Query psy1420
Match_columns 241
No_of_seqs 133 out of 1409
Neff 7.3
Searched_HMMs 46136
Date Fri Aug 16 22:00:02 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1420.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1420hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2226 UbiE Methylase involve 100.0 7.1E-32 1.5E-36 233.0 17.1 182 3-241 11-238 (238)
2 KOG1540|consensus 100.0 1E-30 2.2E-35 224.3 17.1 189 4-241 61-296 (296)
3 PF01209 Ubie_methyltran: ubiE 100.0 8E-32 1.7E-36 233.2 8.7 182 3-240 7-233 (233)
4 PLN02233 ubiquinone biosynthes 99.9 1.2E-24 2.7E-29 191.2 18.8 185 3-240 33-261 (261)
5 TIGR02752 MenG_heptapren 2-hep 99.9 1E-23 2.2E-28 180.9 18.1 182 3-240 5-231 (231)
6 PRK05785 hypothetical protein; 99.9 1.4E-22 3E-27 174.6 14.0 169 3-240 9-224 (226)
7 PRK00216 ubiE ubiquinone/menaq 99.9 3.7E-20 8E-25 158.3 18.3 184 3-241 11-239 (239)
8 TIGR01934 MenG_MenH_UbiE ubiqu 99.8 4.2E-19 9.1E-24 150.2 17.9 177 6-240 2-223 (223)
9 PLN02244 tocopherol O-methyltr 99.8 4.8E-19 1E-23 161.3 13.9 174 2-232 58-283 (340)
10 PRK10258 biotin biosynthesis p 99.8 2.5E-17 5.4E-22 143.2 15.4 151 2-221 6-181 (251)
11 PRK11036 putative S-adenosyl-L 99.8 1.8E-17 3.8E-22 144.9 14.4 161 7-226 4-206 (255)
12 PLN02396 hexaprenyldihydroxybe 99.8 3.3E-17 7.3E-22 148.0 16.1 129 42-228 130-290 (322)
13 KOG4300|consensus 99.7 8.9E-17 1.9E-21 134.8 14.9 143 37-237 70-242 (252)
14 PTZ00098 phosphoethanolamine N 99.7 3.3E-16 7.2E-21 137.8 15.3 138 32-229 41-204 (263)
15 PLN02490 MPBQ/MSBQ methyltrans 99.7 7.3E-16 1.6E-20 140.1 15.2 160 8-229 79-258 (340)
16 PLN02232 ubiquinone biosynthes 99.7 7.4E-16 1.6E-20 126.0 11.7 115 101-240 1-160 (160)
17 PLN02336 phosphoethanolamine N 99.7 1.5E-15 3.3E-20 143.6 15.5 139 32-229 255-416 (475)
18 PRK15068 tRNA mo(5)U34 methylt 99.7 2.2E-15 4.8E-20 136.3 14.4 139 33-229 112-276 (322)
19 PRK14103 trans-aconitate 2-met 99.7 2E-15 4.3E-20 131.8 13.6 129 33-226 19-183 (255)
20 PF13489 Methyltransf_23: Meth 99.7 5.5E-16 1.2E-20 124.4 9.3 124 32-224 10-160 (161)
21 PF08241 Methyltransf_11: Meth 99.6 8.5E-16 1.8E-20 112.4 8.7 95 48-203 1-95 (95)
22 COG2227 UbiG 2-polyprenyl-3-me 99.6 5.5E-16 1.2E-20 133.1 8.4 128 42-229 58-217 (243)
23 PRK11873 arsM arsenite S-adeno 99.6 5.1E-15 1.1E-19 130.3 14.6 131 41-227 75-230 (272)
24 TIGR02021 BchM-ChlM magnesium 99.6 1E-14 2.2E-19 124.4 15.4 170 2-232 2-211 (219)
25 PRK08317 hypothetical protein; 99.6 1.5E-14 3.4E-19 123.0 16.2 142 30-228 6-177 (241)
26 TIGR00452 methyltransferase, p 99.6 6.8E-15 1.5E-19 132.6 14.4 139 33-229 111-275 (314)
27 PF02353 CMAS: Mycolic acid cy 99.6 1.1E-14 2.3E-19 129.0 13.2 137 32-228 51-218 (273)
28 PRK11207 tellurite resistance 99.6 1.4E-14 2.9E-19 122.3 13.2 131 34-226 21-169 (197)
29 PRK15451 tRNA cmo(5)U34 methyl 99.6 1E-14 2.2E-19 127.1 12.6 108 42-205 55-164 (247)
30 PF13847 Methyltransf_31: Meth 99.6 8.5E-15 1.9E-19 118.0 11.1 109 42-207 2-112 (152)
31 TIGR02072 BioC biotin biosynth 99.6 2.3E-14 5.1E-19 122.1 13.9 123 43-227 34-176 (240)
32 KOG1270|consensus 99.6 7.9E-15 1.7E-19 127.1 10.3 141 30-227 69-249 (282)
33 smart00828 PKS_MT Methyltransf 99.6 2.6E-14 5.6E-19 122.0 13.0 129 46-231 2-148 (224)
34 PRK00107 gidB 16S rRNA methylt 99.6 7.7E-14 1.7E-18 117.1 14.9 126 42-229 44-171 (187)
35 PF12847 Methyltransf_18: Meth 99.6 2.1E-14 4.6E-19 109.0 9.2 106 43-205 1-111 (112)
36 TIGR00740 methyltransferase, p 99.5 1.3E-14 2.8E-19 125.5 8.4 108 42-205 52-161 (239)
37 TIGR00477 tehB tellurite resis 99.5 7.5E-14 1.6E-18 117.6 12.6 129 35-226 22-168 (195)
38 PRK01683 trans-aconitate 2-met 99.5 1.2E-13 2.7E-18 120.4 13.9 111 31-204 19-129 (258)
39 PRK05134 bifunctional 3-demeth 99.5 4.9E-13 1.1E-17 114.8 16.3 166 4-229 7-207 (233)
40 COG2230 Cfa Cyclopropane fatty 99.5 1E-13 2.2E-18 122.4 11.9 137 32-228 61-224 (283)
41 PRK06202 hypothetical protein; 99.5 3.3E-13 7.2E-18 116.2 13.7 141 28-227 45-222 (232)
42 TIGR02716 C20_methyl_CrtF C-20 99.5 4.6E-13 1E-17 120.0 14.7 135 32-225 138-304 (306)
43 TIGR00537 hemK_rel_arch HemK-r 99.5 1.8E-12 3.9E-17 107.3 14.4 128 40-229 16-167 (179)
44 TIGR01983 UbiG ubiquinone bios 99.5 2.9E-12 6.3E-17 109.1 15.7 127 43-228 45-204 (224)
45 PLN02585 magnesium protoporphy 99.5 6.6E-13 1.4E-17 119.8 12.1 166 3-229 91-301 (315)
46 PRK07580 Mg-protoporphyrin IX 99.5 1.9E-12 4.1E-17 110.6 14.3 129 42-231 62-218 (230)
47 PF08003 Methyltransf_9: Prote 99.4 1.3E-12 2.8E-17 116.0 13.3 139 33-229 105-269 (315)
48 TIGR00138 gidB 16S rRNA methyl 99.4 3.6E-12 7.8E-17 106.4 15.2 127 43-231 42-173 (181)
49 PRK14968 putative methyltransf 99.4 4.1E-12 8.8E-17 104.9 15.1 142 41-240 21-188 (188)
50 PRK12335 tellurite resistance 99.4 1.2E-12 2.6E-17 116.6 12.6 121 43-226 120-258 (287)
51 PRK00121 trmB tRNA (guanine-N( 99.4 1.1E-12 2.4E-17 111.1 11.5 131 35-223 33-177 (202)
52 PLN02336 phosphoethanolamine N 99.4 1.5E-12 3.2E-17 123.2 13.5 136 32-228 26-183 (475)
53 PRK08287 cobalt-precorrin-6Y C 99.4 4.7E-12 1E-16 105.6 14.9 138 29-228 17-157 (187)
54 PRK04266 fibrillarin; Provisio 99.4 5.2E-12 1.1E-16 109.0 15.1 137 38-239 67-224 (226)
55 PF08242 Methyltransf_12: Meth 99.4 7.5E-14 1.6E-18 104.3 2.5 97 48-201 1-99 (99)
56 PRK11705 cyclopropane fatty ac 99.4 3.9E-12 8.6E-17 117.7 13.9 131 33-228 157-313 (383)
57 smart00138 MeTrc Methyltransfe 99.4 1.7E-12 3.7E-17 114.4 10.8 137 42-205 98-242 (264)
58 PRK00377 cbiT cobalt-precorrin 99.4 1.2E-11 2.6E-16 104.3 14.9 134 31-222 28-165 (198)
59 COG2242 CobL Precorrin-6B meth 99.4 2.3E-11 5E-16 101.2 15.9 139 28-227 19-161 (187)
60 PRK06922 hypothetical protein; 99.4 3.3E-12 7.2E-17 123.7 12.0 110 39-206 414-538 (677)
61 TIGR02469 CbiT precorrin-6Y C5 99.4 1.1E-11 2.4E-16 95.1 12.0 116 30-205 6-122 (124)
62 KOG2361|consensus 99.4 5.7E-12 1.2E-16 108.2 11.2 127 45-227 73-237 (264)
63 PF05401 NodS: Nodulation prot 99.4 2.7E-11 5.8E-16 101.7 14.7 124 38-224 38-176 (201)
64 TIGR01177 conserved hypothetic 99.4 6.3E-12 1.4E-16 114.0 11.8 136 32-227 171-315 (329)
65 PRK13944 protein-L-isoaspartat 99.3 8.7E-12 1.9E-16 105.8 11.5 114 31-205 60-173 (205)
66 PF13649 Methyltransf_25: Meth 99.3 8.5E-13 1.8E-17 99.2 4.7 98 47-199 1-101 (101)
67 PRK11088 rrmA 23S rRNA methylt 99.3 1.6E-11 3.6E-16 108.3 13.1 101 42-208 84-184 (272)
68 PF03848 TehB: Tellurite resis 99.3 2.7E-11 5.8E-16 101.9 12.8 127 37-226 24-168 (192)
69 PRK13942 protein-L-isoaspartat 99.3 2E-11 4.4E-16 104.2 10.9 113 30-204 63-175 (212)
70 TIGR03587 Pse_Me-ase pseudamin 99.3 2.6E-11 5.6E-16 103.1 11.4 100 42-206 42-143 (204)
71 TIGR00091 tRNA (guanine-N(7)-) 99.3 2.3E-11 5.1E-16 102.2 10.7 125 43-224 16-155 (194)
72 PRK00517 prmA ribosomal protei 99.3 6.7E-11 1.4E-15 103.3 13.7 120 42-229 118-240 (250)
73 PF05175 MTS: Methyltransferas 99.3 3.4E-11 7.4E-16 99.2 10.2 125 34-216 22-151 (170)
74 TIGR03534 RF_mod_PrmC protein- 99.3 1.3E-10 2.9E-15 100.3 14.3 136 33-227 78-241 (251)
75 TIGR00080 pimt protein-L-isoas 99.3 5E-11 1.1E-15 101.7 11.5 112 31-204 65-176 (215)
76 PRK14967 putative methyltransf 99.3 1.6E-10 3.5E-15 99.1 14.4 131 38-228 31-185 (223)
77 PLN03075 nicotianamine synthas 99.3 1E-10 2.2E-15 104.4 13.4 145 41-240 121-274 (296)
78 PRK11188 rrmJ 23S rRNA methylt 99.2 3.3E-11 7.1E-16 102.8 9.5 119 41-226 49-188 (209)
79 TIGR00406 prmA ribosomal prote 99.2 1E-10 2.2E-15 104.2 13.0 124 42-228 158-284 (288)
80 TIGR02081 metW methionine bios 99.2 1.1E-10 2.3E-15 98.0 12.3 121 43-228 13-168 (194)
81 PTZ00146 fibrillarin; Provisio 99.2 2.6E-10 5.6E-15 101.5 14.6 131 39-229 128-273 (293)
82 TIGR03840 TMPT_Se_Te thiopurin 99.2 1.8E-10 4E-15 98.5 13.2 138 42-227 33-187 (213)
83 TIGR03533 L3_gln_methyl protei 99.2 2.8E-10 6.1E-15 101.4 14.8 138 41-235 119-282 (284)
84 COG4976 Predicted methyltransf 99.2 2.4E-11 5.2E-16 103.8 7.2 161 4-229 86-267 (287)
85 KOG1271|consensus 99.2 2E-10 4.2E-15 95.2 12.0 127 46-228 70-206 (227)
86 TIGR03438 probable methyltrans 99.2 8.7E-10 1.9E-14 98.9 17.2 140 5-203 27-175 (301)
87 PRK07402 precorrin-6B methylas 99.2 3.3E-10 7.2E-15 95.1 13.6 136 29-225 26-168 (196)
88 PF07021 MetW: Methionine bios 99.2 1E-10 2.2E-15 97.9 10.2 122 42-231 12-171 (193)
89 PRK09328 N5-glutamine S-adenos 99.2 9.5E-10 2.1E-14 96.5 16.0 148 33-238 98-273 (275)
90 PRK11805 N5-glutamine S-adenos 99.2 5.8E-10 1.3E-14 100.4 14.5 133 45-234 135-293 (307)
91 PRK09489 rsmC 16S ribosomal RN 99.2 4.5E-10 9.7E-15 102.6 13.8 126 32-217 185-315 (342)
92 TIGR00536 hemK_fam HemK family 99.2 1.1E-09 2.3E-14 97.4 15.1 138 45-239 116-281 (284)
93 PRK00312 pcm protein-L-isoaspa 99.2 3.9E-10 8.4E-15 95.8 11.6 110 31-205 66-175 (212)
94 COG4106 Tam Trans-aconitate me 99.2 1.5E-10 3.3E-15 98.1 8.8 111 32-205 19-129 (257)
95 PRK14121 tRNA (guanine-N(7)-)- 99.1 6.8E-10 1.5E-14 102.5 13.3 119 33-208 112-238 (390)
96 PRK13255 thiopurine S-methyltr 99.1 1.1E-09 2.3E-14 94.2 13.3 141 40-228 34-191 (218)
97 PF05891 Methyltransf_PK: AdoM 99.1 1.2E-09 2.5E-14 93.1 13.0 128 43-228 55-202 (218)
98 PRK15001 SAM-dependent 23S rib 99.1 1.6E-09 3.5E-14 100.0 14.6 130 32-217 217-352 (378)
99 PF08704 GCD14: tRNA methyltra 99.1 1.2E-09 2.6E-14 95.4 12.8 136 32-227 29-171 (247)
100 PRK14966 unknown domain/N5-glu 99.1 2.9E-09 6.3E-14 99.1 16.1 140 43-240 251-418 (423)
101 KOG1541|consensus 99.1 1E-09 2.2E-14 93.5 11.6 147 9-221 16-181 (270)
102 COG2264 PrmA Ribosomal protein 99.1 2.4E-09 5.1E-14 95.6 14.3 129 42-231 161-292 (300)
103 PF13659 Methyltransf_26: Meth 99.1 2.1E-10 4.6E-15 87.7 6.5 105 44-205 1-115 (117)
104 PRK14901 16S rRNA methyltransf 99.1 1.7E-09 3.7E-14 101.6 13.9 134 34-223 243-409 (434)
105 PF05219 DREV: DREV methyltran 99.1 1.2E-09 2.5E-14 95.3 11.5 119 43-229 94-242 (265)
106 PF01135 PCMT: Protein-L-isoas 99.1 2.8E-10 6.1E-15 97.2 7.5 113 30-204 59-171 (209)
107 COG4123 Predicted O-methyltran 99.1 2.9E-09 6.2E-14 92.8 12.9 135 38-228 39-195 (248)
108 COG2519 GCD14 tRNA(1-methylade 99.0 2.6E-09 5.6E-14 92.8 12.0 131 33-224 84-217 (256)
109 PF06325 PrmA: Ribosomal prote 99.0 3E-09 6.6E-14 95.2 12.8 123 42-229 160-285 (295)
110 PF05148 Methyltransf_8: Hypot 99.0 9.9E-10 2.1E-14 93.0 9.0 75 153-228 107-186 (219)
111 PRK13943 protein-L-isoaspartat 99.0 1.5E-09 3.2E-14 98.4 10.1 113 30-204 67-179 (322)
112 cd02440 AdoMet_MTases S-adenos 99.0 2.7E-09 5.8E-14 77.2 9.4 101 46-204 1-103 (107)
113 COG2518 Pcm Protein-L-isoaspar 99.0 2.4E-09 5.2E-14 90.8 10.4 110 31-205 60-169 (209)
114 KOG3010|consensus 99.0 1.5E-09 3.2E-14 93.5 9.1 103 46-207 36-139 (261)
115 PRK14904 16S rRNA methyltransf 99.0 5.6E-09 1.2E-13 98.5 12.6 132 35-223 242-402 (445)
116 TIGR00563 rsmB ribosomal RNA s 99.0 6.7E-09 1.5E-13 97.4 13.0 133 33-221 228-391 (426)
117 TIGR00438 rrmJ cell division p 99.0 3.9E-09 8.5E-14 88.1 10.2 122 38-226 27-169 (188)
118 PF00891 Methyltransf_2: O-met 99.0 5.8E-09 1.3E-13 90.2 11.3 108 33-207 90-201 (241)
119 COG2813 RsmC 16S RNA G1207 met 99.0 1.5E-08 3.2E-13 90.2 13.9 134 32-225 147-285 (300)
120 PRK14903 16S rRNA methyltransf 99.0 8E-09 1.7E-13 97.1 12.3 135 35-225 229-393 (431)
121 PF05724 TPMT: Thiopurine S-me 98.9 5.3E-09 1.1E-13 89.9 9.9 143 38-228 32-191 (218)
122 PRK10901 16S rRNA methyltransf 98.9 1.1E-08 2.4E-13 96.0 12.8 133 34-224 235-398 (427)
123 PF03291 Pox_MCEL: mRNA cappin 98.9 1.7E-08 3.7E-13 91.8 13.5 127 43-217 62-198 (331)
124 PF12147 Methyltransf_20: Puta 98.9 3.7E-08 7.9E-13 87.2 14.9 146 41-240 133-311 (311)
125 PRK01544 bifunctional N5-gluta 98.9 1.5E-08 3.3E-13 97.0 13.5 126 43-226 138-292 (506)
126 KOG3045|consensus 98.9 1.9E-08 4.1E-13 87.5 12.5 75 152-227 212-291 (325)
127 PRK14902 16S rRNA methyltransf 98.9 2.2E-08 4.8E-13 94.4 13.6 137 34-226 241-407 (444)
128 TIGR03704 PrmC_rel_meth putati 98.9 5.2E-08 1.1E-12 85.3 14.5 124 44-227 87-240 (251)
129 COG2890 HemK Methylase of poly 98.9 5.6E-08 1.2E-12 86.5 14.6 136 46-240 113-276 (280)
130 PF07942 N2227: N2227-like pro 98.9 8.1E-08 1.8E-12 84.8 15.3 190 5-227 14-242 (270)
131 PF01739 CheR: CheR methyltran 98.9 4.6E-09 1E-13 88.8 7.2 138 42-205 30-175 (196)
132 TIGR00446 nop2p NOL1/NOP2/sun 98.9 2.2E-08 4.8E-13 88.2 11.5 126 37-218 65-218 (264)
133 PF06080 DUF938: Protein of un 98.8 3.8E-08 8.3E-13 83.4 11.7 140 33-229 16-194 (204)
134 PRK01581 speE spermidine synth 98.8 4.1E-08 8.9E-13 89.9 12.6 135 44-228 151-298 (374)
135 PHA03411 putative methyltransf 98.8 2.2E-08 4.7E-13 88.6 10.1 118 42-222 63-209 (279)
136 PRK11783 rlmL 23S rRNA m(2)G24 98.8 3.3E-08 7.2E-13 98.2 12.3 130 43-228 538-681 (702)
137 PRK13256 thiopurine S-methyltr 98.8 2.7E-08 6E-13 85.8 10.2 138 39-224 39-194 (226)
138 KOG2940|consensus 98.8 9.7E-09 2.1E-13 88.1 7.1 123 44-226 73-226 (325)
139 PRK13168 rumA 23S rRNA m(5)U19 98.8 4.7E-08 1E-12 92.2 12.4 140 30-233 284-430 (443)
140 COG2521 Predicted archaeal met 98.8 1.1E-08 2.3E-13 88.0 6.8 140 39-235 130-285 (287)
141 PRK03612 spermidine synthase; 98.8 3.8E-08 8.3E-13 94.6 11.0 130 42-221 296-438 (521)
142 PRK04457 spermidine synthase; 98.8 1.5E-07 3.2E-12 83.0 13.8 111 42-208 65-180 (262)
143 PRK00811 spermidine synthase; 98.8 3.6E-08 7.9E-13 87.8 9.4 130 43-226 76-218 (283)
144 smart00650 rADc Ribosomal RNA 98.8 7E-08 1.5E-12 79.2 10.3 108 33-204 3-112 (169)
145 PLN02781 Probable caffeoyl-CoA 98.7 4.1E-08 8.8E-13 85.2 8.8 104 42-203 67-176 (234)
146 PF02390 Methyltransf_4: Putat 98.7 6.3E-08 1.4E-12 81.8 9.2 121 46-223 20-156 (195)
147 PRK10611 chemotaxis methyltran 98.7 1.8E-08 4E-13 89.8 5.8 139 43-205 115-262 (287)
148 PRK15128 23S rRNA m(5)C1962 me 98.7 2.2E-07 4.8E-12 86.5 13.2 124 43-222 220-364 (396)
149 COG1352 CheR Methylase of chem 98.7 1.5E-07 3.2E-12 83.2 10.0 141 43-205 96-241 (268)
150 TIGR00417 speE spermidine synt 98.7 4E-07 8.6E-12 80.5 12.7 129 44-226 73-213 (270)
151 KOG1975|consensus 98.6 1.7E-07 3.6E-12 84.0 9.7 133 33-218 108-250 (389)
152 PRK03522 rumB 23S rRNA methylu 98.6 2.8E-07 6.1E-12 83.2 11.4 133 34-231 164-300 (315)
153 PF01170 UPF0020: Putative RNA 98.6 1.7E-07 3.7E-12 78.0 8.8 150 30-228 15-172 (179)
154 TIGR00479 rumA 23S rRNA (uraci 98.6 4.3E-07 9.4E-12 85.2 11.9 137 32-231 281-424 (431)
155 PF01234 NNMT_PNMT_TEMT: NNMT/ 98.6 5E-07 1.1E-11 79.3 11.2 126 96-227 78-239 (256)
156 PLN02366 spermidine synthase 98.5 1.5E-06 3.2E-11 78.5 13.1 131 42-225 90-233 (308)
157 PF11968 DUF3321: Putative met 98.5 1.4E-06 3E-11 74.4 12.1 76 153-228 86-182 (219)
158 PF05185 PRMT5: PRMT5 arginine 98.5 2.3E-07 5E-12 87.6 7.8 140 2-202 149-294 (448)
159 KOG2899|consensus 98.5 7.6E-07 1.6E-11 77.0 9.9 129 42-203 57-207 (288)
160 PLN02672 methionine S-methyltr 98.5 1E-06 2.3E-11 90.5 12.5 142 44-227 119-303 (1082)
161 COG1041 Predicted DNA modifica 98.5 1.3E-06 2.9E-11 79.3 11.5 138 30-228 184-331 (347)
162 PLN02476 O-methyltransferase 98.5 7.4E-07 1.6E-11 79.2 9.6 105 41-203 116-226 (278)
163 PF01596 Methyltransf_3: O-met 98.5 2.4E-07 5.1E-12 78.9 6.2 105 43-205 45-155 (205)
164 COG4122 Predicted O-methyltran 98.5 5.4E-07 1.2E-11 77.3 8.2 107 39-203 55-164 (219)
165 PF10294 Methyltransf_16: Puta 98.5 6E-07 1.3E-11 74.3 8.0 109 41-205 43-156 (173)
166 KOG3178|consensus 98.5 2.4E-06 5.3E-11 77.3 12.3 118 45-228 179-331 (342)
167 TIGR02085 meth_trns_rumB 23S r 98.4 2.5E-06 5.4E-11 78.9 12.3 131 36-231 226-360 (374)
168 PRK10909 rsmD 16S rRNA m(2)G96 98.4 2.1E-06 4.5E-11 72.8 10.6 136 31-227 40-179 (199)
169 PF02527 GidB: rRNA small subu 98.4 5E-06 1.1E-10 69.7 12.2 121 46-228 51-176 (184)
170 KOG3191|consensus 98.4 8E-06 1.7E-10 67.9 12.9 127 44-228 44-194 (209)
171 COG2263 Predicted RNA methylas 98.4 6E-06 1.3E-10 69.1 12.1 133 40-237 42-178 (198)
172 COG0220 Predicted S-adenosylme 98.4 3.1E-06 6.8E-11 73.1 10.9 107 45-208 50-167 (227)
173 KOG1661|consensus 98.4 1.8E-06 3.8E-11 73.3 8.1 113 41-204 80-192 (237)
174 PHA03412 putative methyltransf 98.3 1.8E-06 3.9E-11 74.9 7.7 118 43-221 49-196 (241)
175 COG1092 Predicted SAM-dependen 98.3 6.8E-06 1.5E-10 76.3 12.0 127 44-226 218-365 (393)
176 KOG1499|consensus 98.3 2E-06 4.3E-11 77.9 8.2 112 33-202 50-164 (346)
177 PLN02589 caffeoyl-CoA O-methyl 98.3 2E-06 4.3E-11 75.3 6.8 104 42-203 78-188 (247)
178 PRK00536 speE spermidine synth 98.3 8.7E-06 1.9E-10 71.8 10.5 123 42-228 71-200 (262)
179 COG0357 GidB Predicted S-adeno 98.2 2.5E-05 5.4E-10 67.0 12.7 126 44-231 68-199 (215)
180 TIGR00478 tly hemolysin TlyA f 98.2 1.2E-05 2.7E-10 69.5 11.0 130 33-228 64-218 (228)
181 PRK11933 yebU rRNA (cytosine-C 98.2 1.2E-05 2.6E-10 76.4 11.8 124 40-219 110-262 (470)
182 PRK00274 ksgA 16S ribosomal RN 98.2 3.8E-06 8.2E-11 74.4 7.7 86 30-177 29-114 (272)
183 COG3963 Phospholipid N-methylt 98.2 9.8E-06 2.1E-10 66.6 9.2 147 31-240 36-192 (194)
184 PRK11727 23S rRNA mA1618 methy 98.2 3.3E-05 7.2E-10 70.1 13.5 140 43-238 114-304 (321)
185 PF09243 Rsm22: Mitochondrial 98.2 1.9E-05 4.2E-10 70.0 11.8 133 33-223 23-164 (274)
186 PRK14896 ksgA 16S ribosomal RN 98.2 6E-06 1.3E-10 72.5 8.4 88 29-179 15-102 (258)
187 KOG2915|consensus 98.2 3.6E-05 7.7E-10 67.8 13.0 135 33-227 95-235 (314)
188 KOG3987|consensus 98.2 1.7E-06 3.6E-11 73.4 4.5 118 43-229 112-262 (288)
189 TIGR00755 ksgA dimethyladenosi 98.2 1.4E-05 3.1E-10 69.8 10.5 85 30-177 16-103 (253)
190 PTZ00338 dimethyladenosine tra 98.2 5.5E-06 1.2E-10 74.3 7.9 89 30-178 23-111 (294)
191 KOG2904|consensus 98.1 2E-05 4.2E-10 69.5 9.6 119 31-205 133-285 (328)
192 PRK01544 bifunctional N5-gluta 98.1 2E-05 4.4E-10 75.7 10.3 124 43-223 347-484 (506)
193 KOG1331|consensus 98.1 3.4E-06 7.3E-11 74.5 4.5 99 43-208 45-146 (293)
194 PF03141 Methyltransf_29: Puta 98.1 5.2E-06 1.1E-10 78.4 5.4 69 158-226 171-252 (506)
195 PF10672 Methyltrans_SAM: S-ad 98.1 1.3E-05 2.9E-10 71.5 7.7 142 28-228 111-265 (286)
196 COG0116 Predicted N6-adenine-s 98.0 0.00017 3.7E-09 66.5 13.9 149 31-223 179-362 (381)
197 PF01269 Fibrillarin: Fibrilla 98.0 0.00018 3.9E-09 61.8 13.0 131 39-229 69-214 (229)
198 PF02384 N6_Mtase: N-6 DNA Met 98.0 3.4E-05 7.5E-10 69.1 9.2 177 4-229 5-214 (311)
199 PRK05031 tRNA (uracil-5-)-meth 98.0 5E-05 1.1E-09 70.0 10.2 132 33-231 197-347 (362)
200 TIGR02143 trmA_only tRNA (urac 97.9 8.7E-05 1.9E-09 68.2 11.1 132 32-230 187-337 (353)
201 TIGR00095 RNA methyltransferas 97.9 9.4E-05 2E-09 62.1 9.8 117 30-204 35-158 (189)
202 COG4262 Predicted spermidine s 97.9 7.7E-05 1.7E-09 68.2 9.5 148 43-240 289-451 (508)
203 COG0421 SpeE Spermidine syntha 97.9 0.00013 2.9E-09 65.0 10.7 110 41-204 75-189 (282)
204 TIGR03439 methyl_EasF probable 97.9 0.00029 6.4E-09 63.9 12.9 120 32-204 67-196 (319)
205 PRK04338 N(2),N(2)-dimethylgua 97.9 5.2E-05 1.1E-09 70.4 8.0 101 43-204 57-157 (382)
206 KOG1269|consensus 97.8 3E-05 6.5E-10 71.4 5.8 109 42-207 109-217 (364)
207 PF02475 Met_10: Met-10+ like- 97.8 6.6E-05 1.4E-09 63.7 7.4 100 41-201 99-198 (200)
208 COG0500 SmtA SAM-dependent met 97.8 0.00028 6.1E-09 52.7 10.1 83 98-208 73-158 (257)
209 PF04816 DUF633: Family of unk 97.8 0.00039 8.4E-09 59.3 11.8 124 47-229 1-126 (205)
210 PLN02823 spermine synthase 97.8 9.7E-05 2.1E-09 67.5 8.4 109 43-204 103-219 (336)
211 COG0144 Sun tRNA and rRNA cyto 97.8 0.00058 1.3E-08 62.8 13.5 136 35-225 148-315 (355)
212 PF01564 Spermine_synth: Sperm 97.8 0.00013 2.9E-09 63.7 8.9 130 43-226 76-218 (246)
213 PF05958 tRNA_U5-meth_tr: tRNA 97.7 0.00044 9.4E-09 63.6 12.0 130 30-230 184-336 (352)
214 COG0293 FtsJ 23S rRNA methylas 97.7 0.00055 1.2E-08 58.2 11.4 119 42-227 44-183 (205)
215 COG2520 Predicted methyltransf 97.7 0.00075 1.6E-08 61.6 12.7 118 42-220 187-313 (341)
216 COG2265 TrmA SAM-dependent met 97.7 0.00051 1.1E-08 64.8 11.9 140 29-230 279-423 (432)
217 KOG1500|consensus 97.7 0.00018 3.9E-09 65.2 8.2 102 41-202 175-279 (517)
218 KOG2798|consensus 97.7 0.00081 1.8E-08 60.4 12.2 77 152-228 240-338 (369)
219 PF01209 Ubie_methyltran: ubiE 97.7 7.8E-06 1.7E-10 70.9 -0.6 90 42-144 144-233 (233)
220 PF08123 DOT1: Histone methyla 97.7 7.8E-05 1.7E-09 63.5 5.5 123 32-203 31-156 (205)
221 PRK00050 16S rRNA m(4)C1402 me 97.7 7.4E-05 1.6E-09 67.1 5.5 91 31-179 7-101 (296)
222 PF03602 Cons_hypoth95: Conser 97.6 5.2E-05 1.1E-09 63.4 4.2 140 30-228 27-174 (183)
223 KOG0820|consensus 97.6 0.00021 4.5E-09 63.0 7.9 84 32-175 47-130 (315)
224 COG4798 Predicted methyltransf 97.6 0.00023 5E-09 60.0 7.6 63 166-228 120-206 (238)
225 KOG3420|consensus 97.6 0.0001 2.3E-09 59.4 5.0 89 31-178 36-124 (185)
226 PF01728 FtsJ: FtsJ-like methy 97.6 8.6E-05 1.9E-09 61.3 4.8 60 167-227 90-163 (181)
227 PRK04148 hypothetical protein; 97.6 0.00068 1.5E-08 54.0 9.3 107 33-210 6-114 (134)
228 COG1889 NOP1 Fibrillarin-like 97.5 0.0033 7.2E-08 53.4 13.4 130 39-229 72-216 (231)
229 COG0030 KsgA Dimethyladenosine 97.5 0.00031 6.8E-09 61.8 7.4 86 30-176 17-103 (259)
230 PRK11783 rlmL 23S rRNA m(2)G24 97.5 0.0018 3.8E-08 64.8 13.5 101 98-228 257-366 (702)
231 KOG1663|consensus 97.5 0.00064 1.4E-08 58.6 8.6 103 43-204 73-182 (237)
232 COG2226 UbiE Methylase involve 97.5 3E-05 6.5E-10 67.5 0.2 90 42-144 147-237 (238)
233 PF01189 Nol1_Nop2_Fmu: NOL1/N 97.3 0.001 2.2E-08 59.3 8.7 133 36-224 78-245 (283)
234 PF00398 RrnaAD: Ribosomal RNA 97.3 0.0059 1.3E-07 53.6 13.3 105 29-197 16-123 (262)
235 COG1189 Predicted rRNA methyla 97.2 0.0062 1.3E-07 52.9 11.1 129 34-228 69-225 (245)
236 COG0742 N6-adenine-specific me 97.1 0.005 1.1E-07 51.7 9.5 140 29-227 27-174 (187)
237 PLN02668 indole-3-acetate carb 97.1 0.0053 1.2E-07 57.1 10.6 49 157-205 151-237 (386)
238 TIGR00308 TRM1 tRNA(guanine-26 97.1 0.0025 5.5E-08 59.1 8.5 101 44-204 45-146 (374)
239 PF06962 rRNA_methylase: Putat 97.0 0.0028 6.2E-08 50.8 7.4 105 99-229 1-127 (140)
240 TIGR02987 met_A_Alw26 type II 97.0 0.0089 1.9E-07 57.6 12.2 54 43-118 31-84 (524)
241 PF03059 NAS: Nicotianamine sy 97.0 0.004 8.8E-08 55.4 8.8 143 44-240 121-271 (276)
242 KOG1540|consensus 97.0 0.00031 6.7E-09 61.5 1.7 58 42-102 205-262 (296)
243 PRK11760 putative 23S rRNA C24 97.0 0.0075 1.6E-07 55.2 10.4 117 42-228 210-341 (357)
244 PF09445 Methyltransf_15: RNA 97.0 0.00055 1.2E-08 56.3 2.7 72 46-175 2-76 (163)
245 PF03492 Methyltransf_7: SAM d 96.9 0.0036 7.7E-08 57.2 7.8 54 155-208 94-186 (334)
246 KOG1122|consensus 96.8 0.012 2.5E-07 55.0 10.6 130 39-225 237-398 (460)
247 KOG3201|consensus 96.8 0.0013 2.9E-08 54.0 3.7 110 96-229 53-168 (201)
248 COG2384 Predicted SAM-dependen 96.8 0.016 3.4E-07 49.8 10.3 128 43-228 16-144 (226)
249 PF04672 Methyltransf_19: S-ad 96.8 0.012 2.7E-07 52.0 9.7 121 45-219 70-211 (267)
250 COG0275 Predicted S-adenosylme 96.7 0.037 8.1E-07 49.7 12.5 60 30-118 10-69 (314)
251 COG4627 Uncharacterized protei 96.6 0.0013 2.7E-08 53.7 2.4 55 151-205 30-86 (185)
252 COG3897 Predicted methyltransf 96.6 0.01 2.2E-07 50.2 7.7 105 42-208 78-182 (218)
253 KOG2352|consensus 96.6 0.042 9E-07 52.2 12.2 103 45-206 50-162 (482)
254 KOG4589|consensus 96.5 0.019 4.2E-07 48.3 8.7 17 42-58 68-84 (232)
255 PF13578 Methyltransf_24: Meth 96.4 0.001 2.3E-08 49.9 0.7 55 150-205 49-105 (106)
256 KOG2730|consensus 96.4 0.0022 4.8E-08 55.1 2.4 75 44-176 95-173 (263)
257 COG5459 Predicted rRNA methyla 96.4 0.039 8.4E-07 50.7 10.4 43 166-208 183-228 (484)
258 KOG1709|consensus 96.3 0.022 4.7E-07 49.1 8.1 104 42-204 100-205 (271)
259 KOG2187|consensus 96.2 0.011 2.3E-07 56.5 6.0 75 29-162 369-443 (534)
260 KOG1562|consensus 96.0 0.043 9.4E-07 49.2 8.7 144 43-239 121-281 (337)
261 PF13679 Methyltransf_32: Meth 95.7 0.023 5.1E-07 45.1 5.3 52 41-118 23-74 (141)
262 KOG2198|consensus 95.5 0.36 7.9E-06 44.5 12.9 137 39-219 151-316 (375)
263 PRK01747 mnmC bifunctional tRN 95.4 0.064 1.4E-06 53.2 8.6 73 151-225 148-225 (662)
264 PRK05785 hypothetical protein; 95.4 0.012 2.7E-07 50.6 3.1 87 43-145 139-225 (226)
265 TIGR00006 S-adenosyl-methyltra 95.3 0.051 1.1E-06 49.1 6.8 59 30-118 7-65 (305)
266 PF05971 Methyltransf_10: Prot 95.3 0.097 2.1E-06 47.1 8.4 81 44-180 103-189 (299)
267 COG0286 HsdM Type I restrictio 95.1 0.45 9.6E-06 45.8 12.9 88 4-118 145-235 (489)
268 PF03141 Methyltransf_29: Puta 95.0 0.16 3.5E-06 48.6 9.2 75 166-240 425-506 (506)
269 PF01861 DUF43: Protein of unk 95.0 1.4 3.1E-05 38.4 14.3 103 97-228 67-179 (243)
270 PF06859 Bin3: Bicoid-interact 94.9 0.043 9.2E-07 42.2 4.2 59 168-227 1-92 (110)
271 TIGR01444 fkbM_fam methyltrans 94.9 0.051 1.1E-06 42.5 4.9 43 46-118 1-43 (143)
272 PF07091 FmrO: Ribosomal RNA m 94.9 0.13 2.9E-06 45.1 7.7 120 42-223 104-240 (251)
273 COG4076 Predicted RNA methylas 94.8 0.053 1.2E-06 45.8 5.0 97 45-202 34-132 (252)
274 PRK13699 putative methylase; P 94.7 0.11 2.4E-06 44.8 6.9 76 153-228 3-97 (227)
275 PF05430 Methyltransf_30: S-ad 94.6 0.22 4.7E-06 39.1 7.8 88 151-241 32-124 (124)
276 KOG0822|consensus 94.5 0.11 2.3E-06 50.1 6.7 140 4-205 333-478 (649)
277 PF04989 CmcI: Cephalosporin h 93.2 0.36 7.8E-06 41.2 7.0 108 43-205 32-147 (206)
278 PTZ00357 methyltransferase; Pr 93.0 0.37 8E-06 48.0 7.6 154 2-200 638-830 (1072)
279 KOG2793|consensus 92.8 1.3 2.9E-05 38.8 10.2 37 169-205 163-199 (248)
280 KOG1596|consensus 92.7 0.27 5.8E-06 43.1 5.6 128 38-228 151-296 (317)
281 KOG4058|consensus 92.7 2.5 5.4E-05 34.6 10.7 116 33-210 62-177 (199)
282 PF02005 TRM: N2,N2-dimethylgu 92.6 0.23 4.9E-06 46.2 5.4 105 43-205 49-154 (377)
283 PF11312 DUF3115: Protein of u 92.1 0.84 1.8E-05 41.3 8.2 100 98-207 131-244 (315)
284 COG4301 Uncharacterized conser 92.0 4.8 0.0001 35.6 12.4 109 42-204 77-192 (321)
285 COG1064 AdhP Zn-dependent alco 91.9 0.46 9.9E-06 43.6 6.4 97 39-206 162-260 (339)
286 KOG3115|consensus 91.3 0.54 1.2E-05 40.3 5.7 35 185-219 163-200 (249)
287 PF02636 Methyltransf_28: Puta 91.3 0.61 1.3E-05 40.5 6.4 56 41-118 16-71 (252)
288 PRK11524 putative methyltransf 90.6 1 2.2E-05 40.0 7.2 78 151-228 8-104 (284)
289 PF05711 TylF: Macrocin-O-meth 90.4 1.8 4E-05 37.9 8.5 77 144-222 151-233 (248)
290 KOG1099|consensus 90.1 0.58 1.3E-05 40.8 5.0 54 151-204 90-162 (294)
291 PF01795 Methyltransf_5: MraW 90.0 0.43 9.3E-06 43.2 4.3 90 31-178 8-103 (310)
292 PF11599 AviRa: RRNA methyltra 89.0 0.57 1.2E-05 40.4 4.1 139 39-206 47-215 (246)
293 PRK10742 putative methyltransf 88.8 1 2.2E-05 39.6 5.6 138 33-226 76-219 (250)
294 PF10354 DUF2431: Domain of un 88.3 3.8 8.2E-05 33.6 8.4 75 155-229 58-154 (166)
295 KOG2539|consensus 87.7 1.8 3.9E-05 41.3 6.8 87 96-208 225-318 (491)
296 cd08283 FDH_like_1 Glutathione 87.1 2.9 6.3E-05 38.4 7.9 24 182-205 283-306 (386)
297 PF07757 AdoMet_MTase: Predict 86.4 1.3 2.7E-05 34.1 4.2 18 41-58 56-73 (112)
298 PF03514 GRAS: GRAS domain fam 86.1 13 0.00029 34.4 11.8 63 32-117 99-165 (374)
299 KOG2671|consensus 85.7 1 2.2E-05 41.5 3.9 110 40-206 205-355 (421)
300 cd00315 Cyt_C5_DNA_methylase C 84.2 12 0.00025 33.1 10.0 42 46-118 2-43 (275)
301 COG1565 Uncharacterized conser 83.2 3.6 7.9E-05 38.1 6.4 61 36-118 70-130 (370)
302 PF03269 DUF268: Caenorhabditi 83.2 2.4 5.3E-05 35.0 4.8 61 166-226 61-144 (177)
303 PRK11524 putative methyltransf 83.2 1.7 3.7E-05 38.5 4.3 45 42-118 207-251 (284)
304 COG3129 Predicted SAM-dependen 82.5 3.2 6.9E-05 36.4 5.4 47 42-118 77-123 (292)
305 COG0686 Ald Alanine dehydrogen 82.2 2.9 6.3E-05 38.1 5.3 76 96-202 190-265 (371)
306 PF01555 N6_N4_Mtase: DNA meth 82.1 1.2 2.6E-05 37.0 2.7 50 33-115 182-231 (231)
307 KOG1501|consensus 81.5 1.7 3.7E-05 41.3 3.7 42 46-118 69-110 (636)
308 KOG0024|consensus 81.3 10 0.00022 34.8 8.4 105 38-208 164-276 (354)
309 KOG1227|consensus 80.7 1.3 2.8E-05 40.0 2.6 98 44-202 195-293 (351)
310 COG1063 Tdh Threonine dehydrog 80.6 12 0.00026 34.2 8.9 76 97-208 193-272 (350)
311 PRK09424 pntA NAD(P) transhydr 80.2 9.4 0.0002 37.0 8.4 40 167-206 247-286 (509)
312 PF14740 DUF4471: Domain of un 79.3 3.8 8.3E-05 36.8 5.1 121 97-223 144-285 (289)
313 KOG1253|consensus 79.0 1.6 3.5E-05 41.9 2.7 105 42-205 108-216 (525)
314 KOG2920|consensus 78.8 1.4 3E-05 39.4 2.1 37 168-204 196-233 (282)
315 PRK09880 L-idonate 5-dehydroge 77.8 7.2 0.00016 35.0 6.6 33 168-206 235-267 (343)
316 PRK13699 putative methylase; P 77.6 3.6 7.7E-05 35.4 4.3 45 42-118 162-206 (227)
317 COG1867 TRM1 N2,N2-dimethylgua 77.3 8.5 0.00018 35.8 6.8 100 44-204 53-153 (380)
318 COG4121 Uncharacterized conser 74.9 8.8 0.00019 33.8 6.0 73 151-226 147-228 (252)
319 TIGR00027 mthyl_TIGR00027 meth 71.5 70 0.0015 28.0 14.1 55 150-204 132-196 (260)
320 cd08254 hydroxyacyl_CoA_DH 6-h 68.9 37 0.0008 29.7 8.8 34 166-205 230-263 (338)
321 TIGR00006 S-adenosyl-methyltra 68.0 8.3 0.00018 34.9 4.4 38 181-218 216-256 (305)
322 PF01555 N6_N4_Mtase: DNA meth 67.4 9.1 0.0002 31.6 4.4 48 182-229 33-85 (231)
323 PF11899 DUF3419: Protein of u 67.1 9.5 0.00021 35.6 4.8 59 150-208 275-337 (380)
324 COG2933 Predicted SAM-dependen 66.0 22 0.00047 31.9 6.5 87 42-198 210-296 (358)
325 PF04445 SAM_MT: Putative SAM- 65.6 8.4 0.00018 33.5 3.8 94 33-179 63-162 (234)
326 PHA01634 hypothetical protein 64.4 13 0.00028 29.7 4.3 45 43-118 28-72 (156)
327 PLN02232 ubiquinone biosynthes 64.3 2.2 4.7E-05 34.5 -0.1 58 42-103 72-129 (160)
328 PF01795 Methyltransf_5: MraW 64.3 7.3 0.00016 35.3 3.3 39 181-219 217-258 (310)
329 cd08230 glucose_DH Glucose deh 62.6 18 0.00039 32.5 5.6 33 167-205 237-269 (355)
330 KOG2651|consensus 62.5 12 0.00027 35.1 4.4 44 42-116 152-195 (476)
331 cd05188 MDR Medium chain reduc 61.6 29 0.00063 29.0 6.5 34 166-205 199-232 (271)
