BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14198
(149 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1AMI|A Chain A, Steric And Conformational Features Of The Aconitase
Mechanism
pdb|1AMJ|A Chain A, Steric And Conformational Features Of The Aconitase
Mechanism
Length = 754
Score = 142 bits (358), Expect = 6e-35, Method: Composition-based stats.
Identities = 68/96 (70%), Positives = 80/96 (83%), Gaps = 1/96 (1%)
Query: 30 QSYAVPMSKFD-KDHLPYGKLEKTLQVIRKRLNRPLTLSEKILYSHIDDPEKQDIERGVS 88
Q V MS F+ +++ Y LEK + ++RKRLNRPLTLSEKI+Y H+DDP Q+IERG +
Sbjct: 1 QRAKVAMSHFEPHEYIRYDLLEKNIDIVRKRLNRPLTLSEKIVYGHLDDPANQEIERGKT 60
Query: 89 YLRLRPDRVAMQDATAQMAMLQFISSGLPRVAVPST 124
YLRLRPDRVAMQDATAQMAMLQFISSGLP+VAVPST
Sbjct: 61 YLRLRPDRVAMQDATAQMAMLQFISSGLPKVAVPST 96
>pdb|1B0J|A Chain A, Crystal Structure Of Aconitase With Isocitrate
Length = 754
Score = 142 bits (358), Expect = 7e-35, Method: Composition-based stats.
Identities = 68/96 (70%), Positives = 80/96 (83%), Gaps = 1/96 (1%)
Query: 30 QSYAVPMSKFD-KDHLPYGKLEKTLQVIRKRLNRPLTLSEKILYSHIDDPEKQDIERGVS 88
Q V MS F+ +++ Y LEK + ++RKRLNRPLTLSEKI+Y H+DDP Q+IERG +
Sbjct: 1 QRAKVAMSHFEPHEYIRYDLLEKNIDIVRKRLNRPLTLSEKIVYGHLDDPANQEIERGKT 60
Query: 89 YLRLRPDRVAMQDATAQMAMLQFISSGLPRVAVPST 124
YLRLRPDRVAMQDATAQMAMLQFISSGLP+VAVPST
Sbjct: 61 YLRLRPDRVAMQDATAQMAMLQFISSGLPKVAVPST 96
>pdb|1ACO|A Chain A, Crystal Structure Of Aconitase With Transaconitate Bound
pdb|1FGH|A Chain A, Complex With 4-Hydroxy-Trans-Aconitate
pdb|8ACN|A Chain A, Crystal Structures Of Aconitase With Isocitrate And
Nitroisocitrate Bound
Length = 754
Score = 141 bits (356), Expect = 1e-34, Method: Composition-based stats.
Identities = 67/92 (72%), Positives = 79/92 (85%), Gaps = 1/92 (1%)
Query: 34 VPMSKFD-KDHLPYGKLEKTLQVIRKRLNRPLTLSEKILYSHIDDPEKQDIERGVSYLRL 92
V MS F+ +++ Y LEK + ++RKRLNRPLTLSEKI+Y H+DDP Q+IERG +YLRL
Sbjct: 5 VAMSHFEPHEYIRYDLLEKNIDIVRKRLNRPLTLSEKIVYGHLDDPANQEIERGKTYLRL 64
Query: 93 RPDRVAMQDATAQMAMLQFISSGLPRVAVPST 124
RPDRVAMQDATAQMAMLQFISSGLP+VAVPST
Sbjct: 65 RPDRVAMQDATAQMAMLQFISSGLPKVAVPST 96
>pdb|1C97|A Chain A, S642a:isocitrate Complex Of Aconitase
pdb|1B0K|A Chain A, S642a:fluorocitrate Complex Of Aconitase
Length = 753
Score = 141 bits (356), Expect = 1e-34, Method: Composition-based stats.
Identities = 67/92 (72%), Positives = 79/92 (85%), Gaps = 1/92 (1%)
Query: 34 VPMSKFD-KDHLPYGKLEKTLQVIRKRLNRPLTLSEKILYSHIDDPEKQDIERGVSYLRL 92
V MS F+ +++ Y LEK + ++RKRLNRPLTLSEKI+Y H+DDP Q+IERG +YLRL
Sbjct: 4 VAMSHFEPHEYIRYDLLEKNIDIVRKRLNRPLTLSEKIVYGHLDDPANQEIERGKTYLRL 63
Query: 93 RPDRVAMQDATAQMAMLQFISSGLPRVAVPST 124
RPDRVAMQDATAQMAMLQFISSGLP+VAVPST
Sbjct: 64 RPDRVAMQDATAQMAMLQFISSGLPKVAVPST 95
>pdb|1C96|A Chain A, S642a:citrate Complex Of Aconitase
Length = 753
Score = 141 bits (356), Expect = 1e-34, Method: Composition-based stats.
