Query psy14199
Match_columns 677
No_of_seqs 241 out of 1131
Neff 5.2
Searched_HMMs 46136
Date Fri Aug 16 21:57:41 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14199.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14199hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2155|consensus 100.0 7E-133 2E-137 1055.4 23.6 542 1-670 1-585 (631)
2 KOG2156|consensus 100.0 9.8E-58 2.1E-62 492.4 13.0 314 289-674 168-495 (662)
3 PF03133 TTL: Tubulin-tyrosine 100.0 2.3E-50 5E-55 420.2 10.0 236 373-674 5-255 (292)
4 KOG2157|consensus 100.0 8.5E-40 1.8E-44 361.4 20.3 289 324-673 73-395 (497)
5 KOG2158|consensus 100.0 1.5E-33 3.2E-38 302.4 7.4 236 375-672 172-419 (565)
6 PF14398 ATPgrasp_YheCD: YheC/ 98.4 6.9E-06 1.5E-10 86.0 15.9 185 386-673 15-227 (262)
7 PF08443 RimK: RimK-like ATP-g 96.2 0.0098 2.1E-07 59.0 6.1 62 416-484 18-86 (190)
8 PF02955 GSH-S_ATP: Prokaryoti 96.0 0.011 2.4E-07 58.8 5.8 64 412-484 8-80 (173)
9 KOG2155|consensus 96.0 0.0025 5.3E-08 70.6 1.2 88 29-120 25-113 (631)
10 TIGR02144 LysX_arch Lysine bio 95.3 0.11 2.4E-06 53.9 10.0 42 443-484 123-173 (280)
11 PF13535 ATP-grasp_4: ATP-gras 95.1 0.062 1.3E-06 51.4 7.2 78 387-484 2-90 (184)
12 PRK12458 glutathione synthetas 95.1 0.093 2E-06 57.2 9.2 63 415-484 140-210 (338)
13 PRK05246 glutathione synthetas 94.6 0.11 2.3E-06 55.9 7.9 61 415-484 134-203 (316)
14 PLN02941 inositol-tetrakisphos 94.6 0.13 2.8E-06 56.1 8.6 100 375-484 93-195 (328)
15 PRK14568 vanB D-alanine--D-lac 94.4 0.46 1E-05 51.6 12.4 42 442-483 165-211 (343)
16 TIGR00768 rimK_fam alpha-L-glu 94.3 0.16 3.4E-06 52.2 8.2 60 416-483 103-172 (277)
17 TIGR01380 glut_syn glutathione 94.0 0.13 2.9E-06 55.2 7.1 62 414-484 132-202 (312)
18 PRK10446 ribosomal protein S6 93.6 0.23 5E-06 52.7 8.1 41 443-483 136-181 (300)
19 smart00317 SET SET (Su(var)3-9 93.5 0.11 2.4E-06 45.7 4.6 45 161-217 72-116 (116)
20 PRK01966 ddl D-alanyl-alanine 93.1 1.1 2.4E-05 48.4 12.5 42 442-483 162-208 (333)
21 PF14403 CP_ATPgrasp_2: Circul 92.9 0.16 3.5E-06 57.5 5.9 66 414-487 308-388 (445)
22 COG0189 RimK Glutathione synth 92.8 0.11 2.4E-06 56.3 4.3 65 415-486 133-206 (318)
23 PF03133 TTL: Tubulin-tyrosine 92.8 0.045 9.7E-07 57.7 1.2 34 498-534 117-150 (292)
24 PF02655 ATP-grasp_3: ATP-gras 90.8 0.071 1.5E-06 51.7 0.1 43 441-484 30-72 (161)
25 PF07478 Dala_Dala_lig_C: D-al 90.5 1.4 3.1E-05 44.6 9.1 43 441-483 32-79 (203)
26 PRK12767 carbamoyl phosphate s 90.3 0.89 1.9E-05 48.3 7.8 92 378-485 100-192 (326)
27 PF14397 ATPgrasp_ST: Sugar-tr 88.1 4.5 9.7E-05 43.3 11.1 95 379-484 16-127 (285)
28 PRK08462 biotin carboxylase; V 87.9 1.4 3.1E-05 49.3 7.6 45 442-486 154-209 (445)
29 PRK08654 pyruvate carboxylase 87.4 1.5 3.2E-05 50.5 7.5 44 442-485 152-206 (499)
30 PRK07206 hypothetical protein; 87.4 1.5 3.2E-05 48.4 7.3 83 386-486 105-202 (416)
31 TIGR00514 accC acetyl-CoA carb 87.2 1.7 3.8E-05 48.8 7.8 44 442-485 152-206 (449)
32 PRK08463 acetyl-CoA carboxylas 86.5 1.9 4.1E-05 49.1 7.6 45 442-486 152-207 (478)
33 PRK14571 D-alanyl-alanine synt 85.0 0.96 2.1E-05 47.9 4.1 44 441-484 124-172 (299)
34 PRK08591 acetyl-CoA carboxylas 84.1 2.5 5.4E-05 47.3 7.1 44 442-485 152-206 (451)
35 PRK06849 hypothetical protein; 83.9 3.1 6.7E-05 45.7 7.6 83 385-486 112-198 (389)
36 PF00856 SET: SET domain; Int 83.9 13 0.00027 33.9 10.5 51 155-217 111-161 (162)
37 PRK12999 pyruvate carboxylase; 83.0 2.5 5.4E-05 53.5 7.1 45 442-486 156-211 (1146)
38 TIGR01205 D_ala_D_alaTIGR D-al 82.8 1.8 3.8E-05 45.8 5.0 43 441-483 145-192 (315)
39 TIGR00877 purD phosphoribosyla 82.6 3.1 6.6E-05 46.2 7.0 41 445-485 143-193 (423)
40 PRK01372 ddl D-alanine--D-alan 82.5 1.5 3.3E-05 46.1 4.3 42 442-483 133-179 (304)
41 KOG2157|consensus 82.1 0.89 1.9E-05 52.3 2.6 53 498-566 259-311 (497)
42 TIGR01161 purK phosphoribosyla 81.7 2.8 6E-05 45.5 6.1 42 442-483 133-178 (352)
43 TIGR03103 trio_acet_GNAT GNAT- 81.4 2.2 4.7E-05 49.7 5.4 39 445-483 334-378 (547)
44 PRK12833 acetyl-CoA carboxylas 81.0 4.6 9.9E-05 45.9 7.7 44 442-485 155-209 (467)
45 PRK02186 argininosuccinate lya 80.9 3.8 8.3E-05 50.3 7.5 63 416-486 122-192 (887)
46 COG0439 AccC Biotin carboxylas 80.6 1.8 3.8E-05 49.4 4.2 44 443-486 153-207 (449)
47 PRK05586 biotin carboxylase; V 80.5 1.7 3.8E-05 48.8 4.2 44 442-485 152-206 (447)
48 PRK00885 phosphoribosylamine-- 80.1 4.8 0.0001 44.8 7.4 44 442-485 137-191 (420)
49 TIGR01235 pyruv_carbox pyruvat 79.6 4.2 9.2E-05 51.4 7.4 44 442-485 152-206 (1143)
50 TIGR01142 purT phosphoribosylg 79.4 2.3 4.9E-05 46.3 4.5 43 442-484 136-187 (380)
51 PRK09288 purT phosphoribosylgl 78.3 2.3 5.1E-05 46.5 4.2 42 442-483 149-199 (395)
52 PRK06111 acetyl-CoA carboxylas 77.8 2.6 5.5E-05 47.1 4.4 44 442-485 152-206 (450)
53 PRK14569 D-alanyl-alanine synt 77.8 2.3 4.9E-05 45.3 3.8 42 442-483 130-175 (296)
54 TIGR01369 CPSaseII_lrg carbamo 77.6 9 0.0002 48.1 9.4 43 442-484 704-753 (1050)
55 PRK13278 purP 5-formaminoimida 76.9 2.4 5.2E-05 47.0 3.8 43 443-485 150-202 (358)
56 TIGR01435 glu_cys_lig_rel glut 76.8 16 0.00035 44.3 10.8 40 444-483 513-560 (737)
57 PRK07178 pyruvate carboxylase 76.4 6.8 0.00015 44.6 7.3 44 442-485 151-205 (472)
58 PRK14016 cyanophycin synthetas 75.8 3.9 8.4E-05 49.3 5.4 42 442-483 249-296 (727)
59 PRK14572 D-alanyl-alanine synt 75.3 3.1 6.8E-05 45.3 4.1 42 442-483 171-217 (347)
60 PF05770 Ins134_P3_kin: Inosit 75.2 18 0.00039 39.4 9.8 69 415-488 114-185 (307)
61 PF02786 CPSase_L_D2: Carbamoy 73.7 3.8 8.3E-05 42.0 4.0 47 442-488 38-95 (211)
62 PRK13277 5-formaminoimidazole- 72.6 4 8.7E-05 45.4 4.1 43 442-484 152-208 (366)
63 TIGR02291 rimK_rel_E_lig alpha 72.4 8.7 0.00019 42.0 6.6 43 416-464 52-97 (317)
64 PRK13790 phosphoribosylamine-- 70.8 4.9 0.00011 44.5 4.3 44 442-485 102-152 (379)
65 PF15632 ATPgrasp_Ter: ATP-gra 70.0 13 0.00029 40.8 7.4 86 385-485 103-209 (329)
66 TIGR02068 cya_phycin_syn cyano 69.3 13 0.00028 45.8 7.8 42 442-483 248-295 (864)
67 PRK02471 bifunctional glutamat 68.5 7.4 0.00016 47.2 5.5 41 443-483 525-573 (752)
68 PRK06019 phosphoribosylaminoim 66.4 12 0.00025 41.3 6.1 42 442-483 135-180 (372)
69 PRK05294 carB carbamoyl phosph 66.0 6.2 0.00013 49.6 4.3 44 442-485 704-754 (1066)
70 PRK12815 carB carbamoyl phosph 63.5 12 0.00025 47.3 6.0 44 442-485 705-753 (1068)
71 PRK06395 phosphoribosylamine-- 62.0 16 0.00035 41.3 6.3 43 443-485 142-193 (435)
72 PRK14570 D-alanyl-alanine synt 61.8 9 0.00019 42.4 4.2 42 442-483 171-217 (364)
73 KOG2156|consensus 58.9 5.8 0.00013 45.8 2.0 27 498-524 352-378 (662)
74 TIGR02712 urea_carbox urea car 54.9 24 0.00051 45.2 6.6 44 442-485 150-204 (1201)
75 PHA02117 glutathionylspermidin 54.5 27 0.00059 39.4 6.4 42 444-485 309-353 (397)
76 PF01071 GARS_A: Phosphoribosy 54.2 38 0.00083 34.6 6.9 60 418-484 21-91 (194)
77 PLN02257 phosphoribosylamine-- 54.1 13 0.00028 42.1 3.9 43 443-485 138-191 (434)
78 PRK13789 phosphoribosylamine-- 54.1 26 0.00056 39.6 6.2 44 442-485 143-197 (426)
79 COG4770 Acetyl/propionyl-CoA c 49.6 12 0.00025 43.9 2.6 69 413-486 128-207 (645)
80 KOG2158|consensus 49.3 7.6 0.00016 44.4 1.0 22 498-519 274-295 (565)
81 COG1821 Predicted ATP-utilizin 49.1 7.8 0.00017 41.3 1.0 37 441-485 137-173 (307)
82 PRK05784 phosphoribosylamine-- 47.1 37 0.00081 39.2 6.2 43 444-486 146-209 (486)
83 KOG1083|consensus 46.2 16 0.00034 45.5 3.0 41 166-218 1254-1294(1306)
84 PRK10507 bifunctional glutathi 44.8 49 0.0011 39.5 6.7 43 443-485 528-574 (619)
85 PRK06524 biotin carboxylase-li 44.5 23 0.00051 41.0 4.0 44 441-484 180-227 (493)
86 KOG0369|consensus 44.2 24 0.00051 42.3 3.9 57 424-488 174-241 (1176)
87 KOG0238|consensus 42.9 15 0.00032 42.7 2.0 45 442-486 148-203 (670)
88 KOG1082|consensus 42.4 19 0.00042 39.8 2.8 52 160-221 270-323 (364)
89 PLN02735 carbamoyl-phosphate s 42.1 26 0.00056 44.5 4.1 44 442-485 737-787 (1102)
90 PRK05294 carB carbamoyl phosph 40.3 29 0.00063 43.8 4.2 43 443-485 164-213 (1066)
91 COG2940 Proteins containing SE 39.6 15 0.00033 42.0 1.6 52 160-223 403-454 (480)
92 PF09241 Herp-Cyclin: Herpesvi 39.0 24 0.00051 31.6 2.3 22 15-36 9-30 (106)
93 PF02222 ATP-grasp: ATP-grasp 37.8 1.9E+02 0.0042 28.8 8.8 42 442-483 28-73 (172)
94 COG0754 Gsp Glutathionylspermi 33.6 19 0.00041 40.1 1.0 79 385-485 261-343 (387)
95 COG1038 PycA Pyruvate carboxyl 33.0 57 0.0012 40.1 4.8 71 413-488 134-215 (1149)
96 PRK12815 carB carbamoyl phosph 31.0 75 0.0016 40.3 5.7 44 442-485 163-213 (1068)
97 TIGR01369 CPSaseII_lrg carbamo 30.2 52 0.0011 41.6 4.1 44 442-485 162-212 (1050)
98 PLN02948 phosphoribosylaminoim 29.8 54 0.0012 38.7 4.0 43 442-484 156-204 (577)
99 PF00919 UPF0004: Uncharacteri 29.8 44 0.00096 30.3 2.6 30 332-361 15-44 (98)
100 PLN02735 carbamoyl-phosphate s 27.7 54 0.0012 41.7 3.7 42 443-484 181-229 (1102)
101 COG3919 Predicted ATP-grasp en 25.3 1.3E+02 0.0027 33.3 5.4 124 333-483 60-200 (415)
102 PRK14573 bifunctional D-alanyl 23.8 82 0.0018 38.5 4.2 42 442-483 610-656 (809)
103 TIGR01795 CM_mono_cladeE monof 22.4 99 0.0021 28.0 3.4 34 10-43 53-93 (94)
104 COG1759 5-formaminoimidazole-4 21.0 1.1E+02 0.0024 33.9 3.9 55 415-484 138-204 (361)
105 COG0151 PurD Phosphoribosylami 20.7 1.9E+02 0.0041 33.2 5.8 45 418-470 122-166 (428)
No 1
>KOG2155|consensus
Probab=100.00 E-value=7.2e-133 Score=1055.35 Aligned_cols=542 Identities=41% Similarity=0.717 Sum_probs=495.8
Q ss_pred CCCCccHHHHHHHhHHHHHhCCCChHHHHHHHHhhhhccccccCceeeeeeecccCcC---------CCCCC-------c
Q psy14199 1 MAGDSSFSEFLDNHKQQLLSHAIPIEFWETLGKKLQNHIFDAGNHFSVLRFEYNDDER---------GETDP-------L 64 (677)
Q Consensus 1 ~~~~~~~~~F~~~H~~qL~~~~vP~~~w~~l~~Kl~~e~fDaG~~F~l~~~~~~~~~~---------~~~~p-------~ 64 (677)
|.+...|.+|+++|++||+|||||++||.+||+||..|+||||++|||++++++|||+ ...++ +
T Consensus 1 ~~~a~~f~~F~~~Hg~~L~ASgvPp~lw~rL~~KL~~~tFDaGd~FqI~~~e~~~dEe~e~arel~~~q~nd~~~~~~l~ 80 (631)
T KOG2155|consen 1 DRSAYPFSTFLDQHGGQLNASGVPPELWHRLYKKLSDQTFDAGDHFQIICEENEDDEETEFARELEDLQNNDEDNIFLLD 80 (631)
T ss_pred CCccccHHHHHHhcccccccCCCCHHHHHHHHHHhhhcccCCcCeeeEEEecccchhHHHHHHHHHhccCCCccceeeee
Confidence 5688999999999999999999999999999999999999999999999998886551 11111 6
Q ss_pred eEEEEEccCCCCCCCCCC--------EEEEeeeeeeccchHHHHhh-----hCcchHHHHHhhhCCCC------------
Q psy14199 65 YKVVVSNEDGIKKSDRSN--------IFLIDHAWTYSITTARSDLY-----SNPNLLERMSNLMGVDV------------ 119 (677)
Q Consensus 65 ~~lvv~~e~~l~~~d~~~--------IfLIDHawTfr~~~ar~~L~-----~~p~L~~Rm~~lm~v~~------------ 119 (677)
+.+.+++|+|.++-.|+. ||+|||+||-+.++++++|+ +.++++.||++|||++.
T Consensus 81 ~~~s~~~ESa~~c~~pn~gl~~~~~~iFgiD~~~t~~vd~t~~~le~~v~~e~~e~l~~~s~l~G~~~~~~~vd~~l~~~ 160 (631)
T KOG2155|consen 81 HFMSFSSESARKCVEPNEGLVERLAGIFGIDTDSTEEVDETVEKLETSVEKEEAEHLKKISSLTGNLPRHESVDARLSSY 160 (631)
T ss_pred eeeeeehhhhhcccCCCccHHHhhccccccCCccceeccHHHHHhhccchhhHHHHHHHHHHhhCCCCcccchhhccCcc
Confidence 899999999999999998 99999999999999999999 99999999999999522
Q ss_pred --CCCchhHHHHHHHHHhhccceeecccCCCCCCcceeEeeecccccccccCCCCCeeeeeeEecCCCcEEEEEeeeeec
Q psy14199 120 --DSDTDDKVEQVFHEMWKYNNTYSVKSTADGDTLLPVWYIMDEFGSAIQHSDEPNMRIVPFIYLNEGIAYSILYPIIIK 197 (677)
Q Consensus 120 --~~~~~~~v~~v~~~mWky~~tY~l~~~~~~~~~~~~WYi~De~Gs~i~hsd~pn~~~~pf~~~~~~~~ys~l~p~~~~ 197 (677)
+.|+.+.+++|+++||||++||+| +.++..++++||||||||||||||||+||||++||+|||++++||||||+++
T Consensus 161 ~~~~P~~elv~~VL~amWky~qtY~l-a~~~~~ek~svWYvMDefGsrvrHsdePnf~~aPf~fmPq~vaYsimwp~k~- 238 (631)
T KOG2155|consen 161 SVDDPKNELVEKVLKAMWKYSQTYSL-AYQGEIEKKSVWYVMDEFGSRVRHSDEPNFRIAPFMFMPQNVAYSIMWPTKP- 238 (631)
T ss_pred cccCcchHHHHHHHHHHHHhhheeec-ccCccccccceeEEHhhhhhhhccCCCCcceeeeheecchhcceeEEeeccC-
Confidence 356778999999999999999999 7778889999999999999999999999999999999999999999999999
Q ss_pred ceeeeeeecccCCeEEEeecccCCCCcccceeeecccCCCCcCccccccCCCcccccccCcccccCCCCCccccccchhh
Q psy14199 198 ILIFVKFCYILGSLILTIDYVESYQDPDIRKVLLHPWFPNSYCEVDFNQIEPGAEYFSSGHIEEHLPSSPTVTNIITDED 277 (677)
Q Consensus 198 ~~~~~~~~~~~g~~~~trd~~~~~~~~~~r~~~l~~w~~~~~~~~~~~~~~~~~~~~~~~~~~e~lp~~~~~~~~~~~~~ 277 (677)
+. .|| ||||||+.|..+|++|+++|+||++++ ++....+ +.+||++..
T Consensus 239 ------~~--tge-E~trDfasg~~~p~~Rk~~l~pWa~td---e~~~~~~-~~e~~qa~~------------------- 286 (631)
T KOG2155|consen 239 ------VN--TGE-EITRDFASGVIHPEWRKYILQPWAATD---ETMIPDA-TLEYFQATE------------------- 286 (631)
T ss_pred ------CC--Cch-HHHHHHhhcCCCHHHHHHHhccccCCC---cccCCch-HHHHHHHHH-------------------
Confidence 88 999 999999999999999999999999976 3333333 566665511
Q ss_pred hHHhhhhccccccccCCCCCccccccCccccCCCCCCCcccccCCCCCeEEEEechHHHHHHHcCCCCEEeCCCCCceEE
Q psy14199 278 KILKVYSEYKYVDFNQIEPGAEYFSSGHIEEHLPSSPTVTDIITDEDKILKVYSEYKYVSENLTHPRFVIVDNEEEADIL 357 (677)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkv~t~~~~V~~~L~~~gf~~~~~~~~adi~ 357 (677)
.+..+|.|.++.++.. ++++||||+..+|.+.|+++.|++++++.+|||+
T Consensus 287 -----------------------------~e~k~s~p~~s~pi~h-g~~~kVYtD~~Qv~e~Lt~p~f~~t~~~kdADil 336 (631)
T KOG2155|consen 287 -----------------------------QETKQSAPFTSLPILH-GRKIKVYTDDTQVTEHLTNPKFEYTDDIKDADIL 336 (631)
T ss_pred -----------------------------HhccccCCcccccccc-CceeEEEcCcHHHHHhccCCceEeccCcccccee
Confidence 1112333444444444 7889999999999999999999999999999999
Q ss_pred EccccccchhhhhhcCCCeEEcccccCcccccchHHHHHHHHhHhhhhccCCCCCCCcccceeecChhHHHHHHHHhhhh
Q psy14199 358 WYTHHFKDFKTLAEETPTKFVNQFPFEYILTIKDLLSIVCRRNSKDIEKTTLQTSPDWLPTTYNLKTELLKFMSYYQNRE 437 (677)
Q Consensus 358 W~~~~~~~~~~l~~~~~~Q~vNhfP~~~~LtrKd~L~~~l~~~~~~~~~~~~~~~~~~~P~Tf~L~~el~~f~~~~~~~~ 437 (677)
|..+|++||+++++.+|.|+|||||++++||.||+|+.++++.. +..+|+|.||||.+++++|+++|++|+
T Consensus 337 w~~~hf~Dykkls~e~p~~~iNQFPfE~cltvKd~LA~~a~r~~---------g~~~Wlq~TyNL~TqLpqFv~~fq~Re 407 (631)
T KOG2155|consen 337 WMIKHFHDYKKLSEENPCGMINQFPFESCLTVKDLLAACAMRDP---------GKNDWLQLTYNLNTQLPQFVARFQNRE 407 (631)
T ss_pred eehhhHHHHHHHhccCCcceeccCchHHHHHHHHHHHHHHhhcC---------CCCcccccccccccchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999888744 356799999999999999999999999
Q ss_pred hcCCCceEEEcCCCCCCCCceEEeCChHHHHHhhccCCceeeeeccCcccccccccCCccccceeEEEEEeeccchhhhh
Q psy14199 438 KKNLNNLWIIKPFNLARSLDSYITDNINMVIKSALTGPKIIQKYIENPILFYRDDLSGKVKFDVRYVVLVKSVKPLKVYL 517 (677)
Q Consensus 438 ~~g~~n~WIlKP~n~aRG~GI~I~~~l~~I~r~~~t~p~VVQkYIenPlLi~r~~~~~~~kfd~r~~vl~~~~~~~~~~~ 517 (677)
..|.+|+||+||||+|||.+++||.++++|+|+.+++|+||||||++|+|+.
T Consensus 408 r~g~~N~WI~KPWNlAR~~Dt~vT~~L~~IIRm~EtgPKiv~kYIe~P~LFr---------------------------- 459 (631)
T KOG2155|consen 408 RNGQHNVWIVKPWNLARGMDTTVTEDLNQIIRMIETGPKIVCKYIERPLLFR---------------------------- 459 (631)
T ss_pred hcCcCceEEechhhhhhcccchhhhhHHHHHHHHhcCchHHHHhcCCcceee----------------------------
Confidence 9999999999999999999999999999999999999999999999999992
Q ss_pred hcccccccCCCCCceeeEEEEEEEeeccCcEEEEEccceeeccccCCCCCCCCCcceeeeecccCCCCCccCcchhhhHH
Q psy14199 518 YKNFFLRDDLSGKVKFDVRYVVLVKSVKPLKVYLYKNFFLRFANKPFELSKFDDYEIHFTVMNYDDKTPLCKMLCSDFKI 597 (677)
Q Consensus 518 ~~~~~~~~~~~~grKFDlR~YVLVtSv~PL~vYly~~glvRfAt~~Y~l~~l~d~~~HLTN~NYs~~~~~~~~~~~dF~~ 597 (677)
+| ||||||.||++|+.||++|+|+.+|+|||+++|+++++++++.|||+|||. +++.+|.|++|+.
T Consensus 460 -----------~g-KFDlRYiVllrsi~Pl~~yvy~~FWiRfsnn~fsL~~f~dyEtHFTVmNY~--~kl~q~~ceeFi~ 525 (631)
T KOG2155|consen 460 -----------NG-KFDLRYIVLLRSIAPLTAYVYNRFWIRFSNNEFSLSNFEDYETHFTVMNYL--EKLLQMKCEEFIG 525 (631)
T ss_pred -----------cC-ccceEEEEEEccccchhhhheeheeeeecCCccchhhhhhhhhhhhhhhHH--HHHhhccHHHHHH
Confidence 44 999999999999999999999999999999999999999999999999998 4789999999999
Q ss_pred HHHhhCCCCCccccccCCCchhhHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCCCceEEEeecEEEeCCCCc
Q psy14199 598 EFEKQNPNENWDHIESKINPSENWDHIESKIVTMFRSVFEAATMKDPPLGLGHNVQSRSLYAADLMLTKQNNS 670 (677)
Q Consensus 598 ~l~~~~~~~~W~~~~~g~~~~~~w~~I~~~I~~~i~~vf~aa~~~~~~~~~~~~~~~FELyG~DfmLD~~~~~ 670 (677)
.+++.||..+|+. +...|..+|+++|++|....++++....++++++||+|+||.+++++
T Consensus 526 ~~ek~yp~~pw~d-------------vq~~i~~aire~~eaaak~~~e~g~a~~p~sramygvDlml~~~~~p 585 (631)
T KOG2155|consen 526 EFEKGYPCFPWED-------------VQCSIVPAIREPFEAAAKLNPECGAALLPNSRAMYGVDLMLAGDLTP 585 (631)
T ss_pred HHhhcCCCCCcch-------------hhhHHHHHHHHHHhhhhccCCcccccCCchhhhhhhheeeeccCCCc
Confidence 9999999999998 89999999999999999999999999999999999999999888876
No 2
>KOG2156|consensus
Probab=100.00 E-value=9.8e-58 Score=492.39 Aligned_cols=314 Identities=24% Similarity=0.379 Sum_probs=265.8
Q ss_pred ccccCCCCCccccccCccccCCCCCCCcccccCCCCCeEEEEec---hHHHHHHHcCCCCEEeCCCCCceEEEccccccc
Q psy14199 289 VDFNQIEPGAEYFSSGHIEEHLPSSPTVTDIITDEDKILKVYSE---YKYVSENLTHPRFVIVDNEEEADILWYTHHFKD 365 (677)
Q Consensus 289 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lkv~t~---~~~V~~~L~~~gf~~~~~~~~adi~W~~~~~~~ 365 (677)
++|++|||++.|.|++..++.+ +++..+.|+|.-. ..+|++.|.++||++++...+|..+|. +|.+.
