BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14198
(149 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P34455|ACON_CAEEL Probable aconitate hydratase, mitochondrial OS=Caenorhabditis
elegans GN=aco-2 PE=1 SV=2
Length = 777
Score = 149 bits (375), Expect = 7e-36, Method: Composition-based stats.
Identities = 71/104 (68%), Positives = 86/104 (82%), Gaps = 2/104 (1%)
Query: 23 RCFHRTPQSYA-VPMSKFD-KDHLPYGKLEKTLQVIRKRLNRPLTLSEKILYSHIDDPEK 80
R H + ++ V +SKF+ K +LPY KL +T+++++ RL RPLTLSEKILY H+D P+
Sbjct: 17 RALHSSSSIWSKVAISKFEPKSYLPYEKLSQTVKIVKDRLKRPLTLSEKILYGHLDQPKT 76
Query: 81 QDIERGVSYLRLRPDRVAMQDATAQMAMLQFISSGLPRVAVPST 124
QDIERGVSYLRLRPDRVAMQDATAQMAMLQFISSGLP+ AVPST
Sbjct: 77 QDIERGVSYLRLRPDRVAMQDATAQMAMLQFISSGLPKTAVPST 120
>sp|P20004|ACON_BOVIN Aconitate hydratase, mitochondrial OS=Bos taurus GN=ACO2 PE=1 SV=4
Length = 780
Score = 143 bits (361), Expect = 3e-34, Method: Composition-based stats.
Identities = 72/114 (63%), Positives = 87/114 (76%), Gaps = 4/114 (3%)
Query: 15 KLCTAIQPRCFHRTP---QSYAVPMSKFD-KDHLPYGKLEKTLQVIRKRLNRPLTLSEKI 70
+L A+ R +H Q V MS F+ +++ Y LEK + ++RKRLNRPLTLSEKI
Sbjct: 10 RLQKALGARQYHVASVLCQRAKVAMSHFEPNEYIRYDLLEKNINIVRKRLNRPLTLSEKI 69
Query: 71 LYSHIDDPEKQDIERGVSYLRLRPDRVAMQDATAQMAMLQFISSGLPRVAVPST 124
+Y H+DDP Q+IERG +YLRLRPDRVAMQDATAQMAMLQFISSGLP+VAVPST
Sbjct: 70 VYGHLDDPANQEIERGKTYLRLRPDRVAMQDATAQMAMLQFISSGLPKVAVPST 123
>sp|Q9ER34|ACON_RAT Aconitate hydratase, mitochondrial OS=Rattus norvegicus GN=Aco2
PE=1 SV=2
Length = 780
Score = 142 bits (359), Expect = 5e-34, Method: Composition-based stats.
Identities = 72/114 (63%), Positives = 87/114 (76%), Gaps = 4/114 (3%)
Query: 15 KLCTAIQPRCFHRTP---QSYAVPMSKFD-KDHLPYGKLEKTLQVIRKRLNRPLTLSEKI 70
+L A+ R +H Q V MS F+ +++ Y LEK + ++RKRLNRPLTLSEKI
Sbjct: 10 RLQKALGVRQYHVASALCQRAKVAMSHFEPSEYIRYDLLEKNINIVRKRLNRPLTLSEKI 69
Query: 71 LYSHIDDPEKQDIERGVSYLRLRPDRVAMQDATAQMAMLQFISSGLPRVAVPST 124
+Y H+DDP Q+IERG +YLRLRPDRVAMQDATAQMAMLQFISSGLP+VAVPST
Sbjct: 70 VYGHLDDPANQEIERGKTYLRLRPDRVAMQDATAQMAMLQFISSGLPKVAVPST 123
>sp|Q99KI0|ACON_MOUSE Aconitate hydratase, mitochondrial OS=Mus musculus GN=Aco2 PE=1
SV=1
Length = 780
Score = 142 bits (359), Expect = 6e-34, Method: Composition-based stats.
