RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14199
(677 letters)
>3tig_A TTL protein; ATP-grAsp, ligase, tubulin; 2.50A {Silurana} PDB:
3tii_A* 3tin_A*
Length = 380
Score = 122 bits (306), Expect = 3e-30
Identities = 61/354 (17%), Positives = 114/354 (32%), Gaps = 84/354 (23%)
Query: 347 IVDNEEEADILWYTHHFKDFKTLA-EETPTKFVNQFPFEYILTIKDLLSIVCRRNSKDIE 405
+ + + +++ + F L E + VN + L K L + + + + E
Sbjct: 33 LKRDNPKFNLMLGERNRLPFGRLGHEPGLVQLVNYYRGADKLCRKASLVKLIKTSPELTE 92
Query: 406 KTTLQT-SPDWLPTTYNLKT-----------------ELLKFMSYYQNREKKNLNNLWII 447
T S PT E +F S + +++ N+WI
Sbjct: 93 TCTWFPESYVIYPTNEKTPAMRARNGLPDLANAPRTDEREEFRSSFNKKKENEEGNVWIA 152
Query: 448 KPFNLARSLDSYITDNINMVIKSALTGPK--IIQKYIENPILFYRDDLSGKVKFDVRYVV 505
K + A+ I+ + ++ + +IQKY+E+P+L G KFD+R V
Sbjct: 153 KSSSGAKGEGILISSDATELLDFIDNQGQVHVIQKYLESPLLLE----PGHRKFDIRSWV 208
Query: 506 LVKSVKPLKVYLYKNFFLRDDLSGKVKFDVRYVVLVKSVKPLKVYLYKNFFLRFANKPFE 565
LV + +YLY+ LR +++P+
Sbjct: 209 LVDN------------------------------------QYNIYLYREGVLRTSSEPYS 232
Query: 566 LSKFDDYEIHFTVM--------NYDDKTPLCKMLCSDFKIEFEKQNPNENWDHIESKINP 617
+ F D H T NY +M +F ++ + +N
Sbjct: 233 DTNFQDMTSHLTNHCIQKEHSKNYGRYEEGNEMFFEEF------------NQYLVTSLNI 280
Query: 618 SENWDHIESKIVTMFRSVFEAATMKDPPLGLGHNVQSRSLYAADLMLTKQNNSY 671
+ I +I + R L ++ S L+ D M+ K +
Sbjct: 281 -NLENSILCQIKEIIRVCLSCLEPAISTKYLPYH--SFQLFGFDFMVDKNLKVW 331
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 60.3 bits (145), Expect = 2e-09
Identities = 83/519 (15%), Positives = 153/519 (29%), Gaps = 140/519 (26%)
Query: 221 YQDPDIRKVLLHPWFPNSYCEVDFNQIEPGA-EYFSSGHIEE--HLPSSPTVTNIITDED 277
YQ DI V + N D ++ S I+ + + T +
Sbjct: 16 YQYKDILSVFEDAFVDN----FDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFW-- 69
Query: 278 KILKVYSEYKYVDF--NQIEPGAEYFSSG-HIEEHLPSSPTVT------DIITDEDKILK 328
L E F + ++ S E+ PS T + D K
Sbjct: 70 -TLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAK 128
Query: 329 --VYSEYKYVS-----ENLTHPRFVIVDNEEEADILWYTHHFKDF-KT-LAEET--PTKF 377
V Y+ L + V++ KT +A + K
Sbjct: 129 YNVSRLQPYLKLRQALLELRPAKNVLI------------DGVLGSGKTWVALDVCLSYKV 176
Query: 378 VNQFPFE-YILTIK------DLLSIV---CRRNSKDIEKTTLQTSPDWLPTTYNLKTELL 427
+ F+ + L +K +L ++ + + + +S L +++ EL
Sbjct: 177 QCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIH-SIQAELR 235
Query: 428 KFMSYYQNREKKN----LNNLW---IIKPFNL-ARSL----DSYITDNINMV-------- 467
+ + +++ +N L N+ FNL + L +TD ++
Sbjct: 236 RLL---KSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLD 292
Query: 468 -IKSALTGPK---IIQKYIENPILFYRDDLSGKVKFDVRYVVLVKSVKPLKVYL----YK 519
LT + ++ KY++ DL V + P ++ + +
Sbjct: 293 HHSMTLTPDEVKSLLLKYLDCRP----QDLP----------REVLTTNPRRLSIIAESIR 338
Query: 520 NFFLRDDLSGKVKFDVRYVVLVKSVKPLKVYLYKNFFLRFA------NKPFE-LSKF--- 569
+ D V D ++ S+ L+ Y+ F R + + P LS
Sbjct: 339 DGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFD 398
Query: 570 DDYEIHFTVMNYDDKTPLCK-----MLCSDFKIEFEKQNPNENWDHIESKI----NPSEN 620