Identities = 67/92 (72%), Positives = 79/92 (85%), Gaps = 1/92 (1%)
Query: 34 VPMSKFD-KDHLPYGKLEKTLQVIRKRLNRPLTLSEKILYSHIDDPEKQDIERGVSYLRL 92
V MS F+ +++ Y LEK + ++RKRLNRPLTLSEKI+Y H+DDP Q+IERG +YLRL
Sbjct: 4 VAMSHFEPHEYIRYDLLEKNIDIVRKRLNRPLTLSEKIVYGHLDDPANQEIERGKTYLRL 63
Query: 93 RPDRVAMQDATAQMAMLQFISSGLPRVAVPST 124
RPDRVAMQDATAQMAMLQFISSGLP+VAVPST
Sbjct: 64 RPDRVAMQDATAQMAMLQFISSGLPKVAVPST 95
>pdb|1NIS|A Chain A, Crystal Structure Of Aconitase With Trans-Aconitate And
Nitrocitrate Bound
pdb|1NIT|A Chain A, Crystal Structure Of Aconitase With Trans-Aconitate And
Nitrocitrate Bound
Length = 754
Score = 141 bits (356), Expect = 1e-34, Method: Composition-based stats.
Identities = 67/92 (72%), Positives = 79/92 (85%), Gaps = 1/92 (1%)
Query: 34 VPMSKFD-KDHLPYGKLEKTLQVIRKRLNRPLTLSEKILYSHIDDPEKQDIERGVSYLRL 92
V MS F+ +++ Y LEK + ++RKRLNRPLTLSEKI+Y H+DDP Q+IERG +YLRL
Sbjct: 5 VAMSHFEPHEYIRYDLLEKNIDIVRKRLNRPLTLSEKIVYGHLDDPANQEIERGKTYLRL 64
Query: 93 RPDRVAMQDATAQMAMLQFISSGLPRVAVPST 124
RPDRVAMQDATAQMAMLQFISSGLP+VAVPST
Sbjct: 65 RPDRVAMQDATAQMAMLQFISSGLPKVAVPST 96
>pdb|1B0M|A Chain A, Aconitase R644q:fluorocitrate Complex
Length = 753
Score = 141 bits (356), Expect = 1e-34, Method: Composition-based stats.
Identities = 67/92 (72%), Positives = 79/92 (85%), Gaps = 1/92 (1%)
Query: 34 VPMSKFD-KDHLPYGKLEKTLQVIRKRLNRPLTLSEKILYSHIDDPEKQDIERGVSYLRL 92
V MS F+ +++ Y LEK + ++RKRLNRPLTLSEKI+Y H+DDP Q+IERG +YLRL
Sbjct: 4 VAMSHFEPHEYIRYDLLEKNIDIVRKRLNRPLTLSEKIVYGHLDDPANQEIERGKTYLRL 63
Query: 93 RPDRVAMQDATAQMAMLQFISSGLPRVAVPST 124
RPDRVAMQDATAQMAMLQFISSGLP+VAVPST
Sbjct: 64 RPDRVAMQDATAQMAMLQFISSGLPKVAVPST 95
>pdb|5ACN|A Chain A, Structure Of Activated Aconitase. Formation Of The
(4fe-4s) Cluster In The Crystal
pdb|6ACN|A Chain A, Structure Of Activated Aconitase. Formation Of The
(4fe-4s) Cluster In The Crystal
pdb|7ACN|A Chain A, Crystal Structures Of Aconitase With Isocitrate And
Nitroisocitrate Bound
Length = 754
Score = 141 bits (356), Expect = 1e-34, Method: Composition-based stats.
