BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy1420
         (241 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1XXL|A Chain A, The Crystal Structure Of Ycgj Protein From Bacillus
           Subitilis At 2.1 A Resolution
 pdb|1XXL|B Chain B, The Crystal Structure Of Ycgj Protein From Bacillus
           Subitilis At 2.1 A Resolution
 pdb|2GLU|A Chain A, The Crystal Structure Of Ycgj Protein From Bacillus
           Subitilis
 pdb|2GLU|B Chain B, The Crystal Structure Of Ycgj Protein From Bacillus
           Subitilis
          Length = 239

 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 30/54 (55%)

Query: 152 LRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 205
           +RF +  AE LP   DS+   T  +   + + + KA+ E  RVLK  GRFL ++
Sbjct: 71  VRFQQGTAESLPFPDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVD 124


>pdb|3MGG|A Chain A, Crystal Structure Of Methyl Transferase From
           Methanosarcina Mazei
 pdb|3MGG|B Chain B, Crystal Structure Of Methyl Transferase From
           Methanosarcina Mazei
          Length = 276

 Score = 39.7 bits (91), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 31/57 (54%)

Query: 152 LRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH 208
           ++FL+AN   LP E  S+    + F + ++   ++AL    +VLKPGG    +E  H
Sbjct: 89  VKFLQANIFSLPFEDSSFDHIFVCFVLEHLQSPEEALKSLKKVLKPGGTITVIEGDH 145


>pdb|2PXX|A Chain A, Human Putative Methyltransferase Mgc2408
          Length = 215

 Score = 35.4 bits (80), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 6/68 (8%)

Query: 180 NVTRIDKALSEAYRVLKPGGRFLCLEFSHEEFKSMIESAGFQYVTYENLTFG------VV 233
            V  +D+ LSE  RVL PGGRF+ +  +   F++   +  +   +  + T+G      + 
Sbjct: 134 GVHTVDQVLSEVSRVLVPGGRFISMTSAAPHFRTRHYAQAYYGWSLRHATYGSGFHFHLY 193

Query: 234 AIHSGFKL 241
            +H G KL
Sbjct: 194 LMHKGGKL 201


>pdb|1VLM|A Chain A, Crystal Structure Of Sam-Dependent Methyltransferase,
           Possible Histamine N-Methyltransferase (Tm1293) From
           Thermotoga Maritima At 2.20 A Resolution
 pdb|1VLM|B Chain B, Crystal Structure Of Sam-Dependent Methyltransferase,
           Possible Histamine N-Methyltransferase (Tm1293) From
           Thermotoga Maritima At 2.20 A Resolution
          Length = 219

 Score = 34.3 bits (77), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 26/45 (57%)

Query: 155 LEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGG 199
           L+  AE LP++ +S+        I  V   ++AL EAYR+LK GG
Sbjct: 89  LKGTAENLPLKDESFDFALXVTTICFVDDPERALKEAYRILKKGG 133


>pdb|1VL5|A Chain A, Crystal Structure Of A Putative Methyltransferase (Bh2331)
           From Bacillus Halodurans C-125 At 1.95 A Resolution
 pdb|1VL5|B Chain B, Crystal Structure Of A Putative Methyltransferase (Bh2331)
           From Bacillus Halodurans C-125 At 1.95 A Resolution
 pdb|1VL5|C Chain C, Crystal Structure Of A Putative Methyltransferase (Bh2331)
           From Bacillus Halodurans C-125 At 1.95 A Resolution
 pdb|1VL5|D Chain D, Crystal Structure Of A Putative Methyltransferase (Bh2331)
           From Bacillus Halodurans C-125 At 1.95 A Resolution
          Length = 260

 Score = 33.9 bits (76), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 16/59 (27%), Positives = 31/59 (52%)

Query: 149 NPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFS 207
           + ++ +++ +AE+ P   + +   T      +       +SEAYRVLK GG+ L ++ S
Sbjct: 84  HQQVEYVQGDAEQXPFTDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDNS 142


>pdb|3BUS|A Chain A, Crystal Structure Of Rebm
 pdb|3BUS|B Chain B, Crystal Structure Of Rebm
          Length = 273

 Score = 33.5 bits (75), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 19/56 (33%), Positives = 28/56 (50%)