V+N K L + S I E + EN + I N +
Sbjct: 399 VIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKT 458
Query: 621 WD---------------HI--------ESKIVTMFRSVF 636
+D HI + +T+FR VF
Sbjct: 459 FDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVF 497
Score = 57.2 bits (137), Expect = 1e-08
Identities = 84/655 (12%), Positives = 185/655 (28%), Gaps = 176/655 (26%)
Query: 10 FLDNHKQQLLSHAIPIEFWETLGKKLQNHIFDAGNHFSVLRFEYNDDERGETDPLYKVVV 69
F D + L K+ +HI + + S + + + + K V
Sbjct: 25 FEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFV- 83
Query: 70 SNEDGIKKSDRSNIFLIDHAWTYSITTARSDLYSNPNLLERMSNLMGVDVDSDTDDKVEQ 129
E+ ++ ++ + + + P+++ RM + D++
Sbjct: 84 --EEVLRI---------NYKF---LMSPIKTEQRQPSMMTRMYI--------EQRDRLYN 121
Query: 130 VFHEMWKYNNTYSVKSTADGDTLL---PVWYI----MDEFG------SAIQHSDEPNMRI 176
KYN + LL P + + G
Sbjct: 122 DNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCL--SYKVQCK 179
Query: 177 VPF-IY-LNEGIAYSILYPIIIKILIFVKFCYIL-GSLILTIDYVESYQDP------DIR 227
+ F I+ LN S ++++L K Y + + D+ + + ++R
Sbjct: 180 MDFKIFWLNLKNCNSP--ETVLEML--QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR 235
Query: 228 KVLLHPWFPNSYCEVDFNQIEPGAEYFSSGHIEEHLPSSPTVTNIITDEDK----ILKVY 283
++L + N + ++ S ++T K L
Sbjct: 236 RLLKSKPYENCLLVLL--------NVQNAKAWNAFNLSCKI---LLTTRFKQVTDFLSA- 283
Query: 284 SEYKYVDFNQIEPG------AEYFSS--GHIEEHLPS-----SPTVTDIITDEDKI-LKV 329
+ ++ + + LP +P II + + L
Sbjct: 284 ATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLAT 343
Query: 330 YSEYKYV-SENLTHPRFVIVDNEEEADILWYTHHFKDF-----------KTLA------- 370
+ +K+V + LT ++ E A+ Y F L+
Sbjct: 344 WDNWKHVNCDKLTTIIESSLNVLEPAE---YRKMFDRLSVFPPSAHIPTILLSLIWFDVI 400
Query: 371 EETPTKFVNQF---------PFEYILTIKDL-LSIVC-RRNSKDIEKTTLQTSPDWLPTT 419
+ VN+ P E ++I + L + N + +
Sbjct: 401 KSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHR------------- 447
Query: 420 YNLKTELLKFMSYYQNREKKNLNNLWIIKPFNLARSLDSYITDNINMVIKSA--LTGPKI 477
+ +Y + + ++L I P+ LD Y +I L +
Sbjct: 448 --------SIVDHYNIPKTFDSDDL--IPPY-----LDQYFYSHI------GHHLKNIEH 486
Query: 478 IQKYIENPILFYRDD-LSGKVKFDVRYVVLVKSVKPL--KVYLYKNFFLRDDLSGKVKFD 534
++ ++F L K++ D S+ ++ YK + +D
Sbjct: 487 PERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDP------- 539
Query: 535 VRYVVLVKSVKPLKVYLYKNFFLRFANKPFELSKFDDYEIHFTVMN-----YDDK 584
+Y LV + +F + SK+ D + +M +++
Sbjct: 540 -KYERLVNA--------ILDFLPKIEENLIC-SKYTDL-LRIALMAEDEAIFEEA 583
Score = 53.7 bits (128), Expect = 2e-07
Identities = 52/359 (14%), Positives = 106/359 (29%), Gaps = 110/359 (30%)
Query: 359 YTHHFKDFKTLAEETPTKFVNQFPFEYILTIKDLLSIVCRRNSKDIEKTTLQTSPDWLPT 418
+ HH DF+T + ++Y KD+LS+ + + + D +
Sbjct: 2 HHHHHMDFET----------GEHQYQY----KDILSVFEDAFVDNFD---CKDVQDMPKS 44
Query: 419 TYNLKTELLKFMSYYQNREKKNLNNLWII--KPFNLA-RSLDSYITDNINMV---IKSAL 472
L E + + ++ L W + K + + ++ + N + IK+
Sbjct: 45 I--LSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQ 102
Query: 473 TGPKIIQK-YIENPILFYRDDLSGKV-KFDVRYVVLVKSVKPLKVYLYKNFFLRDDLSGK 530
