RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14197
(178 letters)
>4f7g_A Talin-1; alpha-helix bundle, integrin activation, cell adhesion;
2.05A {Mus musculus}
Length = 222
Score = 117 bits (295), Expect = 2e-33
Identities = 37/148 (25%), Positives = 75/148 (50%), Gaps = 10/148 (6%)
Query: 20 EDYVSSRYIKKLRSKLSQRILEAHANVKDLGLTEAKLSYIRAWQSLPDYGLTLFVIKPMG 79
+D++ Y+K+ K ++I +AH N + EAK+ Y++ +SL YG++ F++K
Sbjct: 80 KDFLPKEYVKQ---KGERKIFQAHKNCGQMSEIEAKVRYVKLARSLKTYGVSFFLVKEKM 136
Query: 80 HKK----EELLGVTPSRLMRMELSSGDHVRTWRYDTVKAWNVNWEIKHMMLQLTD-GNFI 134
K LLG+T +MR++ + + ++ W +K W + K L D +
Sbjct: 137 KGKNKLVPRLLGITKECVMRVDEKTKEVIQEWSLTNIKRWAASP--KSFTLDFGDYQDGY 194
Query: 135 FECQSADCKVVHEFIGGYIFLSMRSKDA 162
+ Q+ + + + + I GYI + ++ K +
Sbjct: 195 YSVQTTEGEQIAQLIAGYIDIILKKKKS 222
>1mix_A Talin; focal adhesion, integrin binding, FERM domain, cytoskeleton,
structural protein; 1.75A {Gallus gallus} SCOP: a.11.2.1
b.55.1.5 PDB: 1miz_B 1mk7_B 1mk9_B 1y19_B 3g9w_A 2hrj_A
2g35_A* 2k00_A 2h7d_A* 2h7e_A* 2kgx_B
Length = 206
Score = 107 bits (269), Expect = 6e-30
Identities = 37/146 (25%), Positives = 73/146 (50%), Gaps = 10/146 (6%)
Query: 17 ICAEDYVSSRYIKKLRSKLSQRILEAHANVKDLGLTEAKLSYIRAWQSLPDYGLTLFVIK 76
+ +D++ YIK+ K ++I AH N ++ EAK+ Y++ +SL YG++ F++K
Sbjct: 66 LELKDFLPKEYIKQ---KGERKIFMAHKNCGNMSEIEAKVRYVKLARSLKTYGVSFFLVK 122
Query: 77 PMGHKK----EELLGVTPSRLMRMELSSGDHVRTWRYDTVKAWNVNWEIKHMMLQLTD-G 131
K LLG+T +MR++ + + ++ W +K W + K L D
Sbjct: 123 EKMKGKNKLVPRLLGITKECVMRVDEKTKEVIQEWSLTNIKRWAASP--KSFTLDFGDYQ 180
Query: 132 NFIFECQSADCKVVHEFIGGYIFLSM 157
+ + Q+ + + + + I GYI + +
Sbjct: 181 DGYYSVQTTEGEQIAQLIAGYIDIIL 206
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton,
M phosphoprotein, cell adhesion, structural protein;
1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Length = 371
Score = 81.9 bits (202), Expect = 4e-19
Identities = 34/147 (23%), Positives = 73/147 (49%), Gaps = 10/147 (6%)
Query: 16 DICAEDYVSSRYIKKLRSKLSQRILEAHANVKDLGLTEAKLSYIRAWQSLPDYGLTLFVI 75
+ +D++ Y+K+ K ++I +AH N + EAK+ Y++ +SL YG++ F++
Sbjct: 230 FLDLKDFLPKEYVKQ---KGERKIFQAHKNCGQMSEIEAKVRYVKLARSLKTYGVSFFLV 286
Query: 76 KPMGHKK----EELLGVTPSRLMRMELSSGDHVRTWRYDTVKAWNVNWEIKHMMLQ-LTD 130
K K LLG+T +MR++ + + ++ W +K W + + + D
Sbjct: 287 KEKMKGKNKLVPRLLGITKECVMRVDEKTKEVIQEWSLTNIKRWAASPKSFTLDFGDYQD 346
Query: 131 GNFIFECQSADCKVVHEFIGGYIFLSM 157
