMREYIELVEEL 82 (87)
T ss_dssp HHHHHTTTTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCCCHHHHHHHHHHHHHHH
Confidence 67899999999999999999998653
No 35
>PTZ00458 acyl CoA binding protein; Provisional
Probab=92.11 E-value=0.15 Score=36.44 Aligned_cols=29 Identities=28% Similarity=0.533 Sum_probs=25.0
Q ss_pred HHHHhccCCCChhHHHHHHHHHHhcC-CCC
Q psy14197 40 LEAHANVKDLGLTEAKLSYIRAWQSL-PDY 68 (178)
Q Consensus 40 ~~~h~~~~~ls~~eAK~~yLk~~~~l-p~f 68 (178)
..++.++.|||.+|||-+||+++..+ |.+
T Consensus 57 w~AW~~l~~ms~~eA~~~YI~l~~~l~~~w 86 (90)
T PTZ00458 57 YEAWKSIENLNREDAKKRYVEIVTELFPNW 86 (90)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHhhcc
Confidence 45888999999999999999999776 544
No 36
>cd01273 CED-6 CED-6 Phosphotyrosine-binding (PTB) domain. CED-6 Phosphotyrosine-binding (PTB) domain. CED6 is an adaptor protein involved in the engulfment of apoptotic cells. It has a C-terminal PTB domain, which can bind to NPXY motifs. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=91.40 E-value=0.84 Score=34.86 Aligned_cols=70 Identities=9% Similarity=0.079 Sum_probs=48.8
Q ss_pred CceEEEEcCCcEEEEeCCCCCeEEeeecccccccccccC-CceEEEEecCC-----CeEEEEecCC-HHHHHHHHhh
Q psy14197 82 KEELLGVTPSRLMRMELSSGDHVRTWRYDTVKAWNVNWE-IKHMMLQLTDG-----NFIFECQSAD-CKVVHEFIGG 151 (178)
Q Consensus 82 ~p~lLGI~~~gv~~id~~tkeil~~~~~s~i~~w~~~~~-~~~f~l~fg~~-----~~~~~~~T~~-~~~i~~Li~~ 151 (178)
.+..|-|+.+||.++|++||+++..+++..|.-=+.+.+ .+.|..--.+. -.++.+.+.+ ++.|..-|+.
T Consensus 55 ~~V~L~IS~~GI~v~d~~t~~~~~~~~i~~ISfca~d~~~~r~FayIak~~~~~~~~~ChvF~s~~~A~~I~~tigq 131 (142)
T cd01273 55 QKVEIRISIDGVIIAEPKTKAPMHTFPLGRISFCADDKDDKRMFSFIAKAEGASGKHSCFVFTSEKLAEDITLTIGQ 131 (142)
T ss_pred cEEEEEEECCeEEEEEcCCCcEEEEcCcceEEEEecCCCCCeEEEEEecCCCCCCcEEEEEEeccchHHHHHHHHHH
Confidence 367999999999999999999999999999987666553 34454444443 2455555533 5555554443
No 37
>KOG3535|consensus
Probab=90.82 E-value=0.48 Score=42.70 Aligned_cols=60 Identities=5% Similarity=0.086 Sum_probs=50.2
Q ss_pred CceEEEEcCCcEEEEeCCCCCeEEeeeccccccccccc-CCceEEEEecCC--CeEEEEecCC
Q psy14197 82 KEELLGVTPSRLMRMELSSGDHVRTWRYDTVKAWNVNW-EIKHMMLQLTDG--NFIFECQSAD 141 (178)
Q Consensus 82 ~p~lLGI~~~gv~~id~~tkeil~~~~~s~i~~w~~~~-~~~~f~l~fg~~--~~~~~~~T~~ 141 (178)
..+.|-|+-.||.++|+|||.++..+|.+.|.-.+-+. +.+.|=..+|.. ...|..+|.+
T Consensus 92 qrI~l~Is~~GIKI~DEKtGav~H~hpV~~ISfIArD~tD~RAFGyVcG~eG~hkF~aIKTaQ 154 (557)
T KOG3535|consen 92 QRITLQISIDGIKILDEKTGAVLHNHPVSRISFIARDSTDARAFGYVCGEEGKHKFYAIKTAQ 154 (557)
T ss_pred ceEEEEEeecceEEeeccccceeccCccceeeeeecccccccceeeeecCCCceeEEEEeccc
Confidence 36799999999999999999999999999988766443 457898888887 3678889965
No 38
>cd01208 X11 X11 Phosphotyrosine-binding (PTB) domain. X11 Phosphotyrosine-binding (PTB) domain. The neuronal protein X11 has a PTB domain followed by two PDZ domains. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether. X11 binds to the cytoplasmic domain of the beta-amyloid precursor protein (beta-APP) and does not require the substrate to be tyrosine-phosphorylated for binding.
Probab=89.44 E-value=2.3 Score=33.40 Aligned_cols=74 Identities=12% Similarity=0.159 Sum_probs=53.1
Q ss_pred ceEEEEcCCcEEEEeCCCCCeEEeeecccccccccccCCceEEEE----e---------------cC-C----CeEEEEe
Q psy14197 83 EELLGVTPSRLMRMELSSGDHVRTWRYDTVKAWNVNWEIKHMMLQ----L---------------TD-G----NFIFECQ 138 (178)
Q Consensus 83 p~lLGI~~~gv~~id~~tkeil~~~~~s~i~~w~~~~~~~~f~l~----f---------------g~-~----~~~~~~~ 138 (178)
+.-|-|+-+||.++|++||+++..+++..|.=-+ +.. +.|.+- + +. . ..++.++
T Consensus 51 ~V~L~IS~~gV~v~~~~tk~im~~h~L~~ISy~A-D~~-d~~v~mAkr~~~~~~~~~~~~~~~~~~~~~~~~k~~ChVFe 128 (156)
T cd01208 51 EVDLFISTEKIMVLNTDLQEIXMDHALRTISYIA-DIG-DLVVLMARRRIPRSSSQENSEASHPSQDGKRTPKXICHVFE 128 (156)
T ss_pred EEEEEEEeCeEEEEecCccceeccCcccceEEEe-cCC-CeEEEEEeccccccccccccccCCcccccccccceeEEEEe
Confidence 5789999999999999999999999998886432 332 222221 0 00 0 3688889
Q ss_pred cCCHHHHHHHHhhhhhHhhh
Q psy14197 139 SADCKVVHEFIGGYIFLSMR 158 (178)
Q Consensus 139 T~~~~~i~~Li~~Yi~l~~~ 158 (178)
+.+.+.|..-|+.=.++-.+
T Consensus 129 s~~Aq~Ia~TIGQAF~lAY~ 148 (156)
T cd01208 129 SDEAQFIAQSIGQAFQVAYQ 148 (156)
T ss_pred cCcHHHHHHHHHHHHHHHHH
Confidence 98888888888776665443
No 39
>cd01210 EPS8 Epidermal growth factor receptor kinase substrate (EPS8) Phosphotyrosine-binding (PTB) domain. Epidermal growth factor receptor kinase substrate (EPS8) Phosphotyrosine-binding (PTB) domain. EPS8 is a regulator of Rac signaling. It consists of a PTB and an SH3 domain. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=87.39 E-value=3.2 Score=31.48 Aligned_cols=71 Identities=10% Similarity=0.178 Sum_probs=50.8
Q ss_pred ceEEEEcCCcEEEEeCCCCCeEEeeeccccccccccc----CCceEEEEecCC------CeEEEEecCCHHHHHHHHhhh
Q psy14197 83 EELLGVTPSRLMRMELSSGDHVRTWRYDTVKAWNVNW----EIKHMMLQLTDG------NFIFECQSADCKVVHEFIGGY 152 (178)
Q Consensus 83 p~lLGI~~~gv~~id~~tkeil~~~~~s~i~~w~~~~----~~~~f~l~fg~~------~~~~~~~T~~~~~i~~Li~~Y 152 (178)
+.+|-|+...|.++|++||+.+..||++.|.+-.+-. -.+-+++..-+. ..-|-|++.-+..|.+=|...
T Consensus 43 ~m~lqv~~~~v~LlD~etk~elE~fpl~~I~~~~a~~~~~~ynslL~~vvq~~~~~~~e~hlFQc~~v~A~~i~~DL~~a 122 (127)
T cd01210 43 KMILRVRYQWVTLLDYETKEELESYPLSLIQEPTAFTSMELYNSILLFVVQEPGGSRTEMHIFQCQRVGAEHLVEDLQQA 122 (127)
T ss_pred ceEEEEcCCeEEEEcCCCcChhhcCCHhhccccceecCCCCcCceEEEEEeCCCCCCCcEEEEEeccccHHHHHHHHHHH
Confidence 5699999999999999999999999999999865332 123345555544 256667776677766555444
Q ss_pred h
Q psy14197 153 I 153 (178)
Q Consensus 153 i 153 (178)
+
T Consensus 123 ~ 123 (127)
T cd01210 123 L 123 (127)
T ss_pred H
Confidence 3
No 40
>PF06017 Myosin_TH1: Myosin tail; InterPro: IPR010926 These proteins share a region of sequence similarity with the tail of myosin (for example O00159 from SWISSPROT). Myosins act as molecular motors. ; GO: 0003774 motor activity, 0016459 myosin complex
Probab=87.01 E-value=5.3 Score=31.96 Aligned_cols=73 Identities=12% Similarity=0.168 Sum_probs=51.2
Q ss_pred CCCCceEEEEcCCcEEEE------eCCCCCeEEeeecccccccccccC-CceEEEEecCC-CeEEEEecCCHHHHHHHHh
Q psy14197 79 GHKKEELLGVTPSRLMRM------ELSSGDHVRTWRYDTVKAWNVNWE-IKHMMLQLTDG-NFIFECQSADCKVVHEFIG 150 (178)
Q Consensus 79 g~~~p~lLGI~~~gv~~i------d~~tkeil~~~~~s~i~~w~~~~~-~~~f~l~fg~~-~~~~~~~T~~~~~i~~Li~ 150 (178)
++..|+.|-|+.+.|.++ ++++..+-...|+++|..-.+++. ++.|.|-+.+. +.-|.|. ...|-+.-|+.