Query: 151 RLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEF 206
           R+ F  A+A +LP E  S+ A      + +     +AL E  RVL+PGG     +F
Sbjct: 112 RVTFSYADAXDLPFEDASFDAVWALESLHHXPDRGRALREXARVLRPGGTVAIADF 167


>pdb|2YQZ|A Chain A, Crystal Structure Of Hypothetical Methyltransferase
           Ttha0223 From Thermus Thermophilus Hb8 Complexed With
           S-adenosylmethionine
 pdb|2YQZ|B Chain B, Crystal Structure Of Hypothetical Methyltransferase
           Ttha0223 From Thermus Thermophilus Hb8 Complexed With
           S-adenosylmethionine
 pdb|2YR0|A Chain A, Crystal Structure Of Hypothetical Methyltransferase
           Ttha0223 From Thermus Thermophilus Hb8
 pdb|2YR0|B Chain B, Crystal Structure Of Hypothetical Methyltransferase
           Ttha0223 From Thermus Thermophilus Hb8
          Length = 263

 Score = 32.7 bits (73), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 31/60 (51%)

Query: 143 DKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFL 202
            KI   + +++ ++A+A  +P+  +S     +      V    K L+EA RVLKPGG  L
Sbjct: 79  QKIAGVDRKVQVVQADARAIPLPDESVHGVIVVHLWHLVPDWPKVLAEAIRVLKPGGALL 138


>pdb|2ZFU|A Chain A, Structure Of The Methyltransferase-Like Domain Of
           Nucleomethylin
 pdb|2ZFU|B Chain B, Structure Of The Methyltransferase-Like Domain Of
           Nucleomethylin
          Length = 215

 Score = 32.3 bits (72), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 27/100 (27%), Positives = 41/100 (41%), Gaps = 8/100 (8%)

Query: 132 IAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEA 191
           +A  IRN      +   +PR+     +  ++P+E +S         +   T I   L EA
Sbjct: 81  LASSIRNPVHCFDLASLDPRVTV--CDMAQVPLEDESVDVAVFCLSLMG-TNIRDFLEEA 137

Query: 192 YRVLKPGGRFLCLEFSH-----EEFKSMIESAGFQYVTYE 226
            RVLKPGG     E S        F   +   GF+ V+ +
Sbjct: 138 NRVLKPGGLLKVAEVSSRFEDVRTFLRAVTKLGFKIVSKD 177


>pdb|3DLC|A Chain A, Crystal Structure Of A Putative
           S-Adenosyl-L-Methionine-Dependent Methyltransferase
           (Mmp1179) From Methanococcus Maripaludis At 1.15 A
           Resolution
          Length = 219

 Score = 32.3 bits (72), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 19/71 (26%), Positives = 39/71 (54%), Gaps = 3/71 (4%)

Query: 149 NPRLRFLEANAEELPIESDSYSAYTIAFG-IRNVTRIDKALSEAYRVLKPGGR-FLCLEF 206
           N R++ ++ +   +PIE D+Y+   ++ G +     +  A  E YR+LK GG+ ++   F
Sbjct: 92  NDRIQIVQGDVHNIPIE-DNYADLIVSRGSVFFWEDVATAFREIYRILKSGGKTYIGGGF 150

Query: 207 SHEEFKSMIES 217
            ++E +  I +
Sbjct: 151 GNKELRDSISA 161


>pdb|2AVN|A Chain A, Crystal Structure Of A UbiquinoneMENAQUINONE BIOSYNTHESIS
           Methyltransferase-Related Protein (Tm1389) From
           Thermotoga Maritima Msb8 At 2.35 A Resolution
 pdb|2AVN|B Chain B, Crystal Structure Of A UbiquinoneMENAQUINONE BIOSYNTHESIS
           Methyltransferase-Related Protein (Tm1389) From
           Thermotoga Maritima Msb8 At 2.35 A Resolution
          Length = 260

 Score = 32.0 bits (71), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 45/201 (22%), Positives = 78/201 (38%), Gaps = 71/201 (35%)

Query: 2   KLPMYEVFENVAKSYDTMNDAMSFGI-HRLWKDIFIDRLGPTHDTKLLDVAGGTDPLANL 60
           KL  +E ++ +A++YD+  +   + + HRL      + L   +  ++LD+ GGT      
Sbjct: 14  KLRSWEFYDRIARAYDSXYETPKWKLYHRLIGSFLEEYL--KNPCRVLDLGGGT------ 65