Identities = 72/114 (63%), Positives = 87/114 (76%), Gaps = 4/114 (3%)
Query: 15 KLCTAIQPRCFHRTP---QSYAVPMSKFD-KDHLPYGKLEKTLQVIRKRLNRPLTLSEKI 70
+L A+ R +H Q V MS F+ +++ Y LEK + ++RKRLNRPLTLSEKI
Sbjct: 10 RLQKALGVRQYHVASVLCQRAKVAMSHFEPSEYIRYDLLEKNINIVRKRLNRPLTLSEKI 69
Query: 71 LYSHIDDPEKQDIERGVSYLRLRPDRVAMQDATAQMAMLQFISSGLPRVAVPST 124
+Y H+DDP Q+IERG +YLRLRPDRVAMQDATAQMAMLQFISSGLP+VAVPST
Sbjct: 70 VYGHLDDPANQEIERGKTYLRLRPDRVAMQDATAQMAMLQFISSGLPKVAVPST 123
>sp|P16276|ACON_PIG Aconitate hydratase, mitochondrial OS=Sus scrofa GN=ACO2 PE=1 SV=1
Length = 781
Score = 142 bits (357), Expect = 1e-33, Method: Composition-based stats.
Identities = 72/114 (63%), Positives = 87/114 (76%), Gaps = 4/114 (3%)
Query: 15 KLCTAIQPRCFHRTP---QSYAVPMSKFD-KDHLPYGKLEKTLQVIRKRLNRPLTLSEKI 70
+L A+ R +H Q V MS F+ +++ Y LEK + ++RKRLNRPLTLSEKI
Sbjct: 10 RLQKALGVRQYHVASVLCQRAKVAMSHFEPHEYIRYDLLEKNIDIVRKRLNRPLTLSEKI 69
Query: 71 LYSHIDDPEKQDIERGVSYLRLRPDRVAMQDATAQMAMLQFISSGLPRVAVPST 124
+Y H+DDP Q+IERG +YLRLRPDRVAMQDATAQMAMLQFISSGLP+VAVPST
Sbjct: 70 VYGHLDDPANQEIERGKTYLRLRPDRVAMQDATAQMAMLQFISSGLPKVAVPST 123
>sp|Q99798|ACON_HUMAN Aconitate hydratase, mitochondrial OS=Homo sapiens GN=ACO2 PE=1
SV=2
Length = 780
Score = 140 bits (354), Expect = 2e-33, Method: Composition-based stats.
Identities = 72/114 (63%), Positives = 86/114 (75%), Gaps = 4/114 (3%)
Query: 15 KLCTAIQPRCFHRTP---QSYAVPMSKFD-KDHLPYGKLEKTLQVIRKRLNRPLTLSEKI 70
+L A+ R +H Q V MS F+ +++ Y LEK + ++RKRLNRPLTLSEKI
Sbjct: 10 RLQKALGVRQYHVASVLCQRAKVAMSHFEPNEYIHYDLLEKNINIVRKRLNRPLTLSEKI 69
Query: 71 LYSHIDDPEKQDIERGVSYLRLRPDRVAMQDATAQMAMLQFISSGLPRVAVPST 124
+Y H+DDP Q+IERG SYLRLRPDRVAMQDATAQMAMLQFISSGL +VAVPST
Sbjct: 70 VYGHLDDPASQEIERGKSYLRLRPDRVAMQDATAQMAMLQFISSGLSKVAVPST 123
>sp|O13966|ACON_SCHPO Aconitate hydratase, mitochondrial OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC24C9.06c PE=3 SV=2
Length = 789
Score = 134 bits (336), Expect = 3e-31, Method: Composition-based stats.
Identities = 61/92 (66%), Positives = 77/92 (83%), Gaps = 1/92 (1%)
Query: 34 VPMSKFDKDH-LPYGKLEKTLQVIRKRLNRPLTLSEKILYSHIDDPEKQDIERGVSYLRL 92
V MS F+K+ + Y +++ L++++KRLNRPLT SEKILY H+DDP QDIERGVSYL+L
Sbjct: 39 VAMSNFEKNKFINYQRIKDNLEIVKKRLNRPLTYSEKILYGHLDDPVNQDIERGVSYLKL 98
Query: 93 RPDRVAMQDATAQMAMLQFISSGLPRVAVPST 124
RPDRVA QDATAQMA+LQF+S+G+P VAVP T
Sbjct: 99 RPDRVACQDATAQMAILQFMSAGMPEVAVPVT 130
>sp|P19414|ACON_YEAST Aconitate hydratase, mitochondrial OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=ACO1 PE=1 SV=2
Length = 778
Score = 124 bits (311), Expect = 2e-28, Method: Composition-based stats.
