Query psy14198
Match_columns 149
No_of_seqs 156 out of 506
Neff 3.1
Searched_HMMs 46136
Date Fri Aug 16 21:56:10 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14198.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14198hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0453|consensus 100.0 2.6E-30 5.5E-35 239.0 6.7 97 32-129 27-124 (778)
2 TIGR01340 aconitase_mito aconi 99.6 1.8E-16 4E-21 148.6 7.3 89 46-134 1-96 (745)
3 PRK07229 aconitate hydratase; 99.4 5.7E-13 1.2E-17 123.2 5.3 69 62-134 1-70 (646)
4 PRK11413 putative hydratase; P 99.3 3.5E-12 7.6E-17 120.3 4.5 68 60-134 31-98 (751)
5 TIGR01342 acon_putative aconit 99.2 1.9E-11 4.1E-16 113.7 4.9 66 65-134 1-67 (658)
6 TIGR00139 h_aconitase homoacon 98.9 1.5E-09 3.2E-14 102.3 5.0 69 63-133 1-72 (712)
7 PRK00402 3-isopropylmalate deh 98.9 2.7E-09 5.8E-14 95.3 5.4 69 62-135 1-71 (418)
8 TIGR01343 hacA_fam homoaconita 98.7 1.3E-08 2.7E-13 90.9 4.5 59 65-128 1-59 (412)
9 PRK12466 isopropylmalate isome 98.6 4.3E-08 9.2E-13 88.7 5.2 66 62-134 2-69 (471)
10 TIGR02083 LEU2 3-isopropylmala 98.6 3.8E-08 8.3E-13 88.1 4.4 59 64-126 1-59 (419)
11 PRK05478 isopropylmalate isome 98.6 7.9E-08 1.7E-12 86.8 5.1 66 62-134 1-68 (466)
12 PTZ00092 aconitate hydratase-l 98.5 7.4E-08 1.6E-12 93.0 3.4 50 84-134 81-141 (898)
13 COG1048 AcnA Aconitase A [Ener 98.4 3.4E-08 7.3E-13 94.9 -0.8 73 60-134 29-126 (861)
14 PF00330 Aconitase: Aconitase 98.4 1.4E-07 2.9E-12 85.0 2.7 65 65-132 1-66 (465)
15 TIGR01341 aconitase_1 aconitat 98.4 1.8E-07 3.8E-12 90.3 3.3 47 88-134 60-117 (876)
16 PRK09277 aconitate hydratase; 98.4 2E-07 4.3E-12 90.0 3.5 50 84-134 75-135 (888)
17 TIGR02333 2met_isocit_dHY 2-me 98.3 2.1E-07 4.7E-12 89.5 1.2 45 85-132 65-122 (858)
18 TIGR02086 IPMI_arch 3-isopropy 98.3 7.4E-07 1.6E-11 79.7 4.3 65 64-134 1-67 (412)
19 cd01581 AcnB Aconitate hydrata 98.3 7.1E-07 1.5E-11 80.5 4.0 52 66-122 1-52 (436)
20 TIGR00170 leuC 3-isopropylmala 98.2 1.3E-06 2.9E-11 79.0 4.3 64 63-133 2-67 (465)
21 TIGR00117 acnB aconitate hydra 98.1 2.4E-06 5.3E-11 82.3 4.3 60 61-124 369-428 (844)
22 PRK09238 bifunctional aconitat 98.1 3.5E-06 7.6E-11 81.2 4.5 52 61-116 368-419 (835)
23 PLN00070 aconitate hydratase 98.0 2.3E-06 5.1E-11 83.2 1.2 47 85-132 114-171 (936)
24 PLN00094 aconitate hydratase 2 97.8 1.9E-05 4.1E-10 77.0 4.3 54 61-117 441-494 (938)
25 PRK12881 acnA aconitate hydrat 97.8 1.1E-05 2.4E-10 78.2 2.7 48 85-133 75-133 (889)
26 COG0065 LeuC 3-isopropylmalate 97.1 0.00051 1.1E-08 62.4 4.3 59 63-126 2-60 (423)
27 cd01584 AcnA_Mitochondrial Aco 96.5 0.0018 4E-08 58.3 2.9 38 96-133 1-38 (412)
28 cd01585 AcnA_Bact Aconitase ca 95.4 0.013 2.8E-07 52.4 3.0 40 95-134 1-41 (380)
29 cd01351 Aconitase Aconitase ca 92.4 0.087 1.9E-06 46.9 2.2 34 96-129 1-35 (389)
30 cd01583 IPMI 3-isopropylmalate 84.8 0.69 1.5E-05 41.6 2.4 38 96-133 1-40 (382)
31 cd01582 Homoaconitase Homoacon 84.5 0.68 1.5E-05 41.5 2.3 36 97-133 2-39 (363)
32 cd01586 AcnA_IRP Aconitase A c 67.4 3.3 7.1E-05 37.9 1.7 41 96-136 1-52 (404)
33 KOG0452|consensus 51.0 7.8 0.00017 38.2 1.2 28 86-114 76-103 (892)
34 COG1049 AcnB Aconitase B [Ener 45.4 13 0.00029 36.7 1.9 44 61-108 370-413 (852)
35 PF11822 DUF3342: Domain of un 43.9 17 0.00036 32.5 2.1 28 104-131 25-57 (317)
36 PRK10515 hypothetical protein; 26.3 66 0.0014 24.3 2.5 22 48-69 18-39 (90)
37 PF11656 DUF3811: YjbD family 25.9 67 0.0015 24.1 2.5 22 48-69 16-37 (87)
No 1
>KOG0453|consensus
Probab=99.96 E-value=2.6e-30 Score=239.05 Aligned_cols=97 Identities=63% Similarity=0.957 Sum_probs=94.2
Q ss_pred CcccCCCCCCCCCchhhHHHHHHHHHHhhCC-CCchhHHHhhhcCCCCCccccccCcceeeeCCcchhhcccchhhHHHH
Q psy14198 32 YAVPMSKFDKDHLPYGKLEKTLQVIRKRLNR-PLTLSEKILYSHIDDPEKQDIERGVSYLRLRPDRVAMQDATAQMAMLQ 110 (149)
Q Consensus 32 ~~v~~s~~d~~~~~Y~~~~~~l~~vr~~l~r-pLTLaEKIL~sHL~~~~~~~~~rG~~YI~LrpDRva~QDATAqMAlLQ 110 (149)
.+++|+.|++. .+|+++..++..+|+++++ |+||+|||||+|++++++++++||.+|+.|+||||+|||||||||+||
T Consensus 27 ~~~~~~~~~~~-i~y~~l~~~~~~v~k~l~~~p~tl~EKIlyshl~~p~~~~i~Rg~~Yl~lrPdrva~qDasaqma~Lq 105 (778)
T KOG0453|consen 27 FKVAMSCFEPS-IPYKKLLTRLFIVKKRLNKPPLTLTEKILYSHLDNPPEQKIVRGGSYLKLRPDRVAMQDASAQMALLQ 105 (778)
T ss_pred hhhHhhhcccC-CcHHHhhhhHHHHHHHhcCCCchhhHHHHHhhccCCcccceecccceEEEcccceecccchhhHHHHH
Confidence 68999999987 7899999999999999999 799999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCccccccceeecc
Q psy14198 111 FISSGLPRVAVPSTNDSIV 129 (149)
Q Consensus 111 Fma~Gl~rVaVPtSVHC~~ 129 (149)
||++|+++|+||++|||+.
T Consensus 106 Fms~Gl~kvavPstIhCdh 124 (778)
T KOG0453|consen 106 FMSSGLKKVAVPSTIHCDH 124 (778)
T ss_pred HHhcCcccccCCceEEecc
Confidence 9999999999999999997
No 2
>TIGR01340 aconitase_mito aconitate hydratase, mitochondrial. This model represents mitochondrial forms of the TCA cycle enzyme aconitate hydratase, also known as aconitase and citrate hydro-lyase.
