RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy14199
         (677 letters)



>d1bqca_ c.1.8.3 (A:) Beta-mannanase {Thermomonospora fusca [TaxId:
           2021]}
          Length = 302

 Score = 31.4 bits (70), Expect = 0.37
 Identities = 15/179 (8%), Positives = 38/179 (21%), Gaps = 18/179 (10%)

Query: 10  FLDNHKQQLLSHAIPIEFWETLGKKLQNHIFDAGNHFSVLRF----EYNDDERGETDPLY 65
            L+ H              +                   +      E   ++        
Sbjct: 82  MLEVHDTTGYGEQSGASTLDQAVDYWIELKSVLQGEEDYVLINIGNEPYGNDSATVAAWA 141

Query: 66  KVVVSNEDGIKKSDRSNIFLID-HAWTYSITTARSDLYSNPNLLERMSNLMGVDVDSDTD 124
               +    ++ +   +  ++D   W    T    +        +   N +         
Sbjct: 142 TDTSAAIQRLRAAGFEHTLVVDAPNWGQDWTNTMRNNADQVYASDPTGNTVFS------- 194

Query: 125 DKVEQVFHEMWKYNNTYSVKSTADGDTLLPVWYIMDEFGSAIQHSDEPNMRIVPFIYLN 183
                  H    Y+   ++ S  +      +  I+ EFG      +     I+      
Sbjct: 195 ------IHMYGVYSQASTITSYLEHFVNAGLPLIIGEFGHDHSDGNPDEDTIMAEAERL 247


>d2f69a2 b.85.7.1 (A:194-364) Histone H3 K4-specific
           methyltransferase SET7/9 catalytic domain {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 171

 Score = 28.2 bits (62), Expect = 2.2
 Identities = 17/122 (13%), Positives = 29/122 (23%), Gaps = 15/122 (12%)

Query: 115 MGVDVDSDTDDKVEQVFHE-MWKYNNTYSVKSTADGDTLLPVWYIMDEFGSAIQHSDEPN 173
            GV +     D  +   +      +    +      +    V       G    HS  PN
Sbjct: 53  NGVRITHQEVDSRDWALNGNTLSLDEETVIDVPEPYN---HVSKYCASLGHKANHSFTPN 109

Query: 174 MRIVPFIYLNEGIAYSILYPIIIKILIFVKFCYILGSLILTIDYVESYQDPDIRKVLLHP 233
                F++   G            I        +     LT+ Y   +  P         
Sbjct: 110 CIYDMFVHPRFG-----------PIKCIRTLRAVEADEELTVAYGYDHSPPGKSGPEAPE 158

Query: 234 WF 235
           W+
Sbjct: 159 WY 160


>d1wixa_ a.40.3.1 (A:) Hook homolog 1, Hook1 {Mouse (Mus musculus)
           [TaxId: 10090]}
          Length = 164

 Score = 27.9 bits (62), Expect = 2.8
 Identities = 15/82 (18%), Positives = 30/82 (36%), Gaps = 2/82 (2%)

Query: 404 IEKTTLQTSPDWLPTTYNLKTELLKFMSYYQNREKKNLNNLWIIKPFNLARSLDSYITDN 463
           + +       +W     NLK  L    SYY     + ++   I     +    D      
Sbjct: 56  LSRIKDDVGDNWRIKASNLKKVLHGITSYYHEFLGQQISEELIPDLNQITECADPVELGR 115

Query: 464 I-NMVIKSALTGPKIIQKYIEN 484
           +  +++  A+   K  Q++I+N
Sbjct: 116 LLQLILGCAVNCEK-KQEHIKN 136


>d1jmca1 b.40.4.3 (A:183-298) Replication protein A 70 KDa subunit
           (RPA70) {Human (Homo sapiens) [TaxId: 9606]}
          Length = 116

 Score = 27.1 bits (60), Expect = 3.4
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 4/55 (7%)

Query: 526 DLSGKVK---FDVRYVVLVKSVKPLKVYLYKNFFLRFANKPFELSKFDDYEIHFT 577
           D SG+++   F+ +       ++  KVY +    L+ ANK F   K  DYE+ F 
Sbjct: 46  DESGEIRATAFNEQVDKFFPLIEVNKVYYFSKGTLKIANKQFTAVKN-DYEMTFN 99


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.137    0.411 

Gapped
Lambda     K      H
   0.267   0.0533    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,680,034
Number of extensions: 135195
Number of successful extensions: 356
Number of sequences better than 10.0: 1
Number of HSP's gapped: 355
Number of HSP's successfully gapped: 14
Length of query: 677
Length of database: 2,407,596
Length adjustment: 91
Effective length of query: 586
Effective length of database: 1,158,166
Effective search space: 678685276
Effective search space used: 678685276
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.8 bits)