T Consensus 168 Slfp~VpP~i~f~s~~~k~~k~---------p~~~~~vl~w~~t~~~p~vv~~vl~~sgfkivk~n~dw~g~Wg-~h~ks 237 (662)
T KOG2156|consen 168 SLFPRVPPTILFDSSADKVPKP---------PPPLHAVLKWKPTEVMPKVVRQVLANSGFKIVKVNDDWMGVWG-HHLKS 237 (662)
T ss_pred hhcCCCCCeeeeccccccCCCC---------ChhHHHHhccCCcchhHHHHHHHHHhcccEEecccchHHHHhh-hhcCC
Confidence 5899999999999999877654 3346788999843 689999999999999999999999995 66664
Q ss_pred --hhhhhhcCCCeEEcccccCcccccchHHHHHHHHhHhhhhccCCCCCCCcccceeecChhHHHHHHHHhhhhhcCCCc
Q psy14199 366 --FKTLAEETPTKFVNQFPFEYILTIKDLLSIVCRRNSKDIEKTTLQTSPDWLPTTYNLKTELLKFMSYYQNREKKNLNN 443 (677)
Q Consensus 366 --~~~l~~~~~~Q~vNhfP~~~~LtrKd~L~~~l~~~~~~~~~~~~~~~~~~~P~Tf~L~~el~~f~~~~~~~~~~g~~n 443 (677)
|+.+ +++|+||||||+..|+|||.|++++.+++.++++ ..+.|+|.||+||+|+++|.+++.+.+ ..
T Consensus 238 p~fr~i---r~HQkvNH~PGsF~IGRKD~lW~~~~~~~~rf~~----kef~fmPrtyilP~d~e~lrk~w~~na----sr 306 (662)
T KOG2156|consen 238 PSFRAI---RSHQKVNHFPGSFRIGRKDRLWRNILRNQVRFGK----KEFGFMPRTYILPADREELRKYWEKNA----SR 306 (662)
T ss_pred chhhhh---hhhhhhccCCCccccccchHHHHHHHHHHHHhcc----cccCccceeeeccccHHHHHHHHhhCc----cc
Confidence 7665 7999999999999999999999999999998865 379999999999999999999998643 34
Q ss_pred eEEEcCCCCCCCCceEEeCChHHHHHhhccCCceeeeeccCcccccccccCCccccceeEEEEEeeccchhhhhhccccc
Q psy14199 444 LWIIKPFNLARSLDSYITDNINMVIKSALTGPKIIQKYIENPILFYRDDLSGKVKFDVRYVVLVKSVKPLKVYLYKNFFL 523 (677)
Q Consensus 444 ~WIlKP~n~aRG~GI~I~~~l~~I~r~~~t~p~VVQkYIenPlLi~r~~~~~~~kfd~r~~vl~~~~~~~~~~~~~~~~~ 523 (677)
.||+||.++|||.||+++++++++. .+.|.|||+||++|+||
T Consensus 307 ~wIVkppasaRg~gIrv~~kw~q~p---k~rpLvvQ~yieRP~li----------------------------------- 348 (662)
T KOG2156|consen 307 LWIVKPPASARGIGIRVINKWSQFP---KDRPLVVQKYIERPLLI----------------------------------- 348 (662)
T ss_pred cEEecCcccccCcceEeccchhhCC---CcccHHHHHHhhcceee-----------------------------------
Confidence 5999999999999999999999984 57899999999999999
Q ss_pred ccCCCCCceeeEEEEEEEeeccCcEEEEEccceeeccccCCCCC--CCCCcceeeeecccCCCCCccCcchhhhHHHHHh
Q psy14199 524 RDDLSGKVKFDVRYVVLVKSVKPLKVYLYKNFFLRFANKPFELS--KFDDYEIHFTVMNYDDKTPLCKMLCSDFKIEFEK 601 (677)
Q Consensus 524 ~~~~~~grKFDlR~YVLVtSv~PL~vYly~~glvRfAt~~Y~l~--~l~d~~~HLTN~NYs~~~~~~~~~~~dF~~~l~~ 601 (677)
+|.|||+|+||+|||++||+||+|++||+|||+.+|+.. ++.|.++|+| ||+.++... .+. .++++.
T Consensus 349 -----ng~KFDlrlYv~vts~nPLRIy~y~dgL~RFasvkYsp~~a~~~dKymhlt--nYs~nke~~-ys~---~k~~n~ 417 (662)
T KOG2156|consen 349 -----NGSKFDLRLYVVVTSVNPLRIYIYNDGLVRFASVKYSPFDANNVDKYMHLT--NYSPNKESN-YSL---NKYFNA 417 (662)
T ss_pred -----cCcceeEEEEEEEeecCceEEEEeccceeeeccccCCcccccccceeEEec--cccccccch-hhh---hhHHhh
Confidence 899999999999999999999999999999999999984 6789999999 999876544 222 233433
Q ss_pred hCCCCCcccc-------ccCCCchhhHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCCCceEEEeecEEEeCCCCccccc
Q psy14199 602 QNPNENWDHI-------ESKINPSENWDHIESKIVTMFRSVFEAATMKDPPLGLGHNVQSRSLYAADLMLTKQNNSYHVQ 674 (677)
Q Consensus 602 ~~~~~~W~~~-------~~g~~~~~~w~~I~~~I~~~i~~vf~aa~~~~~~~~~~~~~~~FELyG~DfmLD~~~~~y~~~ 674 (677)
+++++|+.. ++|+|++++|..|+..|.++|++.-....+-. .....+...||||+|||||||+|++++...
T Consensus 418 -~~g~kwtl~~lw~~l~~qGvdt~kIW~qir~iV~kti~s~E~~i~~~l-r~~~~~~~~CfELfgFDiilDedLkpwLlE 495 (662)
T KOG2156|consen 418 -CQGSKWTLKSLWLYLDNQGVDTDKIWEQIRNIVIKTIISGEKGINSML-RNYVENPYSCFELFGFDIILDEDLKPWLLE 495 (662)
T ss_pred -cCCchhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhccChhHHHHH-HHHhcCCchhhhhhcceEEecCccceeeEE
Confidence 567899863 69999999999999999999887521111100 012356778999999999999999998653
No 3
>PF03133 TTL: Tubulin-tyrosine ligase family; InterPro: IPR004344 Tubulins and microtubules are subjected to several post-translational modifications of which the reversible detyrosination/tyrosination of the carboxy-terminal end of most alpha-tubulins has been extensively analysed. This modification cycle involves a specific carboxypeptidase and the activity of the tubulin-tyrosine ligase (TTL) []. Tubulin-tyrosine ligase (TTL) catalyses the ATP-dependent post-translational addition of a tyrosine to the carboxy terminal end of detyrosinated alpha-tubulin. The true physiological function of TTL has so far not been established. In normally cycling cells, the tyrosinated form of tubulin predominates. However, in breast cancer cells, the detyrosinated form frequently predominates, with a correlation to tumour aggressiveness []. 3-nitrotyrosine has been shown to be incorporated, by TTL, into the carboxy terminal end of detyrosinated alpha-tubulin. This reaction is not reversible by the carboxypeptidase enzyme. Cells cultured in 3-nitrotyrosine rich medium showed evidence of altered microtubule structure and function, including altered cell morphology, epithelial barrier dysfunction, and apoptosis [].; GO: 0004835 tubulin-tyrosine ligase activity, 0006464 protein modification process; PDB: 3TII_A 3TIN_A 3TIG_A.
Probab=100.00 E-value=2.3e-50 Score=420.24 Aligned_cols=236 Identities=31% Similarity=0.532 Sum_probs=122.6
Q ss_pred CCCeEEcccccCcccccchHHHHHHHHhHhhhhccCCCCCCCcccceeecChhHHHHHHHHhhhhhcCCCceEEEcCCCC
Q psy14199 373 TPTKFVNQFPFEYILTIKDLLSIVCRRNSKDIEKTTLQTSPDWLPTTYNLKTELLKFMSYYQNREKKNLNNLWIIKPFNL 452 (677)
Q Consensus 373 ~~~Q~vNhfP~~~~LtrKd~L~~~l~~~~~~~~~~~~~~~~~~~P~Tf~L~~el~~f~~~~~~~~~~g~~n~WIlKP~n~ 452 (677)
.++|++|||||++.||+|+.|+++++++.+..+ ...+|+|+||.||.++.+|..++.+ +..+.||+||+++
T Consensus 5 ~~~q~vN~~p~~~~l~~K~~l~~~l~~~~~~~~-----~~~~~~p~t~~l~~~~~~~~~~~~~----~~~~~wI~KP~~~ 75 (292)
T PF03133_consen 5 KPFQKVNHFPGSQELTRKDLLAKNLQRYRKKFP-----KEFDFYPETFILPQDYKEFLKYFEK----NPKNLWIVKPSNG 75 (292)
T ss_dssp CHHTT-TSS--EEEE----------------------------------HHHHHHHHHHHHHT----TS---EEEEES--
T ss_pred CCCeeEccCCCCchhhhhHHHHHHHHHHHhhcC-----CcccCCcceEecHHHHHHHHHHHhc----CCCCEEEEecccc
Confidence 568999999999999999999999999987653 2378999999999999999998774 3448999999999
Q ss_pred CCCCceEEeCChHHHHH--hhccCCceeeeeccCcccccccccCCccccceeEEEEEeeccchhhhhhcccccccCCCCC
Q psy14199 453 ARSLDSYITDNINMVIK--SALTGPKIIQKYIENPILFYRDDLSGKVKFDVRYVVLVKSVKPLKVYLYKNFFLRDDLSGK 530 (677)
Q Consensus 453 aRG~GI~I~~~l~~I~r--~~~t~p~VVQkYIenPlLi~r~~~~~~~kfd~r~~vl~~~~~~~~~~~~~~~~~~~~~~~g 530 (677)
+||+||+|+++++++.+ ...++++||||||+||+|+ +|
T Consensus 76 ~rG~GI~l~~~~~~i~~~~~~~~~~~vvQkYI~~PlLi----------------------------------------~g 115 (292)
T PF03133_consen 76 SRGRGIKLFNNLEQILRFSKNKNQPYVVQKYIENPLLI----------------------------------------DG 115 (292)
T ss_dssp -----EEEES-HHHHHCCHCCTTS-EEEEE--SSB--B----------------------------------------TT
T ss_pred CCCCCceecCCHHHHHHHhhhhhhhhhhhhccCCCeEE----------------------------------------ee
Confidence 99999999999999985 3456889999999999999 89
Q ss_pred ceeeEEEEEEEeeccCcEEEEEccceeeccccCCC--CCCCCCcceeeeecccCCCCC----------ccCcchhhhHHH
Q psy14199 531 VKFDVRYVVLVKSVKPLKVYLYKNFFLRFANKPFE--LSKFDDYEIHFTVMNYDDKTP----------LCKMLCSDFKIE 598 (677)
Q Consensus 531 rKFDlR~YVLVtSv~PL~vYly~~glvRfAt~~Y~--l~~l~d~~~HLTN~NYs~~~~----------~~~~~~~dF~~~ 598 (677)
||||||+||||||++||+||+|++|++|||+++|+ ++++.|.++||||+++++... .+.++...|.++
T Consensus 116 rKFDlR~yvlvts~~pl~vy~y~~g~vR~~~~~Y~~~~~~~~~~~~HlTN~~i~k~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (292)
T PF03133_consen 116 RKFDLRVYVLVTSLNPLRVYLYKEGYVRFASEPYDPDLDDLSDRFAHLTNYSIQKKSESNEEDSNEENGNKWSLDQFEEY 195 (292)
T ss_dssp B-EEEEEEEEE-T--T--EEEES--EEEE-SS------------------------------------EEEHHHHHHHCT
T ss_pred eeEEEEEEEEEeeccceeeeeccCceEEeccceeeccccccccccccccccccccccccccccccccccccchhhhhhhh
Confidence 99999999999999999999999999999999999 678899999999887776411 111112222111
Q ss_pred HHhhCCCCCccccccCCCchhhHHHHHHHHHHHHHHH-HHHHHccCCCCCCCCCCCceEEEeecEEEeCCCCccccc
Q psy14199 599 FEKQNPNENWDHIESKINPSENWDHIESKIVTMFRSV-FEAATMKDPPLGLGHNVQSRSLYAADLMLTKQNNSYHVQ 674 (677)
Q Consensus 599 l~~~~~~~~W~~~~~g~~~~~~w~~I~~~I~~~i~~v-f~aa~~~~~~~~~~~~~~~FELyG~DfmLD~~~~~y~~~ 674 (677)
+ +.|++++.+|++|...|.+++.++ +.++... +..+.+||||||+|||||+++++|.+.
T Consensus 196 l------------~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~-----~~~~~~~Fel~G~DfmlD~~~kpwLLE 255 (292)
T PF03133_consen 196 L------------KEGIDWEKIWEKICDIIIKTILAAEFRSSQPN-----MPPRPNCFELFGFDFMLDEDLKPWLLE 255 (292)
T ss_dssp T------------TSSS-STTTCHHHHHHHHHHHHHH-HHHHH-------TTSSSEE-EEEEEEEEEBTTS-EEEEE
T ss_pred c------------ccCCCcccchhhhhHHHHHHhhhhhhhhcccc-----ccccccccceeeeEEEecCCCeEEEee
Confidence 1 226778889999999999888888 5555433 357789999999999999999999763
No 4
>KOG2157|consensus
Probab=100.00 E-value=8.5e-40 Score=361.41 Aligned_cols=289 Identities=24% Similarity=0.378 Sum_probs=234.3
Q ss_pred CCeEEEEec---hHHHHHHHcCCCCEEeC-CCCCceEEEccccccchhhhhhcCCC-eEEcccccCcccccchHHHHHHH
Q psy14199 324 DKILKVYSE---YKYVSENLTHPRFVIVD-NEEEADILWYTHHFKDFKTLAEETPT-KFVNQFPFEYILTIKDLLSIVCR 398 (677)
Q Consensus 324 ~~~lkv~t~---~~~V~~~L~~~gf~~~~-~~~~adi~W~~~~~~~~~~l~~~~~~-Q~vNhfP~~~~LtrKd~L~~~l~ 398 (677)
+..+++.++ ..+|++.+...||..+. ...+|++.|.+.+..++.. ....|+ |++||||+...|++||.|+.++.
T Consensus 73 k~~i~y~~~~~~~~~i~~~~~~~G~l~~~~~~~~~~f~w~~~~~~~~~~-~~~~p~~~~~~~~p~~~~L~rkd~l~~~i~ 151 (497)
T KOG2157|consen 73 KHKIKYRTQEKEPKLLNNFLNREGWLQFTESAEDWNFYWRGYEGIDFDF-SWLAPYNQVVNHFPRRKELTRKDLLMKLIK 151 (497)
T ss_pred CCceEEEecccchHHHHHHHhhcceeeecccccceEEEEeccccccHHH-hhhcchhhhhhccccHHHhhhhHHhhhhHH
Confidence 345666665 46888888888997665 6789999999988777643 334666 99999999999999999999999
Q ss_pred HhHhhhhccCCC-------CCCCcccceeecChhHHHHHHHHhhhhhcCCCceEEEcCCCCCCCCceEEeCChHHHHHhh
Q psy14199 399 RNSKDIEKTTLQ-------TSPDWLPTTYNLKTELLKFMSYYQNREKKNLNNLWIIKPFNLARSLDSYITDNINMVIKSA 471 (677)
Q Consensus 399 ~~~~~~~~~~~~-------~~~~~~P~Tf~L~~el~~f~~~~~~~~~~g~~n~WIlKP~n~aRG~GI~I~~~l~~I~r~~ 471 (677)
++++..+..+.. ...++.|.||.++.|...|+..|.+ ++.+++||+||++.+||+||.+++.++++....
T Consensus 152 r~~~~~e~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~v~e~~~---~~~~~~wIvKP~~~srg~GI~~~~~l~~l~~~~ 228 (497)
T KOG2157|consen 152 RYLALLERSRLPKAQLEDYILLDYVETTFVLLDEYKKLVEEYEE---DSERSWWIVKPASKSRGRGIFLFNTLSDLQAIV 228 (497)
T ss_pred HHHHhccccccchhhcccceeecccchhhhhhhHHHHHHHHHHh---ccccceEEeccccccccceeEEecchhhhhhhh
Confidence 999998765432 2468999999999999999999875 378999999999999999999999999987764
Q ss_pred c----------cCCceeeeeccCcccccccccCCccccceeEEEEEeeccchhhhhhcccccccCCCCCceeeEEEEEEE
Q psy14199 472 L----------TGPKIIQKYIENPILFYRDDLSGKVKFDVRYVVLVKSVKPLKVYLYKNFFLRDDLSGKVKFDVRYVVLV 541 (677)
Q Consensus 472 ~----------t~p~VVQkYIenPlLi~r~~~~~~~kfd~r~~vl~~~~~~~~~~~~~~~~~~~~~~~grKFDlR~YVLV 541 (677)
. .+.++||+||++|||+ +|+|||||.||||
T Consensus 229 ~~~~~~~s~~~~~~~vv~~yi~~plli----------------------------------------~~~KfDlR~~vlv 268 (497)
T KOG2157|consen 229 DSFDSFISENNDEGYVVSAYIDRPLLI----------------------------------------GGHKFDLRQYVLV 268 (497)
T ss_pred hcccccccccccccceeeeeccCcccc----------------------------------------CCceeeeeEEEEe
Confidence 2 3578999999999999 8999999999999
Q ss_pred eeccCcEEEEEccceeeccccCCC-CCCCCCcceeeeecccCCCC-----------CccCcchhhhHHHHHhhCCCCCcc
Q psy14199 542 KSVKPLKVYLYKNFFLRFANKPFE-LSKFDDYEIHFTVMNYDDKT-----------PLCKMLCSDFKIEFEKQNPNENWD 609 (677)
Q Consensus 542 tSv~PL~vYly~~glvRfAt~~Y~-l~~l~d~~~HLTN~NYs~~~-----------~~~~~~~~dF~~~l~~~~~~~~W~ 609 (677)
|+++||.+|.|++|++|||+++|+ +++++|..+||||..+++.. +.+.+++..|+.++........|.
T Consensus 269 t~~~pl~~y~yreg~lRf~t~~y~~~~nl~n~~~HLtN~siqK~~~~~~~~~s~~~~~~~w~~~~~~~yl~~~~~~~~~~ 348 (497)
T KOG2157|consen 269 THFDPLLLYRYREGFLRFSTEPYGPLVNLQNMSVHLTNVSIQKLYPNYCHLSSLLSESCKWTLNSLLLYLRNIGSPCLEL 348 (497)
T ss_pred ecccchhheeeccceEEEEeccCcchhhhcccchhhhccccccCCCCcccccccccCCCcccHHHHHHHHHhhcCCcccc
Confidence 999999999999999999999999 89999999999976555521 234556778888888744333332
Q ss_pred ccccCCCchhhHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCCCceEEEeecEEEeCCCCcccc
Q psy14199 610 HIESKINPSENWDHIESKIVTMFRSVFEAATMKDPPLGLGHNVQSRSLYAADLMLTKQNNSYHV 673 (677)
Q Consensus 610 ~~~~g~~~~~~w~~I~~~I~~~i~~vf~aa~~~~~~~~~~~~~~~FELyG~DfmLD~~~~~y~~ 673 (677)
. ..|.+.+..++..++.++... ....+|||+||+|||+|+++++|.+
T Consensus 349 ~-----------~~i~~~~~~iv~~v~~s~~~~------~~~~n~FElyG~DfliD~~lkpwLi 395 (497)
T KOG2157|consen 349 K-----------LQIKPIITGIVLSVFASATTV------PSLANCFELYGFDFLIDEALKPWLI 395 (497)
T ss_pred c-----------ccchhhhhhhhhhhhhhcccc------ccccchhhhhCcceeecCCCCeEEE
Confidence 2 125555666666665444332 3578999999999999999999975
No 5
>KOG2158|consensus
Probab=99.98 E-value=1.5e-33 Score=302.39 Aligned_cols=236 Identities=20% Similarity=0.256 Sum_probs=186.4
Q ss_pred CeEEcccccCcccccchHHHHHHHHhHhhhhccCCCCCCCcccceeecChhHHHHHHHHhhhhhcCCCceEEEcCCCCCC
Q psy14199 375 TKFVNQFPFEYILTIKDLLSIVCRRNSKDIEKTTLQTSPDWLPTTYNLKTELLKFMSYYQNREKKNLNNLWIIKPFNLAR 454 (677)
Q Consensus 375 ~Q~vNhfP~~~~LtrKd~L~~~l~~~~~~~~~~~~~~~~~~~P~Tf~L~~el~~f~~~~~~~~~~g~~n~WIlKP~n~aR 454 (677)
.|.+||||||..+. ||.|. +..|++.+. ..+.|+|+||.||.++..|.++++.. ..++|+||..+++
T Consensus 172 fqrvn~fPgm~e~~-kd~Ls--l~~mqkifp-----eey~fyp~sw~lPa~l~df~a~~~~~-----KrtfivkpDsgaq 238 (565)
T KOG2158|consen 172 FQRENNFPGMREKE-KDILD--LLEMQKIFP-----EEYMFYPTSWRLPAPLCDFPASTEIM-----KRTFIVKPDSGAQ 238 (565)
T ss_pred hhhhhcCchHHHHH-HHHHh--HHHHHhcCh-----HHhcCCCccccCchHHHHHHHHHHHh-----cccEEECCCCCCC
Confidence 59999999999999 99999 888887653 46889999999999999999998754 3399999999999
Q ss_pred CCceEEeCChHHHHHhhccCCceeeeeccCcccccccccCCccccceeEEEEEeeccchhhhhhcccccccCCCCCceee
Q psy14199 455 SLDSYITDNINMVIKSALTGPKIIQKYIENPILFYRDDLSGKVKFDVRYVVLVKSVKPLKVYLYKNFFLRDDLSGKVKFD 534 (677)
Q Consensus 455 G~GI~I~~~l~~I~r~~~t~p~VVQkYIenPlLi~r~~~~~~~kfd~r~~vl~~~~~~~~~~~~~~~~~~~~~~~grKFD 534 (677)
|.||.+++++..+-.. ..+++|+||..|||+. ++.|||
T Consensus 239 g~giylisDir~~g~~---Q~~~vQeyV~~pLli~---------------------------------------dkyKfd 276 (565)
T KOG2158|consen 239 GSGIYLISDIREKGEY---QNKKVQEYVTYPLLIS---------------------------------------DKYKFD 276 (565)
T ss_pred CcceeeechhhhhhHH---HHHHHHHHhccccccc---------------------------------------ccceee
Confidence 9999999887665432 2389999999999995 799999
Q ss_pred EEEEEEEeeccCcEEEEEccceeeccccCCCC---CCCCCcceeeeecccCCCCCccC-cchhh-----hHHHHHhhCCC
Q psy14199 535 VRYVVLVKSVKPLKVYLYKNFFLRFANKPFEL---SKFDDYEIHFTVMNYDDKTPLCK-MLCSD-----FKIEFEKQNPN 605 (677)
Q Consensus 535 lR~YVLVtSv~PL~vYly~~glvRfAt~~Y~l---~~l~d~~~HLTN~NYs~~~~~~~-~~~~d-----F~~~l~~~~~~ 605 (677)
+|+|+|++|++||+||++++|++|||+++|-. .|+.+.++||| ||+.|++..+ .+++. =...|...+
T Consensus 277 ~rvy~likSvdPlsIfva~eGlaRFcTeky~ePts~n~~~lymhlT--nYslnk~nsny~hsd~sq~~gSkR~Lsti~-- 352 (565)
T KOG2158|consen 277 QRVYSLIKSVDPLSIFVASEGLARFCTEKYIEPTSANRSHLYMHLT--NYSLNKPNSNYAHSDNSQVSGSKRQLSTIN-- 352 (565)
T ss_pred eeeeeeeeccCcceEEEeccchhhhhhccccCCCcccHHHHHHHHH--HhhhcCCCccccccCcccccchhHHHHHHH--
Confidence 99999999999999999999999999999964 47889999999 8888765432 22220 000111110
Q ss_pred CCccccccCCCchhhHHHHHHHHHHHHHHHHHHHH---ccCCCCCCCCCCCceEEEeecEEEeCCCCccc
Q psy14199 606 ENWDHIESKINPSENWDHIESKIVTMFRSVFEAAT---MKDPPLGLGHNVQSRSLYAADLMLTKQNNSYH 672 (677)
Q Consensus 606 ~~W~~~~~g~~~~~~w~~I~~~I~~~i~~vf~aa~---~~~~~~~~~~~~~~FELyG~DfmLD~~~~~y~ 672 (677)
-|.. ..|+|++.+|.+|...+.+++.+...-.. ..+-|.+ ...+.||++.|||+|.+++..+|.