Probab=99.65 E-value=1.8e-16 Score=148.60 Aligned_cols=89 Identities=64% Similarity=0.983 Sum_probs=78.9
Q ss_pred hhhHHHHHHHHHHhhC-CCCchhHHHhhhcCCCCCc----ccc--ccCcceeeeCCcchhhcccchhhHHHHHHHhCCCc
Q psy14198 46 YGKLEKTLQVIRKRLN-RPLTLSEKILYSHIDDPEK----QDI--ERGVSYLRLRPDRVAMQDATAQMAMLQFISSGLPR 118 (149)
Q Consensus 46 Y~~~~~~l~~vr~~l~-rpLTLaEKIL~sHL~~~~~----~~~--~rG~~YI~LrpDRva~QDATAqMAlLQFma~Gl~r 118 (149)
|+++.++++++|++++ +|+||+||||+.|+.++.. ++. .+|.++|.++|||+++||+||+||++||+++|.++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~Tl~EKIl~~h~~~~~~~~~~~~~~~v~~g~~v~~~~d~v~~~D~tg~~ai~~f~~~g~~~ 80 (745)
T TIGR01340 1 YEKLYNNLDEVRRRLNSRPLTLAEKILYSHLDDPEESLLSQDIGDVRGKSYLKLRPDRVAMQDASAQMALLQFMTCGLPQ 80 (745)
T ss_pred ChhHHHHHHHHHHhcCCCCcCHHHHHHHHHhCCcccccccccccccCCCCEEEEeccEEEEeccccHHHHHHHHHcCCCC
Confidence 7889999999999999 9999999999999987631 111 36666799999999999999999999999999999
Q ss_pred cccccceeeccccccc
Q psy14198 119 VAVPSTNDSIVPLPCR 134 (149)
Q Consensus 119 VaVPtSVHC~~~~~~~ 134 (149)
|.+|..|+||-..|+.
T Consensus 81 v~~P~~v~~DH~~~~~ 96 (745)
T TIGR01340 81 VAVPASIHCDHLIVGQ 96 (745)
T ss_pred CCCCCeEEeCCCCccc
Confidence 9999999999988765
No 3
>PRK07229 aconitate hydratase; Validated
Probab=99.36 E-value=5.7e-13 Score=123.23 Aligned_cols=69 Identities=41% Similarity=0.471 Sum_probs=64.2
Q ss_pred CCCchhHHHhhhcCCCCCccccccCcceeeeCCcchhhcccchhhHHHHHHHhCCCccccccce-eeccccccc
Q psy14198 62 RPLTLSEKILYSHIDDPEKQDIERGVSYLRLRPDRVAMQDATAQMAMLQFISSGLPRVAVPSTN-DSIVPLPCR 134 (149)
Q Consensus 62 rpLTLaEKIL~sHL~~~~~~~~~rG~~YI~LrpDRva~QDATAqMAlLQFma~Gl~rVaVPtSV-HC~~~~~~~ 134 (149)
+|+||+||||++|+.+++ +++|++ +.++|||+++||+|++||+.+|+++|.+++.+|.++ +||-..|+.
T Consensus 1 m~~Tl~eKIl~~h~~~~~---v~~G~~-v~~~vd~v~~~D~t~~~a~~~~~~~G~~~~~~p~~~~~~DH~~~~~ 70 (646)
T PRK07229 1 MGLTLTEKILYAHLVEGE---LEPGEE-IAIRIDQTLTQDATGTMAYLQFEAMGLDRVKTELSVQYVDHNLLQA 70 (646)
T ss_pred CCcCHHHHHHHHhcCCCC---CCCCCE-EEEECcEEEEeccchHHHHHHHHHcCCCcCCCCCeEEECCCCCCCC
Confidence 479999999999998765 889988 999999999999999999999999999999999999 999877765
No 4
>PRK11413 putative hydratase; Provisional
Probab=99.26 E-value=3.5e-12 Score=120.30 Aligned_cols=68 Identities=22% Similarity=0.194 Sum_probs=61.7
Q ss_pred hCCCCchhHHHhhhcCCCCCccccccCcceeeeCCcchhhcccchhhHHHHHHHhCCCccccccceeeccccccc
Q psy14198 60 LNRPLTLSEKILYSHIDDPEKQDIERGVSYLRLRPDRVAMQDATAQMAMLQFISSGLPRVAVPSTNDSIVPLPCR 134 (149)
Q Consensus 60 l~rpLTLaEKIL~sHL~~~~~~~~~rG~~YI~LrpDRva~QDATAqMAlLQFma~Gl~rVaVPtSVHC~~~~~~~ 134 (149)
..+.+|++||||++|+.++ +| ++|.+++|++++||+||+|++.+|+++|+++|++|..+|||-..||.
T Consensus 31 ~~~~~TlaeKIL~~h~~~~------~g-~~v~~~vD~~~~~D~t~~~~~~~f~~~G~~~vp~~~v~~~DH~~~~~ 98 (751)
T PRK11413 31 EAKKGTIAWSILSSHNTSG------NM-DKLKIKFDSLASHDITFVGIIQTAKASGMERFPLPYVLTNCHNSLCA 98 (751)
T ss_pred HHhhCCHHHHHHHHhhCCC------CC-CEEEEEcceeeeehhhHHHHHHHHHHcCCCcCCCCEEEECCCCCcCC
Confidence 3567899999999999753 34 35999999999999999999999999999999999999999999996
No 5
>TIGR01342 acon_putative aconitate hydratase, putative, Aquifex type. This model represents a small family of proteins homologous (and likely functionally equivalent to) aconitase 1. Members are found, so far in the anaerobe Clostridium acetobutylicum, in the microaerophilic, early-branching bacterium Aquifex aeolicus, and in the halophilic archaeon Halobacterium sp. NRC-1. No member is experimentally characterized.
Probab=99.18 E-value=1.9e-11 Score=113.74 Aligned_cols=66 Identities=26% Similarity=0.289 Sum_probs=58.8
Q ss_pred chhHHHhhhcCCCCCccccccCcceeeeCCcchhhcccchhhHHHHHHHhCCCccccccc-eeeccccccc
Q psy14198 65 TLSEKILYSHIDDPEKQDIERGVSYLRLRPDRVAMQDATAQMAMLQFISSGLPRVAVPST-NDSIVPLPCR 134 (149)
Q Consensus 65 TLaEKIL~sHL~~~~~~~~~rG~~YI~LrpDRva~QDATAqMAlLQFma~Gl~rVaVPtS-VHC~~~~~~~ 134 (149)
||+||||++|+.++. +++|+ ++.++|||+++||+||+||+++|+++|.++|.++.+ ++||-..|+.
T Consensus 1 Tl~eKIl~~h~~~~~---~~~G~-~v~~~vD~v~~hD~Tg~~a~~~~~~~g~~~v~~~~~~~~~DH~~~~~ 67 (658)
T TIGR01342 1 TLAEKIIDDHLVEGD---LEPGE-EIAIEIDQTLSQDATGTMCWLEFEALEMDEVKTELAAQYCDHNMLQF 67 (658)
T ss_pred CHHHHHHHHhhCCCC---CCCCC-EEEEEccEEEEeccchHHHHHHHHHcCCCccCCCCeEEECCCCCCCC
Confidence 799999999999875 78998 599999999999999999999999999999997754 6888776664
No 6
>TIGR00139 h_aconitase homoaconitase. Homoaconitase, aconitase, and 3-isopropylmalate dehydratase have similar overall structures, but 3-isopropylmalate dehydratase is split into large (leuC) and small (leuD) chains in eubacteria. Several pairs of archaeal proteins resemble leuC and leuD over their lengths but are even closer to the respective domains of homoaconitase, and their identity is uncertain.
