BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy14199
         (677 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4I4T|F Chain F, Crystal Structure Of Tubulin-rb3-ttl-zampanolide Complex
 pdb|4I50|F Chain F, Crystal Structure Of Tubulin-stathmin-ttl-epothilone A
           Complex
 pdb|4I55|F Chain F, Crystal Structure Of Tubulin-stathmin-ttl Complex
 pdb|4IIJ|F Chain F, Crystal Structure Of Tubulin-stathmin-ttl-apo Complex
 pdb|4IHJ|F Chain F, Crystal Structure Of Tubulin-stathmin-ttl-adp Complex
          Length = 384

 Score = 33.1 bits (74), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 41/162 (25%), Positives = 62/162 (38%), Gaps = 42/162 (25%)

Query: 379 NQFPFEYILTIKDLLSIV---------CRRNS-KDIEKTT--LQTSPDWLPTTY-----N 421
           N+ PF  +     L+ +V         CR+ S   + KT+  L  S  W P +Y     N
Sbjct: 45  NRLPFGRLGHEPGLVQLVNYYRGADKLCRKASLVKLIKTSPELSESCTWFPESYVIYPTN 104

Query: 422 LKT-------------------ELLKFMSYYQNREKKNLNNLWIIKPFNLARSLDSYITD 462
           LKT                   E   F++ Y  R +    N+WI K    A+     I+ 
Sbjct: 105 LKTPVAPAQNGIRHLINNTRTDEREVFLAAYNRRREGREGNVWIAKSSAGAKGEGILISS 164

Query: 463 NINMVIK--SALTGPKIIQKYIENPILFYRDDLSGKVKFDVR 502
             + ++          +IQKY+E P+L       G  KFD+R
Sbjct: 165 EASELLDFIDEQGQVHVIQKYLEKPLLLE----PGHRKFDIR 202


>pdb|3TIG|A Chain A, Tubulin Tyrosine Ligase
 pdb|3TII|A Chain A, Tubulin Tyrosine Ligase
 pdb|3TII|B Chain B, Tubulin Tyrosine Ligase
 pdb|3TIN|A Chain A, Tubulin Tyrosine Ligase
          Length = 380

 Score = 32.0 bits (71), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 28/104 (26%), Positives = 48/104 (46%), Gaps = 12/104 (11%)

Query: 405 EKTTLQTSPDWLPTTYNLKT--ELLKFMSYYQNREKKNLNNLWIIKPFNLARS----LDS 458
           EKT    + + LP   N     E  +F S +  +++    N+WI K  + A+     + S
Sbjct: 108 EKTPAMRARNGLPDLANAPRTDEREEFRSSFNKKKENEEGNVWIAKSSSGAKGEGILISS 167

Query: 459 YITDNINMVIKSALTGPKIIQKYIENPILFYRDDLSGKVKFDVR 502
             T+ ++ +         +IQKY+E+P+L       G  KFD+R
Sbjct: 168 DATELLDFIDNQGQV--HVIQKYLESPLLLE----PGHRKFDIR 205


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.136    0.410 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,080,092
Number of Sequences: 62578
Number of extensions: 849770
Number of successful extensions: 2348
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 2346
Number of HSP's gapped (non-prelim): 10
length of query: 677
length of database: 14,973,337
effective HSP length: 105
effective length of query: 572
effective length of database: 8,402,647
effective search space: 4806314084
effective search space used: 4806314084
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)