332 PRK00050 16S rRNA m(4)C1402 me 61.4 13 0.00029 33.4 4.5 37 181-217 212-251 (296)
333 COG1568 Predicted methyltransf 60.2 35 0.00077 30.8 6.7 101 98-227 176-288 (354)
334 KOG2352|consensus 60.1 20 0.00043 34.5 5.5 90 97-206 319-417 (482)
335 COG3510 CmcI Cephalosporin hyd 59.5 45 0.00098 28.6 6.9 82 150-231 118-225 (237)
336 KOG2078|consensus 59.0 8.4 0.00018 36.6 2.8 46 41-118 247-292 (495)
337 cd01842 SGNH_hydrolase_like_5 58.5 42 0.00091 28.1 6.5 41 165-205 47-99 (183)
338 PF11253 DUF3052: Protein of u 58.5 43 0.00094 26.4 6.3 62 167-229 44-113 (127)
339 COG0541 Ffh Signal recognition 57.2 1.7E+02 0.0036 28.1 11.0 126 29-208 76-224 (451)
340 PF01206 TusA: Sulfurtransfera 55.6 62 0.0013 21.9 6.6 50 187-237 16-68 (70)
341 PF06557 DUF1122: Protein of u 53.8 25 0.00054 29.0 4.4 40 185-224 66-120 (170)
342 KOG3924|consensus 53.8 43 0.00093 31.5 6.5 28 31-58 180-207 (419)
343 COG0270 Dcm Site-specific DNA 52.2 98 0.0021 28.0 8.6 113 44-221 3-141 (328)
344 TIGR00561 pntA NAD(P) transhyd 50.9 24 0.00052 34.3 4.6 36 167-202 246-281 (511)
345 cd08232 idonate-5-DH L-idonate 50.3 61 0.0013 28.6 6.9 32 167-204 230-261 (339)
346 TIGR00497 hsdM type I restrict 49.8 1.3E+02 0.0027 29.0 9.4 60 33-118 205-266 (501)
347 PF11899 DUF3419: Protein of u 49.7 32 0.00069 32.1 5.1 52 35-118 27-78 (380)
348 COG1748 LYS9 Saccharopine dehy 49.2 31 0.00068 32.3 4.9 50 96-176 24-76 (389)
349 PLN02233 ubiquinone biosynthes 47.6 8.6 0.00019 33.6 0.9 55 42-100 173-227 (261)
350 cd03423 SirA SirA (also known 47.4 89 0.0019 21.3 7.7 50 187-237 15-67 (69)
351 TIGR03451 mycoS_dep_FDH mycoth 47.3 98 0.0021 27.8 7.8 33 167-205 244-276 (358)
352 PF00145 DNA_methylase: C-5 cy 47.2 70 0.0015 27.9 6.7 114 46-228 2-142 (335)
353 PF02254 TrkA_N: TrkA-N domain 45.0 1.2E+02 0.0026 22.1 7.8 88 98-223 22-113 (116)
354 TIGR02825 B4_12hDH leukotriene 44.3 54 0.0012 28.8 5.6 32 167-205 206-237 (325)
355 cd08237 ribitol-5-phosphate_DH 43.9 74 0.0016 28.5 6.4 35 168-205 222-256 (341)
356 TIGR02822 adh_fam_2 zinc-bindi 43.5 1.5E+02 0.0033 26.3 8.4 33 168-206 223-255 (329)
357 PLN03154 putative allyl alcoho 42.6 1.8E+02 0.0038 26.2 8.7 31 167-204 227-257 (348)
358 TIGR00675 dcm DNA-methyltransf 42.4 2.3E+02 0.005 25.4 9.4 20 99-118 22-41 (315)
359 COG3315 O-Methyltransferase in 42.4 2.5E+02 0.0055 25.1 13.5 56 150-205 143-209 (297)
360 cd03420 SirA_RHOD_Pry_redox Si 42.3 1.1E+02 0.0024 20.9 7.9 50 186-236 14-66 (69)
361 KOG0780|consensus 40.9 3.3E+02 0.0071 26.0 14.0 64 165-228 180-250 (483)
362 PRK00299 sulfur transfer prote 40.8 1.3E+02 0.0028 21.3 8.2 54 184-238 22-78 (81)
363 TIGR01202 bchC 2-desacetyl-2-h 40.4 59 0.0013 28.6 5.2 33 167-205 199-231 (308)
364 PF00107 ADH_zinc_N: Zinc-bind 39.5 77 0.0017 23.6 5.1 35 167-207 57-91 (130)
365 PF06016 Reovirus_L2: Reovirus 38.6 27 0.00059 37.3 3.0 51 150-200 864-920 (1289)
366 PF09630 DUF2024: Domain of un 38.0 96 0.0021 22.5 4.9 51 168-224 19-80 (81)
367 KOG1269|consensus 37.9 1.4E+02 0.0031 27.7 7.3 53 176-228 284-342 (364)
368 KOG0023|consensus 37.3 2.3E+02 0.0049 26.3 8.3 46 40-116 178-224 (360)
369 TIGR00518 alaDH alanine dehydr 37.3 27 0.0006 32.2 2.6 37 168-204 230-266 (370)
370 cd08294 leukotriene_B4_DH_like 36.9 1.6E+02 0.0036 25.5 7.5 31 167-204 210-240 (329)
371 KOG2360|consensus 34.5 93 0.002 29.3 5.5 55 35-118 205-259 (413)
372 cd08234 threonine_DH_like L-th 33.7 1.9E+02 0.0042 25.1 7.4 33 166-204 224-256 (334)
373 TIGR02764 spore_ybaN_pdaB poly 33.3 80 0.0017 25.7 4.6 45 182-226 136-188 (191)
374 TIGR03366 HpnZ_proposed putati 32.0 1.6E+02 0.0035 25.3 6.5 33 167-205 186-218 (280)
375 PF05206 TRM13: Methyltransfer 31.8 73 0.0016 28.1 4.3 18 41-58 16-33 (259)
376 cd03422 YedF YedF is a bacteri 31.5 1.7E+02 0.0037 19.9 7.7 49 187-236 15-66 (69)
377 cd08281 liver_ADH_like1 Zinc-d 31.5 1.8E+02 0.0038 26.3 6.9 32 168-205 259-290 (371)
378 PRK09548 PTS system ascorbate- 31.2 1.6E+02 0.0035 29.3 6.8 32 144-178 533-564 (602)
379 PF06897 DUF1269: Protein of u 31.1 1.4E+02 0.0031 22.3 5.2 42 184-225 41-85 (102)
380 cd08255 2-desacetyl-2-hydroxye 30.2 3.3E+02 0.0072 22.9 8.2 33 167-205 158-190 (277)
381 cd05285 sorbitol_DH Sorbitol d 30.1 2.9E+02 0.0063 24.3 8.0 32 167-204 233-264 (343)
382 PRK11018 hypothetical protein; 29.3 2E+02 0.0044 20.1 7.8 49 188-237 25-76 (78)
383 TIGR02884 spore_pdaA delta-lac 28.6 1.1E+02 0.0023 26.0 4.7 45 183-227 172-222 (224)
384 cd08245 CAD Cinnamyl alcohol d 28.5 3E+02 0.0064 23.9 7.7 32 167-204 224-255 (330)
385 cd08239 THR_DH_like L-threonin 28.4 4.1E+02 0.0088 23.3 9.3 33 167-205 230-262 (339)
386 COG0863 DNA modification methy 27.8 1.5E+02 0.0033 25.7 5.6 47 40-118 219-265 (302)
387 cd01065 NAD_bind_Shikimate_DH 27.7 2.8E+02 0.0061 21.2 7.9 53 167-223 80-136 (155)
388 KOG0821|consensus 27.3 1.7E+02 0.0036 25.8 5.5 56 32-118 39-94 (326)
389 cd08293 PTGR2 Prostaglandin re 26.7 3.7E+02 0.0079 23.6 8.0 31 167-204 223-253 (345)
390 PRK07417 arogenate dehydrogena 26.1 3.5E+02 0.0075 23.5 7.6 32 168-202 57-88 (279)
391 COG0604 Qor NADPH:quinone redu 25.9 2.4E+02 0.0052 25.4 6.7 33 167-206 210-242 (326)
392 cd08261 Zn_ADH7 Alcohol dehydr 25.4 3.5E+02 0.0077 23.6 7.7 32 167-204 226-257 (337)
393 PF12692 Methyltransf_17: S-ad 25.1 1.2E+02 0.0026 24.8 4.0 27 31-58 17-43 (160)
394 COG5379 BtaA S-adenosylmethion 24.9 2.3E+02 0.0051 26.0 6.2 55 151-205 308-366 (414)
395 COG1486 CelF Alpha-galactosida 24.7 3.9E+02 0.0085 25.6 8.0 45 44-112 3-47 (442)
396 cd05278 FDH_like Formaldehyde 24.5 3.2E+02 0.0069 23.9 7.2 32 167-204 235-266 (347)
397 KOG1098|consensus 23.9 46 0.001 33.3 1.7 17 42-58 43-59 (780)
398 PF10237 N6-adenineMlase: Prob 23.7 2.4E+02 0.0053 22.9 5.7 61 166-229 84-146 (162)
399 cd08295 double_bond_reductase_ 23.3 4E+02 0.0086 23.4 7.6 31 167-204 220-250 (338)
400 cd00291 SirA_YedF_YeeD SirA, Y 23.2 2.3E+02 0.005 18.7 7.8 39 190-228 18-59 (69)
401 PRK08265 short chain dehydroge 22.9 4.6E+02 0.01 22.0 8.1 15 97-111 30-44 (261)
402 COG2813 RsmC 16S RNA G1207 met 22.8 2.3E+02 0.0051 25.6 5.8 52 167-219 36-90 (300)
403 cd08236 sugar_DH NAD(P)-depend 22.8 5.2E+02 0.011 22.6 8.6 33 167-205 226-258 (343)
404 cd00401 AdoHcyase S-adenosyl-L 22.7 2.7E+02 0.0058 26.3 6.5 33 168-206 257-290 (413)
405 PF01963 TraB: TraB family; I 22.7 1.4E+02 0.0031 25.2 4.5 39 186-224 215-258 (259)
406 PRK07066 3-hydroxybutyryl-CoA 22.6 1.6E+02 0.0034 26.8 4.8 22 96-117 29-50 (321)
407 PF07101 DUF1363: Protein of u 22.5 35 0.00076 25.7 0.5 12 47-58 6-17 (124)
408 PF03446 NAD_binding_2: NAD bi 22.4 1.5E+02 0.0032 23.6 4.2 59 168-228 57-121 (163)
409 PF02086 MethyltransfD12: D12 22.1 1.1E+02 0.0025 25.8 3.7 32 27-58 4-35 (260)
410 PRK10669 putative cation:proto 21.7 7.4E+02 0.016 24.0 9.9 87 97-223 440-532 (558)
411 TIGR02873 spore_ylxY probable 21.7 1.3E+02 0.0028 26.5 4.0 46 182-227 215-265 (268)
412 PRK11064 wecC UDP-N-acetyl-D-m 21.0 3.3E+02 0.0072 25.5 6.8 51 168-218 75-136 (415)
413 PRK05808 3-hydroxybutyryl-CoA 20.8 2.2E+02 0.0047 24.8 5.2 20 97-116 26-45 (282)
414 PRK11730 fadB multifunctional 20.8 4.1E+02 0.0089 26.9 7.8 23 96-118 335-357 (715)
415 PRK03659 glutathione-regulated 20.7 6.6E+02 0.014 24.7 9.1 87 97-223 423-515 (601)
416 COG0863 DNA modification methy 20.6 2.3E+02 0.0051 24.4 5.4 46 184-229 78-125 (302)
417 PRK09496 trkA potassium transp 20.5 6.4E+02 0.014 23.3 8.7 107 52-223 237-347 (453)
418 COG3735 Uncharacterized protei 20.4 1.2E+02 0.0026 27.4 3.5 43 183-225 251-298 (299)
419 TIGR02818 adh_III_F_hyde S-(hy 20.1 6.4E+02 0.014 22.6 8.7 33 168-206 255-288 (368)
420 PRK10458 DNA cytosine methylas 20.1 7.8E+02 0.017 23.6 10.3 43 44-117 88-130 (467)
No 1
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=100.00 E-value=7.1e-32 Score=233.04 Aligned_cols=182 Identities=49% Similarity=0.785 Sum_probs=167.8
Q ss_pred chHHHHHhhhhhccccchhhhhhhhHHHHHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhh
Q psy1420 3 LPMYEVFENVAKSYDTMNDAMSFGIHRLWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLI 82 (241)
Q Consensus 3 ~~~~~~f~~~~~~yd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (241)
+.+.++|+++++.||.+|+.+|++.|+.|++.+.+.+...+|.+|||||||||..+ ..+....
T Consensus 11 ~~v~~vF~~ia~~YD~~n~~~S~g~~~~Wr~~~i~~~~~~~g~~vLDva~GTGd~a-------------~~~~k~~---- 73 (238)
T COG2226 11 EKVQKVFDKVAKKYDLMNDLMSFGLHRLWRRALISLLGIKPGDKVLDVACGTGDMA-------------LLLAKSV---- 73 (238)
T ss_pred HHHHHHHHhhHHHHHhhcccccCcchHHHHHHHHHhhCCCCCCEEEEecCCccHHH-------------HHHHHhc----
Confidence 47899999999999999999999999999999999998889999999999999999 5555521
Q ss_pred hcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCC
Q psy1420 83 AGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL 162 (241)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 162 (241)
...+++++|+|+.|++.+++++. +.+.. +++++.+|++++
T Consensus 74 -------------g~g~v~~~D~s~~ML~~a~~k~~-------------------------~~~~~--~i~fv~~dAe~L 113 (238)
T COG2226 74 -------------GTGEVVGLDISESMLEVAREKLK-------------------------KKGVQ--NVEFVVGDAENL 113 (238)
T ss_pred -------------CCceEEEEECCHHHHHHHHHHhh-------------------------ccCcc--ceEEEEechhhC
Confidence 24689999999999999999988 55555 399999999999
Q ss_pred CCCCCceeEEeeeehhhccccHHHHHHHHHHhccCCcEEEEEecCH----------------------------------
Q psy1420 163 PIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH---------------------------------- 208 (241)
Q Consensus 163 ~~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~---------------------------------- 208 (241)
|+++++||+|.++++|+++++++++|+|++|+|||||++++.+++.
T Consensus 114 Pf~D~sFD~vt~~fglrnv~d~~~aL~E~~RVlKpgG~~~vle~~~p~~~~~~~~~~~~~~~~v~P~~g~~~~~~~~~y~ 193 (238)
T COG2226 114 PFPDNSFDAVTISFGLRNVTDIDKALKEMYRVLKPGGRLLVLEFSKPDNPVLRKAYILYYFKYVLPLIGKLVAKDAEAYE 193 (238)
T ss_pred CCCCCccCEEEeeehhhcCCCHHHHHHHHHHhhcCCeEEEEEEcCCCCchhhHHHHHHHHHHhHhhhhceeeecChHHHH
Confidence 9999999999999999999999999999999999999999999776
Q ss_pred ------------HHHHHHHHHCCCceEEEEEecCceeEEEeeecC
Q psy1420 209 ------------EEFKSMIESAGFQYVTYENLTFGVVAIHSGFKL 241 (241)
Q Consensus 209 ------------~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~~~ 241 (241)
+++.++++++||..+..+++++|++++|+|.||
T Consensus 194 yL~eSi~~~p~~~~l~~~~~~~gf~~i~~~~~~~G~~~l~~g~K~ 238 (238)
T COG2226 194 YLAESIRRFPDQEELKQMIEKAGFEEVRYENLTFGIVALHRGYKP 238 (238)
T ss_pred HHHHHHHhCCCHHHHHHHHHhcCceEEeeEeeeeeeEEEEEEecC
Confidence 899999999999999999999999999999986
No 2
>KOG1540|consensus
Probab=99.97 E-value=1e-30 Score=224.27 Aligned_cols=189 Identities=58% Similarity=0.936 Sum_probs=168.4
Q ss_pred hHHHHHhhhhhccccchhhhhhhhHHHHHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhh
Q psy1420 4 PMYEVFENVAKSYDTMNDAMSFGIHRLWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIA 83 (241)
Q Consensus 4 ~~~~~f~~~~~~yd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (241)
.+..+|+.+|+.||.||+.|+.+.|+.|.+.+...+++.+++++||++||||..+ ..++. ...
T Consensus 61 ~V~~vF~~vA~~YD~mND~mSlGiHRlWKd~~v~~L~p~~~m~~lDvaGGTGDia-------------Fril~----~v~ 123 (296)
T KOG1540|consen 61 LVHHVFESVAKKYDIMNDAMSLGIHRLWKDMFVSKLGPGKGMKVLDVAGGTGDIA-------------FRILR----HVK 123 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcchhHHHHHHhhhccCCCCCCeEEEecCCcchhH-------------HHHHH----hhc
Confidence 4688999999999999999999999999999999999999999999999999999 56665 222
Q ss_pred cCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCC-CCeeEEecccCCC
Q psy1420 84 GQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPN-PRLRFLEANAEEL 162 (241)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~~ 162 (241)
.+++ -...+++..|++|+|+..+++++. +.++.. .++.++++|++.+
T Consensus 124 s~~~-------~~~~~V~v~Dinp~mL~vgkqRa~-------------------------~~~l~~~~~~~w~~~dAE~L 171 (296)
T KOG1540|consen 124 SQFG-------DRESKVTVLDINPHMLAVGKQRAK-------------------------KRPLKASSRVEWVEGDAEDL 171 (296)
T ss_pred cccC-------CCCceEEEEeCCHHHHHHHHHHHh-------------------------hcCCCcCCceEEEeCCcccC
Confidence 2211 134789999999999999999987 333332 3589999999999
Q ss_pred CCCCCceeEEeeeehhhccccHHHHHHHHHHhccCCcEEEEEecCH----------------------------------
Q psy1420 163 PIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH---------------------------------- 208 (241)
Q Consensus 163 ~~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~---------------------------------- 208 (241)
|++++++|+++++++|+++++++++|++++|+|||||+++|.+|++
T Consensus 172 pFdd~s~D~yTiafGIRN~th~~k~l~EAYRVLKpGGrf~cLeFskv~~~~l~~fy~~ysf~VlpvlG~~iagd~~sYqY 251 (296)
T KOG1540|consen 172 PFDDDSFDAYTIAFGIRNVTHIQKALREAYRVLKPGGRFSCLEFSKVENEPLKWFYDQYSFDVLPVLGEIIAGDRKSYQY 251 (296)
T ss_pred CCCCCcceeEEEecceecCCCHHHHHHHHHHhcCCCcEEEEEEccccccHHHHHHHHhhhhhhhchhhHhhhhhHhhhhh
Confidence 9999999999999999999999999999999999999999999888
Q ss_pred -----------HHHHHHHHHCCCceEE-EEEecCceeEEEeeecC
Q psy1420 209 -----------EEFKSMIESAGFQYVT-YENLTFGVVAIHSGFKL 241 (241)
Q Consensus 209 -----------~~~~~~l~~~Gf~~~~-~~~~~~~~~~~~~~~~~ 241 (241)
++++.+++++||..+. +++++||+++||.|.|+
T Consensus 252 LveSI~rfp~qe~f~~miedaGF~~~~~ye~lt~Gv~aIH~giK~ 296 (296)
T KOG1540|consen 252 LVESIRRFPPQEEFASMIEDAGFSSVNGYENLTFGVVAIHSGIKL 296 (296)
T ss_pred HHhhhhcCCCHHHHHHHHHHcCCccccccccceeeeeeeehhccC
Confidence 9999999999999997 99999999999999875
No 3
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.97 E-value=8e-32 Score=233.16 Aligned_cols=182 Identities=39% Similarity=0.674 Sum_probs=90.8
Q ss_pred chHHHHHhhhhhccccchhhhhhhhHHHHHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhh
Q psy1420 3 LPMYEVFENVAKSYDTMNDAMSFGIHRLWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLI 82 (241)
Q Consensus 3 ~~~~~~f~~~~~~yd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (241)
+.++++|+.++..||.+|..++++.++.|++.+.+.+...++.+|||+|||||..+ ..++..++
T Consensus 7 ~~v~~~Fd~ia~~YD~~n~~ls~g~~~~wr~~~~~~~~~~~g~~vLDv~~GtG~~~-------------~~l~~~~~--- 70 (233)
T PF01209_consen 7 QYVRKMFDRIAPRYDRMNDLLSFGQDRRWRRKLIKLLGLRPGDRVLDVACGTGDVT-------------RELARRVG--- 70 (233)
T ss_dssp ------------------------------SHHHHHHT--S--EEEEET-TTSHHH-------------HHHGGGSS---
T ss_pred HHHHHHHHHHHHHhCCCccccCCcHHHHHHHHHHhccCCCCCCEEEEeCCChHHHH-------------HHHHHHCC---
Confidence 57899999999999999999999999999999999888889999999999999988 44433111
Q ss_pred hcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCC
Q psy1420 83 AGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL 162 (241)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 162 (241)
....++++|+|+.|++.++++.. +.+.. +++++++|++.+
T Consensus 71 -------------~~~~v~~vD~s~~ML~~a~~k~~-------------------------~~~~~--~i~~v~~da~~l 110 (233)
T PF01209_consen 71 -------------PNGKVVGVDISPGMLEVARKKLK-------------------------REGLQ--NIEFVQGDAEDL 110 (233)
T ss_dssp ----------------EEEEEES-HHHHHHHHHHHH-------------------------HTT----SEEEEE-BTTB-
T ss_pred -------------CccEEEEecCCHHHHHHHHHHHH-------------------------hhCCC--CeeEEEcCHHHh
Confidence 35689999999999999999987 44443 799999999999
Q ss_pred CCCCCceeEEeeeehhhccccHHHHHHHHHHhccCCcEEEEEecCH----------------------------------
Q psy1420 163 PIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH---------------------------------- 208 (241)
Q Consensus 163 ~~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~---------------------------------- 208 (241)
|+++++||+|++++++++++++.+++++++|+|||||++++.+++.
T Consensus 111 p~~d~sfD~v~~~fglrn~~d~~~~l~E~~RVLkPGG~l~ile~~~p~~~~~~~~~~~y~~~ilP~~g~l~~~~~~~Y~y 190 (233)
T PF01209_consen 111 PFPDNSFDAVTCSFGLRNFPDRERALREMYRVLKPGGRLVILEFSKPRNPLLRALYKFYFKYILPLIGRLLSGDREAYRY 190 (233)
T ss_dssp -S-TT-EEEEEEES-GGG-SSHHHHHHHHHHHEEEEEEEEEEEEEB-SSHHHHHHHHH----------------------
T ss_pred cCCCCceeEEEHHhhHHhhCCHHHHHHHHHHHcCCCeEEEEeeccCCCCchhhceeeeeecccccccccccccccccccc
Confidence 9999999999999999999999999999999999999999998666
Q ss_pred -----------HHHHHHHHHCCCceEEEEEecCceeEEEeeec
Q psy1420 209 -----------EEFKSMIESAGFQYVTYENLTFGVVAIHSGFK 240 (241)
Q Consensus 209 -----------~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~~ 240 (241)
+++.++++++||+.++.+++++|++.+|+|.|
T Consensus 191 L~~Si~~f~~~~~~~~~l~~~Gf~~v~~~~~~~G~~~i~~g~K 233 (233)
T PF01209_consen 191 LPESIRRFPSPEELKELLEEAGFKNVEYRPLTFGIVTIHVGTK 233 (233)
T ss_dssp -------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccCC
Confidence 89999999999999999999999999999987
No 4
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.93 E-value=1.2e-24 Score=191.17 Aligned_cols=185 Identities=28% Similarity=0.486 Sum_probs=153.8
Q ss_pred chHHHHHhhhhhccccchhhhhhhhHHHHHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhh
Q psy1420 3 LPMYEVFENVAKSYDTMNDAMSFGIHRLWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLI 82 (241)
Q Consensus 3 ~~~~~~f~~~~~~yd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (241)
+.++++|+.+++.||.+++.++.+.++.|++.+.+.+...++.+|||+|||+|..+ ..+...++
T Consensus 33 ~~v~~~f~~~A~~YD~~~~~~s~g~~~~~r~~~~~~~~~~~~~~VLDlGcGtG~~~-------------~~la~~~~--- 96 (261)
T PLN02233 33 NERQALFNRIAPVYDNLNDLLSLGQHRIWKRMAVSWSGAKMGDRVLDLCCGSGDLA-------------FLLSEKVG--- 96 (261)
T ss_pred HHHHHHHHHhhhHHHHhhhhhcCChhHHHHHHHHHHhCCCCCCEEEEECCcCCHHH-------------HHHHHHhC---
Confidence 35788999999999999888888888889888877777788899999999999987 33332000
Q ss_pred hcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCC
Q psy1420 83 AGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL 162 (241)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 162 (241)
....++++|+|+.|++.++++.... .... ..+++++++|+.++
T Consensus 97 -------------~~~~V~gvD~S~~ml~~A~~r~~~~-----------------------~~~~-~~~i~~~~~d~~~l 139 (261)
T PLN02233 97 -------------SDGKVMGLDFSSEQLAVAASRQELK-----------------------AKSC-YKNIEWIEGDATDL 139 (261)
T ss_pred -------------CCCEEEEEECCHHHHHHHHHHhhhh-----------------------hhcc-CCCeEEEEcccccC
Confidence 2358999999999999998764300 0011 13688999999999
Q ss_pred CCCCCceeEEeeeehhhccccHHHHHHHHHHhccCCcEEEEEecCH----------------------------------
Q psy1420 163 PIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH---------------------------------- 208 (241)
Q Consensus 163 ~~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~---------------------------------- 208 (241)
|+++++||+|++++++++++++..++++++|+|||||++++.++..
T Consensus 140 p~~~~sfD~V~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~l 219 (261)
T PLN02233 140 PFDDCYFDAITMGYGLRNVVDRLKAMQEMYRVLKPGSRVSILDFNKSTQPFTTSMQEWMIDNVVVPVATGYGLAKEYEYL 219 (261)
T ss_pred CCCCCCEeEEEEecccccCCCHHHHHHHHHHHcCcCcEEEEEECCCCCcHHHHHHHHHHHhhhhhHHHHHhCChHHHHHH
Confidence 9988899999999999999999999999999999999999876432
Q ss_pred ----------HHHHHHHHHCCCceEEEEEecCceeEEEeeec
Q psy1420 209 ----------EEFKSMIESAGFQYVTYENLTFGVVAIHSGFK 240 (241)
Q Consensus 209 ----------~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~~ 240 (241)
+++.++++++||+.++...+.+|++.+|+|++
T Consensus 220 ~~s~~~f~s~~el~~ll~~aGF~~~~~~~~~~g~~~~~~~~~ 261 (261)
T PLN02233 220 KSSINEYLTGEELEKLALEAGFSSAKHYEISGGLMGNLVATR 261 (261)
T ss_pred HHHHHhcCCHHHHHHHHHHCCCCEEEEEEcCCCeeEEEEEeC
Confidence 67789999999999999999999999999975
No 5
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.92 E-value=1e-23 Score=180.85 Aligned_cols=182 Identities=34% Similarity=0.578 Sum_probs=156.9
Q ss_pred chHHHHHhhhhhccccchhhhhhhhHHHHHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhh
Q psy1420 3 LPMYEVFENVAKSYDTMNDAMSFGIHRLWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLI 82 (241)
Q Consensus 3 ~~~~~~f~~~~~~yd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (241)
+.+.++|+.++..||.++..++++.+..|++.+++.+..+++.+|||+|||+|.++ ..+...++
T Consensus 5 ~~~~~~f~~~a~~yd~~~~~~~~~~~~~~~~~~l~~l~~~~~~~vLDiGcG~G~~~-------------~~la~~~~--- 68 (231)
T TIGR02752 5 ERVHKVFEKIYKKYDRMNSVISFQRHKKWRKDTMKRMNVQAGTSALDVCCGTADWS-------------IALAEAVG--- 68 (231)
T ss_pred HHHHHHHHHhhhHHhHHHHHhcCCchHHHHHHHHHhcCCCCCCEEEEeCCCcCHHH-------------HHHHHHhC---
Confidence 46889999999999999988888888999999999998888999999999999988 43333110
Q ss_pred hcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCC
Q psy1420 83 AGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL 162 (241)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 162 (241)
....++++|+++.+++.++++.. ..+. ++++++++|+...
T Consensus 69 -------------~~~~v~gvD~s~~~~~~a~~~~~-------------------------~~~~--~~v~~~~~d~~~~ 108 (231)
T TIGR02752 69 -------------PEGHVIGLDFSENMLSVGRQKVK-------------------------DAGL--HNVELVHGNAMEL 108 (231)
T ss_pred -------------CCCEEEEEECCHHHHHHHHHHHH-------------------------hcCC--CceEEEEechhcC
Confidence 24589999999999999998876 3333 3688999999888
Q ss_pred CCCCCceeEEeeeehhhccccHHHHHHHHHHhccCCcEEEEEecCH----------------------------------
Q psy1420 163 PIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH---------------------------------- 208 (241)
Q Consensus 163 ~~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~---------------------------------- 208 (241)
+.+.++||+|++.+++++.+++.++++++.++|+|||++++.+...
T Consensus 109 ~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 188 (231)
T TIGR02752 109 PFDDNSFDYVTIGFGLRNVPDYMQVLREMYRVVKPGGKVVCLETSQPTIPGFKQLYFFYFKYIMPLFGKLFAKSYKEYSW 188 (231)
T ss_pred CCCCCCccEEEEecccccCCCHHHHHHHHHHHcCcCeEEEEEECCCCCChHHHHHHHHHHcChhHHhhHHhcCCHHHHHH
Confidence 8777899999999999999999999999999999999999876321
Q ss_pred -----------HHHHHHHHHCCCceEEEEEecCceeEEEeeec
Q psy1420 209 -----------EEFKSMIESAGFQYVTYENLTFGVVAIHSGFK 240 (241)
Q Consensus 209 -----------~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~~ 240 (241)
+++.++++++||..+++....+|.+++++|+|
T Consensus 189 ~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~~~g~~~~~~~~~ 231 (231)
T TIGR02752 189 LQESTRDFPGMDELAEMFQEAGFKDVEVKSYTGGVAAMHMGFK 231 (231)
T ss_pred HHHHHHHcCCHHHHHHHHHHcCCCeeEEEEcccceEEEEEEEC
Confidence 56789999999999999999999999999987
No 6
>PRK05785 hypothetical protein; Provisional
Probab=99.89 E-value=1.4e-22 Score=174.64 Aligned_cols=169 Identities=20% Similarity=0.331 Sum_probs=138.1
Q ss_pred chHHHHHhhhhhccccchhhhhhhhHHHHHHHHHhhcCC--CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhh
Q psy1420 3 LPMYEVFENVAKSYDTMNDAMSFGIHRLWKDIFIDRLGP--THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQ 80 (241)
Q Consensus 3 ~~~~~~f~~~~~~yd~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (241)
+.++++|+.+++.||.++..++++.+..|++.+.+.+.. .++.+|||+|||||..+ ..+..
T Consensus 9 ~~v~~~f~~iA~~YD~~n~~~s~g~~~~wr~~~~~~l~~~~~~~~~VLDlGcGtG~~~-------------~~l~~---- 71 (226)
T PRK05785 9 EELQEAYNKIPKAYDRANRFISFNQDVRWRAELVKTILKYCGRPKKVLDVAAGKGELS-------------YHFKK---- 71 (226)
T ss_pred HHHHHHHHhhhHHHHHhhhhccCCCcHHHHHHHHHHHHHhcCCCCeEEEEcCCCCHHH-------------HHHHH----
Confidence 358899999999999999888888888888777665532 34679999999999887 33333
Q ss_pred hhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccC
Q psy1420 81 LIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAE 160 (241)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 160 (241)
....+++|+|+|+.|++.++.+. ..+++|++
T Consensus 72 --------------~~~~~v~gvD~S~~Ml~~a~~~~-----------------------------------~~~~~d~~ 102 (226)
T PRK05785 72 --------------VFKYYVVALDYAENMLKMNLVAD-----------------------------------DKVVGSFE 102 (226)
T ss_pred --------------hcCCEEEEECCCHHHHHHHHhcc-----------------------------------ceEEechh
Confidence 01357999999999999986432 24678889
Q ss_pred CCCCCCCceeEEeeeehhhccccHHHHHHHHHHhccCCcEEEEEecCH--------------------------------
Q psy1420 161 ELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH-------------------------------- 208 (241)
Q Consensus 161 ~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~-------------------------------- 208 (241)
.+|+++++||+|++++++++++++++++++++|+|||.+ .+.+++.
T Consensus 103 ~lp~~d~sfD~v~~~~~l~~~~d~~~~l~e~~RvLkp~~--~ile~~~p~~~~~~~~~~~y~~~~~P~~~~~~~~~~~~Y 180 (226)
T PRK05785 103 ALPFRDKSFDVVMSSFALHASDNIEKVIAEFTRVSRKQV--GFIAMGKPDNVIKRKYLSFYLRYIMPYIACLAGAKCRDY 180 (226)
T ss_pred hCCCCCCCEEEEEecChhhccCCHHHHHHHHHHHhcCce--EEEEeCCCCcHHHHHHHHHHHHHHHHHHHHHhcCChHHH
Confidence 999989999999999999999999999999999999943 2223221
Q ss_pred -------------HHHHHHHHHCCCceEEEEEecCceeEEEeeec
Q psy1420 209 -------------EEFKSMIESAGFQYVTYENLTFGVVAIHSGFK 240 (241)
Q Consensus 209 -------------~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~~ 240 (241)
+++.++++++| ..++.+.+++|++++|+|+|
T Consensus 181 ~yl~~si~~f~~~~~~~~~~~~~~-~~~~~~~~~~G~~~~~~~~k 224 (226)
T PRK05785 181 KYIYYIYERLPTNSFHREIFEKYA-DIKVYEERGLGLVYFVVGSS 224 (226)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHh-CceEEEEccccEEEEEEEee
Confidence 89999999984 77999999999999999987
No 7
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.86 E-value=3.7e-20 Score=158.28 Aligned_cols=184 Identities=42% Similarity=0.706 Sum_probs=151.7
Q ss_pred chHHHHHhhhhhccccchhhhhhhhHHHHHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhh
Q psy1420 3 LPMYEVFENVAKSYDTMNDAMSFGIHRLWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLI 82 (241)
Q Consensus 3 ~~~~~~f~~~~~~yd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (241)
+...++|++++..|+..++.+..+.+..+...+...+...++.+|||+|||+|..+ ..++. ..
T Consensus 11 ~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~-------------~~l~~----~~ 73 (239)
T PRK00216 11 EKVAEMFDSIAPKYDLMNDLLSFGLHRVWRRKTIKWLGVRPGDKVLDLACGTGDLA-------------IALAK----AV 73 (239)
T ss_pred HHHHHHHHHhhhhHHHHHHHHhcCCcHHHHHHHHHHhCCCCCCeEEEeCCCCCHHH-------------HHHHH----Hc
Confidence 46788999999999986666666667777778888777777889999999999988 44443 10
Q ss_pred hcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCC
Q psy1420 83 AGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL 162 (241)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 162 (241)
. ...+++++|+++.+++.+++++. ..+.. .++.+...|+...
T Consensus 74 ~------------~~~~v~~~D~s~~~~~~a~~~~~-------------------------~~~~~-~~~~~~~~d~~~~ 115 (239)
T PRK00216 74 G------------KTGEVVGLDFSEGMLAVGREKLR-------------------------DLGLS-GNVEFVQGDAEAL 115 (239)
T ss_pred C------------CCCeEEEEeCCHHHHHHHHHhhc-------------------------ccccc-cCeEEEecccccC
Confidence 0 24689999999999999998876 32222 4678899999887
Q ss_pred CCCCCceeEEeeeehhhccccHHHHHHHHHHhccCCcEEEEEec------------------------------------
Q psy1420 163 PIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEF------------------------------------ 206 (241)
Q Consensus 163 ~~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~------------------------------------ 206 (241)
+.+.++||+|+++.++++.+++...+..+.++|+|||.+++.++
T Consensus 116 ~~~~~~~D~I~~~~~l~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (239)
T PRK00216 116 PFPDNSFDAVTIAFGLRNVPDIDKALREMYRVLKPGGRLVILEFSKPTNPPLKKAYDFYLFKVLPLIGKLISKNAEAYSY 195 (239)
T ss_pred CCCCCCccEEEEecccccCCCHHHHHHHHHHhccCCcEEEEEEecCCCchHHHHHHHHHHHhhhHHHHHHHcCCcHHHHH
Confidence 76667899999999999999999999999999999999987653
Q ss_pred ---------CHHHHHHHHHHCCCceEEEEEecCceeEEEeeecC
Q psy1420 207 ---------SHEEFKSMIESAGFQYVTYENLTFGVVAIHSGFKL 241 (241)
Q Consensus 207 ---------~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~~~ 241 (241)
+.+++.++++++||+.+....+.+|...++.|+||
T Consensus 196 ~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~~ 239 (239)
T PRK00216 196 LAESIRAFPDQEELAAMLEEAGFERVRYRNLTGGIVALHVGYKP 239 (239)
T ss_pred HHHHHHhCCCHHHHHHHHHhCCCceeeeeeeecCcEEEEEEecC
Confidence 11568889999999999999999999999999997
No 8
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.83 E-value=4.2e-19 Score=150.24 Aligned_cols=177 Identities=46% Similarity=0.764 Sum_probs=147.4
Q ss_pred HHHHhhhhhccccchhhhhhhhHHHHHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcC
Q psy1420 6 YEVFENVAKSYDTMNDAMSFGIHRLWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQ 85 (241)
Q Consensus 6 ~~~f~~~~~~yd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (241)
.++|+.++..||..+..+..+..+.++..+.+.+...++.+|||+|||+|..+ ..++...+
T Consensus 2 ~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~-------------~~~~~~~~------ 62 (223)
T TIGR01934 2 QEMFDRIAPKYDLLNDLLSFGLHRLWRRRAVKLIGVFKGQKVLDVACGTGDLA-------------IELAKSAP------ 62 (223)
T ss_pred HhHHHHHHhhhhHHHHHHhcccHHHHHHHHHHHhccCCCCeEEEeCCCCChhH-------------HHHHHhcC------
Confidence 57899999999999888777777788888888887778889999999999988 43333100
Q ss_pred CCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCC
Q psy1420 86 WKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIE 165 (241)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 165 (241)
...+++++|+++.+++.+.++.. . ..++.+..+|+.+.+.+
T Consensus 63 ----------~~~~~~~iD~~~~~~~~~~~~~~----------------------------~-~~~i~~~~~d~~~~~~~ 103 (223)
T TIGR01934 63 ----------DRGKVTGVDFSSEMLEVAKKKSE----------------------------L-PLNIEFIQADAEALPFE 103 (223)
T ss_pred ----------CCceEEEEECCHHHHHHHHHHhc----------------------------c-CCCceEEecchhcCCCC
Confidence 12579999999999998887642 1 13578889999888776
Q ss_pred CCceeEEeeeehhhccccHHHHHHHHHHhccCCcEEEEEecC--------------------------------------
Q psy1420 166 SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFS-------------------------------------- 207 (241)
Q Consensus 166 ~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~-------------------------------------- 207 (241)
.++||+|+++.++++.+++..+++++.+.|+|||++++.+..