T Consensus 353 -~ql~-s~gvdtk~vwsDik~v~iktvlA~~peLk~~y~~~fp~h-~tgpacfqi~gfDi~~~~k~~pil 419 (565)
T KOG2158|consen 353 -EQLD-SLGVDTKFVWSDIKIVFIKTVLAESPELKEDYIDNFPYH-KTGPACFQIIGFDIVKQRKVLPIL 419 (565)
T ss_pred -HHHH-hcCchHHHHHhhhhhhhcchhhhcCHHHHHHHHHhCCCC-CcCCceEEEeccchhhccccchHH
Confidence 1211 46899999999999998888777633221 1222222 357899999999999999998775
No 6
>PF14398 ATPgrasp_YheCD: YheC/D like ATP-grasp
Probab=98.41 E-value=6.9e-06 Score=85.96 Aligned_cols=185 Identities=16% Similarity=0.118 Sum_probs=114.6
Q ss_pred ccccchHHHHHHHHhHhhhhccCCCCCCCcccceeecC--hhHHHHHHHHhhhhhcCCCceEEEcCCCCCCCCceEEeC-
Q psy14199 386 ILTIKDLLSIVCRRNSKDIEKTTLQTSPDWLPTTYNLK--TELLKFMSYYQNREKKNLNNLWIIKPFNLARSLDSYITD- 462 (677)
Q Consensus 386 ~LtrKd~L~~~l~~~~~~~~~~~~~~~~~~~P~Tf~L~--~el~~f~~~~~~~~~~g~~n~WIlKP~n~aRG~GI~I~~- 462 (677)
.+..|-.+++.|.+.. ....++|+|..+. .++.+|++.| +.=++||.++++|+||.-+.
T Consensus 15 ~~~~Kw~v~~~L~~~~---------~l~~~LP~T~~~~~~~~l~~~L~~y---------~~vylKP~~Gs~G~gI~ri~~ 76 (262)
T PF14398_consen 15 GFFDKWEVYKALSRDP---------ELRPYLPETELLTSFEDLREMLNKY---------KSVYLKPDNGSKGKGIIRIEK 76 (262)
T ss_pred CCCCHHHHHHHHHcCC---------cchhhCCCceEcCCHHHHHHHHHHC---------CEEEEEeCCCCCCccEEEEEE
Confidence 3467877777776643 2467999998875 5777777765 36789999999999986544
Q ss_pred ---------------------ChHHHHHhh----ccCCceeeeeccCcccccccccCCccccceeEEEEEeeccchhhhh
Q psy14199 463 ---------------------NINMVIKSA----LTGPKIIQKYIENPILFYRDDLSGKVKFDVRYVVLVKSVKPLKVYL 517 (677)
Q Consensus 463 ---------------------~l~~I~r~~----~t~p~VVQkYIenPlLi~r~~~~~~~kfd~r~~vl~~~~~~~~~~~ 517 (677)
+.+++.... ..+++|||++|+ ++-.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~yIiQq~I~--l~~~---------------------------- 126 (262)
T PF14398_consen 77 KGGGYRIQYRNKKKNVRRTFSSLEELEQFLKELLGKRRYIIQQGIP--LATY---------------------------- 126 (262)
T ss_pred eCCEEEEEEccCCceeEEEeCCHHHHHHHHHHhcCCCcEEEeCCcc--cccc----------------------------
Confidence 223322221 235799999995 3321
Q ss_pred hcccccccCCCCCceeeEEEEEEEeeccCcEEEEEccceeeccccCCCCCCCCCcceeeeecccCCCCCccCcchhhhHH
Q psy14199 518 YKNFFLRDDLSGKVKFDVRYVVLVKSVKPLKVYLYKNFFLRFANKPFELSKFDDYEIHFTVMNYDDKTPLCKMLCSDFKI 597 (677)
Q Consensus 518 ~~~~~~~~~~~~grKFDlR~YVLVtSv~PL~vYly~~glvRfAt~~Y~l~~l~d~~~HLTN~NYs~~~~~~~~~~~dF~~ 597 (677)
+|+.||+|+.|-=..-+ -|......+|+|...-= .| |++.+.. -+..+++..
T Consensus 127 -----------~gr~fD~RvlvqK~~~G---~W~vtg~~~Rva~~~~i----------vT--N~~~GG~--~~~~~~~l~ 178 (262)
T PF14398_consen 127 -----------DGRPFDFRVLVQKNGSG---KWQVTGIVARVAKPGSI----------VT--NLSQGGT--ALPFEEVLR 178 (262)
T ss_pred -----------CCCeEEEEEEEEECCCC---CEEEEEEEEEEcCCCCc----------ee--ccCCCce--ecCHHHHHH
Confidence 79999999988755433 35556778898854321 23 5544322 223333332
Q ss_pred HHHhhCCCCCccccccCCCchhhHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCCCceEEEeecEEEeCCCCcccc
Q psy14199 598 EFEKQNPNENWDHIESKINPSENWDHIESKIVTMFRSVFEAATMKDPPLGLGHNVQSRSLYAADLMLTKQNNSYHV 673 (677)
Q Consensus 598 ~l~~~~~~~~W~~~~~g~~~~~~w~~I~~~I~~~i~~vf~aa~~~~~~~~~~~~~~~FELyG~DfmLD~~~~~y~~ 673 (677)
..+ .. ..+...|.++...+-.+.... .+.-+.-+|+||-+|.++++|.+
T Consensus 179 ~~~------~~-------------~~~~~~l~~~a~~ia~~le~~--------~~~~~gElGiDl~iD~~g~iWli 227 (262)
T PF14398_consen 179 QSE------EA-------------EKIREELEDLALEIAQALEKH--------FGGHLGELGIDLGIDKNGKIWLI 227 (262)
T ss_pred hhh------hH-------------HHHHHHHHHHHHHHHHHHHHh--------cCCceeEEEEEEEEcCCCCEEEE
Confidence 221 11 225566666555553333322 11216678999999999998864
No 7
>PF08443 RimK: RimK-like ATP-grasp domain; InterPro: IPR013651 This ATP-grasp domain is found in the ribosomal S6 modification enzyme RimK []. It has an unusual nucleotide-binding fold referred to as palmate, or ATP-grasp fold. This domain is found in a number of enzymes of known structure as well as in urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis.; PDB: 1UC8_B 1UC9_A.
Probab=96.15 E-value=0.0098 Score=59.05 Aligned_cols=62 Identities=16% Similarity=0.249 Sum_probs=32.7
Q ss_pred ccceeecC--hhHHHHHHHHhhhhhcCCCceEEEcCCCCCCCCceEEeCChHHHHHhhc-----cCCceeeeeccC
Q psy14199 416 LPTTYNLK--TELLKFMSYYQNREKKNLNNLWIIKPFNLARSLDSYITDNINMVIKSAL-----TGPKIIQKYIEN 484 (677)
Q Consensus 416 ~P~Tf~L~--~el~~f~~~~~~~~~~g~~n~WIlKP~n~aRG~GI~I~~~l~~I~r~~~-----t~p~VVQkYIen 484 (677)
+|+|+... .+..+|++.+. +..-|+||..+++|.|+.++++.+++....+ ..+.++|+||+.
T Consensus 18 vP~t~~~~~~~~~~~~~~~~~-------~~p~ViKp~~g~~G~gV~~i~~~~~~~~~l~~~~~~~~~~~~Q~fI~~ 86 (190)
T PF08443_consen 18 VPETRVTNSPEEAKEFIEELG-------GFPVVIKPLRGSSGRGVFLINSPDELESLLDAFKRLENPILVQEFIPK 86 (190)
T ss_dssp ---EEEESSHHHHHHHHHHH---------SSEEEE-SB-------EEEESHCHHHHHHH-----TTT-EEEE----
T ss_pred CCCEEEECCHHHHHHHHHHhc-------CCCEEEeeCCCCCCCEEEEecCHHHHHHHHHHHHhccCcceEeccccC
Confidence 58887664 56666666542 3458999999999999999999888766533 368899999974
No 8
>PF02955 GSH-S_ATP: Prokaryotic glutathione synthetase, ATP-grasp domain; InterPro: IPR004218 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This is the ATP-binding domain of the enzyme.; GO: 0004363 glutathione synthase activity, 0005524 ATP binding, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=96.04 E-value=0.011 Score=58.81 Aligned_cols=64 Identities=16% Similarity=0.358 Sum_probs=38.5
Q ss_pred CCCcccceeecC--hhHHHHHHHHhhhhhcCCCceEEEcCCCCCCCCceEEeCC----hHHHHHhhc---cCCceeeeec
Q psy14199 412 SPDWLPTTYNLK--TELLKFMSYYQNREKKNLNNLWIIKPFNLARSLDSYITDN----INMVIKSAL---TGPKIIQKYI 482 (677)
Q Consensus 412 ~~~~~P~Tf~L~--~el~~f~~~~~~~~~~g~~n~WIlKP~n~aRG~GI~I~~~----l~~I~r~~~---t~p~VVQkYI 482 (677)
.++++|+|+.-. .++.+|.+.+ ..||+||..++.|+|+..++. +++++.... ..+.++|+||
T Consensus 8 f~~~~P~T~vs~~~~~i~~f~~~~---------~~~VlKPl~g~gG~gV~~i~~~~~n~~~i~e~~~~~~~~~~mvQ~fl 78 (173)
T PF02955_consen 8 FPELIPPTLVSRDKEEIRAFIEEH---------GDIVLKPLDGMGGRGVFRISRDDPNLNSILETLTKNGERPVMVQPFL 78 (173)
T ss_dssp GCCCS--EEEES-HHHHHHHHHHH---------SSEEEEESS--TTTT-EEE-TT-TTHHHHHHHHTTTTTS-EEEEE--
T ss_pred ccccCcCEEEECCHHHHHHHHHHC---------CCEEEEECCCCCCcCEEEEcCCCCCHHHHHHHHHhcCCccEEEEecc
Confidence 468999999876 3444444432 239999999999999999986 455554432 3579999999
Q ss_pred cC
Q psy14199 483 EN 484 (677)
Q Consensus 483 en 484 (677)
..
T Consensus 79 p~ 80 (173)
T PF02955_consen 79 PE 80 (173)
T ss_dssp GG
T ss_pred cc
Confidence 75
No 9
>KOG2155|consensus
Probab=96.01 E-value=0.0025 Score=70.60 Aligned_cols=88 Identities=24% Similarity=0.406 Sum_probs=62.8
Q ss_pred HHHHHhhhhcc-ccccCceeeeeeecccCcCCCCCCceEEEEEccCCCCCCCCCCEEEEeeeeeeccchHHHHhhhCcch
Q psy14199 29 ETLGKKLQNHI-FDAGNHFSVLRFEYNDDERGETDPLYKVVVSNEDGIKKSDRSNIFLIDHAWTYSITTARSDLYSNPNL 107 (677)
Q Consensus 29 ~~l~~Kl~~e~-fDaG~~F~l~~~~~~~~~~~~~~p~~~lvv~~e~~l~~~d~~~IfLIDHawTfr~~~ar~~L~~~p~L 107 (677)
+.|+..|-..- .|-=+.=...+++-+++++++. ..++..-+.++.+|.++||++||+-.|..++||++..-+.||
T Consensus 25 p~lw~rL~~KL~~~tFDaGd~FqI~~~e~~~dEe----~e~arel~~~q~nd~~~~~~l~~~~s~~~ESa~~c~~pn~gl 100 (631)
T KOG2155|consen 25 PELWHRLYKKLSDQTFDAGDHFQIICEENEDDEE----TEFARELEDLQNNDEDNIFLLDHFMSFSSESARKCVEPNEGL 100 (631)
T ss_pred HHHHHHHHHHhhhcccCCcCeeeEEEecccchhH----HHHHHHHHhccCCCccceeeeeeeeeeehhhhhcccCCCccH
Confidence 44555554432 2222223345666666665543 233444456888999999999999999999999999999999
Q ss_pred HHHHHhhhCCCCC
Q psy14199 108 LERMSNLMGVDVD 120 (677)
Q Consensus 108 ~~Rm~~lm~v~~~ 120 (677)
.+|+|.|+|+|.+
T Consensus 101 ~~~~~~iFgiD~~ 113 (631)
T KOG2155|consen 101 VERLAGIFGIDTD 113 (631)
T ss_pred HHhhccccccCCc
Confidence 9999999999874
No 10
>TIGR02144 LysX_arch Lysine biosynthesis enzyme LysX. The family of proteins found in this equivalog include the characterized LysX from Thermus thermophilus which is part of a well-organized lysine biosynthesis gene cluster. LysX is believed to carry out an ATP-dependent acylation of the amino group of alpha-aminoadipate in the prokaryotic version of the fungal AAA lysine biosynthesis pathway. No species having a sequence in this equivalog contains the elements of the more common diaminopimelate lysine biosythesis pathway, and none has been shown to be a lysine auxotroph. These sequences have mainly recieved the name of the related enzyme, "ribosomal protein S6 modification protein RimK". RimK has been characterized in E. coli, and acts by ATP-dependent condensation of S6 with glutamate residues.
Probab=95.26 E-value=0.11 Score=53.90 Aligned_cols=42 Identities=14% Similarity=0.034 Sum_probs=33.2
Q ss_pred ceEEEcCCCCCCCCceEEeCChHHHHHhh---------ccCCceeeeeccC
Q psy14199 443 NLWIIKPFNLARSLDSYITDNINMVIKSA---------LTGPKIIQKYIEN 484 (677)
Q Consensus 443 n~WIlKP~n~aRG~GI~I~~~l~~I~r~~---------~t~p~VVQkYIen 484 (677)
.-.|+||..++.|+|+.++++.+++.... ...+.++|+||+.
T Consensus 123 ~P~vvKP~~g~~g~gv~~v~~~~~l~~~~~~~~~~~~~~~~~~ivQefI~~ 173 (280)
T TIGR02144 123 YPVVLKPVIGSWGRLVALIRDKDELESLLEHKEVLGGSQHKLFYIQEYINK 173 (280)
T ss_pred CCEEEEECcCCCcCCEEEECCHHHHHHHHHHHHhhcCCcCCeEEEEcccCC
Confidence 35899999999999999999988765422 1246899999963
No 11
>PF13535 ATP-grasp_4: ATP-grasp domain; PDB: 3VMM_A 3LN6_A 3LN7_B 2PN1_A 4DIM_A.
Probab=95.14 E-value=0.062 Score=51.41 Aligned_cols=78 Identities=22% Similarity=0.347 Sum_probs=47.4
Q ss_pred cccchHHHHHHHHhHhhhhccCCCCCCCcccceeecCh--hHHHHHHHHhhhhhcCCCceEEEcCCCCCCCCceEEeCCh
Q psy14199 387 LTIKDLLSIVCRRNSKDIEKTTLQTSPDWLPTTYNLKT--ELLKFMSYYQNREKKNLNNLWIIKPFNLARSLDSYITDNI 464 (677)
Q Consensus 387 LtrKd~L~~~l~~~~~~~~~~~~~~~~~~~P~Tf~L~~--el~~f~~~~~~~~~~g~~n~WIlKP~n~aRG~GI~I~~~l 464 (677)
+..|..+.+.+++.. . + .|+++.+.+ ++..+.... +.-||+||..++.|.|+.++++.
T Consensus 2 ~~dK~~~~~~~~~~g-------v---~--~P~~~~~~~~~~~~~~~~~~--------~~p~vvKp~~g~gs~gv~~~~~~ 61 (184)
T PF13535_consen 2 CNDKYRMRELLKKAG-------V---P--VPKTRIVDSEEELRAFAEDL--------GFPFVVKPVDGSGSRGVFIVHSP 61 (184)
T ss_dssp TCCHHHHHHHHHHHT-------S---------EEEECSHHHHHHHHHHS--------SSSEEEEESS-STTTT-EEESSH
T ss_pred CCCHHHHHHHHHHcC-------c---C--CCCEEEECCHHHHHHHHHHc--------CCCEEEEcCccccCCCEEEeCCH
Confidence 345666666665432 2 2 677776654 344443331 26799999999999999999999
Q ss_pred HHHHHhhc---------cCCceeeeeccC
Q psy14199 465 NMVIKSAL---------TGPKIIQKYIEN 484 (677)
Q Consensus 465 ~~I~r~~~---------t~p~VVQkYIen 484 (677)
+++.+..+ ..++|+|+||+-
T Consensus 62 ~~l~~~~~~~~~~~~~~~~~~ivqe~i~g 90 (184)
T PF13535_consen 62 EELEAALAEIREDSPLGNGPVIVQEYIPG 90 (184)
T ss_dssp HHHHHHHHHHHHHHS-HSSSEEEEE---S
T ss_pred HHHHHHHHHHHHhcccCCccEEEEEeeee
Confidence 99877632 247999999984
No 12
>PRK12458 glutathione synthetase; Provisional
Probab=95.08 E-value=0.093 Score=57.17 Aligned_cols=63 Identities=17% Similarity=0.240 Sum_probs=42.3
Q ss_pred cccceeecC--hhHHHHHHHHhhhhhcCCCceEEEcCCCCCCCCceEEeCChH-----HHHHhh-ccCCceeeeeccC
Q psy14199 415 WLPTTYNLK--TELLKFMSYYQNREKKNLNNLWIIKPFNLARSLDSYITDNIN-----MVIKSA-LTGPKIIQKYIEN 484 (677)
Q Consensus 415 ~~P~Tf~L~--~el~~f~~~~~~~~~~g~~n~WIlKP~n~aRG~GI~I~~~l~-----~I~r~~-~t~p~VVQkYIen 484 (677)
.+|+|+... .++.+|++.+ + ....|+||..++.|+|+..+++.+ .+++.. ..++.++|+||..
T Consensus 140 ~vP~T~v~~~~~~~~~~~~~~------~-~~pvVvKPl~G~gG~gV~~v~~~~~~~~~~ile~~~~~~~~ivQeyI~~ 210 (338)
T PRK12458 140 VRPTTHISRNKEYIREFLEES------P-GDKMILKPLQGSGGQGVFLIEKSAQSNLNQILEFYSGDGYVIAQEYLPG 210 (338)
T ss_pred CCCCEEEeCCHHHHHHHHHHc------C-CCeEEEEECCCCCccCeEEEecCChhhHHHHHHHHhhCCCEEEEEcccC
Confidence 588998664 3444444321 1 123899999999999999987433 444332 2468999999973
No 13
>PRK05246 glutathione synthetase; Provisional
Probab=94.57 E-value=0.11 Score=55.88 Aligned_cols=61 Identities=16% Similarity=0.268 Sum_probs=41.2
Q ss_pred cccceeecCh--hHHHHHHHHhhhhhcCCCceEEEcCCCCCCCCceEEeCCh----HHHHHhh---ccCCceeeeeccC
Q psy14199 415 WLPTTYNLKT--ELLKFMSYYQNREKKNLNNLWIIKPFNLARSLDSYITDNI----NMVIKSA---LTGPKIIQKYIEN 484 (677)
Q Consensus 415 ~~P~Tf~L~~--el~~f~~~~~~~~~~g~~n~WIlKP~n~aRG~GI~I~~~l----~~I~r~~---~t~p~VVQkYIen 484 (677)
.+|+|..... ++.+|++.+ +.-|+||..++.|+||....+. ..+.... ...++++|+||+.
T Consensus 134 ~vP~T~~~~~~~~~~~~~~~~---------~~vVlKP~~G~~G~gV~~i~~~~~~~~~~~~~l~~~~~~~~lvQ~~I~~ 203 (316)
T PRK05246 134 LMPPTLVTRDKAEIRAFRAEH---------GDIILKPLDGMGGAGIFRVKADDPNLGSILETLTEHGREPVMAQRYLPE 203 (316)
T ss_pred cCCCEEEeCCHHHHHHHHHHC---------CCEEEEECCCCCccceEEEeCCCccHHHHHHHHHHccCCeEEEEecccc
Confidence 6899987652 344444322 2589999999999999988532 2233322 2468999999973
No 14
>PLN02941 inositol-tetrakisphosphate 1-kinase
Probab=94.56 E-value=0.13 Score=56.12 Aligned_cols=100 Identities=11% Similarity=0.029 Sum_probs=69.8
Q ss_pred CeEEcccccCcccccchHHHHHHHHhHhhhhccCCCCCCCcccceeecChhHHHHHHHHhhhhhcCCCceEEEcCCCC--
Q psy14199 375 TKFVNQFPFEYILTIKDLLSIVCRRNSKDIEKTTLQTSPDWLPTTYNLKTELLKFMSYYQNREKKNLNNLWIIKPFNL-- 452 (677)
Q Consensus 375 ~Q~vNhfP~~~~LtrKd~L~~~l~~~~~~~~~~~~~~~~~~~P~Tf~L~~el~~f~~~~~~~~~~g~~n~WIlKP~n~-- 452 (677)
--.||-...-..+..|..+...+.+....- . ...--.|+|+.+.+.-.++... . +..+.+---|+||-.+
T Consensus 93 v~vidp~~ai~~~~dR~~~~~~L~~~~~~~----~-~~~i~~P~t~v~~~~~~al~~~-~--~~~~l~~P~V~KPl~g~G 164 (328)
T PLN02941 93 VTVLDPPDAIQRLHNRQSMLQVVADLKLSD----G-YGSVGVPKQLVVYDDESSIPDA-V--ALAGLKFPLVAKPLVADG 164 (328)
T ss_pred cEEECCHHHHHHHHHHHHHHHHHHHcCCcc----c-CCCCCCCCEEEEcCHHHHHHHH-H--HHhcCCCCEEEeecccCC
Confidence 457888888888888888877777654210 0 1112489999887643322211 1 1234555689999999
Q ss_pred -CCCCceEEeCChHHHHHhhccCCceeeeeccC
Q psy14199 453 -ARSLDSYITDNINMVIKSALTGPKIIQKYIEN 484 (677)
Q Consensus 453 -aRG~GI~I~~~l~~I~r~~~t~p~VVQkYIen 484 (677)
+.|+|+.++.+.+.+... ..|+++|+||.+
T Consensus 165 ss~gh~m~lv~~~~~L~~l--~~p~~lQEfVnh 195 (328)
T PLN02941 165 SAKSHKMSLAYDQEGLSKL--EPPLVLQEFVNH 195 (328)
T ss_pred CccccceEEecCHHHHHhc--CCcEEEEEecCC
Confidence 999999999999888753 358999999986
No 15
>PRK14568 vanB D-alanine--D-lactate ligase; Provisional
Probab=94.39 E-value=0.46 Score=51.55 Aligned_cols=42 Identities=10% Similarity=0.060 Sum_probs=34.3
Q ss_pred CceEEEcCCCCCCCCceEEeCChHHHHHhhc-----cCCceeeeecc
Q psy14199 442 NNLWIIKPFNLARSLDSYITDNINMVIKSAL-----TGPKIIQKYIE 483 (677)
Q Consensus 442 ~n~WIlKP~n~aRG~GI~I~~~l~~I~r~~~-----t~p~VVQkYIe 483 (677)
+--||+||.++.-|.|+.++++.+++....+ ....+||+||.
T Consensus 165 ~~P~iVKP~~~gsS~Gv~~v~~~~eL~~a~~~a~~~~~~vlVEe~I~ 211 (343)
T PRK14568 165 TYPVFVKPARSGSSFGVSKVNSADELDYAIESARQYDSKVLIEEAVV 211 (343)
T ss_pred CCCEEEEeCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCcEEEECCcC
Confidence 4579999999999999999999998865432 34678999985
No 16
>TIGR00768 rimK_fam alpha-L-glutamate ligases, RimK family. This family, related to bacterial glutathione synthetases, contains at least two different alpha-L-glutamate ligases. One is RimK, as in E. coli, which adds additional Glu residues to the native Glu-Glu C-terminus of ribosomal protein S6, but not to Lys-Glu mutants. Most species with a member of this subfamily lack an S6 homolog ending in Glu-Glu, however. Members in Methanococcus jannaschii act instead as a tetrahydromethanopterin:alpha-l-glutamate ligase (MJ0620) and a gamma-F420-2:alpha-l-glutamate ligase (MJ1001).
Probab=94.32 E-value=0.16 Score=52.22 Aligned_cols=60 Identities=17% Similarity=0.092 Sum_probs=43.0
Q ss_pred ccceeecCh--hHHHHHHHHhhhhhcCCCceEEEcCCCCCCCCceEEeCChHHHHHhhc--------cCCceeeeecc
Q psy14199 416 LPTTYNLKT--ELLKFMSYYQNREKKNLNNLWIIKPFNLARSLDSYITDNINMVIKSAL--------TGPKIIQKYIE 483 (677)
Q Consensus 416 ~P~Tf~L~~--el~~f~~~~~~~~~~g~~n~WIlKP~n~aRG~GI~I~~~l~~I~r~~~--------t~p~VVQkYIe 483 (677)
.|+|+.+.+ ++.++++. .+-.+|+||..++.|.|+.++++.+++.+... .+++++|+||+
T Consensus 103 ~P~t~~~~~~~~~~~~~~~--------~~~p~vvKP~~g~~g~gv~~i~~~~~l~~~~~~~~~~~~~~~~~lvQe~I~ 172 (277)
T TIGR00768 103 QPRTGLAGSPEEALKLIEE--------IGFPVVLKPVFGSWGRLVSLARDKQAAETLLEHFEQLNGPQNLFYVQEYIK 172 (277)
T ss_pred CCCEEEeCCHHHHHHHHHh--------cCCCEEEEECcCCCCCceEEEcCHHHHHHHHHHHHHhcccCCcEEEEeeec
Confidence 578877653 34444332 13479999999999999999999888754321 13789999997
No 17
>TIGR01380 glut_syn glutathione synthetase, prokaryotic. This model was built using glutathione synthetases found in Gram-negative bacteria. This gene does not appear to be present in genomes of Gram-positive bacteria. Glutathione synthetase has an ATP-binding domain in the COOH terminus and catalyzes the second step in the glutathione biosynthesis pathway: ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione. Glutathione is a tripeptide that functions as a reductant in many cellular reactions.
Probab=93.97 E-value=0.13 Score=55.21 Aligned_cols=62 Identities=18% Similarity=0.329 Sum_probs=41.1
Q ss_pred CcccceeecC--hhHHHHHHHHhhhhhcCCCceEEEcCCCCCCCCceEEeCC----hHHHHHhh---ccCCceeeeeccC
Q psy14199 414 DWLPTTYNLK--TELLKFMSYYQNREKKNLNNLWIIKPFNLARSLDSYITDN----INMVIKSA---LTGPKIIQKYIEN 484 (677)
Q Consensus 414 ~~~P~Tf~L~--~el~~f~~~~~~~~~~g~~n~WIlKP~n~aRG~GI~I~~~----l~~I~r~~---~t~p~VVQkYIen 484 (677)
..+|+|.... .++.+|++.+ + .-|+||..++.|+|+..+++ .+.+.... ...++++|+||..