G + + + + + + + I GYI + +
Sbjct: 347 GYYSVQ--TTEGEQIAQLIAGYIDIIL 371
>4dxa_B KREV interaction trapped protein 1; GTPase, FERM, protein-protein
interaction, GTP binding, CYTO protein binding; HET:
GSP; 1.95A {Homo sapiens}
Length = 322
Score = 62.7 bits (152), Expect = 2e-12
Identities = 18/153 (11%), Positives = 46/153 (30%), Gaps = 13/153 (8%)
Query: 20 EDYVSSRYIKKLRSKLSQRILEAHANVKDLGLTEAKLS-----YIRAWQSLPDYGLTLFV 74
+ V +K + RIL + N+ ++ +++ +P YG F
Sbjct: 168 KSIVPVTKLKSKAPHWTNRILHEYKNLSTSEGVSKEMHHLQRMFLQNCWEIPTYGAAFFT 227
Query: 75 IKPMGHK-------KEELLGVTPSRLMRMELSSGDHVRTWRYDTVKAWNVNWEIKHMMLQ 127
+ +GV L + + + + + +Y W + +
Sbjct: 228 GQIFTKASPSNHKVIPVYVGVNIKGLHLLNMETKALLISLKYGCF-MWQLGDTDTCFQIH 286
Query: 128 LTDGNFIFECQSADCKVVHEFIGGYIFLSMRSK 160
+ F + +V + + M ++
Sbjct: 287 SMENKMSFIVHTKQAGLVVKLLMKLNGQLMPTE 319
>3au4_A Myosin-X; protein-protein complex, motor protein cargo
transportation, protein-apoptosis complex; 1.90A {Homo
sapiens} PDB: 3au5_A 3pzd_A
Length = 555
Score = 58.8 bits (141), Expect = 7e-11
Identities = 23/160 (14%), Positives = 60/160 (37%), Gaps = 5/160 (3%)
Query: 8 PAISPASLDICAEDYVSSRYIKKLRSKLSQRILEAHANVKDLGLTEAKLSYIRAWQSLPD 67
E+ + +IK+ S I++ + + +A Y+ + P
Sbjct: 390 FRTGSVVRQKVEEEQMLDMWIKEEVSSARASIIDKWRKFQGMNQEQAMAKYMALIKEWPG 449
Query: 68 YGLTLFVIKPM--GHKKEELLGVTPSRLMRMELSSGDHVRTWRYDTVKAWNVNWEIKHMM 125
YG TLF ++ G +E LGV+ + + G + ++Y+ + ++
Sbjct: 450 YGSTLFDVECKEGGFPQELWLGVSADAVSVYKRGEGRPLEVFQYEHILSFGAP---LANT 506
Query: 126 LQLTDGNFIFECQSADCKVVHEFIGGYIFLSMRSKDANQT 165
++ ++++ V + + YI + ++ + +
Sbjct: 507 YKIVVDERELLFETSEVVDVAKLMKAYISMIVKKRYSTTR 546
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein,
cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP:
a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Length = 314
Score = 47.7 bits (113), Expect = 5e-07
Identities = 32/154 (20%), Positives = 63/154 (40%), Gaps = 11/154 (7%)
Query: 17 ICAEDYVSSRYIKKLRSK---LSQRILEAHANVKDLGLTEAKLSYIRAWQSLPDYGLTLF 73
+ E+ + R I + +RI +A + EA++ Y++ Q L YG+ F
Sbjct: 164 LAQEELLPKRVINLYQMTPEMWEERITAWYAEHRGRARDEAEMEYLKIAQDLEMYGVNYF 223
Query: 74 VIKPMGHKKEELLGVTPSRLMRMELSSGDHVR-TWRYDTVKAWNVNWEIKHMMLQLTDGN 132
I+ E LLGV L + + + ++ ++ ++ N+++ K ++ D
Sbjct: 224 AIRN-KKGTELLLGVDALGLHIYDPENRLTPKISFPWNEIR--NISYSDKEFTIKPLDKK 280
Query: 133 ---FIFECQSAD-CKVVHEFIGGYIFLSMRSKDA 162
F F K++ + G L MR + A