Probab=98.89 E-value=1.5e-09 Score=102.29 Aligned_cols=69 Identities=19% Similarity=0.264 Sum_probs=55.8
Q ss_pred CCchhHHHhhhcCCCC-CccccccCcceeeeCCcchhhcccchhhHHHHHHHhCCCccccccce--eecccccc
Q psy14198 63 PLTLSEKILYSHIDDP-EKQDIERGVSYLRLRPDRVAMQDATAQMAMLQFISSGLPRVAVPSTN--DSIVPLPC 133 (149)
Q Consensus 63 pLTLaEKIL~sHL~~~-~~~~~~rG~~YI~LrpDRva~QDATAqMAlLQFma~Gl~rVaVPtSV--HC~~~~~~ 133 (149)
|+||+||||..|++.. +.....+|+ ||.++||++++||+|++| ++||+++|.++|..|..+ .+|-..|-
T Consensus 1 ~~Tl~EKIl~~h~v~~~~g~~v~~G~-~i~i~vD~~l~hD~t~p~-~~~~~~~g~~~V~~p~~~v~~~DH~v~~ 72 (712)
T TIGR00139 1 GQNLTEKIVQKYAVGLPEGKFVHSGD-YVSIKPAHCMSHDNSWPC-ALKFMGIGASKIHNPDQIVMTLDHDIQN 72 (712)
T ss_pred CCCHHHHHHHHhcccccCCcccCCCC-EEEEecCEEEEEeccHHH-HHHHHHcCCCccCCCCCEEEEcCCCCCC
Confidence 5899999999999542 112356884 599999999999999999 699999999999999544 66655554
No 7
>PRK00402 3-isopropylmalate dehydratase large subunit; Reviewed
Probab=98.86 E-value=2.7e-09 Score=95.30 Aligned_cols=69 Identities=28% Similarity=0.281 Sum_probs=60.0
Q ss_pred CCCchhHHHhhhcCCCCCccccccCcceeeeCCcchhhcccchhhHHHHHHHhCCCccccccce--eecccccccc
Q psy14198 62 RPLTLSEKILYSHIDDPEKQDIERGVSYLRLRPDRVAMQDATAQMAMLQFISSGLPRVAVPSTN--DSIVPLPCRR 135 (149)
Q Consensus 62 rpLTLaEKIL~sHL~~~~~~~~~rG~~YI~LrpDRva~QDATAqMAlLQFma~Gl~rVaVPtSV--HC~~~~~~~~ 135 (149)
.|+||+||||.+|...+ ..+|+. +.+++|++++||+|++|++.+|+++|.++|..|..+ +||-..|+..
T Consensus 1 m~~Tl~eKIl~~h~~~~----v~~G~~-v~v~vD~~~~hD~t~p~a~~~~~~~g~~~v~~P~~~~~~~DH~~p~~~ 71 (418)
T PRK00402 1 MGMTLAEKILARHSGRD----VSPGDI-VEAKVDLVMAHDITGPLAIKEFEKIGGDKVFDPSKIVIVFDHFVPAKD 71 (418)
T ss_pred CCcCHHHHHHHHhcCCC----CCCCCE-EEEECCEEEEecccHHHHHHHHHHcCCCccCCCCcEEEECCCCCCCCC
Confidence 37899999999998764 368855 999999999999999999999999999999999554 8888777753
No 8
>TIGR01343 hacA_fam homoaconitate hydratase family protein. This model represents a subfamily of proteins consisting of aconitase, homoaconitase, 3-isopropylmalate dehydratase, and uncharacterized proteins. The majority of the members of this family have been designated as 3-isopropylmalate dehydratase large subunit (LeuC) in microbial genome annotation, but the only characterized member is Thermus thermophilus homoaconitase, an enzyme of a non-aspartate pathway of Lys biosynthesis.
Probab=98.71 E-value=1.3e-08 Score=90.88 Aligned_cols=59 Identities=27% Similarity=0.346 Sum_probs=53.6
Q ss_pred chhHHHhhhcCCCCCccccccCcceeeeCCcchhhcccchhhHHHHHHHhCCCccccccceeec
Q psy14198 65 TLSEKILYSHIDDPEKQDIERGVSYLRLRPDRVAMQDATAQMAMLQFISSGLPRVAVPSTNDSI 128 (149)
Q Consensus 65 TLaEKIL~sHL~~~~~~~~~rG~~YI~LrpDRva~QDATAqMAlLQFma~Gl~rVaVPtSVHC~ 128 (149)
|++||||.+|..+ + ..+|+. +.+++|++++||.|++||+.+|+++|.++|..|..|...
T Consensus 1 Tl~eKIl~~h~~~-~---v~~G~~-v~~~vD~~~~hD~t~p~a~~~~~~~g~~~v~~P~~v~~~ 59 (412)
T TIGR01343 1 TIAEKILSKHSGK-E---VYAGDL-IVAEIDQAMVHDITAPLAIRRLEEYGIDKVFDPERIVIV 59 (412)
T ss_pred CHHHHHHHHhcCC-c---cCCCCE-EEEECCEEEEecccHHHHHHHHHHcCCCcCCCCCcEEEE
Confidence 7999999999966 3 678975 999999999999999999999999999999999888843
No 9
>PRK12466 isopropylmalate isomerase large subunit; Provisional
Probab=98.62 E-value=4.3e-08 Score=88.67 Aligned_cols=66 Identities=26% Similarity=0.270 Sum_probs=55.5
Q ss_pred CCCchhHHHhhhcCCCCCccccccCcceeeeCCcchhhcccchhhHHHHHHHhCCCcccccccee--eccccccc
Q psy14198 62 RPLTLSEKILYSHIDDPEKQDIERGVSYLRLRPDRVAMQDATAQMAMLQFISSGLPRVAVPSTND--SIVPLPCR 134 (149)
Q Consensus 62 rpLTLaEKIL~sHL~~~~~~~~~rG~~YI~LrpDRva~QDATAqMAlLQFma~Gl~rVaVPtSVH--C~~~~~~~ 134 (149)
+++||+||||..|.... ...| .+.++|||+++||.|+.+|+.+|+++|. +|.-|..++ +|-..|-.
T Consensus 2 m~~Tl~eKI~~~h~~~~----~~~g--~v~~~vD~~~~hD~t~p~a~~~~~~~g~-~v~~P~~~~~~~DH~vp~~ 69 (471)
T PRK12466 2 MPRTLYDKLWDSHTVAR----LDDG--HVLLYIDRHLLNEYTSPQAFSGLRARGR-TVRRPDLTLAVVDHVVPTR 69 (471)
T ss_pred CCcCHHHHHHHHhcCCC----CCCC--EEEEeccEEEEeccccHHHHHHHHHcCC-cccCCCCeEEEeCCCCCCC
Confidence 68999999999998753 3456 5999999999999999999999999995 788898888 55555544
No 10
>TIGR02083 LEU2 3-isopropylmalate dehydratase, large subunit. This model along with TIGR00170 describe clades which consist only of LeuC sequences. Here, the genes from Pyrococcus furiosus, Clostridium acetobutylicum, Thermotoga maritima and others are gene clustered with related genes from the leucine biosynthesis pathway.
Probab=98.60 E-value=3.8e-08 Score=88.12 Aligned_cols=59 Identities=29% Similarity=0.319 Sum_probs=53.3
Q ss_pred CchhHHHhhhcCCCCCccccccCcceeeeCCcchhhcccchhhHHHHHHHhCCCcccccccee
Q psy14198 64 LTLSEKILYSHIDDPEKQDIERGVSYLRLRPDRVAMQDATAQMAMLQFISSGLPRVAVPSTND 126 (149)
Q Consensus 64 LTLaEKIL~sHL~~~~~~~~~rG~~YI~LrpDRva~QDATAqMAlLQFma~Gl~rVaVPtSVH 126 (149)
+||+||||..|....+ ..+|+. +.+++|++.+||.|+.||+.+|+.+|.++|.-|..|=
T Consensus 1 ~Tl~eKIl~~h~~~~~---v~~G~~-v~~~vD~~~~hD~t~p~a~~~f~~~g~~~V~dp~~v~ 59 (419)
T TIGR02083 1 MTMAEKILAQHAGLES---VEPGEL-ILAKLDIVLGNDITTPLAIKAFKEYGGKKVFDPDRVA 59 (419)
T ss_pred CCHHHHHHHHhcCCCC---CCCCCE-EEEECcEEEEEeccHHHHHHHHHHcCCCcCCCCCCEE
Confidence 5999999999997654 778855 9999999999999999999999999999999998773
No 11
>PRK05478 isopropylmalate isomerase large subunit; Validated
Probab=98.55 E-value=7.9e-08 Score=86.79 Aligned_cols=66 Identities=21% Similarity=0.156 Sum_probs=55.1
Q ss_pred CCCchhHHHhhhcCCCCCccccccCcceeeeCCcchhhcccchhhHHHHHHHhCCCcccccccee--eccccccc
Q psy14198 62 RPLTLSEKILYSHIDDPEKQDIERGVSYLRLRPDRVAMQDATAQMAMLQFISSGLPRVAVPSTND--SIVPLPCR 134 (149)
Q Consensus 62 rpLTLaEKIL~sHL~~~~~~~~~rG~~YI~LrpDRva~QDATAqMAlLQFma~Gl~rVaVPtSVH--C~~~~~~~ 134 (149)
+++||+||||..|...+ .+|+. +.+++|++++||+|++||+.+|+.+|. +|.-|..++ ||-..|-.