Query: 61  LFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEEL 120
                                  G+W  +      +++   ++ + +P    LE   E+ 
Sbjct: 66  -----------------------GKWSLF------LQERGFEVVLVDPSKEXLEVAREK- 95

Query: 121 PIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFG--I 178
                         G++NV               +EA AE+LP  S ++ A  +A G  +
Sbjct: 96  --------------GVKNV---------------VEAKAEDLPFPSGAFEA-VLALGDVL 125

Query: 179 RNVTRIDKALSEAYRVLKPGG 199
             V   DKA SE  RVL P G
Sbjct: 126 SYVENKDKAFSEIRRVLVPDG 146


>pdb|2Z1Z|A Chain A, Crystal Structure Of Ll-diaminopimelate Aminotransferase
           From Arabidopsis Thaliana Complexed With L-malate Ion
 pdb|2Z1Z|B Chain B, Crystal Structure Of Ll-diaminopimelate Aminotransferase
           From Arabidopsis Thaliana Complexed With L-malate Ion
 pdb|3EI5|A Chain A, Crystal Structure Of Ll-Diaminopimelate Aminotransferase
           From Arabidopsis Thaliana Complexed With Plp-Glu: An
           External Aldimine Mimic
 pdb|3EI5|B Chain B, Crystal Structure Of Ll-Diaminopimelate Aminotransferase
           From Arabidopsis Thaliana Complexed With Plp-Glu: An
           External Aldimine Mimic
 pdb|3EI6|A Chain A, Crystal Structure Of Ll-Diaminopimelate Aminotransferase
           From Arabidopsis Thaliana Complexed With Plp-Dap: An
           External Aldimine Mimic
 pdb|3EI6|B Chain B, Crystal Structure Of Ll-Diaminopimelate Aminotransferase
           From Arabidopsis Thaliana Complexed With Plp-Dap: An
           External Aldimine Mimic
 pdb|3EI7|A Chain A, Crystal Structure Of Apo-Ll-Diaminopimelate
           Aminotransferase From Arabidopsis Thaliana (No Plp)
 pdb|3EI7|B Chain B, Crystal Structure Of Apo-Ll-Diaminopimelate
           Aminotransferase From Arabidopsis Thaliana (No Plp)
          Length = 432

 Score = 31.6 bits (70), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 27/74 (36%), Positives = 36/74 (48%), Gaps = 6/74 (8%)

Query: 149 NPRLRFLEANAEELPIESDSYSAYTIAFGIR-NVTRIDKAL--SEAYRVLKPGGRFLCLE 205
           NPR  F    AEE+ +E+ S+S Y    G+R   T I K L  S+ + V K   R +C  
Sbjct: 248 NPRSIFEIPGAEEVAMETASFSKYAGFTGVRLGWTVIPKKLLYSDGFPVAKDFNRIICTC 307

Query: 206 FSHEEFKSMIESAG 219
           F+     S I  AG
Sbjct: 308 FNG---ASNISQAG 318


>pdb|3EIA|A Chain A, Crystal Structure Of K270q Variant Of Ll-Diaminopimelate
           Aminotransferase From Arabidopsis Thaliana Complexed
           With L-Glu: External Aldimine Form
 pdb|3EIA|B Chain B, Crystal Structure Of K270q Variant Of Ll-Diaminopimelate
           Aminotransferase From Arabidopsis Thaliana Complexed
           With L-Glu: External Aldimine Form
          Length = 432

 Score = 31.6 bits (70), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 27/74 (36%), Positives = 36/74 (48%), Gaps = 6/74 (8%)

Query: 149 NPRLRFLEANAEELPIESDSYSAYTIAFGIR-NVTRIDKAL--SEAYRVLKPGGRFLCLE 205
           NPR  F    AEE+ +E+ S+S Y    G+R   T I K L  S+ + V K   R +C  
Sbjct: 248 NPRSIFEIPGAEEVAMETASFSQYAGFTGVRLGWTVIPKKLLYSDGFPVAKDFNRIICTC 307

Query: 206 FSHEEFKSMIESAG 219
           F+     S I  AG
Sbjct: 308 FNG---ASNISQAG 318