Sbjct: 281 IDVFKFNSSKLRVNKLILQLCIGNHDLFMRRRKA 314
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics
conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A
2he7_A 2rq1_A
Length = 296
Score = 46.9 bits (111), Expect = 8e-07
Identities = 25/137 (18%), Positives = 55/137 (40%), Gaps = 14/137 (10%)
Query: 16 DICAEDYVSS-RYIKKLRSKLSQRILEAHANVKDLGLTEAKLSYIRAWQSLPDYGLTLFV 74
++ DYVS + +L ++++E H + + + +A L ++ + L YG+ L
Sbjct: 151 ELHGVDYVSDFKLAPNQTKELEEKVMELHKSYRSMTPAQADLEFLENAKKLSMYGVDLHK 210
Query: 75 IKPMGHKKEELLGVTPSRLMRMELSSGDHVRTWRYDTVKAWNVNWEIKHMMLQLTDGN-- 132
K + + +LGV S L+ + + W K ++++ +++ G
Sbjct: 211 AKDL-EGVDIILGVCSSGLLVYKDKLRINRFPWP----KVLKISYKRSSFFIKIRPGEQE 265
Query: 133 -----FIFECQSAD-CK 143
F+ S K
Sbjct: 266 QYESTIGFKLPSYRAAK 282
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A
{Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB:
1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A
2zpy_A 1gc7_A 1gc6_A 1ni2_A
Length = 294
Score = 45.0 bits (106), Expect = 3e-06
Identities = 28/150 (18%), Positives = 58/150 (38%), Gaps = 13/150 (8%)
Query: 20 EDYVSSRYIKK---LRSKLSQRILEAHANVKDLGLTEAKLSYIRAWQSLPDYGLTLFVIK 76
+ + R +++ + + +RI H + + +A L Y++ Q L YG+ F IK
Sbjct: 147 DKLLPQRVLEQHKLNKDQWEERIQVWHEEHRGMLREDAVLEYLKIAQDLEMYGVNYFSIK 206
Query: 77 PMGHKKEELLGVTPSRLMRME-LSSGDHVRTWRYDTVKAWNVNWEIKHMMLQLTDG---N 132
E LGV L E + + ++ N+++ K +++ D +
Sbjct: 207 NK-KGSELWLGVDALGLNIYEQNDRLTPKIGFPWSEIR--NISFNDKKFVIKPIDKKAPD 263
Query: 133 FIFECQSAD-CKVVHEFIGGY--IFLSMRS 159
F+F K + G +++ R
Sbjct: 264 FVFYAPRLRINKRILALCMGNHELYMRRRK 293
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin
binding, masking, regulation, SELF-inhibition, cell A
membrane protein; 2.10A {Spodoptera frugiperda} PDB:
2i1k_A 1e5w_A
Length = 575
Score = 45.3 bits (106), Expect = 4e-06
Identities = 26/161 (16%), Positives = 55/161 (34%), Gaps = 9/161 (5%)
Query: 20 EDYVSSRYIKK---LRSKLSQRILEAHANVKDLGLTEAKLSYIRAWQSLPDYGLTLFVIK 76
+ + R + R + Q I + + +A + Y++ Q L YG+ F I+
Sbjct: 150 DRLLPQRVTDQHKMSREEWEQSITNWWQEHRGMLREDAMMEYLKIAQDLEMYGVNYFEIR 209
Query: 77 PMGHKKEELLGVTPSRLMRMELSSGDHVRTWRYDTVKAWNVNWEIKHMMLQLTDGNFI-- 134
E LGV L E + + + N+++ + +++ D
Sbjct: 210 NK-KNTELWLGVDALGLNIYEKDDKLTPKIG-FPWSEIRNISFNDRKFIIKPIDKKAPDF 267
Query: 135 --FECQSADCKVVHEFIGGYIFLSMRSKDANQTLNEDLFHK 173
F + K + G L MR + + + + +
Sbjct: 268 VFFAPRVRVNKRILALCMGNHELYMRRRKPDTIDVQQMKAQ 308