T Consensus 1 m~~tl~eKIl~~h~~~~-----~~g~~-v~~~vD~~~~hD~t~~~a~~~~~~~g~-~v~~p~~~~~~~DH~v~~~ 68 (466)
T PRK05478 1 MGKTLYDKLWDAHVVHE-----EEDGP-DLLYIDRHLVHEVTSPQAFEGLRLAGR-KVRRPDLTFATMDHNVPTT 68 (466)
T ss_pred CCCCHHHHHHHHhcCCC-----CCCCE-EEEEeccceeecccHHHHHHHHHHcCC-CccCCCCeEEEcCCCCCCC
Confidence 36899999999998764 27766 999999999999999999999999996 677787777 66555543
No 12
>PTZ00092 aconitate hydratase-like protein; Provisional
Probab=98.49 E-value=7.4e-08 Score=92.99 Aligned_cols=50 Identities=20% Similarity=0.259 Sum_probs=44.1
Q ss_pred ccCcceeeeCCcchhhcccchhhHHHHHHHh-------CCC----ccccccceeeccccccc
Q psy14198 84 ERGVSYLRLRPDRVAMQDATAQMAMLQFISS-------GLP----RVAVPSTNDSIVPLPCR 134 (149)
Q Consensus 84 ~rG~~YI~LrpDRva~QDATAqMAlLQFma~-------Gl~----rVaVPtSVHC~~~~~~~ 134 (149)
.+|++ |.|+||||+|||+||+||++||.+| |.| ...||+.+|||-..+-.
T Consensus 81 ~~~~e-i~~~p~Rvl~QD~Tgvpa~vdlaamR~~~~~~g~d~~~inp~vpvdlviDHsvq~d 141 (898)
T PTZ00092 81 KKQIE-IPFKPARVLLQDFTGVPAVVDLAAMRDAMKRLGGDPAKINPLVPVDLVIDHSVQVD 141 (898)
T ss_pred CCCce-eeeccceEEeecccCchHHHHHHHHHHHHHHcCCChhhcCCCCCcceecCCCCCCC
Confidence 35655 9999999999999999999999999 999 88899999999776554
No 13
>COG1048 AcnA Aconitase A [Energy production and conversion]
Probab=98.42 E-value=3.4e-08 Score=94.91 Aligned_cols=73 Identities=22% Similarity=0.144 Sum_probs=61.7
Q ss_pred hCCCCchhHHHhhhcCCCCCcc------ccccCc------ceeeeCCcchhhcccchhhHHHHHHHhCCCccccccce--
Q psy14198 60 LNRPLTLSEKILYSHIDDPEKQ------DIERGV------SYLRLRPDRVAMQDATAQMAMLQFISSGLPRVAVPSTN-- 125 (149)
Q Consensus 60 l~rpLTLaEKIL~sHL~~~~~~------~~~rG~------~YI~LrpDRva~QDATAqMAlLQFma~Gl~rVaVPtSV-- 125 (149)
...+|++++|||+.||+.++.. .+.+|. .+|.++|+||+|||+||+| ++|+.+++..+.++...
T Consensus 29 ~~~~Lp~s~kiL~e~l~r~~d~~~~~i~~~~~w~~~~~~~~ei~~~p~RVvmQD~tgvp--a~vdla~mr~a~~~~g~dp 106 (861)
T COG1048 29 KISKLPYSLKILLENLLRGEDGTEEHIEALARWLPSGKPEKEIAFRPARVVMQDFTGVP--AVVDLAAMRDAMVELGGDP 106 (861)
T ss_pred ccccCChhHHHHHHHhccccccchhHHHHHhccccccCcccccccccceeeeecccCCC--eeEEhhhHHHHHHHhcCCh
Confidence 5689999999999999998632 355663 5699999999999999999 89999999999998888
Q ss_pred -----------eeccccccc
Q psy14198 126 -----------DSIVPLPCR 134 (149)
Q Consensus 126 -----------HC~~~~~~~ 134 (149)
|||-..-|-
T Consensus 107 ~~inP~~pvdLviDHsv~vd 126 (861)
T COG1048 107 AKINPVVPVDLVIDHSVQVD 126 (861)
T ss_pred hhcCCCCcceeeecceeeee
Confidence 888766554
No 14
>PF00330 Aconitase: Aconitase family (aconitate hydratase); InterPro: IPR001030 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. 3-isopropylmalate dehydratase (or isopropylmalate isomerase; 4.2.1.33 from EC) catalyses the stereo-specific isomerisation of 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate. This enzyme performs the second step in the biosynthesis of leucine, and is present in most prokaryotes and many fungal species. The prokaryotic enzyme is a heterodimer composed of a large (LeuC) and small (LeuD) subunit, while the fungal form is a monomeric enzyme. Both forms of isopropylmalate are related and are part of the larger aconitase family []. Aconitases are mostly monomeric proteins which share four domains in common and contain a single, labile [4Fe-4S] cluster. Three structural domains (1, 2 and 3) are tightly packed around the iron-sulphur cluster, while a fourth domain (4) forms a deep active-site cleft. The prokaryotic enzyme is encoded by two adjacent genes, leuC and leuD, corresponding to aconitase domains 1-3 and 4 respectively [, ]. LeuC does not bind an iron-sulphur cluster. It is thought that some prokaryotic isopropylamalate dehydrogenases can also function as homoaconitase 4.2.1.36 from EC, converting cis-homoaconitate to homoisocitric acid in lysine biosynthesis []. Homoaconitase has been identified in higher fungi (mitochondria) and several archaea and one thermophilic species of bacteria, Thermus thermophilus []. This entry represents a region containing 3 domains, each with a 3-layer alpha/beta/alpha topology. This regions represents the [4Fe-4S] cluster-binding region found at the N-terminal of eukaryotic mAcn, cAcn/IPR1 and IRP2, and bacterial AcnA, but in the C-terminal of bacterial AcnB. This domain is also found in the large subunit of isopropylmalate dehydratase (LeuC). More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0008152 metabolic process; PDB: 1L5J_B 1B0M_A 1B0J_A 1B0K_A 7ACN_A 6ACN_A 5ACN_A 3SNP_B 3SN2_A 2B3Y_A ....
Probab=98.41 E-value=1.4e-07 Score=85.03 Aligned_cols=65 Identities=29% Similarity=0.321 Sum_probs=48.8
Q ss_pred chhHHHhhhcCCCCCccccccCcceeeeCCcchhhcccchhhHHHHHHHhCCCccccc-cceeeccccc
Q psy14198 65 TLSEKILYSHIDDPEKQDIERGVSYLRLRPDRVAMQDATAQMAMLQFISSGLPRVAVP-STNDSIVPLP 132 (149)
Q Consensus 65 TLaEKIL~sHL~~~~~~~~~rG~~YI~LrpDRva~QDATAqMAlLQFma~Gl~rVaVP-tSVHC~~~~~ 132 (149)
||+|||+.+|+.... ..+|.++|.++|||+++||.|+.+|+.+|.++|.+....+ +.+.||-..|
T Consensus 1 Tl~EKI~~~h~~~~~---~~~~~~~v~i~~D~~l~hD~Tgp~a~~~l~~~g~~v~~p~~v~~~~DH~vp 66 (465)
T PF00330_consen 1 TLAEKILARHAGREV---VARGGDIVYIRPDRVLLHDITGPPAFKDLRAMGEKVRDPDKVVLVIDHSVP 66 (465)
T ss_dssp -HHHHHHHCCCTHCC---HTTTTSEEEE--SEEEEEHHHHHHHHHHHHHHCHCCHSTTSEEEE--SS--
T ss_pred ChHHHHHHHHhCCCc---cCCCCeEEEEEeceEEeecccCcccchhHHHCCCceecCCCceEEecCccc
Confidence 799999999998766 5677778999999999999999999999999998766555 3345554443
No 15
>TIGR01341 aconitase_1 aconitate hydratase 1. This model represents one form of the TCA cycle enzyme aconitate hydratase, also known as aconitase and citrate hydro-lyase. It is found in bacteria, archaea, and eukaryotic cytosol. It has been shown to act also as an iron-responsive element binding protein in animals and may have the same role in other eukaryotes.
