RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy14197
(178 letters)
>d1mixa2 b.55.1.5 (A:309-400) Talin {Chicken (Gallus gallus) [TaxId:
9031]}
Length = 92
Score = 37.5 bits (87), Expect = 9e-05
Identities = 17/88 (19%), Positives = 40/88 (45%), Gaps = 7/88 (7%)
Query: 69 GLTLFVIKPM--GHKKEE--LLGVTPSRLMRMELSSGDHVRTWRYDTVKAWNVNWEIKHM 124
G++ F++K G K LLG+T +MR++ + + ++ W +K W + + +
Sbjct: 1 GVSFFLVKEKMKGKNKLVPRLLGITKECVMRVDEKTKEVIQEWSLTNIKRWAASPKSFTL 60
Query: 125 ML-QLTDGNFIFECQSAD--CKVVHEFI 149
DG + + + +++ +I
Sbjct: 61 DFGDYQDGYYSVQTTEGEQIAQLIAGYI 88
>d1mixa1 a.11.2.1 (A:195-308) Talin {Chicken (Gallus gallus) [TaxId:
9031]}
Length = 114
Score = 32.6 bits (74), Expect = 0.008
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Query: 20 EDYVSSRYIKKLRSKLSQRILEAHANVKDLGLTEAKLSYIRAWQSLPDY 68
+D++ YIK+ K ++I AH N ++ EAK+ Y++ +SL Y
Sbjct: 69 KDFLPKEYIKQ---KGERKIFMAHKNCGNMSEIEAKVRYVKLARSLKTY 114
>d1gg3a1 a.11.2.1 (A:82-187) Erythroid membrane protein 4.1R {Human
(Homo sapiens) [TaxId: 9606]}
Length = 106
Score = 32.2 bits (73), Expect = 0.009
Identities = 11/54 (20%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 16 DICAEDYVSS-RYIKKLRSKLSQRILEAHANVKDLGLTEAKLSYIRAWQSLPDY 68
++ DYVS + +L ++++E H + + + +A L ++ + L Y
Sbjct: 53 ELHGVDYVSDFKLAPNQTKELEEKVMELHKSYRSMTPAQADLEFLENAKKLSMY 106
>d1h4ra1 a.11.2.1 (A:104-214) Merlin {Human (Homo sapiens) [TaxId:
9606]}
Length = 111
Score = 27.1 bits (60), Expect = 0.61
Identities = 11/49 (22%), Positives = 21/49 (42%), Gaps = 3/49 (6%)
Query: 20 EDYVSSRYIKKLRSK---LSQRILEAHANVKDLGLTEAKLSYIRAWQSL 65
E+ + R I + +RI +A + EA++ Y++ Q L
Sbjct: 63 EELLPKRVINLYQMTPEMWEERITAWYAEHRGRARDEAEMEYLKIAQDL 111
>d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 157
Score = 27.5 bits (60), Expect = 0.65
Identities = 21/132 (15%), Positives = 46/132 (34%), Gaps = 13/132 (9%)
Query: 45 NVKDLGLTEAKLSYIRAWQSLPDYGLTLFVIKPMGHKKEELLGVTPSRLMRMELSSGDHV 104
++ LG L Y+ L T+ +++ KK ++ G +++ L
Sbjct: 7 ILEKLGDICFSLRYVPTAGKL-----TVVILEAKNLKKMDVGG-LSDPYVKIHLMQNGKR 60
Query: 105 RTWRYDTVKA------WNVNWEIKHMMLQLTDGNFIFECQSADCKVVHEFIGGYIFLSMR 158
+ T+K +N ++ + Q+ + D ++ IG +F+
Sbjct: 61 LKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGK-VFVGYN 119
Query: 159 SKDANQTLNEDL 170
S A D+
Sbjct: 120 STGAELRHWSDM 131
>d1k0wa_ c.74.1.1 (A:) L-ribulose-5-phosphate 4-epimerase
{Escherichia coli [TaxId: 562]}
Length = 223
Score = 27.6 bits (60), Expect = 0.68
Identities = 16/92 (17%), Positives = 33/92 (35%), Gaps = 7/92 (7%)
Query: 34 KLSQRILEAHANVKDLGLTEAKLSYIRAWQSLPDYGLTLFVIKPMGHKKEELLGVTPSRL 93
L +++LEA+ + L + S D +FVIKP G + T +
Sbjct: 4 DLKRQVLEANLALPKHNLVTLTWGNV----SAVDRERGVFVIKPSGVDYSIM---TADDM 56
Query: 94 MRMELSSGDHVRTWRYDTVKAWNVNWEIKHMM 125
+ + + +G+ V + + +
Sbjct: 57 VVVSIETGEVVEGAKKPSSDTPTHRLLYQAFP 88