T Consensus 63 ~K~~~R~livT~~~iY~l~~~~~~~~~~~~~kr~i~l~~I~~IsvS~~~D~~~vihv~~~~D~il~~~-~k~Elv~~L~~ 141 (199)
T PF06017_consen 63 NKPQPRILIVTDKAIYLLDQRKVKDPKKYKLKRRIPLSDITGISVSPLSDNFFVIHVPGEGDLILESD-FKTELVTILCK 141 (199)
T ss_pred CCccceEEEEeCCeEEEEEEeecCCceeeEEEeccCcccccEEEEccCCCCEEEEEECCCCCEEEEeC-cHHHHHHHHHH
Confidence 344589999999999999 667778999999999999998884 45577877444 5333332 23444444444
Q ss_pred hh
Q psy14197 151 GY 152 (178)
Q Consensus 151 ~Y 152 (178)
.|
T Consensus 142 ~~ 143 (199)
T PF06017_consen 142 AY 143 (199)
T ss_pred HH
Confidence 44
No 41
>cd01209 SHC SHC phosphotyrosine-binding (PTB) domain. SHC phosphotyrosine-binding (PTB) domain. SHC is a substrate for receptor tyrosine kinases, which can interact with phosphoproteins at NPXY motifs. SHC contains an PTB domain followed by an SH2 domain. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=85.09 E-value=3.2 Score=32.67 Aligned_cols=74 Identities=9% Similarity=0.022 Sum_probs=50.4
Q ss_pred ceEEEEcCCcEEEEeCCCCCeEEeeeccccccccccc-CC-ceEEEEecCC---CeEEEEecCC--HHHHHHHHhhhhhH
Q psy14197 83 EELLGVTPSRLMRMELSSGDHVRTWRYDTVKAWNVNW-EI-KHMMLQLTDG---NFIFECQSAD--CKVVHEFIGGYIFL 155 (178)
Q Consensus 83 p~lLGI~~~gv~~id~~tkeil~~~~~s~i~~w~~~~-~~-~~f~l~fg~~---~~~~~~~T~~--~~~i~~Li~~Yi~l 155 (178)
+.-|.|+.+||.+++++||++++.+++..|.==+-+- +. +.|..-=.+. ..++.+++.+ .+.|..-|+.=.++
T Consensus 76 ~V~l~IS~~~v~~~~~~t~~ii~~H~l~~ISfaa~gd~d~~~~~ayIAKd~~~~r~ChVf~~~~~lAq~Ii~TIGQAF~l 155 (160)
T cd01209 76 PITINVSSSSLNLMAQDCKQIIANHHMQSISFASGGDPDTAEYVAYIAKNPDNQRACHVLECPEGLAQDLISTIGQAFEL 155 (160)
T ss_pred eEEEEEEeeEEEEeccCchhHHhcCCCcceEEEeCCCCCcceeEEEEEcCCCCCceeEEEEcCCchHHHHHHHHHHHHHH
Confidence 6899999999999999999999999999886533222 21 2232222222 3577777655 77777777665554
Q ss_pred h
Q psy14197 156 S 156 (178)
Q Consensus 156 ~ 156 (178)
-
T Consensus 156 a 156 (160)
T cd01209 156 R 156 (160)
T ss_pred H
Confidence 3
No 42
>PF14470 bPH_3: Bacterial PH domain
Probab=82.01 E-value=14 Score=25.26 Aligned_cols=66 Identities=14% Similarity=0.143 Sum_probs=46.3
Q ss_pred CCCceEEEEcCCcEEEEeCC--CCCeEEeeeccccccccccc--CCceEEEEecCCCeEEEEecCCHHHHHH
Q psy14197 80 HKKEELLGVTPSRLMRMELS--SGDHVRTWRYDTVKAWNVNW--EIKHMMLQLTDGNFIFECQSADCKVVHE 147 (178)
Q Consensus 80 ~~~p~lLGI~~~gv~~id~~--tkeil~~~~~s~i~~w~~~~--~~~~f~l~fg~~~~~~~~~T~~~~~i~~ 147 (178)
...+.++.++-++|++++.. ++.....+||++|.+-+... -...+++..++....+ .......+..
T Consensus 20 ~~~~g~l~~TnkRlif~~~~~~~~~~~~~i~y~~I~~v~~~~g~~~~~i~i~~~~~~~~i--~~i~k~~~~~ 89 (96)
T PF14470_consen 20 TSFPGVLVLTNKRLIFYSKGMFGGKKFESIPYDDITSVSFKKGILGGKITIETNGEKIKI--DNIQKGDVKE 89 (96)
T ss_pred cCceeEEEEeCCEEEEEEcccCCCceEEEEEhhheEEEEEEccccccEEEEEECCEEEEE--EEcCHHHHHH
Confidence 34578999999999999886 46889999999999977663 2355777774444333 3334444443
No 43
>PF10480 ICAP-1_inte_bdg: Beta-1 integrin binding protein; InterPro: IPR019517 ICAP-1 is a serine/threonine-rich protein that binds to the cytoplasmic domains of beta-1 integrins in a highly specific manner, binding to a NPXY sequence motif on the beta-1 integrin. The cytoplasmic domains of integrins are essential for cell adhesion, and the fact that phosphorylation of ICAP-1 by interaction with the cell-matrix implies an important role of ICAP-1 during integrin-dependent cell adhesion []. Over expression of ICAP-1 strongly reduces the integrin-mediated cell spreading on extracellular matrix and inhibits both Cdc42 and Rac1. In addition, ICAP-1 induces release of Cdc42 from cellular membranes and prevents the dissociation of GDP from this GTPase []. An additional function of ICAP-1 is to promote differentiation of osteoprogenitors by supporting their condensation through modulating the integrin high affinity state [].
Probab=79.59 E-value=17 Score=29.55 Aligned_cols=92 Identities=13% Similarity=0.125 Sum_probs=61.5
Q ss_pred HHHHHHHHHhcCCCCceeEEEEeecCCCCceEEEEcCCcEEEEeCCCCCeEEeeecccccccc-ccc----CCceEEEEe
Q psy14197 54 AKLSYIRAWQSLPDYGLTLFVIKPMGHKKEELLGVTPSRLMRMELSSGDHVRTWRYDTVKAWN-VNW----EIKHMMLQL 128 (178)
Q Consensus 54 AK~~yLk~~~~lp~fG~tfF~Vk~~g~~~p~lLGI~~~gv~~id~~tkeil~~~~~s~i~~w~-~~~----~~~~f~l~f 128 (178)
--+.||...|++--.= | | ....+.+|+|++.||.+.|.+...++..+|+=.|.+.- +.. ..+-|.+..
T Consensus 87 ~lI~~ID~aQq~GkLP---~-v---~~~eevil~VSKyGiKvt~~d~~~VL~RhpL~~Ivr~V~YdDGlG~g~~llAlK~ 159 (200)
T PF10480_consen 87 ELINYIDSAQQDGKLP---F-V---PSDEEVILSVSKYGIKVTDNDQRDVLHRHPLHEIVRMVCYDDGLGAGKNLLALKV 159 (200)
T ss_pred HHHHHHHHHhhcCcCC---C-C---CCCCeEEEEEeeccEEEeecCCcceeeeeeeeeEEEEEEEecCcCCcceEEEEEc
Confidence 4577777776542111 1 0 11135699999999999999999999999999998643 222 224566777
Q ss_pred cCC-C---eEEEEecCCHHHHHHHHhhh
Q psy14197 129 TDG-N---FIFECQSADCKVVHEFIGGY 152 (178)
Q Consensus 129 g~~-~---~~~~~~T~~~~~i~~Li~~Y 152 (178)
++. + ..+..+++...+..++|.-+
T Consensus 160 ~~~~~e~y~l~v~Qcss~~qA~~ICk~l 187 (200)
T PF10480_consen 160 GDERQEEYQLWVYQCSSDEQAQEICKVL 187 (200)
T ss_pred cCCCcceEEEEEEEcCCHHHHHHHHHHH
Confidence 766 2 55666887766666666433
No 44
>cd01212 JIP JNK-interacting protein (JIP) Phosphotyrosine-binding (PTB) domain. JNK-interacting protein (JIP) Phosphotyrosine-binding (PTB) domain. JIP is a mitogen-activated protein kinase scaffold protein. JIP consists of a C-terminal SH3 domain, followed by a PTB domain. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=79.18 E-value=17 Score=28.14 Aligned_cols=74 Identities=9% Similarity=0.027 Sum_probs=45.4
Q ss_pred ceEEEEcCCcEEEEeCCCCCeEEe------eecccccccccccCC-ceEEEEecCC----CeEEEEec-CCHHHHHHHHh
Q psy14197 83 EELLGVTPSRLMRMELSSGDHVRT------WRYDTVKAWNVNWEI-KHMMLQLTDG----NFIFECQS-ADCKVVHEFIG 150 (178)
Q Consensus 83 p~lLGI~~~gv~~id~~tkeil~~------~~~s~i~~w~~~~~~-~~f~l~fg~~----~~~~~~~T-~~~~~i~~Li~ 150 (178)
...|-|+.+||.++|+.|++.+.. +++.+|.=.+..++. +.|..=-.+. ..++.+.+ ..++.|..-|+
T Consensus 46 ~v~L~VS~~Girl~D~~t~~~~~~~~~~~f~~l~nISFCa~d~~~~r~F~FIak~~~~~~~~CHVF~s~~~~~~I~~aIG 125 (148)
T cd01212 46 TCILEISDRGLRMVDRSGPNKDKKPCIDFFYSLKNISFCGFHPRDHRYFGFITKHPLLQRFACHVFKSSESTRPVAEAVG 125 (148)
T ss_pred EEEEEEecCcEEEEecCCCcccccchhhccccccceEEEEEcCCCCcEEEEEeccCCCCceEEEEEEeCCcchHHHHHHH
Confidence 479999999999999999964321 347777666666643 3333322222 24444455 45677776665
Q ss_pred hhhhHh
Q psy14197 151 GYIFLS 156 (178)
Q Consensus 151 ~Yi~l~ 156 (178)
-=.+..
T Consensus 126 ~AF~~~ 131 (148)
T cd01212 126 RAFQRF 131 (148)
T ss_pred HHHHHH
Confidence 444433
No 45
>COG4281 ACB Acyl-CoA-binding protein [Lipid metabolism]
Probab=77.32 E-value=2.3 Score=29.59 Aligned_cols=27 Identities=30% Similarity=0.357 Sum_probs=24.4
Q ss_pred HHHHhccCCCChhHHHHHHHHHHhcCC
Q psy14197 40 LEAHANVKDLGLTEAKLSYIRAWQSLP 66 (178)
Q Consensus 40 ~~~h~~~~~ls~~eAK~~yLk~~~~lp 66 (178)
++++..+.|.|.++|.-+||.++..|.