>pdb|2P8J|A Chain A, Crystal Structure Of S-Adenosylmethionine-Dependent
           Methyltransferase (Np_349143.1) From Clostridium
           Acetobutylicum At 2.00 A Resolution
 pdb|2P8J|B Chain B, Crystal Structure Of S-Adenosylmethionine-Dependent
           Methyltransferase (Np_349143.1) From Clostridium
           Acetobutylicum At 2.00 A Resolution
          Length = 209

 Score = 31.6 bits (70), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 6/86 (6%)

Query: 125 DSYSAYTIAFGIRNVTRIDKIDIPNP-RLRFLEANAEELPIESDSYS---AYTIAFGIRN 180
           D Y  Y I      + + +     N  +L   + +  +LP + +S S   +Y   F  R 
Sbjct: 45  DGYKTYGIEISDLQLKKAENFSRENNFKLNISKGDIRKLPFKDESXSFVYSYGTIFHXRK 104

Query: 181 VTRIDKALSEAYRVLKPGGRFLCLEF 206
              + +A+ E  RVLKPGG   C+ F
Sbjct: 105 -NDVKEAIDEIKRVLKPGG-LACINF 128


>pdb|3EI8|A Chain A, Crystal Structure Of K270n Variant Of Ll-Diaminopimelate
           Aminotransferase From Arabidopsis Thaliana Complexed
           With Ll-Dap: External Aldimine Form
 pdb|3EI8|B Chain B, Crystal Structure Of K270n Variant Of Ll-Diaminopimelate
           Aminotransferase From Arabidopsis Thaliana Complexed
           With Ll-Dap: External Aldimine Form
 pdb|3EI9|A Chain A, Crystal Structure Of K270n Variant Of Ll-diaminopimelate
           Aminotransferase From Arabidopsis Thaliana Complexed
           With L-glu: External Aldimine Form
 pdb|3EI9|B Chain B, Crystal Structure Of K270n Variant Of Ll-diaminopimelate
           Aminotransferase From Arabidopsis Thaliana Complexed
           With L-glu: External Aldimine Form
 pdb|3EIB|A Chain A, Crystal Structure Of K270n Variant Of Ll-Diaminopimelate
           Aminotransferase From Arabidopsis Thaliana
 pdb|3EIB|B Chain B, Crystal Structure Of K270n Variant Of Ll-Diaminopimelate
           Aminotransferase From Arabidopsis Thaliana
          Length = 432

 Score = 31.2 bits (69), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 27/74 (36%), Positives = 36/74 (48%), Gaps = 6/74 (8%)

Query: 149 NPRLRFLEANAEELPIESDSYSAYTIAFGIR-NVTRIDKAL--SEAYRVLKPGGRFLCLE 205
           NPR  F    AEE+ +E+ S+S Y    G+R   T I K L  S+ + V K   R +C  
Sbjct: 248 NPRSIFEIPGAEEVAMETASFSNYAGFTGVRLGWTVIPKKLLYSDGFPVAKDFNRIICTC 307

Query: 206 FSHEEFKSMIESAG 219
           F+     S I  AG
Sbjct: 308 FNG---ASNISQAG 318


>pdb|2GS9|A Chain A, Crystal Structure Of Tt1324 From Thermus Thermophilis Hb8
 pdb|2GS9|B Chain B, Crystal Structure Of Tt1324 From Thermus Thermophilis Hb8
          Length = 211

 Score = 31.2 bits (69), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 16/54 (29%), Positives = 27/54 (50%)

Query: 150 PRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLC 203
           P   ++ A  E LP   +S+    +   +  V  +++ L EA RVL+PGG  + 
Sbjct: 77  PEATWVRAWGEALPFPGESFDVVLLFTTLEFVEDVERVLLEARRVLRPGGALVV 130


>pdb|2Z20|A Chain A, Crystal Structure Of Ll-diaminopimelate Aminotransferase
           From Arabidopsis Thaliana
 pdb|2Z20|B Chain B, Crystal Structure Of Ll-diaminopimelate Aminotransferase
           From Arabidopsis Thaliana
          Length = 432

 Score = 30.8 bits (68), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 27/74 (36%), Positives = 35/74 (47%), Gaps = 6/74 (8%)

Query: 149 NPRLRFLEANAEELPIESDSYSAYTIAFGIR-NVTRIDKAL--SEAYRVLKPGGRFLCLE 205
           NPR  F    AEE+  E+ S+S Y    G+R   T I K L  S+ + V K   R +C  
Sbjct: 248 NPRSIFEIPGAEEVAXETASFSKYAGFTGVRLGWTVIPKKLLYSDGFPVAKDFNRIICTC 307

