Query psy14198
Match_columns 149
No_of_seqs 156 out of 506
Neff 3.1
Searched_HMMs 29240
Date Fri Aug 16 21:56:35 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14198.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14198hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1c96_A Mitochondrial aconitase 99.8 1E-20 3.5E-25 175.7 10.2 104 32-135 2-106 (753)
2 1l5j_A Aconitate hydratase 2; 98.9 1.3E-09 4.3E-14 103.2 5.3 62 61-126 379-440 (865)
3 2b3y_A Iron-responsive element 98.4 2.4E-07 8.3E-12 87.9 4.9 70 61-133 49-129 (888)
4 3f81_A Dual specificity protei 20.3 76 0.0026 22.6 3.0 45 85-129 79-124 (183)
5 2e0t_A Dual specificity phosph 15.7 60 0.0021 22.3 1.4 46 85-130 49-95 (151)
6 2pq5_A Dual specificity protei 14.6 1E+02 0.0034 22.9 2.5 45 86-130 96-141 (205)
7 2y96_A Dual specificity phosph 12.9 1.2E+02 0.0041 23.0 2.6 46 85-130 103-149 (219)
8 3ezz_A Dual specificity protei 11.3 1.6E+02 0.0054 20.0 2.6 47 83-130 44-91 (144)
9 2hcm_A Dual specificity protei 11.2 1.4E+02 0.0049 20.8 2.4 46 84-130 53-99 (164)
10 1kg1_A NIP1, necrosis inducing 10.9 62 0.0021 21.5 0.3 22 124-145 23-44 (60)
No 1
>1c96_A Mitochondrial aconitase; lyase, tricarboxylic acid cycle, iron-sulfur, mitochondrion, transit peptide, 4Fe-4S, 3D-structure; HET: FLC; 1.81A {Bos taurus} SCOP: c.8.2.1 c.83.1.1 PDB: 1c97_A* 1b0k_A* 1b0j_A* 7acn_A* 6acn_A* 5acn_A* 1b0m_A* 1ami_A* 1amj_A 8acn_A* 1fgh_A* 1aco_A* 1nis_A* 1nit_A
Probab=99.83 E-value=1e-20 Score=175.66 Aligned_cols=104 Identities=64% Similarity=0.963 Sum_probs=97.2
Q ss_pred CcccCCCCCCCC-CchhhHHHHHHHHHHhhCCCCchhHHHhhhcCCCCCccccccCcceeeeCCcchhhcccchhhHHHH
Q psy14198 32 YAVPMSKFDKDH-LPYGKLEKTLQVIRKRLNRPLTLSEKILYSHIDDPEKQDIERGVSYLRLRPDRVAMQDATAQMAMLQ 110 (149)
Q Consensus 32 ~~v~~s~~d~~~-~~Y~~~~~~l~~vr~~l~rpLTLaEKIL~sHL~~~~~~~~~rG~~YI~LrpDRva~QDATAqMAlLQ 110 (149)
.+|+|+.||.++ .+|+++.++|+.+|+++++|+||+||||++|+.+++.+...+|.+|+.++|||+++||+|++||++|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Tl~eKIl~~H~~~~~~~~~~~~g~~i~~~~drvl~hD~T~~~a~~~ 81 (753)
T 1c96_A 2 AKVAMSHFEPHEYIRYDLLEKNIDIVRKRLNRPLTLSEKIVYGHLDDPANQEIERGKTYLRLRPDRVAMQDATAQMAMLQ 81 (753)
T ss_dssp CCCBSSTTCTTCBCCHHHHHHHHHHHHHHHCSCCCHHHHHHHTTBSCTTTCCCCTTTCEEEECCSEEEEETTTHHHHHHH
T ss_pred CcccccccCccccccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhCCcccccccCCCCEEEEEccEEEEeccccHHHHHH
Confidence 379999999998 8899999999999999999999999999999998765567788888999999999999999999999
Q ss_pred HHHhCCCccccccceeecccccccc
Q psy14198 111 FISSGLPRVAVPSTNDSIVPLPCRR 135 (149)
Q Consensus 111 Fma~Gl~rVaVPtSVHC~~~~~~~~ 135 (149)
|+++|.++|.+|..++||-..|+..