P ++ + YIE RD L F V ++ L+ L + LR
Sbjct: 103 RQPSMMTRMYIE-----QRDRLYNDNQVFAKYNVSRLQPYLKLRQALLE---LRPA---- 150
Query: 531 VKFDVRYVVLV------KSVKPLKVYLYKNFFLRFANKPFELSKFDDYEIHFTVMNYDDK 584
+ V++ K+ L V L + K F L + N +
Sbjct: 151 -----KNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWL----------NLKNCNSP 195
Query: 585 TPLCKM---LCSDFKIEFEKQNPNENWDHIESKINPSENW-------------------- 621
+ +M L N DH + +
Sbjct: 196 ETVLEMLQKLLYQI-----DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVL 250
Query: 622 DHIESK-------------IVTMFRSVFEAA--------TMKDPPLGLGHNVQSRSLYA 659
++++ + T F+ V + ++ + L + + +SL
Sbjct: 251 LNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPD-EVKSLLL 308
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.1 bits (88), Expect = 0.010
Identities = 54/342 (15%), Positives = 107/342 (31%), Gaps = 139/342 (40%)
Query: 12 DNHKQQLLSHAI-------PIE----FWETLGKKL-QNHIFDAGNHFSVLRFEYNDDERG 59
DNH + +I P+ F GK++ +N +S + FE D +
Sbjct: 1650 DNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIREN--------YSAMIFETIVDGKL 1701
Query: 60 ETDPLYKVVVSNEDGIKKSDRSNIFLIDHAWTYSITTARSDLYSNPN-LLERMSN----- 113
+T+ ++K + NE + S T + + LL
Sbjct: 1702 KTEKIFKEI--NEH-----------------STSYT------FRSEKGLLSATQFTQPAL 1736
Query: 114 -LMGV----DVDSDTDDKVEQVF--H---EMWKYNNTYS-------VKSTADGDTLLPVW 156
LM D+ S + F H E Y+ V S ++
Sbjct: 1737 TLMEKAAFEDLKSKGLIPADATFAGHSLGE-------YAALASLADVMSIESLVEVV--- 1786
Query: 157 YIMDEF--GSAIQHS---DEPNMRIVPFIYLNEGIAYSILYPIIIKILIFVKFCYILGSL 211
F G +Q + DE I +N G ++ +
Sbjct: 1787 -----FYRGMTMQVAVPRDELGRSNYGMIAINPG-----------RV-----------AA 1819
Query: 212 ILTIDYVESYQDPDIRKVLLHPWFPNSYCE-VDFNQIEPGAEYFSSGHIE--EHLPSSPT 268
+ + ++ + ++ E V++N +Y ++G + + T
Sbjct: 1820 SFSQEALQYVVERVGKRT-------GWLVEIVNYN--VENQQYVAAGDLRALD------T 1864
Query: 269 VTNIITDEDKILKVYSEYKYVDFNQIEPGAEYFSSGHIEEHL 310
VTN++ +K+ + +D +++ + S +E HL
Sbjct: 1865 VTNVL----NFIKL----QKIDIIELQ---KSLSLEEVEGHL 1895
Score = 33.9 bits (77), Expect = 0.25
Identities = 31/170 (18%), Positives = 57/170 (33%), Gaps = 60/170 (35%)
Query: 258 HIEEHLPSSPTVTNIITDEDKILKVYSEYKYVDFNQIEPGAEYFSSGHIEEHLPSSPTVT 317
H ++ S + +I+ + L ++ F G E I E+ S+
Sbjct: 1652 HFKDTYGFS--ILDIVINNPVNLTIH-------F-----GGE--KGKRIRENY-SAMIFE 1694
Query: 318 DIITDEDKILKVYSEYKYVSENLTHPRFVIVDNEEEADILWYTHH------------FKD 365
I+ + K K++ E ++E+ T F E +L T F+D
Sbjct: 1695 TIVDGKLKTEKIFKE---INEHSTSYTF-----RSEKGLLSATQFTQPALTLMEKAAFED 1746
Query: 366 FKTLAEE--TPTKFVNQFPF------EY--------ILTIKDLLSIVCRR 399
K + P F EY +++I+ L+ +V R
Sbjct: 1747 LK---SKGLIPADAT----FAGHSLGEYAALASLADVMSIESLVEVVFYR 1789
Score = 32.7 bits (74), Expect = 0.56
Identities = 25/153 (16%), Positives = 47/153 (30%), Gaps = 42/153 (27%)
Query: 534 DVRYVVLVKSVKPLKVYLY----KNFFLR--------FANK-----PFEL-SKFDDYEIH 575
+ +V+LV P + + F + FA P EL KF +
Sbjct: 15 SLEHVLLV----PTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKF----LG 66
Query: 576 FTVMNYDDKT-----PLCKMLCSDFKIEFEKQNPNENWD-H-IESKINPSENWDHIESKI 628