>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein
cargo binding, cargo proteins, motor protein-protein
transport complex; 2.80A {Mus musculus}
Length = 655
Score = 44.9 bits (105), Expect = 5e-06
Identities = 20/160 (12%), Positives = 50/160 (31%), Gaps = 15/160 (9%)
Query: 8 PAISPASLDICAEDYVSSRYIKKLRS--KLSQRILEAHANVKDLGLT----EAKLSYIR- 60
+ L Y+ R I L++ K +Q + AH + K +
Sbjct: 408 SEMILERLLSLVPTYIPDREITPLKNLEKWAQLAIAAHKKGIYAQRRTDSQKVKEDVVNY 467
Query: 61 AWQSLPDYGLTLFVIK----PMGHKKEELLGVTPSRLMRMELSSGDHVRTWRYDTVKAWN 116
A P + P K + ++ V + + ++ + + + A +
Sbjct: 468 ARFKWPLLFSRFYEAYKFSGPPLPKSDVIVAVNWTGVYFVD-EQEQVLLELSFPEIMAVS 526
Query: 117 VNWEIKHMMLQLTDGNF---IFECQSADCKVVHEFIGGYI 153
+ K M T + S++ + + + + ++
Sbjct: 527 SSRGTKMMAPSFTLATIKGDEYTFTSSNAEDIRDLVVTFL 566
>2al6_A Focal adhesion kinase 1; transferase; 2.35A {Gallus gallus} SCOP:
a.11.2.1 b.55.1.5 d.15.1.4 PDB: 2j0m_A* 2aeh_A
Length = 375
Score = 37.9 bits (87), Expect = 8e-04
Identities = 9/73 (12%), Positives = 22/73 (30%), Gaps = 2/73 (2%)
Query: 20 EDYVSSRYIKKLRSK-LSQRILEAHANVKDLGLTEAKLSYIRAWQSLPDYGLTLFVIKPM 78
+ + +++K L + I + +L E+ L + + + F
Sbjct: 174 RRFFPKSLLDSVKAKTLRKLIQQTFRQFANLNREESILKFFEILSPVYRFDKECFKCALG 233
Query: 79 -GHKKEELLGVTP 90
L + P
Sbjct: 234 SSWIISVELAIGP 246
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 34.1 bits (77), Expect = 0.020
Identities = 25/138 (18%), Positives = 52/138 (37%), Gaps = 38/138 (27%)
Query: 66 PDYGLTLFVIKPMGHKKEELLGVTPSRLMRMELSSGDHVRTWR-YDTVKAWNVN-----W 119
+Y F++ P+ K E PS + RM + D R + +NV+
Sbjct: 89 INYK---FLMSPI---KTEQRQ--PSMMTRMYIEQRD--RLYNDNQVFAKYNVSRLQPYL 138
Query: 120 EIKHMMLQLTDGNFIF---------------ECQSADCKVVHEFIGGYIF-LSMRSKDAN 163
+++ +L+L + C KV + IF L++++ ++
Sbjct: 139 KLRQALLELRPAKNVLIDGVLGSGKTWVALDVCL--SYKVQCKMDFK-IFWLNLKNCNSP 195
Query: 164 QTLNE---DLFHKLTGGW 178
+T+ E L +++ W
Sbjct: 196 ETVLEMLQKLLYQIDPNW 213
Score = 30.6 bits (68), Expect = 0.33
Identities = 30/203 (14%), Positives = 57/203 (28%), Gaps = 57/203 (28%)
Query: 4 PAPTPAISPASLDICAE---DYVS-SRYIKKLRSKLSQRILEAHANV------------- 46
P +P L I AE D ++ K + I+E+ NV
Sbjct: 319 PREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRL 378
Query: 47 ----KDLGLTEAKLSYIRAWQSLPDYG----LTLFVIKPM--GHKKEELLGVTPSRLMRM 96
+ LS I W + + + KE + + PS + +
Sbjct: 379 SVFPPSAHIPTILLSLI--WFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI-PSIYLEL 435