>d1ef1a1 a.11.2.1 (A:88-198) Moesin {Human (Homo sapiens) [TaxId:
9606]}
Length = 111
Score = 26.8 bits (59), Expect = 0.76
Identities = 9/49 (18%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
Query: 20 EDYVSSRYIKK---LRSKLSQRILEAHANVKDLGLTEAKLSYIRAWQSL 65
+ + R +++ + + +RI H + + +A L Y++ Q L
Sbjct: 63 DKLLPQRVLEQHKLNKDQWEERIQVWHEEHRGMLREDAVLEYLKIAQDL 111
>d2al6a1 a.11.2.1 (A:131-253) Focal adhesion kinase 1 {Chicken
(Gallus gallus) [TaxId: 9031]}
Length = 123
Score = 26.6 bits (58), Expect = 1.0
Identities = 6/53 (11%), Positives = 19/53 (35%), Gaps = 1/53 (1%)
Query: 17 ICAEDYVSSRYIKKLRSK-LSQRILEAHANVKDLGLTEAKLSYIRAWQSLPDY 68
+ + + +++K L + I + +L E+ L + + +
Sbjct: 71 VGLRRFFPKSLLDSVKAKTLRKLIQQTFRQFANLNREESILKFFEILSPVYRF 123
>d1y0ga_ b.61.6.1 (A:) Lipid binding protein YceI {Escherichia coli
[TaxId: 562]}
Length = 169
Score = 26.9 bits (59), Expect = 1.0
Identities = 7/29 (24%), Positives = 12/29 (41%), Gaps = 1/29 (3%)
Query: 106 TWRYDTVKA-WNVNWEIKHMMLQLTDGNF 133
++ D VN+ I+H+ G F
Sbjct: 2 DYKIDKEGQHAFVNFRIQHLGYSWLYGTF 30
>d1wuba_ b.61.6.1 (A:) Polyisoprenoid-binding protein TTHA0802
(TT1927B) {Thermus thermophilus [TaxId: 274]}
Length = 176
Score = 26.2 bits (57), Expect = 1.8
Identities = 5/27 (18%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 107 WRYDTVKAWNVNWEIKHMMLQLTDGNF 133
W D +++++++HM + G+
Sbjct: 3 WNLDPSHT-SIDFKVRHMGIASVRGSL 28
>d2aala1 d.80.1.6 (A:1-129) Malonate semialdehyde decarboxylase,
MSAD {Pseudomonas pavonaceae [TaxId: 47881]}
Length = 129
Score = 25.6 bits (56), Expect = 2.7
Identities = 10/65 (15%), Positives = 19/65 (29%), Gaps = 1/65 (1%)
Query: 111 TVKAWNVN-WEIKHMMLQLTDGNFIFECQSADCKVVHEFIGGYIFLSMRSKDANQTLNED 169
V A+ V + + Q G + E + + RS++ +
Sbjct: 27 MVDAFGVPANDRYQTVSQHRPGEMVLEDTGLGYGRSSAVVLLTVISRPRSEEQKVCFYKL 86
Query: 170 LFHKL 174
L L
Sbjct: 87 LTGAL 91
>d1n81a_ a.185.1.1 (A:) Gametocyte protein Pfg27 {Malaria parasite
(Plasmodium falciparum) [TaxId: 5833]}
Length = 186
Score = 25.7 bits (56), Expect = 2.9
Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 10 ISPASLDICAEDYVSSRYIKKLRS--KLSQRILE 41
IS + C + V+ YIKK+ + QR++E
Sbjct: 81 ISDRLISYCTDKEVTEDYIKKIDDYLWVEQRVIE 114
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.135 0.416
Gapped
Lambda K H
0.267 0.0522 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 686,850
Number of extensions: 30313
Number of successful extensions: 74
Number of sequences better than 10.0: 1
Number of HSP's gapped: 74
Number of HSP's successfully gapped: 12
Length of query: 178
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 98
Effective length of database: 1,309,196
Effective search space: 128301208
Effective search space used: 128301208
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.5 bits)