+ + + + ++F+ + + N D H + +K+ D K
Sbjct: 67 YVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGN-----DIHALAAKLLQEN--DTTLVKT 119
Query: 629 VTMFRSVFEAATMKDPPLGLGHNVQSRSLYAAD 661
+ ++ A M P N S A
Sbjct: 120 KELIKNYITARIMAKRPFDKKSN--SALFRAVG 150
Score = 30.0 bits (67), Expect = 3.7
Identities = 12/67 (17%), Positives = 19/67 (28%), Gaps = 17/67 (25%)
Query: 8 SEFLDNHKQQLLSHAIPIEFWETLGKKLQNHIFDAGNHFSVLRFEYNDDERGETDPLYKV 67
+ ++ + WET + HI D G G L +
Sbjct: 473 GSISERIVDCIIRLPV---KWETTTQFKATHILDFG--------------PGGASGLGVL 515
Query: 68 VVSNEDG 74
N+DG
Sbjct: 516 THRNKDG 522
>1g01_A Endoglucanase; alpha/beta barrel, TIM barrel, hydrolase; 1.90A
{Bacillus SP} SCOP: c.1.8.3 PDB: 1g0c_A*
Length = 364
Score = 30.8 bits (69), Expect = 1.4
Identities = 14/153 (9%), Positives = 44/153 (28%), Gaps = 26/153 (16%)
Query: 25 IEFWETLGKKLQNH------IFDAGN--HFSVLRFEYNDDERGETDPLYKVVVSNEDGIK 76
+F+E + ++H I++ N + ++ + + + + ++
Sbjct: 127 YDFFEEIADHYKDHPKNHYIIWELANEPSPNNNGGPGLTNDEKGWEAVKEYAEPIVEMLR 186
Query: 77 KSDRSNIFLIDHAWTYSITTARSDLYSNPNLL------ERMSNLMGVDVDSDTDDKVEQV 130
+ + I + + W+ + + N++ + T
Sbjct: 187 EKGDNMILVGNPNWSQRPDLSADNPIDAENIMYSVHFYTGSHGASHIGYPEGTPSSERSN 246
Query: 131 FHEMWKYNNTYSVKSTADGDTLLPVWYIMDEFG 163
+Y D + V+ E+G
Sbjct: 247 VMANVRYAL----------DNGVAVF--ATEWG 267
>3quf_A Extracellular solute-binding protein, family 1; structural
genomics, PSI-biology, midwest center for structu
genomics, MCSG; HET: MSE; 1.70A {Bifidobacterium longum
subsp}
Length = 414
Score = 29.7 bits (67), Expect = 3.6
Identities = 8/37 (21%), Positives = 14/37 (37%), Gaps = 5/37 (13%)
Query: 598 EFEKQNPNENWDHIESKINPSENWDHIESKIVTMFRS 634
FEK+NP+ I + ++ S + T
Sbjct: 49 GFEKKNPD-----ITLDVQYGQDPAQYISTLQTRLAG 80
>1wix_A HOOK homolog 1, RSGI RUH-026; structural genomics, mouse cDNA,
riken structural genomics/proteomics initiative, unknown
function; NMR {Mus musculus} SCOP: a.40.3.1
Length = 164
Score = 28.5 bits (63), Expect = 5.4
Identities = 15/82 (18%), Positives = 31/82 (37%), Gaps = 2/82 (2%)
Query: 404 IEKTTLQTSPDWLPTTYNLKTELLKFMSYYQNREKKNLNNLWIIKPFNLARSLDS-YITD 462
+ + +W NLK L SYY + ++ I + D +
Sbjct: 56 LSRIKDDVGDNWRIKASNLKKVLHGITSYYHEFLGQQISEELIPDLNQITECADPVELGR 115
Query: 463 NINMVIKSALTGPKIIQKYIEN 484
+ +++ A+ K Q++I+N
Sbjct: 116 LLQLILGCAVNCEK-KQEHIKN 136
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.137 0.411
Gapped
Lambda K H
0.267 0.0570 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 10,639,454
Number of extensions: 659651
Number of successful extensions: 1308
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1290
Number of HSP's successfully gapped: 21
Length of query: 677
Length of database: 6,701,793
Length adjustment: 100
Effective length of query: 577
Effective length of database: 3,909,693
Effective search space: 2255892861
Effective search space used: 2255892861
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (27.6 bits)