T Consensus 104 ~~~~D~i~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (223)
T TIGR01934 104 DNSFDAVTIAFGLRNVTDIQKALREMYRVLKPGGRLVILEFSKPANALLKKFYKFYLKNVLPSIGGLISKNAEAYTYLPE 183 (223)
T ss_pred CCcEEEEEEeeeeCCcccHHHHHHHHHHHcCCCcEEEEEEecCCCchhhHHHHHHHHHHhhhhhhhhhcCCchhhHHHHH
Confidence 778999999999999999999999999999999999986531
Q ss_pred -------HHHHHHHHHHCCCceEEEEEecCceeEEEeeec
Q psy1420 208 -------HEEFKSMIESAGFQYVTYENLTFGVVAIHSGFK 240 (241)
Q Consensus 208 -------~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~~ 240 (241)
.+++.++++++||+.+..+++.+|+..+++|+|
T Consensus 184 ~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~ 223 (223)
T TIGR01934 184 SIRAFPSQEELAAMLKEAGFEEVRYRSLTFGVAAIHVGKK 223 (223)
T ss_pred HHHhCCCHHHHHHHHHHcCCccceeeeeecceeeEEEecC
Confidence 156889999999999999999999999999986
No 9
>PLN02244 tocopherol O-methyltransferase
Probab=99.80 E-value=4.8e-19 Score=161.25 Aligned_cols=174 Identities=17% Similarity=0.229 Sum_probs=132.5
Q ss_pred cchHHHHHhhhhhccccc-hhhhhhhh-------------HHHHHHHHHhhcCC-----CCCCeEEEEecCCCcchhHHH
Q psy1420 2 KLPMYEVFENVAKSYDTM-NDAMSFGI-------------HRLWKDIFIDRLGP-----THDTKLLDVAGGTDPLANLLF 62 (241)
Q Consensus 2 ~~~~~~~f~~~~~~yd~~-~~~~~~~~-------------~~~~~~~~~~~l~~-----~~~~~vLdvG~G~G~~~~~~~ 62 (241)
++.+..+||..+..|+.. .+.+..+. .....+.+++.+.. .++.+|||+|||+|..+
T Consensus 58 ~~~i~~~Yd~~~~~~e~~~g~~~h~g~~~~~~~~~~~~~aq~~~~~~~l~~~~~~~~~~~~~~~VLDiGCG~G~~~---- 133 (340)
T PLN02244 58 KEGIAEFYDESSGVWEDVWGEHMHHGYYDPGASRGDHRQAQIRMIEESLAWAGVPDDDEKRPKRIVDVGCGIGGSS---- 133 (340)
T ss_pred HHHHHHHHccchHHHHHHhCCcceeeccCCCCCcccHHHHHHHHHHHHHHhcCCCcccCCCCCeEEEecCCCCHHH----
Confidence 446677777777666542 11221111 11233445555554 67789999999999988
Q ss_pred HHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCCccccccccceecceeeeeec
Q psy1420 63 VLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRI 142 (241)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (241)
..+.. ....+++++|+++.+++.+++++.
T Consensus 134 ---------~~La~------------------~~g~~v~gvD~s~~~i~~a~~~~~------------------------ 162 (340)
T PLN02244 134 ---------RYLAR------------------KYGANVKGITLSPVQAARANALAA------------------------ 162 (340)
T ss_pred ---------HHHHH------------------hcCCEEEEEECCHHHHHHHHHHHH------------------------
Confidence 44433 124689999999999999998877
Q ss_pred cccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHHHHHHhccCCcEEEEEecC---------------
Q psy1420 143 DKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFS--------------- 207 (241)
Q Consensus 143 ~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~--------------- 207 (241)
..++. ++++++.+|+.++|+++++||+|++..+++|++++.+++++++++|||||++++.++.
T Consensus 163 -~~g~~-~~v~~~~~D~~~~~~~~~~FD~V~s~~~~~h~~d~~~~l~e~~rvLkpGG~lvi~~~~~~~~~~~~~~l~~~~ 240 (340)
T PLN02244 163 -AQGLS-DKVSFQVADALNQPFEDGQFDLVWSMESGEHMPDKRKFVQELARVAAPGGRIIIVTWCHRDLEPGETSLKPDE 240 (340)
T ss_pred -hcCCC-CceEEEEcCcccCCCCCCCccEEEECCchhccCCHHHHHHHHHHHcCCCcEEEEEEecccccccccccCCHHH
Confidence 44544 4689999999999988889999999999999999999999999999999999986532
Q ss_pred ------------------HHHHHHHHHHCCCceEEEEEecCce
Q psy1420 208 ------------------HEEFKSMIESAGFQYVTYENLTFGV 232 (241)
Q Consensus 208 ------------------~~~~~~~l~~~Gf~~~~~~~~~~~~ 232 (241)
.+++.++++++||..++.++++..+
T Consensus 241 ~~~~~~i~~~~~~p~~~s~~~~~~~l~~aGf~~v~~~d~s~~v 283 (340)
T PLN02244 241 QKLLDKICAAYYLPAWCSTSDYVKLAESLGLQDIKTEDWSEHV 283 (340)
T ss_pred HHHHHHHHhhccCCCCCCHHHHHHHHHHCCCCeeEeeeCcHHH
Confidence 1688899999999999999886443
No 10
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.75 E-value=2.5e-17 Score=143.24 Aligned_cols=151 Identities=19% Similarity=0.293 Sum_probs=121.1
Q ss_pred cchHHHHHhhhhhccccchhhhhhhhHHHHHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhh
Q psy1420 2 KLPMYEVFENVAKSYDTMNDAMSFGIHRLWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQL 81 (241)
Q Consensus 2 ~~~~~~~f~~~~~~yd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (241)
|+.+...|+..+..|+... ..++...+.+++.+...++.+|||+|||+|..+ ..+..
T Consensus 6 k~~i~~~F~~aa~~Y~~~~-----~~q~~~a~~l~~~l~~~~~~~vLDiGcG~G~~~-------------~~l~~----- 62 (251)
T PRK10258 6 KQAIAAAFGRAAAHYEQHA-----ELQRQSADALLAMLPQRKFTHVLDAGCGPGWMS-------------RYWRE----- 62 (251)
T ss_pred HHHHHHHHHHHHHhHhHHH-----HHHHHHHHHHHHhcCccCCCeEEEeeCCCCHHH-------------HHHHH-----
Confidence 4578899999999998752 234556666777777666789999999999877 33322
Q ss_pred hhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCC
Q psy1420 82 IAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEE 161 (241)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 161 (241)
....++++|+|+.+++.++++.. ...++++|++.
T Consensus 63 --------------~~~~v~~~D~s~~~l~~a~~~~~--------------------------------~~~~~~~d~~~ 96 (251)
T PRK10258 63 --------------RGSQVTALDLSPPMLAQARQKDA--------------------------------ADHYLAGDIES 96 (251)
T ss_pred --------------cCCeEEEEECCHHHHHHHHhhCC--------------------------------CCCEEEcCccc
Confidence 35689999999999999887643 24578899998
Q ss_pred CCCCCCceeEEeeeehhhccccHHHHHHHHHHhccCCcEEEEEecCH-------------------------HHHHHHHH
Q psy1420 162 LPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH-------------------------EEFKSMIE 216 (241)
Q Consensus 162 ~~~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~-------------------------~~~~~~l~ 216 (241)
+|+++++||+|+++..+++.+++..++.++.++|+|||.+++..+.. +++.+++.
T Consensus 97 ~~~~~~~fD~V~s~~~l~~~~d~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~el~~~~~~~~~~~~~~~~~~~~~l~~~l~ 176 (251)
T PRK10258 97 LPLATATFDLAWSNLAVQWCGNLSTALRELYRVVRPGGVVAFTTLVQGSLPELHQAWQAVDERPHANRFLPPDAIEQALN 176 (251)
T ss_pred CcCCCCcEEEEEECchhhhcCCHHHHHHHHHHHcCCCeEEEEEeCCCCchHHHHHHHHHhccCCccccCCCHHHHHHHHH
Confidence 88888899999999999999999999999999999999999886443 66777777
Q ss_pred HCCCc
Q psy1420 217 SAGFQ 221 (241)
Q Consensus 217 ~~Gf~ 221 (241)
..++.
T Consensus 177 ~~~~~ 181 (251)
T PRK10258 177 GWRYQ 181 (251)
T ss_pred hCCce
Confidence 77765
No 11
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.75 E-value=1.8e-17 Score=144.88 Aligned_cols=161 Identities=18% Similarity=0.319 Sum_probs=120.1
Q ss_pred HHHhhhhhccccchhhhhhhhHH--H-H--HHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhh
Q psy1420 7 EVFENVAKSYDTMNDAMSFGIHR--L-W--KDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQL 81 (241)
Q Consensus 7 ~~f~~~~~~yd~~~~~~~~~~~~--~-~--~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (241)
.-||.++..|+..--....|..+ . + .+.+++.+. .++.+|||+|||+|..+ ..++.
T Consensus 4 ~~fd~~a~~f~~~~y~~~~g~~r~~~~~~~~~~~l~~l~-~~~~~vLDiGcG~G~~a-------------~~la~----- 64 (255)
T PRK11036 4 RNFDDIAEKFSRNIYGTTKGQIRQAILWQDLDRLLAELP-PRPLRVLDAGGGEGQTA-------------IKLAE----- 64 (255)
T ss_pred CChhhHHHHHHHhccCCCccHHHHHHHHHHHHHHHHhcC-CCCCEEEEeCCCchHHH-------------HHHHH-----
Confidence 45777787776632111111111 1 1 234455554 45679999999999988 44444
Q ss_pred hhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCC
Q psy1420 82 IAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEE 161 (241)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 161 (241)
...+++++|+|+.+++.+++++. ..++. ++++++++|+.+
T Consensus 65 --------------~g~~v~~vD~s~~~l~~a~~~~~-------------------------~~g~~-~~v~~~~~d~~~ 104 (255)
T PRK11036 65 --------------LGHQVILCDLSAEMIQRAKQAAE-------------------------AKGVS-DNMQFIHCAAQD 104 (255)
T ss_pred --------------cCCEEEEEECCHHHHHHHHHHHH-------------------------hcCCc-cceEEEEcCHHH
Confidence 35689999999999999998887 44543 468899999877
Q ss_pred CC-CCCCceeEEeeeehhhccccHHHHHHHHHHhccCCcEEEEEecC---------------------------------
Q psy1420 162 LP-IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFS--------------------------------- 207 (241)
Q Consensus 162 ~~-~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~--------------------------------- 207 (241)
++ ...++||+|++..++++++++..+++++.++|||||++++..+.
T Consensus 105 l~~~~~~~fD~V~~~~vl~~~~~~~~~l~~~~~~LkpgG~l~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 184 (255)
T PRK11036 105 IAQHLETPVDLILFHAVLEWVADPKSVLQTLWSVLRPGGALSLMFYNANGLLMHNMVAGNFDYVQAGMPKRKKRTLSPDY 184 (255)
T ss_pred HhhhcCCCCCEEEehhHHHhhCCHHHHHHHHHHHcCCCeEEEEEEECccHHHHHHHHccChHHHHhcCccccccCCCCCC
Confidence 63 44678999999999999999999999999999999999875322
Q ss_pred ---HHHHHHHHHHCCCceEEEE
Q psy1420 208 ---HEEFKSMIESAGFQYVTYE 226 (241)
Q Consensus 208 ---~~~~~~~l~~~Gf~~~~~~ 226 (241)
.+++.++++++||+++...
T Consensus 185 ~~~~~~l~~~l~~aGf~~~~~~ 206 (255)
T PRK11036 185 PLDPEQVYQWLEEAGWQIMGKT 206 (255)
T ss_pred CCCHHHHHHHHHHCCCeEeeee
Confidence 1788999999999988665
No 12
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.75 E-value=3.3e-17 Score=148.02 Aligned_cols=129 Identities=15% Similarity=0.188 Sum_probs=106.6
Q ss_pred CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCC
Q psy1420 42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP 121 (241)
Q Consensus 42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~ 121 (241)
.++.+|||+|||+|..+ ..+.. .+..++++|+++.+++.++.+..
T Consensus 130 ~~g~~ILDIGCG~G~~s-------------~~La~-------------------~g~~V~GID~s~~~i~~Ar~~~~--- 174 (322)
T PLN02396 130 FEGLKFIDIGCGGGLLS-------------EPLAR-------------------MGATVTGVDAVDKNVKIARLHAD--- 174 (322)
T ss_pred CCCCEEEEeeCCCCHHH-------------HHHHH-------------------cCCEEEEEeCCHHHHHHHHHHHH---
Confidence 45679999999999987 33333 35689999999999999987765
Q ss_pred CccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHHHHHHhccCCcEE
Q psy1420 122 IESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRF 201 (241)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l 201 (241)
..... .++.++++++++++.+.++||+|++..+++|++++..+++++.++|||||.+
T Consensus 175 ----------------------~~~~~-~~i~~~~~dae~l~~~~~~FD~Vi~~~vLeHv~d~~~~L~~l~r~LkPGG~l 231 (322)
T PLN02396 175 ----------------------MDPVT-STIEYLCTTAEKLADEGRKFDAVLSLEVIEHVANPAEFCKSLSALTIPNGAT 231 (322)
T ss_pred ----------------------hcCcc-cceeEEecCHHHhhhccCCCCEEEEhhHHHhcCCHHHHHHHHHHHcCCCcEE
Confidence 22221 3688999999988877789999999999999999999999999999999999
Q ss_pred EEEecC--------------------------------HHHHHHHHHHCCCceEEEEEe
Q psy1420 202 LCLEFS--------------------------------HEEFKSMIESAGFQYVTYENL 228 (241)
Q Consensus 202 ~i~~~~--------------------------------~~~~~~~l~~~Gf~~~~~~~~ 228 (241)
++.+.. .+++..+++++||+++++.-+
T Consensus 232 iist~nr~~~~~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL~~aGf~i~~~~G~ 290 (322)
T PLN02396 232 VLSTINRTMRAYASTIVGAEYILRWLPKGTHQWSSFVTPEELSMILQRASVDVKEMAGF 290 (322)
T ss_pred EEEECCcCHHHHHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHHHHcCCeEEEEeee
Confidence 987521 188999999999999887544
No 13
>KOG4300|consensus
Probab=99.73 E-value=8.9e-17 Score=134.81 Aligned_cols=143 Identities=23% Similarity=0.347 Sum_probs=118.8
Q ss_pred hhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHH
Q psy1420 37 DRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEAN 116 (241)
Q Consensus 37 ~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~ 116 (241)
..+.......+||+|||||.+- ++.+ -++...++++|+++.|.+.+.+.
T Consensus 70 ~~~gk~~K~~vLEvgcGtG~Nf--------------kfy~-----------------~~p~~svt~lDpn~~mee~~~ks 118 (252)
T KOG4300|consen 70 YFLGKSGKGDVLEVGCGTGANF--------------KFYP-----------------WKPINSVTCLDPNEKMEEIADKS 118 (252)
T ss_pred HHhcccCccceEEecccCCCCc--------------cccc-----------------CCCCceEEEeCCcHHHHHHHHHH
Confidence 3455555567899999999986 2222 13578999999999999999998
Q ss_pred HhcCCCccccccccceecceeeeeeccccCCCCCCee-EEecccCCCC-CCCCceeEEeeeehhhccccHHHHHHHHHHh
Q psy1420 117 AEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLR-FLEANAEELP-IESDSYSAYTIAFGIRNVTRIDKALSEAYRV 194 (241)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~d~~~~~-~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~ 194 (241)
+. .. .+ .++. ++.++.+++| .++.+||.|++.+++..++++.+.|+++.|+
T Consensus 119 ~~-------------------------E~-k~-~~~~~fvva~ge~l~~l~d~s~DtVV~TlvLCSve~~~k~L~e~~rl 171 (252)
T KOG4300|consen 119 AA-------------------------EK-KP-LQVERFVVADGENLPQLADGSYDTVVCTLVLCSVEDPVKQLNEVRRL 171 (252)
T ss_pred Hh-------------------------hc-cC-cceEEEEeechhcCcccccCCeeeEEEEEEEeccCCHHHHHHHHHHh
Confidence 87 22 12 3455 8999999998 7889999999999999999999999999999
Q ss_pred ccCCcEEEEEecCH----------------------------HHHHHHHHHCCCceEEEEEecCceeEEEe
Q psy1420 195 LKPGGRFLCLEFSH----------------------------EEFKSMIESAGFQYVTYENLTFGVVAIHS 237 (241)
Q Consensus 195 LkpgG~l~i~~~~~----------------------------~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~ 237 (241)
|+|||+++++++.. .+..+.++.+-|...+.++.++|.--.++
T Consensus 172 LRpgG~iifiEHva~~y~~~n~i~q~v~ep~~~~~~dGC~ltrd~~e~Leda~f~~~~~kr~~~~ttw~~V 242 (252)
T KOG4300|consen 172 LRPGGRIIFIEHVAGEYGFWNRILQQVAEPLWHLESDGCVLTRDTGELLEDAEFSIDSCKRFNFGTTWVIV 242 (252)
T ss_pred cCCCcEEEEEecccccchHHHHHHHHHhchhhheeccceEEehhHHHHhhhcccccchhhcccCCceEEEE
Confidence 99999999998766 77888999999999999999888766544
No 14
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.70 E-value=3.3e-16 Score=137.82 Aligned_cols=138 Identities=15% Similarity=0.288 Sum_probs=113.6
Q ss_pred HHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHH
Q psy1420 32 KDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLR 111 (241)
Q Consensus 32 ~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~ 111 (241)
...++..+..+++.+|||+|||+|..+ ..++. ....+++++|+++.+++
T Consensus 41 ~~~~l~~l~l~~~~~VLDiGcG~G~~a-------------~~la~------------------~~~~~v~giD~s~~~~~ 89 (263)
T PTZ00098 41 TTKILSDIELNENSKVLDIGSGLGGGC-------------KYINE------------------KYGAHVHGVDICEKMVN 89 (263)
T ss_pred HHHHHHhCCCCCCCEEEEEcCCCChhh-------------HHHHh------------------hcCCEEEEEECCHHHHH
Confidence 456667778889999999999999987 33322 12458999999999999
Q ss_pred HHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccc--cHHHHHH
Q psy1420 112 FLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVT--RIDKALS 189 (241)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~--~~~~~l~ 189 (241)
.++++.. . ..++.+.+.|+...|+++++||+|++..+++|++ ++..+++
T Consensus 90 ~a~~~~~-------------------------~----~~~i~~~~~D~~~~~~~~~~FD~V~s~~~l~h~~~~d~~~~l~ 140 (263)
T PTZ00098 90 IAKLRNS-------------------------D----KNKIEFEANDILKKDFPENTFDMIYSRDAILHLSYADKKKLFE 140 (263)
T ss_pred HHHHHcC-------------------------c----CCceEEEECCcccCCCCCCCeEEEEEhhhHHhCCHHHHHHHHH
Confidence 9988765 2 1368899999988888888999999988887775 7889999
Q ss_pred HHHHhccCCcEEEEEecCH------------------------HHHHHHHHHCCCceEEEEEec
Q psy1420 190 EAYRVLKPGGRFLCLEFSH------------------------EEFKSMIESAGFQYVTYENLT 229 (241)
Q Consensus 190 ~~~~~LkpgG~l~i~~~~~------------------------~~~~~~l~~~Gf~~~~~~~~~ 229 (241)
+++++|||||++++.++.. +++.++++++||+.+..++++
T Consensus 141 ~i~r~LkPGG~lvi~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~d~~ 204 (263)
T PTZ00098 141 KCYKWLKPNGILLITDYCADKIENWDEEFKAYIKKRKYTLIPIQEYGDLIKSCNFQNVVAKDIS 204 (263)
T ss_pred HHHHHcCCCcEEEEEEeccccccCcHHHHHHHHHhcCCCCCCHHHHHHHHHHCCCCeeeEEeCc
Confidence 9999999999999986421 788999999999999988764
No 15
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.68 E-value=7.3e-16 Score=140.06 Aligned_cols=160 Identities=22% Similarity=0.306 Sum_probs=120.6
Q ss_pred HHhhhhhccccchhhhhhhhHHHHHHHHHhhcCC-CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCC
Q psy1420 8 VFENVAKSYDTMNDAMSFGIHRLWKDIFIDRLGP-THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQW 86 (241)
Q Consensus 8 ~f~~~~~~yd~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (241)
.|+.++..||.+.+. ..+...+++.+++.... .++.+|||+|||+|..+ ..++. ..
T Consensus 79 ~y~~lA~~YD~~~~~--~~~~e~~r~~~l~~~~l~~~~~~VLDLGcGtG~~~-------------l~La~----~~---- 135 (340)
T PLN02490 79 FYRFLSIVYDHIINP--GHWTEDMRDDALEPADLSDRNLKVVDVGGGTGFTT-------------LGIVK----HV---- 135 (340)
T ss_pred EccceeeecCCCeec--CcchHHHHHHHHhhcccCCCCCEEEEEecCCcHHH-------------HHHHH----HC----
Confidence 456667777764211 11223344445555443 46789999999999977 33322 10
Q ss_pred CcchhhhcccCCCceeecCChHhHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCC
Q psy1420 87 KPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIES 166 (241)
Q Consensus 87 ~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 166 (241)
....++++|+++.+++.++++.. . .+++++.+|+..+++++
T Consensus 136 ---------~~~~VtgVD~S~~mL~~A~~k~~-------------------------~-----~~i~~i~gD~e~lp~~~ 176 (340)
T PLN02490 136 ---------DAKNVTILDQSPHQLAKAKQKEP-------------------------L-----KECKIIEGDAEDLPFPT 176 (340)
T ss_pred ---------CCCEEEEEECCHHHHHHHHHhhh-------------------------c-----cCCeEEeccHHhCCCCC
Confidence 23579999999999999887643 1 25778999999988888
Q ss_pred CceeEEeeeehhhccccHHHHHHHHHHhccCCcEEEEEec-------------------CHHHHHHHHHHCCCceEEEEE
Q psy1420 167 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEF-------------------SHEEFKSMIESAGFQYVTYEN 227 (241)
Q Consensus 167 ~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~-------------------~~~~~~~~l~~~Gf~~~~~~~ 227 (241)
++||+|+++.++++++++...+++++++|||||++++.+. +.+++.++++++||+.+++.+
T Consensus 177 ~sFDvVIs~~~L~~~~d~~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL~~aGF~~V~i~~ 256 (340)
T PLN02490 177 DYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFTKAGFKDVKLKR 256 (340)
T ss_pred CceeEEEEcChhhhCCCHHHHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhhhccCCCHHHHHHHHHHCCCeEEEEEE
Confidence 8999999999999999999999999999999999987642 228889999999999998887
Q ss_pred ec
Q psy1420 228 LT 229 (241)
Q Consensus 228 ~~ 229 (241)
+.
T Consensus 257 i~ 258 (340)
T PLN02490 257 IG 258 (340)
T ss_pred cC
Confidence 63
No 16
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=99.66 E-value=7.4e-16 Score=125.99 Aligned_cols=115 Identities=26% Similarity=0.446 Sum_probs=100.9
Q ss_pred eeecCChHhHHHHHHHHhcCCCccccccccceecceeeeeeccccCC-CCCCeeEEecccCCCCCCCCceeEEeeeehhh
Q psy1420 101 NQIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDI-PNPRLRFLEANAEELPIESDSYSAYTIAFGIR 179 (241)
Q Consensus 101 ~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~ 179 (241)
.|+|+|+.|++.|+++.. .... ...+++++++|+.++|+++++||+|++.++++
T Consensus 1 ~GvD~S~~ML~~A~~~~~-------------------------~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~ 55 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQS-------------------------LKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLR 55 (160)
T ss_pred CeEcCCHHHHHHHHHhhh-------------------------cccccCCCceEEEEechhhCCCCCCCeeEEEecchhh
Confidence 489999999999987654 1111 01368999999999999888999999999999
Q ss_pred ccccHHHHHHHHHHhccCCcEEEEEecCH--------------------------------------------HHHHHHH
Q psy1420 180 NVTRIDKALSEAYRVLKPGGRFLCLEFSH--------------------------------------------EEFKSMI 215 (241)
Q Consensus 180 ~~~~~~~~l~~~~~~LkpgG~l~i~~~~~--------------------------------------------~~~~~~l 215 (241)
+++++..++++++|+|||||.+++.+++. +++.+++
T Consensus 56 ~~~d~~~~l~ei~rvLkpGG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~yl~~si~~f~~~~el~~ll 135 (160)
T PLN02232 56 NVVDRLRAMKEMYRVLKPGSRVSILDFNKSNQSVTTFMQGWMIDNVVVPVATVYDLAKEYEYLKYSINGYLTGEELETLA 135 (160)
T ss_pred cCCCHHHHHHHHHHHcCcCeEEEEEECCCCChHHHHHHHHHHccchHhhhhHHhCChHHHHhHHHHHHHCcCHHHHHHHH
Confidence 99999999999999999999999987643 8899999
Q ss_pred HHCCCceEEEEEecCceeEEEeeec
Q psy1420 216 ESAGFQYVTYENLTFGVVAIHSGFK 240 (241)
Q Consensus 216 ~~~Gf~~~~~~~~~~~~~~~~~~~~ 240 (241)
+++||+.++.....+|++++|+|.|
T Consensus 136 ~~aGF~~~~~~~~~~g~~~~~~~~~ 160 (160)
T PLN02232 136 LEAGFSSACHYEISGGFMGNLVAMR 160 (160)
T ss_pred HHcCCCcceEEECcchHhHeeEeeC
Confidence 9999999999999999999999975
No 17
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.66 E-value=1.5e-15 Score=143.57 Aligned_cols=139 Identities=22% Similarity=0.306 Sum_probs=113.8
Q ss_pred HHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHH
Q psy1420 32 KDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLR 111 (241)
Q Consensus 32 ~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~ 111 (241)
.+.+++.+...++.+|||+|||+|..+ ..+.. .....++++|+|+.+++
T Consensus 255 te~l~~~~~~~~~~~vLDiGcG~G~~~-------------~~la~------------------~~~~~v~gvDiS~~~l~ 303 (475)
T PLN02336 255 TKEFVDKLDLKPGQKVLDVGCGIGGGD-------------FYMAE------------------NFDVHVVGIDLSVNMIS 303 (475)
T ss_pred HHHHHHhcCCCCCCEEEEEeccCCHHH-------------HHHHH------------------hcCCEEEEEECCHHHHH
Confidence 455666666677889999999999877 33332 12457999999999999
Q ss_pred HHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHHHH
Q psy1420 112 FLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEA 191 (241)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~~ 191 (241)
.++++.. . .. .++++..+|+...++++++||+|++..+++|++++..+++++
T Consensus 304 ~A~~~~~-------------------------~--~~-~~v~~~~~d~~~~~~~~~~fD~I~s~~~l~h~~d~~~~l~~~ 355 (475)
T PLN02336 304 FALERAI-------------------------G--RK-CSVEFEVADCTKKTYPDNSFDVIYSRDTILHIQDKPALFRSF 355 (475)
T ss_pred HHHHHhh-------------------------c--CC-CceEEEEcCcccCCCCCCCEEEEEECCcccccCCHHHHHHHH
Confidence 9987765 1 11 368899999998887778999999999999999999999999
Q ss_pred HHhccCCcEEEEEecCH-----------------------HHHHHHHHHCCCceEEEEEec
Q psy1420 192 YRVLKPGGRFLCLEFSH-----------------------EEFKSMIESAGFQYVTYENLT 229 (241)
Q Consensus 192 ~~~LkpgG~l~i~~~~~-----------------------~~~~~~l~~~Gf~~~~~~~~~ 229 (241)
+++|||||++++.++.. +++.++++++||.++..++++
T Consensus 356 ~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~aGF~~i~~~d~~ 416 (475)
T PLN02336 356 FKWLKPGGKVLISDYCRSPGTPSPEFAEYIKQRGYDLHDVQAYGQMLKDAGFDDVIAEDRT 416 (475)
T ss_pred HHHcCCCeEEEEEEeccCCCCCcHHHHHHHHhcCCCCCCHHHHHHHHHHCCCeeeeeecch
Confidence 99999999999876422 778999999999998887654
No 18
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.65 E-value=2.2e-15 Score=136.33 Aligned_cols=139 Identities=21% Similarity=0.248 Sum_probs=107.6
Q ss_pred HHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHH
Q psy1420 33 DIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRF 112 (241)
Q Consensus 33 ~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~ 112 (241)
+.+...+.+.++.+|||+|||+|..+ ..++. .....++|+|+|+.++..
T Consensus 112 ~~l~~~l~~l~g~~VLDIGCG~G~~~-------------~~la~------------------~g~~~V~GiD~S~~~l~q 160 (322)
T PRK15068 112 DRVLPHLSPLKGRTVLDVGCGNGYHM-------------WRMLG------------------AGAKLVVGIDPSQLFLCQ 160 (322)
T ss_pred HHHHHhhCCCCCCEEEEeccCCcHHH-------------HHHHH------------------cCCCEEEEEcCCHHHHHH
Confidence 34455666667889999999999988 44444 122359999999998865
Q ss_pred HHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHHHHH
Q psy1420 113 LEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAY 192 (241)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~~~ 192 (241)
+..... ..+.. .++.++.++++.+|. .++||+|+|..+++|..++...+++++
T Consensus 161 ~~a~~~-------------------------~~~~~-~~i~~~~~d~e~lp~-~~~FD~V~s~~vl~H~~dp~~~L~~l~ 213 (322)
T PRK15068 161 FEAVRK-------------------------LLGND-QRAHLLPLGIEQLPA-LKAFDTVFSMGVLYHRRSPLDHLKQLK 213 (322)
T ss_pred HHHHHH-------------------------hcCCC-CCeEEEeCCHHHCCC-cCCcCEEEECChhhccCCHHHHHHHHH
Confidence 543322 11111 368899999999887 678999999999999999999999999
Q ss_pred HhccCCcEEEEEec--------------------------CHHHHHHHHHHCCCceEEEEEec
Q psy1420 193 RVLKPGGRFLCLEF--------------------------SHEEFKSMIESAGFQYVTYENLT 229 (241)
Q Consensus 193 ~~LkpgG~l~i~~~--------------------------~~~~~~~~l~~~Gf~~~~~~~~~ 229 (241)
+.|+|||.+++.++ +.+++.++++++||+.+++...+
T Consensus 214 ~~LkpGG~lvl~~~~i~~~~~~~l~p~~~y~~~~~~~~lps~~~l~~~L~~aGF~~i~~~~~~ 276 (322)
T PRK15068 214 DQLVPGGELVLETLVIDGDENTVLVPGDRYAKMRNVYFIPSVPALKNWLERAGFKDVRIVDVS 276 (322)
T ss_pred HhcCCCcEEEEEEEEecCCCccccCchhHHhcCccceeCCCHHHHHHHHHHcCCceEEEEeCC
Confidence 99999999987532 11688999999999999887653
No 19
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.65 E-value=2e-15 Score=131.84 Aligned_cols=129 Identities=11% Similarity=0.119 Sum_probs=101.8
Q ss_pred HHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHH
Q psy1420 33 DIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRF 112 (241)
Q Consensus 33 ~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~ 112 (241)
..+++.+...++.+|||+|||+|.++ ..+.. .. +..+++++|+|+.|++.
T Consensus 19 ~~ll~~l~~~~~~~vLDlGcG~G~~~-------------~~l~~----~~-------------p~~~v~gvD~s~~~~~~ 68 (255)
T PRK14103 19 YDLLARVGAERARRVVDLGCGPGNLT-------------RYLAR----RW-------------PGAVIEALDSSPEMVAA 68 (255)
T ss_pred HHHHHhCCCCCCCEEEEEcCCCCHHH-------------HHHHH----HC-------------CCCEEEEEECCHHHHHH
Confidence 45667777778889999999999988 43333 10 24579999999999998
Q ss_pred HHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHHHHH
Q psy1420 113 LEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAY 192 (241)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~~~ 192 (241)
+++. ++++.++|+..++ +.++||+|+++.++++++++.+++++++
T Consensus 69 a~~~----------------------------------~~~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~d~~~~l~~~~ 113 (255)
T PRK14103 69 ARER----------------------------------GVDARTGDVRDWK-PKPDTDVVVSNAALQWVPEHADLLVRWV 113 (255)
T ss_pred HHhc----------------------------------CCcEEEcChhhCC-CCCCceEEEEehhhhhCCCHHHHHHHHH
Confidence 8532 3567888887764 4568999999999999999999999999
Q ss_pred HhccCCcEEEEEec------------------------------------CHHHHHHHHHHCCCceEEEE
Q psy1420 193 RVLKPGGRFLCLEF------------------------------------SHEEFKSMIESAGFQYVTYE 226 (241)
Q Consensus 193 ~~LkpgG~l~i~~~------------------------------------~~~~~~~~l~~~Gf~~~~~~ 226 (241)
++|||||++++... +.+++.++++++||++...+
T Consensus 114 ~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~v~~~~ 183 (255)
T PRK14103 114 DELAPGSWIAVQVPGNFDAPSHAAVRALARREPWAKLLRDIPFRVGAVVQTPAGYAELLTDAGCKVDAWE 183 (255)
T ss_pred HhCCCCcEEEEEcCCCcCChhHHHHHHHhccCchhHHhcccccccCcCCCCHHHHHHHHHhCCCeEEEEe
Confidence 99999999987421 11778889999999755444
No 20
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.65 E-value=5.5e-16 Score=124.38 Aligned_cols=124 Identities=21% Similarity=0.325 Sum_probs=95.5
Q ss_pred HHHHHhhcC-CCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhH
Q psy1420 32 KDIFIDRLG-PTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRL 110 (241)
Q Consensus 32 ~~~~~~~l~-~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~ 110 (241)
.+.+..... ..++.+|||+|||+|.++ ..+.+ ...+++++|+++.++
T Consensus 10 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~-------------~~l~~-------------------~~~~~~g~D~~~~~~ 57 (161)
T PF13489_consen 10 ADLLERLLPRLKPGKRVLDIGCGTGSFL-------------RALAK-------------------RGFEVTGVDISPQMI 57 (161)
T ss_dssp HHHHHHHHTCTTTTSEEEEESSTTSHHH-------------HHHHH-------------------TTSEEEEEESSHHHH
T ss_pred HHHHHHHhcccCCCCEEEEEcCCCCHHH-------------HHHHH-------------------hCCEEEEEECCHHHH
Confidence 344444443 467889999999999887 44433 345899999999998
Q ss_pred HHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHHH
Q psy1420 111 RFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSE 190 (241)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~ 190 (241)
+. . .......+....+.+.++||+|+|+.+++|++++..+|++
T Consensus 58 ~~-----~--------------------------------~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~d~~~~l~~ 100 (161)
T PF13489_consen 58 EK-----R--------------------------------NVVFDNFDAQDPPFPDGSFDLIICNDVLEHLPDPEEFLKE 100 (161)
T ss_dssp HH-----T--------------------------------TSEEEEEECHTHHCHSSSEEEEEEESSGGGSSHHHHHHHH
T ss_pred hh-----h--------------------------------hhhhhhhhhhhhhccccchhhHhhHHHHhhcccHHHHHHH
Confidence 88 1 1122223223333456799999999999999999999999
Q ss_pred HHHhccCCcEEEEEecCH--------------------------HHHHHHHHHCCCceEE
Q psy1420 191 AYRVLKPGGRFLCLEFSH--------------------------EEFKSMIESAGFQYVT 224 (241)
Q Consensus 191 ~~~~LkpgG~l~i~~~~~--------------------------~~~~~~l~~~Gf~~~~ 224 (241)
++++|||||++++.+... ++++++++++||++++
T Consensus 101 l~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~G~~iv~ 160 (161)
T PF13489_consen 101 LSRLLKPGGYLVISDPNRDDPSPRSFLKWRYDRPYGGHVHFFSPDELRQLLEQAGFEIVE 160 (161)
T ss_dssp HHHCEEEEEEEEEEEEBTTSHHHHHHHHCCGTCHHTTTTEEBBHHHHHHHHHHTTEEEEE
T ss_pred HHHhcCCCCEEEEEEcCCcchhhhHHHhcCCcCccCceeccCCHHHHHHHHHHCCCEEEE
Confidence 999999999999987642 8999999999999875
No 21
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.64 E-value=8.5e-16 Score=112.39 Aligned_cols=95 Identities=28% Similarity=0.417 Sum_probs=79.4
Q ss_pred EEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCCccccc
Q psy1420 48 LDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIESDSY 127 (241)
Q Consensus 48 LdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~ 127 (241)
||+|||+|..+ ..+.. .....++++|+++.+++.++++..
T Consensus 1 LdiG~G~G~~~-------------~~l~~------------------~~~~~v~~~D~~~~~~~~~~~~~~--------- 40 (95)
T PF08241_consen 1 LDIGCGTGRFA-------------AALAK------------------RGGASVTGIDISEEMLEQARKRLK--------- 40 (95)
T ss_dssp EEET-TTSHHH-------------HHHHH------------------TTTCEEEEEES-HHHHHHHHHHTT---------
T ss_pred CEecCcCCHHH-------------HHHHh------------------ccCCEEEEEeCCHHHHHHHHhccc---------
Confidence 79999999988 44444 126789999999999999998876
Q ss_pred cccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHHHHHHhccCCcEEEE
Q psy1420 128 SAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLC 203 (241)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i 203 (241)
. .++.+...|+..+|+++++||+|++..++++++++.++++++.|+|||||++++
T Consensus 41 ----------------~-----~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 41 ----------------N-----EGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHLEDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp ----------------T-----STEEEEESBTTSSSS-TT-EEEEEEESHGGGSSHHHHHHHHHHHHEEEEEEEEE
T ss_pred ----------------c-----cCchheeehHHhCccccccccccccccceeeccCHHHHHHHHHHHcCcCeEEeC
Confidence 2 246699999999999999999999999999999999999999999999999975
No 22
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.64 E-value=5.5e-16 Score=133.08 Aligned_cols=128 Identities=17% Similarity=0.257 Sum_probs=108.4
Q ss_pred CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCC
Q psy1420 42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP 121 (241)
Q Consensus 42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~ 121 (241)
-++.+|||+|||.|.++ ..++. .+..|+++|.++.+++.|+..+.
T Consensus 58 l~g~~vLDvGCGgG~Ls-------------e~mAr-------------------~Ga~VtgiD~se~~I~~Ak~ha~--- 102 (243)
T COG2227 58 LPGLRVLDVGCGGGILS-------------EPLAR-------------------LGASVTGIDASEKPIEVAKLHAL--- 102 (243)
T ss_pred CCCCeEEEecCCccHhh-------------HHHHH-------------------CCCeeEEecCChHHHHHHHHhhh---
Confidence 47889999999999988 55544 46899999999999999998887
Q ss_pred CccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHHHHHHhccCCcEE
Q psy1420 122 IESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRF 201 (241)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l 201 (241)
..++. +++.+.+++++....++||+|+|..+++|+++++.+++.+.+++||||.+
T Consensus 103 ----------------------e~gv~---i~y~~~~~edl~~~~~~FDvV~cmEVlEHv~dp~~~~~~c~~lvkP~G~l 157 (243)
T COG2227 103 ----------------------ESGVN---IDYRQATVEDLASAGGQFDVVTCMEVLEHVPDPESFLRACAKLVKPGGIL 157 (243)
T ss_pred ----------------------hcccc---ccchhhhHHHHHhcCCCccEEEEhhHHHccCCHHHHHHHHHHHcCCCcEE
Confidence 55544 66888888887655589999999999999999999999999999999999
Q ss_pred EEEecCH--------------------------------HHHHHHHHHCCCceEEEEEec
Q psy1420 202 LCLEFSH--------------------------------EEFKSMIESAGFQYVTYENLT 229 (241)
Q Consensus 202 ~i~~~~~--------------------------------~~~~~~l~~~Gf~~~~~~~~~ 229 (241)
++++... +++..++..+|+.+.....++
T Consensus 158 f~STinrt~ka~~~~i~~ae~vl~~vP~gTH~~~k~irp~El~~~~~~~~~~~~~~~g~~ 217 (243)
T COG2227 158 FLSTINRTLKAYLLAIIGAEYVLRIVPKGTHDYRKFIKPAELIRWLLGANLKIIDRKGLT 217 (243)
T ss_pred EEeccccCHHHHHHHHHHHHHHHHhcCCcchhHHHhcCHHHHHHhcccCCceEEeecceE
Confidence 9988655 788888888888877666543
No 23
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.64 E-value=5.1e-15 Score=130.27 Aligned_cols=131 Identities=27% Similarity=0.365 Sum_probs=106.7
Q ss_pred CCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcC
Q psy1420 41 PTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEEL 120 (241)
Q Consensus 41 ~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~ 120 (241)
.+++.+|||+|||+|..+ ..++..++ ...+++++|+++.+++.++++..