T Consensus 132 ~~vP~T~v~~~~~~~~~~~~~~------g---~vVvKPl~G~~G~gv~~v~~~~~~~~~~~~~~~~~~~~~~~vQ~yI~~ 202 (312)
T TIGR01380 132 KVIPPTLVTRDKAEIRAFLAEH------G---DIVLKPLDGMGGEGIFRLDPGDPNFNSILETMTQRGREPVMAQRYLPE 202 (312)
T ss_pred CCCCCEEEeCCHHHHHHHHHHc------C---CEEEEECCCCCCceEEEEcCCCccHHHHHHHHHhccCCcEEEEecccc
Confidence 3689998654 2444444321 2 48999999999999997754 22222222 2458999999973
No 18
>PRK10446 ribosomal protein S6 modification protein; Provisional
Probab=93.59 E-value=0.23 Score=52.67 Aligned_cols=41 Identities=10% Similarity=0.166 Sum_probs=33.1
Q ss_pred ceEEEcCCCCCCCCceEEeCChHHHHHhhc-----cCCceeeeecc
Q psy14199 443 NLWIIKPFNLARSLDSYITDNINMVIKSAL-----TGPKIIQKYIE 483 (677)
Q Consensus 443 n~WIlKP~n~aRG~GI~I~~~l~~I~r~~~-----t~p~VVQkYIe 483 (677)
--+|+||..++.|.|+.++++.+++....+ ..+.++|+||.
T Consensus 136 ~P~VvKP~~g~~g~GV~~v~~~~~~~~~~~~~~~~~~~~lvQe~I~ 181 (300)
T PRK10446 136 APLVVKLVEGTQGIGVVLAETRQAAESVIDAFRGLNAHILVQEYIK 181 (300)
T ss_pred CCEEEEECCCCCcccEEEEcCHHHHHHHHHHHHhcCCCEEEEeeec
Confidence 469999999999999999998766544322 35789999996
No 19
>smart00317 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain. Putative methyl transferase, based on outlier plant homologues
Probab=93.50 E-value=0.11 Score=45.73 Aligned_cols=45 Identities=29% Similarity=0.396 Sum_probs=37.8
Q ss_pred ccccccccCCCCCeeeeeeEecCCCcEEEEEeeeeecceeeeeeecccCCeEEEeec
Q psy14199 161 EFGSAIQHSDEPNMRIVPFIYLNEGIAYSILYPIIIKILIFVKFCYILGSLILTIDY 217 (677)
Q Consensus 161 e~Gs~i~hsd~pn~~~~pf~~~~~~~~ys~l~p~~~~~~~~~~~~~~~g~~~~trd~ 217 (677)
.+++-|+||-.||+++..... ++...-.++-+++ |. .|| |||.||
T Consensus 72 ~~~~~iNHsc~pN~~~~~~~~--~~~~~~~~~a~r~-------I~--~Ge-Ei~i~Y 116 (116)
T smart00317 72 NIARFINHSCEPNCELLFVEV--NGDSRIVIFALRD-------IK--PGE-ELTIDY 116 (116)
T ss_pred cHHHeeCCCCCCCEEEEEEEE--CCCcEEEEEECCC-------cC--CCC-EEeecC
Confidence 578999999999999987766 4444667778999 88 999 999997
No 20
>PRK01966 ddl D-alanyl-alanine synthetase A; Reviewed
Probab=93.12 E-value=1.1 Score=48.38 Aligned_cols=42 Identities=17% Similarity=0.125 Sum_probs=35.1
Q ss_pred CceEEEcCCCCCCCCceEEeCChHHHHHhhc-----cCCceeeeecc
Q psy14199 442 NNLWIIKPFNLARSLDSYITDNINMVIKSAL-----TGPKIIQKYIE 483 (677)
Q Consensus 442 ~n~WIlKP~n~aRG~GI~I~~~l~~I~r~~~-----t~p~VVQkYIe 483 (677)
+--||+||.++.-|.|+.++++.+++.+..+ ..+.+||+||+
T Consensus 162 ~~P~vVKP~~~gsS~Gv~~v~~~~el~~a~~~~~~~~~~vlvEefI~ 208 (333)
T PRK01966 162 GLPVFVKPANLGSSVGISKVKNEEELAAALDLAFEYDRKVLVEQGIK 208 (333)
T ss_pred CCCEEEEeCCCCCccCEEEECCHHHHHHHHHHHHhcCCcEEEEcCcC
Confidence 4579999999999999999999998866543 35689999996
No 21
>PF14403 CP_ATPgrasp_2: Circularly permuted ATP-grasp type 2
Probab=92.94 E-value=0.16 Score=57.47 Aligned_cols=66 Identities=23% Similarity=0.321 Sum_probs=50.1
Q ss_pred CcccceeecCh----------hHHHHHHHHhhhhhcCCCceEEEcCCCCCCCCceEEeCC-----hHHHHHhhccCCcee
Q psy14199 414 DWLPTTYNLKT----------ELLKFMSYYQNREKKNLNNLWIIKPFNLARSLDSYITDN-----INMVIKSALTGPKII 478 (677)
Q Consensus 414 ~~~P~Tf~L~~----------el~~f~~~~~~~~~~g~~n~WIlKP~n~aRG~GI~I~~~-----l~~I~r~~~t~p~VV 478 (677)
..+|-|..+.. |+.+|+. ..+..||+||..+.-|+|+.+=.. ++++++....+|+|+
T Consensus 308 ~HvP~T~~l~~~~~~~~g~~~dL~~~~~--------a~r~~lVLKP~D~Ygg~GV~~G~e~~~eeW~~~l~~a~~~~yil 379 (445)
T PF14403_consen 308 RHVPWTRLLTAGRTTYQGEDVDLVEFAI--------ANRDRLVLKPNDEYGGKGVYIGWETSPEEWEAALEEAAREPYIL 379 (445)
T ss_pred HhCCceEEEcCccccccccchhHHHHHH--------hchhcEEeccccccCCCCeEECCcCCHHHHHHHHHHHhcCCcEE
Confidence 57899999987 4444432 235789999999999999999774 456666655679999
Q ss_pred eeeccCccc
Q psy14199 479 QKYIENPIL 487 (677)
Q Consensus 479 QkYIenPlL 487 (677)
|+|+.-|-+
T Consensus 380 Qe~v~~~~~ 388 (445)
T PF14403_consen 380 QEYVRPPRE 388 (445)
T ss_pred EEEecCCcc
Confidence 999985443
No 22
>COG0189 RimK Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) [Coenzyme metabolism / Translation, ribosomal structure and biogenesis]
Probab=92.83 E-value=0.11 Score=56.31 Aligned_cols=65 Identities=18% Similarity=0.287 Sum_probs=49.5
Q ss_pred cccceeecCh--hHHHHHHHHhhhhhcCCCceEEEcCCCCCCCCceEEeCChH-HHHHhhcc------CCceeeeeccCc
Q psy14199 415 WLPTTYNLKT--ELLKFMSYYQNREKKNLNNLWIIKPFNLARSLDSYITDNIN-MVIKSALT------GPKIIQKYIENP 485 (677)
Q Consensus 415 ~~P~Tf~L~~--el~~f~~~~~~~~~~g~~n~WIlKP~n~aRG~GI~I~~~l~-~I~r~~~t------~p~VVQkYIenP 485 (677)
-+|.|..... +...|++. ..+.-=|+||..++.|+|+..+++.+ ++....++ +.++||+||..|
T Consensus 133 pvP~T~i~~~~~~~~~~~~~-------~~g~pvVlKp~~Gs~G~gV~~v~~~d~~l~~~~e~~~~~~~~~~ivQeyi~~~ 205 (318)
T COG0189 133 PVPPTLITRDPDEAAEFVAE-------HLGFPVVLKPLDGSGGRGVFLVEDADPELLSLLETLTQEGRKLIIVQEYIPKA 205 (318)
T ss_pred CCCCEEEEcCHHHHHHHHHH-------hcCCCEEEeeCCCCCccceEEecCCChhHHHHHHHHhccccceEehhhhcCcc
Confidence 5788988865 55555554 23467799999999999999999988 66655432 358999999876
Q ss_pred c
Q psy14199 486 I 486 (677)
Q Consensus 486 l 486 (677)
-
T Consensus 206 ~ 206 (318)
T COG0189 206 K 206 (318)
T ss_pred c
Confidence 5
No 23
>PF03133 TTL: Tubulin-tyrosine ligase family; InterPro: IPR004344 Tubulins and microtubules are subjected to several post-translational modifications of which the reversible detyrosination/tyrosination of the carboxy-terminal end of most alpha-tubulins has been extensively analysed. This modification cycle involves a specific carboxypeptidase and the activity of the tubulin-tyrosine ligase (TTL) []. Tubulin-tyrosine ligase (TTL) catalyses the ATP-dependent post-translational addition of a tyrosine to the carboxy terminal end of detyrosinated alpha-tubulin. The true physiological function of TTL has so far not been established. In normally cycling cells, the tyrosinated form of tubulin predominates. However, in breast cancer cells, the detyrosinated form frequently predominates, with a correlation to tumour aggressiveness []. 3-nitrotyrosine has been shown to be incorporated, by TTL, into the carboxy terminal end of detyrosinated alpha-tubulin. This reaction is not reversible by the carboxypeptidase enzyme. Cells cultured in 3-nitrotyrosine rich medium showed evidence of altered microtubule structure and function, including altered cell morphology, epithelial barrier dysfunction, and apoptosis [].; GO: 0004835 tubulin-tyrosine ligase activity, 0006464 protein modification process; PDB: 3TII_A 3TIN_A 3TIG_A.
Probab=92.79 E-value=0.045 Score=57.71 Aligned_cols=34 Identities=50% Similarity=0.814 Sum_probs=19.8
Q ss_pred ccceeEEEEEeeccchhhhhhcccccccCCCCCceee
Q psy14199 498 KFDVRYVVLVKSVKPLKVYLYKNFFLRDDLSGKVKFD 534 (677)
Q Consensus 498 kfd~r~~vl~~~~~~~~~~~~~~~~~~~~~~~grKFD 534 (677)
|||+|+|||++++.|+++|+|+..++|-+- .+|+
T Consensus 117 KFDlR~yvlvts~~pl~vy~y~~g~vR~~~---~~Y~ 150 (292)
T PF03133_consen 117 KFDLRVYVLVTSLNPLRVYLYKEGYVRFAS---EPYD 150 (292)
T ss_dssp -EEEEEEEEE-T--T--EEEES--EEEE-S---S---
T ss_pred eEEEEEEEEEeeccceeeeeccCceEEecc---ceee
Confidence 999999999999999999999998877763 4555
No 24
>PF02655 ATP-grasp_3: ATP-grasp domain; InterPro: IPR003806 The ATP-grasp fold is one of several distinct ATP-binding folds, and is found in enzymes that catalyze the formation of amide bonds, catalyzing the ATP-dependent ligation of a carboxylate-containing molecule to an amino or thiol group-containing molecule []. This fold is found in many different enzyme families, including various peptide synthetases, biotin carboxylase, synapsin, succinyl-CoA synthetase, pyruvate phosphate dikinase, and glutathione synthetase, amongst others []. These enzymes contribute predominantly to macromolecular synthesis, using ATP-hydrolysis to activate their substrates. The ATP-grasp fold shares functional and structural similarities with the PIPK (phosphatidylinositol phosphate kinase) and protein kinase superfamilies. The ATP-grasp domain consists of two subdomains with different alpha+beta folds, which grasp the ATP molecule between them. Each subdomain provides a variable loop that forms part of the active site, with regions from other domains also contributing to the active site, even though these other domains are not conserved between the various ATP-grasp enzymes []. This entry describes a type of ATP-grasp fold that is found in a set of proteins of unknown function.; GO: 0005524 ATP binding, 0046872 metal ion binding; PDB: 3DF7_A.
Probab=90.84 E-value=0.071 Score=51.70 Aligned_cols=43 Identities=26% Similarity=0.382 Sum_probs=18.2
Q ss_pred CCceEEEcCCCCCCCCceEEeCChHHHHHhhccCCceeeeeccC
Q psy14199 441 LNNLWIIKPFNLARSLDSYITDNINMVIKSALTGPKIIQKYIEN 484 (677)
Q Consensus 441 ~~n~WIlKP~n~aRG~GI~I~~~l~~I~r~~~t~p~VVQkYIen 484 (677)
....||+||..++-|.||+++++.+++..... ...++|+||+-
T Consensus 30 ~~~~~viKp~~G~Gg~~i~~~~~~~~~~~~~~-~~~i~Qe~i~G 72 (161)
T PF02655_consen 30 IDGPWVIKPRDGAGGEGIRIVDSEDELEEFLN-KLRIVQEFIEG 72 (161)
T ss_dssp -SSSEEEEESS-------B--SS--TTE--------EEEE---S
T ss_pred cCCcEEEEeCCCCCCCCeEEECCchhhccccc-cceEEeeeeCC
Confidence 46799999999999999999999876543222 12399999973
No 25
>PF07478 Dala_Dala_lig_C: D-ala D-ala ligase C-terminus; InterPro: IPR011095 This entry represents the C-terminal, catalytic domain of the D-alanine--D-alanine ligase enzyme 6.3.2.4 from EC. D-Alanine is one of the central molecules of the cross-linking step of peptidoglycan assembly. There are three enzymes involved in the D-alanine branch of peptidoglycan biosynthesis: the pyridoxal phosphate-dependent D-alanine racemase (Alr), the ATP-dependent D-alanine: D-alanine ligase (Ddl), and the ATP-dependent D-alanine:D-alanine-adding enzyme (MurF) [].; GO: 0008716 D-alanine-D-alanine ligase activity; PDB: 3Q1K_D 3I12_C 1IOV_A 1IOW_A 2DLN_A 4EG0_B 3LWB_A 1EHI_B 2FB9_A 3V4Z_A ....
Probab=90.53 E-value=1.4 Score=44.62 Aligned_cols=43 Identities=14% Similarity=0.177 Sum_probs=33.3
Q ss_pred CCceEEEcCCCCCCCCceEEeCChHHHHHhhc-----cCCceeeeecc
Q psy14199 441 LNNLWIIKPFNLARSLDSYITDNINMVIKSAL-----TGPKIIQKYIE 483 (677)
Q Consensus 441 ~~n~WIlKP~n~aRG~GI~I~~~l~~I~r~~~-----t~p~VVQkYIe 483 (677)
.+--+|+||....-+.||.++++.+++....+ ..+.+|++||.
T Consensus 32 l~~P~~VKP~~~GsS~Gi~~v~~~~el~~ai~~~~~~~~~vlVEefI~ 79 (203)
T PF07478_consen 32 LGFPLFVKPASEGSSIGISKVHNEEELEEAIEKAFKYDDDVLVEEFIS 79 (203)
T ss_dssp HSSSEEEEESSTSTTTTEEEESSHHHHHHHHHHHTTTHSEEEEEE--S
T ss_pred cCCCEEEEECCCCccEEEEEcCCHHHHHHHHHHHhhhcceEEEEeeec
Confidence 35679999999999999999999999876543 24678888884
No 26
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional
Probab=90.28 E-value=0.89 Score=48.25 Aligned_cols=92 Identities=21% Similarity=0.176 Sum_probs=59.1
Q ss_pred EcccccCcccccchHHHHHHHHhHhhhhccCCCCCCCcccceeecChhHHHHHHHHhhhhhcCCCceEEEcCCCCCCCCc
Q psy14199 378 VNQFPFEYILTIKDLLSIVCRRNSKDIEKTTLQTSPDWLPTTYNLKTELLKFMSYYQNREKKNLNNLWIIKPFNLARSLD 457 (677)
Q Consensus 378 vNhfP~~~~LtrKd~L~~~l~~~~~~~~~~~~~~~~~~~P~Tf~L~~el~~f~~~~~~~~~~g~~n~WIlKP~n~aRG~G 457 (677)
.|..........|..+.+.+.++. .+ .|+|+.+.+ ..++.+.+. ....+--+|+||..++.|.|
T Consensus 100 ~~~~~~~~~~~dK~~~~~~l~~~g-------ip-----~p~~~~~~~-~~~~~~~~~---~~~~~~P~viKP~~g~~s~g 163 (326)
T PRK12767 100 VSSKEVIEICNDKWLTYEFLKENG-------IP-----TPKSYLPES-LEDFKAALA---KGELQFPLFVKPRDGSASIG 163 (326)
T ss_pred eCCHHHHHHHhcHHHHHHHHHHcC-------CC-----CCCEEcccC-HHHHHhhhh---cccCCCCEEEEeCCCCCccC
Confidence 344444456677777777666542 21 467776542 222222110 12235579999999999999
Q ss_pred eEEeCChHHHHHhhc-cCCceeeeeccCc
Q psy14199 458 SYITDNINMVIKSAL-TGPKIIQKYIENP 485 (677)
Q Consensus 458 I~I~~~l~~I~r~~~-t~p~VVQkYIenP 485 (677)
+.++++.+++..... ..++++|+||.-+
T Consensus 164 v~~v~~~~el~~~~~~~~~~lvqeyi~G~ 192 (326)
T PRK12767 164 VFKVNDKEELEFLLEYVPNLIIQEFIEGQ 192 (326)
T ss_pred eEEeCCHHHHHHHHHhCCCeEEEeccCCc
Confidence 999999999876543 3589999999653
No 27
>PF14397 ATPgrasp_ST: Sugar-transfer associated ATP-grasp
Probab=88.13 E-value=4.5 Score=43.27 Aligned_cols=95 Identities=18% Similarity=0.233 Sum_probs=53.5
Q ss_pred cccccCcccccchHHHHHHHHhHhhhhccCCCCCCC--cccceee-cC--hhHHHHHHHHhhhhhcCCCceEEEcCCCCC
Q psy14199 379 NQFPFEYILTIKDLLSIVCRRNSKDIEKTTLQTSPD--WLPTTYN-LK--TELLKFMSYYQNREKKNLNNLWIIKPFNLA 453 (677)
Q Consensus 379 NhfP~~~~LtrKd~L~~~l~~~~~~~~~~~~~~~~~--~~P~Tf~-L~--~el~~f~~~~~~~~~~g~~n~WIlKP~n~a 453 (677)
|.--....+..|-.+.+.+..+. ++.... -.+..|. +. .+.+.|.+.... ......++||..++
T Consensus 16 N~~~~~~l~~DK~~~~~l~~~~g-------i~vP~~i~~~~~~~~~~~~~~~~~~l~~~l~~----~~~~~~viKP~~G~ 84 (285)
T PF14397_consen 16 NPREYYPLLDDKLLFKQLFRDYG-------IPVPEAIFNVGRDYFDLREQHSIEDLEEFLRK----HAPDRFVIKPANGS 84 (285)
T ss_pred CchhhccccCCHHHHHHHHHHhc-------CCCCceEEeccceEEecccccCHHHHHHHHHh----ccCCcEEEEeCCCC
Confidence 55545567777777777666542 110011 1233332 21 233444433321 23478999999999
Q ss_pred CCCceEEeCChH---------HHHHhhc-cC--CceeeeeccC
Q psy14199 454 RSLDSYITDNIN---------MVIKSAL-TG--PKIIQKYIEN 484 (677)
Q Consensus 454 RG~GI~I~~~l~---------~I~r~~~-t~--p~VVQkYIen 484 (677)
+|+||.+.+..+ .+..... .+ .+|+|++|..
T Consensus 85 ~G~Gi~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~liqe~i~q 127 (285)
T PF14397_consen 85 GGKGILVIDRRDGSEINRDISALYAGLESLGGKDYLIQERIEQ 127 (285)
T ss_pred CccCEEEEEeecCcccccchhHHHHHHHhcCCccEEEEecccC
Confidence 999999987544 1211111 12 6899999975
No 28
>PRK08462 biotin carboxylase; Validated
Probab=87.87 E-value=1.4 Score=49.29 Aligned_cols=45 Identities=16% Similarity=0.131 Sum_probs=36.9
Q ss_pred CceEEEcCCCCCCCCceEEeCChHHHHHhh-----------ccCCceeeeeccCcc
Q psy14199 442 NNLWIIKPFNLARSLDSYITDNINMVIKSA-----------LTGPKIIQKYIENPI 486 (677)
Q Consensus 442 ~n~WIlKP~n~aRG~GI~I~~~l~~I~r~~-----------~t~p~VVQkYIenPl 486 (677)
+--+|+||..++.|+|++++++.+++.... ..++.++|+||+.|-
T Consensus 154 g~PvvvKP~~g~gs~Gv~~v~~~~eL~~~~~~~~~~~~~~~~~~~vlvEe~i~g~~ 209 (445)
T PRK08462 154 GYPVILKAAAGGGGRGMRVVEDESDLENLYLAAESEALSAFGDGTMYMEKFINNPR 209 (445)
T ss_pred CCCEEEEeCCCCCCCCeEEECCHHHHHHHHHHHHHHHHhccCCCcEEEeccCCCCe
Confidence 457999999999999999999999886542 124689999998763
No 29
>PRK08654 pyruvate carboxylase subunit A; Validated
Probab=87.45 E-value=1.5 Score=50.47 Aligned_cols=44 Identities=18% Similarity=0.180 Sum_probs=36.6
Q ss_pred CceEEEcCCCCCCCCceEEeCChHHHHHhhc-----------cCCceeeeeccCc
Q psy14199 442 NNLWIIKPFNLARSLDSYITDNINMVIKSAL-----------TGPKIIQKYIENP 485 (677)
Q Consensus 442 ~n~WIlKP~n~aRG~GI~I~~~l~~I~r~~~-----------t~p~VVQkYIenP 485 (677)
+--+|+||..++.|+||+++++.+++.+..+ .++.++|+||+.|
T Consensus 152 gyPvvIKp~~GgGG~Gv~iv~~~~eL~~a~~~~~~~a~~~f~~~~v~vE~~I~~~ 206 (499)
T PRK08654 152 GYPVIIKASAGGGGIGMRVVYSEEELEDAIESTQSIAQSAFGDSTVFIEKYLEKP 206 (499)
T ss_pred CCCEEEEeCCCCCCCeEEEeCCHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCCCC
Confidence 4579999999999999999999998765432 2468999999876
No 30
>PRK07206 hypothetical protein; Provisional
Probab=87.44 E-value=1.5 Score=48.44 Aligned_cols=83 Identities=16% Similarity=0.072 Sum_probs=54.1
Q ss_pred ccccchHHHHHHHHhHhhhhccCCCCCCCcccceeecC--hhHHHHHHHHhhhhhcCC-CceEEEcCCCCCCCCceEEeC
Q psy14199 386 ILTIKDLLSIVCRRNSKDIEKTTLQTSPDWLPTTYNLK--TELLKFMSYYQNREKKNL-NNLWIIKPFNLARSLDSYITD 462 (677)
Q Consensus 386 ~LtrKd~L~~~l~~~~~~~~~~~~~~~~~~~P~Tf~L~--~el~~f~~~~~~~~~~g~-~n~WIlKP~n~aRG~GI~I~~ 462 (677)
....|..+.+.+++. |. -.|+++.+. .|+.++++.. +. +.-.|+||..++.|+|+++++
T Consensus 105 ~~~dK~~~r~~l~~~-------gi-----~~p~~~~~~~~~e~~~~~~~~------g~~~~P~VvKP~~g~gs~gv~~v~ 166 (416)
T PRK07206 105 ARRNKAEMINALAEA-------GL-----PAARQINTADWEEAEAWLREN------GLIDRPVVIKPLESAGSDGVFICP 166 (416)
T ss_pred HhhCHHHHHHHHHHc-------CC-----CcccEEecCCHHHHHHHHHhc------CCCCCCEEEeCCCCCCCCCEEEeC
Confidence 345666666655543 22 246666554 4555544321 11 347899999999999999999
Q ss_pred ChHHHHHhhc------------cCCceeeeeccCcc
Q psy14199 463 NINMVIKSAL------------TGPKIIQKYIENPI 486 (677)
Q Consensus 463 ~l~~I~r~~~------------t~p~VVQkYIenPl 486 (677)
+.+++.+..+ ..+.++|+||+-|-
T Consensus 167 ~~~el~~~~~~~~~~~~~~~~~~~~~lvEe~i~G~E 202 (416)
T PRK07206 167 AKGDWKHAFNAILGKANKLGLVNETVLVQEYLIGTE 202 (416)
T ss_pred CHHHHHHHHHHHHhccccCCCCCCeEEEEEccccEE
Confidence 9998765432 24689999998653
No 31
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit. This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.