Identities = 56/85 (65%), Positives = 69/85 (81%)
Query: 40 DKDHLPYGKLEKTLQVIRKRLNRPLTLSEKILYSHIDDPEKQDIERGVSYLRLRPDRVAM 99
D + Y + +TL ++RKRLNRP T +EKILY H+DDP QDI+RGVSYL+LRPDRVA
Sbjct: 35 DHSFINYKQNVETLDIVRKRLNRPFTYAEKILYGHLDDPHGQDIQRGVSYLKLRPDRVAC 94
Query: 100 QDATAQMAMLQFISSGLPRVAVPST 124
QDATAQMA+LQF+S+GLP+VA P T
Sbjct: 95 QDATAQMAILQFMSAGLPQVAKPVT 119
>sp|P82611|ACON_CANAL Aconitate hydratase, mitochondrial OS=Candida albicans (strain
SC5314 / ATCC MYA-2876) GN=ACO1 PE=1 SV=2
Length = 777
Score = 122 bits (305), Expect = 9e-28, Method: Composition-based stats.
Identities = 52/79 (65%), Positives = 68/79 (86%)
Query: 46 YGKLEKTLQVIRKRLNRPLTLSEKILYSHIDDPEKQDIERGVSYLRLRPDRVAMQDATAQ 105
Y K + +++++ RLNRPLT +EK+LY H+DDP Q+IERGVSYL+LRPDRVA QDATAQ
Sbjct: 42 YKKHLENVEIVKSRLNRPLTYAEKLLYGHLDDPHNQEIERGVSYLKLRPDRVACQDATAQ 101
Query: 106 MAMLQFISSGLPRVAVPST 124
MA+LQF+S+G+P+VA PST
Sbjct: 102 MAILQFMSAGIPQVATPST 120
>sp|P49609|ACON_GRAGA Aconitate hydratase, mitochondrial OS=Gracilaria gracilis PE=3 SV=1
Length = 779
Score = 109 bits (273), Expect = 5e-24, Method: Composition-based stats.
Identities = 51/105 (48%), Positives = 74/105 (70%), Gaps = 4/105 (3%)
Query: 23 RCFHRTPQSYAVPMSKFDKDHL---PYGKLEKTLQVIRKRLNRPLTLSEKILYSHIDDPE 79
R F + + PMS + + Y ++ L +R +LNRPLTL+EK+LY H+DDPE
Sbjct: 18 RAFRVSAAARQTPMSPLEAHNELEPVYAAIDDRLNTVRSKLNRPLTLAEKVLYGHLDDPE 77
Query: 80 KQDIERGVSYLRLRPDRVAMQDATAQMAMLQFISSGLPRVAVPST 124
+ + RG ++L+LRP+RVA+QDATAQMA++QF++S P+VAVPST
Sbjct: 78 RVPV-RGETFLKLRPERVALQDATAQMALIQFMASARPQVAVPST 121
>sp|Q54XS2|ACON_DICDI Probable aconitate hydratase, mitochondrial OS=Dictyostelium
discoideum GN=aco2 PE=3 SV=1
Length = 771
Score = 107 bits (268), Expect = 2e-23, Method: Composition-based stats.
Identities = 52/100 (52%), Positives = 75/100 (75%), Gaps = 3/100 (3%)
Query: 27 RTPQSYA-VPMSKFDKDH-LPYGKLEKTLQVIRKRLNRPLTLSEKILYSHIDDPEKQDIE 84
R+ +S++ V MS + + L Y ++ L+ R N+PLTL+EKI+Y H++DP + +E
Sbjct: 12 RSTRSFSTVSMSPLEPNKKLNYEGIDAKLKQFRLHHNKPLTLAEKIIYGHLEDPSTK-VE 70
Query: 85 RGVSYLRLRPDRVAMQDATAQMAMLQFISSGLPRVAVPST 124
RG++YL+L PDRVAMQDATAQMA+LQF+S+GLP AVP+T
Sbjct: 71 RGITYLKLHPDRVAMQDATAQMAVLQFMSAGLPETAVPTT 110
>sp|P39533|ACON2_YEAST Probable aconitate hydratase 2 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=ACO2 PE=1 SV=1
Length = 789
Score = 90.5 bits (223), Expect = 3e-18, Method: Composition-based stats.