T Consensus 75 ~~~g~~VLDiG~G~G~~~-------------~~~a~~~g----------------~~~~v~gvD~s~~~l~~A~~~~~-- 123 (272)
T PRK11873 75 LKPGETVLDLGSGGGFDC-------------FLAARRVG----------------PTGKVIGVDMTPEMLAKARANAR-- 123 (272)
T ss_pred CCCCCEEEEeCCCCCHHH-------------HHHHHHhC----------------CCCEEEEECCCHHHHHHHHHHHH--
Confidence 467889999999999876 22222111 23579999999999999998877
Q ss_pred CCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHHHHHHhccCCcE
Q psy1420 121 PIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGR 200 (241)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~ 200 (241)
..++. ++++..+|+..+++++++||+|+++.++++.++..+.+++++++|||||+
T Consensus 124 -----------------------~~g~~--~v~~~~~d~~~l~~~~~~fD~Vi~~~v~~~~~d~~~~l~~~~r~LkpGG~ 178 (272)
T PRK11873 124 -----------------------KAGYT--NVEFRLGEIEALPVADNSVDVIISNCVINLSPDKERVFKEAFRVLKPGGR 178 (272)
T ss_pred -----------------------HcCCC--CEEEEEcchhhCCCCCCceeEEEEcCcccCCCCHHHHHHHHHHHcCCCcE
Confidence 44443 68889999998888778999999999999999999999999999999999
Q ss_pred EEEEec-------------------------CHHHHHHHHHHCCCceEEEEE
Q psy1420 201 FLCLEF-------------------------SHEEFKSMIESAGFQYVTYEN 227 (241)
Q Consensus 201 l~i~~~-------------------------~~~~~~~~l~~~Gf~~~~~~~ 227 (241)
+++.++ ..+++.++++++||..+++..
T Consensus 179 l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~aGf~~v~i~~ 230 (272)
T PRK11873 179 FAISDVVLRGELPEEIRNDAELYAGCVAGALQEEEYLAMLAEAGFVDITIQP 230 (272)
T ss_pred EEEEEeeccCCCCHHHHHhHHHHhccccCCCCHHHHHHHHHHCCCCceEEEe
Confidence 998653 126889999999999877644
No 24
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.63 E-value=1e-14 Score=124.43 Aligned_cols=170 Identities=15% Similarity=0.178 Sum_probs=122.9
Q ss_pred cchHHHHHhh--------hhhccccchhhhh--hhhHHHHHHHHHhhcC--CCCCCeEEEEecCCCcchhHHHHHHhhhh
Q psy1420 2 KLPMYEVFEN--------VAKSYDTMNDAMS--FGIHRLWKDIFIDRLG--PTHDTKLLDVAGGTDPLANLLFVLRAYDQ 69 (241)
Q Consensus 2 ~~~~~~~f~~--------~~~~yd~~~~~~~--~~~~~~~~~~~~~~l~--~~~~~~vLdvG~G~G~~~~~~~~~~~~~~ 69 (241)
++.+..+|+. +...|+..+..-+ ...+..+++.+++.+. ..++.+|||+|||+|..+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~----------- 70 (219)
T TIGR02021 2 KEQVRHYFDGTAFQRWARIYGSGDPVSRVRQTVREGRAAMRRKLLDWLPKDPLKGKRVLDAGCGTGLLS----------- 70 (219)
T ss_pred ccHHHHHhCchhHHHHHHhhCCchhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCCHHH-----------
Confidence 3566777777 4444554332221 1124455666666665 456789999999999988
Q ss_pred hhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCC
Q psy1420 70 YSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPN 149 (241)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (241)
..+.. ....++|+|+++.+++.++++.. ..+..
T Consensus 71 --~~la~-------------------~~~~v~gvD~s~~~i~~a~~~~~-------------------------~~~~~- 103 (219)
T TIGR02021 71 --IELAK-------------------RGAIVKAVDISEQMVQMARNRAQ-------------------------GRDVA- 103 (219)
T ss_pred --HHHHH-------------------CCCEEEEEECCHHHHHHHHHHHH-------------------------hcCCC-
Confidence 43333 34579999999999999998876 33322
Q ss_pred CCeeEEecccCCCCCCCCceeEEeeeehhhccc--cHHHHHHHHHHhccCCcEEEEEec---------------------
Q psy1420 150 PRLRFLEANAEELPIESDSYSAYTIAFGIRNVT--RIDKALSEAYRVLKPGGRFLCLEF--------------------- 206 (241)
Q Consensus 150 ~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~i~~~--------------------- 206 (241)
.++.+...|+..++ ++||+|++..++++++ +...+++++.+++++++.+.+...
T Consensus 104 ~~i~~~~~d~~~~~---~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (219)
T TIGR02021 104 GNVEFEVNDLLSLC---GEFDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFTFAPKTAWLAFLKMIGELFPGSSRAT 180 (219)
T ss_pred CceEEEECChhhCC---CCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEECCCchHHHHHHHHHhhCcCccccc
Confidence 36889999988775 6899999999888765 357889999999998877766322
Q ss_pred -----CHHHHHHHHHHCCCceEEEEEecCce
Q psy1420 207 -----SHEEFKSMIESAGFQYVTYENLTFGV 232 (241)
Q Consensus 207 -----~~~~~~~~l~~~Gf~~~~~~~~~~~~ 232 (241)
+.+++.++++++||+++.....+.|.
T Consensus 181 ~~~~~~~~~~~~~l~~~Gf~v~~~~~~~~~~ 211 (219)
T TIGR02021 181 SAYLHPMTDLERALGELGWKIVREGLVSTGF 211 (219)
T ss_pred ceEEecHHHHHHHHHHcCceeeeeecccccc
Confidence 11889999999999999988776654
No 25
>PRK08317 hypothetical protein; Provisional
Probab=99.63 E-value=1.5e-14 Score=122.96 Aligned_cols=142 Identities=23% Similarity=0.354 Sum_probs=113.4
Q ss_pred HHHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHh
Q psy1420 30 LWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPR 109 (241)
Q Consensus 30 ~~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~ 109 (241)
..++.+.+.+...++.+|||+|||+|.++ ..+...++ ...+++++|+++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~-------------~~~a~~~~----------------~~~~v~~~d~~~~~ 56 (241)
T PRK08317 6 RYRARTFELLAVQPGDRVLDVGCGPGNDA-------------RELARRVG----------------PEGRVVGIDRSEAM 56 (241)
T ss_pred HHHHHHHHHcCCCCCCEEEEeCCCCCHHH-------------HHHHHhcC----------------CCcEEEEEeCCHHH
Confidence 34566777778888899999999999988 44443110 24689999999999
Q ss_pred HHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHH
Q psy1420 110 LRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALS 189 (241)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~ 189 (241)
++.++++.. .. . .++.+...|+...+.+.++||+|++..+++++.++..+++
T Consensus 57 ~~~a~~~~~-------------------------~~--~-~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~ 108 (241)
T PRK08317 57 LALAKERAA-------------------------GL--G-PNVEFVRGDADGLPFPDGSFDAVRSDRVLQHLEDPARALA 108 (241)
T ss_pred HHHHHHHhh-------------------------CC--C-CceEEEecccccCCCCCCCceEEEEechhhccCCHHHHHH
Confidence 999987733 11 1 3578888998888877789999999999999999999999
Q ss_pred HHHHhccCCcEEEEEecCH------------------------------HHHHHHHHHCCCceEEEEEe
Q psy1420 190 EAYRVLKPGGRFLCLEFSH------------------------------EEFKSMIESAGFQYVTYENL 228 (241)
Q Consensus 190 ~~~~~LkpgG~l~i~~~~~------------------------------~~~~~~l~~~Gf~~~~~~~~ 228 (241)
++.++|||||.+++.+... ..+.++++++||..+..+..
T Consensus 109 ~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~ 177 (241)
T PRK08317 109 EIARVLRPGGRVVVLDTDWDTLVWHSGDRALMRKILNFWSDHFADPWLGRRLPGLFREAGLTDIEVEPY 177 (241)
T ss_pred HHHHHhcCCcEEEEEecCCCceeecCCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHcCCCceeEEEE
Confidence 9999999999998865320 46888999999998777655
No 26
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.62 E-value=6.8e-15 Score=132.58 Aligned_cols=139 Identities=17% Similarity=0.139 Sum_probs=104.9
Q ss_pred HHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHH
Q psy1420 33 DIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRF 112 (241)
Q Consensus 33 ~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~ 112 (241)
..++..+...++.+|||+|||+|..+ ..++. .....++|+|+|+.|+..
T Consensus 111 ~~~l~~l~~~~g~~VLDvGCG~G~~~-------------~~~~~------------------~g~~~v~GiDpS~~ml~q 159 (314)
T TIGR00452 111 DRVLPHLSPLKGRTILDVGCGSGYHM-------------WRMLG------------------HGAKSLVGIDPTVLFLCQ 159 (314)
T ss_pred HHHHHhcCCCCCCEEEEeccCCcHHH-------------HHHHH------------------cCCCEEEEEcCCHHHHHH
Confidence 44566666777889999999999977 43333 022469999999999876
Q ss_pred HHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHHHHH
Q psy1420 113 LEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAY 192 (241)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~~~ 192 (241)
+..... ... ...++.+...++..++.. .+||+|+|..+++|.+++...|++++
T Consensus 160 ~~~~~~-------------------------~~~-~~~~v~~~~~~ie~lp~~-~~FD~V~s~gvL~H~~dp~~~L~el~ 212 (314)
T TIGR00452 160 FEAVRK-------------------------LLD-NDKRAILEPLGIEQLHEL-YAFDTVFSMGVLYHRKSPLEHLKQLK 212 (314)
T ss_pred HHHHHH-------------------------Hhc-cCCCeEEEECCHHHCCCC-CCcCEEEEcchhhccCCHHHHHHHHH
Confidence 433211 001 013567788888887653 47999999999999999999999999
Q ss_pred HhccCCcEEEEEec--------------------------CHHHHHHHHHHCCCceEEEEEec
Q psy1420 193 RVLKPGGRFLCLEF--------------------------SHEEFKSMIESAGFQYVTYENLT 229 (241)
Q Consensus 193 ~~LkpgG~l~i~~~--------------------------~~~~~~~~l~~~Gf~~~~~~~~~ 229 (241)
++|||||.|++.+. +..++.++++++||+.+++.+..
T Consensus 213 r~LkpGG~Lvletl~i~g~~~~~l~p~~ry~k~~nv~flpS~~~L~~~L~~aGF~~V~i~~~~ 275 (314)
T TIGR00452 213 HQLVIKGELVLETLVIDGDLNTVLVPKDRYAKMKNVYFIPSVSALKNWLEKVGFENFRILDVL 275 (314)
T ss_pred HhcCCCCEEEEEEEEecCccccccCchHHHHhccccccCCCHHHHHHHHHHCCCeEEEEEecc
Confidence 99999999997532 12788999999999999877653
No 27
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.60 E-value=1.1e-14 Score=129.00 Aligned_cols=137 Identities=20% Similarity=0.318 Sum_probs=104.2
Q ss_pred HHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHH
Q psy1420 32 KDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLR 111 (241)
Q Consensus 32 ~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~ 111 (241)
.+.+++.++.++|.+|||+|||.|..+ ..++. ..+.+++++.+|+.+.+
T Consensus 51 ~~~~~~~~~l~~G~~vLDiGcGwG~~~-------------~~~a~------------------~~g~~v~gitlS~~Q~~ 99 (273)
T PF02353_consen 51 LDLLCEKLGLKPGDRVLDIGCGWGGLA-------------IYAAE------------------RYGCHVTGITLSEEQAE 99 (273)
T ss_dssp HHHHHTTTT--TT-EEEEES-TTSHHH-------------HHHHH------------------HH--EEEEEES-HHHHH
T ss_pred HHHHHHHhCCCCCCEEEEeCCCccHHH-------------HHHHH------------------HcCcEEEEEECCHHHHH
Confidence 466778888899999999999999988 44444 24678999999999999
Q ss_pred HHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhcc--ccHHHHHH
Q psy1420 112 FLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNV--TRIDKALS 189 (241)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~--~~~~~~l~ 189 (241)
.+++++. ..++. +++++...|..+++. +||.|++...+.|+ .+....++
T Consensus 100 ~a~~~~~-------------------------~~gl~-~~v~v~~~D~~~~~~---~fD~IvSi~~~Ehvg~~~~~~~f~ 150 (273)
T PF02353_consen 100 YARERIR-------------------------EAGLE-DRVEVRLQDYRDLPG---KFDRIVSIEMFEHVGRKNYPAFFR 150 (273)
T ss_dssp HHHHHHH-------------------------CSTSS-STEEEEES-GGG------S-SEEEEESEGGGTCGGGHHHHHH
T ss_pred HHHHHHH-------------------------hcCCC-CceEEEEeeccccCC---CCCEEEEEechhhcChhHHHHHHH
Confidence 9999998 77776 688999999887643 89999999999998 46789999
Q ss_pred HHHHhccCCcEEEEEecCH-----------------------------HHHHHHHHHCCCceEEEEEe
Q psy1420 190 EAYRVLKPGGRFLCLEFSH-----------------------------EEFKSMIESAGFQYVTYENL 228 (241)
Q Consensus 190 ~~~~~LkpgG~l~i~~~~~-----------------------------~~~~~~l~~~Gf~~~~~~~~ 228 (241)
.+.++|||||++++..+.. .++...++++||++...+++
T Consensus 151 ~~~~~LkpgG~~~lq~i~~~~~~~~~~~~~~~~~i~kyiFPgg~lps~~~~~~~~~~~~l~v~~~~~~ 218 (273)
T PF02353_consen 151 KISRLLKPGGRLVLQTITHRDPPYHAERRSSSDFIRKYIFPGGYLPSLSEILRAAEDAGLEVEDVENL 218 (273)
T ss_dssp HHHHHSETTEEEEEEEEEE--HHHHHCTTCCCHHHHHHTSTTS---BHHHHHHHHHHTT-EEEEEEE-
T ss_pred HHHHhcCCCcEEEEEecccccccchhhcCCCceEEEEeeCCCCCCCCHHHHHHHHhcCCEEEEEEEEc
Confidence 9999999999998754221 77777889999999888766
No 28
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.60 E-value=1.4e-14 Score=122.30 Aligned_cols=131 Identities=17% Similarity=0.209 Sum_probs=100.6
Q ss_pred HHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHH
Q psy1420 34 IFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFL 113 (241)
Q Consensus 34 ~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~ 113 (241)
.+++.+...++.+|||+|||+|..+ ..++. ...+++++|+|+.+++.+
T Consensus 21 ~l~~~l~~~~~~~vLDiGcG~G~~a-------------~~La~-------------------~g~~V~gvD~S~~~i~~a 68 (197)
T PRK11207 21 EVLEAVKVVKPGKTLDLGCGNGRNS-------------LYLAA-------------------NGFDVTAWDKNPMSIANL 68 (197)
T ss_pred HHHHhcccCCCCcEEEECCCCCHHH-------------HHHHH-------------------CCCEEEEEeCCHHHHHHH
Confidence 4455555667789999999999988 44443 356899999999999999
Q ss_pred HHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccc--cHHHHHHHH
Q psy1420 114 EANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVT--RIDKALSEA 191 (241)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~--~~~~~l~~~ 191 (241)
++... ..++. ++++...|+...+.+ ++||+|+++.++++++ +...+++++
T Consensus 69 ~~~~~-------------------------~~~~~--~v~~~~~d~~~~~~~-~~fD~I~~~~~~~~~~~~~~~~~l~~i 120 (197)
T PRK11207 69 ERIKA-------------------------AENLD--NLHTAVVDLNNLTFD-GEYDFILSTVVLMFLEAKTIPGLIANM 120 (197)
T ss_pred HHHHH-------------------------HcCCC--cceEEecChhhCCcC-CCcCEEEEecchhhCCHHHHHHHHHHH
Confidence 98877 44443 477888888777653 5799999999998765 567999999
Q ss_pred HHhccCCcEEEEEe-c---------------CHHHHHHHHHHCCCceEEEE
Q psy1420 192 YRVLKPGGRFLCLE-F---------------SHEEFKSMIESAGFQYVTYE 226 (241)
Q Consensus 192 ~~~LkpgG~l~i~~-~---------------~~~~~~~~l~~~Gf~~~~~~ 226 (241)
.++|||||++++.. + +.+++.+.++ ||+++...
T Consensus 121 ~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~~~--~~~~~~~~ 169 (197)
T PRK11207 121 QRCTKPGGYNLIVAAMDTADYPCTVGFPFAFKEGELRRYYE--GWEMVKYN 169 (197)
T ss_pred HHHcCCCcEEEEEEEecCCCCCCCCCCCCccCHHHHHHHhC--CCeEEEee
Confidence 99999999965532 1 1267777776 89887764
No 29
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.60 E-value=1e-14 Score=127.12 Aligned_cols=108 Identities=18% Similarity=0.239 Sum_probs=85.6
Q ss_pred CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCC
Q psy1420 42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP 121 (241)
Q Consensus 42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~ 121 (241)
.++.+|||+|||+|..+ ..++. .+. .+..+++++|+|+.|++.+++++.
T Consensus 55 ~~~~~vLDlGcGtG~~~-------------~~l~~----~~~-----------~~~~~v~gvD~S~~ml~~A~~~~~--- 103 (247)
T PRK15451 55 QPGTQVYDLGCSLGAAT-------------LSVRR----NIH-----------HDNCKIIAIDNSPAMIERCRRHID--- 103 (247)
T ss_pred CCCCEEEEEcccCCHHH-------------HHHHH----hcC-----------CCCCeEEEEeCCHHHHHHHHHHHH---
Confidence 46779999999999987 32222 100 135689999999999999999987
Q ss_pred CccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhcccc--HHHHHHHHHHhccCCc
Q psy1420 122 IESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTR--IDKALSEAYRVLKPGG 199 (241)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~--~~~~l~~~~~~LkpgG 199 (241)
..+.. .+++++++|+...+.+ .+|+|+++++++++++ ...++++++++|||||
T Consensus 104 ----------------------~~~~~-~~v~~~~~d~~~~~~~--~~D~vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG 158 (247)
T PRK15451 104 ----------------------AYKAP-TPVDVIEGDIRDIAIE--NASMVVLNFTLQFLEPSERQALLDKIYQGLNPGG 158 (247)
T ss_pred ----------------------hcCCC-CCeEEEeCChhhCCCC--CCCEEehhhHHHhCCHHHHHHHHHHHHHhcCCCC
Confidence 43433 4688999999887754 4899999999998864 4689999999999999
Q ss_pred EEEEEe
Q psy1420 200 RFLCLE 205 (241)
Q Consensus 200 ~l~i~~ 205 (241)
.+++.+
T Consensus 159 ~l~l~e 164 (247)
T PRK15451 159 ALVLSE 164 (247)
T ss_pred EEEEEE
Confidence 999976
No 30
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.60 E-value=8.5e-15 Score=118.04 Aligned_cols=109 Identities=21% Similarity=0.401 Sum_probs=91.7
Q ss_pred CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCC
Q psy1420 42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP 121 (241)
Q Consensus 42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~ 121 (241)
+++.+|||+|||+|..+ ..+++.++ +..+++++|+++.+++.+++.+.
T Consensus 2 ~~~~~iLDlGcG~G~~~-------------~~l~~~~~----------------~~~~i~gvD~s~~~i~~a~~~~~--- 49 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLL-------------IQLAKELN----------------PGAKIIGVDISEEMIEYAKKRAK--- 49 (152)
T ss_dssp TTTSEEEEET-TTSHHH-------------HHHHHHST----------------TTSEEEEEESSHHHHHHHHHHHH---
T ss_pred CCCCEEEEecCcCcHHH-------------HHHHHhcC----------------CCCEEEEEECcHHHHHHhhcccc---
Confidence 45779999999999988 44442100 35679999999999999999887
Q ss_pred CccccccccceecceeeeeeccccCCCCCCeeEEecccCCCC--CCCCceeEEeeeehhhccccHHHHHHHHHHhccCCc
Q psy1420 122 IESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELP--IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGG 199 (241)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG 199 (241)
+.+++ ++++.+.|+.+++ ++ ++||+|++..++++++++..+++++.+.|+|||
T Consensus 50 ----------------------~~~~~--ni~~~~~d~~~l~~~~~-~~~D~I~~~~~l~~~~~~~~~l~~~~~~lk~~G 104 (152)
T PF13847_consen 50 ----------------------ELGLD--NIEFIQGDIEDLPQELE-EKFDIIISNGVLHHFPDPEKVLKNIIRLLKPGG 104 (152)
T ss_dssp ----------------------HTTST--TEEEEESBTTCGCGCSS-TTEEEEEEESTGGGTSHHHHHHHHHHHHEEEEE
T ss_pred ----------------------ccccc--ccceEEeehhccccccC-CCeeEEEEcCchhhccCHHHHHHHHHHHcCCCc
Confidence 55554 7999999999976 44 789999999999999999999999999999999
Q ss_pred EEEEEecC
Q psy1420 200 RFLCLEFS 207 (241)
Q Consensus 200 ~l~i~~~~ 207 (241)
.+++.+..
T Consensus 105 ~~i~~~~~ 112 (152)
T PF13847_consen 105 ILIISDPN 112 (152)
T ss_dssp EEEEEEEE
T ss_pred EEEEEECC
Confidence 99998877
No 31
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.59 E-value=2.3e-14 Score=122.13 Aligned_cols=123 Identities=26% Similarity=0.417 Sum_probs=98.0
Q ss_pred CCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCC
Q psy1420 43 HDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPI 122 (241)
Q Consensus 43 ~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~ 122 (241)
++.+|||+|||+|.++ ..+.. .. ....++++|+++.+++.+.....
T Consensus 34 ~~~~vLDlG~G~G~~~-------------~~l~~----~~-------------~~~~~~~~D~~~~~~~~~~~~~~---- 79 (240)
T TIGR02072 34 IPASVLDIGCGTGYLT-------------RALLK----RF-------------PQAEFIALDISAGMLAQAKTKLS---- 79 (240)
T ss_pred CCCeEEEECCCccHHH-------------HHHHH----hC-------------CCCcEEEEeChHHHHHHHHHhcC----
Confidence 4468999999999988 33333 10 24568999999999998876654
Q ss_pred ccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHHHHHHhccCCcEEE
Q psy1420 123 ESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFL 202 (241)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~ 202 (241)
+++.++.+|+...+.++++||+|++..++++..++...+.++.++|+|||.++
T Consensus 80 ---------------------------~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~~~~~~~~~l~~~~~~L~~~G~l~ 132 (240)
T TIGR02072 80 ---------------------------ENVQFICGDAEKLPLEDSSFDLIVSNLALQWCDDLSQALSELARVLKPGGLLA 132 (240)
T ss_pred ---------------------------CCCeEEecchhhCCCCCCceeEEEEhhhhhhccCHHHHHHHHHHHcCCCcEEE
Confidence 25778899999888777899999999999999999999999999999999999
Q ss_pred EEecCH--------------------HHHHHHHHHCCCceEEEEE
Q psy1420 203 CLEFSH--------------------EEFKSMIESAGFQYVTYEN 227 (241)
Q Consensus 203 i~~~~~--------------------~~~~~~l~~~Gf~~~~~~~ 227 (241)
+.++.. ..+.++++++ |..+.+..
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-f~~~~~~~ 176 (240)
T TIGR02072 133 FSTFGPGTLHELRQSFGQHGLRYLSLDELKALLKNS-FELLTLEE 176 (240)
T ss_pred EEeCCccCHHHHHHHHHHhccCCCCHHHHHHHHHHh-cCCcEEEE
Confidence 876433 4567777777 77655543
No 32
>KOG1270|consensus
Probab=99.59 E-value=7.9e-15 Score=127.09 Aligned_cols=141 Identities=21% Similarity=0.289 Sum_probs=108.5
Q ss_pred HHHHHHHhhcCC-CC------CCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCcee
Q psy1420 30 LWKDIFIDRLGP-TH------DTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQ 102 (241)
Q Consensus 30 ~~~~~~~~~l~~-~~------~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (241)
+.++.++..... .| |++|||+|||+|-++ ..+++ .+..+.|
T Consensus 69 fi~d~~~~~v~~~~p~~k~~~g~~ilDvGCGgGLLS-------------epLAr-------------------lga~V~G 116 (282)
T KOG1270|consen 69 FIRDDLRNRVNNHAPGSKPLLGMKILDVGCGGGLLS-------------EPLAR-------------------LGAQVTG 116 (282)
T ss_pred HHHHHHHhcccccCCCccccCCceEEEeccCccccc-------------hhhHh-------------------hCCeeEe
Confidence 345666666522 33 478999999999999 66666 5789999
Q ss_pred ecCChHhHHHHHHHHhcCCCccccccccceecceeeeeeccccC-CCCCCeeEEecccCCCCCCCCceeEEeeeehhhcc
Q psy1420 103 IDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKID-IPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNV 181 (241)
Q Consensus 103 ~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~ 181 (241)
+|+++.|++.|+......|. ..+ +. -++++.+.+++.. .+.||+|+|+.+++|+
T Consensus 117 ID~s~~~V~vA~~h~~~dP~---------------------~~~~~~-y~l~~~~~~~E~~---~~~fDaVvcsevleHV 171 (282)
T KOG1270|consen 117 IDASDDMVEVANEHKKMDPV---------------------LEGAIA-YRLEYEDTDVEGL---TGKFDAVVCSEVLEHV 171 (282)
T ss_pred ecccHHHHHHHHHhhhcCch---------------------hccccc-eeeehhhcchhhc---ccccceeeeHHHHHHH
Confidence 99999999999988542111 111 00 1356677777766 3569999999999999
Q ss_pred ccHHHHHHHHHHhccCCcEEEEEecCH--------------------------------HHHHHHHHHCCCceEEEEE
Q psy1420 182 TRIDKALSEAYRVLKPGGRFLCLEFSH--------------------------------EEFKSMIESAGFQYVTYEN 227 (241)
Q Consensus 182 ~~~~~~l~~~~~~LkpgG~l~i~~~~~--------------------------------~~~~~~l~~~Gf~~~~~~~ 227 (241)
.++..+++.+.+.|||||++++.+..+ .++..+++.+++++..+..
T Consensus 172 ~dp~~~l~~l~~~lkP~G~lfittinrt~lS~~~~i~~~E~vl~ivp~Gth~~ekfi~p~e~~~~l~~~~~~v~~v~G 249 (282)
T KOG1270|consen 172 KDPQEFLNCLSALLKPNGRLFITTINRTILSFAGTIFLAEIVLRIVPKGTHTWEKFINPEELTSILNANGAQVNDVVG 249 (282)
T ss_pred hCHHHHHHHHHHHhCCCCceEeeehhhhHHHhhccccHHHHHHHhcCCCCcCHHHcCCHHHHHHHHHhcCcchhhhhc
Confidence 999999999999999999999988555 8888999999988766553
No 33
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.58 E-value=2.6e-14 Score=121.97 Aligned_cols=129 Identities=16% Similarity=0.203 Sum_probs=105.9
Q ss_pred eEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCCccc
Q psy1420 46 KLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIESD 125 (241)
Q Consensus 46 ~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~ 125 (241)
+|||+|||+|..+ ..++. .. ....++++|+|+.+++.+++++.
T Consensus 2 ~vLDiGcG~G~~~-------------~~la~----~~-------------~~~~v~gid~s~~~~~~a~~~~~------- 44 (224)
T smart00828 2 RVLDFGCGYGSDL-------------IDLAE----RH-------------PHLQLHGYTISPEQAEVGRERIR------- 44 (224)
T ss_pred eEEEECCCCCHHH-------------HHHHH----HC-------------CCCEEEEEECCHHHHHHHHHHHH-------
Confidence 6999999999987 43333 10 24579999999999999999887
Q ss_pred cccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHHHHHHhccCCcEEEEEe
Q psy1420 126 SYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 205 (241)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 205 (241)
..++. +++++...|....+.+ ++||+|++..++++++++...+++++++|||||++++.+
T Consensus 45 ------------------~~gl~-~~i~~~~~d~~~~~~~-~~fD~I~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 104 (224)
T smart00828 45 ------------------ALGLQ-GRIRIFYRDSAKDPFP-DTYDLVFGFEVIHHIKDKMDLFSNISRHLKDGGHLVLAD 104 (224)
T ss_pred ------------------hcCCC-cceEEEecccccCCCC-CCCCEeehHHHHHhCCCHHHHHHHHHHHcCCCCEEEEEE
Confidence 55554 5788999998766554 589999999999999999999999999999999999876
Q ss_pred cC------------------HHHHHHHHHHCCCceEEEEEecCc
Q psy1420 206 FS------------------HEEFKSMIESAGFQYVTYENLTFG 231 (241)
Q Consensus 206 ~~------------------~~~~~~~l~~~Gf~~~~~~~~~~~ 231 (241)
+. ..++.++++++||++++..++.-.
T Consensus 105 ~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~~~~~~~~~~~ 148 (224)
T smart00828 105 FIANLLSAIEHEETTSYLVTREEWAELLARNNLRVVEGVDASLE 148 (224)
T ss_pred cccccCccccccccccccCCHHHHHHHHHHCCCeEEEeEECcHh
Confidence 42 277899999999999998877544
No 34
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.57 E-value=7.7e-14 Score=117.09 Aligned_cols=126 Identities=21% Similarity=0.305 Sum_probs=102.1
Q ss_pred CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCC
Q psy1420 42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP 121 (241)
Q Consensus 42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~ 121 (241)
+++.+|||+|||+|..+ ..++. . .+..+++++|+++.+++.+++++.
T Consensus 44 ~~g~~VLDiGcGtG~~a-------------l~la~----~-------------~~~~~V~giD~s~~~l~~A~~~~~--- 90 (187)
T PRK00107 44 PGGERVLDVGSGAGFPG-------------IPLAI----A-------------RPELKVTLVDSLGKKIAFLREVAA--- 90 (187)
T ss_pred CCCCeEEEEcCCCCHHH-------------HHHHH----H-------------CCCCeEEEEeCcHHHHHHHHHHHH---
Confidence 34789999999999987 32222 0 135789999999999999999988
Q ss_pred CccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHHHHHHhccCCcEE
Q psy1420 122 IESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRF 201 (241)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l 201 (241)
+.+++ +++++++|+.+.+. .++||+|++.. +.++..+++.++++|||||++
T Consensus 91 ----------------------~~~l~--~i~~~~~d~~~~~~-~~~fDlV~~~~----~~~~~~~l~~~~~~LkpGG~l 141 (187)
T PRK00107 91 ----------------------ELGLK--NVTVVHGRAEEFGQ-EEKFDVVTSRA----VASLSDLVELCLPLLKPGGRF 141 (187)
T ss_pred ----------------------HcCCC--CEEEEeccHhhCCC-CCCccEEEEcc----ccCHHHHHHHHHHhcCCCeEE
Confidence 55654 48999999988766 67899999853 467889999999999999999
Q ss_pred EEEecCH--HHHHHHHHHCCCceEEEEEec
Q psy1420 202 LCLEFSH--EEFKSMIESAGFQYVTYENLT 229 (241)
Q Consensus 202 ~i~~~~~--~~~~~~l~~~Gf~~~~~~~~~ 229 (241)
++..... .++.++.+..|..+.+...++
T Consensus 142 v~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 171 (187)
T PRK00107 142 LALKGRDPEEEIAELPKALGGKVEEVIELT 171 (187)
T ss_pred EEEeCCChHHHHHHHHHhcCceEeeeEEEe
Confidence 9887655 788899999999987776664
No 35
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.55 E-value=2.1e-14 Score=109.04 Aligned_cols=106 Identities=20% Similarity=0.294 Sum_probs=82.4
Q ss_pred CCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCC
Q psy1420 43 HDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPI 122 (241)
Q Consensus 43 ~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~ 122 (241)
|+.+|||+|||+|..+ ..++. . ....+++++|+++.+++.+++++.
T Consensus 1 p~~~vLDlGcG~G~~~-------------~~l~~----~-------------~~~~~v~gvD~s~~~~~~a~~~~~---- 46 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLS-------------IALAR----L-------------FPGARVVGVDISPEMLEIARERAA---- 46 (112)
T ss_dssp TTCEEEEETTTTSHHH-------------HHHHH----H-------------HTTSEEEEEESSHHHHHHHHHHHH----
T ss_pred CCCEEEEEcCcCCHHH-------------HHHHh----c-------------CCCCEEEEEeCCHHHHHHHHHHHH----
Confidence 5779999999999988 33322 0 146789999999999999999985
Q ss_pred ccccccccceecceeeeeeccccCCCCCCeeEEeccc-CCCCCCCCceeEEeeee-hhhcc---ccHHHHHHHHHHhccC
Q psy1420 123 ESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANA-EELPIESDSYSAYTIAF-GIRNV---TRIDKALSEAYRVLKP 197 (241)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~-~~~~~~~~~~D~V~~~~-~l~~~---~~~~~~l~~~~~~Lkp 197 (241)
+.+.. +++++++.|+ ..... .++||+|++.. .+++. ++..++++.+.+.|+|
T Consensus 47 ---------------------~~~~~-~~i~~~~~d~~~~~~~-~~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~p 103 (112)
T PF12847_consen 47 ---------------------EEGLS-DRITFVQGDAEFDPDF-LEPFDLVICSGFTLHFLLPLDERRRVLERIRRLLKP 103 (112)
T ss_dssp ---------------------HTTTT-TTEEEEESCCHGGTTT-SSCEEEEEECSGSGGGCCHHHHHHHHHHHHHHHEEE
T ss_pred ---------------------hcCCC-CCeEEEECccccCccc-CCCCCEEEECCCccccccchhHHHHHHHHHHHhcCC
Confidence 33333 6899999999 33332 45799999998 44433 4568999999999999
Q ss_pred CcEEEEEe
Q psy1420 198 GGRFLCLE 205 (241)
Q Consensus 198 gG~l~i~~ 205 (241)
||++++.+
T Consensus 104 gG~lvi~~ 111 (112)
T PF12847_consen 104 GGRLVINT 111 (112)
T ss_dssp EEEEEEEE
T ss_pred CcEEEEEE
Confidence 99999864
No 36
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.55 E-value=1.3e-14 Score=125.49 Aligned_cols=108 Identities=16% Similarity=0.164 Sum_probs=85.1
Q ss_pred CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCC
Q psy1420 42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP 121 (241)
Q Consensus 42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~ 121 (241)
.++.+|||+|||+|..+ ..++. .+. .+..+++++|+|+.|++.+++++.
T Consensus 52 ~~~~~iLDlGcG~G~~~-------------~~l~~----~~~-----------~p~~~v~gvD~s~~ml~~a~~~~~--- 100 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAAT-------------LSARR----NIN-----------QPNVKIIGIDNSQPMVERCRQHIA--- 100 (239)
T ss_pred CCCCEEEEecCCCCHHH-------------HHHHH----hcC-----------CCCCeEEEEeCCHHHHHHHHHHHH---
Confidence 46679999999999987 33333 110 135789999999999999998876
Q ss_pred CccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccc--cHHHHHHHHHHhccCCc
Q psy1420 122 IESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVT--RIDKALSEAYRVLKPGG 199 (241)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~--~~~~~l~~~~~~LkpgG 199 (241)
..+.. .+++++++|+...+.+ .+|+|++++++++++ ++..++++++++|||||
T Consensus 101 ----------------------~~~~~-~~v~~~~~d~~~~~~~--~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpgG 155 (239)
T TIGR00740 101 ----------------------AYHSE-IPVEILCNDIRHVEIK--NASMVILNFTLQFLPPEDRIALLTKIYEGLNPNG 155 (239)
T ss_pred ----------------------hcCCC-CCeEEEECChhhCCCC--CCCEEeeecchhhCCHHHHHHHHHHHHHhcCCCe
Confidence 32222 3688999999988754 489999999999875 45789999999999999
Q ss_pred EEEEEe
Q psy1420 200 RFLCLE 205 (241)
Q Consensus 200 ~l~i~~ 205 (241)
.+++.+
T Consensus 156 ~l~i~d 161 (239)
T TIGR00740 156 VLVLSE 161 (239)
T ss_pred EEEEee
Confidence 999986
No 37
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.55 E-value=7.5e-14 Score=117.57 Aligned_cols=129 Identities=12% Similarity=0.177 Sum_probs=95.1
Q ss_pred HHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHH
Q psy1420 35 FIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLE 114 (241)
Q Consensus 35 ~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~ 114 (241)
+.+.+...++.+|||+|||+|.++ ..++. ....++++|+|+.+++.++
T Consensus 22 l~~~~~~~~~~~vLDiGcG~G~~a-------------~~la~-------------------~g~~V~~iD~s~~~l~~a~ 69 (195)
T TIGR00477 22 VREAVKTVAPCKTLDLGCGQGRNS-------------LYLSL-------------------AGYDVRAWDHNPASIASVL 69 (195)
T ss_pred HHHHhccCCCCcEEEeCCCCCHHH-------------HHHHH-------------------CCCeEEEEECCHHHHHHHH
Confidence 334445555679999999999988 33333 3568999999999999998
Q ss_pred HHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccc--cHHHHHHHHH
Q psy1420 115 ANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVT--RIDKALSEAY 192 (241)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~--~~~~~l~~~~ 192 (241)
+++. ..++. +.....|+...+.+ ++||+|+++.++++++ +....+++++
T Consensus 70 ~~~~-------------------------~~~~~---v~~~~~d~~~~~~~-~~fD~I~~~~~~~~~~~~~~~~~l~~~~ 120 (195)
T TIGR00477 70 DMKA-------------------------RENLP---LRTDAYDINAAALN-EDYDFIFSTVVFMFLQAGRVPEIIANMQ 120 (195)
T ss_pred HHHH-------------------------HhCCC---ceeEeccchhcccc-CCCCEEEEecccccCCHHHHHHHHHHHH
Confidence 8776 43433 55666776655543 5799999999998774 5678999999
Q ss_pred HhccCCcEEEEEec----------------CHHHHHHHHHHCCCceEEEE
Q psy1420 193 RVLKPGGRFLCLEF----------------SHEEFKSMIESAGFQYVTYE 226 (241)
Q Consensus 193 ~~LkpgG~l~i~~~----------------~~~~~~~~l~~~Gf~~~~~~ 226 (241)
++|||||++++.++ +.+++.+.+. +|+++...
T Consensus 121 ~~LkpgG~lli~~~~~~~~~~~~~~~~~~~~~~el~~~f~--~~~~~~~~ 168 (195)
T TIGR00477 121 AHTRPGGYNLIVAAMDTADYPCHMPFSFTFKEDELRQYYA--DWELLKYN 168 (195)
T ss_pred HHhCCCcEEEEEEecccCCCCCCCCcCccCCHHHHHHHhC--CCeEEEee
Confidence 99999999766532 1177777775 57777666
No 38
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.54 E-value=1.2e-13 Score=120.42 Aligned_cols=111 Identities=12% Similarity=0.081 Sum_probs=89.6
Q ss_pred HHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhH
Q psy1420 31 WKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRL 110 (241)
Q Consensus 31 ~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~ 110 (241)
..+.++..+...++.+|||+|||+|.++ ..+.. . .+..+++++|+|+.++
T Consensus 19 ~~~~ll~~~~~~~~~~vLDiGcG~G~~~-------------~~la~----~-------------~~~~~v~gvD~s~~~i 68 (258)
T PRK01683 19 PARDLLARVPLENPRYVVDLGCGPGNST-------------ELLVE----R-------------WPAARITGIDSSPAML 68 (258)
T ss_pred HHHHHHhhCCCcCCCEEEEEcccCCHHH-------------HHHHH----H-------------CCCCEEEEEECCHHHH
Confidence 3456667777778889999999999988 33332 1 0246899999999999
Q ss_pred HHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHHH
Q psy1420 111 RFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSE 190 (241)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~ 190 (241)
+.++++.. ++.+..+|+.... +..+||+|+++.++++++++..++++
T Consensus 69 ~~a~~~~~--------------------------------~~~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~d~~~~l~~ 115 (258)
T PRK01683 69 AEARSRLP--------------------------------DCQFVEADIASWQ-PPQALDLIFANASLQWLPDHLELFPR 115 (258)
T ss_pred HHHHHhCC--------------------------------CCeEEECchhccC-CCCCccEEEEccChhhCCCHHHHHHH
Confidence 99886643 4677888887654 34589999999999999999999999
Q ss_pred HHHhccCCcEEEEE
Q psy1420 191 AYRVLKPGGRFLCL 204 (241)
Q Consensus 191 ~~~~LkpgG~l~i~ 204 (241)
++++|||||.+++.
T Consensus 116 ~~~~LkpgG~~~~~ 129 (258)
T PRK01683 116 LVSLLAPGGVLAVQ 129 (258)
T ss_pred HHHhcCCCcEEEEE
Confidence 99999999999885
No 39
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.53 E-value=4.9e-13 Score=114.83 Aligned_cols=166 Identities=16% Similarity=0.237 Sum_probs=117.0
Q ss_pred hHHHHHhhhhhccc-cchhhhhh-hhHHHHHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhh
Q psy1420 4 PMYEVFENVAKSYD-TMNDAMSF-GIHRLWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQL 81 (241)
Q Consensus 4 ~~~~~f~~~~~~yd-~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (241)
.....|+.++..|. .....-.. .......+.+...+...++.+|||+|||+|..+ ..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLdiG~G~G~~~-------------~~l~~----- 68 (233)
T PRK05134 7 AEIAKFSALAARWWDPNGEFKPLHRINPLRLNYIREHAGGLFGKRVLDVGCGGGILS-------------ESMAR----- 68 (233)
T ss_pred HHHHHHHHHHHHHhccCCCcHHHHHhhHHHHHHHHHhccCCCCCeEEEeCCCCCHHH-------------HHHHH-----
Confidence 45677888888553 32111111 001111234444445667889999999999887 33333
Q ss_pred hhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCC
Q psy1420 82 IAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEE 161 (241)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 161 (241)
....++++|+++.+++.+.++.. ..+. .+++...++..