T Consensus 56 ~eAW~~LKGksqedA~qeYialVeeLk 82 (87)
T COG4281 56 YEAWAGLKGKSQEDARQEYIALVEELK 82 (87)
T ss_pred HHHHhhccCccHHHHHHHHHHHHHHHH
Confidence 678999999999999999999997764
No 46
>KOG0817|consensus
Probab=77.01 E-value=2.4 Score=32.69 Aligned_cols=37 Identities=19% Similarity=0.321 Sum_probs=30.1
Q ss_pred HHHHhccCCCChhHHHHHHHHHHhc-CCCCceeEEEEe
Q psy14197 40 LEAHANVKDLGLTEAKLSYIRAWQS-LPDYGLTLFVIK 76 (178)
Q Consensus 40 ~~~h~~~~~ls~~eAK~~yLk~~~~-lp~fG~tfF~Vk 76 (178)
.++++++.|||..||+-.||+.+.. .|.|+..-=.+.
T Consensus 59 w~AW~~l~~~s~~eA~~~Yv~~~~~l~~~~~~~~~~~~ 96 (142)
T KOG0817|consen 59 WQAWNSLGGMSKEEAMEAYVEKVEELIPKYGAEAETEE 96 (142)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhccccccc
Confidence 5679999999999999999999954 577877654443
No 47
>cd01211 GAPCenA GAPCenA Phosphotyrosine-binding (PTB) domain. GAPCenA Phosphotyrosine-binding (PTB) domain. GAPCenA is a centrosome-associated GTPase activating protein (GAP) for rab 6. It consists of an N-terminal PTB domain and a C-terminal TBC domain. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=75.88 E-value=19 Score=27.20 Aligned_cols=61 Identities=10% Similarity=0.162 Sum_probs=43.0
Q ss_pred CCc-EEEEeCCCCCeEEeeeccccccccccc----CCceEEEEecCC------CeEEEEecCCHHHHHHHHhhh
Q psy14197 90 PSR-LMRMELSSGDHVRTWRYDTVKAWNVNW----EIKHMMLQLTDG------NFIFECQSADCKVVHEFIGGY 152 (178)
Q Consensus 90 ~~g-v~~id~~tkeil~~~~~s~i~~w~~~~----~~~~f~l~fg~~------~~~~~~~T~~~~~i~~Li~~Y 152 (178)
.+| |.++|+.|+..++++|.-.|.=+..+. +.+.|.+...+. -+.|.|+ ..+.+...+.+.
T Consensus 49 seG~V~l~D~~t~~~ias~~I~rI~fC~rG~~~t~e~~cFAft~s~~~se~~qcHVFrC~--~~eav~kil~sF 120 (125)
T cd01211 49 IEGTVKLIDAQSNKVIASFSIVNIRFCIRGESSTSENNCFAFTFTHKISILFQCHVFRCS--IAEAVAKALYSF 120 (125)
T ss_pred CCceEEEEcCCCCcEEEEEEEEEEEEEEecCCCCcccccEEEEeecCCceEEEEEEEecC--CHHHHHHHHHHH
Confidence 445 999999999999999999999998865 455677665544 1456554 455555555443
No 48
>PF14317 YcxB: YcxB-like protein
Probab=69.70 E-value=22 Score=21.86 Aligned_cols=56 Identities=13% Similarity=0.073 Sum_probs=37.6
Q ss_pred EcCCcEEEEeCCCCCeEEeeecccccccccccCCceEEEEecCCCeEEEEec-CCHHHHHHH
Q psy14197 88 VTPSRLMRMELSSGDHVRTWRYDTVKAWNVNWEIKHMMLQLTDGNFIFECQS-ADCKVVHEF 148 (178)
Q Consensus 88 I~~~gv~~id~~tkeil~~~~~s~i~~w~~~~~~~~f~l~fg~~~~~~~~~T-~~~~~i~~L 148 (178)
++.+||..- ++..-..+++++|.+|.-.. +.+.|.+++....+.+.. ....+++++
T Consensus 1 f~~~gi~~~---~~~~~~~~~w~~i~~v~e~~--~~~~l~~~~~~~~~iPk~~f~~~e~~~f 57 (62)
T PF14317_consen 1 FDEDGIIIE---SGNGSSRIPWSDIKKVVETK--DYFYLYLGKNQAFIIPKRAFSEEEKEEF 57 (62)
T ss_pred CCCCEEEEE---ECCeEEEEEchheEEEEEeC--CEEEEEECCCeEEEEEHHHCCHhHHHHH
Confidence 356777774 46667789999999999888 888888876644444443 223444444
No 49
>cd01270 DYC-1 DYC-1 (DYB-1 binding and Capon related) Phosphotyrosine-binding (PTB) domain. DYC-1 (DYB-1 binding and Capon related) Phosphotyrosine-binding (PTB) domain. DYC-1 contains an N-terminal PTB domain. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. The PTB domains of both SHC and IRS-1, for example, bind to a NPXpY sequence. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated; whereas, other PTB domains can bind motifs lacking tyrosine residues altogether.
Probab=66.92 E-value=54 Score=25.25 Aligned_cols=69 Identities=12% Similarity=-0.021 Sum_probs=42.9
Q ss_pred CceEEEEcCCcEEEEeCC------------CCCeEEeeecccccccccccC-CceEEEEecCC----CeEEEEecC---C
Q psy14197 82 KEELLGVTPSRLMRMELS------------SGDHVRTWRYDTVKAWNVNWE-IKHMMLQLTDG----NFIFECQSA---D 141 (178)
Q Consensus 82 ~p~lLGI~~~gv~~id~~------------tkeil~~~~~s~i~~w~~~~~-~~~f~l~fg~~----~~~~~~~T~---~ 141 (178)
++..|-|+.+||.++|.+ ||.++..+|+..|.==+.+++ .+.|..=-.+. -.++.+.+. +
T Consensus 43 ~kV~l~VS~~Gv~v~d~k~~~~~~~~~~~~tk~li~~~~i~rISf~a~D~~~~k~FayIakd~~~~~~~ChvF~~~k~~~ 122 (140)
T cd01270 43 RKVTIHVSVDGVKVVLKKKKRKKKNWTWDESKILVMNHPIYRIFYVSHDSQDLKIFSYIARDGASNTFKCNVFKSHKKSQ 122 (140)
T ss_pred eeEEEEEecCcEEEEecccccccccccccCcccEEEecCeeEEEEeecCCCCCcEEEEEecCCCCCceEEEEEEEcChhh
Confidence 367899999999999986 567888888887766555543 33343322232 234444544 3
Q ss_pred HHHHHHHHh
Q psy14197 142 CKVVHEFIG 150 (178)
Q Consensus 142 ~~~i~~Li~ 150 (178)
++.|--.|+
T Consensus 123 A~~I~~TIG 131 (140)
T cd01270 123 AMRIVRTVG 131 (140)
T ss_pred HHHHHHHHH
Confidence 455554444
No 50
>cd01271 Fe65_C Fe65 C-terminal Phosphotyrosine-binding (PTB) domain. Fe65 C-terminal Phosphotyrosine-binding (PTB) domain. Fe65 is an amyloid beta A4 precursor (APP) protein-binding. It contains an N-terminal WW domain followed by two PTB domains. The C-terminal PTB domain is responsible for APP binding. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=64.54 E-value=59 Score=24.54 Aligned_cols=72 Identities=13% Similarity=0.189 Sum_probs=50.6
Q ss_pred ceEEEEcCCcEEEEeCCC-CCeEEeeecccccccccccCCceEEEEecCC-----CeEEEEecCCHHHHHHHHhhhhhH
Q psy14197 83 EELLGVTPSRLMRMELSS-GDHVRTWRYDTVKAWNVNWEIKHMMLQLTDG-----NFIFECQSADCKVVHEFIGGYIFL 155 (178)
Q Consensus 83 p~lLGI~~~gv~~id~~t-keil~~~~~s~i~~w~~~~~~~~f~l~fg~~-----~~~~~~~T~~~~~i~~Li~~Yi~l 155 (178)
|..+.|++.+|.++++++ .+++...|..-|.=..++.+.+.|.+=.... -..|.|+.+-+ .+.+-++.=..+
T Consensus 41 ~V~vsvaps~v~v~~~~~~~~~l~ecrVr~lSF~GvgKd~k~fafI~~~~~~~f~ChVF~ce~~A~-~ls~av~aAc~l 118 (124)
T cd01271 41 SVNVNVAPSTITVISEKNEEEVLVECRVRYLSFLGIGKDVHTCAFIMDTGNQRFECHVFWCEPNAG-NVSKAVEAACKL 118 (124)
T ss_pred eEEEEeCCceEEEEccCccceeeeeeeEEEeccccCCCCccEEEEEEecCCCcEEEEEEEecCChH-HHHHHHHHHHHH
Confidence 679999999999999997 6899999988888888877656554433322 25566665433 566555544433
No 51
>KOG3537|consensus
Probab=52.93 E-value=1.1e+02 Score=28.26 Aligned_cols=73 Identities=11% Similarity=0.087 Sum_probs=44.9
Q ss_pred eEEEEcCCcEEEEeCCCCCeEEeeeccccccccccc-CCceEEEEecCC-CeEEEEec-----CCHHHHHHHHhhhhhHh
Q psy14197 84 ELLGVTPSRLMRMELSSGDHVRTWRYDTVKAWNVNW-EIKHMMLQLTDG-NFIFECQS-----ADCKVVHEFIGGYIFLS 156 (178)
Q Consensus 84 ~lLGI~~~gv~~id~~tkeil~~~~~s~i~~w~~~~-~~~~f~l~fg~~-~~~~~~~T-----~~~~~i~~Li~~Yi~l~ 156 (178)
-+|=|+.+|+-++|.+||..|..--...+.--+-+. -++.|.--..|. +.+..|-. ..|+..+.-++--...-
T Consensus 75 avL~VS~DGLRVVD~~tk~LiVDQTIEKVSFCAPDRn~Dr~FsYICRDGttRRW~CH~FlA~KdsGERLSHAVGCAFa~C 154 (543)
T KOG3537|consen 75 AVLWVSGDGLRVVDDKTKGLIVDQTIEKVSFCAPDRNHDRGFSYICRDGTTRRWMCHGFLACKDSGERLSHAVGCAFAAC 154 (543)
T ss_pred eEEEEccCceEEeccCccceeeeeeeeeeeccccccccccceeEEeecCCcceeeeeeeeeecchhhHHHHHHHHHHHHH
Confidence 499999999999999999999877666555433322 233444444455 44444442 34666655444333333
No 52
>PHA03225 DNA packaging protein UL33; Provisional
Probab=52.58 E-value=13 Score=28.07 Aligned_cols=54 Identities=19% Similarity=0.178 Sum_probs=35.8
Q ss_pred ccccccccCChHHHHHhhhH-HHHHHHH-----HHhc-cCC---------CChhHHHHHHHHHHhcCCCC
Q psy14197 15 LDICAEDYVSSRYIKKLRSK-LSQRILE-----AHAN-VKD---------LGLTEAKLSYIRAWQSLPDY 68 (178)
Q Consensus 15 ~~~~l~~~lP~~~ik~~~~k-~~~~I~~-----~h~~-~~~---------ls~~eAK~~yLk~~~~lp~f 68 (178)
+...++|.+|..-+...+.. +..+=.. .+.- +.. +...+||+.||..||++..|
T Consensus 9 ~~~rl~~~Ip~~~l~~~~l~~L~~~Y~~~~~~~~~~iwFe~mlP~eiE~ilPTtDaKLNyLs~tqrlasf 78 (125)
T PHA03225 9 TAARLDELIDEEELAERPLSELFRDYIESAGEPRYEIWFFDLSPPEIELALPTTDAKLNYLAHTANLAAA 78 (125)
T ss_pred ccchHHHhCCHHHHhhCCHHHHHHHhcCCCCCceEEEEecccCcHHHHHhcchhHHHHHHHHHHHHHHHH
Confidence 34689999999988877754 4333210 0000 122 44578999999999999876
No 53
>PF15277 Sec3-PIP2_bind: Exocyst complex component SEC3 N-terminal PIP2 binding PH; PDB: 3HIE_D 3A58_E.
