RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy14198
         (149 letters)



>1c96_A Mitochondrial aconitase; lyase, tricarboxylic acid cycle,
           iron-sulfur, mitochondrion, transit peptide, 4Fe-4S,
           3D-structure; HET: FLC; 1.81A {Bos taurus} SCOP: c.8.2.1
           c.83.1.1 PDB: 1c97_A* 1b0k_A* 1b0j_A* 7acn_A* 6acn_A*
           5acn_A* 1b0m_A* 1ami_A* 1amj_A 8acn_A* 1fgh_A* 1aco_A*
           1nis_A* 1nit_A
          Length = 753

 Score =  152 bits (386), Expect = 5e-44
 Identities = 67/92 (72%), Positives = 77/92 (83%), Gaps = 1/92 (1%)

Query: 34  VPMSKFDKDH-LPYGKLEKTLQVIRKRLNRPLTLSEKILYSHIDDPEKQDIERGVSYLRL 92
           V MS F+    + Y  LEK + ++RKRLNRPLTLSEKI+Y H+DDP  Q+IERG +YLRL
Sbjct: 4   VAMSHFEPHEYIRYDLLEKNIDIVRKRLNRPLTLSEKIVYGHLDDPANQEIERGKTYLRL 63

Query: 93  RPDRVAMQDATAQMAMLQFISSGLPRVAVPST 124
           RPDRVAMQDATAQMAMLQFISSGLP+VAVPST
Sbjct: 64  RPDRVAMQDATAQMAMLQFISSGLPKVAVPST 95


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
           photosynthetic reaction center, peripheral antenna; HET:
           CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 33.8 bits (76), Expect = 0.008
 Identities = 9/31 (29%), Positives = 18/31 (58%), Gaps = 5/31 (16%)

Query: 79  EKQDIERGVSYLRL-RPDR---VAMQDATAQ 105
           EKQ +++  + L+L   D    +A++ AT +
Sbjct: 18  EKQALKKLQASLKLYADDSAPALAIK-ATME 47


>3ln6_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamyl
           cysteine ligase domain, ATP-grAsp domain, HYB enzyme;
           2.95A {Streptococcus agalactiae serogroup V}
          Length = 750

 Score = 30.6 bits (69), Expect = 0.16
 Identities = 12/80 (15%), Positives = 27/80 (33%), Gaps = 11/80 (13%)

Query: 25  FHRTPQSYAVP--MSKF-----DKDHLPYGKLEKTLQVIRKRLNRPLTLSEKILYSHI-- 75
             +   +       S           + Y  L+  +  +   +     ++EK  YS +  
Sbjct: 203 LDQKLNNPVRSLRNSHLGYVNHKDIRISYTSLKDYVNDLENAVKSGQLIAEKEFYSPVRL 262

Query: 76  --DDPEKQDIERGVSYLRLR 93
                 +  +E+G++YL  R
Sbjct: 263 RGSKACRNYLEKGITYLEFR 282


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 27.9 bits (61), Expect = 1.5
 Identities = 13/61 (21%), Positives = 21/61 (34%), Gaps = 10/61 (16%)

Query: 1   MLAHLARVRQISWKKLCTAIQPRCF-HRTP---QSYAVPMSKFDKD-HLPYGKLEKTLQV 55
            LA     + ++  KL T I+        P   +     +S F    H+P       L +
Sbjct: 340 GLATWDNWKHVNCDKLTTIIE-SSLNVLEPAEYRKMFDRLSVFPPSAHIP----TILLSL 394

Query: 56  I 56
           I
Sbjct: 395 I 395



 Score = 27.5 bits (60), Expect = 2.2
 Identities = 28/169 (16%), Positives = 53/169 (31%), Gaps = 41/169 (24%)

Query: 12  SWKKLCTAIQPRCFHRTPQ-----SYAVPM----SKFDKDHL----PYGKLEKTLQVIRK 58
            +  L + I+      +            +      F K ++    PY KL + L  +R 
Sbjct: 92  KF--LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRP 149

Query: 59  RLNRPLTL-----SEK-ILYSHI--DDPEKQDIERGVSYLRLRPDRVAMQDATAQMAMLQ 110
             N  + +     S K  +   +      +  ++  + +L L+            + MLQ
Sbjct: 150 AKN--VLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCN----SPETVLEMLQ 203

Query: 111 FISSGL-PRVAVPSTNDSIVPLPC-------RR----KSSTLTLMTLRN 147
            +   + P     S + S + L         RR    K     L+ L N
Sbjct: 204 KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN 252



 Score = 27.5 bits (60), Expect = 2.2
 Identities = 20/101 (19%), Positives = 31/101 (30%), Gaps = 23/101 (22%)

Query: 58  KRLNRPLTLSEKI--LYSHIDDPEKQDIERGVSYLRLRPDRVAMQDATAQMAMLQFISSG 115
           K  N P T+ E +  L   ID       +   +  +LR          A++  L   S  
Sbjct: 190 KNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI-KLRIH-----SIQAELRRL-LKSKP 242

Query: 116 LPR-------VAVPSTNDSIVPLPCRRKSSTLTLMTLRNKT 149
                     V      ++   L C+       L+T R K 
Sbjct: 243 YENCLLVLLNVQNAKAWNA-FNLSCK------ILLTTRFKQ 276


>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics,
           nysgxrc T16, GTPase, PSI, protein structure initiative;
           2.00A {Escherichia coli} SCOP: c.37.1.8
          Length = 210

 Score = 26.8 bits (60), Expect = 2.7
 Identities = 9/43 (20%), Positives = 19/43 (44%), Gaps = 2/43 (4%)

Query: 31  SYAVPMSKFDKDHLPYGKLEKTLQVIRKRLNRPLTLSEKILYS 73
           +  V ++K DK  L  G  +  L ++R+ +       +   +S
Sbjct: 139 AVLVLLTKADK--LASGARKAQLNMVREAVLAFNGDVQVETFS 179


>2jvw_A Uncharacterized protein; solution structure, alpha helical
          protein, structural GE unknown function, PSI-2, protein
          structure initiative; NMR {Vibrio fischeri}
          Length = 88

 Score = 24.7 bits (54), Expect = 6.9
 Identities = 8/29 (27%), Positives = 13/29 (44%), Gaps = 2/29 (6%)

Query: 1  MLAHLARVRQISWKKLCTAIQPRCFHRTP 29
          +L  L  V    W++L   +   CF + P
Sbjct: 20 LLTEL--VEHYGWEELSYMVNINCFKKDP 46


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.322    0.134    0.394 

Gapped
Lambda     K      H
   0.267   0.0601    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,201,273
Number of extensions: 121774
Number of successful extensions: 193
Number of sequences better than 10.0: 1
Number of HSP's gapped: 193
Number of HSP's successfully gapped: 13
Length of query: 149
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 64
Effective length of database: 4,328,508
Effective search space: 277024512
Effective search space used: 277024512
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (24.5 bits)