RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy14198
         (149 letters)



>d1acoa2 c.83.1.1 (A:2-528) Aconitase A, N-terminal domain {Cow (Bos
           taurus) [TaxId: 9913]}
          Length = 527

 Score =  128 bits (323), Expect = 2e-36
 Identities = 68/100 (68%), Positives = 81/100 (81%), Gaps = 3/100 (3%)

Query: 34  VPMSKFDKD-HLPYGKLEKTLQVIRKRLNRPLTLSEKILYSHIDDPEKQDIERGVSYLRL 92
           V MS F+   ++ Y  LEK + ++RKRLNRPLTLSEKI+Y H+DDP  Q+IERG +YLRL
Sbjct: 4   VAMSHFEPHEYIRYDLLEKNIDIVRKRLNRPLTLSEKIVYGHLDDPANQEIERGKTYLRL 63

Query: 93  RPDRVAMQDATAQMAMLQFISSGLPRVAVPST--NDSIVP 130
           RPDRVAMQDATAQMAMLQFISSGLP+VAVPST   D ++ 
Sbjct: 64  RPDRVAMQDATAQMAMLQFISSGLPKVAVPSTIHCDHLIE 103


>d1l5ja3 c.83.1.1 (A:373-862) Aconitase B, C-terminal domain
           {Escherichia coli [TaxId: 562]}
          Length = 490

 Score = 58.2 bits (140), Expect = 2e-11
 Identities = 12/68 (17%), Positives = 22/68 (32%), Gaps = 4/68 (5%)

Query: 61  NRPLTLSEKILYSHIDDPEKQDIERGVSYLRLRPDRVAMQDATAQMAMLQFISSGLPRVA 120
           +R  +L++K++           I  G +Y   +   V  QD T  M   +         +
Sbjct: 7   DRGFSLAQKMVGRACGVKG---IRPG-AYCEPKMTSVGSQDTTGPMTRDELKDLACLGFS 62

Query: 121 VPSTNDSI 128
                 S 
Sbjct: 63  ADLVMQSF 70


>d2b3ya2 c.83.1.1 (A:2-630) Iron-responsive element binding protein
           1, N-terminal domain {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 629

 Score = 52.0 bits (124), Expect = 3e-09
 Identities = 21/97 (21%), Positives = 38/97 (39%), Gaps = 18/97 (18%)

Query: 46  YGKLEKTLQV-----IRKRLNRPLTLSEKILYSHIDDPEKQDIERGVSYLRLRPDRVAMQ 100
           YG+L  +++V     IR      +   +     H +  + ++IE     +  +P RV +Q
Sbjct: 31  YGRLPFSIRVLLEAAIRNCDEFLVKKQDIENILHWNVTQHKNIE-----VPFKPARVILQ 85

Query: 101 DATAQMAMLQFIS--------SGLPRVAVPSTNDSIV 129
           D T   A++ F +         G P    P     +V
Sbjct: 86  DFTGVPAVVDFAAMRDAVKKLGGDPEKINPVCPADLV 122


>d1b74a1 c.78.2.1 (A:1-105) Glutamate racemase {Aquifex pyrophilus
          [TaxId: 2714]}
          Length = 105

 Score = 23.9 bits (52), Expect = 4.9
 Identities = 5/21 (23%), Positives = 9/21 (42%), Gaps = 2/21 (9%)

Query: 39 FDKDHLPYGKLEKTLQVIRKR 59
           D   +PYG   ++   I + 
Sbjct: 32 GDTARVPYG--IRSKDTIIRY 50


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.134    0.394 

Gapped
Lambda     K      H
   0.267   0.0529    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 531,003
Number of extensions: 22906
Number of successful extensions: 47
Number of sequences better than 10.0: 1
Number of HSP's gapped: 46
Number of HSP's successfully gapped: 6
Length of query: 149
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 72
Effective length of database: 1,350,386
Effective search space: 97227792
Effective search space used: 97227792
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 49 (23.1 bits)