Identities = 47/87 (54%), Positives = 63/87 (72%), Gaps = 7/87 (8%)
Query: 45 PYGKLEKTLQVIRKRLNR-PLTLSEKILYSHIDDPEKQ----DIE--RGVSYLRLRPDRV 97
PY KL L I++ N PLTL+EKILYSH+ DPE+ D+ RG YL+L PDRV
Sbjct: 34 PYAKLLTNLDKIKQITNNAPLTLAEKILYSHLCDPEESITSSDLSTIRGNKYLKLNPDRV 93
Query: 98 AMQDATAQMAMLQFISSGLPRVAVPST 124
AMQDA+AQMA+LQF+++GL + +VP++
Sbjct: 94 AMQDASAQMALLQFMTTGLNQTSVPAS 120
>sp|Q9P7D4|ACON2_SCHPO Probable aconitate hydratase 2 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=SPBP4H10.15 PE=3 SV=3
Length = 918
Score = 85.5 bits (210), Expect = 1e-16, Method: Composition-based stats.
Identities = 46/88 (52%), Positives = 62/88 (70%), Gaps = 9/88 (10%)
Query: 45 PYGKLEKTLQVIRKRL-NRPLTLSEKILYSHIDDPEKQ-------DIERGVSYLRLRPDR 96
PY KL LQ +RK L + LTL+EK+LYSH+ +PE+ DI RG YL+L PDR
Sbjct: 43 PYEKLMGKLQQVRKFLPGQKLTLAEKVLYSHLVNPEESFSGVSPSDI-RGSLYLKLNPDR 101
Query: 97 VAMQDATAQMAMLQFISSGLPRVAVPST 124
VAMQDA+AQMA+LQF++ GL + +P++
Sbjct: 102 VAMQDASAQMALLQFMTCGLEKTMIPAS 129
>sp|B1YMR6|ATPA_EXIS2 ATP synthase subunit alpha OS=Exiguobacterium sibiricum (strain DSM
17290 / JCM 13490 / 255-15) GN=atpA PE=3 SV=1
Length = 502
Score = 32.7 bits (73), Expect = 0.81, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 33/53 (62%), Gaps = 6/53 (11%)
Query: 50 EKTLQVIRKRLNRPLTLSEK--ILYS----HIDDPEKQDIERGVSYLRLRPDR 96
E+T++V+++ LN+PLT+ ++ I+Y+ H+DD DI R L L D+
Sbjct: 414 ERTVEVLKQDLNQPLTVDKQVIIIYALTRGHLDDVAVSDIRRFEKELNLWLDQ 466
>sp|Q7Z5J8|ANKAR_HUMAN Ankyrin and armadillo repeat-containing protein OS=Homo sapiens
GN=ANKAR PE=2 SV=3
Length = 1434
Score = 32.0 bits (71), Expect = 1.2, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 24/35 (68%), Gaps = 2/35 (5%)
Query: 58 KRLNRPLTLSEKILYSHIDDPEKQDIERGVSYLRL 92
+RL + L L +KI+ H + +K+DI RG+ YL+L
Sbjct: 286 QRLQQRLYLQKKIIQKHFE--KKKDIRRGIGYLKL 318
>sp|Q7U326|TRMA_HELHP tRNA (uracil(54)-C(5))-methyltransferase OS=Helicobacter hepaticus
(strain ATCC 51449 / 3B1) GN=trmA PE=3 SV=1
Length = 404
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/121 (21%), Positives = 51/121 (42%), Gaps = 2/121 (1%)
Query: 25 FHRTPQSYAVPMSKFDKDHLPYGKLEKTLQVIRKRLNRPLTLSEKILYSHIDDPEKQDIE 84
+H++ S+ ++ + L Y L + +I + N LS I+ H+ E
Sbjct: 146 YHKSLDSHWESLALKIQKELEY-TLNTNIHIIGRSKNHKHILSNDIICEHLTLFANTPKE 204
Query: 85 RGVSYLRLRPDRVAMQDATAQMAMLQFISSGLPRVAVPSTNDSIVPLPCRRKSSTLTLMT 144
R ++ + + R + ML+FI S L + P T ++ L C + T+ L +
Sbjct: 205 RTYTFFK-QESRFCQPNPFINTQMLEFIVSALSSIYTPQTPCDMLELYCGSGNFTIPLAS 263
Query: 145 L 145
+
Sbjct: 264 I 264