T Consensus 82 l~~~G~~~v~~P~~~~~DH~v~~~~ 106 (753)
T 1c96_A 82 FISSGLPKVAVPSTIHCDHLIEAQL 106 (753)
T ss_dssp HHHHTCSSCSSCEEEECCSSCCBSS
T ss_pred HHHhCCCCCCCCCceecCCCCCCCC
Confidence 9999999999999999999999873
No 2
>1l5j_A Aconitate hydratase 2; molecular recognition, RNA binding, citric acid cycle, heat- like domain, lyase; HET: TRA; 2.40A {Escherichia coli} SCOP: a.118.15.1 c.8.2.1 c.83.1.1
Probab=98.87 E-value=1.3e-09 Score=103.20 Aligned_cols=62 Identities=18% Similarity=0.184 Sum_probs=51.4
Q ss_pred CCCCchhHHHhhhcCCCCCccccccCcceeeeCCcchhhcccchhhHHHHHHHhCCCcccccccee
Q psy14198 61 NRPLTLSEKILYSHIDDPEKQDIERGVSYLRLRPDRVAMQDATAQMAMLQFISSGLPRVAVPSTND 126 (149)
Q Consensus 61 ~rpLTLaEKIL~sHL~~~~~~~~~rG~~YI~LrpDRva~QDATAqMAlLQFma~Gl~rVaVPtSVH 126 (149)
++|+||+||||+.|...+. +.+| +|+.++||||++||+||+|++.+|+.+|.+.+.++..|-
T Consensus 379 ~mg~TlaEKIl~~~~g~~~---v~~G-~~v~~~~D~v~~qD~Tg~~~~~~~~~lg~~~~~~d~vv~ 440 (865)
T 1l5j_A 379 DRGFSLAQKMVGRACGVKG---IRPG-AYCEPKMTSVGSQDTTGPMTRDELKDLACLGFSADLVMQ 440 (865)
T ss_dssp CSCCCHHHHHHHHTTTSSC---CCTT-CEECCBCSEEEECTTTHHHHHHHHHHTTCCSCCSSCEEE
T ss_pred CCCccHHHHHHHHHhCCCc---cCCC-CEEEEEeeEEEEeccCcHHHHHHHHHcCCCcCCCCeEEE
Confidence 4689999999998875433 4555 569999999999999999999999999988776665554
No 3
>2b3y_A Iron-responsive element binding protein 1; IRP1 IRE-IRP1 aconitase activity, lyase; 1.85A {Homo sapiens} SCOP: c.8.2.1 c.83.1.1 PDB: 2b3x_A 3snp_A 3sn2_A 2ipy_A
Probab=98.37 E-value=2.4e-07 Score=87.94 Aligned_cols=70 Identities=14% Similarity=0.181 Sum_probs=54.9
Q ss_pred CCCCchhHHHhhhcCCCCCccccccCcceeeeCCcchhhcccchhhHHHHHHHh-------CCCcc----ccccceeecc
Q psy14198 61 NRPLTLSEKILYSHIDDPEKQDIERGVSYLRLRPDRVAMQDATAQMAMLQFISS-------GLPRV----AVPSTNDSIV 129 (149)
Q Consensus 61 ~rpLTLaEKIL~sHL~~~~~~~~~rG~~YI~LrpDRva~QDATAqMAlLQFma~-------Gl~rV----aVPtSVHC~~ 129 (149)
..+.+++||++..... +.....+|++ +.++||||+|||+||+||+++|++| |.+.. .+|+.+|||-
T Consensus 49 ~~~~~~~~~~v~~~~~--~~~~~~~~~~-i~~~pdrvl~qD~Tg~~a~~~l~~mr~a~~~~g~d~~ki~p~~pv~lv~DH 125 (888)
T 2b3y_A 49 CDEFLVKKQDIENILH--WNVTQHKNIE-VPFKPARVILQDFTGVPAVVDFAAMRDAVKKLGGDPEKINPVCPADLVIDH 125 (888)
T ss_dssp CCSSSSCHHHHHHHHT--HHHHTTTTCE-EEECCSEEEEEHHHHHHHHHHHHHHHHHHHHTTCCGGGSSCSSCEEEECCS
T ss_pred cCCcchhHHHHHHHhc--ccccCCCCCE-EEEeccEEEEEccccHHHHHHHHHHHHHHHhcCCChhhcCCCCCeeEEeCC
Confidence 5688999999998872 2111356655 9999999999999999999999887 77755 4577889997
Q ss_pred cccc
Q psy14198 130 PLPC 133 (149)
Q Consensus 130 ~~~~ 133 (149)
..|-
T Consensus 126 ~v~~ 129 (888)
T 2b3y_A 126 SIQV 129 (888)
T ss_dssp SCCC
T ss_pred CCCc
Confidence 6554
No 4
>3f81_A Dual specificity protein phosphatase 3; hydrolase, protein dual-specificity phosphatase, inhibitor; HET: STT; 1.90A {Homo sapiens} SCOP: c.45.1.1 PDB: 1vhr_A* 1j4x_A*
Probab=20.31 E-value=76 Score=22.55 Aligned_cols=45 Identities=16% Similarity=0.234 Sum_probs=29.4
Q ss_pred cCcceeeeCCcchhhcccchhh-HHHHHHHhCCCccccccceeecc
Q psy14198 85 RGVSYLRLRPDRVAMQDATAQM-AMLQFISSGLPRVAVPSTNDSIV 129 (149)
Q Consensus 85 rG~~YI~LrpDRva~QDATAqM-AlLQFma~Gl~rVaVPtSVHC~~ 129 (149)
.|-.|+.+..+-.-.+|....+ ..++|+...+..-.-|.-|||..