Probab=87.21 E-value=1.7 Score=48.81 Aligned_cols=44 Identities=27% Similarity=0.262 Sum_probs=36.5
Q ss_pred CceEEEcCCCCCCCCceEEeCChHHHHHhhc-----------cCCceeeeeccCc
Q psy14199 442 NNLWIIKPFNLARSLDSYITDNINMVIKSAL-----------TGPKIIQKYIENP 485 (677)
Q Consensus 442 ~n~WIlKP~n~aRG~GI~I~~~l~~I~r~~~-----------t~p~VVQkYIenP 485 (677)
+--+|+||..++.|+|++++++.+++.+..+ ..+.++|+||+.|
T Consensus 152 g~PvvvKP~~g~gs~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~i~g~ 206 (449)
T TIGR00514 152 GYPVIIKATAGGGGRGMRVVREPDELVKSISMTRAEAKAAFGNDGVYIEKYIENP 206 (449)
T ss_pred CCCEEEEeCCCCCCCccEEECCHHHHHHHHHHHHHHHHHhCCCCCEEEEECCCCC
Confidence 3468999999999999999999998866432 2468999999876
No 32
>PRK08463 acetyl-CoA carboxylase subunit A; Validated
Probab=86.45 E-value=1.9 Score=49.15 Aligned_cols=45 Identities=13% Similarity=0.091 Sum_probs=37.0
Q ss_pred CceEEEcCCCCCCCCceEEeCChHHHHHhhc-----------cCCceeeeeccCcc
Q psy14199 442 NNLWIIKPFNLARSLDSYITDNINMVIKSAL-----------TGPKIIQKYIENPI 486 (677)
Q Consensus 442 ~n~WIlKP~n~aRG~GI~I~~~l~~I~r~~~-----------t~p~VVQkYIenPl 486 (677)
+--.|+||..++.|+||++.++.+++....+ .++.++++||+.|-
T Consensus 152 gyPvvvKP~~ggGg~Gv~iv~~~~eL~~a~~~~~~~a~~~~~~~~vlvEefI~~~~ 207 (478)
T PRK08463 152 GYPVILKASGGGGGRGIRVVHKEEDLENAFESCKREALAYFNNDEVFMEKYVVNPR 207 (478)
T ss_pred CCCEEEEeCCCCCCCceEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEecCCCCe
Confidence 4569999999999999999999998865432 35689999998763
No 33
>PRK14571 D-alanyl-alanine synthetase A; Provisional
Probab=84.97 E-value=0.96 Score=47.90 Aligned_cols=44 Identities=23% Similarity=0.345 Sum_probs=36.0
Q ss_pred CCceEEEcCCCCCCCCceEEeCChHHHHHhhc-----cCCceeeeeccC
Q psy14199 441 LNNLWIIKPFNLARSLDSYITDNINMVIKSAL-----TGPKIIQKYIEN 484 (677)
Q Consensus 441 ~~n~WIlKP~n~aRG~GI~I~~~l~~I~r~~~-----t~p~VVQkYIen 484 (677)
.+--||+||..++-|.|+.++++.+++.+..+ .++.+||+||+-
T Consensus 124 l~~P~vvKP~~g~~s~Gv~~v~~~~el~~~~~~~~~~~~~vlVEeyI~G 172 (299)
T PRK14571 124 LGYPCVVKPRREGSSIGVFICESDEEFQHALKEDLPRYGSVIVQEYIPG 172 (299)
T ss_pred cCCCEEEecCCCCCcCCEEEECCHHHHHHHHHHHHhhCCcEEEEccccc
Confidence 35679999999999999999999988765432 256899999973
No 34
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=84.12 E-value=2.5 Score=47.33 Aligned_cols=44 Identities=20% Similarity=0.142 Sum_probs=36.1
Q ss_pred CceEEEcCCCCCCCCceEEeCChHHHHHhhc-----------cCCceeeeeccCc
Q psy14199 442 NNLWIIKPFNLARSLDSYITDNINMVIKSAL-----------TGPKIIQKYIENP 485 (677)
Q Consensus 442 ~n~WIlKP~n~aRG~GI~I~~~l~~I~r~~~-----------t~p~VVQkYIenP 485 (677)
+--+|+||..++.|+|++++++.+++.+..+ ....++|+||+.+
T Consensus 152 g~PvvvKP~~g~gs~Gv~iv~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~i~g~ 206 (451)
T PRK08591 152 GYPVIIKATAGGGGRGMRVVRTEAELEKAFSMARAEAKAAFGNPGVYMEKYLENP 206 (451)
T ss_pred CCCEEEEECCCCCCceEEEECCHHHHHHHHHHHHHHHHHhcCCCCEEEEeCCCCC
Confidence 3568999999999999999999998865443 2458999999865
No 35
>PRK06849 hypothetical protein; Provisional
Probab=83.90 E-value=3.1 Score=45.75 Aligned_cols=83 Identities=18% Similarity=0.243 Sum_probs=55.7
Q ss_pred cccccchHHHHHHHHhHhhhhccCCCCCCCcccceeecC--hhHHHHHHHHhhhhhcCCCceEEEcCCCCCCCCceEEeC
Q psy14199 385 YILTIKDLLSIVCRRNSKDIEKTTLQTSPDWLPTTYNLK--TELLKFMSYYQNREKKNLNNLWIIKPFNLARSLDSYITD 462 (677)
Q Consensus 385 ~~LtrKd~L~~~l~~~~~~~~~~~~~~~~~~~P~Tf~L~--~el~~f~~~~~~~~~~g~~n~WIlKP~n~aRG~GI~I~~ 462 (677)
..+..|..+.+.+++.. . =+|+|+.+. .++.++.. +..+.-+|+||..++-|.|+.+..
T Consensus 112 ~~~~DK~~~~~~~~~~G-------i-----pvP~t~~v~~~~~l~~~~~-------~~~~~P~vlKP~~~~~~~~v~~~~ 172 (389)
T PRK06849 112 LLLHNKWEFAEQARSLG-------L-----SVPKTYLITDPEAIRNFMF-------KTPHTPYVLKPIYSRFVRRVDLLP 172 (389)
T ss_pred HHhhCHHHHHHHHHHcC-------C-----CCCCEEEeCCHHHHHHHhh-------cCCCCcEEEEeCcccCCCeEEEec
Confidence 45677777777666532 2 258888765 33333321 122568999999999999999998
Q ss_pred ChHHHHHhhc--cCCceeeeeccCcc
Q psy14199 463 NINMVIKSAL--TGPKIIQKYIENPI 486 (677)
Q Consensus 463 ~l~~I~r~~~--t~p~VVQkYIenPl 486 (677)
+.+.+..... ..|+|+|+||+-+-
T Consensus 173 ~~~~l~~~~~~~~~~~ivQe~I~G~e 198 (389)
T PRK06849 173 KEAALKELPISKDNPWVMQEFIQGKE 198 (389)
T ss_pred CHHHhcccccCCCCCeEEEEEecCCe
Confidence 8666544322 24799999998764
No 36
>PF00856 SET: SET domain; InterPro: IPR001214 The SET domain appears generally as one part of a larger multidomain protein, and recently there were described three structures of very different proteins with distinct domain compositions: Neurospora crassa DIM-5, a member of the Su(var) family of HKMTs which methylate histone H3 on lysine 9,human SET7 (also called SET9), which methylates H3 on lysine 4 and garden pea Rubisco LSMT, an enzyme that does not modify histones, but instead methylates lysine 14 in the flexible tail of the large subunit of the enzyme Rubisco. The SET domain itself turned out to be an uncommon structure. Although in all three studies, electron density maps revealed the location of the AdoMet or AdoHcy cofactor, the SET domain bears no similarity at all to the canonical/AdoMet-dependent methyltransferase fold. Strictly conserved in the C-terminal motif of the SET domain tyrosine could be involved in abstracting a proton from the protonated amino group of the substrate lysine, promoting its nucleophilic attack on the sulphonium methyl group of the AdoMet cofactor. In contrast to the AdoMet-dependent protein methyltranferases of the classical type, which tend to bind their polypeptide substrates on top of the cofactor, it is noted from the Rubisco LSMT structure that the AdoMet seems to bind in a separate cleft, suggesting how a polypeptide substrate could be subjected to multiple rounds of methylation without having to be released from the enzyme. In contrast, SET7/9 is able to add only a single methyl group to its substrate. It has been demonstrated that association of SET domain and myotubularin-related proteins modulates growth control []. The SET domain-containing Drosophila melanogaster (Fruit fly) protein, enhancer of zeste, has a function in segment determination and the mammalian homologue may be involved in the regulation of gene transcription and chromatin structure. Histone lysine methylation is part of the histone code that regulated chromatin function and epigenetic control of gene function. Histone lysine methyltransferases (HMTase) differ both in their substrate specificity for the various acceptor lysines as well as in their product specificity for the number of methyl groups (one, two, or three) they transfer. With just one exception [], the HMTases belong to SET family that can be classified according to the sequences surrounding the SET domain [, ]. Structural studies on the human SET7/9, a mono-methylase, have revealed the molecular basis for the specificity of the enzyme for the histone-target and the roles of the invariant residues in the SET domain in determining the methylation specificities []. The pre-SET domain, as found in the SUV39 SET family, contains nine invariant cysteine residues that are grouped into two segments separated by a region of variable length. These 9 cysteines coordinate 3 zinc ions to form to form a triangular cluster, where each of the zinc ions is coordinated by 4 four cysteines to give a tetrahedral configuration. The function of this domain is structural, holding together 2 long segments of random coils. The C-terminal region including the post-SET domain is disordered when not interacting with a histone tail and in the absence of zinc. The three conserved cysteines in the post-SET domain form a zinc-binding site when coupled to a fourth conserved cysteine in the knot-like structure close to the SET domain active site []. The structured post-SET region brings in the C-terminal residues that participate in S-adenosylmethine-binding and histone tail interactions. The three conserved cysteine residues are essential for HMTase activity, as replacement with serine abolishes HMTase activity [], []. ; GO: 0005515 protein binding; PDB: 3TG5_A 3S7F_A 3RIB_B 3TG4_A 3S7J_A 3S7D_A 3S7B_A 3H6L_A 3SMT_A 3K5K_A ....
Probab=83.87 E-value=13 Score=33.90 Aligned_cols=51 Identities=18% Similarity=0.184 Sum_probs=36.5
Q ss_pred eEeeecccccccccCCCCCeeeeeeEecCCCcEEEEEeeeeecceeeeeeecccCCeEEEeec
Q psy14199 155 VWYIMDEFGSAIQHSDEPNMRIVPFIYLNEGIAYSILYPIIIKILIFVKFCYILGSLILTIDY 217 (677)
Q Consensus 155 ~WYi~De~Gs~i~hsd~pn~~~~pf~~~~~~~~ys~l~p~~~~~~~~~~~~~~~g~~~~trd~ 217 (677)
.-..|=-+++-++||-.||+.+.+-.. +.+..+ .+--+++ |. .|| |||-.|
T Consensus 111 ~~~~l~p~~d~~NHsc~pn~~~~~~~~-~~~~~~-~~~a~r~-------I~--~Ge-Ei~isY 161 (162)
T PF00856_consen 111 DGIALYPFADMLNHSCDPNCEVSFDFD-GDGGCL-VVRATRD-------IK--KGE-EIFISY 161 (162)
T ss_dssp EEEEEETGGGGSEEESSTSEEEEEEEE-TTTTEE-EEEESS--------B---TTS-BEEEES
T ss_pred cccccCcHhHheccccccccceeeEee-cccceE-EEEECCc-------cC--CCC-EEEEEE
Confidence 345556679999999999999887655 333333 3456788 88 999 999876
No 37
>PRK12999 pyruvate carboxylase; Reviewed
Probab=82.99 E-value=2.5 Score=53.45 Aligned_cols=45 Identities=16% Similarity=0.127 Sum_probs=37.1
Q ss_pred CceEEEcCCCCCCCCceEEeCChHHHHHhhc-----------cCCceeeeeccCcc
Q psy14199 442 NNLWIIKPFNLARSLDSYITDNINMVIKSAL-----------TGPKIIQKYIENPI 486 (677)
Q Consensus 442 ~n~WIlKP~n~aRG~GI~I~~~l~~I~r~~~-----------t~p~VVQkYIenPl 486 (677)
+--+|+||..++.|+|++++++.+++....+ .++.++|+||+.|-
T Consensus 156 GyPvVVKP~~GgGGrGv~vV~~~eEL~~a~~~a~~ea~~~fg~~~vlVEefI~g~~ 211 (1146)
T PRK12999 156 GYPIMLKASAGGGGRGMRIVRSEEELEEAFERAKREAKAAFGNDEVYLEKYVENPR 211 (1146)
T ss_pred CCCEEEEECCCCCCCCeEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEecCCCCCe
Confidence 4579999999999999999999998765332 35689999998863
No 38
>TIGR01205 D_ala_D_alaTIGR D-alanine--D-alanine ligase. but a number of antibiotic resistance proteins score above the trusted cutoff of this model.
Probab=82.85 E-value=1.8 Score=45.84 Aligned_cols=43 Identities=14% Similarity=0.144 Sum_probs=35.5
Q ss_pred CCceEEEcCCCCCCCCceEEeCChHHHHHhhc-----cCCceeeeecc
Q psy14199 441 LNNLWIIKPFNLARSLDSYITDNINMVIKSAL-----TGPKIIQKYIE 483 (677)
Q Consensus 441 ~~n~WIlKP~n~aRG~GI~I~~~l~~I~r~~~-----t~p~VVQkYIe 483 (677)
.+--+|+||..++.|.|+.+.++.+++.+..+ ..+.+||+||+
T Consensus 145 ~~~P~vvKP~~~~~s~Gv~~v~~~~el~~~~~~~~~~~~~~lvEe~i~ 192 (315)
T TIGR01205 145 LGFPVIVKPAREGSSVGVSKVKSEEELQAALDEAFEYDEEVLVEQFIK 192 (315)
T ss_pred cCCCEEEEeCCCCCccCEEEECCHHHHHHHHHHHHhcCCcEEEEcCCC
Confidence 34579999999999999999999988866432 35789999995
No 39
>TIGR00877 purD phosphoribosylamine--glycine ligase. This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes.
Probab=82.63 E-value=3.1 Score=46.19 Aligned_cols=41 Identities=15% Similarity=0.236 Sum_probs=33.8
Q ss_pred EEEcCCCCCCCCceEEeCChHHHHHhhc----------cCCceeeeeccCc
Q psy14199 445 WIIKPFNLARSLDSYITDNINMVIKSAL----------TGPKIIQKYIENP 485 (677)
Q Consensus 445 WIlKP~n~aRG~GI~I~~~l~~I~r~~~----------t~p~VVQkYIenP 485 (677)
+|+||..++.|+|++++++.+++.+... ..+.++|+||+-+
T Consensus 143 ~VvKp~~~~gg~Gv~~v~~~~el~~~~~~~~~~~~g~~~~~~lvEe~i~G~ 193 (423)
T TIGR00877 143 IVVKADGLAAGKGVIVAKTNEEAIKAVEEILEQKFGDAGERVVIEEFLDGE 193 (423)
T ss_pred EEEEECCCCCCCCEEEECCHHHHHHHHHHHHHHhcCCCCCeEEEEECccCc
Confidence 9999999999999999999988755321 2468999999865
No 40
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=82.51 E-value=1.5 Score=46.15 Aligned_cols=42 Identities=14% Similarity=0.186 Sum_probs=34.7
Q ss_pred CceEEEcCCCCCCCCceEEeCChHHHHHhhc-----cCCceeeeecc
Q psy14199 442 NNLWIIKPFNLARSLDSYITDNINMVIKSAL-----TGPKIIQKYIE 483 (677)
Q Consensus 442 ~n~WIlKP~n~aRG~GI~I~~~l~~I~r~~~-----t~p~VVQkYIe 483 (677)
+--+|+||..++.|.|+.++++.+++.+..+ ..+.++|+||.
T Consensus 133 ~~P~ivKP~~g~~s~Gv~~v~~~~el~~~~~~~~~~~~~~lvEe~i~ 179 (304)
T PRK01372 133 GLPLVVKPAREGSSVGVSKVKEEDELQAALELAFKYDDEVLVEKYIK 179 (304)
T ss_pred CCCEEEeeCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCcEEEEcccC
Confidence 3468999999999999999999988765432 35789999997
No 41
>KOG2157|consensus
Probab=82.09 E-value=0.89 Score=52.27 Aligned_cols=53 Identities=30% Similarity=0.426 Sum_probs=41.9
Q ss_pred ccceeEEEEEeeccchhhhhhcccccccCCCCCceeeEEEEEEEeeccCcEEEEEccceeeccccCCCC
Q psy14199 498 KFDVRYVVLVKSVKPLKVYLYKNFFLRDDLSGKVKFDVRYVVLVKSVKPLKVYLYKNFFLRFANKPFEL 566 (677)
Q Consensus 498 kfd~r~~vl~~~~~~~~~~~~~~~~~~~~~~~grKFDlR~YVLVtSv~PL~vYly~~glvRfAt~~Y~l 566 (677)
|||+|.||++.+..|+.+|+| |++.+|+++. ..+| .+++++ -++.+|+..+..
T Consensus 259 KfDlR~~vlvt~~~pl~~y~y------------reg~lRf~t~--~y~~-~~nl~n-~~~HLtN~siqK 311 (497)
T KOG2157|consen 259 KFDLRQYVLVTHFDPLLLYRY------------REGFLRFSTE--PYGP-LVNLQN-MSVHLTNVSIQK 311 (497)
T ss_pred eeeeeEEEEeecccchhheee------------ccceEEEEec--cCcc-hhhhcc-cchhhhcccccc
Confidence 789999999999999888764 5677888877 4456 677887 888888876654
No 42
>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP.
Probab=81.71 E-value=2.8 Score=45.49 Aligned_cols=42 Identities=12% Similarity=0.091 Sum_probs=34.5
Q ss_pred CceEEEcCCCCC-CCCceEEeCChHHHHHhhc---cCCceeeeecc
Q psy14199 442 NNLWIIKPFNLA-RSLDSYITDNINMVIKSAL---TGPKIIQKYIE 483 (677)
Q Consensus 442 ~n~WIlKP~n~a-RG~GI~I~~~l~~I~r~~~---t~p~VVQkYIe 483 (677)
+--+|+||..++ .|+|+.++++.+++....+ ..+.++|+||+
T Consensus 133 g~P~vvKp~~~g~~g~Gv~~v~~~~el~~a~~~~~~~~~lvEe~I~ 178 (352)
T TIGR01161 133 GFPVVLKARTGGYDGRGQYRIRNEADLPQAAKELGDRECIVEEFVP 178 (352)
T ss_pred CCCEEEEeCCCCCCCCCEEEECCHHHHHHHHHhcCCCcEEEEecCC
Confidence 457999999975 8999999999998865443 34789999997
No 43
>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103. Members of this protein family belong to the GNAT family of acetyltransferases. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and an asparagine synthetase family protein.
Probab=81.38 E-value=2.2 Score=49.72 Aligned_cols=39 Identities=8% Similarity=0.187 Sum_probs=32.1
Q ss_pred EEEcCCCCCCCCceEE-eCChHHHHHhhc-----cCCceeeeecc
Q psy14199 445 WIIKPFNLARSLDSYI-TDNINMVIKSAL-----TGPKIIQKYIE 483 (677)
Q Consensus 445 WIlKP~n~aRG~GI~I-~~~l~~I~r~~~-----t~p~VVQkYIe 483 (677)
-|+||..++.|+||.+ .++.+++.+..+ ....++|+||.
T Consensus 334 vVVKP~~G~~G~Gv~v~v~~~~eL~~a~~~a~~~~~~vlvEe~i~ 378 (547)
T TIGR03103 334 VVVKPVRGEQGKGISVDVRTPDDLEAAIAKARQFCDRVLLERYVP 378 (547)
T ss_pred EEEEECCCCCCcCeEEecCCHHHHHHHHHHHHhcCCcEEEEEecc
Confidence 7999999999999998 788888765432 34689999995
No 44
>PRK12833 acetyl-CoA carboxylase biotin carboxylase subunit; Provisional
Probab=80.98 E-value=4.6 Score=45.91 Aligned_cols=44 Identities=9% Similarity=0.094 Sum_probs=36.4
Q ss_pred CceEEEcCCCCCCCCceEEeCChHHHHHhh-----------ccCCceeeeeccCc
Q psy14199 442 NNLWIIKPFNLARSLDSYITDNINMVIKSA-----------LTGPKIIQKYIENP 485 (677)
Q Consensus 442 ~n~WIlKP~n~aRG~GI~I~~~l~~I~r~~-----------~t~p~VVQkYIenP 485 (677)
+--+|+||..++.|+|++++++.+++.... ..+..++|+||+.+
T Consensus 155 gyPvvvKp~~gggg~Gv~~v~~~~eL~~a~~~~~~~~~~~~~~~~vlvEefi~~~ 209 (467)
T PRK12833 155 GYPLMIKAAAGGGGRGIRVAHDAAQLAAELPLAQREAQAAFGDGGVYLERFIARA 209 (467)
T ss_pred CCCEEEEECCCCCCCeEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEEecCCCC
Confidence 457999999999999999999999886532 13568999999865
No 45
>PRK02186 argininosuccinate lyase; Provisional
Probab=80.93 E-value=3.8 Score=50.35 Aligned_cols=63 Identities=19% Similarity=0.211 Sum_probs=45.4
Q ss_pred ccceeecCh--hHHHHHHHHhhhhhcCCCceEEEcCCCCCCCCceEEeCChHHHHHhhc------cCCceeeeeccCcc
Q psy14199 416 LPTTYNLKT--ELLKFMSYYQNREKKNLNNLWIIKPFNLARSLDSYITDNINMVIKSAL------TGPKIIQKYIENPI 486 (677)
Q Consensus 416 ~P~Tf~L~~--el~~f~~~~~~~~~~g~~n~WIlKP~n~aRG~GI~I~~~l~~I~r~~~------t~p~VVQkYIenPl 486 (677)
.|.++.+.. |+.++.+. .+--+|+||..++.|.|++++++.+++....+ ++++++|+||+-|-
T Consensus 122 ~P~~~~v~~~~e~~~~~~~--------~~~PvVVKP~~g~gS~GV~~v~~~~el~~a~~~~~~~~~~~~lvEEfI~G~E 192 (887)
T PRK02186 122 VPRTHALALRAVALDALDG--------LTYPVVVKPRMGSGSVGVRLCASVAEAAAHCAALRRAGTRAALVQAYVEGDE 192 (887)
T ss_pred CCCEEEeCCHHHHHHHHHh--------CCCCEEEEeCCCCCCCCeEEECCHHHHHHHHHHHHhcCCCcEEEeecccCCc
Confidence 366666543 44443321 24468999999999999999999998865432 46799999998654
No 46
>COG0439 AccC Biotin carboxylase [Lipid metabolism]
Probab=80.60 E-value=1.8 Score=49.42 Aligned_cols=44 Identities=16% Similarity=0.086 Sum_probs=37.0
Q ss_pred ceEEEcCCCCCCCCceEEeCChHHHHHhhc-----------cCCceeeeeccCcc
Q psy14199 443 NLWIIKPFNLARSLDSYITDNINMVIKSAL-----------TGPKIIQKYIENPI 486 (677)
Q Consensus 443 n~WIlKP~n~aRG~GI~I~~~l~~I~r~~~-----------t~p~VVQkYIenPl 486 (677)
--=|+||..++.|+||+++++.+++....+ +....++|||++|-
T Consensus 153 yPVivKa~~GgGg~G~r~v~~~~el~~a~~~~~~ea~~~fg~~~v~iEk~i~~~r 207 (449)
T COG0439 153 YPVIVKAAAGGGGRGMRVVRNEEELEAAFEAARGEAEAAFGNPRVYLEKFIEGPR 207 (449)
T ss_pred CCEEEEECCCCCcccEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEeeeeccCCc
Confidence 567999999999999999999999876542 23389999999994
No 47
>PRK05586 biotin carboxylase; Validated
Probab=80.55 E-value=1.7 Score=48.82 Aligned_cols=44 Identities=23% Similarity=0.206 Sum_probs=36.5
Q ss_pred CceEEEcCCCCCCCCceEEeCChHHHHHhhc-----------cCCceeeeeccCc
Q psy14199 442 NNLWIIKPFNLARSLDSYITDNINMVIKSAL-----------TGPKIIQKYIENP 485 (677)
Q Consensus 442 ~n~WIlKP~n~aRG~GI~I~~~l~~I~r~~~-----------t~p~VVQkYIenP 485 (677)
+---|+||..++.|+|++++++.+++.+..+ .++.++|+||+.|
T Consensus 152 gyPvvvKP~~gggg~Gv~~v~~~~el~~a~~~~~~~~~~~~~~~~vivEe~i~g~ 206 (447)
T PRK05586 152 GYPVMVKASAGGGGRGIRIVRSEEELIKAFNTAKSEAKAAFGDDSMYIEKFIENP 206 (447)
T ss_pred CCCEEEEECCCCCCCeeEEECCHHHHHHHHHHHHHHHHHhcCCCeEEEEecCCCC
Confidence 4568999999999999999999998865432 3578999999876
No 48
>PRK00885 phosphoribosylamine--glycine ligase; Provisional
Probab=80.06 E-value=4.8 Score=44.80 Aligned_cols=44 Identities=9% Similarity=0.144 Sum_probs=35.2
Q ss_pred CceEEEcCCCCCCCCceEEeCChHHHHHhhc-----------cCCceeeeeccCc
Q psy14199 442 NNLWIIKPFNLARSLDSYITDNINMVIKSAL-----------TGPKIIQKYIENP 485 (677)
Q Consensus 442 ~n~WIlKP~n~aRG~GI~I~~~l~~I~r~~~-----------t~p~VVQkYIenP 485 (677)
+--.|+||..++.|+|++++++.+++....+ ..+.+||+||+-+
T Consensus 137 ~~P~VvKP~~~~gs~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~i~G~ 191 (420)
T PRK00885 137 GAPIVVKADGLAAGKGVVVAMTLEEAKAAVDDMLAGNKFGDAGARVVIEEFLDGE 191 (420)
T ss_pred CCCEEEEeCCCCCCCcEEEeCCHHHHHHHHHHHhhcccccCCCCeEEEEEccCCc
Confidence 3468999999999999999999988755321 2468999999865
No 49
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=79.60 E-value=4.2 Score=51.39 Aligned_cols=44 Identities=18% Similarity=0.068 Sum_probs=36.3
Q ss_pred CceEEEcCCCCCCCCceEEeCChHHHHHhhc-----------cCCceeeeeccCc
Q psy14199 442 NNLWIIKPFNLARSLDSYITDNINMVIKSAL-----------TGPKIIQKYIENP 485 (677)
Q Consensus 442 ~n~WIlKP~n~aRG~GI~I~~~l~~I~r~~~-----------t~p~VVQkYIenP 485 (677)
+--+|+||..++.|+|++++++.+++....+ .++.++|+||+.|
T Consensus 152 GyPvIVKP~~GGGGrG~riV~~~eEL~~a~~~a~~ea~~~fg~~~vlIEefI~g~ 206 (1143)
T TIGR01235 152 GYPVIIKASWGGGGRGMRVVRSEADVADAFQRAKSEAKAAFGNDEVYVEKLIERP 206 (1143)
T ss_pred CCCEEEEECCCCCCCccEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEEcCCCC
Confidence 4569999999999999999999988765321 3468999999876
No 50
>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2. This enzyme is an alternative to PurN (TIGR00639)
Probab=79.36 E-value=2.3 Score=46.33 Aligned_cols=43 Identities=14% Similarity=0.205 Sum_probs=35.8
Q ss_pred CceEEEcCCCCCCCCceEEeCChHHHHHhhc---------cCCceeeeeccC
Q psy14199 442 NNLWIIKPFNLARSLDSYITDNINMVIKSAL---------TGPKIIQKYIEN 484 (677)
Q Consensus 442 ~n~WIlKP~n~aRG~GI~I~~~l~~I~r~~~---------t~p~VVQkYIen 484 (677)
+--.|+||..++-|+|+.++++.+++.+..+ ++++|+|+||+.