T Consensus 69 --------------~~~~v~~iD~s~~~~~~a~~~~~-------------------------~~~~---~~~~~~~~~~~ 106 (233)
T PRK05134 69 --------------LGADVTGIDASEENIEVARLHAL-------------------------ESGL---KIDYRQTTAEE 106 (233)
T ss_pred --------------cCCeEEEEcCCHHHHHHHHHHHH-------------------------HcCC---ceEEEecCHHH
Confidence 24579999999999999888765 2222 35666777665
Q ss_pred CC-CCCCceeEEeeeehhhccccHHHHHHHHHHhccCCcEEEEEecC--------------------------------H
Q psy1420 162 LP-IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFS--------------------------------H 208 (241)
Q Consensus 162 ~~-~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~--------------------------------~ 208 (241)
.+ ...++||+|+++.++++.+++...++.+.+.|+|||.+++.... .
T Consensus 107 ~~~~~~~~fD~Ii~~~~l~~~~~~~~~l~~~~~~L~~gG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (233)
T PRK05134 107 LAAEHPGQFDVVTCMEMLEHVPDPASFVRACAKLVKPGGLVFFSTLNRNLKSYLLAIVGAEYVLRMLPKGTHDYKKFIKP 186 (233)
T ss_pred hhhhcCCCccEEEEhhHhhccCCHHHHHHHHHHHcCCCcEEEEEecCCChHHHHHHHhhHHHHhhhcCcccCchhhcCCH
Confidence 54 23468999999999999999999999999999999999886431 1
Q ss_pred HHHHHHHHHCCCceEEEEEec
Q psy1420 209 EEFKSMIESAGFQYVTYENLT 229 (241)
Q Consensus 209 ~~~~~~l~~~Gf~~~~~~~~~ 229 (241)
+++.++++++||.++......
T Consensus 187 ~~~~~~l~~~Gf~~v~~~~~~ 207 (233)
T PRK05134 187 SELAAWLRQAGLEVQDITGLH 207 (233)
T ss_pred HHHHHHHHHCCCeEeeeeeEE
Confidence 679999999999998776443
No 40
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.52 E-value=1e-13 Score=122.42 Aligned_cols=137 Identities=20% Similarity=0.328 Sum_probs=114.5
Q ss_pred HHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHH
Q psy1420 32 KDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLR 111 (241)
Q Consensus 32 ~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~ 111 (241)
.+.+++.++.+||++|||+|||.|.++ +.++. ..+.+++|+++|+++.+
T Consensus 61 ~~~~~~kl~L~~G~~lLDiGCGWG~l~-------------~~aA~------------------~y~v~V~GvTlS~~Q~~ 109 (283)
T COG2230 61 LDLILEKLGLKPGMTLLDIGCGWGGLA-------------IYAAE------------------EYGVTVVGVTLSEEQLA 109 (283)
T ss_pred HHHHHHhcCCCCCCEEEEeCCChhHHH-------------HHHHH------------------HcCCEEEEeeCCHHHHH
Confidence 567788889999999999999999988 44444 24689999999999999
Q ss_pred HHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhcccc--HHHHHH
Q psy1420 112 FLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTR--IDKALS 189 (241)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~--~~~~l~ 189 (241)
.+++++. +.++. ++++++-.|...+. ++||.|++...++|+.. ....++
T Consensus 110 ~~~~r~~-------------------------~~gl~-~~v~v~l~d~rd~~---e~fDrIvSvgmfEhvg~~~~~~ff~ 160 (283)
T COG2230 110 YAEKRIA-------------------------ARGLE-DNVEVRLQDYRDFE---EPFDRIVSVGMFEHVGKENYDDFFK 160 (283)
T ss_pred HHHHHHH-------------------------HcCCC-cccEEEeccccccc---cccceeeehhhHHHhCcccHHHHHH
Confidence 9999888 67776 68889888888774 44999999999999865 899999
Q ss_pred HHHHhccCCcEEEEEecCH-------------------------HHHHHHHHHCCCceEEEEEe
Q psy1420 190 EAYRVLKPGGRFLCLEFSH-------------------------EEFKSMIESAGFQYVTYENL 228 (241)
Q Consensus 190 ~~~~~LkpgG~l~i~~~~~-------------------------~~~~~~l~~~Gf~~~~~~~~ 228 (241)
.++++|+|||++++-+... .++.+..+++||.+.+.+.+
T Consensus 161 ~~~~~L~~~G~~llh~I~~~~~~~~~~~~~i~~yiFPgG~lPs~~~i~~~~~~~~~~v~~~~~~ 224 (283)
T COG2230 161 KVYALLKPGGRMLLHSITGPDQEFRRFPDFIDKYIFPGGELPSISEILELASEAGFVVLDVESL 224 (283)
T ss_pred HHHhhcCCCceEEEEEecCCCcccccchHHHHHhCCCCCcCCCHHHHHHHHHhcCcEEehHhhh
Confidence 9999999999998754322 67777788999988776654
No 41
>PRK06202 hypothetical protein; Provisional
Probab=99.51 E-value=3.3e-13 Score=116.17 Aligned_cols=141 Identities=18% Similarity=0.271 Sum_probs=97.6
Q ss_pred HHHHHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCCh
Q psy1420 28 HRLWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPN 107 (241)
Q Consensus 28 ~~~~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~ 107 (241)
...+...+...+...++.+|||+|||+|..+ ..++. ..... ....+++++|+++
T Consensus 45 ~~~~~~~~~~~l~~~~~~~iLDlGcG~G~~~-------------~~L~~----~~~~~---------g~~~~v~gvD~s~ 98 (232)
T PRK06202 45 RGLYRRLLRPALSADRPLTLLDIGCGGGDLA-------------IDLAR----WARRD---------GLRLEVTAIDPDP 98 (232)
T ss_pred HHHHHHHHHHhcCCCCCcEEEEeccCCCHHH-------------HHHHH----HHHhC---------CCCcEEEEEcCCH
Confidence 3444444444444456779999999999987 33322 11111 0245899999999
Q ss_pred HhHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccH--H
Q psy1420 108 PRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRI--D 185 (241)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~--~ 185 (241)
.|++.++++.. . .++.+...+...++.++++||+|+++.++||+++. .
T Consensus 99 ~~l~~a~~~~~-------------------------~-----~~~~~~~~~~~~l~~~~~~fD~V~~~~~lhh~~d~~~~ 148 (232)
T PRK06202 99 RAVAFARANPR-------------------------R-----PGVTFRQAVSDELVAEGERFDVVTSNHFLHHLDDAEVV 148 (232)
T ss_pred HHHHHHHhccc-------------------------c-----CCCeEEEEecccccccCCCccEEEECCeeecCChHHHH
Confidence 99999987654 1 13455566666665556799999999999999875 4
Q ss_pred HHHHHHHHhccCCcEEEEEecCH-----------------------------------HHHHHHHHHCCCceEEEEE
Q psy1420 186 KALSEAYRVLKPGGRFLCLEFSH-----------------------------------EEFKSMIESAGFQYVTYEN 227 (241)
Q Consensus 186 ~~l~~~~~~LkpgG~l~i~~~~~-----------------------------------~~~~~~l~~~Gf~~~~~~~ 227 (241)
.+++++.++++ |.+++.++.. +++.+++++ ||++...-.
T Consensus 149 ~~l~~~~r~~~--~~~~i~dl~~~~~~~~~~~~~~~~~~~~~~~~~d~~~s~~~~~~~~el~~ll~~-Gf~~~~~~~ 222 (232)
T PRK06202 149 RLLADSAALAR--RLVLHNDLIRSRLAYALFWAGTRLLSRSSFVHTDGLLSVRRSYTPAELAALAPQ-GWRVERQWP 222 (232)
T ss_pred HHHHHHHHhcC--eeEEEeccccCHHHHHHHHHHHHHhccCceeeccchHHHHhhcCHHHHHHHhhC-CCeEEeccc
Confidence 79999999998 4555544332 788888888 998665543
No 42
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.50 E-value=4.6e-13 Score=119.98 Aligned_cols=135 Identities=16% Similarity=0.284 Sum_probs=105.6
Q ss_pred HHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHH
Q psy1420 32 KDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLR 111 (241)
Q Consensus 32 ~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~ 111 (241)
.+.+.+.....++.+|||+|||+|..+ ..++. .. +..+++++|. +.+++
T Consensus 138 ~~~l~~~~~~~~~~~vlDiG~G~G~~~-------------~~~~~-------~~----------p~~~~~~~D~-~~~~~ 186 (306)
T TIGR02716 138 IQLLLEEAKLDGVKKMIDVGGGIGDIS-------------AAMLK-------HF----------PELDSTILNL-PGAID 186 (306)
T ss_pred HHHHHHHcCCCCCCEEEEeCCchhHHH-------------HHHHH-------HC----------CCCEEEEEec-HHHHH
Confidence 455566666677889999999999988 44443 11 3467899997 78899
Q ss_pred HHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccH--HHHHH
Q psy1420 112 FLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRI--DKALS 189 (241)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~--~~~l~ 189 (241)
.+++++. +.++. ++++++.+|+.+.+++. +|+|+++.++|++++. .++++
T Consensus 187 ~a~~~~~-------------------------~~gl~-~rv~~~~~d~~~~~~~~--~D~v~~~~~lh~~~~~~~~~il~ 238 (306)
T TIGR02716 187 LVNENAA-------------------------EKGVA-DRMRGIAVDIYKESYPE--ADAVLFCRILYSANEQLSTIMCK 238 (306)
T ss_pred HHHHHHH-------------------------hCCcc-ceEEEEecCccCCCCCC--CCEEEeEhhhhcCChHHHHHHHH
Confidence 9988887 55655 57999999988765543 6999999999987654 58999
Q ss_pred HHHHhccCCcEEEEEecCH------------------------------HHHHHHHHHCCCceEEE
Q psy1420 190 EAYRVLKPGGRFLCLEFSH------------------------------EEFKSMIESAGFQYVTY 225 (241)
Q Consensus 190 ~~~~~LkpgG~l~i~~~~~------------------------------~~~~~~l~~~Gf~~~~~ 225 (241)
++++.|+|||++++.++.. +++.++++++||+.+++
T Consensus 239 ~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ll~~aGf~~v~~ 304 (306)
T TIGR02716 239 KAFDAMRSGGRLLILDMVIDDPENPNFDYLSHYILGAGMPFSVLGFKEQARYKEILESLGYKDVTM 304 (306)
T ss_pred HHHHhcCCCCEEEEEEeccCCCCCchhhHHHHHHHHcccccccccCCCHHHHHHHHHHcCCCeeEe
Confidence 9999999999999986411 57899999999987764
No 43
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.46 E-value=1.8e-12 Score=107.35 Aligned_cols=128 Identities=18% Similarity=0.206 Sum_probs=97.1
Q ss_pred CCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhc
Q psy1420 40 GPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEE 119 (241)
Q Consensus 40 ~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~ 119 (241)
...++.+|||+|||+|..+ ..+.. ...+++++|+++.+++.+++++.
T Consensus 16 ~~~~~~~vLdlG~G~G~~~-------------~~l~~-------------------~~~~v~~vD~s~~~~~~a~~~~~- 62 (179)
T TIGR00537 16 RELKPDDVLEIGAGTGLVA-------------IRLKG-------------------KGKCILTTDINPFAVKELRENAK- 62 (179)
T ss_pred HhcCCCeEEEeCCChhHHH-------------HHHHh-------------------cCCEEEEEECCHHHHHHHHHHHH-
Confidence 3345668999999999988 44433 22379999999999999999876
Q ss_pred CCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhcccc----------------
Q psy1420 120 LPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTR---------------- 183 (241)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~---------------- 183 (241)
..+. ++++..+|....+ .++||+|+++..+++.++
T Consensus 63 ------------------------~~~~---~~~~~~~d~~~~~--~~~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~ 113 (179)
T TIGR00537 63 ------------------------LNNV---GLDVVMTDLFKGV--RGKFDVILFNPPYLPLEDDLRRGDWLDVAIDGGK 113 (179)
T ss_pred ------------------------HcCC---ceEEEEccccccc--CCcccEEEECCCCCCCcchhcccchhhhhhhcCC
Confidence 3332 3677888876643 358999999866654332
Q ss_pred -----HHHHHHHHHHhccCCcEEEEEecCH---HHHHHHHHHCCCceEEEEEec
Q psy1420 184 -----IDKALSEAYRVLKPGGRFLCLEFSH---EEFKSMIESAGFQYVTYENLT 229 (241)
Q Consensus 184 -----~~~~l~~~~~~LkpgG~l~i~~~~~---~~~~~~l~~~Gf~~~~~~~~~ 229 (241)
...+++++.++|||||.+++..... .++.+.+++.||+........
T Consensus 114 ~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~~~~ 167 (179)
T TIGR00537 114 DGRKVIDRFLDELPEILKEGGRVQLIQSSLNGEPDTFDKLDERGFRYEIVAERG 167 (179)
T ss_pred chHHHHHHHHHhHHHhhCCCCEEEEEEeccCChHHHHHHHHhCCCeEEEEEEee
Confidence 3578999999999999998876554 688999999999987776653
No 44
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.46 E-value=2.9e-12 Score=109.08 Aligned_cols=127 Identities=20% Similarity=0.297 Sum_probs=100.5
Q ss_pred CCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCC
Q psy1420 43 HDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPI 122 (241)
Q Consensus 43 ~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~ 122 (241)
++.+|||+|||+|..+ ..+.. ....++++|+++.+++.++.++.
T Consensus 45 ~~~~vLdlG~G~G~~~-------------~~l~~-------------------~~~~v~~iD~s~~~~~~a~~~~~---- 88 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLS-------------EPLAR-------------------LGANVTGIDASEENIEVAKLHAK---- 88 (224)
T ss_pred CCCeEEEECCCCCHHH-------------HHHHh-------------------cCCeEEEEeCCHHHHHHHHHHHH----
Confidence 4779999999999987 33333 23469999999999999988776
Q ss_pred ccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCC-CCceeEEeeeehhhccccHHHHHHHHHHhccCCcEE
Q psy1420 123 ESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIE-SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRF 201 (241)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l 201 (241)
..+.. ++++...|+.+.+.. .++||+|++...+++..++...++.+.++|+|||.+
T Consensus 89 ---------------------~~~~~--~~~~~~~d~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~~gG~l 145 (224)
T TIGR01983 89 ---------------------KDPLL--KIEYRCTSVEDLAEKGAKSFDVVTCMEVLEHVPDPQAFIRACAQLLKPGGIL 145 (224)
T ss_pred ---------------------HcCCC--ceEEEeCCHHHhhcCCCCCccEEEehhHHHhCCCHHHHHHHHHHhcCCCcEE
Confidence 32221 467777887766533 368999999999999999999999999999999998
Q ss_pred EEEecC--------------------------------HHHHHHHHHHCCCceEEEEEe
Q psy1420 202 LCLEFS--------------------------------HEEFKSMIESAGFQYVTYENL 228 (241)
Q Consensus 202 ~i~~~~--------------------------------~~~~~~~l~~~Gf~~~~~~~~ 228 (241)
++.... ..++.++++++||+++++...
T Consensus 146 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~G~~i~~~~~~ 204 (224)
T TIGR01983 146 FFSTINRTPKSYLLAIVGAEYILRIVPKGTHDWEKFIKPSELTSWLESAGLRVKDVKGL 204 (224)
T ss_pred EEEecCCCchHHHHHHHhhhhhhhcCCCCcCChhhcCCHHHHHHHHHHcCCeeeeeeeE
Confidence 876421 156889999999999887744
No 45
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.45 E-value=6.6e-13 Score=119.81 Aligned_cols=166 Identities=16% Similarity=0.148 Sum_probs=108.9
Q ss_pred chHHHHHhhh-----hhccccchhhhhhhhH-----HHHHHHHHhhcCC---CCCCeEEEEecCCCcchhHHHHHHhhhh
Q psy1420 3 LPMYEVFENV-----AKSYDTMNDAMSFGIH-----RLWKDIFIDRLGP---THDTKLLDVAGGTDPLANLLFVLRAYDQ 69 (241)
Q Consensus 3 ~~~~~~f~~~-----~~~yd~~~~~~~~~~~-----~~~~~~~~~~l~~---~~~~~vLdvG~G~G~~~~~~~~~~~~~~ 69 (241)
+.++++|+.+ +..|+..+...+..+. ..+.+.+++.+.. .++.+|||+|||+|..+
T Consensus 91 ~~V~~~Fd~~a~~~w~~iy~~~d~v~~~~l~~~~~~~~~v~~~l~~l~~~~~~~~~~VLDlGcGtG~~a----------- 159 (315)
T PLN02585 91 EVVREYFNTTGFERWRKIYGETDEVNKVQLDIRLGHAQTVEKVLLWLAEDGSLAGVTVCDAGCGTGSLA----------- 159 (315)
T ss_pred HHHHHHhcccchhhHHHhcCCccccCceeeecccChHHHHHHHHHHHHhcCCCCCCEEEEecCCCCHHH-----------
Confidence 4677888876 3455554333332222 2333445555542 35779999999999988
Q ss_pred hhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCCccccccccceecceeeeeeccccC---
Q psy1420 70 YSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKID--- 146 (241)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 146 (241)
..+.. ....++++|+|+.|++.++++.. ...
T Consensus 160 --~~la~-------------------~g~~V~gvD~S~~ml~~A~~~~~-------------------------~~~~~~ 193 (315)
T PLN02585 160 --IPLAL-------------------EGAIVSASDISAAMVAEAERRAK-------------------------EALAAL 193 (315)
T ss_pred --HHHHH-------------------CCCEEEEEECCHHHHHHHHHHHH-------------------------hccccc
Confidence 44444 34679999999999999998876 211
Q ss_pred CCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccH--HHHHHHHHHhccCCcEEEEEec------------------
Q psy1420 147 IPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRI--DKALSEAYRVLKPGGRFLCLEF------------------ 206 (241)
Q Consensus 147 ~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~i~~~------------------ 206 (241)
....++++...|+..+ .++||+|+|..+++|+++. ...++.+.+ +.++|.++....
T Consensus 194 ~~~~~~~f~~~Dl~~l---~~~fD~Vv~~~vL~H~p~~~~~~ll~~l~~-l~~g~liIs~~p~~~~~~~l~~~g~~~~g~ 269 (315)
T PLN02585 194 PPEVLPKFEANDLESL---SGKYDTVTCLDVLIHYPQDKADGMIAHLAS-LAEKRLIISFAPKTLYYDILKRIGELFPGP 269 (315)
T ss_pred ccccceEEEEcchhhc---CCCcCEEEEcCEEEecCHHHHHHHHHHHHh-hcCCEEEEEeCCcchHHHHHHHHHhhcCCC
Confidence 0112467777887654 4689999999998887653 345666664 455555443210
Q ss_pred ---------CHHHHHHHHHHCCCceEEEEEec
Q psy1420 207 ---------SHEEFKSMIESAGFQYVTYENLT 229 (241)
Q Consensus 207 ---------~~~~~~~~l~~~Gf~~~~~~~~~ 229 (241)
+.++++++++++||++...+...
T Consensus 270 ~~~~r~y~~s~eel~~lL~~AGf~v~~~~~~~ 301 (315)
T PLN02585 270 SKATRAYLHAEADVERALKKAGWKVARREMTA 301 (315)
T ss_pred CcCceeeeCCHHHHHHHHHHCCCEEEEEEEee
Confidence 12889999999999987666443
No 46
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.45 E-value=1.9e-12 Score=110.57 Aligned_cols=129 Identities=13% Similarity=0.168 Sum_probs=95.5
Q ss_pred CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCC
Q psy1420 42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP 121 (241)
Q Consensus 42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~ 121 (241)
.++.+|||+|||+|..+ ..++. ....++++|+++.+++.++++..
T Consensus 62 ~~~~~vLDvGcG~G~~~-------------~~l~~-------------------~~~~v~~~D~s~~~i~~a~~~~~--- 106 (230)
T PRK07580 62 LTGLRILDAGCGVGSLS-------------IPLAR-------------------RGAKVVASDISPQMVEEARERAP--- 106 (230)
T ss_pred CCCCEEEEEeCCCCHHH-------------HHHHH-------------------cCCEEEEEECCHHHHHHHHHHHH---
Confidence 56779999999999987 44433 23469999999999999998876
Q ss_pred CccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhcccc--HHHHHHHHHHhccCCc
Q psy1420 122 IESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTR--IDKALSEAYRVLKPGG 199 (241)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~--~~~~l~~~~~~LkpgG 199 (241)
..+.. .++.+..+|+.. ..++||+|++..+++++++ ....++.+.+.+++++
T Consensus 107 ----------------------~~~~~-~~i~~~~~d~~~---~~~~fD~v~~~~~l~~~~~~~~~~~l~~l~~~~~~~~ 160 (230)
T PRK07580 107 ----------------------EAGLA-GNITFEVGDLES---LLGRFDTVVCLDVLIHYPQEDAARMLAHLASLTRGSL 160 (230)
T ss_pred ----------------------hcCCc-cCcEEEEcCchh---ccCCcCEEEEcchhhcCCHHHHHHHHHHHHhhcCCeE
Confidence 43432 367888888433 3568999999999987664 4678888888776555
Q ss_pred EEEEEec--------------------------CHHHHHHHHHHCCCceEEEEEecCc
Q psy1420 200 RFLCLEF--------------------------SHEEFKSMIESAGFQYVTYENLTFG 231 (241)
Q Consensus 200 ~l~i~~~--------------------------~~~~~~~~l~~~Gf~~~~~~~~~~~ 231 (241)
.+.+... +..++.++++++||++........|
T Consensus 161 ~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~ 218 (230)
T PRK07580 161 IFTFAPYTPLLALLHWIGGLFPGPSRTTRIYPHREKGIRRALAAAGFKVVRTERISSG 218 (230)
T ss_pred EEEECCccHHHHHHHHhccccCCccCCCCccccCHHHHHHHHHHCCCceEeeeeccch
Confidence 5443211 1167899999999999988876544
No 47
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.45 E-value=1.3e-12 Score=116.03 Aligned_cols=139 Identities=18% Similarity=0.198 Sum_probs=104.7
Q ss_pred HHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHH
Q psy1420 33 DIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRF 112 (241)
Q Consensus 33 ~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~ 112 (241)
+++...+..-.|.+|||||||.|+.+ .+++. .....++|+|+++.....
T Consensus 105 ~rl~p~l~~L~gk~VLDIGC~nGY~~-------------frM~~------------------~GA~~ViGiDP~~lf~~Q 153 (315)
T PF08003_consen 105 DRLLPHLPDLKGKRVLDIGCNNGYYS-------------FRMLG------------------RGAKSVIGIDPSPLFYLQ 153 (315)
T ss_pred HHHHhhhCCcCCCEEEEecCCCcHHH-------------HHHhh------------------cCCCEEEEECCChHHHHH
Confidence 44666666667889999999999988 55554 134569999999886644
Q ss_pred HHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHHHHH
Q psy1420 113 LEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAY 192 (241)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~~~ 192 (241)
...... -.+.. ..+..+...++.+|. .+.||+|+|..++.|..+|...|..++
T Consensus 154 F~~i~~-------------------------~lg~~-~~~~~lplgvE~Lp~-~~~FDtVF~MGVLYHrr~Pl~~L~~Lk 206 (315)
T PF08003_consen 154 FEAIKH-------------------------FLGQD-PPVFELPLGVEDLPN-LGAFDTVFSMGVLYHRRSPLDHLKQLK 206 (315)
T ss_pred HHHHHH-------------------------HhCCC-ccEEEcCcchhhccc-cCCcCEEEEeeehhccCCHHHHHHHHH
Confidence 322211 01111 234455567788876 678999999999999999999999999
Q ss_pred HhccCCcEEEEEecC--------------------------HHHHHHHHHHCCCceEEEEEec
Q psy1420 193 RVLKPGGRFLCLEFS--------------------------HEEFKSMIESAGFQYVTYENLT 229 (241)
Q Consensus 193 ~~LkpgG~l~i~~~~--------------------------~~~~~~~l~~~Gf~~~~~~~~~ 229 (241)
..|+|||.|++-+.. ...+..+++++||..+++.+.+
T Consensus 207 ~~L~~gGeLvLETlvi~g~~~~~L~P~~rYa~m~nv~FiPs~~~L~~wl~r~gF~~v~~v~~~ 269 (315)
T PF08003_consen 207 DSLRPGGELVLETLVIDGDENTVLVPEDRYAKMRNVWFIPSVAALKNWLERAGFKDVRCVDVS 269 (315)
T ss_pred HhhCCCCEEEEEEeeecCCCceEEccCCcccCCCceEEeCCHHHHHHHHHHcCCceEEEecCc
Confidence 999999999974421 1999999999999998887653
No 48
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.45 E-value=3.6e-12 Score=106.38 Aligned_cols=127 Identities=15% Similarity=0.250 Sum_probs=95.7
Q ss_pred CCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCC
Q psy1420 43 HDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPI 122 (241)
Q Consensus 43 ~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~ 122 (241)
++.+|||+|||+|..+ ..++. . ....+++++|.++.+++.+++++.
T Consensus 42 ~~~~vLDiGcGtG~~s-------------~~la~----~-------------~~~~~V~~iD~s~~~~~~a~~~~~---- 87 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPG-------------IPLAI----A-------------RPELKLTLLESNHKKVAFLREVKA---- 87 (181)
T ss_pred CCCeEEEecCCCCccH-------------HHHHH----H-------------CCCCeEEEEeCcHHHHHHHHHHHH----
Confidence 4779999999999988 33222 0 024679999999999999998887
Q ss_pred ccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHHHHHHhccCCcEEE
Q psy1420 123 ESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFL 202 (241)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~ 202 (241)
+.++. +++++++|+.+.+ ..++||+|++.. +.++...++.+.++|+|||+++
T Consensus 88 ---------------------~~~~~--~i~~i~~d~~~~~-~~~~fD~I~s~~----~~~~~~~~~~~~~~LkpgG~lv 139 (181)
T TIGR00138 88 ---------------------ELGLN--NVEIVNGRAEDFQ-HEEQFDVITSRA----LASLNVLLELTLNLLKVGGYFL 139 (181)
T ss_pred ---------------------HhCCC--CeEEEecchhhcc-ccCCccEEEehh----hhCHHHHHHHHHHhcCCCCEEE
Confidence 55554 5899999998864 356899998854 4456678888999999999998
Q ss_pred EEecCH--HHHHHHHHH---CCCceEEEEEecCc
Q psy1420 203 CLEFSH--EEFKSMIES---AGFQYVTYENLTFG 231 (241)
Q Consensus 203 i~~~~~--~~~~~~l~~---~Gf~~~~~~~~~~~ 231 (241)
+..-.. .++..+.+. .||+.++....+..
T Consensus 140 i~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~ 173 (181)
T TIGR00138 140 AYKGKKYLDEIEEAKRKCQVLGVEPLEVPPLTGP 173 (181)
T ss_pred EEcCCCcHHHHHHHHHhhhhcCceEeeccccCCC
Confidence 865333 555555555 89998888876543
No 49
>PRK14968 putative methyltransferase; Provisional
Probab=99.44 E-value=4.1e-12 Score=104.89 Aligned_cols=142 Identities=23% Similarity=0.281 Sum_probs=100.7
Q ss_pred CCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcC
Q psy1420 41 PTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEEL 120 (241)
Q Consensus 41 ~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~ 120 (241)
..++.+|||+|||+|..+ ..++. ....++++|+++.+++.+++++.
T Consensus 21 ~~~~~~vLd~G~G~G~~~-------------~~l~~-------------------~~~~v~~~D~s~~~~~~a~~~~~-- 66 (188)
T PRK14968 21 DKKGDRVLEVGTGSGIVA-------------IVAAK-------------------NGKKVVGVDINPYAVECAKCNAK-- 66 (188)
T ss_pred ccCCCEEEEEccccCHHH-------------HHHHh-------------------hcceEEEEECCHHHHHHHHHHHH--
Confidence 356779999999999988 44443 24679999999999999988876
Q ss_pred CCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhc--------------------
Q psy1420 121 PIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRN-------------------- 180 (241)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~-------------------- 180 (241)
..+..+..+.++..|..+. ..+.+||+|+++.....
T Consensus 67 -----------------------~~~~~~~~~~~~~~d~~~~-~~~~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~ 122 (188)
T PRK14968 67 -----------------------LNNIRNNGVEVIRSDLFEP-FRGDKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKD 122 (188)
T ss_pred -----------------------HcCCCCcceEEEecccccc-ccccCceEEEECCCcCCCCchhhhhhhhhhhhccCcC
Confidence 3333312266777776553 33457999997643321
Q ss_pred -cccHHHHHHHHHHhccCCcEEEEEecC---HHHHHHHHHHCCCceEEEEE--ecCceeEEEeeec
Q psy1420 181 -VTRIDKALSEAYRVLKPGGRFLCLEFS---HEEFKSMIESAGFQYVTYEN--LTFGVVAIHSGFK 240 (241)
Q Consensus 181 -~~~~~~~l~~~~~~LkpgG~l~i~~~~---~~~~~~~l~~~Gf~~~~~~~--~~~~~~~~~~~~~ 240 (241)
...+..+++.+.++|||||.+++...+ .+.+.++++++||++..+.. ..++.+.+..++|
T Consensus 123 ~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 188 (188)
T PRK14968 123 GREVIDRFLDEVGRYLKPGGRILLLQSSLTGEDEVLEYLEKLGFEAEVVAEEKFPFEELIVLELVK 188 (188)
T ss_pred hHHHHHHHHHHHHHhcCCCeEEEEEEcccCCHHHHHHHHHHCCCeeeeeeecccCCceEEEEEEeC
Confidence 112467899999999999998776443 38899999999998776544 3456655555543
No 50
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.44 E-value=1.2e-12 Score=116.55 Aligned_cols=121 Identities=21% Similarity=0.265 Sum_probs=93.3
Q ss_pred CCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCC
Q psy1420 43 HDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPI 122 (241)
Q Consensus 43 ~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~ 122 (241)
++.+|||+|||+|.++ ..++. .+.+++++|+|+.+++.+++++.
T Consensus 120 ~~~~vLDlGcG~G~~~-------------~~la~-------------------~g~~V~avD~s~~ai~~~~~~~~---- 163 (287)
T PRK12335 120 KPGKALDLGCGQGRNS-------------LYLAL-------------------LGFDVTAVDINQQSLENLQEIAE---- 163 (287)
T ss_pred CCCCEEEeCCCCCHHH-------------HHHHH-------------------CCCEEEEEECCHHHHHHHHHHHH----
Confidence 4459999999999988 33333 35689999999999999998877
Q ss_pred ccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccc--cHHHHHHHHHHhccCCcE
Q psy1420 123 ESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVT--RIDKALSEAYRVLKPGGR 200 (241)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~--~~~~~l~~~~~~LkpgG~ 200 (241)
..++ ++++...|+...+. +++||+|++..++++++ +...+++++.++|+|||+
T Consensus 164 ---------------------~~~l---~v~~~~~D~~~~~~-~~~fD~I~~~~vl~~l~~~~~~~~l~~~~~~LkpgG~ 218 (287)
T PRK12335 164 ---------------------KENL---NIRTGLYDINSASI-QEEYDFILSTVVLMFLNRERIPAIIKNMQEHTNPGGY 218 (287)
T ss_pred ---------------------HcCC---ceEEEEechhcccc-cCCccEEEEcchhhhCCHHHHHHHHHHHHHhcCCCcE
Confidence 4443 36777778776554 57899999999998775 567899999999999999
Q ss_pred EEEEe----------------cCHHHHHHHHHHCCCceEEEE
Q psy1420 201 FLCLE----------------FSHEEFKSMIESAGFQYVTYE 226 (241)
Q Consensus 201 l~i~~----------------~~~~~~~~~l~~~Gf~~~~~~ 226 (241)
+++.. ++.+++++.+.. |+++++.
T Consensus 219 ~l~v~~~~~~~~~~~~p~~~~~~~~el~~~~~~--~~i~~~~ 258 (287)
T PRK12335 219 NLIVCAMDTEDYPCPMPFSFTFKEGELKDYYQD--WEIVKYN 258 (287)
T ss_pred EEEEEecccccCCCCCCCCcccCHHHHHHHhCC--CEEEEEe
Confidence 76643 112778887754 8887764
No 51
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.44 E-value=1.1e-12 Score=111.05 Aligned_cols=131 Identities=18% Similarity=0.147 Sum_probs=97.9
Q ss_pred HHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHH
Q psy1420 35 FIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLE 114 (241)
Q Consensus 35 ~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~ 114 (241)
+.+.+.. ++.+|||+|||+|..+ ..++. .. +...++++|+++.+++.+.
T Consensus 33 ~~~~~~~-~~~~VLDiGcGtG~~~-------------~~la~----~~-------------p~~~v~gVD~s~~~i~~a~ 81 (202)
T PRK00121 33 WAELFGN-DAPIHLEIGFGKGEFL-------------VEMAK----AN-------------PDINFIGIEVHEPGVGKAL 81 (202)
T ss_pred HHHHcCC-CCCeEEEEccCCCHHH-------------HHHHH----HC-------------CCccEEEEEechHHHHHHH
Confidence 3344444 5679999999999988 33322 10 2457999999999999999
Q ss_pred HHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEeccc-CCCC--CCCCceeEEeeeehhhccc--------c
Q psy1420 115 ANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANA-EELP--IESDSYSAYTIAFGIRNVT--------R 183 (241)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~-~~~~--~~~~~~D~V~~~~~l~~~~--------~ 183 (241)
+++. ..++. +++++++|+ ..++ +++++||+|++.+...+.. .
T Consensus 82 ~~~~-------------------------~~~~~--~v~~~~~d~~~~l~~~~~~~~~D~V~~~~~~p~~~~~~~~~~~~ 134 (202)
T PRK00121 82 KKIE-------------------------EEGLT--NLRLLCGDAVEVLLDMFPDGSLDRIYLNFPDPWPKKRHHKRRLV 134 (202)
T ss_pred HHHH-------------------------HcCCC--CEEEEecCHHHHHHHHcCccccceEEEECCCCCCCccccccccC
Confidence 8877 44443 688999998 6655 5567899999876543221 1
Q ss_pred HHHHHHHHHHhccCCcEEEEEecCH---HHHHHHHHHCCCceE
Q psy1420 184 IDKALSEAYRVLKPGGRFLCLEFSH---EEFKSMIESAGFQYV 223 (241)
Q Consensus 184 ~~~~l~~~~~~LkpgG~l~i~~~~~---~~~~~~l~~~Gf~~~ 223 (241)
...+++++.++|||||++++..... .++.+.+++.|+...
T Consensus 135 ~~~~l~~i~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~g~~~~ 177 (202)
T PRK00121 135 QPEFLALYARKLKPGGEIHFATDWEGYAEYMLEVLSAEGGFLV 177 (202)
T ss_pred CHHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHhCccccc
Confidence 4689999999999999999976555 678888899998644
No 52
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.43 E-value=1.5e-12 Score=123.23 Aligned_cols=136 Identities=12% Similarity=0.155 Sum_probs=104.9
Q ss_pred HHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHH
Q psy1420 32 KDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLR 111 (241)
Q Consensus 32 ~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~ 111 (241)
...+++.+...++.+|||+|||+|..+ ..++. ...+++++|+++.+++
T Consensus 26 ~~~il~~l~~~~~~~vLDlGcG~G~~~-------------~~la~-------------------~~~~v~giD~s~~~l~ 73 (475)
T PLN02336 26 RPEILSLLPPYEGKSVLELGAGIGRFT-------------GELAK-------------------KAGQVIALDFIESVIK 73 (475)
T ss_pred hhHHHhhcCccCCCEEEEeCCCcCHHH-------------HHHHh-------------------hCCEEEEEeCCHHHHH
Confidence 455666666667779999999999998 44443 2457999999999998
Q ss_pred HHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccC--CCCCCCCceeEEeeeehhhcccc--HHHH
Q psy1420 112 FLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAE--ELPIESDSYSAYTIAFGIRNVTR--IDKA 187 (241)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~--~~~~~~~~~D~V~~~~~l~~~~~--~~~~ 187 (241)
.+..... .. +++.+++.|+. ..+++.++||+|++.++++++++ ...+
T Consensus 74 ~a~~~~~---------------------------~~--~~i~~~~~d~~~~~~~~~~~~fD~I~~~~~l~~l~~~~~~~~ 124 (475)
T PLN02336 74 KNESING---------------------------HY--KNVKFMCADVTSPDLNISDGSVDLIFSNWLLMYLSDKEVENL 124 (475)
T ss_pred HHHHHhc---------------------------cC--CceEEEEecccccccCCCCCCEEEEehhhhHHhCCHHHHHHH
Confidence 7654321 11 36788888886 35666789999999999999877 5789
Q ss_pred HHHHHHhccCCcEEEEEecC------------------HHHHHHHHHHCCCceEEEEEe
Q psy1420 188 LSEAYRVLKPGGRFLCLEFS------------------HEEFKSMIESAGFQYVTYENL 228 (241)
Q Consensus 188 l~~~~~~LkpgG~l~i~~~~------------------~~~~~~~l~~~Gf~~~~~~~~ 228 (241)
++++.++|||||++++.+.. ...+.+++.++||...+...+
T Consensus 125 l~~~~r~Lk~gG~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~ 183 (475)
T PLN02336 125 AERMVKWLKVGGYIFFRESCFHQSGDSKRKNNPTHYREPRFYTKVFKECHTRDEDGNSF 183 (475)
T ss_pred HHHHHHhcCCCeEEEEEeccCCCCCcccccCCCCeecChHHHHHHHHHheeccCCCCEE
Confidence 99999999999999886421 188889999999987655544
No 53
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.43 E-value=4.7e-12 Score=105.55 Aligned_cols=138 Identities=15% Similarity=0.193 Sum_probs=102.4
Q ss_pred HHHHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChH
Q psy1420 29 RLWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNP 108 (241)
Q Consensus 29 ~~~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~ 108 (241)
...+..+...+...++.+|||+|||+|..+ ..++. . . ...+++++|+++.
T Consensus 17 ~~~r~~~~~~l~~~~~~~vLDiG~G~G~~~-------------~~la~----~---~----------~~~~v~~vD~s~~ 66 (187)
T PRK08287 17 EEVRALALSKLELHRAKHLIDVGAGTGSVS-------------IEAAL----Q---F----------PSLQVTAIERNPD 66 (187)
T ss_pred HHHHHHHHHhcCCCCCCEEEEECCcCCHHH-------------HHHHH----H---C----------CCCEEEEEECCHH
Confidence 345566667777778889999999999988 33332 0 0 2468999999999
Q ss_pred hHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHH
Q psy1420 109 RLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKAL 188 (241)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l 188 (241)
+++.+++++. +.++. +++++.+|... +. .++||+|++..... .....+
T Consensus 67 ~~~~a~~n~~-------------------------~~~~~--~i~~~~~d~~~-~~-~~~~D~v~~~~~~~---~~~~~l 114 (187)
T PRK08287 67 ALRLIKENRQ-------------------------RFGCG--NIDIIPGEAPI-EL-PGKADAIFIGGSGG---NLTAII 114 (187)
T ss_pred HHHHHHHHHH-------------------------HhCCC--CeEEEecCchh-hc-CcCCCEEEECCCcc---CHHHHH
Confidence 9999998887 44443 57888887642 23 35799999875443 456788
Q ss_pred HHHHHhccCCcEEEEEecCH---HHHHHHHHHCCCceEEEEEe
Q psy1420 189 SEAYRVLKPGGRFLCLEFSH---EEFKSMIESAGFQYVTYENL 228 (241)
Q Consensus 189 ~~~~~~LkpgG~l~i~~~~~---~~~~~~l~~~Gf~~~~~~~~ 228 (241)
+.+.+.|+|||++++..... .++.+++++.||..++....
T Consensus 115 ~~~~~~Lk~gG~lv~~~~~~~~~~~~~~~l~~~g~~~~~~~~~ 157 (187)
T PRK08287 115 DWSLAHLHPGGRLVLTFILLENLHSALAHLEKCGVSELDCVQL 157 (187)
T ss_pred HHHHHhcCCCeEEEEEEecHhhHHHHHHHHHHCCCCcceEEEE
Confidence 99999999999998865333 77888999999977665444
No 54
>PRK04266 fibrillarin; Provisional
Probab=99.43 E-value=5.2e-12 Score=109.04 Aligned_cols=137 Identities=17% Similarity=0.169 Sum_probs=97.7
Q ss_pred hcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHH
Q psy1420 38 RLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANA 117 (241)
Q Consensus 38 ~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~ 117 (241)
.+..+++.+|||+|||+|.++ ..++. .. ....++++|+++.|++.+.+.+
T Consensus 67 ~l~i~~g~~VlD~G~G~G~~~-------------~~la~----~v-------------~~g~V~avD~~~~ml~~l~~~a 116 (226)
T PRK04266 67 NFPIKKGSKVLYLGAASGTTV-------------SHVSD----IV-------------EEGVVYAVEFAPRPMRELLEVA 116 (226)
T ss_pred hCCCCCCCEEEEEccCCCHHH-------------HHHHH----hc-------------CCCeEEEEECCHHHHHHHHHHh
Confidence 467789999999999999988 33333 11 1347999999999999877766
Q ss_pred hcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCC----CCCCCceeEEeeeehhhccccH---HHHHHH
Q psy1420 118 EELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL----PIESDSYSAYTIAFGIRNVTRI---DKALSE 190 (241)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~----~~~~~~~D~V~~~~~l~~~~~~---~~~l~~ 190 (241)
. +. .++.++.+|+... +. .++||+|++. ++++ ..++++
T Consensus 117 ~-------------------------~~----~nv~~i~~D~~~~~~~~~l-~~~~D~i~~d-----~~~p~~~~~~L~~ 161 (226)
T PRK04266 117 E-------------------------ER----KNIIPILADARKPERYAHV-VEKVDVIYQD-----VAQPNQAEIAIDN 161 (226)
T ss_pred h-------------------------hc----CCcEEEECCCCCcchhhhc-cccCCEEEEC-----CCChhHHHHHHHH
Confidence 5 21 2577778887642 12 3569999853 3333 356899
Q ss_pred HHHhccCCcEEEE------EecCH------HHHHHHHHHCCCceEEEEEecC--ceeEEEeee
Q psy1420 191 AYRVLKPGGRFLC------LEFSH------EEFKSMIESAGFQYVTYENLTF--GVVAIHSGF 239 (241)
Q Consensus 191 ~~~~LkpgG~l~i------~~~~~------~~~~~~l~~~Gf~~~~~~~~~~--~~~~~~~~~ 239 (241)
++++|||||++++ .++.. ++..++++++||+.++..+... ..+.+.+++
T Consensus 162 ~~r~LKpGG~lvI~v~~~~~d~~~~~~~~~~~~~~~l~~aGF~~i~~~~l~p~~~~h~~~v~~ 224 (226)
T PRK04266 162 AEFFLKDGGYLLLAIKARSIDVTKDPKEIFKEEIRKLEEGGFEILEVVDLEPYHKDHAAVVAR 224 (226)
T ss_pred HHHhcCCCcEEEEEEecccccCcCCHHHHHHHHHHHHHHcCCeEEEEEcCCCCcCCeEEEEEE
Confidence 9999999999999 44333 3456999999999999888742 235555554
No 55
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.41 E-value=7.5e-14 Score=104.32 Aligned_cols=97 Identities=21% Similarity=0.269 Sum_probs=59.4
Q ss_pred EEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCCccccc
Q psy1420 48 LDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIESDSY 127 (241)
Q Consensus 48 LdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~ 127 (241)
||+|||+|..+ ..++. . .+..+++++|+|+.+++.++++..