Probab=52.07 E-value=81 Score=22.16 Aligned_cols=53 Identities=19% Similarity=0.182 Sum_probs=35.4
Q ss_pred CeEEeeecccccccccccCC---ceEEEEecCCCeEEEEecCCHHHHHHHHhhhhhHhh
Q psy14197 102 DHVRTWRYDTVKAWNVNWEI---KHMMLQLTDGNFIFECQSADCKVVHEFIGGYIFLSM 157 (178)
Q Consensus 102 eil~~~~~s~i~~w~~~~~~---~~f~l~fg~~~~~~~~~T~~~~~i~~Li~~Yi~l~~ 157 (178)
.+-.+|++.+|+........ ..|.|.|+. .|..++...++=..+|..-+.+..
T Consensus 34 ~i~ktW~L~eL~~I~~~~~~~~~~~F~l~~~k---~y~W~a~s~~Ek~~Fi~~L~k~~~ 89 (91)
T PF15277_consen 34 QIGKTWDLDELKAIDGINPDKDTPEFDLTFDK---PYYWEASSAKEKNTFIRSLWKLYQ 89 (91)
T ss_dssp EEEEEEEGGG--EEEE-SSS--TTEEEEESSS---EEEEEESSHHHHHHHHHHHHHHHH
T ss_pred EEeeEEehhhceeeeeecCCCCCcCEEEEECC---CcEEEeCCHHHHHHHHHHHHHHhc
Confidence 67889999999998855533 479999975 566777666554566666555543
No 54
>PF03413 PepSY: Peptidase propeptide and YPEB domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification. ; InterPro: IPR005075 This signature, PepSY, is found in the propeptide of members of the MEROPS peptidase family M4 (clan MA(E)), which contains the thermostable thermolysins (3.4.24.27 from EC), and related thermolabile neutral proteases (bacillolysins) (3.4.24.28 from EC) from various species of Bacillus. It is also in many non-peptidase proteins, including Bacillus subtilis YpeB protein - a regulator of SleB spore cortex lytic enzyme - and a large number of eubacterial and archaeal cell wall-associated and secreted proteins which are mostly annotated as 'hypothetical protein'. Many extracellular bacterial proteases are produced as proenzymes. The propeptides usually have a dual function, i.e. they function as an intramolecular chaperone required for the folding of the polypeptide and as an inhibitor preventing premature activation of the enzyme. Analysis of the propeptide region of the M4 family of peptidases reveals two regions of conservation, the PepSY domain and a second domain, proximate to the N terminus, the FTP domain (IPR011096 from INTERPRO), which is also found in isolation in the propeptide of eukaryotic peptidases belong to MEROPS peptidase family M36. Propeptide domain swapping experiments, for example swapping the propeptide domain of PA protease with that of vibrolysin, both propeptides contain the FTP and PepSY domains, allows the PA protease domain to fold correctly and inhibits the C-terminal autoprocessing activity. However, swapping the propeptide of PA protease for the thermolysin propeptide, does not facilitate the correct folding nor the processing of the chimaeric protein into an active peptidase []. Mutational analysis of the Pseudomonas aeruginosa elastase gene revealed two mutations in the propeptide which resulted in the loss of inhibitory activity but not chaperone activity: A-15V and T-153I (where +1 is defined as the first residue of the mature peptidase). Both mutations resulted in peptidase activity, the T-153V mutation being much less effective than the A-15I mutation [] in activating peptidase activity. The T-153V mutation lies N-terminal to the FTP domain while the A-15I mutation is C-terminal to the PepSY domain. Given the diverse range of other proteins, both domains occur in in isolation, the exact function of each is still unclear; though it has been proposed that the PepSY domain primarily has inhibitory activity and in conjunction with the FTP domain in chaperone activity. ; GO: 0008237 metallopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis, 0005576 extracellular region; PDB: 2GU3_A 3NQZ_A 3NQY_A 2KGY_A.
Probab=50.60 E-value=15 Score=22.87 Aligned_cols=14 Identities=7% Similarity=0.401 Sum_probs=9.8
Q ss_pred EEEeCCCCCeEEee
Q psy14197 94 MRMELSSGDHVRTW 107 (178)
Q Consensus 94 ~~id~~tkeil~~~ 107 (178)
+.+|+.||+++..|
T Consensus 51 v~VDa~tG~Il~~~ 64 (64)
T PF03413_consen 51 VYVDAYTGEILSSY 64 (64)
T ss_dssp EEEETTT--EEEEE
T ss_pred EEEECCCCeEEEeC
Confidence 34899999999876
No 55
>PF06173 DUF986: Protein of unknown function (DUF986); InterPro: IPR009328 This family consists of several bacterial putative membrane proteins of unknown function.
Probab=50.51 E-value=20 Score=27.95 Aligned_cols=45 Identities=20% Similarity=0.380 Sum_probs=30.5
Q ss_pred eecccccccccccCCceEEEEecCCCeEEEEec-CCHHHHHHHHhhh
Q psy14197 107 WRYDTVKAWNVNWEIKHMMLQLTDGNFIFECQS-ADCKVVHEFIGGY 152 (178)
Q Consensus 107 ~~~s~i~~w~~~~~~~~f~l~fg~~~~~~~~~T-~~~~~i~~Li~~Y 152 (178)
+||++|++|+.+. ++.+.++.+...--..+.. .+-|+|-.++.+|
T Consensus 103 i~Y~~Ik~mNLsE-DgILVi~L~~rrLli~v~~~dDlEki~~f~~~~ 148 (149)
T PF06173_consen 103 IPYSRIKAMNLSE-DGILVIDLEGRRLLIRVKNLDDLEKIYQFFIGY 148 (149)
T ss_pred eeHHHHHhcccCc-CcEEEEEeCCcEEEEEecCHHHHHHHHHHHhcc
Confidence 8999999999986 3567778832222222222 6788888888776
No 56
>PF08269 Cache_2: Cache domain; InterPro: IPR013163 Cache is an extracellular domain that is predicted to have a role in small-molecule recognition in a wide range of proteins, including the animal dihydropyridine-sensitive voltage-gated Ca2+ channel; alpha-2delta subunit, and various bacterial chemotaxis receptors. The name Cache comes from CAlcium channels and CHEmotaxis receptors. This domain consists of an N-terminal part with three predicted strands and an alpha-helix, and a C-terminal part with a strand dyad followed by a relatively unstructured region. The N-terminal portion of the (unpermuted) Cache domain contains three predicted strands that could form a sheet analogous to that present in the core of the PAS domain structure. Cache domains are particularly widespread in bacteria, with Vibrio cholerae. The animal calcium channel alpha-2delta subunits might have acquired a part of their extracellular domains from a bacterial source []. The Cache domain appears to have arisen from the GAF-PAS fold despite their divergent functions []. This entry is composed of the type 2 Cache domain.; PDB: 2QHK_A 4EXO_A.
Probab=48.55 E-value=50 Score=22.68 Aligned_cols=49 Identities=20% Similarity=0.089 Sum_probs=26.0
Q ss_pred HHHhccC--CCChhHHHHHHHHHHhcCCCCceeEEEEeecCCCCceEEEEcCCcEEEEeCCCC
Q psy14197 41 EAHANVK--DLGLTEAKLSYIRAWQSLPDYGLTLFVIKPMGHKKEELLGVTPSRLMRMELSSG 101 (178)
Q Consensus 41 ~~h~~~~--~ls~~eAK~~yLk~~~~lp~fG~tfF~Vk~~g~~~p~lLGI~~~gv~~id~~tk 101 (178)
..++... .+|++||+-..+..+..+--=|..||.|- +.+|+++++|...
T Consensus 25 ~~~~~~~~g~ls~eea~~~a~~~l~~~r~~~~gY~fi~------------d~~g~~l~hp~~p 75 (95)
T PF08269_consen 25 SYYAQAQAGKLSEEEAQQQAREALRALRYGGDGYFFIY------------DMDGVVLAHPSNP 75 (95)
T ss_dssp HHHHC-STT-----TTHHHHHHHHHH--SBTTB--EEE-------------TTSBEEEESS-G
T ss_pred HHHHHHhcCCccHHHHHHHHHHHHhccccCCCCeEEEE------------eCCCeEEEcCCCc
Confidence 4445543 49999999999999988766445665554 4677777777533
No 57
>PF03581 Herpes_UL33: Herpesvirus UL33-like protein; InterPro: IPR005208 This is a family of Herpesvirus proteins including UL33 P10217 from SWISSPROT,UL51 P16792 from SWISSPROT. The proteins in this family are involved in packaging viral DNA.; GO: 0019073 viral DNA genome packaging
Probab=46.66 E-value=7.9 Score=26.70 Aligned_cols=19 Identities=37% Similarity=0.578 Sum_probs=16.3
Q ss_pred ChhHHHHHHHHHHhcCCCC
Q psy14197 50 GLTEAKLSYIRAWQSLPDY 68 (178)
Q Consensus 50 s~~eAK~~yLk~~~~lp~f 68 (178)
...+||+.||..||.+..|
T Consensus 17 PTtdakLN~Ln~~q~la~f 35 (75)
T PF03581_consen 17 PTTDAKLNYLNYCQRLASF 35 (75)
T ss_pred chHHHHHHHHHHHHHHHHH
Confidence 4579999999999998765
No 58
>cd00900 PH-like Pleckstrin homology-like domain. Pleckstrin homology-like domain. This family includes the PH domain, both the Shc-like and IRS-like PTB domains, the ran-binding domain, the EVH1 domain, a domain in neurobeachin and the third domain of FERM. All of these domains have a PH fold, but lack significant sequence similarity. They are generally involved in targeting to protein to the appropriate cellular location or interacting with a binding partner. The PH domain is commonly found in eukaryotic signaling proteins. This domain family possesses multiple functions including the ability to bind inositol phosphates and to other proteins.