Query: 97 ELSSGD----HVRTW-RYDTVKAWNVNWEIKHMMLQLTDGNFIFECQSADCKVVHEFIGG 151
++ + H Y+ K ++ + ++ D F + IG
Sbjct: 436 KVKLENEYALHRSIVDHYNIPKTFDSD----DLIPPYLDQYF------------YSHIG- 478
Query: 152 YIFLSMRSKDANQTLNEDLFHKL 174
+ K+ LF +
Sbjct: 479 HHL-----KNIEHPERMTLFRMV 496
>3hpe_A Conserved hypothetical secreted protein; HP1286, erucamide,
fatty-acid binding; HET: ERU; 2.10A {Helicobacter
pylori}
Length = 164
Score = 30.8 bits (70), Expect = 0.13
Identities = 8/29 (27%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Query: 105 RTWRYDTVKAWNVNWEIKHMMLQLTDGNF 133
+ + D + +V +E+KH T G F
Sbjct: 1 KPYTIDKANS-SVWFEVKHFKFNETRGVF 28
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.8 bits (69), Expect = 0.27
Identities = 33/205 (16%), Positives = 65/205 (31%), Gaps = 62/205 (30%)
Query: 2 QKPAPTPAISPASLDICAEDY---------VSSRYIKKLRSKLSQRILEAHANVKDLGLT 52
+ P ++ P+ L+ E+ +S+ L+Q ++ + N + L
Sbjct: 311 YEAYPNTSLPPSILEDSLENNEGVPSPMLSISN---------LTQEQVQDYVNKTNSHLP 361
Query: 53 EAKLSYIRAWQSL---PDYGLTLFVIKPMGHKKEELLGVTPSRLMRMELSSG-DHVRT-- 106
K I SL V+ G + L G+ L + + SG D R
Sbjct: 362 AGKQVEI----SLVNGAKN----LVVS--GP-PQSLYGLN-LTLRKAKAPSGLDQSRIPF 409
Query: 107 --------WRYDTVKA-------WNVNWEIKHMMLQLTDGNFIFECQSADCKV-VHEFIG 150
R+ V + + I L N F + D ++ V++
Sbjct: 410 SERKLKFSNRFLPVASPFHSHLLVPASDLINK---DLVKNNVSF--NAKDIQIPVYDTFD 464
Query: 151 GYIFLSMRSKDANQTLNEDLFHKLT 175
G +R + ++E + +
Sbjct: 465 GS---DLRVLSGS--ISERIVDCII 484
>1y0g_A Protein YCEI; lipid binding protein, lipocalin, cofactor, coenzyme,
dehydrogenase, hydrolase, predicted, structural
genomics; HET: 8PP; 2.20A {Escherichia coli} SCOP:
b.61.6.1
Length = 191
Score = 29.7 bits (67), Expect = 0.31
Identities = 7/29 (24%), Positives = 12/29 (41%), Gaps = 1/29 (3%)
Query: 106 TWRYDTVKA-WNVNWEIKHMMLQLTDGNF 133
++ D VN+ I+H+ G F
Sbjct: 24 DYKIDKEGQHAFVNFRIQHLGYSWLYGTF 52
>2fgs_A Putative periplasmic protein; lipid binding protein, structural
genomics, protein structure initiative, PSI, nysgxrc;
2.90A {Campylobacter jejuni}
Length = 179
Score = 28.5 bits (64), Expect = 0.82
Identities = 8/29 (27%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 105 RTWRYDTVKAWNVNWEIKHMMLQLTDGNF 133
+ + D +V ++IKH+ + GNF
Sbjct: 1 KEYTLDKAHT-DVGFKIKHLQISNVKGNF 28
>2pv4_A Uncharacterized protein; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; HET: MSE; 1.95A {Shewanella amazonensis} SCOP:
a.286.1.1
Length = 145
Score = 28.2 bits (62), Expect = 0.83
Identities = 13/41 (31%), Positives = 22/41 (53%)
Query: 33 SKLSQRILEAHANVKDLGLTEAKLSYIRAWQSLPDYGLTLF 73
+L + +L A+ ++ D L + + RAW LPD +LF
Sbjct: 28 DRLPESLLTAYRSLCDELLADRDGRFTRAWDQLPDSASSLF 68
>1e4c_P L-fuculose 1-phosphate aldolase; aldolase (class II), bacterial
L-fucose metabolism; 1.66A {Escherichia coli} SCOP:
c.74.1.1 PDB: 1fua_A 2fua_A 3fua_A 4fua_A* 1dzv_P 1e4b_P
1e47_P* 1e48_P* 1dzz_P 1e46_P 1dzu_P 1dzy_P 1dzx_P
1dzw_P 1e49_P 1e4a_P
Length = 215
Score = 28.8 bits (65), Expect = 0.87
Identities = 19/77 (24%), Positives = 36/77 (46%), Gaps = 16/77 (20%)
Query: 31 LRSKLSQRILEAHANVKDLGLTEAK---LSYIRAWQSLPDYGLTLFVIKPMGHKKEELLG 87
R+KL+++I++ + LGL + +S +R D +I P G E+L
Sbjct: 2 ERNKLARQIIDTCLEMTRLGLNQGTAGNVS-VR----YQD----GMLITPTGIPYEKL-- 50
Query: 88 VTPSRLMRMELSSGDHV 104
T S ++ ++ +G H
Sbjct: 51 -TESHIVFIDG-NGKHE 65
>1wub_A Conserved hypothetical protein TT1927B; beta-barrel, structural
genomics, riken structural genomics/proteomics
initiative, RSGI; HET: OTP; 1.65A {Thermus thermophilus}
SCOP: b.61.6.1
Length = 178
Score = 28.1 bits (63), Expect = 1.3
Identities = 5/28 (17%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Query: 106 TWRYDTVKAWNVNWEIKHMMLQLTDGNF 133
W D +++++++HM + G+
Sbjct: 2 KWNLDPSHT-SIDFKVRHMGIASVRGSL 28
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.6 bits (60), Expect = 1.7
Identities = 7/26 (26%), Positives = 12/26 (46%), Gaps = 6/26 (23%)
Query: 28 IKKLRSKL------SQRILEAHANVK 47
+KKL++ L S L A ++
Sbjct: 22 LKKLQASLKLYADDSAPALAIKATME 47
>2hu9_A MERP, mercuric transport protein periplasmic component; copper
chaperone, iron-sufur protein, COPZ, ATX1, ATOX1, metal
transport; 1.78A {Archaeoglobus fulgidus}
Length = 130
Score = 26.9 bits (59), Expect = 2.8
Identities = 12/45 (26%), Positives = 18/45 (40%), Gaps = 2/45 (4%)
Query: 111 TVKAWNVNWEIKHMMLQLTDGNFIFECQSADCKVVHEFIGGYIFL 155
V V +K + G+F F C C+VV+ F +F
Sbjct: 13 RVLPLTVGAHVKEGLWSKIKGDFYF-CSLESCEVVY-FNEQTVFR 55
>1ms9_A Trans-sialidase; trans-glycosylation, protein-acrbohydrate interac
beta-propeller, hydrolase; HET: LAT; 1.58A {Trypanosoma
cruzi} SCOP: b.29.1.15 b.68.1.1 PDB: 1ms0_A* 1mr5_A*
1ms1_A 1ms4_A 1ms8_A* 1ms3_A* 2ah2_A* 3b69_A* 3opz_A
3pjq_A* 1s0i_A* 1s0j_A* 1ms5_A 1wcs_A 2ags_A* 2a75_A*
2fhr_A* 1n1t_A* 1n1s_A* 1n1v_A* ...