Identities = 67/92 (72%), Positives = 79/92 (85%), Gaps = 1/92 (1%)
Query: 34 VPMSKFD-KDHLPYGKLEKTLQVIRKRLNRPLTLSEKILYSHIDDPEKQDIERGVSYLRL 92
V MS F+ +++ Y LEK + ++RKRLNRPLTLSEKI+Y H+DDP Q+IERG +YLRL
Sbjct: 5 VAMSHFEPHEYIRYDLLEKNIDIVRKRLNRPLTLSEKIVYGHLDDPANQEIERGKTYLRL 64
Query: 93 RPDRVAMQDATAQMAMLQFISSGLPRVAVPST 124
RPDRVAMQDATAQMAMLQFISSGLP+VAVPST
Sbjct: 65 RPDRVAMQDATAQMAMLQFISSGLPKVAVPST 96
>pdb|1SHS|A Chain A, Small Heat Shock Protein From Methanococcus Jannaschii
pdb|1SHS|B Chain B, Small Heat Shock Protein From Methanococcus Jannaschii
pdb|1SHS|C Chain C, Small Heat Shock Protein From Methanococcus Jannaschii
pdb|1SHS|D Chain D, Small Heat Shock Protein From Methanococcus Jannaschii
pdb|1SHS|E Chain E, Small Heat Shock Protein From Methanococcus Jannaschii
pdb|1SHS|F Chain F, Small Heat Shock Protein From Methanococcus Jannaschii
pdb|1SHS|G Chain G, Small Heat Shock Protein From Methanococcus Jannaschii
pdb|1SHS|H Chain H, Small Heat Shock Protein From Methanococcus Jannaschii
Length = 147
Score = 30.4 bits (67), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 45/89 (50%), Gaps = 12/89 (13%)
Query: 40 DKDHLPYGKLEKTLQVIRKRLNRPLTLSEKILYSHIDDPEKQDIERGVSYLRLRPDRVAM 99
+K+ + + TL++ KR +T SE+I+YS I PE+++I R + P V
Sbjct: 64 NKEDIILNAVGDTLEIRAKRSPLMITESERIIYSEI--PEEEEIYRTIKL----PATVKE 117
Query: 100 QDATAQMAMLQFISSGLPRVAVPSTNDSI 128
++A+A+ +G+ V +P SI
Sbjct: 118 ENASAKF------ENGVLSVILPKAESSI 140
>pdb|4ELD|A Chain A, Crystal Structure Of An Activated Variant Of Small Heat
Shock Protein Hsp16.5
pdb|4ELD|B Chain B, Crystal Structure Of An Activated Variant Of Small Heat
Shock Protein Hsp16.5
Length = 161
Score = 30.0 bits (66), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 45/89 (50%), Gaps = 12/89 (13%)
Query: 40 DKDHLPYGKLEKTLQVIRKRLNRPLTLSEKILYSHIDDPEKQDIERGVSYLRLRPDRVAM 99
+K+ + + TL++ KR +T SE+I+YS I PE+++I R + P V
Sbjct: 78 NKEDIILNAVGDTLEIRAKRSPLMITESERIIYSEI--PEEEEIYRTIKL----PATVKE 131
Query: 100 QDATAQMAMLQFISSGLPRVAVPSTNDSI 128
++A+A+ +G+ V +P SI
Sbjct: 132 ENASAKF------ENGVLSVILPKAESSI 154
>pdb|3MBF|A Chain A, Crystal Structure Of Fructose Bisphosphate Aldolase From
Encephalitozoon Cuniculi, Bound To Fructose
1,6-Bisphosphate
pdb|3MBD|A Chain A, Crystal Structure Of Fructose Bisphosphate Aldolase From
Encephalitozoon Cuniculi, Bound To Phosphate
pdb|3QRH|A Chain A, Crystal Structure Of Fructose Bisphosphate Aldolase From
Encephalitozoon Cuniculi, Bound To Glyceraldehyde
3-Phosphate
Length = 342
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 75 IDDPEKQDIERGVSYLRLRPDRVAMQDAT-AQMAMLQFISSGLPRVAVPSTNDSIVP 130
ID EK+ I G+ L LR A +DAT A+ L + G+P + N SI+
Sbjct: 111 IDYKEKEKISVGLEDLDLRCKSSAFKDATFAKWRSLFYFYDGIPSEDCINENCSILA 167
>pdb|2FFU|A Chain A, Crystal Structure Of Human Ppgalnact-2 Complexed With Udp
And Ea2
pdb|2FFV|A Chain A, Human Ppgalnact-2 Complexed With Manganese And Udp
pdb|2FFV|B Chain B, Human Ppgalnact-2 Complexed With Manganese And Udp
Length = 501
Score = 28.1 bits (61), Expect = 1.9, Method: Composition-based stats.
Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Query: 33 AVPMSKFDKDHLPYGKLEKTLQVIRKRLNRPLTLSEKILYSHIDDPEKQDIERG 86
AVP ++ ++PYG ++ L++ +K +P + +Y + P+ QDI G
Sbjct: 329 AVPSAR----NVPYGNIQSRLELRKKLSCKPFKWYLENVYPELRVPDHQDIAFG 378
>pdb|1C3C|A Chain A, T. Maritima Adenylosuccinate Lyase
pdb|1C3C|B Chain B, T. Maritima Adenylosuccinate Lyase
Length = 429
Score = 28.1 bits (61), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 53/110 (48%), Gaps = 29/110 (26%)
Query: 26 HRTPQSYAVPMSKFDKDHLPYGKLEKTLQVIRKRLNRPLTLSEKILYSHIDD-------- 77
H P S+ + + + Y ++++ +Q RL R + E++ Y I
Sbjct: 143 HAEPTSFGLKVLGW------YSEMKRNVQ----RLERAI---EEVSYGKISGAVGNYANV 189
Query: 78 -PEKQDIERGVSYLRLRPDRVAMQ----DATA-QMAMLQFISSGLPRVAV 121
PE + E+ +SYL L+P+ V+ Q D A ++ L +++G+ R+AV
Sbjct: 190 PPEVE--EKALSYLGLKPEPVSTQVVPRDRHAFYLSTLAIVAAGIERIAV 237
>pdb|3S7T|A Chain A, Crystal Structure Of Semet B. Licheniformis Cdps Yvmc-Blic
pdb|3S7T|B Chain B, Crystal Structure Of Semet B. Licheniformis Cdps Yvmc-Blic
Length = 257
Score = 28.1 bits (61), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 7/55 (12%)
Query: 45 PYGKLEKTLQVIRKRLNRPLTLSEKILYSHIDDPEK----QDIERGVSYLRLRPD 95
P+GK E+ +RK ++R +EK L +H +PE D +Y LR +
Sbjct: 81 PHGKAERK---VRKEVSRNRRFAEKALEAHGGNPEDIHTFSDFANQTAYRNLRXE 132
>pdb|1C3U|A Chain A, T. Maritima Adenylosuccinate Lyase
pdb|1C3U|B Chain B, T. Maritima Adenylosuccinate Lyase
Length = 431
Score = 28.1 bits (61), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 53/110 (48%), Gaps = 29/110 (26%)
Query: 26 HRTPQSYAVPMSKFDKDHLPYGKLEKTLQVIRKRLNRPLTLSEKILYSHIDD-------- 77
H P S+ + + + Y ++++ +Q RL R + E++ Y I
Sbjct: 144 HAEPTSFGLKVLGW------YSEMKRNVQ----RLERAI---EEVSYGKISGAVGNYANV 190
Query: 78 -PEKQDIERGVSYLRLRPDRVAMQ----DATA-QMAMLQFISSGLPRVAV 121
PE + E+ +SYL L+P+ V+ Q D A ++ L +++G+ R+AV
Sbjct: 191 PPEVE--EKALSYLGLKPEPVSTQVVPRDRHAFYLSTLAIVAAGIERIAV 238
>pdb|2YPT|A Chain A, Crystal Structure Of The Human Nuclear Membrane Zinc
Metalloprotease Zmpste24 Mutant (E336a) In Complex With
A Synthetic Csim Tetrapeptide From The C-Terminus Of
Prelamin A
pdb|2YPT|B Chain B, Crystal Structure Of The Human Nuclear Membrane Zinc
Metalloprotease Zmpste24 Mutant (E336a) In Complex With
A Synthetic Csim Tetrapeptide From The C-Terminus Of
Prelamin A
pdb|2YPT|D Chain D, Crystal Structure Of The Human Nuclear Membrane Zinc
Metalloprotease Zmpste24 Mutant (E336a) In Complex With
A Synthetic Csim Tetrapeptide From The C-Terminus Of
Prelamin A
pdb|2YPT|E Chain E, Crystal Structure Of The Human Nuclear Membrane Zinc
Metalloprotease Zmpste24 Mutant (E336a) In Complex With
A Synthetic Csim Tetrapeptide From The C-Terminus Of
Prelamin A
Length = 482
Score = 27.7 bits (60), Expect = 2.7, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 23/35 (65%), Gaps = 3/35 (8%)
Query: 32 YAVPMSKFDK-DHLPYGKLEKTLQVIRKRLNRPLT 65
Y P+ FDK LP GKL++ ++V+ K ++ PLT
Sbjct: 218 YIAPL--FDKFTPLPEGKLKEEIEVMAKSIDFPLT 250
>pdb|4AW6|A Chain A, Crystal Structure Of The Human Nuclear Membrane Zinc
Metalloprotease Zmpste24 (Face1)
pdb|4AW6|B Chain B, Crystal Structure Of The Human Nuclear Membrane Zinc