Probab=45.23 E-value=80 Score=20.14 Aligned_cols=64 Identities=9% Similarity=0.120 Sum_probs=43.6
Q ss_pred CceEEEEcCCcEEEEeCCCCCeEE--eeecccccccccccC----CceEEEEecC-CCeEEEEecCCHHHHH
Q psy14197 82 KEELLGVTPSRLMRMELSSGDHVR--TWRYDTVKAWNVNWE----IKHMMLQLTD-GNFIFECQSADCKVVH 146 (178)
Q Consensus 82 ~p~lLGI~~~gv~~id~~tkeil~--~~~~s~i~~w~~~~~----~~~f~l~fg~-~~~~~~~~T~~~~~i~ 146 (178)
+++.+-+...++.+++.+...... .+++..+. ...+.. ...|.+...+ ....+.+.+...+...
T Consensus 20 ~~~~~~l~~~~l~~~~~~~~~~~~~~~~~l~~~~-v~~~~~~~~~~~~F~i~~~~~~~~~~~~~~~~~~~~~ 90 (99)
T cd00900 20 KRRWFFLFDDGLLLYKSDDKKEIKPGSIPLSEIS-VEEDPDGSDDPNCFAIVTKDRGRRVFVFQADSEEEAQ 90 (99)
T ss_pred eeeEEEEECCEEEEEEcCCCCcCCCCEEEccceE-EEECCCCCCCCceEEEECCCCCcEEEEEEcCCHHHHH
Confidence 478999999999999998877765 78999888 665543 4678887775 1333344443333333
No 59
>KOG3531|consensus
Probab=42.13 E-value=26 Score=34.58 Aligned_cols=106 Identities=15% Similarity=0.255 Sum_probs=75.4
Q ss_pred ccccccccCChHHHHHhhhHHHHHHHHHHhccCCCChhHHHHHHHHHHhcCCCCceeEEEEeecCCCCceEEEEcCCcEE
Q psy14197 15 LDICAEDYVSSRYIKKLRSKLSQRILEAHANVKDLGLTEAKLSYIRAWQSLPDYGLTLFVIKPMGHKKEELLGVTPSRLM 94 (178)
Q Consensus 15 ~~~~l~~~lP~~~ik~~~~k~~~~I~~~h~~~~~ls~~eAK~~yLk~~~~lp~fG~tfF~Vk~~g~~~p~lLGI~~~gv~ 94 (178)
.+.....|+|..+- ..+.|..-|+++.|.++.|+-++-+.+.+++.+||+.+..-+-.. ..+.-|+|..-||.
T Consensus 178 ~~l~~~~~~p~q~~------~~~ki~~~h~~hig~tpaesdl~~le~ar~~~~yg~~~h~a~D~E-g~~~~lav~hmgi~ 250 (1036)
T KOG3531|consen 178 EHLAHTRYLPNQDE------LEKKIMEFHQKHIGQTPAESDFQLLEIARRLDMYGIRLHPAKDRE-GTKINLAVAHMGIL 250 (1036)
T ss_pred eeeeeeecCchHHH------HHHHHHHhhhhhhccCchhhhHHHHHHHHHHhhhccccchhhhcc-cchHHHHHHhhhhH
Confidence 34456677776622 588899999999999999999999999999999999987766321 12344566666776
Q ss_pred EEeCCCCCeEEeeecccccccccccCCceEEEEecCC
Q psy14197 95 RMELSSGDHVRTWRYDTVKAWNVNWEIKHMMLQLTDG 131 (178)
Q Consensus 95 ~id~~tkeil~~~~~s~i~~w~~~~~~~~f~l~fg~~ 131 (178)
++---|| +.|+.+++|+.-..-. +.|-+..-+.
T Consensus 251 Vfr~~tk--inTf~wAkirklsfkr--k~fLiklhp~ 283 (1036)
T KOG3531|consen 251 VFRGLTK--INTFNWAKIRKLSFKR--KRFLIKLHPD 283 (1036)
T ss_pred HHhccee--ccCCCHHHHHHHHHHH--Hhhhheeccc
Confidence 6666555 5667777777754444 5555555444
No 60
>PF03646 FlaG: FlaG protein; InterPro: IPR005186 Although these proteins are known to be important for flagellar their exact function is unknown.; PDB: 2HC5_A.
Probab=41.09 E-value=28 Score=24.86 Aligned_cols=21 Identities=10% Similarity=0.237 Sum_probs=15.9
Q ss_pred EEEEeCCCCCeEEeeeccccc
Q psy14197 93 LMRMELSSGDHVRTWRYDTVK 113 (178)
Q Consensus 93 v~~id~~tkeil~~~~~s~i~ 113 (178)
|.++|.+|+++|..+|=..+-
T Consensus 70 VkViD~~T~eVIRqIP~Ee~l 90 (107)
T PF03646_consen 70 VKVIDKETGEVIRQIPPEELL 90 (107)
T ss_dssp EEEEETTT-SEEEEE-HHHHH
T ss_pred EEEEECCCCcEEEeCCcHHHH
Confidence 788999999999999966543
No 61
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=41.01 E-value=48 Score=26.91 Aligned_cols=32 Identities=16% Similarity=0.276 Sum_probs=29.3
Q ss_pred ceEEEEcCCcEEEEeCCCCCeEEeeecccccc
Q psy14197 83 EELLGVTPSRLMRMELSSGDHVRTWRYDTVKA 114 (178)
Q Consensus 83 p~lLGI~~~gv~~id~~tkeil~~~~~s~i~~ 114 (178)
|-++|++.++|-+.+..|++.+.+.+...++-
T Consensus 239 pyli~~~~~~iEV~~~~~~~lvQ~i~~~~~~~ 270 (275)
T PF00780_consen 239 PYLIAFSSNSIEVRSLETGELVQTIPLPNIRL 270 (275)
T ss_pred CEEEEECCCEEEEEECcCCcEEEEEECCCEEE
Confidence 66999999999999999999999999888764
No 62
>PF08774 VRR_NUC: VRR-NUC domain; InterPro: IPR014883 This entry contains proteins with the VRR-NUC domain. It is associated with members of the PD-(D/E)XK nuclease superfamily, which include the type III restriction modification enzymes, for example StyLTI: (P40815 from SWISSPROT).; GO: 0016788 hydrolase activity, acting on ester bonds
Probab=40.94 E-value=1.2e+02 Score=20.98 Aligned_cols=50 Identities=14% Similarity=0.254 Sum_probs=32.1
Q ss_pred CChhHHHHHHHHHHhcCCCCceeEEEEeecCC------------------CCceEEEEcCCc----EEEEeCCCCC
Q psy14197 49 LGLTEAKLSYIRAWQSLPDYGLTLFVIKPMGH------------------KKEELLGVTPSR----LMRMELSSGD 102 (178)
Q Consensus 49 ls~~eAK~~yLk~~~~lp~fG~tfF~Vk~~g~------------------~~p~lLGI~~~g----v~~id~~tke 102 (178)
|+|..+...+.+.+...+ ..+.+..-+. .-|.|+.+...| +.+++.|+..
T Consensus 1 m~E~~iq~~i~~~~~~~~----~~~~~~n~~~~~~~~~~~~~~~~~g~~~G~PDl~~~~~~~~~~~~~~iEvK~p~ 72 (100)
T PF08774_consen 1 MRESDIQVAIVRWLRKHG----IVFHVKNWGKFRGPKALAKIKRRRGVRSGFPDLILWRPRGKRDIFLFIEVKGPG 72 (100)
T ss_pred CCHHHHHHHHHHHHHHhC----CeEEEEeCCcccCHHHHHHHHHhcCCCCCCCcEEEEecCCCccEEEEEEEcCCC
Confidence 567777777777776444 4444443222 138888888776 7888887763
No 63
>KOG3557|consensus
Probab=37.33 E-value=41 Score=32.24 Aligned_cols=76 Identities=14% Similarity=0.279 Sum_probs=53.8
Q ss_pred ceEEEEcCCcEEEEeCCCCCeEEeeeccccccccccc---CC-ceEEEEecCC------CeEEEEecCCHHHHHHHHhhh
Q psy14197 83 EELLGVTPSRLMRMELSSGDHVRTWRYDTVKAWNVNW---EI-KHMMLQLTDG------NFIFECQSADCKVVHEFIGGY 152 (178)
Q Consensus 83 p~lLGI~~~gv~~id~~tkeil~~~~~s~i~~w~~~~---~~-~~f~l~fg~~------~~~~~~~T~~~~~i~~Li~~Y 152 (178)
..+|-|+.+-|.++|.+||+.+..+|+..|.+-...- .. ..+.+...+. ...|-|+...++.|.+-|.+-
T Consensus 87 ~miLqv~d~~v~llD~Es~~ele~fpl~~iq~~~a~~~~~~y~siL~lv~qep~~~r~d~h~Fq~~ev~Aell~edi~~a 166 (721)
T KOG3557|consen 87 DMILQVDDQWVLLLDIETKEELESFPLSTIQRPQAVLNMCSYNSILSLVVQEPGRSRPDVHIFQCQEVGAELLREDIQGA 166 (721)
T ss_pred cceeEeccCceeeechhhhHHHhhcCcchhhhhhhhcccccccchhheeeccCCCCCCceeEEeeccchhHHHHHhHHHH
Confidence 5699999999999999999999999999999866432 01 1122222222 367888888888777766665
Q ss_pred hhHhhh
Q psy14197 153 IFLSMR 158 (178)
Q Consensus 153 i~l~~~ 158 (178)
+.-.+.
T Consensus 167 l~~~~~ 172 (721)
T KOG3557|consen 167 LSNYRS 172 (721)
T ss_pred Hhhhhc
Confidence 554443
No 64
>PF11523 DUF3223: Protein of unknown function (DUF3223); InterPro: IPR021602 This family of proteins has no known function. ; PDB: 2K0M_A.