T Consensus 1 LdiGcG~G~~~-------------~~l~~----~-------------~~~~~~~~~D~s~~~l~~a~~~~~--------- 41 (99)
T PF08242_consen 1 LDIGCGTGRLL-------------RALLE----E-------------LPDARYTGVDISPSMLERARERLA--------- 41 (99)
T ss_dssp -EESTTTS-TT-------------TTHHH----H-------------C-EEEEEEEESSSSTTSTTCCCHH---------
T ss_pred CEeCccChHHH-------------HHHHH----h-------------CCCCEEEEEECCHHHHHHHHHHhh---------
Confidence 79999999998 44444 1 035689999999999988877766
Q ss_pred cccceecceeeeeeccccCCCCCCeeEEecccCCCC--CCCCceeEEeeeehhhccccHHHHHHHHHHhccCCcEE
Q psy1420 128 SAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELP--IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRF 201 (241)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l 201 (241)
+.... .......+..+.. ...++||+|++..++++++++..+++.++++|||||+|
T Consensus 42 ----------------~~~~~--~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 42 ----------------ELGND--NFERLRFDVLDLFDYDPPESFDLVVASNVLHHLEDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp ----------------HCT-----EEEEE--SSS---CCC----SEEEEE-TTS--S-HHHHHHHHTTT-TSS-EE
T ss_pred ----------------hcCCc--ceeEEEeecCChhhcccccccceehhhhhHhhhhhHHHHHHHHHHHcCCCCCC
Confidence 22211 2233333333321 11258999999999999999999999999999999986
No 56
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.40 E-value=3.9e-12 Score=117.69 Aligned_cols=131 Identities=15% Similarity=0.193 Sum_probs=98.4
Q ss_pred HHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHH
Q psy1420 33 DIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRF 112 (241)
Q Consensus 33 ~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~ 112 (241)
+.+++.+..+++.+|||+|||+|..+ ..++. ....+++++|+|+.+++.
T Consensus 157 ~~l~~~l~l~~g~rVLDIGcG~G~~a-------------~~la~------------------~~g~~V~giDlS~~~l~~ 205 (383)
T PRK11705 157 DLICRKLQLKPGMRVLDIGCGWGGLA-------------RYAAE------------------HYGVSVVGVTISAEQQKL 205 (383)
T ss_pred HHHHHHhCCCCCCEEEEeCCCccHHH-------------HHHHH------------------HCCCEEEEEeCCHHHHHH
Confidence 44556677788999999999999988 33333 134589999999999999
Q ss_pred HHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccc--cHHHHHHH
Q psy1420 113 LEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVT--RIDKALSE 190 (241)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~--~~~~~l~~ 190 (241)
+++++. . . .+++...|...+ +++||+|++...++++. ++...+++
T Consensus 206 A~~~~~-------------------------~--l---~v~~~~~D~~~l---~~~fD~Ivs~~~~ehvg~~~~~~~l~~ 252 (383)
T PRK11705 206 AQERCA-------------------------G--L---PVEIRLQDYRDL---NGQFDRIVSVGMFEHVGPKNYRTYFEV 252 (383)
T ss_pred HHHHhc-------------------------c--C---eEEEEECchhhc---CCCCCEEEEeCchhhCChHHHHHHHHH
Confidence 998765 1 1 256677776654 36799999999888875 45789999
Q ss_pred HHHhccCCcEEEEEecCH------------------------HHHHHHHHHCCCceEEEEEe
Q psy1420 191 AYRVLKPGGRFLCLEFSH------------------------EEFKSMIESAGFQYVTYENL 228 (241)
Q Consensus 191 ~~~~LkpgG~l~i~~~~~------------------------~~~~~~l~~~Gf~~~~~~~~ 228 (241)
+.++|||||++++.++.. .++...++ .||.+.+++++
T Consensus 253 i~r~LkpGG~lvl~~i~~~~~~~~~~~~i~~yifp~g~lps~~~i~~~~~-~~~~v~d~~~~ 313 (383)
T PRK11705 253 VRRCLKPDGLFLLHTIGSNKTDTNVDPWINKYIFPNGCLPSVRQIAQASE-GLFVMEDWHNF 313 (383)
T ss_pred HHHHcCCCcEEEEEEccCCCCCCCCCCCceeeecCCCcCCCHHHHHHHHH-CCcEEEEEecC
Confidence 999999999999865322 45555544 57887777654
No 57
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.40 E-value=1.7e-12 Score=114.39 Aligned_cols=137 Identities=15% Similarity=0.109 Sum_probs=88.9
Q ss_pred CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhc--
Q psy1420 42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEE-- 119 (241)
Q Consensus 42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~-- 119 (241)
.++.+|+|+|||||..+ ..++-.+.+...... ....+++|+|+|+.+++.|++.+..
T Consensus 98 ~~~~ri~d~GCgtGee~-------------YslA~~l~e~~~~~~--------~~~~~I~g~Dis~~~L~~Ar~~~y~~~ 156 (264)
T smart00138 98 GRRVRIWSAGCSTGEEP-------------YSLAMLLAETLPKAR--------EPDVKILATDIDLKALEKARAGIYPER 156 (264)
T ss_pred CCCEEEEeccccCChHH-------------HHHHHHHHHHhhhcC--------CCCeEEEEEECCHHHHHHHHcCCCCHH
Confidence 45679999999999876 222222222211110 0246899999999999999876430
Q ss_pred ----CCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccH--HHHHHHHHH
Q psy1420 120 ----LPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRI--DKALSEAYR 193 (241)
Q Consensus 120 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~--~~~l~~~~~ 193 (241)
+|.. + ...+.....+.... +..+. .++.|.+.|+...+.+.++||+|+|.+++++++++ .++++++++
T Consensus 157 ~~~~~~~~---~-~~~yf~~~~~~~~v-~~~ir-~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~ 230 (264)
T smart00138 157 ELEDLPKA---L-LARYFSRVEDKYRV-KPELK-ERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAE 230 (264)
T ss_pred HHhcCCHH---H-HhhhEEeCCCeEEE-ChHHh-CcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHH
Confidence 0000 0 00011011111111 11222 36889999999887767899999999999998654 589999999
Q ss_pred hccCCcEEEEEe
Q psy1420 194 VLKPGGRFLCLE 205 (241)
Q Consensus 194 ~LkpgG~l~i~~ 205 (241)
.|+|||+|++..
T Consensus 231 ~L~pGG~L~lg~ 242 (264)
T smart00138 231 ALKPGGYLFLGH 242 (264)
T ss_pred HhCCCeEEEEEC
Confidence 999999999854
No 58
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.39 E-value=1.2e-11 Score=104.25 Aligned_cols=134 Identities=17% Similarity=0.308 Sum_probs=99.2
Q ss_pred HHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhH
Q psy1420 31 WKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRL 110 (241)
Q Consensus 31 ~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~ 110 (241)
.+...+..+...++.+|||+|||+|..+ ..++..++ ...+++++|+++.++
T Consensus 28 ~r~~~l~~l~~~~~~~vlDlG~GtG~~s-------------~~~a~~~~----------------~~~~v~avD~~~~~~ 78 (198)
T PRK00377 28 IRALALSKLRLRKGDMILDIGCGTGSVT-------------VEASLLVG----------------ETGKVYAVDKDEKAI 78 (198)
T ss_pred HHHHHHHHcCCCCcCEEEEeCCcCCHHH-------------HHHHHHhC----------------CCCEEEEEECCHHHH
Confidence 3444556677788999999999999988 44333111 246799999999999
Q ss_pred HHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCC-CCCCCceeEEeeeehhhccccHHHHHH
Q psy1420 111 RFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL-PIESDSYSAYTIAFGIRNVTRIDKALS 189 (241)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~D~V~~~~~l~~~~~~~~~l~ 189 (241)
+.+++++. ..++. .++.++..|+.+. +...++||+|++.. ...++..+++
T Consensus 79 ~~a~~n~~-------------------------~~g~~-~~v~~~~~d~~~~l~~~~~~~D~V~~~~---~~~~~~~~l~ 129 (198)
T PRK00377 79 NLTRRNAE-------------------------KFGVL-NNIVLIKGEAPEILFTINEKFDRIFIGG---GSEKLKEIIS 129 (198)
T ss_pred HHHHHHHH-------------------------HhCCC-CCeEEEEechhhhHhhcCCCCCEEEECC---CcccHHHHHH
Confidence 99999887 44533 4678888887653 32246799999854 2356778999
Q ss_pred HHHHhccCCcEEEEEecCH---HHHHHHHHHCCCce
Q psy1420 190 EAYRVLKPGGRFLCLEFSH---EEFKSMIESAGFQY 222 (241)
Q Consensus 190 ~~~~~LkpgG~l~i~~~~~---~~~~~~l~~~Gf~~ 222 (241)
.+.++|||||++++..... .+..+.+++.||..
T Consensus 130 ~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~g~~~ 165 (198)
T PRK00377 130 ASWEIIKKGGRIVIDAILLETVNNALSALENIGFNL 165 (198)
T ss_pred HHHHHcCCCcEEEEEeecHHHHHHHHHHHHHcCCCe
Confidence 9999999999998744333 67778888999953
No 59
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.39 E-value=2.3e-11 Score=101.21 Aligned_cols=139 Identities=23% Similarity=0.323 Sum_probs=109.8
Q ss_pred HHHHHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCCh
Q psy1420 28 HRLWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPN 107 (241)
Q Consensus 28 ~~~~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~ 107 (241)
.+..+...+..+.++|+.+++|+|||||..+ ..++- ++ +..+++++|.++
T Consensus 19 K~EIRal~ls~L~~~~g~~l~DIGaGtGsi~-------------iE~a~-~~----------------p~~~v~AIe~~~ 68 (187)
T COG2242 19 KEEIRALTLSKLRPRPGDRLWDIGAGTGSIT-------------IEWAL-AG----------------PSGRVIAIERDE 68 (187)
T ss_pred HHHHHHHHHHhhCCCCCCEEEEeCCCccHHH-------------HHHHH-hC----------------CCceEEEEecCH
Confidence 3456677788889999999999999999999 66551 11 578999999999
Q ss_pred HhHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHH
Q psy1420 108 PRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKA 187 (241)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~ 187 (241)
.+++..++++. +.+++ ++.++.+++.+.-....++|.|+...+ ...+..
T Consensus 69 ~a~~~~~~N~~-------------------------~fg~~--n~~vv~g~Ap~~L~~~~~~daiFIGGg----~~i~~i 117 (187)
T COG2242 69 EALELIERNAA-------------------------RFGVD--NLEVVEGDAPEALPDLPSPDAIFIGGG----GNIEEI 117 (187)
T ss_pred HHHHHHHHHHH-------------------------HhCCC--cEEEEeccchHhhcCCCCCCEEEECCC----CCHHHH
Confidence 99999999999 77755 899999997764211227999998876 356788
Q ss_pred HHHHHHhccCCcEEEEEecCH---HHHHHHHHHCCC-ceEEEEE
Q psy1420 188 LSEAYRVLKPGGRFLCLEFSH---EEFKSMIESAGF-QYVTYEN 227 (241)
Q Consensus 188 l~~~~~~LkpgG~l~i~~~~~---~~~~~~l~~~Gf-~~~~~~~ 227 (241)
|+.+-..|||||++++.-... ....+.+++.|+ +++++..
T Consensus 118 le~~~~~l~~ggrlV~naitlE~~~~a~~~~~~~g~~ei~~v~i 161 (187)
T COG2242 118 LEAAWERLKPGGRLVANAITLETLAKALEALEQLGGREIVQVQI 161 (187)
T ss_pred HHHHHHHcCcCCeEEEEeecHHHHHHHHHHHHHcCCceEEEEEe
Confidence 999999999999999865444 566788899999 5555443
No 60
>PRK06922 hypothetical protein; Provisional
Probab=99.38 E-value=3.3e-12 Score=123.71 Aligned_cols=110 Identities=22% Similarity=0.281 Sum_probs=85.8
Q ss_pred cCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHh
Q psy1420 39 LGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAE 118 (241)
Q Consensus 39 l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~ 118 (241)
....++.+|||+|||+|..+ ..++. . . +...++|+|+|+.|++.++++..
T Consensus 414 ~d~~~g~rVLDIGCGTG~ls-------------~~LA~----~---~----------P~~kVtGIDIS~~MLe~Ararl~ 463 (677)
T PRK06922 414 LDYIKGDTIVDVGAGGGVML-------------DMIEE----E---T----------EDKRIYGIDISENVIDTLKKKKQ 463 (677)
T ss_pred hhhcCCCEEEEeCCCCCHHH-------------HHHHH----h---C----------CCCEEEEEECCHHHHHHHHHHhh
Confidence 34456789999999999877 33322 0 1 35689999999999999988765
Q ss_pred cCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCC--CCCCceeEEeeeehhhcc-------------cc
Q psy1420 119 ELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELP--IESDSYSAYTIAFGIRNV-------------TR 183 (241)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~D~V~~~~~l~~~-------------~~ 183 (241)
..+ .++.++++|+..+| +++++||+|+++.++|++ .+
T Consensus 464 -------------------------~~g---~~ie~I~gDa~dLp~~fedeSFDvVVsn~vLH~L~syIp~~g~~f~~ed 515 (677)
T PRK06922 464 -------------------------NEG---RSWNVIKGDAINLSSSFEKESVDTIVYSSILHELFSYIEYEGKKFNHEV 515 (677)
T ss_pred -------------------------hcC---CCeEEEEcchHhCccccCCCCEEEEEEchHHHhhhhhcccccccccHHH
Confidence 222 24677889988776 667899999999988864 25
Q ss_pred HHHHHHHHHHhccCCcEEEEEec
Q psy1420 184 IDKALSEAYRVLKPGGRFLCLEF 206 (241)
Q Consensus 184 ~~~~l~~~~~~LkpgG~l~i~~~ 206 (241)
+.+++++++++|||||++++.+.
T Consensus 516 l~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 516 IKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred HHHHHHHHHHHcCCCcEEEEEeC
Confidence 67999999999999999999873
No 61
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.37 E-value=1.1e-11 Score=95.14 Aligned_cols=116 Identities=20% Similarity=0.274 Sum_probs=85.5
Q ss_pred HHHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHh
Q psy1420 30 LWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPR 109 (241)
Q Consensus 30 ~~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~ 109 (241)
..+..+.+.+...++.+|||+|||+|..+ ..++. . .+..+++++|+++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~vldlG~G~G~~~-------------~~l~~----~-------------~~~~~v~~vD~s~~~ 55 (124)
T TIGR02469 6 EVRALTLSKLRLRPGDVLWDIGAGSGSIT-------------IEAAR----L-------------VPNGRVYAIERNPEA 55 (124)
T ss_pred HHHHHHHHHcCCCCCCEEEEeCCCCCHHH-------------HHHHH----H-------------CCCceEEEEcCCHHH
Confidence 44566677777777789999999999988 43333 0 024679999999999
Q ss_pred HHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCC-CCCCCCceeEEeeeehhhccccHHHHH
Q psy1420 110 LRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEE-LPIESDSYSAYTIAFGIRNVTRIDKAL 188 (241)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~D~V~~~~~l~~~~~~~~~l 188 (241)
++.+++++. ..+.. ++++...|+.. .+...++||.|++..... ...+++
T Consensus 56 ~~~a~~~~~-------------------------~~~~~--~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~---~~~~~l 105 (124)
T TIGR02469 56 LRLIERNAR-------------------------RFGVS--NIVIVEGDAPEALEDSLPEPDRVFIGGSGG---LLQEIL 105 (124)
T ss_pred HHHHHHHHH-------------------------HhCCC--ceEEEeccccccChhhcCCCCEEEECCcch---hHHHHH
Confidence 999998877 33333 56777777654 222245899999866443 346899
Q ss_pred HHHHHhccCCcEEEEEe
Q psy1420 189 SEAYRVLKPGGRFLCLE 205 (241)
Q Consensus 189 ~~~~~~LkpgG~l~i~~ 205 (241)
+.+++.|||||++++.-
T Consensus 106 ~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 106 EAIWRRLRPGGRIVLNA 122 (124)
T ss_pred HHHHHHcCCCCEEEEEe
Confidence 99999999999998753
No 62
>KOG2361|consensus
Probab=99.36 E-value=5.7e-12 Score=108.22 Aligned_cols=127 Identities=20% Similarity=0.349 Sum_probs=98.0
Q ss_pred CeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCCcc
Q psy1420 45 TKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIES 124 (241)
Q Consensus 45 ~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~ 124 (241)
.+|||+|||.|++. .| +++..+. ....+++.|.||.+++..+++..-
T Consensus 73 ~~ilEvGCGvGNtv----------------fP----ll~~~~n--------~~l~v~acDfsp~Ai~~vk~~~~~----- 119 (264)
T KOG2361|consen 73 ETILEVGCGVGNTV----------------FP----LLKTSPN--------NRLKVYACDFSPRAIELVKKSSGY----- 119 (264)
T ss_pred hhheeeccCCCccc----------------ch----hhhcCCC--------CCeEEEEcCCChHHHHHHHhcccc-----
Confidence 38999999999988 56 5555543 357899999999999998876541
Q ss_pred ccccccceecceeeeeeccccCCCCCCeeEEecccCC----CCCCCCceeEEeeeehhhccc--cHHHHHHHHHHhccCC
Q psy1420 125 DSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEE----LPIESDSYSAYTIAFGIRNVT--RIDKALSEAYRVLKPG 198 (241)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~----~~~~~~~~D~V~~~~~l~~~~--~~~~~l~~~~~~Lkpg 198 (241)
...++.....|+.. .|.+.+++|.|++.++|..++ ....++.+++++||||
T Consensus 120 -----------------------~e~~~~afv~Dlt~~~~~~~~~~~svD~it~IFvLSAi~pek~~~a~~nl~~llKPG 176 (264)
T KOG2361|consen 120 -----------------------DESRVEAFVWDLTSPSLKEPPEEGSVDIITLIFVLSAIHPEKMQSVIKNLRTLLKPG 176 (264)
T ss_pred -----------------------chhhhcccceeccchhccCCCCcCccceEEEEEEEeccChHHHHHHHHHHHHHhCCC
Confidence 00133333444433 245678999999999998765 4579999999999999
Q ss_pred cEEEEEecCH--------------------------------HHHHHHHHHCCCceEEEEE
Q psy1420 199 GRFLCLEFSH--------------------------------EEFKSMIESAGFQYVTYEN 227 (241)
Q Consensus 199 G~l~i~~~~~--------------------------------~~~~~~l~~~Gf~~~~~~~ 227 (241)
|.+++.+++. +++.+++.++||..++...
T Consensus 177 G~llfrDYg~~DlaqlRF~~~~~i~~nfYVRgDGT~~YfF~~eeL~~~f~~agf~~~~~~~ 237 (264)
T KOG2361|consen 177 GSLLFRDYGRYDLAQLRFKKGQCISENFYVRGDGTRAYFFTEEELDELFTKAGFEEVQLEV 237 (264)
T ss_pred cEEEEeecccchHHHHhccCCceeecceEEccCCceeeeccHHHHHHHHHhcccchhcccc
Confidence 9999988666 8999999999998776654
No 63
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.36 E-value=2.7e-11 Score=101.67 Aligned_cols=124 Identities=16% Similarity=0.229 Sum_probs=93.0
Q ss_pred hcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHH
Q psy1420 38 RLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANA 117 (241)
Q Consensus 38 ~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~ 117 (241)
.+...+-.+++|+|||.|.++ ..+++ ....++++|+++..++.+++++
T Consensus 38 aLp~~ry~~alEvGCs~G~lT-------------~~LA~-------------------rCd~LlavDis~~Al~~Ar~Rl 85 (201)
T PF05401_consen 38 ALPRRRYRRALEVGCSIGVLT-------------ERLAP-------------------RCDRLLAVDISPRALARARERL 85 (201)
T ss_dssp HHTTSSEEEEEEE--TTSHHH-------------HHHGG-------------------GEEEEEEEES-HHHHHHHHHHT
T ss_pred hcCccccceeEecCCCccHHH-------------HHHHH-------------------hhCceEEEeCCHHHHHHHHHhc
Confidence 456667789999999999999 66666 4568999999999999999998
Q ss_pred hcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhcccc---HHHHHHHHHHh
Q psy1420 118 EELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTR---IDKALSEAYRV 194 (241)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~---~~~~l~~~~~~ 194 (241)
. +. +++++.+.++... .+.++||+|+++.+++++.+ ...++..+...
T Consensus 86 ~---------------------------~~--~~V~~~~~dvp~~-~P~~~FDLIV~SEVlYYL~~~~~L~~~l~~l~~~ 135 (201)
T PF05401_consen 86 A---------------------------GL--PHVEWIQADVPEF-WPEGRFDLIVLSEVLYYLDDAEDLRAALDRLVAA 135 (201)
T ss_dssp T---------------------------T---SSEEEEES-TTT----SS-EEEEEEES-GGGSSSHHHHHHHHHHHHHT
T ss_pred C---------------------------CC--CCeEEEECcCCCC-CCCCCeeEEEEehHhHcCCCHHHHHHHHHHHHHH
Confidence 7 22 3799999998765 45789999999999999865 45789999999
Q ss_pred ccCCcEEEEEecCH------------HHHHHHHHHCCCceEE
Q psy1420 195 LKPGGRFLCLEFSH------------EEFKSMIESAGFQYVT 224 (241)
Q Consensus 195 LkpgG~l~i~~~~~------------~~~~~~l~~~Gf~~~~ 224 (241)
|+|||.|++..+.. +.+.+++++. |..++
T Consensus 136 L~pgG~LV~g~~rd~~c~~wgh~~ga~tv~~~~~~~-~~~~~ 176 (201)
T PF05401_consen 136 LAPGGHLVFGHARDANCRRWGHAAGAETVLEMLQEH-LTEVE 176 (201)
T ss_dssp EEEEEEEEEEEE-HHHHHHTT-S--HHHHHHHHHHH-SEEEE
T ss_pred hCCCCEEEEEEecCCcccccCcccchHHHHHHHHHH-hhhee
Confidence 99999999987655 6677777766 44333
No 64
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.36 E-value=6.3e-12 Score=113.98 Aligned_cols=136 Identities=20% Similarity=0.159 Sum_probs=105.7
Q ss_pred HHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHH
Q psy1420 32 KDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLR 111 (241)
Q Consensus 32 ~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~ 111 (241)
...+......+++.+|||+|||+|..+ ..... ....++++|+++.|++
T Consensus 171 a~~~~~l~~~~~g~~vLDp~cGtG~~l-------------ieaa~-------------------~~~~v~g~Di~~~~~~ 218 (329)
T TIGR01177 171 ARAMVNLARVTEGDRVLDPFCGTGGFL-------------IEAGL-------------------MGAKVIGCDIDWKMVA 218 (329)
T ss_pred HHHHHHHhCCCCcCEEEECCCCCCHHH-------------HHHHH-------------------hCCeEEEEcCCHHHHH
Confidence 445555666788889999999999877 33322 2457999999999999
Q ss_pred HHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeee--hhhc------c-c
Q psy1420 112 FLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAF--GIRN------V-T 182 (241)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~--~l~~------~-~ 182 (241)
.++.++. ..++. ++.+..+|+..+|.+.++||+|+++- +... . .
T Consensus 219 ~a~~nl~-------------------------~~g~~--~i~~~~~D~~~l~~~~~~~D~Iv~dPPyg~~~~~~~~~~~~ 271 (329)
T TIGR01177 219 GARINLE-------------------------HYGIE--DFFVKRGDATKLPLSSESVDAIATDPPYGRSTTAAGDGLES 271 (329)
T ss_pred HHHHHHH-------------------------HhCCC--CCeEEecchhcCCcccCCCCEEEECCCCcCcccccCCchHH
Confidence 9998887 55554 37888999999887778999999862 2211 1 1
Q ss_pred cHHHHHHHHHHhccCCcEEEEEecCHHHHHHHHHHCCCceEEEEE
Q psy1420 183 RIDKALSEAYRVLKPGGRFLCLEFSHEEFKSMIESAGFQYVTYEN 227 (241)
Q Consensus 183 ~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~l~~~Gf~~~~~~~ 227 (241)
-..++++++.++|||||++++...+..++.+.++++|| ++....
T Consensus 272 l~~~~l~~~~r~Lk~gG~lv~~~~~~~~~~~~~~~~g~-i~~~~~ 315 (329)
T TIGR01177 272 LYERSLEEFHEVLKSEGWIVYAVPTRIDLESLAEDAFR-VVKRFE 315 (329)
T ss_pred HHHHHHHHHHHHccCCcEEEEEEcCCCCHHHHHhhcCc-chheee
Confidence 25789999999999999999888777889999999999 665544
No 65
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.35 E-value=8.7e-12 Score=105.79 Aligned_cols=114 Identities=16% Similarity=0.181 Sum_probs=86.1
Q ss_pred HHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhH
Q psy1420 31 WKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRL 110 (241)
Q Consensus 31 ~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~ 110 (241)
....+++.+..+++.+|||+|||+|..+ ..+.. .+. ...+++++|+++.++
T Consensus 60 ~~~~~~~~l~~~~~~~VLDiG~GsG~~~-------------~~la~----~~~------------~~g~V~~iD~~~~~~ 110 (205)
T PRK13944 60 MVAMMCELIEPRPGMKILEVGTGSGYQA-------------AVCAE----AIE------------RRGKVYTVEIVKELA 110 (205)
T ss_pred HHHHHHHhcCCCCCCEEEEECcCccHHH-------------HHHHH----hcC------------CCCEEEEEeCCHHHH
Confidence 3566777777788899999999999988 33332 110 245799999999999
Q ss_pred HHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHHH
Q psy1420 111 RFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSE 190 (241)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~ 190 (241)
+.+++++. +.+.. .++++..+|+........+||+|++..++.+++ ++
T Consensus 111 ~~a~~~l~-------------------------~~~~~-~~v~~~~~d~~~~~~~~~~fD~Ii~~~~~~~~~------~~ 158 (205)
T PRK13944 111 IYAAQNIE-------------------------RLGYW-GVVEVYHGDGKRGLEKHAPFDAIIVTAAASTIP------SA 158 (205)
T ss_pred HHHHHHHH-------------------------HcCCC-CcEEEEECCcccCCccCCCccEEEEccCcchhh------HH
Confidence 99998887 44443 358889999876543456899999988876554 46
Q ss_pred HHHhccCCcEEEEEe
Q psy1420 191 AYRVLKPGGRFLCLE 205 (241)
Q Consensus 191 ~~~~LkpgG~l~i~~ 205 (241)
+.+.|+|||+|++..
T Consensus 159 l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 159 LVRQLKDGGVLVIPV 173 (205)
T ss_pred HHHhcCcCcEEEEEE
Confidence 889999999998743
No 66
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.35 E-value=8.5e-13 Score=99.21 Aligned_cols=98 Identities=19% Similarity=0.336 Sum_probs=73.6
Q ss_pred EEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCCcccc
Q psy1420 47 LLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIESDS 126 (241)
Q Consensus 47 vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~ 126 (241)
|||+|||+|..+ ..+.+ .+.. .+...++++|+++.+++.+++...
T Consensus 1 ILDlgcG~G~~~-------------~~l~~----~~~~----------~~~~~~~gvD~s~~~l~~~~~~~~-------- 45 (101)
T PF13649_consen 1 ILDLGCGTGRVT-------------RALAR----RFDA----------GPSSRVIGVDISPEMLELAKKRFS-------- 45 (101)
T ss_dssp -EEET-TTSHHH-------------HHHHH----HS---------------SEEEEEES-HHHHHHHHHHSH--------
T ss_pred CEEeecCCcHHH-------------HHHHH----Hhhh----------cccceEEEEECCHHHHHHHHHhch--------
Confidence 799999999988 54444 1100 023789999999999999998876
Q ss_pred ccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeeh-hhcccc--HHHHHHHHHHhccCCc
Q psy1420 127 YSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFG-IRNVTR--IDKALSEAYRVLKPGG 199 (241)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~-l~~~~~--~~~~l~~~~~~LkpgG 199 (241)
..+. +++++++|+.+++...++||+|++... ++++++ ..++++++.++|+|||
T Consensus 46 -----------------~~~~---~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 46 -----------------EDGP---KVRFVQADARDLPFSDGKFDLVVCSGLSLHHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp -----------------HTTT---TSEEEESCTTCHHHHSSSEEEEEE-TTGGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred -----------------hcCC---ceEEEECCHhHCcccCCCeeEEEEcCCccCCCCHHHHHHHHHHHHHHhCCCC
Confidence 3232 588999999998877789999999544 888764 5799999999999998
No 67
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.34 E-value=1.6e-11 Score=108.31 Aligned_cols=101 Identities=20% Similarity=0.275 Sum_probs=76.5
Q ss_pred CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCC
Q psy1420 42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP 121 (241)
Q Consensus 42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~ 121 (241)
.+..+|||+|||+|.++ ..+.. .+.. .....++|+|+|+.+++.+.++..
T Consensus 84 ~~~~~vLDiGcG~G~~~-------------~~l~~----~~~~----------~~~~~v~giD~s~~~l~~A~~~~~--- 133 (272)
T PRK11088 84 EKATALLDIGCGEGYYT-------------HALAD----ALPE----------ITTMQLFGLDISKVAIKYAAKRYP--- 133 (272)
T ss_pred CCCCeEEEECCcCCHHH-------------HHHHH----hccc----------ccCCeEEEECCCHHHHHHHHHhCC---
Confidence 35568999999999988 44333 1100 012368999999999999876532
Q ss_pred CccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHHHHHHhccCCcEE
Q psy1420 122 IESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRF 201 (241)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l 201 (241)
++.+..+|+..+|+++++||+|++.+.- ..++++.|+|||||++
T Consensus 134 -----------------------------~~~~~~~d~~~lp~~~~sfD~I~~~~~~-------~~~~e~~rvLkpgG~l 177 (272)
T PRK11088 134 -----------------------------QVTFCVASSHRLPFADQSLDAIIRIYAP-------CKAEELARVVKPGGIV 177 (272)
T ss_pred -----------------------------CCeEEEeecccCCCcCCceeEEEEecCC-------CCHHHHHhhccCCCEE
Confidence 5778899999999888899999986541 2467899999999999
Q ss_pred EEEecCH
Q psy1420 202 LCLEFSH 208 (241)
Q Consensus 202 ~i~~~~~ 208 (241)
++.....
T Consensus 178 i~~~p~~ 184 (272)
T PRK11088 178 ITVTPGP 184 (272)
T ss_pred EEEeCCC
Confidence 9987655
No 68
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.32 E-value=2.7e-11 Score=101.93 Aligned_cols=127 Identities=18% Similarity=0.232 Sum_probs=92.0
Q ss_pred hhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHH
Q psy1420 37 DRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEAN 116 (241)
Q Consensus 37 ~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~ 116 (241)
+.+...+++++||+|||.|.++ .-++. .+..|+++|.|+..++.+.+.
T Consensus 24 ~a~~~~~~g~~LDlgcG~GRNa-------------lyLA~-------------------~G~~VtAvD~s~~al~~l~~~ 71 (192)
T PF03848_consen 24 EAVPLLKPGKALDLGCGEGRNA-------------LYLAS-------------------QGFDVTAVDISPVALEKLQRL 71 (192)
T ss_dssp HHCTTS-SSEEEEES-TTSHHH-------------HHHHH-------------------TT-EEEEEESSHHHHHHHHHH
T ss_pred HHHhhcCCCcEEEcCCCCcHHH-------------HHHHH-------------------CCCeEEEEECCHHHHHHHHHH
Confidence 3344456779999999999999 33333 477899999999999999888
Q ss_pred HhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhcccc--HHHHHHHHHHh
Q psy1420 117 AEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTR--IDKALSEAYRV 194 (241)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~--~~~~l~~~~~~ 194 (241)
+. +.+++ ++....|+.+..++ +.||+|++..++++++. ..+.++.+...
T Consensus 72 a~-------------------------~~~l~---i~~~~~Dl~~~~~~-~~yD~I~st~v~~fL~~~~~~~i~~~m~~~ 122 (192)
T PF03848_consen 72 AE-------------------------EEGLD---IRTRVADLNDFDFP-EEYDFIVSTVVFMFLQRELRPQIIENMKAA 122 (192)
T ss_dssp HH-------------------------HTT-T---EEEEE-BGCCBS-T-TTEEEEEEESSGGGS-GGGHHHHHHHHHHT
T ss_pred Hh-------------------------hcCce---eEEEEecchhcccc-CCcCEEEEEEEeccCCHHHHHHHHHHHHhh
Confidence 77 55655 88889998887764 68999999888887653 46899999999
Q ss_pred ccCCcEEEEEecCH----------------HHHHHHHHHCCCceEEEE
Q psy1420 195 LKPGGRFLCLEFSH----------------EEFKSMIESAGFQYVTYE 226 (241)
Q Consensus 195 LkpgG~l~i~~~~~----------------~~~~~~l~~~Gf~~~~~~ 226 (241)
++|||++++..+.. +++.+.+. |++++++.
T Consensus 123 ~~pGG~~li~~~~~~~d~p~~~~~~f~~~~~EL~~~y~--dW~il~y~ 168 (192)
T PF03848_consen 123 TKPGGYNLIVTFMETPDYPCPSPFPFLLKPGELREYYA--DWEILKYN 168 (192)
T ss_dssp EEEEEEEEEEEEB--SSS--SS--S--B-TTHHHHHTT--TSEEEEEE
T ss_pred cCCcEEEEEEEecccCCCCCCCCCCcccCHHHHHHHhC--CCeEEEEE
Confidence 99999988754311 66666665 46666554
No 69
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.30 E-value=2e-11 Score=104.17 Aligned_cols=113 Identities=14% Similarity=0.116 Sum_probs=85.7
Q ss_pred HHHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHh
Q psy1420 30 LWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPR 109 (241)
Q Consensus 30 ~~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~ 109 (241)
.....+++.+...++.+|||+|||+|..+ ..+...++ ...+++++|+++.+
T Consensus 63 ~~~~~~~~~l~~~~g~~VLdIG~GsG~~t-------------~~la~~~~----------------~~~~V~~vE~~~~~ 113 (212)
T PRK13942 63 HMVAIMCELLDLKEGMKVLEIGTGSGYHA-------------AVVAEIVG----------------KSGKVVTIERIPEL 113 (212)
T ss_pred HHHHHHHHHcCCCCcCEEEEECCcccHHH-------------HHHHHhcC----------------CCCEEEEEeCCHHH
Confidence 34566777778889999999999999988 33332111 24689999999999
Q ss_pred HHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHH
Q psy1420 110 LRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALS 189 (241)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~ 189 (241)
++.+++++. +.+.. ++++..+|......+..+||+|++.....+++ .
T Consensus 114 ~~~a~~~l~-------------------------~~g~~--~v~~~~gd~~~~~~~~~~fD~I~~~~~~~~~~------~ 160 (212)
T PRK13942 114 AEKAKKTLK-------------------------KLGYD--NVEVIVGDGTLGYEENAPYDRIYVTAAGPDIP------K 160 (212)
T ss_pred HHHHHHHHH-------------------------HcCCC--CeEEEECCcccCCCcCCCcCEEEECCCcccch------H
Confidence 999999987 44443 68999999876554567899999877654432 3
Q ss_pred HHHHhccCCcEEEEE
Q psy1420 190 EAYRVLKPGGRFLCL 204 (241)
Q Consensus 190 ~~~~~LkpgG~l~i~ 204 (241)
.+.+.|||||++++.
T Consensus 161 ~l~~~LkpgG~lvi~ 175 (212)
T PRK13942 161 PLIEQLKDGGIMVIP 175 (212)
T ss_pred HHHHhhCCCcEEEEE
Confidence 567789999998875
No 70
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.30 E-value=2.6e-11 Score=103.07 Aligned_cols=100 Identities=11% Similarity=0.145 Sum_probs=77.4
Q ss_pred CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCC
Q psy1420 42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP 121 (241)
Q Consensus 42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~ 121 (241)
.++.+|||+|||+|..+ ..+.. .+ ....++|+|+|+.+++.++++..
T Consensus 42 ~~~~~VLDiGCG~G~~~-------------~~L~~----~~-------------~~~~v~giDiS~~~l~~A~~~~~--- 88 (204)
T TIGR03587 42 PKIASILELGANIGMNL-------------AALKR----LL-------------PFKHIYGVEINEYAVEKAKAYLP--- 88 (204)
T ss_pred CCCCcEEEEecCCCHHH-------------HHHHH----hC-------------CCCeEEEEECCHHHHHHHHhhCC---
Confidence 35668999999999988 33332 00 24679999999999999986543
Q ss_pred CccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccc--cHHHHHHHHHHhccCCc
Q psy1420 122 IESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVT--RIDKALSEAYRVLKPGG 199 (241)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~--~~~~~l~~~~~~LkpgG 199 (241)
++.+..+|+.+ |.++++||+|++..+++|++ +..++++++++++ ++
T Consensus 89 -----------------------------~~~~~~~d~~~-~~~~~sfD~V~~~~vL~hl~p~~~~~~l~el~r~~--~~ 136 (204)
T TIGR03587 89 -----------------------------NINIIQGSLFD-PFKDNFFDLVLTKGVLIHINPDNLPTAYRELYRCS--NR 136 (204)
T ss_pred -----------------------------CCcEEEeeccC-CCCCCCEEEEEECChhhhCCHHHHHHHHHHHHhhc--Cc
Confidence 35677888777 77778999999999999885 3578899999987 56
Q ss_pred EEEEEec
Q psy1420 200 RFLCLEF 206 (241)
Q Consensus 200 ~l~i~~~ 206 (241)
++++.++
T Consensus 137 ~v~i~e~ 143 (204)
T TIGR03587 137 YILIAEY 143 (204)
T ss_pred EEEEEEe
Confidence 7777664
No 71
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.29 E-value=2.3e-11 Score=102.25 Aligned_cols=125 Identities=19% Similarity=0.210 Sum_probs=92.1
Q ss_pred CCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCC
Q psy1420 43 HDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPI 122 (241)
Q Consensus 43 ~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~ 122 (241)
+..++||+|||+|..+ ..++. . .+...++++|+++.+++.+.+++.
T Consensus 16 ~~~~ilDiGcG~G~~~-------------~~la~-------~----------~p~~~v~gvD~~~~~l~~a~~~~~---- 61 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFL-------------IDMAK-------Q----------NPDKNFLGIEIHTPIVLAANNKAN---- 61 (194)
T ss_pred CCceEEEeCCCccHHH-------------HHHHH-------h----------CCCCCEEEEEeeHHHHHHHHHHHH----
Confidence 4558999999999988 33332 1 135689999999999999998877
Q ss_pred ccccccccceecceeeeeeccccCCCCCCeeEEecccCCCC---CCCCceeEEeeeehhhcccc--------HHHHHHHH
Q psy1420 123 ESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELP---IESDSYSAYTIAFGIRNVTR--------IDKALSEA 191 (241)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~~D~V~~~~~l~~~~~--------~~~~l~~~ 191 (241)
+.++. +++++++|+..++ .+.+++|.|++++.-.+... ...+++++
T Consensus 62 ---------------------~~~l~--ni~~i~~d~~~~~~~~~~~~~~d~v~~~~pdpw~k~~h~~~r~~~~~~l~~~ 118 (194)
T TIGR00091 62 ---------------------KLGLK--NLHVLCGDANELLDKFFPDGSLSKVFLNFPDPWPKKRHNKRRITQPHFLKEY 118 (194)
T ss_pred ---------------------HhCCC--CEEEEccCHHHHHHhhCCCCceeEEEEECCCcCCCCCccccccCCHHHHHHH
Confidence 55554 7899999987643 34458999998765433221 15789999
Q ss_pred HHhccCCcEEEEEecCH---HHHHHHHHHCC-CceEE
Q psy1420 192 YRVLKPGGRFLCLEFSH---EEFKSMIESAG-FQYVT 224 (241)
Q Consensus 192 ~~~LkpgG~l~i~~~~~---~~~~~~l~~~G-f~~~~ 224 (241)
.++|||||.+++.+-.. +++.+.+.+.+ |....
T Consensus 119 ~r~LkpgG~l~~~td~~~~~~~~~~~~~~~~~f~~~~ 155 (194)
T TIGR00091 119 ANVLKKGGVIHFKTDNEPLFEDMLKVLSENDLFENTS 155 (194)
T ss_pred HHHhCCCCEEEEEeCCHHHHHHHHHHHHhCCCeEecc
Confidence 99999999999877665 55566666666 76543
No 72
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.29 E-value=6.7e-11 Score=103.31 Aligned_cols=120 Identities=19% Similarity=0.179 Sum_probs=87.4
Q ss_pred CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCC
Q psy1420 42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP 121 (241)
Q Consensus 42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~ 121 (241)
.++.+|||+|||+|..+ ..+.. .....++++|+++.+++.+++++.