Metalloprotease Zmpste24 (Face1)
pdb|4AW6|D Chain D, Crystal Structure Of The Human Nuclear Membrane Zinc
Metalloprotease Zmpste24 (Face1)
pdb|4AW6|E Chain E, Crystal Structure Of The Human Nuclear Membrane Zinc
Metalloprotease Zmpste24 (Face1)
Length = 482
Score = 27.7 bits (60), Expect = 2.7, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 23/35 (65%), Gaps = 3/35 (8%)
Query: 32 YAVPMSKFDK-DHLPYGKLEKTLQVIRKRLNRPLT 65
Y P+ FDK LP GKL++ ++V+ K ++ PLT
Sbjct: 218 YIAPL--FDKFTPLPEGKLKEEIEVMAKSIDFPLT 250
>pdb|3OQH|A Chain A, Crystal Structure Of B. Licheniformis Cdps Yvmc-Blic
pdb|3OQH|B Chain B, Crystal Structure Of B. Licheniformis Cdps Yvmc-Blic
pdb|3OQI|A Chain A, Crystal Structure Of B. Licheniformis Cdps Yvmc-Blic In
Complex With Ches
pdb|3OQJ|A Chain A, Crystal Structure Of B. Licheniformis Cdps Yvmc-Blic In
Complex With Capso
pdb|3OQJ|B Chain B, Crystal Structure Of B. Licheniformis Cdps Yvmc-Blic In
Complex With Capso
Length = 257
Score = 27.7 bits (60), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 7/53 (13%)
Query: 45 PYGKLEKTLQVIRKRLNRPLTLSEKILYSHIDDPEK----QDIERGVSYLRLR 93
P+GK E+ +RK ++R +EK L +H +PE D +Y LR
Sbjct: 81 PHGKAERK---VRKEVSRNRRFAEKALEAHGGNPEDIHTFSDFANQTAYRNLR 130
>pdb|3OQI|B Chain B, Crystal Structure Of B. Licheniformis Cdps Yvmc-Blic In
Complex With Ches
Length = 257
Score = 27.3 bits (59), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 7/53 (13%)
Query: 45 PYGKLEKTLQVIRKRLNRPLTLSEKILYSHIDDPEK----QDIERGVSYLRLR 93
P+GK E+ +RK ++R +EK L +H +PE D +Y LR
Sbjct: 81 PHGKAERK---VRKEVSRNRRFAEKALEAHGGNPEDIHTFSDFANQTAYRNLR 130
>pdb|2PE5|A Chain A, Crystal Structure Of The Lac Repressor Bound To Onpg In
Repressed State
pdb|2PE5|B Chain B, Crystal Structure Of The Lac Repressor Bound To Onpg In
Repressed State
pdb|2PE5|C Chain C, Crystal Structure Of The Lac Repressor Bound To Onpg In
Repressed State
Length = 330
Score = 26.9 bits (58), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 24/44 (54%)
Query: 73 SHIDDPEKQDIERGVSYLRLRPDRVAMQDATAQMAMLQFISSGL 116
SH+ ++ +E ++ L P+RVA Q A Q+ ++ +S L
Sbjct: 27 SHVSAKTREKVEAAMAELNYIPNRVAQQLAGKQLLLIGVATSSL 70
>pdb|4DIN|B Chain B, Novel Localization And Quaternary Structure Of The Pka Ri
Beta Holoenzyme
Length = 381
Score = 25.8 bits (55), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 8/19 (42%), Positives = 15/19 (78%)
Query: 65 TLSEKILYSHIDDPEKQDI 83
+S+ +L++H+DD E+ DI
Sbjct: 131 AISKNVLFAHLDDNERSDI 149
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.134 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,071,073
Number of Sequences: 62578
Number of extensions: 145014
Number of successful extensions: 407
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 389
Number of HSP's gapped (non-prelim): 27
length of query: 149
length of database: 14,973,337
effective HSP length: 90
effective length of query: 59
effective length of database: 9,341,317
effective search space: 551137703
effective search space used: 551137703
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 47 (22.7 bits)