>sp|Q1AVC5|LEUC2_RUBXD 3-isopropylmalate dehydratase large subunit 2 OS=Rubrobacter
xylanophilus (strain DSM 9941 / NBRC 16129) GN=leuC2
PE=3 SV=1
Length = 424
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 31/63 (49%), Gaps = 8/63 (12%)
Query: 63 PLTLSEKILYSH--IDDPEKQDIERGVSYLRLRPDRVAMQDATAQMAMLQFISSGLPRVA 120
P TL+EK+L SH +DD DI + +R D V D + +A Q G+ RV
Sbjct: 2 PHTLAEKLLISHSEVDDASPGDI------IMVRCDLVMANDVSGPVAFRQMERMGVQRVF 55
Query: 121 VPS 123
PS
Sbjct: 56 DPS 58
>sp|B8J4F9|LEUC_DESDA 3-isopropylmalate dehydratase large subunit OS=Desulfovibrio
desulfuricans (strain ATCC 27774 / DSM 6949) GN=leuC
PE=3 SV=1
Length = 420
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Query: 65 TLSEKILYSHIDDPEKQDIERGVSYLRLRPDRVAMQDATAQMAMLQFISSGLPRV 119
TL++KIL +H DD +QD + ++ R V D T +A+ F G +V
Sbjct: 4 TLAQKILQAHTDDAVEQDGQ----IVQCRVSMVLANDITGPLAIKSFYGMGAKKV 54
>sp|Q57733|HSPS_METJA Small heat shock protein HSP16.5 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ0285 PE=1 SV=1
Length = 147
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 45/89 (50%), Gaps = 12/89 (13%)
Query: 40 DKDHLPYGKLEKTLQVIRKRLNRPLTLSEKILYSHIDDPEKQDIERGVSYLRLRPDRVAM 99
+K+ + + TL++ KR +T SE+I+YS I PE+++I R + P V
Sbjct: 64 NKEDIILNAVGDTLEIRAKRSPLMITESERIIYSEI--PEEEEIYRTIKL----PATVKE 117
Query: 100 QDATAQMAMLQFISSGLPRVAVPSTNDSI 128
++A+A+ +G+ V +P SI
Sbjct: 118 ENASAKF------ENGVLSVILPKAESSI 140
>sp|B2GV52|BL1S5_RAT Biogenesis of lysosome-related organelles complex 1 subunit 5
OS=Rattus norvegicus GN=Bloc1s5 PE=1 SV=1
Length = 187
Score = 29.3 bits (64), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 6/68 (8%)
Query: 47 GKLEKTLQVIR------KRLNRPLTLSEKILYSHIDDPEKQDIERGVSYLRLRPDRVAMQ 100
G LE+TLQ ++ RL + +K++ H+ EKQ + + +LR +P R A
Sbjct: 100 GGLEETLQRLQAATDSIHRLQQREQERKKVINDHLTASEKQRMLQWEEFLRGQPQRRAEV 159
Query: 101 DATAQMAM 108
DA + AM
Sbjct: 160 DAEHRKAM 167
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.134 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,561,840
Number of Sequences: 539616
Number of extensions: 1972085
Number of successful extensions: 4278
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 4261
Number of HSP's gapped (non-prelim): 23
length of query: 149
length of database: 191,569,459
effective HSP length: 107
effective length of query: 42
effective length of database: 133,830,547
effective search space: 5620882974
effective search space used: 5620882974
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)