T Consensus 118 ~~~~~VLDiGcGsG~l~-------------i~~~~------------------~g~~~v~giDis~~~l~~A~~n~~--- 163 (250)
T PRK00517 118 LPGKTVLDVGCGSGILA-------------IAAAK------------------LGAKKVLAVDIDPQAVEAARENAE--- 163 (250)
T ss_pred CCCCEEEEeCCcHHHHH-------------HHHHH------------------cCCCeEEEEECCHHHHHHHHHHHH---
Confidence 56789999999999877 32222 022359999999999999999887
Q ss_pred CccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHHHHHHhccCCcEE
Q psy1420 122 IESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRF 201 (241)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l 201 (241)
..++. ..+.+..++ .+||+|+++... ......+.++.++|||||++
T Consensus 164 ----------------------~~~~~-~~~~~~~~~--------~~fD~Vvani~~---~~~~~l~~~~~~~LkpgG~l 209 (250)
T PRK00517 164 ----------------------LNGVE-LNVYLPQGD--------LKADVIVANILA---NPLLELAPDLARLLKPGGRL 209 (250)
T ss_pred ----------------------HcCCC-ceEEEccCC--------CCcCEEEEcCcH---HHHHHHHHHHHHhcCCCcEE
Confidence 43332 223332221 269999986432 23457889999999999999
Q ss_pred EEEecCH---HHHHHHHHHCCCceEEEEEec
Q psy1420 202 LCLEFSH---EEFKSMIESAGFQYVTYENLT 229 (241)
Q Consensus 202 ~i~~~~~---~~~~~~l~~~Gf~~~~~~~~~ 229 (241)
++..... +++.+.+++.||.+.+.....
T Consensus 210 ilsgi~~~~~~~v~~~l~~~Gf~~~~~~~~~ 240 (250)
T PRK00517 210 ILSGILEEQADEVLEAYEEAGFTLDEVLERG 240 (250)
T ss_pred EEEECcHhhHHHHHHHHHHCCCEEEEEEEeC
Confidence 9986655 788889999999988776653
No 73
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.27 E-value=3.4e-11 Score=99.23 Aligned_cols=125 Identities=18% Similarity=0.311 Sum_probs=88.2
Q ss_pred HHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHH
Q psy1420 34 IFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFL 113 (241)
Q Consensus 34 ~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~ 113 (241)
.+++.+...++.+|||+|||+|..+ ..++. . ....+++++|+++.+++.+
T Consensus 22 lL~~~l~~~~~~~vLDlG~G~G~i~-------------~~la~--------~---------~~~~~v~~vDi~~~a~~~a 71 (170)
T PF05175_consen 22 LLLDNLPKHKGGRVLDLGCGSGVIS-------------LALAK--------R---------GPDAKVTAVDINPDALELA 71 (170)
T ss_dssp HHHHHHHHHTTCEEEEETSTTSHHH-------------HHHHH--------T---------STCEEEEEEESBHHHHHHH
T ss_pred HHHHHHhhccCCeEEEecCChHHHH-------------HHHHH--------h---------CCCCEEEEEcCCHHHHHHH
Confidence 3444444446779999999999888 33322 1 0244699999999999999
Q ss_pred HHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhcccc-----HHHHH
Q psy1420 114 EANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTR-----IDKAL 188 (241)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~-----~~~~l 188 (241)
++++. ..++. ++++...|..+.. +.++||+|+++--++...+ ..+++
T Consensus 72 ~~n~~-------------------------~n~~~--~v~~~~~d~~~~~-~~~~fD~Iv~NPP~~~~~~~~~~~~~~~i 123 (170)
T PF05175_consen 72 KRNAE-------------------------RNGLE--NVEVVQSDLFEAL-PDGKFDLIVSNPPFHAGGDDGLDLLRDFI 123 (170)
T ss_dssp HHHHH-------------------------HTTCT--TEEEEESSTTTTC-CTTCEEEEEE---SBTTSHCHHHHHHHHH
T ss_pred HHHHH-------------------------hcCcc--ccccccccccccc-cccceeEEEEccchhcccccchhhHHHHH
Confidence 99998 56655 2888888876642 3679999999876654433 57889
Q ss_pred HHHHHhccCCcEEEEEecCHHHHHHHHH
Q psy1420 189 SEAYRVLKPGGRFLCLEFSHEEFKSMIE 216 (241)
Q Consensus 189 ~~~~~~LkpgG~l~i~~~~~~~~~~~l~ 216 (241)
+.+.++|||||.+++........+..++
T Consensus 124 ~~a~~~Lk~~G~l~lv~~~~~~~~~~l~ 151 (170)
T PF05175_consen 124 EQARRYLKPGGRLFLVINSHLGYERLLK 151 (170)
T ss_dssp HHHHHHEEEEEEEEEEEETTSCHHHHHH
T ss_pred HHHHHhccCCCEEEEEeecCCChHHHHH
Confidence 9999999999999776555533444443
No 74
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.26 E-value=1.3e-10 Score=100.30 Aligned_cols=136 Identities=21% Similarity=0.318 Sum_probs=96.5
Q ss_pred HHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHH
Q psy1420 33 DIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRF 112 (241)
Q Consensus 33 ~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~ 112 (241)
+.+++.+. ..+.+|||+|||+|..+ ..++. .. ....++++|+++.+++.
T Consensus 78 ~~~l~~~~-~~~~~ilDig~G~G~~~-------------~~l~~----~~-------------~~~~v~~iD~~~~~~~~ 126 (251)
T TIGR03534 78 EAALERLK-KGPLRVLDLGTGSGAIA-------------LALAK----ER-------------PDARVTAVDISPEALAV 126 (251)
T ss_pred HHHHHhcc-cCCCeEEEEeCcHhHHH-------------HHHHH----HC-------------CCCEEEEEECCHHHHHH
Confidence 34444443 34458999999999988 33333 10 24579999999999999
Q ss_pred HHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhc------c-----
Q psy1420 113 LEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRN------V----- 181 (241)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~------~----- 181 (241)
+++++. ..++. ++.+.++|+.. +.+.++||+|+++-.... +
T Consensus 127 a~~~~~-------------------------~~~~~--~~~~~~~d~~~-~~~~~~fD~Vi~npPy~~~~~~~~~~~~~~ 178 (251)
T TIGR03534 127 ARKNAA-------------------------RLGLD--NVTFLQSDWFE-PLPGGKFDLIVSNPPYIPEADIHLLDPEVR 178 (251)
T ss_pred HHHHHH-------------------------HcCCC--eEEEEECchhc-cCcCCceeEEEECCCCCchhhhhhcChhhh
Confidence 998887 44443 58888988866 345678999998532211 1
Q ss_pred ---------------ccHHHHHHHHHHhccCCcEEEEEecC--HHHHHHHHHHCCCceEEEEE
Q psy1420 182 ---------------TRIDKALSEAYRVLKPGGRFLCLEFS--HEEFKSMIESAGFQYVTYEN 227 (241)
Q Consensus 182 ---------------~~~~~~l~~~~~~LkpgG~l~i~~~~--~~~~~~~l~~~Gf~~~~~~~ 227 (241)
.....++..+.++|+|||.+++.... .+++.++++++||..++...
T Consensus 179 ~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~~~~~~~~~~l~~~gf~~v~~~~ 241 (251)
T TIGR03534 179 FHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGYDQGEAVRALFEAAGFADVETRK 241 (251)
T ss_pred hcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECccHHHHHHHHHHhCCCCceEEEe
Confidence 11246789999999999999875422 27889999999998776654
No 75
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.26 E-value=5e-11 Score=101.68 Aligned_cols=112 Identities=12% Similarity=0.092 Sum_probs=84.5
Q ss_pred HHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhH
Q psy1420 31 WKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRL 110 (241)
Q Consensus 31 ~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~ 110 (241)
....+++.+..+++.+|||+|||+|..+ ..++. ... ...+++++|+++.++
T Consensus 65 ~~~~~~~~l~~~~~~~VLDiG~GsG~~a-------------~~la~----~~~------------~~g~V~~vD~~~~~~ 115 (215)
T TIGR00080 65 MVAMMTELLELKPGMKVLEIGTGSGYQA-------------AVLAE----IVG------------RDGLVVSIERIPELA 115 (215)
T ss_pred HHHHHHHHhCCCCcCEEEEECCCccHHH-------------HHHHH----HhC------------CCCEEEEEeCCHHHH
Confidence 3456777778889999999999999998 33333 100 234699999999999
Q ss_pred HHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHHH
Q psy1420 111 RFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSE 190 (241)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~ 190 (241)
+.+++++. +.++. +++++.+|.........+||+|++.....++ ...
T Consensus 116 ~~A~~~~~-------------------------~~g~~--~v~~~~~d~~~~~~~~~~fD~Ii~~~~~~~~------~~~ 162 (215)
T TIGR00080 116 EKAERRLR-------------------------KLGLD--NVIVIVGDGTQGWEPLAPYDRIYVTAAGPKI------PEA 162 (215)
T ss_pred HHHHHHHH-------------------------HCCCC--CeEEEECCcccCCcccCCCCEEEEcCCcccc------cHH
Confidence 99999988 55554 6889999987654344689999987655443 345
Q ss_pred HHHhccCCcEEEEE
Q psy1420 191 AYRVLKPGGRFLCL 204 (241)
Q Consensus 191 ~~~~LkpgG~l~i~ 204 (241)
+.+.|+|||++++.
T Consensus 163 ~~~~L~~gG~lv~~ 176 (215)
T TIGR00080 163 LIDQLKEGGILVMP 176 (215)
T ss_pred HHHhcCcCcEEEEE
Confidence 78899999999875
No 76
>PRK14967 putative methyltransferase; Provisional
Probab=99.26 E-value=1.6e-10 Score=99.06 Aligned_cols=131 Identities=17% Similarity=0.189 Sum_probs=92.2
Q ss_pred hcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHH
Q psy1420 38 RLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANA 117 (241)
Q Consensus 38 ~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~ 117 (241)
.....++.+|||+|||+|.++ ..+.. ....+++++|+++.+++.+++++
T Consensus 31 ~~~~~~~~~vLDlGcG~G~~~-------------~~la~------------------~~~~~v~~vD~s~~~l~~a~~n~ 79 (223)
T PRK14967 31 AEGLGPGRRVLDLCTGSGALA-------------VAAAA------------------AGAGSVTAVDISRRAVRSARLNA 79 (223)
T ss_pred hcccCCCCeEEEecCCHHHHH-------------HHHHH------------------cCCCeEEEEECCHHHHHHHHHHH
Confidence 334567789999999999987 33332 01247999999999999999887
Q ss_pred hcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhcc----------------
Q psy1420 118 EELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNV---------------- 181 (241)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~---------------- 181 (241)
. ..+. ++.++..|+... .+.++||+|+++-.....
T Consensus 80 ~-------------------------~~~~---~~~~~~~d~~~~-~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~ 130 (223)
T PRK14967 80 L-------------------------LAGV---DVDVRRGDWARA-VEFRPFDVVVSNPPYVPAPPDAPPSRGPARAWDA 130 (223)
T ss_pred H-------------------------HhCC---eeEEEECchhhh-ccCCCeeEEEECCCCCCCCcccccccChhHhhhC
Confidence 6 3332 366777777653 345689999986322110
Q ss_pred -----ccHHHHHHHHHHhccCCcEEEEEec---CHHHHHHHHHHCCCceEEEEEe
Q psy1420 182 -----TRIDKALSEAYRVLKPGGRFLCLEF---SHEEFKSMIESAGFQYVTYENL 228 (241)
Q Consensus 182 -----~~~~~~l~~~~~~LkpgG~l~i~~~---~~~~~~~~l~~~Gf~~~~~~~~ 228 (241)
.....+++.+.++|||||++++... ...++.+.+++.||........
T Consensus 131 ~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~ 185 (223)
T PRK14967 131 GPDGRAVLDRLCDAAPALLAPGGSLLLVQSELSGVERTLTRLSEAGLDAEVVASQ 185 (223)
T ss_pred CCcHHHHHHHHHHHHHHhcCCCcEEEEEEecccCHHHHHHHHHHCCCCeEEEEee
Confidence 0145688899999999999988533 3367888888899876665543
No 77
>PLN03075 nicotianamine synthase; Provisional
Probab=99.26 E-value=1e-10 Score=104.44 Aligned_cols=145 Identities=15% Similarity=0.159 Sum_probs=100.6
Q ss_pred CCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcC
Q psy1420 41 PTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEEL 120 (241)
Q Consensus 41 ~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~ 120 (241)
..++.+|+|+|||.|..+.++ ++ ++. .+..+++++|.++.+++.|++.+..
T Consensus 121 ~~~p~~VldIGcGpgpltaii------------la-------a~~---------~p~~~~~giD~d~~ai~~Ar~~~~~- 171 (296)
T PLN03075 121 NGVPTKVAFVGSGPLPLTSIV------------LA-------KHH---------LPTTSFHNFDIDPSANDVARRLVSS- 171 (296)
T ss_pred cCCCCEEEEECCCCcHHHHHH------------HH-------Hhc---------CCCCEEEEEeCCHHHHHHHHHHhhh-
Confidence 346779999999988665111 01 011 0456899999999999999998851
Q ss_pred CCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhcc--ccHHHHHHHHHHhccCC
Q psy1420 121 PIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNV--TRIDKALSEAYRVLKPG 198 (241)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~--~~~~~~l~~~~~~Lkpg 198 (241)
+.++. ++++|..+|+.+.+...+.||+|++. +++.+ +++.++++.+.+.|+||
T Consensus 172 -----------------------~~gL~-~rV~F~~~Da~~~~~~l~~FDlVF~~-ALi~~dk~~k~~vL~~l~~~LkPG 226 (296)
T PLN03075 172 -----------------------DPDLS-KRMFFHTADVMDVTESLKEYDVVFLA-ALVGMDKEEKVKVIEHLGKHMAPG 226 (296)
T ss_pred -----------------------ccCcc-CCcEEEECchhhcccccCCcCEEEEe-cccccccccHHHHHHHHHHhcCCC
Confidence 24554 57999999998864334689999999 87777 68999999999999999
Q ss_pred cEEEEEecCH------HHHHHHHHHCCCceEEEEEecCcee-EEEeeec
Q psy1420 199 GRFLCLEFSH------EEFKSMIESAGFQYVTYENLTFGVV-AIHSGFK 240 (241)
Q Consensus 199 G~l~i~~~~~------~~~~~~l~~~Gf~~~~~~~~~~~~~-~~~~~~~ 240 (241)
|.+++-.... ..+... .-.||+......=+..|+ .+++++|
T Consensus 227 G~Lvlr~~~G~r~~LYp~v~~~-~~~gf~~~~~~~P~~~v~Nsvi~~r~ 274 (296)
T PLN03075 227 ALLMLRSAHGARAFLYPVVDPC-DLRGFEVLSVFHPTDEVINSVIIARK 274 (296)
T ss_pred cEEEEecccchHhhcCCCCChh-hCCCeEEEEEECCCCCceeeEEEEEe
Confidence 9999865211 111111 122888766655544444 3444544
No 78
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.25 E-value=3.3e-11 Score=102.75 Aligned_cols=119 Identities=17% Similarity=0.199 Sum_probs=85.2
Q ss_pred CCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcC
Q psy1420 41 PTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEEL 120 (241)
Q Consensus 41 ~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~ 120 (241)
.+++.+|||+|||+|.++ ..++..++ ....++++|+++ + .
T Consensus 49 ~~~~~~VLDlG~GtG~~t-------------~~l~~~~~----------------~~~~V~aVDi~~-~--------~-- 88 (209)
T PRK11188 49 FKPGMTVVDLGAAPGGWS-------------QYAVTQIG----------------DKGRVIACDILP-M--------D-- 88 (209)
T ss_pred CCCCCEEEEEcccCCHHH-------------HHHHHHcC----------------CCceEEEEeccc-c--------c--
Confidence 367889999999999988 33333111 246899999987 1 1
Q ss_pred CCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCC--------CCCCceeEEeeeehhhccccH--------
Q psy1420 121 PIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELP--------IESDSYSAYTIAFGIRNVTRI-------- 184 (241)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--------~~~~~~D~V~~~~~l~~~~~~-------- 184 (241)
. . +++.++++|+...+ ...++||+|++....+...++
T Consensus 89 -----------------------~--~--~~v~~i~~D~~~~~~~~~i~~~~~~~~~D~V~S~~~~~~~g~~~~d~~~~~ 141 (209)
T PRK11188 89 -----------------------P--I--VGVDFLQGDFRDELVLKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAM 141 (209)
T ss_pred -----------------------C--C--CCcEEEecCCCChHHHHHHHHHhCCCCCCEEecCCCCccCCChHHHHHHHH
Confidence 0 0 24778899988753 456789999997655443221
Q ss_pred ---HHHHHHHHHhccCCcEEEEEecCHHHHHHHHHHC--CCceEEEE
Q psy1420 185 ---DKALSEAYRVLKPGGRFLCLEFSHEEFKSMIESA--GFQYVTYE 226 (241)
Q Consensus 185 ---~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~l~~~--Gf~~~~~~ 226 (241)
..+|+++.++|||||.+++..+..+.+.+++... .|..+++.
T Consensus 142 ~~~~~~L~~~~~~LkpGG~~vi~~~~~~~~~~~l~~l~~~f~~v~~~ 188 (209)
T PRK11188 142 YLVELALDMCRDVLAPGGSFVVKVFQGEGFDEYLREIRSLFTKVKVR 188 (209)
T ss_pred HHHHHHHHHHHHHcCCCCEEEEEEecCcCHHHHHHHHHhCceEEEEE
Confidence 4689999999999999999888877777777664 67655543
No 79
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.25 E-value=1e-10 Score=104.24 Aligned_cols=124 Identities=19% Similarity=0.177 Sum_probs=89.8
Q ss_pred CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCC
Q psy1420 42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP 121 (241)
Q Consensus 42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~ 121 (241)
.++.+|||+|||+|..+ ..+.. ....+++++|+++.+++.+++++.
T Consensus 158 ~~g~~VLDvGcGsG~la-------------i~aa~------------------~g~~~V~avDid~~al~~a~~n~~--- 203 (288)
T TIGR00406 158 LKDKNVIDVGCGSGILS-------------IAALK------------------LGAAKVVGIDIDPLAVESARKNAE--- 203 (288)
T ss_pred CCCCEEEEeCCChhHHH-------------HHHHH------------------cCCCeEEEEECCHHHHHHHHHHHH---
Confidence 46789999999999877 33322 023479999999999999999887
Q ss_pred CccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHHHHHHhccCCcEE
Q psy1420 122 IESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRF 201 (241)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l 201 (241)
..++. .++.+...+... ...++||+|+++.... ....++.++.++|||||++
T Consensus 204 ----------------------~n~~~-~~~~~~~~~~~~--~~~~~fDlVvan~~~~---~l~~ll~~~~~~LkpgG~l 255 (288)
T TIGR00406 204 ----------------------LNQVS-DRLQVKLIYLEQ--PIEGKADVIVANILAE---VIKELYPQFSRLVKPGGWL 255 (288)
T ss_pred ----------------------HcCCC-cceEEEeccccc--ccCCCceEEEEecCHH---HHHHHHHHHHHHcCCCcEE
Confidence 44443 345555554322 2356899999876433 3457889999999999999
Q ss_pred EEEecCH---HHHHHHHHHCCCceEEEEEe
Q psy1420 202 LCLEFSH---EEFKSMIESAGFQYVTYENL 228 (241)
Q Consensus 202 ~i~~~~~---~~~~~~l~~~Gf~~~~~~~~ 228 (241)
+++.... .++.+.+++. |.+++....
T Consensus 256 i~sgi~~~~~~~v~~~~~~~-f~~~~~~~~ 284 (288)
T TIGR00406 256 ILSGILETQAQSVCDAYEQG-FTVVEIRQR 284 (288)
T ss_pred EEEeCcHhHHHHHHHHHHcc-CceeeEecc
Confidence 9987665 6677777766 888766543
No 80
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.25 E-value=1.1e-10 Score=98.03 Aligned_cols=121 Identities=12% Similarity=0.159 Sum_probs=89.2
Q ss_pred CCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCC
Q psy1420 43 HDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPI 122 (241)
Q Consensus 43 ~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~ 122 (241)
++.+|||+|||+|.++ ..+.. .....++++|+++.+++.+...
T Consensus 13 ~~~~iLDiGcG~G~~~-------------~~l~~------------------~~~~~~~giD~s~~~i~~a~~~------ 55 (194)
T TIGR02081 13 PGSRVLDLGCGDGELL-------------ALLRD------------------EKQVRGYGIEIDQDGVLACVAR------ 55 (194)
T ss_pred CCCEEEEeCCCCCHHH-------------HHHHh------------------ccCCcEEEEeCCHHHHHHHHHc------
Confidence 5679999999999887 33322 1234578999999998887531
Q ss_pred ccccccccceecceeeeeeccccCCCCCCeeEEecccCC-C-CCCCCceeEEeeeehhhccccHHHHHHHHHHhccCCcE
Q psy1420 123 ESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEE-L-PIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGR 200 (241)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~-~~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~ 200 (241)
+++++.+|+.. + +.++++||+|+++.++++++++..+++++.+.++++..
T Consensus 56 ----------------------------~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~~~d~~~~l~e~~r~~~~~ii 107 (194)
T TIGR02081 56 ----------------------------GVNVIQGDLDEGLEAFPDKSFDYVILSQTLQATRNPEEILDEMLRVGRHAIV 107 (194)
T ss_pred ----------------------------CCeEEEEEhhhcccccCCCCcCEEEEhhHhHcCcCHHHHHHHHHHhCCeEEE
Confidence 24567777764 3 35567899999999999999999999999988775311
Q ss_pred EE-------------------E--------------EecCHHHHHHHHHHCCCceEEEEEe
Q psy1420 201 FL-------------------C--------------LEFSHEEFKSMIESAGFQYVTYENL 228 (241)
Q Consensus 201 l~-------------------i--------------~~~~~~~~~~~l~~~Gf~~~~~~~~ 228 (241)
-+ . .-++.+++.++++++||++++...+
T Consensus 108 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ll~~~Gf~v~~~~~~ 168 (194)
T TIGR02081 108 SFPNFGYWRVRWSILTKGRMPVTGELPYDWYNTPNIHFCTIADFEDLCGELNLRILDRAAF 168 (194)
T ss_pred EcCChhHHHHHHHHHhCCccccCCCCCccccCCCCcccCcHHHHHHHHHHCCCEEEEEEEe
Confidence 10 0 0122388999999999999988877
No 81
>PTZ00146 fibrillarin; Provisional
Probab=99.23 E-value=2.6e-10 Score=101.53 Aligned_cols=131 Identities=15% Similarity=0.105 Sum_probs=90.3
Q ss_pred cCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHh
Q psy1420 39 LGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAE 118 (241)
Q Consensus 39 l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~ 118 (241)
+..+++.+|||+|||+|.++ ..++..++ ....++++|+++.+.+.....+.
T Consensus 128 l~IkpG~~VLDLGaG~G~~t-------------~~lAdiVG----------------~~G~VyAVD~s~r~~~dLl~~ak 178 (293)
T PTZ00146 128 IPIKPGSKVLYLGAASGTTV-------------SHVSDLVG----------------PEGVVYAVEFSHRSGRDLTNMAK 178 (293)
T ss_pred eccCCCCEEEEeCCcCCHHH-------------HHHHHHhC----------------CCCEEEEEECcHHHHHHHHHHhh
Confidence 44688899999999999999 55555332 24579999999887765555443
Q ss_pred cCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCC---CCCCCceeEEeeeehhhccccHHHHHHHHHHhc
Q psy1420 119 ELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL---PIESDSYSAYTIAFGIRNVTRIDKALSEAYRVL 195 (241)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~L 195 (241)
+. .++.++..|+... +...+++|+|++... ...+...++.++.+.|
T Consensus 179 -------------------------~r----~NI~~I~~Da~~p~~y~~~~~~vDvV~~Dva--~pdq~~il~~na~r~L 227 (293)
T PTZ00146 179 -------------------------KR----PNIVPIIEDARYPQKYRMLVPMVDVIFADVA--QPDQARIVALNAQYFL 227 (293)
T ss_pred -------------------------hc----CCCEEEECCccChhhhhcccCCCCEEEEeCC--CcchHHHHHHHHHHhc
Confidence 11 2567778887542 112357999998763 2223345667899999
Q ss_pred cCCcEEEEEecC--------HHHH----HHHHHHCCCceEEEEEec
Q psy1420 196 KPGGRFLCLEFS--------HEEF----KSMIESAGFQYVTYENLT 229 (241)
Q Consensus 196 kpgG~l~i~~~~--------~~~~----~~~l~~~Gf~~~~~~~~~ 229 (241)
||||.|++.... .++. .++|+++||+.++..++.
T Consensus 228 KpGG~~vI~ika~~id~g~~pe~~f~~ev~~L~~~GF~~~e~v~L~ 273 (293)
T PTZ00146 228 KNGGHFIISIKANCIDSTAKPEVVFASEVQKLKKEGLKPKEQLTLE 273 (293)
T ss_pred cCCCEEEEEEeccccccCCCHHHHHHHHHHHHHHcCCceEEEEecC
Confidence 999999983211 1222 488999999988877763
No 82
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.23 E-value=1.8e-10 Score=98.51 Aligned_cols=138 Identities=9% Similarity=0.065 Sum_probs=92.3
Q ss_pred CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCC
Q psy1420 42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP 121 (241)
Q Consensus 42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~ 121 (241)
.++.+|||+|||.|..+ .-++. .+..++++|+|+.+++.+.+... ..
T Consensus 33 ~~~~rvLd~GCG~G~da-------------~~LA~-------------------~G~~V~gvD~S~~Ai~~~~~~~~-~~ 79 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDL-------------AWLAE-------------------QGHRVLGVELSEIAVEQFFAENG-LT 79 (213)
T ss_pred CCCCeEEEeCCCchhHH-------------HHHHh-------------------CCCeEEEEeCCHHHHHHHHHHcC-CC
Confidence 46679999999999998 33333 47789999999999997644322 00
Q ss_pred CccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCC-CCceeEEeeeehhhcccc--HHHHHHHHHHhccCC
Q psy1420 122 IESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIE-SDSYSAYTIAFGIRNVTR--IDKALSEAYRVLKPG 198 (241)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~D~V~~~~~l~~~~~--~~~~l~~~~~~Lkpg 198 (241)
.........+. ....++++.++|+.+++.. .++||.|+...++++++. ....++.+.++||||
T Consensus 80 ------------~~~~~~~~~~~--~~~~~v~~~~~D~~~~~~~~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpg 145 (213)
T TIGR03840 80 ------------PTVTQQGEFTR--YRAGNIEIFCGDFFALTAADLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPG 145 (213)
T ss_pred ------------cceecccccee--eecCceEEEEccCCCCCcccCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCC
Confidence 00000000000 0113688999999887642 357999999888887754 357899999999999
Q ss_pred cEEEEEecCH--------------HHHHHHHHHCCCceEEEEE
Q psy1420 199 GRFLCLEFSH--------------EEFKSMIESAGFQYVTYEN 227 (241)
Q Consensus 199 G~l~i~~~~~--------------~~~~~~l~~~Gf~~~~~~~ 227 (241)
|++++..+.. +++.+.+. .+|.+...+.
T Consensus 146 G~~ll~~~~~~~~~~~gpp~~~~~~eL~~~f~-~~~~i~~~~~ 187 (213)
T TIGR03840 146 ARQLLITLDYDQSEMAGPPFSVSPAEVEALYG-GHYEIELLES 187 (213)
T ss_pred CeEEEEEEEcCCCCCCCcCCCCCHHHHHHHhc-CCceEEEEee
Confidence 9866654332 77777775 3466555544
No 83
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.23 E-value=2.8e-10 Score=101.35 Aligned_cols=138 Identities=18% Similarity=0.243 Sum_probs=99.8
Q ss_pred CCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcC
Q psy1420 41 PTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEEL 120 (241)
Q Consensus 41 ~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~ 120 (241)
..++.+|||+|||+|..+ ..++. . ....+++++|+|+.+++.+++++.
T Consensus 119 ~~~~~~vLDlG~GsG~i~-------------~~la~----~-------------~~~~~v~avDis~~al~~A~~n~~-- 166 (284)
T TIGR03533 119 PEPVKRILDLCTGSGCIA-------------IACAY----A-------------FPEAEVDAVDISPDALAVAEINIE-- 166 (284)
T ss_pred cCCCCEEEEEeCchhHHH-------------HHHHH----H-------------CCCCEEEEEECCHHHHHHHHHHHH--
Confidence 344568999999999988 33332 0 024689999999999999999988
Q ss_pred CCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeeh------h-------hcc------
Q psy1420 121 PIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFG------I-------RNV------ 181 (241)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~------l-------~~~------ 181 (241)
..++. .+++++++|+.+. .+.++||+|+++-- + ++-
T Consensus 167 -----------------------~~~~~-~~i~~~~~D~~~~-~~~~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~ 221 (284)
T TIGR03533 167 -----------------------RHGLE-DRVTLIQSDLFAA-LPGRKYDLIVSNPPYVDAEDMADLPAEYHHEPELALA 221 (284)
T ss_pred -----------------------HcCCC-CcEEEEECchhhc-cCCCCccEEEECCCCCCccchhhCCHhhhcCHHHHhc
Confidence 55554 4688999997542 33457999998611 1 110
Q ss_pred ------ccHHHHHHHHHHhccCCcEEEEEe-cCHHHHHHHHHHCCCceEEEEEecCceeEE
Q psy1420 182 ------TRIDKALSEAYRVLKPGGRFLCLE-FSHEEFKSMIESAGFQYVTYENLTFGVVAI 235 (241)
Q Consensus 182 ------~~~~~~l~~~~~~LkpgG~l~i~~-~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~ 235 (241)
.....+++.+.++|+|||++++-. ...+.+.+++.++||.+.......-|+...
T Consensus 222 gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 282 (284)
T TIGR03533 222 SGEDGLDLVRRILAEAADHLNENGVLVVEVGNSMEALEEAYPDVPFTWLEFENGGDGVFLL 282 (284)
T ss_pred CCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcCHHHHHHHHHhCCCceeeecCCCcEEEEE
Confidence 123577899999999999998733 344788999999999998887766665543
No 84
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=99.22 E-value=2.4e-11 Score=103.80 Aligned_cols=161 Identities=15% Similarity=0.206 Sum_probs=116.9
Q ss_pred hHHHHHhhhhhccccc-hhhhhhhhHHHHHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhh
Q psy1420 4 PMYEVFENVAKSYDTM-NDAMSFGIHRLWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLI 82 (241)
Q Consensus 4 ~~~~~f~~~~~~yd~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (241)
.+...||..+..|+.+ .+....... ....+++...+..+=.++||+|||||... ..+-+
T Consensus 86 YVe~LFD~~Ae~Fd~~LVdkL~Y~vP-~~l~emI~~~~~g~F~~~lDLGCGTGL~G-------------~~lR~------ 145 (287)
T COG4976 86 YVETLFDQYAERFDHILVDKLGYSVP-ELLAEMIGKADLGPFRRMLDLGCGTGLTG-------------EALRD------ 145 (287)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCccH-HHHHHHHHhccCCccceeeecccCcCccc-------------HhHHH------
Confidence 4678899999888874 122222211 23455555666656678999999999988 44433
Q ss_pred hcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCC
Q psy1420 83 AGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL 162 (241)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 162 (241)
....++|+|+|.+|++.+..+-- --.+.++++...
T Consensus 146 -------------~a~~ltGvDiS~nMl~kA~eKg~--------------------------------YD~L~~Aea~~F 180 (287)
T COG4976 146 -------------MADRLTGVDISENMLAKAHEKGL--------------------------------YDTLYVAEAVLF 180 (287)
T ss_pred -------------HHhhccCCchhHHHHHHHHhccc--------------------------------hHHHHHHHHHHH
Confidence 24579999999999999876421 012233333311
Q ss_pred -C-CCCCceeEEeeeehhhccccHHHHHHHHHHhccCCcEEEEEecCH------------------HHHHHHHHHCCCce
Q psy1420 163 -P-IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH------------------EEFKSMIESAGFQY 222 (241)
Q Consensus 163 -~-~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~------------------~~~~~~l~~~Gf~~ 222 (241)
+ ...+++|+|++.-++.++.+.+.++-.+...|+|||.|.++.-.. ..+...++..||.+
T Consensus 181 l~~~~~er~DLi~AaDVl~YlG~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l~ps~RyAH~~~YVr~~l~~~Gl~~ 260 (287)
T COG4976 181 LEDLTQERFDLIVAADVLPYLGALEGLFAGAAGLLAPGGLFAFSVETLPDDGGFVLGPSQRYAHSESYVRALLAASGLEV 260 (287)
T ss_pred hhhccCCcccchhhhhHHHhhcchhhHHHHHHHhcCCCceEEEEecccCCCCCeecchhhhhccchHHHHHHHHhcCceE
Confidence 1 346789999999999999999999999999999999999865222 78899999999999
Q ss_pred EEEEEec
Q psy1420 223 VTYENLT 229 (241)
Q Consensus 223 ~~~~~~~ 229 (241)
+.+++.+
T Consensus 261 i~~~~tt 267 (287)
T COG4976 261 IAIEDTT 267 (287)
T ss_pred EEeeccc
Confidence 9998875
No 85
>KOG1271|consensus
Probab=99.22 E-value=2e-10 Score=95.18 Aligned_cols=127 Identities=20% Similarity=0.335 Sum_probs=99.6
Q ss_pred eEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCCccc
Q psy1420 46 KLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIESD 125 (241)
Q Consensus 46 ~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~ 125 (241)
+|||+|||.|... .+++. +.-...++|+|+|+.+++.|...++
T Consensus 70 ~VlDLGtGNG~~L-------------~~L~~-----------------egf~~~L~GvDYs~~AV~LA~niAe------- 112 (227)
T KOG1271|consen 70 RVLDLGTGNGHLL-------------FQLAK-----------------EGFQSKLTGVDYSEKAVELAQNIAE------- 112 (227)
T ss_pred ceeeccCCchHHH-------------HHHHH-----------------hcCCCCccccccCHHHHHHHHHHHH-------
Confidence 9999999999877 55544 1123459999999999999998888
Q ss_pred cccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhcc--------ccHHHHHHHHHHhccC
Q psy1420 126 SYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNV--------TRIDKALSEAYRVLKP 197 (241)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~--------~~~~~~l~~~~~~Lkp 197 (241)
..+++ ..++|.+.|+.......++||+|+.-..+..+ ..+...+..+.++|+|
T Consensus 113 ------------------~~~~~-n~I~f~q~DI~~~~~~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~ 173 (227)
T KOG1271|consen 113 ------------------RDGFS-NEIRFQQLDITDPDFLSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSP 173 (227)
T ss_pred ------------------hcCCC-cceeEEEeeccCCcccccceeEEeecCceeeeecCCCCcccceeeehhhHhhccCC
Confidence 66666 45999999999887778899999976655432 1335678889999999
Q ss_pred CcEEEEEe--cCHHHHHHHHHHCCCceEEEEEe
Q psy1420 198 GGRFLCLE--FSHEEFKSMIESAGFQYVTYENL 228 (241)
Q Consensus 198 gG~l~i~~--~~~~~~~~~l~~~Gf~~~~~~~~ 228 (241)
||+++|.. +..+++.+.++..||.+....+.
T Consensus 174 ~gifvItSCN~T~dELv~~f~~~~f~~~~tvp~ 206 (227)
T KOG1271|consen 174 GGIFVITSCNFTKDELVEEFENFNFEYLSTVPT 206 (227)
T ss_pred CcEEEEEecCccHHHHHHHHhcCCeEEEEeecc
Confidence 99999965 55599999999999987654443
No 86
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.21 E-value=8.7e-10 Score=98.90 Aligned_cols=140 Identities=19% Similarity=0.202 Sum_probs=87.6
Q ss_pred HHHHHhhhhh--ccccchhhhhhhhHHHHHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhh
Q psy1420 5 MYEVFENVAK--SYDTMNDAMSFGIHRLWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLI 82 (241)
Q Consensus 5 ~~~~f~~~~~--~yd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (241)
..+.|+.+.. .|-....- ..+.+...+.+...+. ++.+|||+|||+|..+ ..++. .+
T Consensus 27 G~~lf~~i~~~peYy~tr~E--~~il~~~~~~ia~~~~--~~~~iLELGcGtG~~t-------------~~Ll~----~l 85 (301)
T TIGR03438 27 GSELFEQICELPEYYPTRTE--AAILERHADEIAAATG--AGCELVELGSGSSRKT-------------RLLLD----AL 85 (301)
T ss_pred HHHHHHHHHCCCccccHHHH--HHHHHHHHHHHHHhhC--CCCeEEecCCCcchhH-------------HHHHH----hh
Confidence 4566776654 23221111 1222333444544443 5578999999999988 44444 11
Q ss_pred hcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCC-
Q psy1420 83 AGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEE- 161 (241)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~- 161 (241)
. ....++++|+|+.|++.+.+++. .. .+.-++.++++|+..
T Consensus 86 ~------------~~~~~~~iDiS~~mL~~a~~~l~-------------------------~~-~p~~~v~~i~gD~~~~ 127 (301)
T TIGR03438 86 R------------QPARYVPIDISADALKESAAALA-------------------------AD-YPQLEVHGICADFTQP 127 (301)
T ss_pred c------------cCCeEEEEECCHHHHHHHHHHHH-------------------------hh-CCCceEEEEEEcccch
Confidence 0 14579999999999999988765 21 111236678888775
Q ss_pred CCCCCC----ceeEEeeeehhhcccc--HHHHHHHHHHhccCCcEEEE
Q psy1420 162 LPIESD----SYSAYTIAFGIRNVTR--IDKALSEAYRVLKPGGRFLC 203 (241)
Q Consensus 162 ~~~~~~----~~D~V~~~~~l~~~~~--~~~~l~~~~~~LkpgG~l~i 203 (241)
.+.... ...++++...+++++. ...+|++++++|+|||.+++
T Consensus 128 ~~~~~~~~~~~~~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~li 175 (301)
T TIGR03438 128 LALPPEPAAGRRLGFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLI 175 (301)
T ss_pred hhhhcccccCCeEEEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence 333322 2334555566777654 45799999999999999986
No 87
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.21 E-value=3.3e-10 Score=95.13 Aligned_cols=136 Identities=19% Similarity=0.255 Sum_probs=93.8
Q ss_pred HHHHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChH
Q psy1420 29 RLWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNP 108 (241)
Q Consensus 29 ~~~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~ 108 (241)
+..+..+...+...++.+|||+|||+|..+ ..++. . ....+++++|+++.
T Consensus 26 ~~v~~~l~~~l~~~~~~~VLDiG~G~G~~~-------------~~la~----~-------------~~~~~V~~vD~s~~ 75 (196)
T PRK07402 26 REVRLLLISQLRLEPDSVLWDIGAGTGTIP-------------VEAGL----L-------------CPKGRVIAIERDEE 75 (196)
T ss_pred HHHHHHHHHhcCCCCCCEEEEeCCCCCHHH-------------HHHHH----H-------------CCCCEEEEEeCCHH
Confidence 344556677777778889999999999987 33322 0 02468999999999
Q ss_pred hHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCC-CCCCCceeEEeeeehhhccccHHHH
Q psy1420 109 RLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL-PIESDSYSAYTIAFGIRNVTRIDKA 187 (241)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~D~V~~~~~l~~~~~~~~~ 187 (241)
+++.+++++. +.++. +++++.+|+... +.....+|.++... ..+...+
T Consensus 76 ~~~~a~~n~~-------------------------~~~~~--~v~~~~~d~~~~~~~~~~~~d~v~~~~----~~~~~~~ 124 (196)
T PRK07402 76 VVNLIRRNCD-------------------------RFGVK--NVEVIEGSAPECLAQLAPAPDRVCIEG----GRPIKEI 124 (196)
T ss_pred HHHHHHHHHH-------------------------HhCCC--CeEEEECchHHHHhhCCCCCCEEEEEC----CcCHHHH
Confidence 9999999887 44443 578888887542 21122356665432 2356789
Q ss_pred HHHHHHhccCCcEEEEEecCHHH---HHHHHHHC---CCceEEE
Q psy1420 188 LSEAYRVLKPGGRFLCLEFSHEE---FKSMIESA---GFQYVTY 225 (241)
Q Consensus 188 l~~~~~~LkpgG~l~i~~~~~~~---~~~~l~~~---Gf~~~~~ 225 (241)
++++.++|+|||++++.....+. ..+.+++. ++++++.
T Consensus 125 l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (196)
T PRK07402 125 LQAVWQYLKPGGRLVATASSLEGLYAISEGLAQLQARNIEVVQA 168 (196)
T ss_pred HHHHHHhcCCCeEEEEEeecHHHHHHHHHHHHhcCCCCceEEEE
Confidence 99999999999999998776633 44555443 4555544
No 88
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.21 E-value=1e-10 Score=97.87 Aligned_cols=122 Identities=18% Similarity=0.240 Sum_probs=95.4
Q ss_pred CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCC
Q psy1420 42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP 121 (241)
Q Consensus 42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~ 121 (241)
.|+.+|||+|||.|.+. ..+. +.......|+|+++..+..+.++
T Consensus 12 ~pgsrVLDLGCGdG~LL-------------~~L~------------------~~k~v~g~GvEid~~~v~~cv~r----- 55 (193)
T PF07021_consen 12 EPGSRVLDLGCGDGELL-------------AYLK------------------DEKQVDGYGVEIDPDNVAACVAR----- 55 (193)
T ss_pred CCCCEEEecCCCchHHH-------------HHHH------------------HhcCCeEEEEecCHHHHHHHHHc-----
Confidence 46889999999999876 2222 23567899999999988877643
Q ss_pred CccccccccceecceeeeeeccccCCCCCCeeEEecccCCC--CCCCCceeEEeeeehhhccccHHHHHHHHHHhccCCc
Q psy1420 122 IESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL--PIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGG 199 (241)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG 199 (241)
.+.++++|+++- .+++++||.|+++.++.++.+|+..|+++.|+- .