T Consensus 79 ~gi~~~~ip~~D~~~~~~~~~~~~~~~~i~~~~~~~~~~VlVHC~~ 124 (183)
T 3f81_A 79 SGITYLGIKANDTQEFNLSAYFERAADFIDQALAQKNGRVLVHCRE 124 (183)
T ss_dssp TTCEEEECCCCCSTTSCGGGGHHHHHHHHHHHHHSTTCCEEEECSS
T ss_pred CCCEEEEEEcCCCCcccHHHHHHHHHHHHHHHHHcCCCeEEEECCC
Confidence 5778888887665555654444 46788776544323466899975
No 5
>2e0t_A Dual specificity phosphatase 26; conserved hypothetical protein, structural genomics, NPPSFA, project on protein structural and functional analyses; 1.67A {Homo sapiens}
Probab=15.68 E-value=60 Score=22.29 Aligned_cols=46 Identities=17% Similarity=0.232 Sum_probs=24.9
Q ss_pred cCcceeeeCCcchhhcccchhh-HHHHHHHhCCCccccccceeeccc
Q psy14198 85 RGVSYLRLRPDRVAMQDATAQM-AMLQFISSGLPRVAVPSTNDSIVP 130 (149)
Q Consensus 85 rG~~YI~LrpDRva~QDATAqM-AlLQFma~Gl~rVaVPtSVHC~~~ 130 (149)
.|-.|+.+..+-.-.+|....+ ..++|+...+..-.-|.-|||..-
T Consensus 49 ~~i~~~~ip~~d~~~~~l~~~~~~~~~~i~~~~~~~~~~vlVHC~aG 95 (151)
T 2e0t_A 49 LGIRYLGVEAHDSPAFDMSIHFQTAADFIHRALSQPGGKILVHCAVG 95 (151)
T ss_dssp HTCEEEECCCCSSTTSCTHHHHHHHHHHHHHHHHSTTCCEEEECSSS
T ss_pred CCeEEEEEecccCCCccHHHHHHHHHHHHHHHHhcCCCcEEEECCCC
Confidence 4667777765433333432222 356776654322234679999753
No 6
>2pq5_A Dual specificity protein phosphatase 13; hydrolase, dual specificity phosphatase, DUSP13, testis and skeletal muscle specific DSP; 2.30A {Homo sapiens} PDB: 2gwo_A
Probab=14.58 E-value=1e+02 Score=22.95 Aligned_cols=45 Identities=11% Similarity=0.175 Sum_probs=27.8
Q ss_pred CcceeeeCCcchhhcccchhh-HHHHHHHhCCCccccccceeeccc
Q psy14198 86 GVSYLRLRPDRVAMQDATAQM-AMLQFISSGLPRVAVPSTNDSIVP 130 (149)
Q Consensus 86 G~~YI~LrpDRva~QDATAqM-AlLQFma~Gl~rVaVPtSVHC~~~ 130 (149)
|-+|+.+..+-.-.+|..... ..++|+...+..-.-|.-|||..-
T Consensus 96 ~i~y~~ipi~D~p~~dl~~~f~~~~~fI~~~l~~~~~~VLVHC~aG 141 (205)
T 2pq5_A 96 SLEYYGIEADDNPFFDLSVYFLPVARYIRAALSVPQGRVLVHCAMG 141 (205)
T ss_dssp SCEEEECBCCCCTTSCGGGGHHHHHHHHHHHHTSTTCCEEEECSSS
T ss_pred CceEEeeecCCCCcchHHHHHHHHHHHHHHHHhcCCCeEEEECCCC
Confidence 567888876655556655443 356777654432233668999764
No 7
>2y96_A Dual specificity phosphatase DUPD1; hydrolase; 2.38A {Homo sapiens}
Probab=12.94 E-value=1.2e+02 Score=23.04 Aligned_cols=46 Identities=13% Similarity=0.173 Sum_probs=28.5
Q ss_pred cCcceeeeCCcchhhcccchhh-HHHHHHHhCCCccccccceeeccc
Q psy14198 85 RGVSYLRLRPDRVAMQDATAQM-AMLQFISSGLPRVAVPSTNDSIVP 130 (149)
Q Consensus 85 rG~~YI~LrpDRva~QDATAqM-AlLQFma~Gl~rVaVPtSVHC~~~ 130 (149)
.|-.|+.+.++-.-.+|....+ ..++|+...+..-.-|.-|||..-
T Consensus 103 ~~i~y~~ipi~D~~~~~l~~~~~~~~~fI~~~l~~~~~~VLVHC~aG 149 (219)