Probab=98.39 E-value=1.8e-07 Score=90.27 Aligned_cols=47 Identities=23% Similarity=0.245 Sum_probs=41.1
Q ss_pred ceeeeCCcchhhcccchhhHHHHHHHh-------CCC----ccccccceeeccccccc
Q psy14198 88 SYLRLRPDRVAMQDATAQMAMLQFISS-------GLP----RVAVPSTNDSIVPLPCR 134 (149)
Q Consensus 88 ~YI~LrpDRva~QDATAqMAlLQFma~-------Gl~----rVaVPtSVHC~~~~~~~ 134 (149)
.+|.|+||||+|||+||+||++||.+| |.| ...||+.+|||-..+-.
T Consensus 60 ~ei~f~p~RvllQD~TGvpa~vdlaAmrda~~~~G~d~~~inp~vPvdlviDHsv~~d 117 (876)
T TIGR01341 60 TEIAFKPARVVMQDFTGVPAVVDLAAMREAMKNLGGDPKKINPLVPVDLVIDHSVQVD 117 (876)
T ss_pred ceeccCchhheeccccCchHHHHHHHHHHHHHHcCCCHHHcCCCCCcceEeCCCCCCC
Confidence 349999999999999999999999988 999 77788888999765543
No 16
>PRK09277 aconitate hydratase; Validated
Probab=98.39 E-value=2e-07 Score=89.99 Aligned_cols=50 Identities=24% Similarity=0.240 Sum_probs=43.5
Q ss_pred ccCcceeeeCCcchhhcccchhhHHHHHHHh-------CCC----ccccccceeeccccccc
Q psy14198 84 ERGVSYLRLRPDRVAMQDATAQMAMLQFISS-------GLP----RVAVPSTNDSIVPLPCR 134 (149)
Q Consensus 84 ~rG~~YI~LrpDRva~QDATAqMAlLQFma~-------Gl~----rVaVPtSVHC~~~~~~~ 134 (149)
++|++ |.|+||||+|||+||+||++||.+| |.+ ...+|..+|||-..+-.
T Consensus 75 ~~~~e-i~f~p~rvl~QD~TGvpa~vdlaamr~a~~~~G~dp~~i~p~vpvdlviDHsv~~d 135 (888)
T PRK09277 75 KPDRE-IPFRPARVVMQDFTGVPAVVDLAAMRDAIADLGGDPAKINPLVPVDLVIDHSVQVD 135 (888)
T ss_pred CCCce-eeeccceeeecccccchHHHHHHHHHHHHHHcCCChhhcCCCCCeEEEeCCCCcCC
Confidence 46666 9999999999999999999999998 777 78999999999865544
No 17
>TIGR02333 2met_isocit_dHY 2-methylisocitrate dehydratase, Fe/S-dependent. Members of this family appear in an operon for the degradation of propionyl-CoA via 2-methylcitrate. This family is homologous to aconitases A and B and appears to act the part as 2-methylisocitrate dehydratase, the enzyme after PrpD and before PrpB. In Escherichia coli, which lacks a member of this family, 2-methylisocitrate dehydratase activity was traced to aconitase B (TIGR00117) (PubMed:12473114).
Probab=98.29 E-value=2.1e-07 Score=89.53 Aligned_cols=45 Identities=27% Similarity=0.364 Sum_probs=38.4
Q ss_pred cCcceeeeCCcchhhcccchhhHHHHHHHhCCCc-------------cccccceeeccccc
Q psy14198 85 RGVSYLRLRPDRVAMQDATAQMAMLQFISSGLPR-------------VAVPSTNDSIVPLP 132 (149)
Q Consensus 85 rG~~YI~LrpDRva~QDATAqMAlLQFma~Gl~r-------------VaVPtSVHC~~~~~ 132 (149)
.+.+ |.++|+||+|||+||+||++|| +++.+ .+||+++|||-..-
T Consensus 65 ~~~e-i~f~P~RV~mqD~Tgvpa~vdl--Aamr~a~~~~g~dp~~inp~vP~dlviDHsv~ 122 (858)
T TIGR02333 65 RDLD-FPWYPARVVCHDILGQTALVDL--AGLRDAIAEKGGDPAQVNPVVPTQLIVDHSLA 122 (858)
T ss_pred CCCe-eccCcceeeeccccCcchhhhH--hhhHHHHHHcCCChhhcCCCCCCeEEeCCcce
Confidence 4556 8999999999999999999999 55555 89999999996543
No 18
>TIGR02086 IPMI_arch 3-isopropylmalate dehydratase, large subunit. This subfamily is a subset of the larger HacA family (Homoaconitate hydratase family, TIGR01343) and is most closely related to the 3-isopropylmalate dehydratase, large subunits which form TIGR00170. This subfamily includes the members of TIGR01343 which are gene clustered with other genes of leucine biosynthesis. The rest of the subfamily includes mainly archaeal species which exhibit two hits to this model. In these cases it is possible that one or the other of the hits does not have a 3-isopropylmalate dehydratase activity but rather one of the other related aconitase-like activities.
Probab=98.28 E-value=7.4e-07 Score=79.71 Aligned_cols=65 Identities=26% Similarity=0.302 Sum_probs=52.9
Q ss_pred CchhHHHhhhcCCCCCccccccCcceeeeCCcchhhcccchhhHHHHHHHhCCCccccccc--eeeccccccc
Q psy14198 64 LTLSEKILYSHIDDPEKQDIERGVSYLRLRPDRVAMQDATAQMAMLQFISSGLPRVAVPST--NDSIVPLPCR 134 (149)
Q Consensus 64 LTLaEKIL~sHL~~~~~~~~~rG~~YI~LrpDRva~QDATAqMAlLQFma~Gl~rVaVPtS--VHC~~~~~~~ 134 (149)
+||+||||..|... +..+|+. +.+++|++++||.|+.||+.+|+.+| .+|.-|.. +.+|-..|..
T Consensus 1 ~Tl~eKIl~~h~~~----~v~~G~~-v~~~vD~~~~hD~t~p~a~~~~~~~g-~~v~~p~~~~~~~DH~~p~~ 67 (412)
T TIGR02086 1 MTLAEKILSEKVGR----PVEAGEI-VEVEVDLAMAHDGTGPLAIETLRELG-ARVEDPEKIVIFFDHVVPPP 67 (412)
T ss_pred CCHHHHHHHHhcCC----ccCCCCE-EEEECCEEEEecccHHHHHHHHHHcC-CcccCCCCEEEECCCCCCCC
Confidence 59999999999843 2678875 99999999999999999999999999 77766644 5555555443
No 19
>cd01581 AcnB Aconitate hydratase B catalyses the formation of cis-aconitate from citrate as part of the TCA cycle. Aconitase B catalytic domain. Aconitate hydratase B catalyses the formation of cis-aconitate from citrate as part of the TCA cycle. Aconitase has an active (4FE-4S) and an inactive (3FE-4S) form. The active cluster is part of the catalytic site that interconverts citrate, cis-aconitase and isocitrate. The domain architecture of aconitase B is different from other aconitases in that the catalytic domain is normally found at C-terminus for other aconitases, but it is at N-terminus for B family. It also has a HEAT domain before domain 4 which plays a role in protein-protein interaction. This alignment is the core domain including domains 1,2 and 3.