Probab=35.95 E-value=1.4e+02 Score=20.26 Aligned_cols=57 Identities=14% Similarity=0.149 Sum_probs=38.4
Q ss_pred HHHHHHHhccCCCChhHHHHHHHHHHhcCCCC------ceeEEEEeecCCC--CceEEEEcCCcE
Q psy14197 37 QRILEAHANVKDLGLTEAKLSYIRAWQSLPDY------GLTLFVIKPMGHK--KEELLGVTPSRL 93 (178)
Q Consensus 37 ~~I~~~h~~~~~ls~~eAK~~yLk~~~~lp~f------G~tfF~Vk~~g~~--~p~lLGI~~~gv 93 (178)
+.|+..|.....+++.+++.--..+...-|.+ |+..|.|.....- ..|+.-|-.+|-
T Consensus 2 k~iL~~y~~g~~l~~~d~~~~l~~ll~~HP~~~~KiG~Gi~~i~V~~hp~~~~srCF~vvR~DGs 66 (76)
T PF11523_consen 2 KRILHRYPDGERLSEEDEKSVLEALLKYHPEAEEKIGCGIDHIMVRKHPEFKDSRCFFVVRTDGS 66 (76)
T ss_dssp HHHHHHS-TTEE--HHH-HHHHHHHHHTSTTHHHHHTT-EEEEEEEESSSS---EEEEEEETTS-
T ss_pred hhHHhhCCCcCCcCHHHHHHHHHHHHHhCCcHHHhhcCCeeeEEEeecCCCCcceEEEEEEeCCC
Confidence 56788888888899888888888888888875 8999999875322 467776666653
No 65
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=35.40 E-value=69 Score=29.60 Aligned_cols=47 Identities=15% Similarity=0.319 Sum_probs=35.7
Q ss_pred eeEEEEeecCCCCceEEEEcCCcEEE-EeCCCCCeEEeeecccccccc
Q psy14197 70 LTLFVIKPMGHKKEELLGVTPSRLMR-MELSSGDHVRTWRYDTVKAWN 116 (178)
Q Consensus 70 ~tfF~Vk~~g~~~p~lLGI~~~gv~~-id~~tkeil~~~~~s~i~~w~ 116 (178)
...+.+...|.+.|.++...|+|.++ +|.+|++.+..+++..-.+|.
T Consensus 303 p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~ 350 (527)
T TIGR03075 303 MILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWA 350 (527)
T ss_pred cEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccccccCCcccc
Confidence 35555544455557899999999765 599999999888888777884
No 66
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=32.74 E-value=63 Score=29.36 Aligned_cols=44 Identities=23% Similarity=0.208 Sum_probs=28.4
Q ss_pred eEEEEcCCc-EEEEeCCCCCeEEeeecccccccccccCCceEEEE
Q psy14197 84 ELLGVTPSR-LMRMELSSGDHVRTWRYDTVKAWNVNWEIKHMMLQ 127 (178)
Q Consensus 84 ~lLGI~~~g-v~~id~~tkeil~~~~~s~i~~w~~~~~~~~f~l~ 127 (178)
.+||+..++ |.++|..++.++.+...+.+++---+.+.+.+.|-
T Consensus 118 ~LL~~~~~~~i~~yDw~~~~~i~~i~v~~vk~V~Ws~~g~~val~ 162 (443)
T PF04053_consen 118 NLLGVKSSDFICFYDWETGKLIRRIDVSAVKYVIWSDDGELVALV 162 (443)
T ss_dssp SSEEEEETTEEEEE-TTT--EEEEESS-E-EEEEE-TTSSEEEEE
T ss_pred cEEEEECCCCEEEEEhhHcceeeEEecCCCcEEEEECCCCEEEEE
Confidence 488999999 99999999999999999987753322222455554
No 67
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=31.88 E-value=39 Score=28.76 Aligned_cols=26 Identities=15% Similarity=0.268 Sum_probs=21.8
Q ss_pred CCcEEEEeCCCCCeEEeeeccccccc
Q psy14197 90 PSRLMRMELSSGDHVRTWRYDTVKAW 115 (178)
Q Consensus 90 ~~gv~~id~~tkeil~~~~~s~i~~w 115 (178)
.+.|++|||+||++...+.++.+..-
T Consensus 194 td~I~~Idp~tG~V~~~iDls~L~~~ 219 (264)
T PF05096_consen 194 TDRIVRIDPETGKVVGWIDLSGLRPE 219 (264)
T ss_dssp SSEEEEEETTT-BEEEEEE-HHHHHH
T ss_pred CCeEEEEeCCCCeEEEEEEhhHhhhc
Confidence 57899999999999999999999864
No 68
>PF08378 NERD: Nuclease-related domain; InterPro: IPR011528 The nuclease-related domain (NERD) is found in a broad range of bacterial, as well as single archaeal and plant proteins. Most NERD-containing proteins have a single domain, sometimes with additional (predicted) transmembrane helices. In a few instances, proteins containing NERD domains have additional domains (mostly involved in DNA processing), such as the HRDC, the UvrD/REP helicase, the DNA-binding C4 zinc finger, or the serine/threonine and tyrosine protein kinases. In all cases in which a NERD domain is present in multidomain proteins, it is found at the N terminus. The NERD domain is predicted to function in DNA processing, and may have a nuclease function [].
Probab=31.10 E-value=1.7e+02 Score=20.32 Aligned_cols=47 Identities=19% Similarity=0.297 Sum_probs=30.1
Q ss_pred HHHHHHHHH-hcCCCCce-eEEEEeec---CCC-CceEEEEcCCcEEEEeCCC
Q psy14197 54 AKLSYIRAW-QSLPDYGL-TLFVIKPM---GHK-KEELLGVTPSRLMRMELSS 100 (178)
Q Consensus 54 AK~~yLk~~-~~lp~fG~-tfF~Vk~~---g~~-~p~lLGI~~~gv~~id~~t 100 (178)
+.....+.+ ..++.-+. .|..+... +.. ...+|-|++.||++++.|+
T Consensus 5 gE~~~~~~L~~~l~~~~~~v~~~i~~~~~~~~~~eiD~lvi~~~gi~viE~K~ 57 (115)
T PF08378_consen 5 GEQRVAERLEKHLPDDEYHVFHNIRLPDPQGGTREIDHLVITPKGIFVIEVKN 57 (115)
T ss_pred HHHHHHHHHHhhCCcCcEEEEeceEEeccCCCCceeEEEEEeCCEEEEEEEec
Confidence 444455555 56777753 34444432 112 3579999999999999985
No 69
>PHA03229 DNA packaging protein UL33; Provisional
Probab=30.74 E-value=18 Score=27.53 Aligned_cols=54 Identities=19% Similarity=0.207 Sum_probs=35.6
Q ss_pred ccccccccCChHHHHHhhhH-HHHHHH-HH------Hhc---cCC---------CChhHHHHHHHHHHhcCCCC
Q psy14197 15 LDICAEDYVSSRYIKKLRSK-LSQRIL-EA------HAN---VKD---------LGLTEAKLSYIRAWQSLPDY 68 (178)
Q Consensus 15 ~~~~l~~~lP~~~ik~~~~k-~~~~I~-~~------h~~---~~~---------ls~~eAK~~yLk~~~~lp~f 68 (178)
+-..|+|.+|..-+...+.. ++.+-. .. ... +.. +...+||+.||..||+|..|
T Consensus 7 ~~~~l~~~Ip~~~L~~~~l~~L~~~Y~~~~~~~~~~~~~~iwFE~llP~eiE~i~PTTDaKLNyLs~tqrLAsf 80 (132)
T PHA03229 7 RPRTLREAIPDCALLSRSLESLEARYVSRDDADGGAGDAAVWFEDLTPVELEVVFPTTDAKLNYLSRTQRLASL 80 (132)
T ss_pred CcchHHHhCCHHHhhhCCHHHHHHHHccCccccccccceeeeecccCchHHHhhccchHHHHHHHHHHHHHHHH
Confidence 34678999999988877755 443321 11 010 123 33478999999999999876
No 70
>PF14328 DUF4385: Domain of unknown function (DUF4385)
Probab=30.49 E-value=32 Score=26.59 Aligned_cols=34 Identities=15% Similarity=0.287 Sum_probs=28.9
Q ss_pred EEEEcCCcEEEEeCCCCCeEEeeecccccccccc
Q psy14197 85 LLGVTPSRLMRMELSSGDHVRTWRYDTVKAWNVN 118 (178)
Q Consensus 85 lLGI~~~gv~~id~~tkeil~~~~~s~i~~w~~~ 118 (178)
-+|-.-+||+++.|=..+++..|+|.....=.-+
T Consensus 20 riGrGEQGVLlvePYKseilP~WrFktp~iA~~S 53 (145)
T PF14328_consen 20 RIGRGEQGVLLVEPYKSEILPHWRFKTPEIARES 53 (145)
T ss_pred eecCCcceeEEEeccccccccccccCCHHHHHHH
Confidence 6899999999999999999999999876653333
No 71
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=29.34 E-value=56 Score=27.35 Aligned_cols=27 Identities=19% Similarity=0.145 Sum_probs=24.0
Q ss_pred CCcEEEEeCCCCCeEEeeecccccccc
Q psy14197 90 PSRLMRMELSSGDHVRTWRYDTVKAWN 116 (178)
Q Consensus 90 ~~gv~~id~~tkeil~~~~~s~i~~w~ 116 (178)
-+.|+++||+||++++.+.+|.+.+-.
T Consensus 195 t~~I~rI~p~sGrV~~widlS~L~~~~ 221 (262)
T COG3823 195 TTRIARIDPDSGRVVAWIDLSGLLKEL 221 (262)
T ss_pred ecceEEEcCCCCcEEEEEEccCCchhc
Confidence 467999999999999999999998754
No 72
>PF08000 bPH_1: Bacterial PH domain; InterPro: IPR012544 This family contains many bacterial hypothetical proteins.; PDB: 3DCX_E 3HSA_C 3B77_D.
Probab=28.75 E-value=2.5e+02 Score=20.97 Aligned_cols=70 Identities=13% Similarity=0.278 Sum_probs=43.0
Q ss_pred eEEEEcCCcEEEEeC----CCCCeEEeeecccccccccccC-----CceEEEEecCCCe--EEEEe-cCCHHHHHHHHhh
Q psy14197 84 ELLGVTPSRLMRMEL----SSGDHVRTWRYDTVKAWNVNWE-----IKHMMLQLTDGNF--IFECQ-SADCKVVHEFIGG 151 (178)
Q Consensus 84 ~lLGI~~~gv~~id~----~tkeil~~~~~s~i~~w~~~~~-----~~~f~l~fg~~~~--~~~~~-T~~~~~i~~Li~~ 151 (178)
..+.++-.+++++|. -.|..+.++||+.|.+|++-.. +..+.|-++.... .+.+. ..+-..+...|+.