Query: 206 FSHEEFKSMIESAG 219
           F+     S I  AG
Sbjct: 308 FNG---ASNISQAG 318


>pdb|1Z90|A Chain A, X-Ray Structure Of Gene Product From Arabidopsis Thaliana
           At3g03250, A Putative Udp-Glucose Pyrophosphorylase
 pdb|1Z90|B Chain B, X-Ray Structure Of Gene Product From Arabidopsis Thaliana
           At3g03250, A Putative Udp-Glucose Pyrophosphorylase
 pdb|2Q4J|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
           Gene Product From Arabidopsis Thaliana At3g03250, A
           Putative Udp-Glucose Pyrophosphorylase
 pdb|2Q4J|B Chain B, Ensemble Refinement Of The Protein Crystal Structure Of
           Gene Product From Arabidopsis Thaliana At3g03250, A
           Putative Udp-Glucose Pyrophosphorylase
          Length = 469

 Score = 27.7 bits (60), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 3/51 (5%)

Query: 95  SIRQFPNQIDIPNPRLRFL--EANAEELPIESDSYSAYTIAFGIRNVTRID 143
           +IR F N I +  PR RFL  +A+++ L ++SD Y+     F  RN  R +
Sbjct: 339 AIRFFDNAIGVNVPRSRFLPVKASSDLLLVQSDLYTLVD-GFVTRNKARTN 388


>pdb|2ICX|A Chain A, Crystal Structure Of A Putative Udp-Glucose
           Pyrophosphorylase From Arabidopsis Thaliana With Bound
           Utp
 pdb|2ICX|B Chain B, Crystal Structure Of A Putative Udp-Glucose
           Pyrophosphorylase From Arabidopsis Thaliana With Bound
           Utp
 pdb|2ICY|A Chain A, Crystal Structure Of A Putative Udp-Glucose
           Pyrophosphorylase From Arabidopsis Thaliana With Bound
           Udp- Glucose
 pdb|2ICY|B Chain B, Crystal Structure Of A Putative Udp-Glucose
           Pyrophosphorylase From Arabidopsis Thaliana With Bound
           Udp- Glucose
          Length = 469

 Score = 27.7 bits (60), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 3/51 (5%)

Query: 95  SIRQFPNQIDIPNPRLRFL--EANAEELPIESDSYSAYTIAFGIRNVTRID 143
           +IR F N I +  PR RFL  +A+++ L ++SD Y+     F  RN  R +
Sbjct: 339 AIRFFDNAIGVNVPRSRFLPVKASSDLLLVQSDLYTLVD-GFVTRNKARTN 388


>pdb|2GPT|A Chain A, Crystal Structure Of Arabidopsis Dehydroquinate
           Dehydratase- Shikimate Dehydrogenase In Complex With
           Tartrate And Shikimate
          Length = 523

 Score = 27.7 bits (60), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 15/49 (30%), Positives = 22/49 (44%)

Query: 143 DKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEA 191
           D + + N     ++ N EE PI  D+   Y + F      RI + L EA
Sbjct: 424 DGMVLANTTSMGMQPNVEETPISKDALKHYALVFDAVYTPRITRLLREA 472


>pdb|2O7Q|A Chain A, Crystal Structure Of The A. Thaliana
           Dhq-Dehydroshikimate-Sdh- Shikimate-Nadp(H)
 pdb|2O7S|A Chain A, Crystal Structure Of The A. Thaliana
           Dhq-dehydroshikimate-sdh- Shikimate-nadp(h)
          Length = 523

 Score = 27.7 bits (60), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 15/49 (30%), Positives = 22/49 (44%)

Query: 143 DKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEA 191
           D + + N     ++ N EE PI  D+   Y + F      RI + L EA
Sbjct: 424 DGMVLANTTSMGMQPNVEETPISKDALKHYALVFDAVYTPRITRLLREA 472


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.140    0.413 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,190,989
Number of Sequences: 62578
Number of extensions: 289707
Number of successful extensions: 724
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 700
Number of HSP's gapped (non-prelim): 36
length of query: 241
length of database: 14,973,337
effective HSP length: 96
effective length of query: 145
effective length of database: 8,965,849
effective search space: 1300048105
effective search space used: 1300048105
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)