Probab=98.27 E-value=7.1e-07 Score=80.45 Aligned_cols=52 Identities=17% Similarity=0.080 Sum_probs=45.2
Q ss_pred hhHHHhhhcCCCCCccccccCcceeeeCCcchhhcccchhhHHHHHHHhCCCccccc
Q psy14198 66 LSEKILYSHIDDPEKQDIERGVSYLRLRPDRVAMQDATAQMAMLQFISSGLPRVAVP 122 (149)
Q Consensus 66 LaEKIL~sHL~~~~~~~~~rG~~YI~LrpDRva~QDATAqMAlLQFma~Gl~rVaVP 122 (149)
++||||..|...++ .++|+. +.+++|++.+||.||+||+.+|+.+|. +|.=|
T Consensus 1 ~~EKIl~~~~~~~~---v~~G~~-v~~~vD~~~~~D~t~p~~~~~f~~~~~-~v~d~ 52 (436)
T cd01581 1 LAQKIVGRACGVKG---VRPGTY-CEPKMTTVGSQDTTGPMTRDELKELAC-LGFSA 52 (436)
T ss_pred ChHHHHHHhcCCCC---CCCCCE-EEEEcCEEEeeccchHHHHHHHHHcCC-cccCC
Confidence 58999999977655 788876 999999999999999999999999988 55333
No 20
>TIGR00170 leuC 3-isopropylmalate dehydratase, large subunit. Several pairs of archaeal proteins resemble the leuC and leuD pair in length and sequence but even more closely resemble the respective domains of homoaconitase, and their identity is uncertain. These homologs are now described by a separate model of subfamily (rather than equivalog) homology type, and the priors and cutoffs for this model have been changed to focus this equivalog family more narrowly.
Probab=98.20 E-value=1.3e-06 Score=78.98 Aligned_cols=64 Identities=27% Similarity=0.303 Sum_probs=50.8
Q ss_pred CCchhHHHhhhcCCCCCccccccCcceeeeCCcchhhcccchhhHHHHHHHhCCCccccc--cceeecccccc
Q psy14198 63 PLTLSEKILYSHIDDPEKQDIERGVSYLRLRPDRVAMQDATAQMAMLQFISSGLPRVAVP--STNDSIVPLPC 133 (149)
Q Consensus 63 pLTLaEKIL~sHL~~~~~~~~~rG~~YI~LrpDRva~QDATAqMAlLQFma~Gl~rVaVP--tSVHC~~~~~~ 133 (149)
++||+||||.+|.... .+|+. +.++||++++||.|+.+|+.+|+.+|. +|.=| .-+.+|-..|-
T Consensus 2 ~~Tl~eKI~~~h~~~~-----~~g~~-v~~~vD~~~~hD~t~~~a~~~~~~~g~-~v~~p~~~~~~~DH~vp~ 67 (465)
T TIGR00170 2 PRTLYEKLFDAHIVYE-----AEGET-PLLYIDRHLIHEVTSPQAFEGLRQAGR-KVRRPQKTFATMDHNIPT 67 (465)
T ss_pred CCCHHHHHHHHhcCCC-----CCCCE-EEEEeeeeeecccchHHHHHHHHHcCC-CcCCCcCEEEEeCCCCCC
Confidence 6899999999998764 36766 889999999999999999999999994 55433 33455555554
No 21
>TIGR00117 acnB aconitate hydratase 2. Aconitate hydratase (aconitase) is an enzyme of the TCA cycle. This model describes aconitase 2, AcnB, which has weak similarity to aconitase 1. It is found almost exclusively in the Proteobacteria.
Probab=98.11 E-value=2.4e-06 Score=82.32 Aligned_cols=60 Identities=17% Similarity=0.130 Sum_probs=50.9
Q ss_pred CCCCchhHHHhhhcCCCCCccccccCcceeeeCCcchhhcccchhhHHHHHHHhCCCccccccc
Q psy14198 61 NRPLTLSEKILYSHIDDPEKQDIERGVSYLRLRPDRVAMQDATAQMAMLQFISSGLPRVAVPST 124 (149)
Q Consensus 61 ~rpLTLaEKIL~sHL~~~~~~~~~rG~~YI~LrpDRva~QDATAqMAlLQFma~Gl~rVaVPtS 124 (149)
++++||+||||..|...+. +.+|+. +..++|.|.+||.||.|++.+|+.+|......+..
T Consensus 369 ~mg~TlaeKIl~~a~G~~~---v~pG~~-v~~~vd~v~sqD~Tgpmt~~~~~~l~~~vfdpd~v 428 (844)
T TIGR00117 369 DKGFTLAQKMVGRACGVKG---IRPGTY-CEPKMTTVGSQDTTGPMTRDELKELACLGFSADLV 428 (844)
T ss_pred CCchhHHHHHHHHhhCCCC---CCCCCE-EEEECcEEeeeccccHHHHHHHHHhCCceECCCcE
Confidence 4678999999999987655 789976 99999999999999999999999999844444433
No 22
>PRK09238 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase; Validated
Probab=98.07 E-value=3.5e-06 Score=81.18 Aligned_cols=52 Identities=19% Similarity=0.218 Sum_probs=46.8
Q ss_pred CCCCchhHHHhhhcCCCCCccccccCcceeeeCCcchhhcccchhhHHHHHHHhCC
Q psy14198 61 NRPLTLSEKILYSHIDDPEKQDIERGVSYLRLRPDRVAMQDATAQMAMLQFISSGL 116 (149)
Q Consensus 61 ~rpLTLaEKIL~sHL~~~~~~~~~rG~~YI~LrpDRva~QDATAqMAlLQFma~Gl 116 (149)
++++||+||||..|.-.+. +.+|+. +..++|.|.+||.||.|++.+|+.+|.
T Consensus 368 ~~g~TlaeKIl~~a~G~~~---v~pG~~-v~~~vd~v~sqD~Tgpmt~~~~~~lg~ 419 (835)
T PRK09238 368 GKGFTLAQKMVGRACGVPG---VRPGTY-CEPKMTTVGSQDTTGPMTRDELKDLAC 419 (835)
T ss_pred CCcccHHHHHHHHhcCCCC---CCCCCE-EEEECCEEEeeccchHHHHHHHHHcCC
Confidence 4678999999999986554 788875 999999999999999999999999997
No 23
>PLN00070 aconitate hydratase
Probab=97.97 E-value=2.3e-06 Score=83.17 Aligned_cols=47 Identities=21% Similarity=0.258 Sum_probs=40.9
Q ss_pred cCcceeeeCCcchhhcccchhhHHHHH--HHhC---------CCccccccceeeccccc
Q psy14198 85 RGVSYLRLRPDRVAMQDATAQMAMLQF--ISSG---------LPRVAVPSTNDSIVPLP 132 (149)
Q Consensus 85 rG~~YI~LrpDRva~QDATAqMAlLQF--ma~G---------l~rVaVPtSVHC~~~~~ 132 (149)
.+.+ |.|+|+||+|||.||+||++|| |..+ +-...||+.+|||-..-
T Consensus 114 ~~~e-i~f~P~RV~~QD~Tgvpa~vdlAamr~a~~~~g~dp~~inp~vPvdlviDHsvq 171 (936)
T PLN00070 114 KQVE-IPFKPARVLLQDFTGVPAVVDLACMRDAMNNLGGDPNKINPLVPVDLVIDHSVQ 171 (936)
T ss_pred CCce-eccCCceEEeecCCCCcceeHHHHHHHHHHHcCCCccccCCCCCcceEecCcee
Confidence 4566 9999999999999999999999 6666 77889999999996543
No 24
>PLN00094 aconitate hydratase 2; Provisional
Probab=97.81 E-value=1.9e-05 Score=76.97 Aligned_cols=54 Identities=22% Similarity=0.164 Sum_probs=46.3
Q ss_pred CCCCchhHHHhhhcCCCCCccccccCcceeeeCCcchhhcccchhhHHHHHHHhCCC
Q psy14198 61 NRPLTLSEKILYSHIDDPEKQDIERGVSYLRLRPDRVAMQDATAQMAMLQFISSGLP 117 (149)
Q Consensus 61 ~rpLTLaEKIL~sHL~~~~~~~~~rG~~YI~LrpDRva~QDATAqMAlLQFma~Gl~ 117 (149)
++++|++||||..|.-.++ .+.+|+. +..++|.|.+||.||.|++-+|+.+|..