T Consensus 136 g~P~VvKP~~g~~s~gv~~v~~~~el~~~~~~~~~~~~~~~~~~ivEe~i~~ 187 (380)
T TIGR01142 136 GYPCVVKPVMSSSGKGQSVVRGPEDIEKAWEYAQEGARGGAGRVIVEEFIDF 187 (380)
T ss_pred CCCEEEEECCCcCCCCeEEECCHHHHHHHHHHHHhhccCCCCCEEEEEecCC
Confidence 4579999999999999999999998866432 246899999974
No 51
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=78.29 E-value=2.3 Score=46.47 Aligned_cols=42 Identities=14% Similarity=0.238 Sum_probs=35.1
Q ss_pred CceEEEcCCCCCCCCceEEeCChHHHHHhhc---------cCCceeeeecc
Q psy14199 442 NNLWIIKPFNLARSLDSYITDNINMVIKSAL---------TGPKIIQKYIE 483 (677)
Q Consensus 442 ~n~WIlKP~n~aRG~GI~I~~~l~~I~r~~~---------t~p~VVQkYIe 483 (677)
+--.|+||..++.|+|+.++++.+++.+..+ +.+.|||+||+
T Consensus 149 g~P~VvKP~~g~~s~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~lvEefi~ 199 (395)
T PRK09288 149 GYPCVVKPVMSSSGKGQSVVRSPEDIEKAWEYAQEGGRGGAGRVIVEEFID 199 (395)
T ss_pred CCCEEEEeCCCcCCCCeEEECCHHHHHHHHHHHHhhccccCCCEEEEEecC
Confidence 4578999999999999999999998865432 25789999997
No 52
>PRK06111 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=77.80 E-value=2.6 Score=47.14 Aligned_cols=44 Identities=20% Similarity=0.275 Sum_probs=36.3
Q ss_pred CceEEEcCCCCCCCCceEEeCChHHHHHhhc-----------cCCceeeeeccCc
Q psy14199 442 NNLWIIKPFNLARSLDSYITDNINMVIKSAL-----------TGPKIIQKYIENP 485 (677)
Q Consensus 442 ~n~WIlKP~n~aRG~GI~I~~~l~~I~r~~~-----------t~p~VVQkYIenP 485 (677)
+--+|+||..++.|+|+.++++.+++.+..+ .++.++|+||+.|
T Consensus 152 ~~P~VvKP~~g~gs~Gv~iv~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~i~g~ 206 (450)
T PRK06111 152 GYPVMLKASAGGGGIGMQLVETEQELTKAFESNKKRAANFFGNGEMYIEKYIEDP 206 (450)
T ss_pred CCCEEEEeCCCCCCceEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEEcccCCC
Confidence 4569999999999999999999998865432 3468999999865
No 53
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=77.78 E-value=2.3 Score=45.32 Aligned_cols=42 Identities=14% Similarity=0.232 Sum_probs=34.8
Q ss_pred CceEEEcCCCCCCCCceEEeCChHHHHHhhc----cCCceeeeecc
Q psy14199 442 NNLWIIKPFNLARSLDSYITDNINMVIKSAL----TGPKIIQKYIE 483 (677)
Q Consensus 442 ~n~WIlKP~n~aRG~GI~I~~~l~~I~r~~~----t~p~VVQkYIe 483 (677)
+--+|+||..++.|.|+.++++.+++.+..+ ..+.+||+||+
T Consensus 130 ~~P~vVKP~~ggss~Gv~~v~~~~eL~~a~~~~~~~~~~lvEefI~ 175 (296)
T PRK14569 130 SFPVAVKPSSGGSSIATFKVKSIQELKHAYEEASKYGEVMIEQWVT 175 (296)
T ss_pred CCCEEEEeCCCCCCcCeEEcCCHHHHHHHHHHHHhcCCEEEEcccc
Confidence 4569999999999999999999998865443 24689999996
No 54
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=77.63 E-value=9 Score=48.12 Aligned_cols=43 Identities=19% Similarity=0.224 Sum_probs=35.8
Q ss_pred CceEEEcCCCCCCCCceEEeCChHHHHHhhc-------cCCceeeeeccC
Q psy14199 442 NNLWIIKPFNLARSLDSYITDNINMVIKSAL-------TGPKIIQKYIEN 484 (677)
Q Consensus 442 ~n~WIlKP~n~aRG~GI~I~~~l~~I~r~~~-------t~p~VVQkYIen 484 (677)
+--+|+||..+..|+|+.++++.+++.+..+ ..|.++|+||++
T Consensus 704 gyPvIVKP~~~~Gg~gv~iv~~~eeL~~~l~~a~~~s~~~~vlVeefI~~ 753 (1050)
T TIGR01369 704 GYPVLVRPSYVLGGRAMEIVYNEEELRRYLEEAVEVSPEHPVLIDKYLED 753 (1050)
T ss_pred CCCEEEEECCCCCCCCeEEECCHHHHHHHHHHHHHhCCCCCEEEeecCCC
Confidence 4568999999999999999999988866432 367999999973
No 55
>PRK13278 purP 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase; Provisional
Probab=76.87 E-value=2.4 Score=46.95 Aligned_cols=43 Identities=16% Similarity=0.107 Sum_probs=35.4
Q ss_pred ceEEEcCCCCCCCCceEEeCChHHHHHhhc----------cCCceeeeeccCc
Q psy14199 443 NLWIIKPFNLARSLDSYITDNINMVIKSAL----------TGPKIIQKYIENP 485 (677)
Q Consensus 443 n~WIlKP~n~aRG~GI~I~~~l~~I~r~~~----------t~p~VVQkYIenP 485 (677)
..-|+||..++.|+|+++.++.+++.+..+ ....++|+||.=+
T Consensus 150 ~PvIVKp~~g~ggkGv~i~~s~~El~~~~~~l~~~~~~~~~~~~iIEEfI~G~ 202 (358)
T PRK13278 150 RPVIVKLPGAKGGRGYFIAKSPEEFKEKIDKLIERGLITEVEEAIIQEYVVGV 202 (358)
T ss_pred CCEEEEeCCCCCCCCeEEeCCHHHHHHHHHHHHhccccCCCCeEEEEecCCCc
Confidence 467999999999999999999988765432 3568999999754
No 56
>TIGR01435 glu_cys_lig_rel glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type. gamma-glutamyltripeptides of the form gamma-Glu-Cys-X(aa). The N-terminal region is similar to proteobacterial glutamate-cysteine ligase. The C-terminal region is homologous to cyanophycin synthetase of cyanobacteria and, more distantly, to D-alanine-D-alanine ligases. Members of this family are found in Listeria and Enterococcus, Gram-positive lineages in which glutathione is produced (see PUBMED:8606174), and in Pasteurella multocida, a Proteobacterium. In Clostridium acetobutylicum, adjacent genes include separate proteins rather than a fusion protein.
Probab=76.79 E-value=16 Score=44.26 Aligned_cols=40 Identities=18% Similarity=0.248 Sum_probs=30.2
Q ss_pred eEEEcCCCCCCCCceEEeCC---hHHHHHhhc-----cCCceeeeecc
Q psy14199 444 LWIIKPFNLARSLDSYITDN---INMVIKSAL-----TGPKIIQKYIE 483 (677)
Q Consensus 444 ~WIlKP~n~aRG~GI~I~~~---l~~I~r~~~-----t~p~VVQkYIe 483 (677)
--++||.+++.|+||.++.+ .+++.+... ....|||+||.
T Consensus 513 PVVVKP~~g~~G~GVsi~~~~~~~eel~~Al~~A~~~~~~VLVEefI~ 560 (737)
T TIGR01435 513 AIVVKPKSTNYGLGITIFKNGFTLEDFQEALNIAFSEDSSVIIEEFLP 560 (737)
T ss_pred CEEEeeCCCCCcCCeEEecCcCCHHHHHHHHHHHHhcCCeEEEEeccc
Confidence 46999999999999999876 455543321 34579999995
No 57
>PRK07178 pyruvate carboxylase subunit A; Validated
Probab=76.39 E-value=6.8 Score=44.61 Aligned_cols=44 Identities=11% Similarity=0.052 Sum_probs=35.9
Q ss_pred CceEEEcCCCCCCCCceEEeCChHHHHHhhc-----------cCCceeeeeccCc
Q psy14199 442 NNLWIIKPFNLARSLDSYITDNINMVIKSAL-----------TGPKIIQKYIENP 485 (677)
Q Consensus 442 ~n~WIlKP~n~aRG~GI~I~~~l~~I~r~~~-----------t~p~VVQkYIenP 485 (677)
+--.|+||..++.|+|++++++.+++.+..+ ..+.++++||..|
T Consensus 151 gyPvvvKp~~ggGg~Gv~~v~~~~eL~~a~~~~~~~~~~~~~~~~v~iE~~i~~~ 205 (472)
T PRK07178 151 GYPVMLKATSGGGGRGIRRCNSREELEQNFPRVISEATKAFGSAEVFLEKCIVNP 205 (472)
T ss_pred CCcEEEEeCCCCCCCCceEeCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCCC
Confidence 4568999999999999999999999865321 2468999999776
No 58
>PRK14016 cyanophycin synthetase; Provisional
Probab=75.79 E-value=3.9 Score=49.31 Aligned_cols=42 Identities=12% Similarity=0.209 Sum_probs=34.2
Q ss_pred CceEEEcCCCCCCCCceEE-eCChHHHHHhhc-----cCCceeeeecc
Q psy14199 442 NNLWIIKPFNLARSLDSYI-TDNINMVIKSAL-----TGPKIIQKYIE 483 (677)
Q Consensus 442 ~n~WIlKP~n~aRG~GI~I-~~~l~~I~r~~~-----t~p~VVQkYIe 483 (677)
+---|+||..++.|+|+.+ .++.+++....+ ..+.+||+||.
T Consensus 249 G~PvVVKP~~G~~G~GV~~~v~~~~el~~a~~~a~~~~~~viVEe~I~ 296 (727)
T PRK14016 249 GYPVVVKPLDGNHGRGVTVNITTREEIEAAYAVASKESSDVIVERYIP 296 (727)
T ss_pred CCCEEEEECCCCCCCceEEecCCHHHHHHHHHHHHHhCCeEEEEEecC
Confidence 4567999999999999998 888888765432 35789999996
No 59
>PRK14572 D-alanyl-alanine synthetase A; Provisional
Probab=75.25 E-value=3.1 Score=45.29 Aligned_cols=42 Identities=14% Similarity=0.219 Sum_probs=35.0
Q ss_pred CceEEEcCCCCCCCCceEEeCChHHHHHhhc-----cCCceeeeecc
Q psy14199 442 NNLWIIKPFNLARSLDSYITDNINMVIKSAL-----TGPKIIQKYIE 483 (677)
Q Consensus 442 ~n~WIlKP~n~aRG~GI~I~~~l~~I~r~~~-----t~p~VVQkYIe 483 (677)
+--+|+||..++.+.||.++++.+++.+..+ ..+.+||+||+
T Consensus 171 ~~PvvVKP~~ggsS~GV~~v~~~~el~~a~~~~~~~~~~vlVEefI~ 217 (347)
T PRK14572 171 GFPQFLKPVEGGSSVSTYKITNAEQLMTLLALIFESDSKVMSQSFLS 217 (347)
T ss_pred CCCEEEecCCCCCCCCEEEECCHHHHHHHHHHHHhcCCCEEEEcCcc
Confidence 4579999999999999999999998866443 25689999996
No 60
>PF05770 Ins134_P3_kin: Inositol 1, 3, 4-trisphosphate 5/6-kinase; InterPro: IPR008656 This entry represents inositol-tetrakisphosphate 1-kinase which is also called inositol 1,3,4-trisphosphate 5/6-kinase. Inositol-tetrakisphosphate 1-kinase can phosphorylate various inositol polyphosphate such as Ins(3,4,5,6)P4 or Ins(1,3,4)P3. This enzyme phosphorylates Ins(3,4,5,6)P4 at position 1 to form Ins(1,3,4,5,6)P5. This reaction is thought to have regulatory importance, since Ins(3,4,5,6)P4 is an inhibitor of plasma membrane Ca(2+)-activated Cl(-) channels, while Ins(1,3,4,5,6)P5 is not. It also phosphorylates Ins(1,3,4)P3 on O-5 and O-6 to form Ins(1,3,4,6)P4, an essential molecule in the hexakisphosphate (InsP6) pathway [, , , , ].; GO: 0000287 magnesium ion binding, 0005524 ATP binding, 0047325 inositol tetrakisphosphate 1-kinase activity, 0052725 inositol-1,3,4-trisphosphate 6-kinase activity, 0052726 inositol-1,3,4-trisphosphate 5-kinase activity, 0032957 inositol trisphosphate metabolic process, 0005622 intracellular; PDB: 1Z2P_X 1Z2O_X 1Z2N_X 2Q7D_A 2QB5_B 2ODT_X.
Probab=75.25 E-value=18 Score=39.42 Aligned_cols=69 Identities=16% Similarity=0.165 Sum_probs=38.3
Q ss_pred cccceeecChhHHHHHHHHhhhhhcCCCceEEEcCCCC---CCCCceEEeCChHHHHHhhccCCceeeeeccCcccc
Q psy14199 415 WLPTTYNLKTELLKFMSYYQNREKKNLNNLWIIKPFNL---ARSLDSYITDNINMVIKSALTGPKIIQKYIENPILF 488 (677)
Q Consensus 415 ~~P~Tf~L~~el~~f~~~~~~~~~~g~~n~WIlKP~n~---aRG~GI~I~~~l~~I~r~~~t~p~VVQkYIenPlLi 488 (677)
..|..-.+.++.....+. .+..|..---|+||-.. +....+.|+-+.+.+.+. +-|+|+|+||..=-.+
T Consensus 114 ~~P~~v~i~~~~~~~~~~---l~~agL~fPlI~KPlvA~Gsa~SH~Maivf~~~gL~~L--~~P~VlQeFVNHggvL 185 (307)
T PF05770_consen 114 RVPKFVVINSDAESLPEL---LKEAGLKFPLICKPLVACGSADSHKMAIVFNEEGLKDL--KPPCVLQEFVNHGGVL 185 (307)
T ss_dssp E-S-EEEESSSHCCHHHH---HHCTTS-SSEEEEESB-SSTSCCCEEEEE-SGGGGTT----SSEEEEE----TTEE
T ss_pred cCCceEEEcCCHHHHHHH---HHHCCCcccEEeeehhhcCCccceEEEEEECHHHHhhc--CCCEEEEEeecCCCEE
Confidence 467766666443223222 23457788899999853 345678899888877543 5699999999864444
No 61
>PF02786 CPSase_L_D2: Carbamoyl-phosphate synthase L chain, ATP binding domain; InterPro: IPR005479 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the ATP-binding domain found in the large subunit of carbamoyl phosphate synthase, as well as in related proteins.; GO: 0003824 catalytic activity, 0005524 ATP binding, 0008152 metabolic process; PDB: 3U9S_A 3U9T_A 2C00_B 2VQD_A 1W96_B 1W93_A 1M6V_C 1CS0_C 1C30_E 1C3O_G ....
Probab=73.74 E-value=3.8 Score=41.95 Aligned_cols=47 Identities=21% Similarity=0.184 Sum_probs=36.1
Q ss_pred CceEEEcCCCCCCCCceEEeCChHHHHHhhc-----------cCCceeeeeccCcccc
Q psy14199 442 NNLWIIKPFNLARSLDSYITDNINMVIKSAL-----------TGPKIIQKYIENPILF 488 (677)
Q Consensus 442 ~n~WIlKP~n~aRG~GI~I~~~l~~I~r~~~-----------t~p~VVQkYIenPlLi 488 (677)
+--.|+||..+..|+|++++.+.+++....+ +.+..+.+||++|-=+
T Consensus 38 GyPVliKas~ggGG~gm~iv~~~~eL~~~~~~~~~~s~~~fg~~~v~iek~i~~~rei 95 (211)
T PF02786_consen 38 GYPVLIKASAGGGGRGMRIVHNEEELEEAFERAQRESPAAFGDGPVLIEKFIEGAREI 95 (211)
T ss_dssp -SSEEEEETTSSTTTSEEEESSHHHHHHHHHHHHHHHHHHHSTS-EEEEE--SSEEEE
T ss_pred CCceEEeecccccccccccccchhhhhhhhhhccccCccccccceEEEeeehhhhhhh
Confidence 3468999999999999999999999876542 4688999999998644
No 62
>PRK13277 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase-like protein; Provisional
Probab=72.61 E-value=4 Score=45.39 Aligned_cols=43 Identities=12% Similarity=0.114 Sum_probs=34.4
Q ss_pred CceEEEcCCCCCC--CCceEEeCChHHHHHhhcc------------CCceeeeeccC
Q psy14199 442 NNLWIIKPFNLAR--SLDSYITDNINMVIKSALT------------GPKIIQKYIEN 484 (677)
Q Consensus 442 ~n~WIlKP~n~aR--G~GI~I~~~l~~I~r~~~t------------~p~VVQkYIen 484 (677)
+...|+||..+++ |+|+++.++.+++....+. ...++|+||.-
T Consensus 152 d~PVIVKp~~asG~~srG~f~a~s~eEl~~~a~~l~~~g~I~~~~~~~~iIQEyI~G 208 (366)
T PRK13277 152 DRPVIVKLPEAKRRLERGFFTASSYEDFYEKSEELIKAGVIDREDLKNARIEEYVIG 208 (366)
T ss_pred CccEEEEECCCCCccccCeEeeCCHHHHHHHHHhhhhcCcccccccccceeEeccCC
Confidence 4568999999999 9999999999988665432 23479999964
No 63
>TIGR02291 rimK_rel_E_lig alpha-L-glutamate ligase-related protein. Members of this protein family contain a region of homology to the RimK family of alpha-L-glutamate ligases (TIGR00768), various members of which modify the Glu-Glu C-terminus of ribosomal protein S6, or tetrahydromethanopterin, or a form of coenzyme F420 derivative. Members of this family are found so far in various Vibrio and Pseudomonas species and some other gamma and beta Proteobacteria. The function is unknown.
Probab=72.39 E-value=8.7 Score=42.00 Aligned_cols=43 Identities=14% Similarity=0.194 Sum_probs=28.6
Q ss_pred ccceeecCh---hHHHHHHHHhhhhhcCCCceEEEcCCCCCCCCceEEeCCh
Q psy14199 416 LPTTYNLKT---ELLKFMSYYQNREKKNLNNLWIIKPFNLARSLDSYITDNI 464 (677)
Q Consensus 416 ~P~Tf~L~~---el~~f~~~~~~~~~~g~~n~WIlKP~n~aRG~GI~I~~~l 464 (677)
+|+|+.+.. ..+.+.+... ..+.-|+||..+++|+||.++.+.
T Consensus 52 vP~T~~~~s~~~~~~~l~~~~~------~~~~VVVKPl~Gs~GrGI~~i~~~ 97 (317)
T TIGR02291 52 VPELYGVIHNQAEVKTIHNIVK------DHPDFVIKPAQGSGGKGILVITSR 97 (317)
T ss_pred CCCEEEecCchhhHHHHHHHHc------cCCCEEEEECCCCCccCeEEEEec
Confidence 488886542 2333333321 123589999999999999998764
No 64
>PRK13790 phosphoribosylamine--glycine ligase; Provisional
Probab=70.80 E-value=4.9 Score=44.46 Aligned_cols=44 Identities=18% Similarity=0.242 Sum_probs=35.6
Q ss_pred CceEEEcCCCCCCCCceEEeCChHHHHHhhc-------cCCceeeeeccCc
Q psy14199 442 NNLWIIKPFNLARSLDSYITDNINMVIKSAL-------TGPKIIQKYIENP 485 (677)
Q Consensus 442 ~n~WIlKP~n~aRG~GI~I~~~l~~I~r~~~-------t~p~VVQkYIenP 485 (677)
+--.|+||..++.|+|+.++++.+++.+..+ .++.|+|+||+-+
T Consensus 102 g~PvVvKp~~~~~gkGV~iv~~~~el~~a~~~~~~~~~~~~vlvEe~i~G~ 152 (379)
T PRK13790 102 ELPVVVKKDGLAAGKGVIIADTIEAARSAIEIMYGDEEEGTVVFETFLEGE 152 (379)
T ss_pred CCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHhcCCCCeEEEEEcccCc
Confidence 4578999999999999999999988765332 2468999999754
No 65
>PF15632 ATPgrasp_Ter: ATP-grasp in the biosynthetic pathway with Ter operon
Probab=69.95 E-value=13 Score=40.78 Aligned_cols=86 Identities=12% Similarity=0.080 Sum_probs=57.2
Q ss_pred cccccchHHHHHHHHhHhhhhccCCCCCCCcccceeecChhHHHHHHHHhhhhhcCCCceEEEcCCCCCCCCceEEeC-C
Q psy14199 385 YILTIKDLLSIVCRRNSKDIEKTTLQTSPDWLPTTYNLKTELLKFMSYYQNREKKNLNNLWIIKPFNLARSLDSYITD-N 463 (677)
Q Consensus 385 ~~LtrKd~L~~~l~~~~~~~~~~~~~~~~~~~P~Tf~L~~el~~f~~~~~~~~~~g~~n~WIlKP~n~aRG~GI~I~~-~ 463 (677)
..+-.|..++..+++. +. -+|+++. -+..++|.+.+.+. ...+..-++||..+.-|+|-++++ +
T Consensus 103 ~~~~dK~~~y~~~~~~-------~i-----pvp~~~~-v~t~~el~~a~~~l--~~~~~~~CvKP~~g~gg~GFr~l~~~ 167 (329)
T PF15632_consen 103 ELADDKAAFYEFMEAN-------GI-----PVPPYWR-VRTADELKAAYEEL--RFPGQPLCVKPAVGIGGRGFRVLDES 167 (329)
T ss_pred HHHhhHHHHHHHHHhC-------CC-----CCCCEEE-eCCHHHHHHHHHhc--CCCCceEEEecccCCCcceEEEEccC
Confidence 4566777777766652 11 3556665 44566666665543 234677999999999999999999 5
Q ss_pred hHHHHHhhc--------------------cCCceeeeeccCc
Q psy14199 464 INMVIKSAL--------------------TGPKIIQKYIENP 485 (677)
Q Consensus 464 l~~I~r~~~--------------------t~p~VVQkYIenP 485 (677)
.+.+..... -.|.||+.|+.-|
T Consensus 168 ~~~l~~l~~~~~~~i~~~~~~~~l~~~~~~~~llvMeyL~G~ 209 (329)
T PF15632_consen 168 RDELDALFEPDSRRISLDELLAALQRSEEFPPLLVMEYLPGP 209 (329)
T ss_pred cchHHHhcCCCcceeCHHHHHHHHhccCCCCCcEEecCCCCC
Confidence 554433322 2468999999876
No 66
>TIGR02068 cya_phycin_syn cyanophycin synthetase. Cyanophycin synthesis is analogous to polyhydroxyalkanoic acid (PHA) biosynthesis, except that PHA polymers lack nitrogen and may be made under nitrogen-limiting conditions.
Probab=69.29 E-value=13 Score=45.85 Aligned_cols=42 Identities=14% Similarity=0.192 Sum_probs=33.8
Q ss_pred CceEEEcCCCCCCCCceEE-eCChHHHHHhhc-----cCCceeeeecc
Q psy14199 442 NNLWIIKPFNLARSLDSYI-TDNINMVIKSAL-----TGPKIIQKYIE 483 (677)
Q Consensus 442 ~n~WIlKP~n~aRG~GI~I-~~~l~~I~r~~~-----t~p~VVQkYIe 483 (677)
+.-.++||..++.|+|+.+ .++.+++.+..+ ..+.+||+||.
T Consensus 248 g~PvVVKP~~g~~G~GV~l~v~s~~el~~a~~~a~~~~~~vlVEefI~ 295 (864)
T TIGR02068 248 GYPVVIKPYDGNHGRGVTINILTRDEIESAYEAAVEESSGVIVERFIT 295 (864)
T ss_pred CCCEEEEECCCCCccCEEEEeCCHHHHHHHHHHHHhhCCcEEEEEecc
Confidence 3467999999999999998 888888765432 35789999995
No 67
>PRK02471 bifunctional glutamate--cysteine ligase/glutathione synthetase; Provisional
Probab=68.50 E-value=7.4 Score=47.20 Aligned_cols=41 Identities=15% Similarity=0.196 Sum_probs=31.1
Q ss_pred ceEEEcCCCCCCCCceEEeC---ChHHHHHhhc-----cCCceeeeecc
Q psy14199 443 NLWIIKPFNLARSLDSYITD---NINMVIKSAL-----TGPKIIQKYIE 483 (677)
Q Consensus 443 n~WIlKP~n~aRG~GI~I~~---~l~~I~r~~~-----t~p~VVQkYIe 483 (677)
---|+||..++.|+||.++. +.+++.+..+ ....+||+||.
T Consensus 525 ~PvVVKP~~g~~G~GV~~~~~~~~~eel~~A~~~a~~~~~~vlVEEfI~ 573 (752)
T PRK02471 525 KAIVVKPKSTNFGLGISIFKEPASLEDYEKALEIAFREDSSVLVEEFIV 573 (752)
T ss_pred CCEEEEECCCCCcCCeEEecCcCCHHHHHHHHHHHHhcCCcEEEEeccc
Confidence 45799999999999999875 4566554432 34689999995
No 68
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=66.36 E-value=12 Score=41.27 Aligned_cols=42 Identities=7% Similarity=0.075 Sum_probs=34.9
Q ss_pred CceEEEcCCCC-CCCCceEEeCChHHHHHhhc---cCCceeeeecc
Q psy14199 442 NNLWIIKPFNL-ARSLDSYITDNINMVIKSAL---TGPKIIQKYIE 483 (677)
Q Consensus 442 ~n~WIlKP~n~-aRG~GI~I~~~l~~I~r~~~---t~p~VVQkYIe 483 (677)
+--+|+||..+ .-|+|+.+.++.+++.+..+ ..++|+|+||.