T 2y96_A 103 MDIQYHGVEADDLPTFDLSVFFYPAAAFIDRALSDDHSKILVHCVMG 149 (219)
T ss_dssp SCCEEEECCCCSSTTSCGGGGHHHHHHHHHHHHTSTTCCEEEECSSS
T ss_pred cCcEEEEEECCCCCchhHHHHHHHHHHHHHHHHHccCCeEEEECCCC
Confidence 4667888876555555654444 356887765522334669999864
No 8
>3ezz_A Dual specificity protein phosphatase 4; alpha/beta, hydrolase, nucleus; 2.90A {Homo sapiens} SCOP: c.45.1.1 PDB: 1m3g_A
Probab=11.30 E-value=1.6e+02 Score=19.97 Aligned_cols=47 Identities=11% Similarity=0.027 Sum_probs=28.0
Q ss_pred cccCcceeeeCCcchhhcccchhhH-HHHHHHhCCCccccccceeeccc
Q psy14198 83 IERGVSYLRLRPDRVAMQDATAQMA-MLQFISSGLPRVAVPSTNDSIVP 130 (149)
Q Consensus 83 ~~rG~~YI~LrpDRva~QDATAqMA-lLQFma~Gl~rVaVPtSVHC~~~ 130 (149)
...|-+|+.+..+-.-.+|...++- .++|+.....+ .-|.-|||..-
T Consensus 44 ~~~~~~~~~ip~~D~~~~~~~~~~~~~~~~i~~~~~~-~~~VlVHC~~G 91 (144)
T 3ezz_A 44 FEGHYQYKCIPVEDNHKADISSWFMEAIEYIDAVKDC-RGRVLVHSQAG 91 (144)
T ss_dssp TTTTSEEEECCCCSSSSCCTTTTHHHHHHHHHHHHHT-TCCEEEEESSS
T ss_pred CCCCceEEEEEcccCCCCChHHHHHHHHHHHHHHHhc-CCeEEEECCCC
Confidence 3456678888776655555444433 66777643321 23668999753
No 9
>2hcm_A Dual specificity protein phosphatase; structural genomics, PSI, protein structure INI NEW YORK SGX research center for structural genomics; 2.00A {Mus musculus}
Probab=11.20 E-value=1.4e+02 Score=20.81 Aligned_cols=46 Identities=11% Similarity=0.016 Sum_probs=25.9
Q ss_pred ccCcceeeeCCcchhhcccchhh-HHHHHHHhCCCccccccceeeccc
Q psy14198 84 ERGVSYLRLRPDRVAMQDATAQM-AMLQFISSGLPRVAVPSTNDSIVP 130 (149)
Q Consensus 84 ~rG~~YI~LrpDRva~QDATAqM-AlLQFma~Gl~rVaVPtSVHC~~~ 130 (149)
..|-.|+.+..+-.-.+|...++ ..++|+...+.+ .-|.-|||..-
T Consensus 53 ~~~~~~~~ip~~D~~~~~~~~~~~~~~~~i~~~~~~-~~~VlVHC~aG 99 (164)
T 2hcm_A 53 APGVAELRVPVFDDPAEDLLTHLEPTCAAMEAAVRD-GGSCLVYCKNG 99 (164)
T ss_dssp CTTCEEEECCCCSCTTSCCHHHHHHHHHHHHHHHHT-TCEEEEEESSS
T ss_pred CCCCEEEEEeCcCCCCchHHHHHHHHHHHHHHHHHc-CCEEEEECCCC
Confidence 45777888876543334433232 356776543321 24678999764
No 10
>1kg1_A NIP1, necrosis inducing protein 1; antiparalel beta sheets, toxin; NMR {Rhynchosporium secalis} SCOP: g.70.1.1
Probab=10.92 E-value=62 Score=21.55 Aligned_cols=22 Identities=36% Similarity=0.573 Sum_probs=17.7
Q ss_pred ceeecccccccccCCceeEeee
Q psy14198 124 TNDSIVPLPCRRKSSTLTLMTL 145 (149)
Q Consensus 124 SVHC~~~~~~~~~~~~~~~~~~ 145 (149)
|--|.||-.|-|..|.|||-..
T Consensus 23 sesclvpgdccrgksrltlcsy 44 (60)
T 1kg1_A 23 SESCLVPGDCCRGKSRLTLCSY 44 (60)
T ss_dssp TCCCBCCEEEEETTEEEEECCB
T ss_pred cccccccccccCCcceeEEEee
Confidence 3459999999999999998643
Done!