T Consensus 441 ~mG~TlaEKIl~~a~G~~~--~V~pGe~-v~~~vD~v~sqD~TGPmt~~efkel~~~ 494 (938)
T PLN00094 441 PKGFTLAQKMVGKACGVDE--GILPGTY-CEPRMTTVGSQDTTGPMTRDELKDLACL 494 (938)
T ss_pred CCchhHHHHHHHHHhCCCC--CCCCCCE-EEEECcEEeeeccccHHHHHHHHHhccc
Confidence 4678999999999974321 2789976 9999999999999999999999998664
No 25
>PRK12881 acnA aconitate hydratase; Provisional
Probab=97.80 E-value=1.1e-05 Score=78.16 Aligned_cols=48 Identities=23% Similarity=0.205 Sum_probs=39.7
Q ss_pred cCcceeeeCCcchhhcccchhhHHHHHHHh-------CCCc----cccccceeecccccc
Q psy14198 85 RGVSYLRLRPDRVAMQDATAQMAMLQFISS-------GLPR----VAVPSTNDSIVPLPC 133 (149)
Q Consensus 85 rG~~YI~LrpDRva~QDATAqMAlLQFma~-------Gl~r----VaVPtSVHC~~~~~~ 133 (149)
.+++ |.|+|||++|||.||+||+++|.+| |.+. ..+|+.++||-..+-
T Consensus 75 ~~~e-i~~~pdRvllqD~Tg~~a~~dlaamr~a~~~~G~d~~~~~p~vpvdlviDHsv~~ 133 (889)
T PRK12881 75 SDDE-IPFVPARVVMQDFTGVPALVDLAAMRDAAAEAGGDPAKINPLVPVDLVVDHSVAV 133 (889)
T ss_pred CCce-eccccceeeeecccCccHHHHHHHHHHHHHHcCCChhhcCCCCCcceEeCCCCcc
Confidence 3455 9999999999999999999999888 8885 466677899975543
No 26
>COG0065 LeuC 3-isopropylmalate dehydratase large subunit [Amino acid transport and metabolism]
Probab=97.13 E-value=0.00051 Score=62.42 Aligned_cols=59 Identities=29% Similarity=0.333 Sum_probs=51.9
Q ss_pred CCchhHHHhhhcCCCCCccccccCcceeeeCCcchhhcccchhhHHHHHHHhCCCcccccccee
Q psy14198 63 PLTLSEKILYSHIDDPEKQDIERGVSYLRLRPDRVAMQDATAQMAMLQFISSGLPRVAVPSTND 126 (149)
Q Consensus 63 pLTLaEKIL~sHL~~~~~~~~~rG~~YI~LrpDRva~QDATAqMAlLQFma~Gl~rVaVPtSVH 126 (149)
++||+|||+..|....+ ..+|+. +.+.+|+.+.||.|+..|+=.|..+|. +|.-|.-+.
T Consensus 2 ~~Tl~eKI~~~h~~~~~---~~~G~~-~~~~iD~~l~HdvTsP~a~~~lr~~g~-kV~~p~k~~ 60 (423)
T COG0065 2 AKTLYEKILDAHVGKEE---VGAGET-VLLYIDLHLVHDVTSPQAFEGLREAGR-KVRDPEKTV 60 (423)
T ss_pred CccHHHHHHHHhccccc---CCCCCc-EEEEeeeeeeeccccHHHHHHHHHhCC-cccCccceE
Confidence 58999999999998876 567877 999999999999999999999999999 887775443
No 27
>cd01584 AcnA_Mitochondrial Aconitase catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Mitochondrial aconitase A catalytic domain. Aconitase (also known as aconitate hydratase and citrate hydro-lyase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Cis-aconitate is formed as an intermediary product during the course of the reaction. In eukaryotes two isozymes of aconitase are known to exist: one found in the mitochondrial matrix and the other found in the cytoplasm. This is the mitochondrial form. The mitochondrial product is coded by a nuclear gene. Most members of this subfamily are mitochondrial but there are some bacterial members.
Probab=96.52 E-value=0.0018 Score=58.30 Aligned_cols=38 Identities=68% Similarity=0.851 Sum_probs=36.2
Q ss_pred chhhcccchhhHHHHHHHhCCCccccccceeecccccc
Q psy14198 96 RVAMQDATAQMAMLQFISSGLPRVAVPSTNDSIVPLPC 133 (149)
Q Consensus 96 Rva~QDATAqMAlLQFma~Gl~rVaVPtSVHC~~~~~~ 133 (149)
|+.+||.||.+|+.+|+++|.++|..|..+.+|-..|+
T Consensus 1 rv~~~D~tg~~a~~~f~~~g~~~v~~p~~~~~DH~~~~ 38 (412)
T cd01584 1 RVAMQDATAQMALLQFMSSGLPKVAVPSTIHCDHLIEA 38 (412)
T ss_pred CeeEEecccHHHHHHHHHhCCCCCCCCCeEEeCCCccc
Confidence 78999999999999999999999999999999988877
No 28
>cd01585 AcnA_Bact Aconitase catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Bacterial Aconitase-like catalytic domain. Aconitase (aconitate hydratase or citrate hydrolyase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Cis-aconitate is formed as an intermediate product during the course of the reaction. This distinct subfamily is found only in bacteria and Archaea. Its exact characteristics are not known.
Probab=95.36 E-value=0.013 Score=52.43 Aligned_cols=40 Identities=33% Similarity=0.248 Sum_probs=35.4
Q ss_pred cchhhcccchhhHHHHHHHhCCCccccccce-eeccccccc
Q psy14198 95 DRVAMQDATAQMAMLQFISSGLPRVAVPSTN-DSIVPLPCR 134 (149)
Q Consensus 95 DRva~QDATAqMAlLQFma~Gl~rVaVPtSV-HC~~~~~~~ 134 (149)
|++.+||.|+.+|+.+|+.+|.++|..|.+| ++|-..|+.
T Consensus 1 D~~~~hD~t~p~a~~~~~~~g~~~v~~~~~~~~~DH~~p~~ 41 (380)
T cd01585 1 DQTLTQDATGTMAYLQFEAMGVDRVRTELSVSYVDHNTLQT 41 (380)
T ss_pred CceEEEeccHHHHHHHHHHcCCCeeCCCCeEEEeCCCCCCC
Confidence 7899999999999999999999999999765 777777764
No 29
>cd01351 Aconitase Aconitase catalytic domain; Aconitase catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Aconitase catalytic domain. Aconitase (aconitate hydratase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Cis-aconitate is formed as an intermediate product during the course of the reaction. In eukaryotes two isozymes of aconitase are known to exist: one found in the mitochondrial matrix and the other found in the cytoplasm. Aconitase, in its active form, contains a 4Fe-4S iron-sulfur cluster; three cysteine residues have been shown to be ligands of the 4Fe-4S cluster. This is the Aconitase core domain, including structural domains 1, 2 and 3, which binds the Fe-S cluster. The aconitase family also contains the following proteins: - Iron-responsive element binding protein (IRE-BP), a cytosolic protein that binds to iron-responsive elements (IREs). IREs are stem-loop structures found in the 5'
Probab=92.36 E-value=0.087 Score=46.92 Aligned_cols=34 Identities=41% Similarity=0.417 Sum_probs=30.9
Q ss_pred chhhcccchhhHHHHHHHhCCC-ccccccceeecc
Q psy14198 96 RVAMQDATAQMAMLQFISSGLP-RVAVPSTNDSIV 129 (149)
Q Consensus 96 Rva~QDATAqMAlLQFma~Gl~-rVaVPtSVHC~~ 129 (149)
|+++||.||.||+.+|+.+|.+ +|.-|..|.+..
T Consensus 1 ~v~~hD~tgp~a~~~~~~~~~~~~v~~p~~v~~~~ 35 (389)
T cd01351 1 RVMLQDATGPMAMKAFEILAALGKVADPSQIACVH 35 (389)
T ss_pred CEEEEecchHHHHHHHHHcCCCCCCCCcccEEEEE
Confidence 6899999999999999999998 999998887764
No 30
>cd01583 IPMI 3-isopropylmalate dehydratase catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate. Aconatase-like catalytic domain of 3-isopropylmalate dehydratase and related uncharacterized proteins. 3-isopropylmalate dehydratase catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate 3-isopropylmalate. IPMI is involved in fungal and bacterial leucine biosynthesis and is also found in eukaryotes.
Probab=84.75 E-value=0.69 Score=41.56 Aligned_cols=38 Identities=18% Similarity=0.097 Sum_probs=31.2
Q ss_pred chhhcccchhhHHHHHHHhCCCcccccccee--ecccccc
Q psy14198 96 RVAMQDATAQMAMLQFISSGLPRVAVPSTND--SIVPLPC 133 (149)
Q Consensus 96 Rva~QDATAqMAlLQFma~Gl~rVaVPtSVH--C~~~~~~ 133 (149)
++++||.|+.+|+.+|+.+|.++|.=|..|. +|-..|.