T Consensus 135 g~P~vlKp~~~g~~g~Gv~~v~~~~el~~a~~~~~~~~~ivEe~I~ 180 (372)
T PRK06019 135 GLPAVLKTRRGGYDGKGQWVIRSAEDLEAAWALLGSVPCILEEFVP 180 (372)
T ss_pred CCcEEEEeCCCCcCCCCeEEECCHHHHHHHHHhcCCCCEEEEecCC
Confidence 45799999985 58999999999998866543 35789999997
No 69
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=66.05 E-value=6.2 Score=49.58 Aligned_cols=44 Identities=14% Similarity=0.182 Sum_probs=37.1
Q ss_pred CceEEEcCCCCCCCCceEEeCChHHHHHhhc-------cCCceeeeeccCc
Q psy14199 442 NNLWIIKPFNLARSLDSYITDNINMVIKSAL-------TGPKIIQKYIENP 485 (677)
Q Consensus 442 ~n~WIlKP~n~aRG~GI~I~~~l~~I~r~~~-------t~p~VVQkYIenP 485 (677)
+--+|+||..++.|+|+.++++.+++....+ ..+.++|+||+.+
T Consensus 704 gyPvvVKP~~~~Gg~Gv~iv~~~eeL~~~~~~a~~~s~~~~vlIEefI~G~ 754 (1066)
T PRK05294 704 GYPVLVRPSYVLGGRAMEIVYDEEELERYMREAVKVSPDHPVLIDKFLEGA 754 (1066)
T ss_pred CCCeEEEeCCCCCCCcEEEECCHHHHHHHHHHHHhhCCCCcEEEEecCCCC
Confidence 4569999999999999999999988765432 3579999999987
No 70
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=63.47 E-value=12 Score=47.26 Aligned_cols=44 Identities=11% Similarity=0.123 Sum_probs=36.6
Q ss_pred CceEEEcCCCCCCCCceEEeCChHHHHHhhc-----cCCceeeeeccCc
Q psy14199 442 NNLWIIKPFNLARSLDSYITDNINMVIKSAL-----TGPKIIQKYIENP 485 (677)
Q Consensus 442 ~n~WIlKP~n~aRG~GI~I~~~l~~I~r~~~-----t~p~VVQkYIenP 485 (677)
+--+|+||..+..|+|+.++++.+++.+..+ ..|.++|+||+-+
T Consensus 705 gyPvVVKP~~~~Gg~gv~iv~~~eeL~~~l~~~~s~~~~vlIeefI~G~ 753 (1068)
T PRK12815 705 GYPVLIRPSYVIGGQGMAVVYDEPALEAYLAENASQLYPILIDQFIDGK 753 (1068)
T ss_pred CCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHhhcCCCCEEEEEeecCc
Confidence 4579999999999999999999988766432 4689999999743
No 71
>PRK06395 phosphoribosylamine--glycine ligase; Provisional
Probab=61.96 E-value=16 Score=41.35 Aligned_cols=43 Identities=19% Similarity=0.272 Sum_probs=31.3
Q ss_pred ceEEEcCCCCCCCCceEEeC----ChHHHHHh-----hccCCceeeeeccCc
Q psy14199 443 NLWIIKPFNLARSLDSYITD----NINMVIKS-----ALTGPKIIQKYIENP 485 (677)
Q Consensus 443 n~WIlKP~n~aRG~GI~I~~----~l~~I~r~-----~~t~p~VVQkYIenP 485 (677)
--.|+||..++-|+|+++++ ++++.... ...++.|||+||+-|
T Consensus 142 ~PvVVKP~~~sggkGV~v~~~~~~~~~ea~~~~~~~~~~~~~viIEEfl~G~ 193 (435)
T PRK06395 142 KDVAVKPIGLTGGKGVKVTGEQLNSVDEAIRYAIEILDRDGVVLIEKKMTGE 193 (435)
T ss_pred CCEEEEeCCCCCCCCeEEecCchhhHHHHHHHHHHHhCCCCcEEEEeecCCc
Confidence 35899999999999999994 33443321 123568999999865
No 72
>PRK14570 D-alanyl-alanine synthetase A; Provisional
Probab=61.82 E-value=9 Score=42.37 Aligned_cols=42 Identities=29% Similarity=0.298 Sum_probs=34.5
Q ss_pred CceEEEcCCCCCCCCceEEeCChHHHHHhhc-----cCCceeeeecc
Q psy14199 442 NNLWIIKPFNLARSLDSYITDNINMVIKSAL-----TGPKIIQKYIE 483 (677)
Q Consensus 442 ~n~WIlKP~n~aRG~GI~I~~~l~~I~r~~~-----t~p~VVQkYIe 483 (677)
+--.|+||.++.-|.||.++++.+++.+..+ ..+.+||+||+
T Consensus 171 g~PviVKP~~~GsS~Gv~~v~~~~el~~al~~a~~~~~~vlVEefI~ 217 (364)
T PRK14570 171 GYPVIVKPAVLGSSIGINVAYNENQIEKCIEEAFKYDLTVVIEKFIE 217 (364)
T ss_pred CCCEEEEeCCCCCCCcEEEeCCHHHHHHHHHHHHhCCCCEEEECCcC
Confidence 4579999999888999999999998876433 24679999997
No 73
>KOG2156|consensus
Probab=58.87 E-value=5.8 Score=45.85 Aligned_cols=27 Identities=48% Similarity=0.956 Sum_probs=23.3
Q ss_pred ccceeEEEEEeeccchhhhhhcccccc
Q psy14199 498 KFDVRYVVLVKSVKPLKVYLYKNFFLR 524 (677)
Q Consensus 498 kfd~r~~vl~~~~~~~~~~~~~~~~~~ 524 (677)
|||+|+||.++++.|++++.|.+-..|
T Consensus 352 KFDlrlYv~vts~nPLRIy~y~dgL~R 378 (662)
T KOG2156|consen 352 KFDLRLYVVVTSVNPLRIYIYNDGLVR 378 (662)
T ss_pred ceeEEEEEEEeecCceEEEEeccceee
Confidence 799999999999999999999744433
No 74
>TIGR02712 urea_carbox urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.
Probab=54.92 E-value=24 Score=45.25 Aligned_cols=44 Identities=9% Similarity=0.117 Sum_probs=35.8
Q ss_pred CceEEEcCCCCCCCCceEEeCChHHHHHhhc-----------cCCceeeeeccCc
Q psy14199 442 NNLWIIKPFNLARSLDSYITDNINMVIKSAL-----------TGPKIIQKYIENP 485 (677)
Q Consensus 442 ~n~WIlKP~n~aRG~GI~I~~~l~~I~r~~~-----------t~p~VVQkYIenP 485 (677)
+--+|+||..++.|+|++++++.+++....+ ..+.++|+||+.+
T Consensus 150 gyPvVVKP~~ggGG~GV~iv~~~eEL~~a~~~~~~~~~~~f~~~~vlVEefI~g~ 204 (1201)
T TIGR02712 150 GYPVMLKSTAGGGGIGMQKCDSAAELAEAFETVKRLGESFFGDAGVFLERFVENA 204 (1201)
T ss_pred CCeEEEEECCCCCCCCEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEEecCCCC
Confidence 4579999999999999999999998864321 2458999999854
No 75
>PHA02117 glutathionylspermidine synthase domain-containing protein
Probab=54.54 E-value=27 Score=39.40 Aligned_cols=42 Identities=17% Similarity=0.180 Sum_probs=31.5
Q ss_pred eEEEcCCCCCCCCceEEeCChHHHHHhh---ccCCceeeeeccCc
Q psy14199 444 LWIIKPFNLARSLDSYITDNINMVIKSA---LTGPKIIQKYIENP 485 (677)
Q Consensus 444 ~WIlKP~n~aRG~GI~I~~~l~~I~r~~---~t~p~VVQkYIenP 485 (677)
.|+.||..+-.|.+|.|+.+-..+.+.. ...++|.|+|++=|
T Consensus 309 ~yV~KPi~gREG~nV~i~~~g~~~~~~~g~y~~~~~IyQ~~~~Lp 353 (397)
T PHA02117 309 KYVSKPLLSREGNNIHIFEYGGESEDTDGNYAEEPRVVQQLIEWG 353 (397)
T ss_pred CEEeccCCCcCCCCEEEEECCeEEeccCCCCCCCCeEEEEccCCc
Confidence 5999999999999999997644332211 13578999999755
No 76
>PF01071 GARS_A: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; InterPro: IPR020561 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ....
Probab=54.24 E-value=38 Score=34.60 Aligned_cols=60 Identities=17% Similarity=0.236 Sum_probs=38.4
Q ss_pred ceeecChhHHHHHHHHhhhhhcCCCceEEEcCCCCCCCCceEEeCChHHHHHhhc-----------cCCceeeeeccC
Q psy14199 418 TTYNLKTELLKFMSYYQNREKKNLNNLWIIKPFNLARSLDSYITDNINMVIKSAL-----------TGPKIIQKYIEN 484 (677)
Q Consensus 418 ~Tf~L~~el~~f~~~~~~~~~~g~~n~WIlKP~n~aRG~GI~I~~~l~~I~r~~~-----------t~p~VVQkYIen 484 (677)
.+|.=..+..+|++.+. .....+||..++.|+|+.|+++.++..+... ..+.|+++|++=
T Consensus 21 ~~f~~~~~A~~~l~~~~-------~p~~ViKadGla~GKGV~i~~~~~eA~~~l~~~~~~~~fg~~~~~vvIEE~l~G 91 (194)
T PF01071_consen 21 KVFTDYEEALEYLEEQG-------YPYVVIKADGLAAGKGVVIADDREEALEALREIFVDRKFGDAGSKVVIEEFLEG 91 (194)
T ss_dssp EEESSHHHHHHHHHHHS-------SSEEEEEESSSCTTTSEEEESSHHHHHHHHHHHHTSSTTCCCGSSEEEEE---S
T ss_pred eEECCHHHHHHHHHhcC-------CCceEEccCCCCCCCEEEEeCCHHHHHHHHHHhccccccCCCCCcEEEEeccCC
Confidence 44444455555555432 2236999999999999999999877655332 245788888864
No 77
>PLN02257 phosphoribosylamine--glycine ligase
Probab=54.11 E-value=13 Score=42.13 Aligned_cols=43 Identities=7% Similarity=0.162 Sum_probs=34.2
Q ss_pred ceEEEcCCCCCCCCceEEeCChHHHHHhhc-----------cCCceeeeeccCc
Q psy14199 443 NLWIIKPFNLARSLDSYITDNINMVIKSAL-----------TGPKIIQKYIENP 485 (677)
Q Consensus 443 n~WIlKP~n~aRG~GI~I~~~l~~I~r~~~-----------t~p~VVQkYIenP 485 (677)
--.|+||..++-|+|+.+.++.+++.+... ..+.|+++||+-+
T Consensus 138 ~PvVVKp~~~~~GkGV~iv~~~~el~~a~~~~~~~~~fg~~~~~vlIEefi~G~ 191 (434)
T PLN02257 138 APIVVKADGLAAGKGVVVAMTLEEAYEAVDSMLVKGAFGSAGSEVVVEEFLDGE 191 (434)
T ss_pred CCEEEEcCCCCCCCCEEEECCHHHHHHHHHHHHhhhhccCCCCeEEEEECCCCC
Confidence 467999999999999999999988755321 2457999999754
No 78
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=54.08 E-value=26 Score=39.60 Aligned_cols=44 Identities=16% Similarity=0.187 Sum_probs=34.8
Q ss_pred CceEEEcCCCCCCCCceEEeCChHHHHHhhcc-----------CCceeeeeccCc
Q psy14199 442 NNLWIIKPFNLARSLDSYITDNINMVIKSALT-----------GPKIIQKYIENP 485 (677)
Q Consensus 442 ~n~WIlKP~n~aRG~GI~I~~~l~~I~r~~~t-----------~p~VVQkYIenP 485 (677)
+--.|+||..++.|+|+.++++.+++.+..+. ...|+++||+-+
T Consensus 143 ~~PvVVKp~~~~~gkGV~vv~~~eel~~a~~~~~~~~~~g~~~~~vlIEEfl~G~ 197 (426)
T PRK13789 143 MLPIVIKADGLAAGKGVTVATEKKMAKRALKEIFKDKKFGQSGNQVVIEEFMEGQ 197 (426)
T ss_pred CCCEEEEeCCCCCCCcEEEECCHHHHHHHHHHHHhhccccCCCCeEEEEECcCCe
Confidence 34789999999999999999999887653221 257999999753
No 79
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]
Probab=49.65 E-value=12 Score=43.90 Aligned_cols=69 Identities=10% Similarity=0.106 Sum_probs=49.6
Q ss_pred CCcccceeecChhHHHHHHHHhhhhhcCCCceEEEcCCCCCCCCceEEeCChHHHHHhhc-----------cCCceeeee
Q psy14199 413 PDWLPTTYNLKTELLKFMSYYQNREKKNLNNLWIIKPFNLARSLDSYITDNINMVIKSAL-----------TGPKIIQKY 481 (677)
Q Consensus 413 ~~~~P~Tf~L~~el~~f~~~~~~~~~~g~~n~WIlKP~n~aRG~GI~I~~~l~~I~r~~~-----------t~p~VVQkY 481 (677)
...+|-+--.-.+..++++.-.+ -+---++|...+..|+|+++..+.+++....+ .+...+.||
T Consensus 128 Vp~VPG~~g~~qd~~~~~~~A~e-----iGyPVlIKAsaGGGGKGMRvv~~~~e~~e~l~sarrEA~asFGddrv~iEky 202 (645)
T COG4770 128 VPTVPGYHGPIQDAAELVAIAEE-----IGYPVLIKASAGGGGKGMRVVETPEEFAEALESARREAKASFGDDRVFIEKY 202 (645)
T ss_pred CCccCCCCCcccCHHHHHHHHHh-----cCCcEEEEeccCCCCCceEeecCHHHHHHHHHHHHHHHHhhcCCceEehhhh
Confidence 34556555555666666655332 24566899999999999999999999876543 246788899
Q ss_pred ccCcc
Q psy14199 482 IENPI 486 (677)
Q Consensus 482 IenPl 486 (677)
+++|=
T Consensus 203 l~~PR 207 (645)
T COG4770 203 LDKPR 207 (645)
T ss_pred cCCCc
Confidence 98885
No 80
>KOG2158|consensus
Probab=49.31 E-value=7.6 Score=44.36 Aligned_cols=22 Identities=45% Similarity=0.771 Sum_probs=21.0
Q ss_pred ccceeEEEEEeeccchhhhhhc
Q psy14199 498 KFDVRYVVLVKSVKPLKVYLYK 519 (677)
Q Consensus 498 kfd~r~~vl~~~~~~~~~~~~~ 519 (677)
|||+|.|+|.+||-|+.||+++
T Consensus 274 Kfd~rvy~likSvdPlsIfva~ 295 (565)
T KOG2158|consen 274 KFDQRVYSLIKSVDPLSIFVAS 295 (565)
T ss_pred eeeeeeeeeeeccCcceEEEec
Confidence 7999999999999999999986
No 81
>COG1821 Predicted ATP-utilizing enzyme (ATP-grasp superfamily) [General function prediction only]
Probab=49.06 E-value=7.8 Score=41.35 Aligned_cols=37 Identities=19% Similarity=0.279 Sum_probs=31.7
Q ss_pred CCceEEEcCCCCCCCCceEEeCChHHHHHhhccCCceeeeeccCc
Q psy14199 441 LNNLWIIKPFNLARSLDSYITDNINMVIKSALTGPKIIQKYIENP 485 (677)
Q Consensus 441 ~~n~WIlKP~n~aRG~GI~I~~~l~~I~r~~~t~p~VVQkYIenP 485 (677)
.+..+|+||..+|.|.||.+..+..++ .|+|.||+--
T Consensus 137 ~~~k~ViKp~dgCgge~i~~~~~~pd~--------~i~qEfIeG~ 173 (307)
T COG1821 137 EPKKYVIKPADGCGGEGILFGRDFPDI--------EIAQEFIEGE 173 (307)
T ss_pred CCceEEecccccCCcceeeccCCCcch--------hhHHHhcCCc
Confidence 467999999999999999998886664 7899999853
No 82
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=47.14 E-value=37 Score=39.19 Aligned_cols=43 Identities=9% Similarity=0.094 Sum_probs=31.9
Q ss_pred eEEEcCCCCCCCCceEEeCChHHH--------H----Hhh--------c-cCCceeeeeccCcc
Q psy14199 444 LWIIKPFNLARSLDSYITDNINMV--------I----KSA--------L-TGPKIIQKYIENPI 486 (677)
Q Consensus 444 ~WIlKP~n~aRG~GI~I~~~l~~I--------~----r~~--------~-t~p~VVQkYIenPl 486 (677)
-.|+||..++.|+|+.++++.+++ . +.. + ..+.|||+||+-|=
T Consensus 146 PvVVKP~~~aggkGV~iv~~~~e~~~~~~~ea~~~a~~~~~~~~~~~g~~~~~VlIEEfL~G~E 209 (486)
T PRK05784 146 SVAIKPARQAGGKGVKVIADLQAYLSQEKREALTKSVNDIKEGSAYYKDVEPKILVEEKVDGVE 209 (486)
T ss_pred CEEEeeCCCCCCCCEEEECChhHhcchhHHHHHHHHHHHHHHhHhhccCCCCeEEEEEccCCeE
Confidence 699999999999999999986521 1 110 1 24689999998653
No 83
>KOG1083|consensus
Probab=46.18 E-value=16 Score=45.51 Aligned_cols=41 Identities=29% Similarity=0.325 Sum_probs=35.3
Q ss_pred cccCCCCCeeeeeeEecCCCcEEEEEeeeeecceeeeeeecccCCeEEEeecc
Q psy14199 166 IQHSDEPNMRIVPFIYLNEGIAYSILYPIIIKILIFVKFCYILGSLILTIDYV 218 (677)
Q Consensus 166 i~hsd~pn~~~~pf~~~~~~~~ys~l~p~~~~~~~~~~~~~~~g~~~~trd~~ 218 (677)
|.||-.|||+|+++ .-+|..=-+|++++| |. .|+ |||-||=
T Consensus 1254 inhscKPNc~~qkw--SVNG~~Rv~L~A~rD-------i~--kGE-ELtYDYN 1294 (1306)
T KOG1083|consen 1254 INHSCKPNCEMQKW--SVNGEYRVGLFALRD-------LP--KGE-ELTYDYN 1294 (1306)
T ss_pred cccccCCCCccccc--cccceeeeeeeecCC-------CC--CCc-eEEEecc
Confidence 56999999999986 446666778899999 99 999 9999976
No 84
>PRK10507 bifunctional glutathionylspermidine amidase/glutathionylspermidine synthetase; Provisional
Probab=44.75 E-value=49 Score=39.50 Aligned_cols=43 Identities=14% Similarity=0.110 Sum_probs=31.0
Q ss_pred ceEEEcCCCCCCCCceEEeCChHHHHHh----hccCCceeeeeccCc
Q psy14199 443 NLWIIKPFNLARSLDSYITDNINMVIKS----ALTGPKIIQKYIENP 485 (677)
Q Consensus 443 n~WIlKP~n~aRG~GI~I~~~l~~I~r~----~~t~p~VVQkYIenP 485 (677)
..|+.||..+-+|.+|.|++.-..++.. ....++|.|+|..=|
T Consensus 528 ~~yV~KPi~GREG~nV~i~~~~g~~~~~~~g~y~~~~~IyQ~~~~LP 574 (619)
T PRK10507 528 TGYAVKPIAGRCGSNIDLVSHQEEVLDKTSGKFAEQKNIYQQLWCLP 574 (619)
T ss_pred CCeEeccCCCcCCCCEEEEeCCCcEeeccCCCCCCCCeEEEEeccCc
Confidence 3599999999999999999762222211 113568999999755
No 85
>PRK06524 biotin carboxylase-like protein; Validated
Probab=44.47 E-value=23 Score=41.02 Aligned_cols=44 Identities=14% Similarity=-0.011 Sum_probs=35.4
Q ss_pred CCceEEEcCCCCCCCCceEEeCChHHHHHhhcc----CCceeeeeccC
Q psy14199 441 LNNLWIIKPFNLARSLDSYITDNINMVIKSALT----GPKIIQKYIEN 484 (677)
Q Consensus 441 ~~n~WIlKP~n~aRG~GI~I~~~l~~I~r~~~t----~p~VVQkYIen 484 (677)
.+---++||..++-|.|+.++++.+++...... ...++|+||..
T Consensus 180 IGyPvVVKP~~GGSS~GV~~Vkn~eELe~a~~~~~~~~~viVEe~I~G 227 (493)
T PRK06524 180 LGDDLVVQTPYGDSGSTTFFVRGQRDWDKYAGGIVGQPEIKVMKRIRN 227 (493)
T ss_pred CCCcEEEEECCCCCCcCEEEeCCHHHHHHHHHHhcCCCCEEEEeccCc
Confidence 345679999999999999999999998765543 34689999964
No 86
>KOG0369|consensus
Probab=44.22 E-value=24 Score=42.28 Aligned_cols=57 Identities=21% Similarity=0.228 Sum_probs=45.8
Q ss_pred hhHHHHHHHHhhhhhcCCCceEEEcCCCCCCCCceEEeCChHHHHHhhc-----------cCCceeeeeccCcccc
Q psy14199 424 TELLKFMSYYQNREKKNLNNLWIIKPFNLARSLDSYITDNINMVIKSAL-----------TGPKIIQKYIENPILF 488 (677)
Q Consensus 424 ~el~~f~~~~~~~~~~g~~n~WIlKP~n~aRG~GI~I~~~l~~I~r~~~-----------t~p~VVQkYIenPlLi 488 (677)
.|..+|+..| +---|+|...+..|+|++++++.+++..... .+...|.|+|++|=-|
T Consensus 174 ~EA~eF~k~y--------G~PvI~KAAyGGGGRGmRvVr~~e~vee~f~Ra~SEA~aaFGnG~~FvEkF~ekPrHI 241 (1176)
T KOG0369|consen 174 EEALEFVKEY--------GLPVIIKAAYGGGGRGMRVVRSGEDVEEAFQRAYSEALAAFGNGTLFVEKFLEKPRHI 241 (1176)
T ss_pred HHHHHHHHhc--------CCcEEEeecccCCCcceEEeechhhHHHHHHHHHHHHHHhcCCceeeHHhhhcCccee
Confidence 5777787765 3467999999999999999999988765432 4678999999999754
No 87
>KOG0238|consensus
Probab=42.93 E-value=15 Score=42.65 Aligned_cols=45 Identities=16% Similarity=0.090 Sum_probs=36.3
Q ss_pred CceEEEcCCCCCCCCceEEeCChHHHHHhhc-----------cCCceeeeeccCcc
Q psy14199 442 NNLWIIKPFNLARSLDSYITDNINMVIKSAL-----------TGPKIIQKYIENPI 486 (677)
Q Consensus 442 ~n~WIlKP~n~aRG~GI~I~~~l~~I~r~~~-----------t~p~VVQkYIenPl 486 (677)
+---++|+..+..|+|++|..+.+++....+ ....++.|||+||=
T Consensus 148 gyPvMiKa~~GGGGkGMria~~~~ef~~~~~~ak~Ea~~sFGdd~~llEkfi~npR 203 (670)
T KOG0238|consen 148 GYPVMIKATAGGGGKGMRIAWSEEEFEEGLESAKQEAAKSFGDDGMLLEKFIDNPR 203 (670)
T ss_pred CCcEEEEeccCCCCcceEeecChHHHHHHHHHHHHHHHhhcCcchhhHHHhccCCc
Confidence 4456899999999999999999988766543 13578899999985
No 88
>KOG1082|consensus
Probab=42.39 E-value=19 Score=39.80 Aligned_cols=52 Identities=21% Similarity=0.218 Sum_probs=44.3
Q ss_pred cccccccccCCCCCeeeeeeEecCCC--cEEEEEeeeeecceeeeeeecccCCeEEEeecccCC
Q psy14199 160 DEFGSAIQHSDEPNMRIVPFIYLNEG--IAYSILYPIIIKILIFVKFCYILGSLILTIDYVESY 221 (677)
Q Consensus 160 De~Gs~i~hsd~pn~~~~pf~~~~~~--~~ys~l~p~~~~~~~~~~~~~~~g~~~~trd~~~~~ 221 (677)
-++|--|+||=.||+-+.+.+.-... ...-.+|++++ |. .|+ |+|-||....
T Consensus 270 GNv~RfinHSC~PN~~~~~v~~~~~~~~~~~i~ffa~~~-------I~--p~~-ELT~dYg~~~ 323 (364)
T KOG1082|consen 270 GNVARFINHSCSPNLLYQAVFQDEFVLLYLRIGFFALRD-------IS--PGE-ELTLDYGKAY 323 (364)
T ss_pred ccccccccCCCCccceeeeeeecCCccchheeeeeeccc-------cC--CCc-ccchhhcccc
Confidence 47899999999999999998888443 66678999999 88 999 9999998543
No 89
>PLN02735 carbamoyl-phosphate synthase
Probab=42.05 E-value=26 Score=44.51 Aligned_cols=44 Identities=11% Similarity=0.160 Sum_probs=36.0
Q ss_pred CceEEEcCCCCCCCCceEEeCChHHHHHhhc-------cCCceeeeeccCc
Q psy14199 442 NNLWIIKPFNLARSLDSYITDNINMVIKSAL-------TGPKIIQKYIENP 485 (677)
Q Consensus 442 ~n~WIlKP~n~aRG~GI~I~~~l~~I~r~~~-------t~p~VVQkYIenP 485 (677)
+---|+||..+..|+|+.+.++.+++....+ .++.++|+||+..
T Consensus 737 GyPvvVKP~~g~gG~G~~iV~~~eeL~~al~~a~~~~~~~~vlVEefI~~g 787 (1102)
T PLN02735 737 GYPVVVRPSYVLGGRAMEIVYSDDKLKTYLETAVEVDPERPVLVDKYLSDA 787 (1102)
T ss_pred CCCeEEEeCCCCCCCcEEEECCHHHHHHHHHHHHHhcCCCCEEEEEecCCc
Confidence 4468999999999999999999998865432 2478999999754
No 90
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=40.33 E-value=29 Score=43.79 Aligned_cols=43 Identities=14% Similarity=-0.031 Sum_probs=35.4
Q ss_pred ceEEEcCCCCCCCCceEEeCChHHHHHhhc-------cCCceeeeeccCc
Q psy14199 443 NLWIIKPFNLARSLDSYITDNINMVIKSAL-------TGPKIIQKYIENP 485 (677)
Q Consensus 443 n~WIlKP~n~aRG~GI~I~~~l~~I~r~~~-------t~p~VVQkYIenP 485 (677)
---|+||..+..|+|+.++++.+++..... .++.++|+||.-.