T Consensus 42 D~~vFTnkRlI~vD~QG~TGkK~~~~siPY~~I~~~siETAG~~DlD~Elki~i~~~~~~i~~~f~k~~di~~i~k~L~~ 121 (124)
T PF08000_consen 42 DEIVFTNKRLILVDKQGITGKKVEYKSIPYSSITHFSIETAGTFDLDSELKIWISGQGFPIEFEFKKKTDIYEIYKALAE 121 (124)
T ss_dssp EEEEEESSEEEEEEEESSSSSEEEEEEEEGGGEEEEEEEECSSTTSEEEEEEEETTESSEEEEEEGTTSHHHHHHHHHHH
T ss_pred eeEEEecChheEEecccCccceEEEEEEehhhccEEEEEeCCcccCcccEEEEECCCcEEEEEecCCCCCHHHHHHHHHH
Confidence 477888888999984 3346777999999999986541 2235555554432 22121 2345555566665
Q ss_pred hh
Q psy14197 152 YI 153 (178)
Q Consensus 152 Yi 153 (178)
|+
T Consensus 122 ~v 123 (124)
T PF08000_consen 122 YV 123 (124)
T ss_dssp HH
T ss_pred Hh
Confidence 54
No 73
>PHA03236 DNA packaging protein UL33; Provisional
Probab=28.31 E-value=21 Score=27.02 Aligned_cols=53 Identities=17% Similarity=0.229 Sum_probs=35.9
Q ss_pred cccccccCChHHHHHhhhH-HHHHHHH----HHhc-cCC---------CChhHHHHHHHHHHhcCCCC
Q psy14197 16 DICAEDYVSSRYIKKLRSK-LSQRILE----AHAN-VKD---------LGLTEAKLSYIRAWQSLPDY 68 (178)
Q Consensus 16 ~~~l~~~lP~~~ik~~~~k-~~~~I~~----~h~~-~~~---------ls~~eAK~~yLk~~~~lp~f 68 (178)
-..++|.+|..-+...+.. +..+-.. .+.- +.. +...+||+.||..||+|..|
T Consensus 7 ~~rl~d~Ip~~~l~~~~ld~L~~~Y~~~~~~~~~iwFE~llP~eie~i~PTTDaKLNyLs~tqrLasf 74 (127)
T PHA03236 7 TVRLRDAIPNEDLQSLDLDALEEKYLIDDDFQYRIWFEYLIPDEIEAIFPTTDSKLNYLSFTRRLASV 74 (127)
T ss_pred cchHHHhCCHHHhhhCCHHHHHHHhccCCccceeeeecccCchHHHhhccchHHHHHHHHHHHHHHHH
Confidence 4678999999988877765 4444321 1110 223 34478999999999999876
No 74
>PF08567 TFIIH_BTF_p62_N: TFIIH p62 subunit, N-terminal domain; InterPro: IPR013876 The N-terminal region of the TFIIH basal transcription factor complex p62 subunit (BTF2-p62) forms an interaction with the 3' endonuclease XPG, which is essential for activity. The 3' endonuclease XPG is a major component of the nucleotide excision repair machinery. The structure of the N-terminal region reveals that it adopts a pleckstrin homology (PH) fold [, ]. ; PDB: 1Y5O_A 2LOX_A 2GS0_A 2L2I_A 2K2U_A 1PFJ_A 2RNR_B.
Probab=27.26 E-value=1.9e+02 Score=19.67 Aligned_cols=49 Identities=22% Similarity=0.232 Sum_probs=35.0
Q ss_pred CCceEEEEcCCc--EEEEeCCCCCe-EEeeecccccccccccC-CceEEEEec
Q psy14197 81 KKEELLGVTPSR--LMRMELSSGDH-VRTWRYDTVKAWNVNWE-IKHMMLQLT 129 (178)
Q Consensus 81 ~~p~lLGI~~~g--v~~id~~tkei-l~~~~~s~i~~w~~~~~-~~~f~l~fg 129 (178)
+++..|-|+.++ +........+. -.+.+|++|++-.++++ ...+.|.+.
T Consensus 11 K~~G~L~l~~d~~~~~W~~~~~~~~~~v~i~~~~I~~lq~Sp~~s~Kv~Lki~ 63 (79)
T PF08567_consen 11 KKDGTLTLTEDRKPLEWTPKASDGPSTVSIPLNDIKNLQQSPEGSPKVMLKIV 63 (79)
T ss_dssp TEEEEEEEETTCSSEEEEECCSSSSSEEEEETTTEEEEEE--TTSSTEEEEEE
T ss_pred cCCcEEEEecCCceEEEeecCCCCCceEEEEHHHhhhhccCCCCCcceEEEEE
Confidence 457899999999 88887644444 58999999999998873 334555543
No 75
>COG4811 Predicted membrane protein [Function unknown]
Probab=27.14 E-value=1.1e+02 Score=23.59 Aligned_cols=46 Identities=17% Similarity=0.304 Sum_probs=31.2
Q ss_pred eeecccccccccccCCceEEEEecCCCeEEEEec-CCHHHHHHHHhhh
Q psy14197 106 TWRYDTVKAWNVNWEIKHMMLQLTDGNFIFECQS-ADCKVVHEFIGGY 152 (178)
Q Consensus 106 ~~~~s~i~~w~~~~~~~~f~l~fg~~~~~~~~~T-~~~~~i~~Li~~Y 152 (178)
=++|++|++.+.+. ++.+.|+..+..--..+.+ .+.|+|-.+..+|
T Consensus 105 ~~~YarI~~mNLsE-dgvLVi~l~~rRLli~~r~~~DlEki~~~f~~~ 151 (152)
T COG4811 105 FIEYARIKAMNLSE-DGVLVIQLEQRRLLIRVRNIDDLEKIYKLFVSY 151 (152)
T ss_pred EEehhhhhhcCcCc-CcEEEEEeccceeEEEecchhhHHHHHHHhccc
Confidence 46899999988875 4667888776421112233 6788888887776
No 76
>KOG0164|consensus
Probab=26.82 E-value=1.2e+02 Score=29.89 Aligned_cols=102 Identities=16% Similarity=0.193 Sum_probs=64.6
Q ss_pred HHhcCCCCceeEEEEee---cCCCC--ceEEEEcCCcEEEEeCCCCCeEE-eeecccccccccccCCce-EEEEecCC-C
Q psy14197 61 AWQSLPDYGLTLFVIKP---MGHKK--EELLGVTPSRLMRMELSSGDHVR-TWRYDTVKAWNVNWEIKH-MMLQLTDG-N 132 (178)
Q Consensus 61 ~~~~lp~fG~tfF~Vk~---~g~~~--p~lLGI~~~gv~~id~~tkeil~-~~~~s~i~~w~~~~~~~~-f~l~fg~~-~ 132 (178)
..+.-.+||-..|.+-. ...+| .+.|=++...|..+|++-..+++ +.|+..+...+++++.+. |.+-.++. +
T Consensus 844 ~l~~~e~fg~Vlfs~~V~K~NrfnK~~~R~lllTd~~v~kld~~K~k~mK~~I~l~nltgiSVss~~D~LfvlH~~~~~D 923 (1001)
T KOG0164|consen 844 QLKGSETFGPVLFSSHVKKVNRFNKPRSRALLLTDRHVYKLDPKKQKVMKQTIPLANLTGISVSSGSDQLFVLHVSDNKD 923 (1001)
T ss_pred HhhccCCccceeehhhHHHhcccCCccceeEEeecCeEEEecchHhhHhhcccchhhccceeeecCCCceEEEEecCCcc
Confidence 33444578888886532 22224 47889999999999997655666 999999999999886665 55555554 3
Q ss_pred eEEEEec-----CCHHHHHHHHhhhhhHhhhccccc
Q psy14197 133 FIFECQS-----ADCKVVHEFIGGYIFLSMRSKDAN 163 (178)
Q Consensus 133 ~~~~~~T-----~~~~~i~~Li~~Yi~l~~~~~~~~ 163 (178)
...+... --++.+.-++.+|-+. +|+..-+
T Consensus 924 lv~~~~~~~~e~rVgElvg~l~~~~~~~-~r~l~V~ 958 (1001)
T KOG0164|consen 924 LVVCLDSVLQEDRVGELVGKLAAHYNDE-GRSLNVN 958 (1001)
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHhhh-cceeeEE
Confidence 2222122 1244455556677776 5544443
No 77
>PRK10941 hypothetical protein; Provisional
Probab=26.65 E-value=1e+02 Score=26.15 Aligned_cols=52 Identities=12% Similarity=0.181 Sum_probs=33.7
Q ss_pred HHHHHHHh--cCCCCceeEEEEeecCCCCceEEEEc-CCc-EEEEeCCCCCeEEeeecccccccccc
Q psy14197 56 LSYIRAWQ--SLPDYGLTLFVIKPMGHKKEELLGVT-PSR-LMRMELSSGDHVRTWRYDTVKAWNVN 118 (178)
Q Consensus 56 ~~yLk~~~--~lp~fG~tfF~Vk~~g~~~p~lLGI~-~~g-v~~id~~tkeil~~~~~s~i~~w~~~ 118 (178)
+-|+.+++ .+|.+|+.| |.--+|.+. .+| +.++||-+|+.+. -.+++.|--+
T Consensus 103 il~l~iA~~lglp~~gV~f--------Pghfllr~~~~d~~~~~IDPf~G~~L~---~~~l~~~L~~ 158 (269)
T PRK10941 103 AILLWIANRLDLPLMPVIF--------PTQLILRADWLDGEMWLINPFNGETLD---EHTLEVWLKG 158 (269)
T ss_pred HHHHHHHHHcCCCeeeeec--------CchheeeeecCCCceEEEeCCCCCCCC---HHHHHHHHHh
Confidence 45666664 579999987 111255554 333 7889999998764 4666666643
No 78
>PRK02913 hypothetical protein; Provisional
Probab=26.27 E-value=98 Score=24.11 Aligned_cols=46 Identities=17% Similarity=0.314 Sum_probs=29.5
Q ss_pred eeecccccccccccCCceEEEEecCCCeEEEEec-CCHHHHHHHHhhh
Q psy14197 106 TWRYDTVKAWNVNWEIKHMMLQLTDGNFIFECQS-ADCKVVHEFIGGY 152 (178)
Q Consensus 106 ~~~~s~i~~w~~~~~~~~f~l~fg~~~~~~~~~T-~~~~~i~~Li~~Y 152 (178)
=++|+.|++++.+. +..+.++..+..--..+.. .+.++|-++..+|
T Consensus 103 fi~Y~~Ik~mNLSE-DgiLVi~Le~rrLli~v~~~dDLekiy~ff~~~ 149 (150)
T PRK02913 103 FIEYSRIKAMNLSE-DGILVIDLEQRRLLIRVRNLDDLEKIYKFFIEY 149 (150)
T ss_pred eeehHHhhhccccc-CCEEEEEecCcEEEEEccChhhHHHHHHHHhcC
Confidence 37889999988874 4667888776322222222 5677777776665
No 79
>PF06115 DUF956: Domain of unknown function (DUF956); InterPro: IPR010360 This is a family of bacterial sequences with undetermined function.