T Consensus 1 ~~~~hD~t~p~a~~~~~~~g~~~v~dp~k~~~~~DH~vp~ 40 (382)
T cd01583 1 LHLVHDVTSPQAFEGLREAGREKVWDPEKIVAVFDHNVPT 40 (382)
T ss_pred CEEEEeccHHHHHHHHHHhCCcccCCCCceEEEcCCCCCC
Confidence 5789999999999999999999998887776 4444443
No 31
>cd01582 Homoaconitase Homoaconitase and other uncharacterized proteins of the Aconitase family. Homoaconitase catalytic domain. Homoaconitase and other uncharacterized proteins of the Aconitase family. Homoaconitase is part of an unusual lysine biosynthesis pathway found only in filamentous fungi, in which lysine is synthesized via the alpha-aminoadipate pathway. In this pathway, homoaconitase catalyzes the conversion of cis-homoaconitic acid into homoisocitric acid. The reaction mechanism is believed to be similar to that of other aconitases.
Probab=84.53 E-value=0.68 Score=41.49 Aligned_cols=36 Identities=19% Similarity=0.224 Sum_probs=29.7
Q ss_pred hhhcccchhhHHHHHHHhCCCccccccceee--cccccc
Q psy14198 97 VAMQDATAQMAMLQFISSGLPRVAVPSTNDS--IVPLPC 133 (149)
Q Consensus 97 va~QDATAqMAlLQFma~Gl~rVaVPtSVHC--~~~~~~ 133 (149)
+.+||.|+.++ ++|+.+|.++|..|..+++ |-..|-
T Consensus 2 ~~~hd~t~p~~-~~~~~~g~~~v~~p~~~~~~~DH~vp~ 39 (363)
T cd01582 2 CMTHDNSWPVA-LKFMSIGATKIHNPDQIVMTLDHDVQN 39 (363)
T ss_pred eeEEeCcHHHH-HHHHHcCCCccCCCCCEEEEcCCCCCC
Confidence 57899999995 4599999999999999999 444443
No 32
>cd01586 AcnA_IRP Aconitase A catalytic domain. Aconitase A catalytic domain. This is the major form of the TCA cycle enzyme aconitate hydratase, also known as aconitase and citrate hydrolyase. It includes bacterial and archaeal aconitase A, and the eukaryotic cytosolic form of aconitase. This group also includes sequences that have been shown to act as an iron-responsive element (IRE) binding protein in animals and may have the same role in other eukaryotes.
Probab=67.42 E-value=3.3 Score=37.88 Aligned_cols=41 Identities=20% Similarity=0.101 Sum_probs=33.2
Q ss_pred chhhcccchhhHHHHHHHh-------CCCc----cccccceeeccccccccc
Q psy14198 96 RVAMQDATAQMAMLQFISS-------GLPR----VAVPSTNDSIVPLPCRRK 136 (149)
Q Consensus 96 Rva~QDATAqMAlLQFma~-------Gl~r----VaVPtSVHC~~~~~~~~~ 136 (149)
|++|||.||.-++.-|.+| |.|- -.+|+.+|||-.++-...
T Consensus 1 Rv~~~D~tg~p~lvDlaa~R~~~~~~g~d~~~~~p~~p~~l~~DH~v~~~~~ 52 (404)
T cd01586 1 RVILQDFTGVPAVVDLAAMRDAVKRLGGDPEKINPLIPVDLVIDHSVQVDFY 52 (404)
T ss_pred CccceecCCccHHHhHHHHHHHHHHhCCChhhcCCCCCcceEcCCCCCCCCc
Confidence 7999999999999999876 4443 468999999988876543
No 33
>KOG0452|consensus
Probab=50.95 E-value=7.8 Score=38.18 Aligned_cols=28 Identities=32% Similarity=0.506 Sum_probs=25.0
Q ss_pred CcceeeeCCcchhhcccchhhHHHHHHHh
Q psy14198 86 GVSYLRLRPDRVAMQDATAQMAMLQFISS 114 (149)
Q Consensus 86 G~~YI~LrpDRva~QDATAqMAlLQFma~ 114 (149)
..| |-++|-||++||-||--|+..|-+|
T Consensus 76 ~vE-vpFkPARViLQDFTGvPavVD~AaM 103 (892)
T KOG0452|consen 76 QVE-VPFKPARVILQDFTGVPAVVDFAAM 103 (892)
T ss_pred cee-eccccceeeeecccCCchheeHHHH
Confidence 344 8999999999999999999999887
No 34
>COG1049 AcnB Aconitase B [Energy production and conversion]
Probab=45.39 E-value=13 Score=36.69 Aligned_cols=44 Identities=25% Similarity=0.301 Sum_probs=33.3
Q ss_pred CCCCchhHHHhhhcCCCCCccccccCcceeeeCCcchhhcccchhhHH
Q psy14198 61 NRPLTLSEKILYSHIDDPEKQDIERGVSYLRLRPDRVAMQDATAQMAM 108 (149)
Q Consensus 61 ~rpLTLaEKIL~sHL~~~~~~~~~rG~~YI~LrpDRva~QDATAqMAl 108 (149)
+++.||+|||+-. -. |- .-+.+|. |...+.--|-.||.||-|.-
T Consensus 370 gkG~TlaqKmvgr-Ac-Gv-~girpGt-ycepkmttVGSQDTTGpMTr 413 (852)
T COG1049 370 GKGFTLAQKMVGR-AC-GV-PGIRPGT-YCEPKMTTVGSQDTTGPMTR 413 (852)
T ss_pred CCcccHHHHHhhh-cc-CC-ccccCCC-cccceeeeeccccCCCCccH
Confidence 6789999998765 22 21 1367775 59999999999999999863
No 35
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=43.86 E-value=17 Score=32.50 Aligned_cols=28 Identities=7% Similarity=-0.021 Sum_probs=20.0
Q ss_pred hhhHHHHHHH-----hCCCccccccceeecccc
Q psy14198 104 AQMAMLQFIS-----SGLPRVAVPSTNDSIVPL 131 (149)
Q Consensus 104 AqMAlLQFma-----~Gl~rVaVPtSVHC~~~~ 131 (149)
..|.|.+-.- .+.+.-.++.||||||..
T Consensus 25 ~~M~YF~~~l~~~~~~~~~~~~idisVhCDv~i 57 (317)
T PF11822_consen 25 SEMRYFAEYLSRYINDSQRWEEIDISVHCDVHI 57 (317)
T ss_pred HhhHHHHHHHhhcccccCcCCCcceEEecChhH
Confidence 4577655443 566777799999999963
No 36
>PRK10515 hypothetical protein; Provisional
Probab=26.33 E-value=66 Score=24.32 Aligned_cols=22 Identities=41% Similarity=0.448 Sum_probs=18.9
Q ss_pred hHHHHHHHHHHhhCCCCchhHH
Q psy14198 48 KLEKTLQVIRKRLNRPLTLSEK 69 (149)
Q Consensus 48 ~~~~~l~~vr~~l~rpLTLaEK 69 (149)
.+.-.|+.+|+.+||+||=+|-
T Consensus 18 evkt~L~~aR~~~gR~LTNaE~ 39 (90)
T PRK10515 18 ELKTLLDRARIAHGRPLTNSET 39 (90)
T ss_pred HHHHHHHHHHHHcCCccchhhH
Confidence 3677899999999999998874
No 37
>PF11656 DUF3811: YjbD family (DUF3811); InterPro: IPR020317 This entry contains proteins with no known function.
Probab=25.90 E-value=67 Score=24.13 Aligned_cols=22 Identities=36% Similarity=0.487 Sum_probs=18.9
Q ss_pred hHHHHHHHHHHhhCCCCchhHH
Q psy14198 48 KLEKTLQVIRKRLNRPLTLSEK 69 (149)
Q Consensus 48 ~~~~~l~~vr~~l~rpLTLaEK 69 (149)
.+.-.|+.+|+.+||+||=+|-
T Consensus 16 evkt~L~~aRk~~gR~LTNaE~ 37 (87)
T PF11656_consen 16 EVKTLLDQARKNLGRELTNAEQ 37 (87)
T ss_pred HHHHHHHHHHHHcCCccchhhh
Confidence 3677899999999999998874
Done!