Length = 648
Score = 26.7 bits (58), Expect = 5.3
Identities = 16/94 (17%), Positives = 29/94 (30%), Gaps = 28/94 (29%)
Query: 87 GVTPSRLMRMELSSGDHVRTWRYDTVKAWNV-----------NWEIK---HMMLQLTDGN 132
G +P ++ S G + YD W +WE+ H++L + +
Sbjct: 510 GASPLLGASLDSSGGKKLLGLSYDKRHQWQPIYGSTPVTPTGSWEMGKRYHVVLTMANKI 569
Query: 133 FIFE------CQSADCK--------VVHEFIGGY 152
S + H ++GGY
Sbjct: 570 GSVYIDGEPLEGSGQTVVPDERTPDISHFYVGGY 603
>2irp_A Putative aldolase class 2 protein AQ_1979; aldehyde, enzymatic
mechanism; 2.40A {Aquifex aeolicus}
Length = 208
Score = 26.1 bits (58), Expect = 5.8
Identities = 13/68 (19%), Positives = 20/68 (29%), Gaps = 18/68 (26%)
Query: 51 LTEAKLSYIRAWQSLPDYGLT--------------LFVIKPMGHKKEELLGVTPSRLMRM 96
+E I A + L G I G K +L TP ++ +
Sbjct: 9 FSEKVEEIIEAGRILHSRGWVPATSGNISAKVSEEYIAITASGKHKGKL---TPEDILLI 65
Query: 97 ELSSGDHV 104
+ G V
Sbjct: 66 DY-EGRPV 72
>3h6j_A Neuraminidase, sialidase; six-bladed beta-propeller, cell WALL,
glycosidase, hydrolase, peptidoglycan-anchor, secreted;
1.60A {Pseudomonas aeruginosa} PDB: 2w38_A
Length = 438
Score = 26.3 bits (57), Expect = 7.8
Identities = 13/68 (19%), Positives = 19/68 (27%), Gaps = 7/68 (10%)
Query: 98 LSSGDHVRTWRYDTVKAWNVNWEIKHMMLQLTDGNFIFECQSADCKVVHEFIGGYIFLSM 157
L S D TW + + L + DG + + GG +
Sbjct: 158 LESSDGGETWGEGSTIYSGNTPYNETSYLPVGDGVILAVARVGS------GAGGALRQF- 210
Query: 158 RSKDANQT 165
S D T
Sbjct: 211 ISLDDGGT 218
>3gvz_A Uncharacterized protein CV2077; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; 2.80A
{Chromobacterium violaceum atcc 12472}
Length = 299
Score = 25.8 bits (56), Expect = 9.8
Identities = 10/108 (9%), Positives = 22/108 (20%), Gaps = 6/108 (5%)
Query: 67 DYGLTLFVIKPMGHKKEELLGVTPSRLMRMELSSGDHVRTWRYDTVKAWNVNWEIKHMML 126
GL + + + ++ L + ++L
Sbjct: 86 QKGLAVVAAEASSLPRALRADSARHGVLTRLLRDYGSLDEV-ASAADKLFAQARPVFLLL 144
Query: 127 QLTDGNFIFECQSADCKVVHEFIGGYI-----FLSMRSKDANQTLNED 169
G E + G + + D QT+
Sbjct: 145 ADAGGLMQVEIGQHGRYRLIRQQSGTLAHTNHYADTSLLDGAQTIGPS 192
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.135 0.416
Gapped
Lambda K H
0.267 0.0622 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,751,845
Number of extensions: 151618
Number of successful extensions: 267
Number of sequences better than 10.0: 1
Number of HSP's gapped: 256
Number of HSP's successfully gapped: 30
Length of query: 178
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 91
Effective length of database: 4,272,666
Effective search space: 388812606
Effective search space used: 388812606
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (24.8 bits)