Probab=24.92 E-value=2.4e+02 Score=21.14 Aligned_cols=65 Identities=14% Similarity=0.046 Sum_probs=47.3
Q ss_pred cCCcEEEEeCCCCCeEEeeecccccccccccC-----CceEEEEecCCCeEEEEecCCHHHHHHHHhhhhh
Q psy14197 89 TPSRLMRMELSSGDHVRTWRYDTVKAWNVNWE-----IKHMMLQLTDGNFIFECQSADCKVVHEFIGGYIF 154 (178)
Q Consensus 89 ~~~gv~~id~~tkeil~~~~~s~i~~w~~~~~-----~~~f~l~fg~~~~~~~~~T~~~~~i~~Li~~Yi~ 154 (178)
.-.|+-+++.++-+--...|+++|..-.++-- .+-|.|.-. .+..|.+.+.+.+++-..+..|+.
T Consensus 30 GDkaFEFyn~~n~~dyIQIPW~eI~~V~a~V~fkgk~I~RF~I~Tk-~~G~f~Fsskd~k~~Lk~~r~yv~ 99 (118)
T PF06115_consen 30 GDKAFEFYNDRNVEDYIQIPWEEIDYVIASVSFKGKWIPRFAIFTK-KNGKFTFSSKDSKKVLKAIRKYVG 99 (118)
T ss_pred cccceEeecCCChhhcEEeChhheeEEEEEEEECCCEEeeEEEEEC-CCCEEEEEECChHHHHHHHHHhcC
Confidence 35567778888888888999999998665531 111444332 346788899999999999998875
No 80
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=24.43 E-value=1.2e+02 Score=17.20 Aligned_cols=23 Identities=22% Similarity=0.534 Sum_probs=15.3
Q ss_pred EEEEcCC-cEEEEeCCCCCeEEeee
Q psy14197 85 LLGVTPS-RLMRMELSSGDHVRTWR 108 (178)
Q Consensus 85 lLGI~~~-gv~~id~~tkeil~~~~ 108 (178)
+++ +.+ .|.=+|.+||+++=.+.
T Consensus 4 ~~~-~~~g~l~AlD~~TG~~~W~~~ 27 (38)
T PF01011_consen 4 YVG-TPDGYLYALDAKTGKVLWKFQ 27 (38)
T ss_dssp EEE-TTTSEEEEEETTTTSEEEEEE
T ss_pred EEe-CCCCEEEEEECCCCCEEEeee
Confidence 345 444 45667999999994433
No 81
>PF06241 DUF1012: Protein of unknown function (DUF1012); InterPro: IPR010420 This entry represents the CASTOR/POLLUX/SYM8 family of ion channels, which are found in plants. They have been implicated in modulating the nuclear membrane envelope potential [].
Probab=24.08 E-value=1.7e+02 Score=23.78 Aligned_cols=49 Identities=12% Similarity=0.190 Sum_probs=37.8
Q ss_pred HHHHHhcCCCCceeEEEEee----cCC-------CCc--eEEEEcCCcEEEEeCCCCCeEEe
Q psy14197 58 YIRAWQSLPDYGLTLFVIKP----MGH-------KKE--ELLGVTPSRLMRMELSSGDHVRT 106 (178)
Q Consensus 58 yLk~~~~lp~fG~tfF~Vk~----~g~-------~~p--~lLGI~~~gv~~id~~tkeil~~ 106 (178)
-+++|+++=.|+-+-|.++. .|- ..| ..-||-.+|=+.++|+...++.+
T Consensus 79 L~~Iy~~iL~~~k~vf~l~~~P~L~Gm~y~dvr~~Fpdav~CGv~r~GkI~fhP~Dd~vL~e 140 (206)
T PF06241_consen 79 LAQIYEDILGFEKNVFNLKRWPQLDGMKYRDVRRSFPDAVVCGVKRDGKIVFHPDDDYVLRE 140 (206)
T ss_pred HHHHHHHHhCCCCcEEEEecCcccCCcCHHHHHhcCCcceeeeeeeCCeeEECCCCCceeec
Confidence 36889999999999998874 121 123 46788999999999999888753
No 82
>KOG0162|consensus
Probab=22.80 E-value=48 Score=32.55 Aligned_cols=56 Identities=30% Similarity=0.360 Sum_probs=37.8
Q ss_pred ccccccccccCCceEEEEecCCCeEEEEecCCHHHHHHHHhhhhhHhhhccccccccchh---hhhhhcCC
Q psy14197 110 DTVKAWNVNWEIKHMMLQLTDGNFIFECQSADCKVVHEFIGGYIFLSMRSKDANQTLNED---LFHKLTGG 177 (178)
Q Consensus 110 s~i~~w~~~~~~~~f~l~fg~~~~~~~~~T~~~~~i~~Li~~Yi~l~~~~~~~~q~~~~~---~f~~~~~~ 177 (178)
..++||+++.-.++|.|.|...+ + ..|-+|..+ +..++|-.+|--+|. +|+.||-|
T Consensus 159 kTvRNnNSSR~GKY~Ei~Fs~gg-----e-P~ggkisNf------LLEKsRVV~q~~neRnFHIfYQ~~kg 217 (1106)
T KOG0162|consen 159 KTVRNNNSSRFGKYLEIQFSRGG-----E-PDGGKISNF------LLEKSRVVMQNENERNFHIFYQLTKG 217 (1106)
T ss_pred hhhccCCcccccceEEEEecCCC-----C-cCcchhhHH------HHhhhhhhhccCCccceeeehhhhcC
Confidence 35899999998999999998763 1 233344433 455666677776665 45577755
No 83
>PRK07738 flagellar protein FlaG; Provisional
Probab=21.68 E-value=74 Score=23.72 Aligned_cols=23 Identities=4% Similarity=0.043 Sum_probs=18.8
Q ss_pred cEEEEeCCCCCeEEeeecccccc
Q psy14197 92 RLMRMELSSGDHVRTWRYDTVKA 114 (178)
Q Consensus 92 gv~~id~~tkeil~~~~~s~i~~ 114 (178)
-|.++|.+|+++|..+|=.++-.
T Consensus 78 vVkVvD~~T~EVIRQIPpEe~L~ 100 (117)
T PRK07738 78 YVQVVDERTNEVIREIPPKKLLD 100 (117)
T ss_pred EEEEEECCCCeeeeeCCCHHHHH
Confidence 37889999999999999766543
No 84
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=20.93 E-value=1.4e+02 Score=16.59 Aligned_cols=20 Identities=5% Similarity=0.104 Sum_probs=15.8
Q ss_pred CCcEEEEeCCCCCeEEeeec
Q psy14197 90 PSRLMRMELSSGDHVRTWRY 109 (178)
Q Consensus 90 ~~gv~~id~~tkeil~~~~~ 109 (178)
.+.|..+|++++.++.+++.
T Consensus 13 ~~~v~~id~~~~~~~~~i~v 32 (42)
T TIGR02276 13 SNTVSVIDTATNKVIATIPV 32 (42)
T ss_pred CCEEEEEECCCCeEEEEEEC
Confidence 46788899999988877654
No 85
>PF12645 HTH_16: Helix-turn-helix domain; InterPro: IPR024760 This domain appears to be a helix-turn-helix domain, suggesting a transcriptional regulatory protein. Some proteins with this domain are annotated as conjugative transposon proteins.
Probab=20.85 E-value=1.6e+02 Score=19.39 Aligned_cols=36 Identities=19% Similarity=0.230 Sum_probs=27.2
Q ss_pred CCHHHHHHHHhhhhhHhh---------hccccccccchhhhhhhc
Q psy14197 140 ADCKVVHEFIGGYIFLSM---------RSKDANQTLNEDLFHKLT 175 (178)
Q Consensus 140 ~~~~~i~~Li~~Yi~l~~---------~~~~~~q~~~~~~f~~~~ 175 (178)
-+.+.|.+++..|--+|. .....+-..||+++..|.
T Consensus 10 GD~~A~~~IL~~y~~yI~kls~r~~~d~~g~~~~~vDedl~q~l~ 54 (65)
T PF12645_consen 10 GDPEAMEEILKHYEPYISKLSTRTLYDEYGNVYGYVDEDLKQRLE 54 (65)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhhcccccCCcCceeCHHHHHHHH
Confidence 466778889988887777 455567789999987764
No 86
>PF09308 LuxQ-periplasm: LuxQ, periplasmic; InterPro: IPR015387 This entry represents the periplasmic sensor domain of the prokaryotic protein LuxQ, that assumes a structure consisting of two tandem Per/ARNT/Simple-minded (PAS) folds []. ; GO: 0004673 protein histidine kinase activity, 0016791 phosphatase activity; PDB: 2HJ9_C 2HJE_A 1ZHH_B 3C30_A 3C38_A.
Probab=20.51 E-value=2.5e+02 Score=23.59 Aligned_cols=67 Identities=10% Similarity=0.102 Sum_probs=36.6
Q ss_pred ceEEEEcCCcEEEEeCCCCCeEEeee--------cccccccccccCCceEEEEecCCCeEEEEecCCHHHHHHHHhh
Q psy14197 83 EELLGVTPSRLMRMELSSGDHVRTWR--------YDTVKAWNVNWEIKHMMLQLTDGNFIFECQSADCKVVHEFIGG 151 (178)
Q Consensus 83 p~lLGI~~~gv~~id~~tkeil~~~~--------~s~i~~w~~~~~~~~f~l~fg~~~~~~~~~T~~~~~i~~Li~~ 151 (178)
.+.+-|.+ +-++|++|||++.-.= |+=+.+-.-+.+...+.|..|+.=..-++...+.+++.+.+..
T Consensus 124 ~~~lLvRR--~pIi~~~tGEVlG~Ly~gvVLNnNfsLve~l~~~sn~d~vvL~~~~~viAss~k~~e~y~~~~~L~~ 198 (238)
T PF09308_consen 124 NRYLLVRR--TPIIDPKTGEVLGYLYIGVVLNNNFSLVEALRDGSNSDNVVLAVGSKVIASSIKGDEIYQVKDVLEQ 198 (238)
T ss_dssp EEEEEEEE--EEEE-TTTSBEEEEEEEEEE-TT-HHHHHHHHHHCT-SEEEEECTTCEEEE---S-SSS-HHHHHT-
T ss_pred ceEEEEee--cceeeCCCCeEEEEEEEEEEEcCcHHHHHHHHhhcCcceEEEEeCCEEEeeecCCCchhHHHHHHHh
Confidence 45666665 7778999999986542 2222332222344668888887744445666777788777733
Done!