T Consensus 164 ~PvVVKP~~g~gg~Gv~iv~~~eeL~~a~~~~~~~s~~~~vlvEe~I~G~ 213 (1066)
T PRK05294 164 YPVIIRPSFTLGGTGGGIAYNEEELEEIVERGLDLSPVTEVLIEESLLGW 213 (1066)
T ss_pred CCeEEEcCCCCCCCCeEEECCHHHHHHHHHHHHhhCCCCeEEEEEcccCc
Confidence 467999999999999999999998865432 2578999999753
No 91
>COG2940 Proteins containing SET domain [General function prediction only]
Probab=39.65 E-value=15 Score=42.03 Aligned_cols=52 Identities=33% Similarity=0.366 Sum_probs=41.8
Q ss_pred cccccccccCCCCCeeeeeeEecCCCcEEEEEeeeeecceeeeeeecccCCeEEEeecccCCCC
Q psy14199 160 DEFGSAIQHSDEPNMRIVPFIYLNEGIAYSILYPIIIKILIFVKFCYILGSLILTIDYVESYQD 223 (677)
Q Consensus 160 De~Gs~i~hsd~pn~~~~pf~~~~~~~~ys~l~p~~~~~~~~~~~~~~~g~~~~trd~~~~~~~ 223 (677)
..+|..|+||.+||+...+-.-. |+..++..-++| |. .|+ |+|-||-....+
T Consensus 403 g~~~r~~nHS~~pN~~~~~~~~~--g~~~~~~~~~rD-------I~--~ge-El~~dy~~~~~~ 454 (480)
T COG2940 403 GDVARFINHSCTPNCEASPIEVN--GIFKISIYAIRD-------IK--AGE-ELTYDYGPSLED 454 (480)
T ss_pred ccccceeecCCCCCcceeccccc--ccceeeeccccc-------ch--hhh-hhcccccccccc
Confidence 37899999999999988754333 477888899999 88 999 999999854433
No 92
>PF09241 Herp-Cyclin: Herpesviridae viral cyclin; InterPro: IPR015322 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs). Cyclins, together with the p34 (cdc2) or cdk2 kinases, form the Maturation Promoting Factor (MPF). There are two main groups of cyclins, G1/S cyclins, which are essential for the control of the cell cycle at the G1/S (start) transition, and G2/M cyclins, which are essential for the control of the cell cycle at the G2/M (mitosis) transition. G2/M cyclins accumulate steadily during G2 and are abruptly destroyed as cells exit from mitosis (at the end of the M-phase). In most species, there are multiple forms of G1 and G2 cyclins. For example, in vertebrates, there are two G2 cyclins, A and B, and at least three G1 cyclins, C, D, and E. Cyclin homologues have been found in various viruses, including Saimiriine herpesvirus 2 (Herpesvirus saimiri) and Human herpesvirus 8 (HHV-8) (Kaposi's sarcoma-associated herpesvirus). These viral homologues differ from their cellular counterparts in that the viral proteins have gained new functions and eliminated others to harness the cell and benefit the virus []. This entry represents a domain found in a family of viral cyclins that specifically activate CDK6 of host cells to a very high degree []. This domain adopts a helical structure consisting of five alpha-helices, with one helix surrounded by the others.; PDB: 1XO2_A 1JOW_A 2F2C_A 2EUF_A 1BU2_A.
Probab=39.04 E-value=24 Score=31.57 Aligned_cols=22 Identities=23% Similarity=0.341 Sum_probs=15.4
Q ss_pred HHHHHhCCCChHHHHHHHHhhh
Q psy14199 15 KQQLLSHAIPIEFWETLGKKLQ 36 (677)
Q Consensus 15 ~~qL~~~~vP~~~w~~l~~Kl~ 36 (677)
-+--.+.-||++||++||+--.
T Consensus 9 ip~c~alkipe~~wpql~e~~s 30 (106)
T PF09241_consen 9 IPVCHALKIPEDFWPQLFEATS 30 (106)
T ss_dssp HHHHHHTT--GGGHHHHHHHHH
T ss_pred HHhhhhccCcHHHhHHHHHHHH
Confidence 4556778899999999998643
No 93
>PF02222 ATP-grasp: ATP-grasp domain; InterPro: IPR003135 The ATP-grasp domain has an unusual nucleotide-binding fold, also referred to as palmate, and is found in a superfamily of enzymes including D-alanine-D-alanine ligase, glutathione synthetase, biotin carboxylase, and carbamoyl phosphate synthetase, the ribosomal protein S6 modification enzyme (RimK), urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis. This family does not contain all known ATP-grasp domain members. All the enzymes of this family possess ATP-dependent carboxylate-amine ligase activity, and their catalytic mechanisms are likely to include acylphosphate intermediates.; PDB: 3K5H_C 3K5I_C 3AX6_A 3Q2O_B 3QFF_B 3R5H_A 3ORQ_B 3ORR_B 4E4T_B 2Z04_A ....
Probab=37.78 E-value=1.9e+02 Score=28.76 Aligned_cols=42 Identities=12% Similarity=0.140 Sum_probs=31.6
Q ss_pred CceEEEc-CCCCCCCCceEEeCChHHHHHh---hccCCceeeeecc
Q psy14199 442 NNLWIIK-PFNLARSLDSYITDNINMVIKS---ALTGPKIIQKYIE 483 (677)
Q Consensus 442 ~n~WIlK-P~n~aRG~GI~I~~~l~~I~r~---~~t~p~VVQkYIe 483 (677)
+--.|+| +..+.-|+|-.+.++.+++.+. ...+++|+.++|.
T Consensus 28 G~P~vlK~~~~GYDGkGq~~i~~~~dl~~a~~~~~~~~~ilE~~v~ 73 (172)
T PF02222_consen 28 GFPAVLKTRRGGYDGKGQFVIRSEEDLEKAWQELGGGPCILEEFVP 73 (172)
T ss_dssp TSSEEEEESSSSCTTTTEEEESSGGGHHHHHHHTTTSCEEEEE---
T ss_pred CCCEEEEccCcCcCCCccEEECCHHHHHHHHHhcCCCcEEEEeccC
Confidence 4567999 6678899999999998887654 3468899999996
No 94
>COG0754 Gsp Glutathionylspermidine synthase [Amino acid transport and metabolism]
Probab=33.58 E-value=19 Score=40.09 Aligned_cols=79 Identities=25% Similarity=0.351 Sum_probs=49.8
Q ss_pred cccccchHHHHHHHHhHhhhhccCCCCCCCcccceeecChhHHHHHHHHhhhhhcCCCceEEEcCCCCCCCCceEEeCCh
Q psy14199 385 YILTIKDLLSIVCRRNSKDIEKTTLQTSPDWLPTTYNLKTELLKFMSYYQNREKKNLNNLWIIKPFNLARSLDSYITDNI 464 (677)
Q Consensus 385 ~~LtrKd~L~~~l~~~~~~~~~~~~~~~~~~~P~Tf~L~~el~~f~~~~~~~~~~g~~n~WIlKP~n~aRG~GI~I~~~l 464 (677)
.++++|..|...-+++. ..+..+|+.|--... . .....|+.||..+-.|.+|.|+.+-
T Consensus 261 ~ilsNK~lLplLW~~fP---------nHp~LL~t~F~~~~~-~------------~~~~~yv~KPl~gREGaNv~i~~~~ 318 (387)
T COG0754 261 SILSNKALLPLLWERFP---------NHPNLLPTYFEPDDE-E------------KLGESYVRKPLFGREGANVSIFEDA 318 (387)
T ss_pred HHhccccHHHHHHHhCC---------CCcccccccCCCCcc-c------------cchhhhhccccccccCCCeeEEecC
Confidence 46777777776555533 345556655532211 1 1123499999999999999999875
Q ss_pred HHHHHhhc----cCCceeeeeccCc
Q psy14199 465 NMVIKSAL----TGPKIIQKYIENP 485 (677)
Q Consensus 465 ~~I~r~~~----t~p~VVQkYIenP 485 (677)
...+.... +.+.|.|.|.+=|
T Consensus 319 ~~~~~~~~G~Yg~eg~IyQe~~~Lp 343 (387)
T COG0754 319 GKVLDKADGPYGEEGMIYQEFYPLP 343 (387)
T ss_pred CceeecCCCCccccchhhhhhccCc
Confidence 55443322 2457899988644
No 95
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=32.98 E-value=57 Score=40.06 Aligned_cols=71 Identities=11% Similarity=0.075 Sum_probs=50.2
Q ss_pred CCcccceeecChhHHHHHHHHhhhhhcCCCceEEEcCCCCCCCCceEEeCChHHHHHhhc-----------cCCceeeee
Q psy14199 413 PDWLPTTYNLKTELLKFMSYYQNREKKNLNNLWIIKPFNLARSLDSYITDNINMVIKSAL-----------TGPKIIQKY 481 (677)
Q Consensus 413 ~~~~P~Tf~L~~el~~f~~~~~~~~~~g~~n~WIlKP~n~aRG~GI~I~~~l~~I~r~~~-----------t~p~VVQkY 481 (677)
..-+|.|=-.....++-.++-. +.+---|+|...+..|+|++++.+.+++.+..+ .+..-+.||
T Consensus 134 vPvipgt~~~~~~~ee~~~fa~-----~~gyPvmiKA~~GGGGRGMR~vr~~~~l~~~~~~AksEAkaAFG~~eVyvEk~ 208 (1149)
T COG1038 134 VPVIPGTDGPIETIEEALEFAE-----EYGYPVMIKAAAGGGGRGMRVVRSEADLAEAFERAKSEAKAAFGNDEVYVEKL 208 (1149)
T ss_pred CCccCCCCCCcccHHHHHHHHH-----hcCCcEEEEEccCCCccceeeecCHHHHHHHHHHHHHHHHHhcCCCcEEhhhh
Confidence 3456666666554444333322 235678999999999999999999999877543 245788999
Q ss_pred ccCcccc
Q psy14199 482 IENPILF 488 (677)
Q Consensus 482 IenPlLi 488 (677)
|+||==|
T Consensus 209 ve~pkHI 215 (1149)
T COG1038 209 VENPKHI 215 (1149)
T ss_pred hcCccee
Confidence 9999644
No 96
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=31.02 E-value=75 Score=40.29 Aligned_cols=44 Identities=11% Similarity=0.055 Sum_probs=35.8
Q ss_pred CceEEEcCCCCCCCCceEEeCChHHHHHhhc-------cCCceeeeeccCc
Q psy14199 442 NNLWIIKPFNLARSLDSYITDNINMVIKSAL-------TGPKIIQKYIENP 485 (677)
Q Consensus 442 ~n~WIlKP~n~aRG~GI~I~~~l~~I~r~~~-------t~p~VVQkYIenP 485 (677)
+--.|+||..+..|+|+.++++.+++..... .++.+||+||.-.
T Consensus 163 gyPvVVKP~~g~gG~Gv~iv~~~eEL~~a~~~~~~~s~~~~vLVEe~I~G~ 213 (1068)
T PRK12815 163 GFPIIVRPAYTLGGTGGGIAENLEELEQLFKQGLQASPIHQCLLEESIAGW 213 (1068)
T ss_pred CCCEEEEECcCCCCCceEEECCHHHHHHHHHHHHhcCCCCeEEEEEccCCC
Confidence 3468999999999999999999998866542 2468999999754
No 97
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=30.17 E-value=52 Score=41.58 Aligned_cols=44 Identities=14% Similarity=0.033 Sum_probs=35.8
Q ss_pred CceEEEcCCCCCCCCceEEeCChHHHHHhhc-------cCCceeeeeccCc
Q psy14199 442 NNLWIIKPFNLARSLDSYITDNINMVIKSAL-------TGPKIIQKYIENP 485 (677)
Q Consensus 442 ~n~WIlKP~n~aRG~GI~I~~~l~~I~r~~~-------t~p~VVQkYIenP 485 (677)
+--.|+||..+..|+|+.+.++.+++..... .++.+||+||.-+
T Consensus 162 gyPvIVKP~~g~gg~Gv~iv~~~eeL~~~~~~~~~~s~~~~vlVEe~I~G~ 212 (1050)
T TIGR01369 162 GYPVIVRPAFTLGGTGGGIAYNREELKEIAERALSASPINQVLVEKSLAGW 212 (1050)
T ss_pred CCCeEEECCCCCCCCCeEEECCHHHHHHHHHHHHhcCCCCcEEEEEcccCc
Confidence 3467999999999999999999998765421 2578999999865
No 98
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=29.82 E-value=54 Score=38.69 Aligned_cols=43 Identities=9% Similarity=0.029 Sum_probs=33.8
Q ss_pred CceEEEcCCCCC-CCCceEEeCChHHHHHhhc-----cCCceeeeeccC
Q psy14199 442 NNLWIIKPFNLA-RSLDSYITDNINMVIKSAL-----TGPKIIQKYIEN 484 (677)
Q Consensus 442 ~n~WIlKP~n~a-RG~GI~I~~~l~~I~r~~~-----t~p~VVQkYIen 484 (677)
+--.|+||..++ .|+|+.+.++.+++....+ +.++++++||.-
T Consensus 156 g~P~VvKP~~ggs~g~Gv~~v~~~~eL~~a~~~~~~~~~~vlvEefI~~ 204 (577)
T PLN02948 156 GYPLMLKSRRLAYDGRGNAVAKTEEDLSSAVAALGGFERGLYAEKWAPF 204 (577)
T ss_pred CCcEEEEeCCCCCCCCCeEEECCHHHHHHHHHHhhCCCCcEEEEecCCC
Confidence 446899999765 7999999999998865433 247899999963
No 99
>PF00919 UPF0004: Uncharacterized protein family UPF0004; InterPro: IPR013848 The methylthiotransferase (MTTase) or miaB-like family is named after the (dimethylallyl)adenosine tRNA MTTase miaB protein, which catalyses a C-H to C-S bond conversion in the methylthiolation of tRNA. A related bacterial enzyme rimO performs a similar methylthiolation, but on a protein substrate. RimO acts on the ribosomal protein S12 and forms a separate MTTase subfamily. The miaB-subfamily includes mammalian CDK5 regulatory subunit-associated proteins and similar proteins in other eukaryotes. Two other subfamilies, yqeV and CDKAL1, are named after a Bacillus subtilis and a human protein, respectively. While yqeV-like proteins are found in bacteria, CDKAL1 subfamily members occur in eukaryotes and in archaebacteria. The likely MTTases from these 4 subfamilies contain an N-terminal MTTase domain, a central radical generating fold and a C-terminal TRAM domain (see PDOC50926 from PROSITEDOC). The core forms a radical SAM fold (or AdoMet radical), containing a cysteine motif CxxxCxxC that binds a [4Fe-4S] cluster [, , ]. A reducing equivalent from the [4Fe-4S]+ cluster is used to cleave S-adenosylmethionine (SAM) to generate methionine and a 5'-deoxyadenosyl radical. The latter is thought to produce a reactive substrate radical that is amenable to sulphur insertion [, ]. The N-terminal MTTase domain contains 3 cysteines that bind a second [4Fe-4S] cluster, in addition to the radical-generating [4Fe-4S] cluster, which could be involved in the thiolation reaction. The C-terminal TRAM domain is not shared with other radical SAM proteins outside the MTTase family. The TRAM domain can bind to RNA substrate and seems to be important for substrate recognition. The tertiary structure of the central radical SAM fold has six beta/alpha motifs resembling a three-quarter TIM barrel core (see PDOC00155 from PROSITEDOC) []. The N-terminal MTTase domain might form an additional [beta/alpha]2 TIM barrel unit []. ; GO: 0003824 catalytic activity, 0051539 4 iron, 4 sulfur cluster binding, 0009451 RNA modification
Probab=29.81 E-value=44 Score=30.26 Aligned_cols=30 Identities=27% Similarity=0.437 Sum_probs=26.8
Q ss_pred chHHHHHHHcCCCCEEeCCCCCceEEEccc
Q psy14199 332 EYKYVSENLTHPRFVIVDNEEEADILWYTH 361 (677)
Q Consensus 332 ~~~~V~~~L~~~gf~~~~~~~~adi~W~~~ 361 (677)
|.+.+...|...||++++++++||++-..+
T Consensus 15 Dse~i~~~l~~~G~~~~~~~e~AD~iiiNT 44 (98)
T PF00919_consen 15 DSERIASILQAAGYEIVDDPEEADVIIINT 44 (98)
T ss_pred HHHHHHHHHHhcCCeeecccccCCEEEEEc
Confidence 568999999999999999999999987655
No 100
>PLN02735 carbamoyl-phosphate synthase
Probab=27.69 E-value=54 Score=41.72 Aligned_cols=42 Identities=17% Similarity=0.048 Sum_probs=34.8
Q ss_pred ceEEEcCCCCCCCCceEEeCChHHHHHhhc-------cCCceeeeeccC
Q psy14199 443 NLWIIKPFNLARSLDSYITDNINMVIKSAL-------TGPKIIQKYIEN 484 (677)
Q Consensus 443 n~WIlKP~n~aRG~GI~I~~~l~~I~r~~~-------t~p~VVQkYIen 484 (677)
---|+||..++.|.|+.++++.+++.+... ..+.+|++||.-
T Consensus 181 yPvVVKP~~~~GG~Gv~iv~n~eEL~~a~~~a~~~s~~~~VLVEe~I~G 229 (1102)
T PLN02735 181 FPLIIRPAFTLGGTGGGIAYNKEEFETICKAGLAASITSQVLVEKSLLG 229 (1102)
T ss_pred CCEEEEeCCCCCCCceEEECCHHHHHHHHHHHHhcCCCCeEEEEEecCC
Confidence 357999999999999999999998876543 246799999986
No 101
>COG3919 Predicted ATP-grasp enzyme [General function prediction only]
Probab=25.25 E-value=1.3e+02 Score=33.28 Aligned_cols=124 Identities=16% Similarity=0.149 Sum_probs=70.2
Q ss_pred hHHHHHHHcCCC---CEEeCCCCCceEEEccccccchhhhhh--cCCCeEEcccccCcccccchHHHHHHHHhHhhhhcc
Q psy14199 333 YKYVSENLTHPR---FVIVDNEEEADILWYTHHFKDFKTLAE--ETPTKFVNQFPFEYILTIKDLLSIVCRRNSKDIEKT 407 (677)
Q Consensus 333 ~~~V~~~L~~~g---f~~~~~~~~adi~W~~~~~~~~~~l~~--~~~~Q~vNhfP~~~~LtrKd~L~~~l~~~~~~~~~~ 407 (677)
...+++..++.| |-.+-.. +..++-...+......+-+ +-+++ .-.-++.|-.|++.+.++.
T Consensus 60 iafLrd~Aekhglkg~LLva~G-Dgev~lvSq~reeLSa~f~v~lp~w~------~l~wlceKPllY~ra~elg------ 126 (415)
T COG3919 60 IAFLRDFAEKHGLKGYLLVACG-DGEVLLVSQYREELSAFFEVPLPDWA------LLRWLCEKPLLYNRAEELG------ 126 (415)
T ss_pred HHHHHHHHhhcCcCceEEEecC-CceeeehHhhHHHHHHHhcCCCCcHH------HHHHHhhCcHHHHHHHHhC------
Confidence 456777777665 4455442 4455555554322111111 12222 2235778888888766542
Q ss_pred CCCCCCCcccceeecChhHHHHHHHHhhhhhcCCCceEEEcCCCCC------CCCceEEeCChHHHHHh---hc---cCC
Q psy14199 408 TLQTSPDWLPTTYNLKTELLKFMSYYQNREKKNLNNLWIIKPFNLA------RSLDSYITDNINMVIKS---AL---TGP 475 (677)
Q Consensus 408 ~~~~~~~~~P~Tf~L~~el~~f~~~~~~~~~~g~~n~WIlKP~n~a------RG~GI~I~~~l~~I~r~---~~---t~p 475 (677)
--+|.||.+..+....++.. .---|+||.++. |.+-+.+.++.+.-... .+ ...
T Consensus 127 ------l~~P~Ty~v~S~~d~~~~el--------~FPvILKP~mgg~~~~~araKa~~a~d~ee~k~a~~~a~eeigpDn 192 (415)
T COG3919 127 ------LPYPKTYLVNSEIDTLVDEL--------TFPVILKPGMGGSVHFEARAKAFTAADNEEMKLALHRAYEEIGPDN 192 (415)
T ss_pred ------CCCcceEEecchhhhhhhhe--------eeeEEecCCCCCcceeehhhheeeccCHHHHHHHHHHHHHhcCCCc
Confidence 34799999998777766543 223799999853 45555555553322111 11 245
Q ss_pred ceeeeecc
Q psy14199 476 KIIQKYIE 483 (677)
Q Consensus 476 ~VVQkYIe 483 (677)
.|||..|-
T Consensus 193 vvvQe~IP 200 (415)
T COG3919 193 VVVQEFIP 200 (415)
T ss_pred eEEEEecC
Confidence 89999883
No 102
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=23.75 E-value=82 Score=38.49 Aligned_cols=42 Identities=10% Similarity=0.092 Sum_probs=33.4
Q ss_pred CceEEEcCCCCCCCCceEEeCChHHHHHhhc-----cCCceeeeecc
Q psy14199 442 NNLWIIKPFNLARSLDSYITDNINMVIKSAL-----TGPKIIQKYIE 483 (677)
Q Consensus 442 ~n~WIlKP~n~aRG~GI~I~~~l~~I~r~~~-----t~p~VVQkYIe 483 (677)
+---|+||.++.-|.||.++++.+++.+..+ ..+.+|++||.
T Consensus 610 g~P~iVKP~~~GsS~Gv~~v~~~~el~~a~~~a~~~~~~vlVEe~i~ 656 (809)
T PRK14573 610 SFPMFVKTAHLGSSIGVFEVHNVEELRDKISEAFLYDTDVFVEESRL 656 (809)
T ss_pred CCCEEEeeCCCCCCCCEEEECCHHHHHHHHHHHHhcCCcEEEEeccC
Confidence 4468999999999999999999999876543 24577888774
No 103
>TIGR01795 CM_mono_cladeE monofunctional chorismate mutase, alpha proteobacterial type. The alpha proteobacterial members are trusted because the pathways of CM are evident and there is only one plausible CM in the genome. In S. coelicolor, however, there is another aparrent monofunctional CM.
Probab=22.43 E-value=99 Score=27.95 Aligned_cols=34 Identities=21% Similarity=0.285 Sum_probs=26.0
Q ss_pred HHHHhHHHHHhCCCChHHHHHHHHhh-------hhcccccc
Q psy14199 10 FLDNHKQQLLSHAIPIEFWETLGKKL-------QNHIFDAG 43 (677)
Q Consensus 10 F~~~H~~qL~~~~vP~~~w~~l~~Kl-------~~e~fDaG 43 (677)
=++.........|+|+.|+..||+.+ +++++|+|
T Consensus 53 vl~~~~~~a~~~gl~p~~~e~i~~~i~~esir~q~~~~~~~ 93 (94)
T TIGR01795 53 QIARLRRLAIDAGLDPEFAEKFLNFIVTEVIKHHERIADAG 93 (94)
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 34455667788999999999999975 45567776
No 104
>COG1759 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate synthetase (purine biosynthesis) [Nucleotide transport and metabolism]
Probab=20.96 E-value=1.1e+02 Score=33.95 Aligned_cols=55 Identities=16% Similarity=0.221 Sum_probs=41.8
Q ss_pred cccceeecChhHHHHHHHHhhhhhcCCCceEEEcCCCCCCCCceEEeCChHHHHHhhcc------------CCceeeeec
Q psy14199 415 WLPTTYNLKTELLKFMSYYQNREKKNLNNLWIIKPFNLARSLDSYITDNINMVIKSALT------------GPKIIQKYI 482 (677)
Q Consensus 415 ~~P~Tf~L~~el~~f~~~~~~~~~~g~~n~WIlKP~n~aRG~GI~I~~~l~~I~r~~~t------------~p~VVQkYI 482 (677)
=+|+.|.-|.|. +..-|+|+...-+|+|-++.++.++.....+. ....+|+||
T Consensus 138 ~~P~~~~~PeeI---------------dr~VIVK~pgAkggRGyFiA~s~eef~ek~e~l~~~gvi~~edlkna~IeEYv 202 (361)
T COG1759 138 RIPKKYKSPEEI---------------DRPVIVKLPGAKGGRGYFIASSPEEFYEKAERLLKRGVITEEDLKNARIEEYV 202 (361)
T ss_pred CCCcccCChHHc---------------CCceEEecCCccCCceEEEEcCHHHHHHHHHHHHHcCCcchhhhhhceeeEEe
Confidence 367777777544 45789999988889999999999887654431 357899998
Q ss_pred cC
Q psy14199 483 EN 484 (677)
Q Consensus 483 en 484 (677)
--
T Consensus 203 ~G 204 (361)
T COG1759 203 VG 204 (361)
T ss_pred ec
Confidence 63
No 105
>COG0151 PurD Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism]
Probab=20.74 E-value=1.9e+02 Score=33.20 Aligned_cols=45 Identities=9% Similarity=0.070 Sum_probs=33.1
Q ss_pred ceeecChhHHHHHHHHhhhhhcCCCceEEEcCCCCCCCCceEEeCChHHHHHh
Q psy14199 418 TTYNLKTELLKFMSYYQNREKKNLNNLWIIKPFNLARSLDSYITDNINMVIKS 470 (677)
Q Consensus 418 ~Tf~L~~el~~f~~~~~~~~~~g~~n~WIlKP~n~aRG~GI~I~~~l~~I~r~ 470 (677)
.+|.=+.+...|++.+ ...|.+||..++.|+|..|..+.++..+.
T Consensus 122 ~~f~~~e~a~ayi~~~--------g~piVVKadGLaaGKGV~V~~~~eeA~~a 166 (428)
T COG0151 122 EVFTDPEEAKAYIDEK--------GAPIVVKADGLAAGKGVIVAMTLEEAEAA 166 (428)
T ss_pred cccCCHHHHHHHHHHc--------CCCEEEecccccCCCCeEEcCCHHHHHHH
Confidence 5565445555555432 34599999999999999999998877654
Done!