T Consensus 56 -----------------------------Gv~Viq~Dld~gL~~f~d~sFD~VIlsqtLQ~~~~P~~vL~EmlRVg---r 103 (193)
T PF07021_consen 56 -----------------------------GVSVIQGDLDEGLADFPDQSFDYVILSQTLQAVRRPDEVLEEMLRVG---R 103 (193)
T ss_pred -----------------------------CCCEEECCHHHhHhhCCCCCccEEehHhHHHhHhHHHHHHHHHHHhc---C
Confidence 356889998763 477899999999999999999999999998873 3
Q ss_pred EEEEEe--cCH----------------------------------HHHHHHHHHCCCceEEEEEecCc
Q psy1420 200 RFLCLE--FSH----------------------------------EEFKSMIESAGFQYVTYENLTFG 231 (241)
Q Consensus 200 ~l~i~~--~~~----------------------------------~~~~~~l~~~Gf~~~~~~~~~~~ 231 (241)
..+++- |.+ .+++++.++.|+++++...+..+
T Consensus 104 ~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdTPNih~~Ti~DFe~lc~~~~i~I~~~~~~~~~ 171 (193)
T PF07021_consen 104 RAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDTPNIHLCTIKDFEDLCRELGIRIEERVFLDGG 171 (193)
T ss_pred eEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCCCCcccccHHHHHHHHHHCCCEEEEEEEEcCC
Confidence 334322 222 99999999999999988877543
No 89
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.19 E-value=9.5e-10 Score=96.50 Aligned_cols=148 Identities=20% Similarity=0.213 Sum_probs=99.5
Q ss_pred HHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHH
Q psy1420 33 DIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRF 112 (241)
Q Consensus 33 ~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~ 112 (241)
+.+.......++.+|||+|||+|..+ ..++. .. +...++++|+++.+++.
T Consensus 98 ~~~~~~~~~~~~~~vLDiG~GsG~~~-------------~~la~----~~-------------~~~~v~~iDis~~~l~~ 147 (275)
T PRK09328 98 EWALEALLLKEPLRVLDLGTGSGAIA-------------LALAK----ER-------------PDAEVTAVDISPEALAV 147 (275)
T ss_pred HHHHHhccccCCCEEEEEcCcHHHHH-------------HHHHH----HC-------------CCCEEEEEECCHHHHHH
Confidence 34444444567789999999999987 43333 11 24679999999999999
Q ss_pred HHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhh-------------
Q psy1420 113 LEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIR------------- 179 (241)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~------------- 179 (241)
+++++. ... . .++.+..+|+... ...++||+|+++-...
T Consensus 148 a~~n~~-------------------------~~~-~-~~i~~~~~d~~~~-~~~~~fD~Iv~npPy~~~~~~~~~~~~v~ 199 (275)
T PRK09328 148 ARRNAK-------------------------HGL-G-ARVEFLQGDWFEP-LPGGRFDLIVSNPPYIPEADIHLLQPEVR 199 (275)
T ss_pred HHHHHH-------------------------hCC-C-CcEEEEEccccCc-CCCCceeEEEECCCcCCcchhhhCCchhh
Confidence 998865 111 1 3678888887543 2346899999852111
Q ss_pred -------------ccccHHHHHHHHHHhccCCcEEEEEec--CHHHHHHHHHHCCCceEEEEEecCceeEEEee
Q psy1420 180 -------------NVTRIDKALSEAYRVLKPGGRFLCLEF--SHEEFKSMIESAGFQYVTYENLTFGVVAIHSG 238 (241)
Q Consensus 180 -------------~~~~~~~~l~~~~~~LkpgG~l~i~~~--~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~ 238 (241)
......++++++.++|+|||++++..- ..+.+.+++++.||..++...-..|.-.+..+
T Consensus 200 ~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g~~~~~~~~~~l~~~gf~~v~~~~d~~~~~r~~~~ 273 (275)
T PRK09328 200 DHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIGYDQGEAVRALLAAAGFADVETRKDLAGRDRVVLG 273 (275)
T ss_pred hcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEECchHHHHHHHHHHhCCCceeEEecCCCCCceEEEE
Confidence 012246788889999999999987431 12779999999999866654333444444444
No 90
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.18 E-value=5.8e-10 Score=100.41 Aligned_cols=133 Identities=20% Similarity=0.249 Sum_probs=96.0
Q ss_pred CeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCCcc
Q psy1420 45 TKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIES 124 (241)
Q Consensus 45 ~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~ 124 (241)
.+|||+|||+|..+ ..++. . .+..+++++|+|+.+++.+++++.
T Consensus 135 ~~VLDlG~GsG~ia-------------i~la~----~-------------~p~~~V~avDis~~al~~A~~n~~------ 178 (307)
T PRK11805 135 TRILDLCTGSGCIA-------------IACAY----A-------------FPDAEVDAVDISPDALAVAEINIE------ 178 (307)
T ss_pred CEEEEEechhhHHH-------------HHHHH----H-------------CCCCEEEEEeCCHHHHHHHHHHHH------
Confidence 68999999999988 33332 0 135689999999999999999988
Q ss_pred ccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeee------hh-------hcc----------
Q psy1420 125 DSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAF------GI-------RNV---------- 181 (241)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~------~l-------~~~---------- 181 (241)
..++. .+++++++|+.+. .+.++||+|+++- .+ ++-
T Consensus 179 -------------------~~~l~-~~i~~~~~D~~~~-l~~~~fDlIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~d 237 (307)
T PRK11805 179 -------------------RHGLE-DRVTLIESDLFAA-LPGRRYDLIVSNPPYVDAEDMADLPAEYRHEPELALAAGDD 237 (307)
T ss_pred -------------------HhCCC-CcEEEEECchhhh-CCCCCccEEEECCCCCCccchhhcCHhhccCccceeeCCCc
Confidence 55554 4688999997542 2345799999861 00 111
Q ss_pred --ccHHHHHHHHHHhccCCcEEEEEe-cCHHHHHHHHHHCCCceEEEEEecCceeE
Q psy1420 182 --TRIDKALSEAYRVLKPGGRFLCLE-FSHEEFKSMIESAGFQYVTYENLTFGVVA 234 (241)
Q Consensus 182 --~~~~~~l~~~~~~LkpgG~l~i~~-~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~ 234 (241)
.....+++.+.++|+|||++++-. ...+.+.+++.+.||.+.......+++..
T Consensus 238 Gl~~~~~i~~~a~~~L~pgG~l~~E~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (307)
T PRK11805 238 GLDLVRRILAEAPDYLTEDGVLVVEVGNSRVHLEEAYPDVPFTWLEFENGGDGVFL 293 (307)
T ss_pred hHHHHHHHHHHHHHhcCCCCEEEEEECcCHHHHHHHHhhCCCEEEEecCCCceEEE
Confidence 123578899999999999998732 33467888999999988777765555443
No 91
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.18 E-value=4.5e-10 Score=102.59 Aligned_cols=126 Identities=14% Similarity=0.162 Sum_probs=89.3
Q ss_pred HHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHH
Q psy1420 32 KDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLR 111 (241)
Q Consensus 32 ~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~ 111 (241)
.+.+++.+......+|||+|||+|..+ ..+.. . .+..+++++|+++.+++
T Consensus 185 t~lLl~~l~~~~~g~VLDlGCG~G~ls-------------~~la~-------~----------~p~~~v~~vDis~~Al~ 234 (342)
T PRK09489 185 SQLLLSTLTPHTKGKVLDVGCGAGVLS-------------AVLAR-------H----------SPKIRLTLSDVSAAALE 234 (342)
T ss_pred HHHHHHhccccCCCeEEEeccCcCHHH-------------HHHHH-------h----------CCCCEEEEEECCHHHHH
Confidence 355666666555668999999999988 33332 0 02457999999999999
Q ss_pred HHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhcc-----ccHHH
Q psy1420 112 FLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNV-----TRIDK 186 (241)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~-----~~~~~ 186 (241)
.++.++. ..++. .++...|.... ..++||+|+++..+|.. .....
T Consensus 235 ~A~~nl~-------------------------~n~l~---~~~~~~D~~~~--~~~~fDlIvsNPPFH~g~~~~~~~~~~ 284 (342)
T PRK09489 235 SSRATLA-------------------------ANGLE---GEVFASNVFSD--IKGRFDMIISNPPFHDGIQTSLDAAQT 284 (342)
T ss_pred HHHHHHH-------------------------HcCCC---CEEEEcccccc--cCCCccEEEECCCccCCccccHHHHHH
Confidence 9999887 43433 35566665442 25689999999887752 34578
Q ss_pred HHHHHHHhccCCcEEEEEecCHHHHHHHHHH
Q psy1420 187 ALSEAYRVLKPGGRFLCLEFSHEEFKSMIES 217 (241)
Q Consensus 187 ~l~~~~~~LkpgG~l~i~~~~~~~~~~~l~~ 217 (241)
+++.+.++|||||.++++....-....++++
T Consensus 285 ~i~~a~~~LkpgG~L~iVan~~l~y~~~l~~ 315 (342)
T PRK09489 285 LIRGAVRHLNSGGELRIVANAFLPYPDLLDE 315 (342)
T ss_pred HHHHHHHhcCcCCEEEEEEeCCCChHHHHHH
Confidence 9999999999999998876554333344443
No 92
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.16 E-value=1.1e-09 Score=97.45 Aligned_cols=138 Identities=20% Similarity=0.220 Sum_probs=95.0
Q ss_pred CeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCCcc
Q psy1420 45 TKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIES 124 (241)
Q Consensus 45 ~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~ 124 (241)
.+|||+|||+|..+ ..++. . . ...+++++|+|+.+++.+++++.
T Consensus 116 ~~vLDlG~GsG~i~-------------l~la~----~---~----------~~~~v~avDis~~al~~a~~n~~------ 159 (284)
T TIGR00536 116 LHILDLGTGSGCIA-------------LALAY----E---F----------PNAEVIAVDISPDALAVAEENAE------ 159 (284)
T ss_pred CEEEEEeccHhHHH-------------HHHHH----H---C----------CCCEEEEEECCHHHHHHHHHHHH------
Confidence 68999999999987 33333 1 0 24579999999999999999987
Q ss_pred ccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeee-------------hhhcc----------
Q psy1420 125 DSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAF-------------GIRNV---------- 181 (241)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~-------------~l~~~---------- 181 (241)
..++. .+++++++|+.+. .+..+||+|+++- ...+-
T Consensus 160 -------------------~~~~~-~~v~~~~~d~~~~-~~~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~d 218 (284)
T TIGR00536 160 -------------------KNQLE-HRVEFIQSNLFEP-LAGQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDD 218 (284)
T ss_pred -------------------HcCCC-CcEEEEECchhcc-CcCCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCc
Confidence 44443 3588888887653 3334799999851 11111
Q ss_pred --ccHHHHHHHHHHhccCCcEEEEEecC--HHHHHHHHH-HCCCceEEEEEecCceeEEEeee
Q psy1420 182 --TRIDKALSEAYRVLKPGGRFLCLEFS--HEEFKSMIE-SAGFQYVTYENLTFGVVAIHSGF 239 (241)
Q Consensus 182 --~~~~~~l~~~~~~LkpgG~l~i~~~~--~~~~~~~l~-~~Gf~~~~~~~~~~~~~~~~~~~ 239 (241)
.....+++.+.++|+|||++++-.-. ...+.+++. +.||..+++..=..|.-.+..++
T Consensus 219 gl~~~~~ii~~a~~~L~~gG~l~~e~g~~q~~~~~~~~~~~~~~~~~~~~~D~~g~~R~~~~~ 281 (284)
T TIGR00536 219 GLNILRQIIELAPDYLKPNGFLVCEIGNWQQKSLKELLRIKFTWYDVENGRDLNGKERVVLGF 281 (284)
T ss_pred HHHHHHHHHHHHHHhccCCCEEEEEECccHHHHHHHHHHhcCCCceeEEecCCCCCceEEEEE
Confidence 13567889999999999998773322 267788888 46886555443345555555554
No 93
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.16 E-value=3.9e-10 Score=95.81 Aligned_cols=110 Identities=7% Similarity=0.035 Sum_probs=81.9
Q ss_pred HHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhH
Q psy1420 31 WKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRL 110 (241)
Q Consensus 31 ~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~ 110 (241)
....+...+...++.+|||+|||+|..+ ..+.. ....++++|+++.++
T Consensus 66 ~~~~l~~~l~~~~~~~VLeiG~GsG~~t-------------~~la~-------------------~~~~v~~vd~~~~~~ 113 (212)
T PRK00312 66 MVARMTELLELKPGDRVLEIGTGSGYQA-------------AVLAH-------------------LVRRVFSVERIKTLQ 113 (212)
T ss_pred HHHHHHHhcCCCCCCEEEEECCCccHHH-------------HHHHH-------------------HhCEEEEEeCCHHHH
Confidence 3456667777788899999999999988 32222 123699999999999
Q ss_pred HHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHHH
Q psy1420 111 RFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSE 190 (241)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~ 190 (241)
+.+++++. +.++. ++++..+|........++||+|++...++++ ...
T Consensus 114 ~~a~~~~~-------------------------~~~~~--~v~~~~~d~~~~~~~~~~fD~I~~~~~~~~~------~~~ 160 (212)
T PRK00312 114 WEAKRRLK-------------------------QLGLH--NVSVRHGDGWKGWPAYAPFDRILVTAAAPEI------PRA 160 (212)
T ss_pred HHHHHHHH-------------------------HCCCC--ceEEEECCcccCCCcCCCcCEEEEccCchhh------hHH
Confidence 99999887 44544 4788888875532234689999987765544 345
Q ss_pred HHHhccCCcEEEEEe
Q psy1420 191 AYRVLKPGGRFLCLE 205 (241)
Q Consensus 191 ~~~~LkpgG~l~i~~ 205 (241)
+.+.|+|||++++..
T Consensus 161 l~~~L~~gG~lv~~~ 175 (212)
T PRK00312 161 LLEQLKEGGILVAPV 175 (212)
T ss_pred HHHhcCCCcEEEEEE
Confidence 788999999998854
No 94
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.15 E-value=1.5e-10 Score=98.12 Aligned_cols=111 Identities=15% Similarity=0.172 Sum_probs=91.1
Q ss_pred HHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHH
Q psy1420 32 KDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLR 111 (241)
Q Consensus 32 ~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~ 111 (241)
...++..+...+..+|.|+|||+|+.+. ++...+ +...++|+|-|+.|++
T Consensus 19 a~dLla~Vp~~~~~~v~DLGCGpGnsTe---------------------lL~~Rw---------P~A~i~GiDsS~~Mla 68 (257)
T COG4106 19 ARDLLARVPLERPRRVVDLGCGPGNSTE---------------------LLARRW---------PDAVITGIDSSPAMLA 68 (257)
T ss_pred HHHHHhhCCccccceeeecCCCCCHHHH---------------------HHHHhC---------CCCeEeeccCCHHHHH
Confidence 3456677777778899999999999982 222232 4789999999999999
Q ss_pred HHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHHHH
Q psy1420 112 FLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEA 191 (241)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~~ 191 (241)
.|..+.. +++|..+|+..-. ++.+.|+++++.+++++++=...|.++
T Consensus 69 ~Aa~rlp--------------------------------~~~f~~aDl~~w~-p~~~~dllfaNAvlqWlpdH~~ll~rL 115 (257)
T COG4106 69 KAAQRLP--------------------------------DATFEEADLRTWK-PEQPTDLLFANAVLQWLPDHPELLPRL 115 (257)
T ss_pred HHHHhCC--------------------------------CCceecccHhhcC-CCCccchhhhhhhhhhccccHHHHHHH
Confidence 9976543 6788899988763 345789999999999999999999999
Q ss_pred HHhccCCcEEEEEe
Q psy1420 192 YRVLKPGGRFLCLE 205 (241)
Q Consensus 192 ~~~LkpgG~l~i~~ 205 (241)
...|.|||.|.+.-
T Consensus 116 ~~~L~Pgg~LAVQm 129 (257)
T COG4106 116 VSQLAPGGVLAVQM 129 (257)
T ss_pred HHhhCCCceEEEEC
Confidence 99999999999853
No 95
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.14 E-value=6.8e-10 Score=102.50 Aligned_cols=119 Identities=22% Similarity=0.298 Sum_probs=90.2
Q ss_pred HHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHH
Q psy1420 33 DIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRF 112 (241)
Q Consensus 33 ~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~ 112 (241)
+.+.+.+....+..+||+|||+|..+ ..++. .. +...++|+|+++.+++.
T Consensus 112 ~~~~~~~~~~~~p~vLEIGcGsG~~l-------------l~lA~-------~~----------P~~~~iGIEI~~~~i~~ 161 (390)
T PRK14121 112 DNFLDFISKNQEKILIEIGFGSGRHL-------------LYQAK-------NN----------PNKLFIGIEIHTPSIEQ 161 (390)
T ss_pred HHHHHHhcCCCCCeEEEEcCcccHHH-------------HHHHH-------hC----------CCCCEEEEECCHHHHHH
Confidence 45566666666779999999999988 33333 11 35689999999999999
Q ss_pred HHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCC--CCCCCceeEEeeeehhhccccH------
Q psy1420 113 LEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL--PIESDSYSAYTIAFGIRNVTRI------ 184 (241)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~D~V~~~~~l~~~~~~------ 184 (241)
+.+++. ..++. ++.++++|+..+ .++++++|.|++++...|....
T Consensus 162 a~~ka~-------------------------~~gL~--NV~~i~~DA~~ll~~~~~~s~D~I~lnFPdPW~KkrHRRlv~ 214 (390)
T PRK14121 162 VLKQIE-------------------------LLNLK--NLLIINYDARLLLELLPSNSVEKIFVHFPVPWDKKPHRRVIS 214 (390)
T ss_pred HHHHHH-------------------------HcCCC--cEEEEECCHHHhhhhCCCCceeEEEEeCCCCccccchhhccH
Confidence 998887 55655 689999998654 4567899999986544332211
Q ss_pred HHHHHHHHHhccCCcEEEEEecCH
Q psy1420 185 DKALSEAYRVLKPGGRFLCLEFSH 208 (241)
Q Consensus 185 ~~~l~~~~~~LkpgG~l~i~~~~~ 208 (241)
..+++++.|+|+|||.+.+.+-..
T Consensus 215 ~~fL~e~~RvLkpGG~l~l~TD~~ 238 (390)
T PRK14121 215 EDFLNEALRVLKPGGTLELRTDSE 238 (390)
T ss_pred HHHHHHHHHHcCCCcEEEEEEECH
Confidence 689999999999999999876555
No 96
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.13 E-value=1.1e-09 Score=94.15 Aligned_cols=141 Identities=11% Similarity=0.058 Sum_probs=93.1
Q ss_pred CCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhc
Q psy1420 40 GPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEE 119 (241)
Q Consensus 40 ~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~ 119 (241)
...++.+|||+|||.|..+ ..++. .+..|+++|+|+.+++.+.+...
T Consensus 34 ~~~~~~rvL~~gCG~G~da-------------~~LA~-------------------~G~~V~avD~s~~Ai~~~~~~~~- 80 (218)
T PRK13255 34 ALPAGSRVLVPLCGKSLDM-------------LWLAE-------------------QGHEVLGVELSELAVEQFFAENG- 80 (218)
T ss_pred CCCCCCeEEEeCCCChHhH-------------HHHHh-------------------CCCeEEEEccCHHHHHHHHHHcC-
Confidence 3356679999999999988 33333 47789999999999998643221
Q ss_pred CCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCC-CCceeEEeeeehhhcccc--HHHHHHHHHHhcc
Q psy1420 120 LPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIE-SDSYSAYTIAFGIRNVTR--IDKALSEAYRVLK 196 (241)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~D~V~~~~~l~~~~~--~~~~l~~~~~~Lk 196 (241)
+. ....... ........++++.++|+.+++.. ...||.|+...++++++. ..+.+..+.++|+
T Consensus 81 l~------------~~~~~~~--~~~~~~~~~v~~~~~D~~~l~~~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~ 146 (218)
T PRK13255 81 LT------------PQTRQSG--EFEHYQAGEITIYCGDFFALTAADLADVDAVYDRAALIALPEEMRERYVQQLAALLP 146 (218)
T ss_pred CC------------ccccccc--cccccccCceEEEECcccCCCcccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcC
Confidence 00 0000000 00011124688999999887533 257999999888887753 4689999999999
Q ss_pred CCcEEEEEe--cCH------------HHHHHHHHHCCCceEEEEEe
Q psy1420 197 PGGRFLCLE--FSH------------EEFKSMIESAGFQYVTYENL 228 (241)
Q Consensus 197 pgG~l~i~~--~~~------------~~~~~~l~~~Gf~~~~~~~~ 228 (241)
|||++++.. +.. +++.+.+.. +|.+...+..
T Consensus 147 pgG~~~l~~~~~~~~~~~gPp~~~~~~el~~~~~~-~~~i~~~~~~ 191 (218)
T PRK13255 147 AGCRGLLVTLDYPQEELAGPPFSVSDEEVEALYAG-CFEIELLERQ 191 (218)
T ss_pred CCCeEEEEEEEeCCccCCCCCCCCCHHHHHHHhcC-CceEEEeeec
Confidence 998755432 221 778887752 3666655543
No 97
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=99.13 E-value=1.2e-09 Score=93.15 Aligned_cols=128 Identities=18% Similarity=0.227 Sum_probs=90.0
Q ss_pred CCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCC
Q psy1420 43 HDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPI 122 (241)
Q Consensus 43 ~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~ 122 (241)
+..+.||+|+|-|..+ ..++- ....++..+|+.+..++.|++...
T Consensus 55 ~~~~alDcGAGIGRVT-------------k~lLl------------------~~f~~VDlVEp~~~Fl~~a~~~l~---- 99 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVT-------------KGLLL------------------PVFDEVDLVEPVEKFLEQAKEYLG---- 99 (218)
T ss_dssp --SEEEEET-TTTHHH-------------HHTCC------------------CC-SEEEEEES-HHHHHHHHHHTC----
T ss_pred CcceEEecccccchhH-------------HHHHH------------------HhcCEeEEeccCHHHHHHHHHHhc----
Confidence 3568999999999999 55533 145689999999999999987665
Q ss_pred ccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccH--HHHHHHHHHhccCCcE
Q psy1420 123 ESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRI--DKALSEAYRVLKPGGR 200 (241)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~--~~~l~~~~~~LkpgG~ 200 (241)
+.. . .-.++.+..+++...++.+||+|++.+++.|++|. ..+|.++...|+|+|.
T Consensus 100 ---------------------~~~-~-~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lghLTD~dlv~fL~RCk~~L~~~G~ 156 (218)
T PF05891_consen 100 ---------------------KDN-P-RVGEFYCVGLQDFTPEEGKYDLIWIQWCLGHLTDEDLVAFLKRCKQALKPNGV 156 (218)
T ss_dssp ---------------------CGG-C-CEEEEEES-GGG----TT-EEEEEEES-GGGS-HHHHHHHHHHHHHHEEEEEE
T ss_pred ---------------------ccC-C-CcceEEecCHhhccCCCCcEeEEEehHhhccCCHHHHHHHHHHHHHhCcCCcE
Confidence 100 0 22466777777664445799999999999999865 6999999999999999
Q ss_pred EEEEecCH------------------HHHHHHHHHCCCceEEEEEe
Q psy1420 201 FLCLEFSH------------------EEFKSMIESAGFQYVTYENL 228 (241)
Q Consensus 201 l~i~~~~~------------------~~~~~~l~~~Gf~~~~~~~~ 228 (241)
+++-+-.. +.+++++++||+++++.+.-
T Consensus 157 IvvKEN~~~~~~~~~D~~DsSvTRs~~~~~~lF~~AGl~~v~~~~Q 202 (218)
T PF05891_consen 157 IVVKENVSSSGFDEFDEEDSSVTRSDEHFRELFKQAGLRLVKEEKQ 202 (218)
T ss_dssp EEEEEEEESSSEEEEETTTTEEEEEHHHHHHHHHHCT-EEEEEEE-
T ss_pred EEEEecCCCCCCcccCCccCeeecCHHHHHHHHHHcCCEEEEeccc
Confidence 99854111 89999999999999987755
No 98
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.11 E-value=1.6e-09 Score=99.99 Aligned_cols=130 Identities=15% Similarity=0.137 Sum_probs=90.7
Q ss_pred HHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHH
Q psy1420 32 KDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLR 111 (241)
Q Consensus 32 ~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~ 111 (241)
.+.+++.+....+.+|||+|||+|..+ ..+.. .. +..+++++|.|+.+++
T Consensus 217 trllL~~lp~~~~~~VLDLGCGtGvi~-------------i~la~-------~~----------P~~~V~~vD~S~~Av~ 266 (378)
T PRK15001 217 ARFFMQHLPENLEGEIVDLGCGNGVIG-------------LTLLD-------KN----------PQAKVVFVDESPMAVA 266 (378)
T ss_pred HHHHHHhCCcccCCeEEEEeccccHHH-------------HHHHH-------hC----------CCCEEEEEECCHHHHH
Confidence 566777777666679999999999988 33322 11 3568999999999999
Q ss_pred HHHHHHhcCCCccccccccceecceeeeeeccccCCC-CCCeeEEecccCCCCCCCCceeEEeeeehhhccc-----cHH
Q psy1420 112 FLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIP-NPRLRFLEANAEELPIESDSYSAYTIAFGIRNVT-----RID 185 (241)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~-----~~~ 185 (241)
.+++++. ..+.. ..++++...|.... .+..+||+|+|+-.+|... ...
T Consensus 267 ~A~~N~~-------------------------~n~~~~~~~v~~~~~D~l~~-~~~~~fDlIlsNPPfh~~~~~~~~ia~ 320 (378)
T PRK15001 267 SSRLNVE-------------------------TNMPEALDRCEFMINNALSG-VEPFRFNAVLCNPPFHQQHALTDNVAW 320 (378)
T ss_pred HHHHHHH-------------------------HcCcccCceEEEEEcccccc-CCCCCEEEEEECcCcccCccCCHHHHH
Confidence 9999886 22211 02577777776543 2345899999986665431 235
Q ss_pred HHHHHHHHhccCCcEEEEEecCHHHHHHHHHH
Q psy1420 186 KALSEAYRVLKPGGRFLCLEFSHEEFKSMIES 217 (241)
Q Consensus 186 ~~l~~~~~~LkpgG~l~i~~~~~~~~~~~l~~ 217 (241)
+++..++++|+|||.++++...+-.....+++
T Consensus 321 ~l~~~a~~~LkpGG~L~iV~nr~l~y~~~L~~ 352 (378)
T PRK15001 321 EMFHHARRCLKINGELYIVANRHLDYFHKLKK 352 (378)
T ss_pred HHHHHHHHhcccCCEEEEEEecCcCHHHHHHH
Confidence 78999999999999999875444333344433
No 99
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=99.11 E-value=1.2e-09 Score=95.44 Aligned_cols=136 Identities=17% Similarity=0.271 Sum_probs=103.3
Q ss_pred HHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHH
Q psy1420 32 KDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLR 111 (241)
Q Consensus 32 ~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~ 111 (241)
...++..++..||.+|+|.|+|+|.++ ..++..+| +.++++..|..+...+
T Consensus 29 ~~~I~~~l~i~pG~~VlEaGtGSG~lt-------------~~l~r~v~----------------p~G~v~t~E~~~~~~~ 79 (247)
T PF08704_consen 29 ISYILMRLDIRPGSRVLEAGTGSGSLT-------------HALARAVG----------------PTGHVYTYEFREDRAE 79 (247)
T ss_dssp HHHHHHHTT--TT-EEEEE--TTSHHH-------------HHHHHHHT----------------TTSEEEEEESSHHHHH
T ss_pred HHHHHHHcCCCCCCEEEEecCCcHHHH-------------HHHHHHhC----------------CCeEEEccccCHHHHH
Confidence 356777888999999999999999999 55554333 4678999999999999
Q ss_pred HHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCC---CCceeEEeeeehhhccccHHHHH
Q psy1420 112 FLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIE---SDSYSAYTIAFGIRNVTRIDKAL 188 (241)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~---~~~~D~V~~~~~l~~~~~~~~~l 188 (241)
.|++++. ..++. +++++...|+....+. +..+|+|+. .+++|..++
T Consensus 80 ~A~~n~~-------------------------~~gl~-~~v~~~~~Dv~~~g~~~~~~~~~DavfL-----Dlp~Pw~~i 128 (247)
T PF08704_consen 80 KARKNFE-------------------------RHGLD-DNVTVHHRDVCEEGFDEELESDFDAVFL-----DLPDPWEAI 128 (247)
T ss_dssp HHHHHHH-------------------------HTTCC-TTEEEEES-GGCG--STT-TTSEEEEEE-----ESSSGGGGH
T ss_pred HHHHHHH-------------------------HcCCC-CCceeEecceecccccccccCcccEEEE-----eCCCHHHHH
Confidence 9999998 66765 6899999998754332 357999984 678999999
Q ss_pred HHHHHhc-cCCcEEEEEecCH---HHHHHHHHHCCCceEEEEE
Q psy1420 189 SEAYRVL-KPGGRFLCLEFSH---EEFKSMIESAGFQYVTYEN 227 (241)
Q Consensus 189 ~~~~~~L-kpgG~l~i~~~~~---~~~~~~l~~~Gf~~~~~~~ 227 (241)
..+.+.| ||||++++..... ...-+.|++.||..+++..
T Consensus 129 ~~~~~~L~~~gG~i~~fsP~ieQv~~~~~~L~~~gf~~i~~~E 171 (247)
T PF08704_consen 129 PHAKRALKKPGGRICCFSPCIEQVQKTVEALREHGFTDIETVE 171 (247)
T ss_dssp HHHHHHE-EEEEEEEEEESSHHHHHHHHHHHHHTTEEEEEEEE
T ss_pred HHHHHHHhcCCceEEEECCCHHHHHHHHHHHHHCCCeeeEEEE
Confidence 9999999 8999999888777 4556677889997765543
No 100
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.11 E-value=2.9e-09 Score=99.09 Aligned_cols=140 Identities=18% Similarity=0.206 Sum_probs=98.1
Q ss_pred CCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCC
Q psy1420 43 HDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPI 122 (241)
Q Consensus 43 ~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~ 122 (241)
++.+|||+|||+|..+ ..+.. .. ...+++++|+|+.+++.+++++.
T Consensus 251 ~~~rVLDLGcGSG~Ia-------------iaLA~-------~~----------p~a~VtAVDiS~~ALe~AreNa~---- 296 (423)
T PRK14966 251 ENGRVWDLGTGSGAVA-------------VTVAL-------ER----------PDAFVRASDISPPALETARKNAA---- 296 (423)
T ss_pred CCCEEEEEeChhhHHH-------------HHHHH-------hC----------CCCEEEEEECCHHHHHHHHHHHH----
Confidence 4568999999999987 33322 01 35679999999999999999987
Q ss_pred ccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCC-CCceeEEeeeehhh-----c----------------
Q psy1420 123 ESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIE-SDSYSAYTIAFGIR-----N---------------- 180 (241)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~D~V~~~~~l~-----~---------------- 180 (241)
..+. +++++++|+.+...+ .++||+|+++--.. .
T Consensus 297 ---------------------~~g~---rV~fi~gDl~e~~l~~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~g 352 (423)
T PRK14966 297 ---------------------DLGA---RVEFAHGSWFDTDMPSEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTD 352 (423)
T ss_pred ---------------------HcCC---cEEEEEcchhccccccCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhC
Confidence 3332 478888887654322 35799999853210 0
Q ss_pred cc----cHHHHHHHHHHhccCCcEEEEE-ecC-HHHHHHHHHHCCCceEEEEEecCceeEEEeeec
Q psy1420 181 VT----RIDKALSEAYRVLKPGGRFLCL-EFS-HEEFKSMIESAGFQYVTYENLTFGVVAIHSGFK 240 (241)
Q Consensus 181 ~~----~~~~~l~~~~~~LkpgG~l~i~-~~~-~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~~ 240 (241)
.. ....+++.+.+.|+|||.+++. ... .+.+.+++++.||..++...-..|.-.+..+++
T Consensus 353 G~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~~Q~e~V~~ll~~~Gf~~v~v~kDl~G~dR~v~~~~ 418 (423)
T PRK14966 353 FSDGLSCIRTLAQGAPDRLAEGGFLLLEHGFDQGAAVRGVLAENGFSGVETLPDLAGLDRVTLGKY 418 (423)
T ss_pred CCchHHHHHHHHHHHHHhcCCCcEEEEEECccHHHHHHHHHHHCCCcEEEEEEcCCCCcEEEEEEE
Confidence 00 1346777888899999997752 222 288999999999987776665666666666654
No 101
>KOG1541|consensus
Probab=99.10 E-value=1e-09 Score=93.45 Aligned_cols=147 Identities=15% Similarity=0.162 Sum_probs=100.9
Q ss_pred HhhhhhccccchhhhhhhhHHHHHHHHHhhcCCCC--CCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCC
Q psy1420 9 FENVAKSYDTMNDAMSFGIHRLWKDIFIDRLGPTH--DTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQW 86 (241)
Q Consensus 9 f~~~~~~yd~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (241)
.|..|..|+....+.. +...+.+..++++.... ..-|||||||+|..+ ..+..
T Consensus 16 nd~eA~kYt~nsri~~--IQ~em~eRaLELLalp~~~~~~iLDIGCGsGLSg-------------~vL~~---------- 70 (270)
T KOG1541|consen 16 NDTEAPKYTQNSRIVL--IQAEMAERALELLALPGPKSGLILDIGCGSGLSG-------------SVLSD---------- 70 (270)
T ss_pred chhhhhhccccceeee--ehHHHHHHHHHHhhCCCCCCcEEEEeccCCCcch-------------heecc----------
Confidence 3556677877543322 23445556666665543 667999999999877 22222
Q ss_pred CcchhhhcccCCCceeecCChHhHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEeccc-CCCCCC
Q psy1420 87 KPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANA-EELPIE 165 (241)
Q Consensus 87 ~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~-~~~~~~ 165 (241)
.....+|+|+|+.|++.|.+..- .-+++.+|. +.+|+.
T Consensus 71 ---------~Gh~wiGvDiSpsML~~a~~~e~--------------------------------egdlil~DMG~Glpfr 109 (270)
T KOG1541|consen 71 ---------SGHQWIGVDISPSMLEQAVEREL--------------------------------EGDLILCDMGEGLPFR 109 (270)
T ss_pred ---------CCceEEeecCCHHHHHHHHHhhh--------------------------------hcCeeeeecCCCCCCC
Confidence 45789999999999999986322 013455553 567899
Q ss_pred CCceeEEeeeehhhccc-----------cHHHHHHHHHHhccCCcEEEEEecCH-----HHHHHHHHHCCCc
Q psy1420 166 SDSYSAYTIAFGIRNVT-----------RIDKALSEAYRVLKPGGRFLCLEFSH-----EEFKSMIESAGFQ 221 (241)
Q Consensus 166 ~~~~D~V~~~~~l~~~~-----------~~~~~l~~~~~~LkpgG~l~i~~~~~-----~~~~~~l~~~Gf~ 221 (241)
+++||-+++...+.+.- .+..++..++.+|++|++.++.-+.. +.+.+....+||.
T Consensus 110 pGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpen~~q~d~i~~~a~~aGF~ 181 (270)
T KOG1541|consen 110 PGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPENEAQIDMIMQQAMKAGFG 181 (270)
T ss_pred CCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEecccchHHHHHHHHHHHhhccC
Confidence 99999999887765431 23568899999999999987743333 5666677788875
No 102
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.10 E-value=2.4e-09 Score=95.59 Aligned_cols=129 Identities=20% Similarity=0.224 Sum_probs=93.2
Q ss_pred CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCC
Q psy1420 42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP 121 (241)
Q Consensus 42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~ 121 (241)
.++.++||+|||+|-++ +..+. + ....++|+|++|.+++.++.++.
T Consensus 161 ~~g~~vlDvGcGSGILa-------------IAa~k-----L-------------GA~~v~g~DiDp~AV~aa~eNa~--- 206 (300)
T COG2264 161 KKGKTVLDVGCGSGILA-------------IAAAK-----L-------------GAKKVVGVDIDPQAVEAARENAR--- 206 (300)
T ss_pred cCCCEEEEecCChhHHH-------------HHHHH-----c-------------CCceEEEecCCHHHHHHHHHHHH---
Confidence 37889999999999988 44433 0 24569999999999999999998
Q ss_pred CccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHHHHHHhccCCcEE
Q psy1420 122 IESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRF 201 (241)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l 201 (241)
.++++. .......+....+ ..++||+|+++- +. .-.......+.+.+||||++
T Consensus 207 ----------------------~N~v~~-~~~~~~~~~~~~~-~~~~~DvIVANI-LA--~vl~~La~~~~~~lkpgg~l 259 (300)
T COG2264 207 ----------------------LNGVEL-LVQAKGFLLLEVP-ENGPFDVIVANI-LA--EVLVELAPDIKRLLKPGGRL 259 (300)
T ss_pred ----------------------HcCCch-hhhcccccchhhc-ccCcccEEEehh-hH--HHHHHHHHHHHHHcCCCceE
Confidence 555551 1222222222222 235899999754 21 22347888999999999999
Q ss_pred EEEecCH---HHHHHHHHHCCCceEEEEEecCc
Q psy1420 202 LCLEFSH---EEFKSMIESAGFQYVTYENLTFG 231 (241)
Q Consensus 202 ~i~~~~~---~~~~~~l~~~Gf~~~~~~~~~~~ 231 (241)
+++-.-. +.+.+.+.++||.+++.......
T Consensus 260 IlSGIl~~q~~~V~~a~~~~gf~v~~~~~~~eW 292 (300)
T COG2264 260 ILSGILEDQAESVAEAYEQAGFEVVEVLEREEW 292 (300)
T ss_pred EEEeehHhHHHHHHHHHHhCCCeEeEEEecCCE
Confidence 9876444 78888899999999888766433
No 103
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.09 E-value=2.1e-10 Score=87.68 Aligned_cols=105 Identities=17% Similarity=0.285 Sum_probs=80.1
Q ss_pred CCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCCc
Q psy1420 44 DTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIE 123 (241)
Q Consensus 44 ~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~ 123 (241)
|.+|||+|||+|..+ ..++. . ...+++++|+++..++.++.++.
T Consensus 1 g~~vlD~~~G~G~~~-------------~~~~~----~--------------~~~~~~gvdi~~~~~~~a~~~~~----- 44 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFL-------------LAALR----R--------------GAARVTGVDIDPEAVELARRNLP----- 44 (117)
T ss_dssp TEEEEEETSTTCHHH-------------HHHHH----H--------------CTCEEEEEESSHHHHHHHHHHCH-----
T ss_pred CCEEEEcCcchHHHH-------------HHHHH----H--------------CCCeEEEEEECHHHHHHHHHHHH-----
Confidence 468999999999988 44433 0 13689999999999999999888
Q ss_pred cccccccceecceeeeeeccccCCCCCCeeEEecccCCCC--CCCCceeEEeeeehhhcc--------ccHHHHHHHHHH
Q psy1420 124 SDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELP--IESDSYSAYTIAFGIRNV--------TRIDKALSEAYR 193 (241)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~D~V~~~~~l~~~--------~~~~~~l~~~~~ 193 (241)
..+.. ++++++++|+.... .+..+||+|+++--.... .....+++.+.+
T Consensus 45 --------------------~~~~~-~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~~~~~~~~~~~~~~~~~~~~~~~~ 103 (117)
T PF13659_consen 45 --------------------RNGLD-DRVEVIVGDARDLPEPLPDGKFDLIVTNPPYGPRSGDKAALRRLYSRFLEAAAR 103 (117)
T ss_dssp --------------------HCTTT-TTEEEEESHHHHHHHTCTTT-EEEEEE--STTSBTT----GGCHHHHHHHHHHH
T ss_pred --------------------HccCC-ceEEEEECchhhchhhccCceeEEEEECCCCccccccchhhHHHHHHHHHHHHH
Confidence 55544 57999999988765 667899999997554422 134688999999
Q ss_pred hccCCcEEEEEe
Q psy1420 194 VLKPGGRFLCLE 205 (241)
Q Consensus 194 ~LkpgG~l~i~~ 205 (241)
+|||||.++++.
T Consensus 104 ~L~~gG~~~~~~ 115 (117)
T PF13659_consen 104 LLKPGGVLVFIT 115 (117)
T ss_dssp HEEEEEEEEEEE
T ss_pred HcCCCeEEEEEe
Confidence 999999998764
No 104
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.09 E-value=1.7e-09 Score=101.64 Aligned_cols=134 Identities=16% Similarity=0.261 Sum_probs=97.6
Q ss_pred HHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHH
Q psy1420 34 IFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFL 113 (241)
Q Consensus 34 ~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~ 113 (241)
.+...+.+.++.+|||+|||+|..+ ..++..++ ....++++|+++.+++.+
T Consensus 243 l~~~~l~~~~g~~VLDl~ag~G~kt-------------~~la~~~~----------------~~g~v~a~D~~~~rl~~~ 293 (434)
T PRK14901 243 LVAPLLDPQPGEVILDACAAPGGKT-------------THIAELMG----------------DQGEIWAVDRSASRLKKL 293 (434)
T ss_pred HHHHHhCCCCcCEEEEeCCCCchhH-------------HHHHHHhC----------------CCceEEEEcCCHHHHHHH
Confidence 3444567788999999999999988 44444111 245899999999999999
Q ss_pred HHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCC----CCCCceeEEeee------ehhhcccc
Q psy1420 114 EANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELP----IESDSYSAYTIA------FGIRNVTR 183 (241)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~~D~V~~~------~~l~~~~~ 183 (241)
++++. +.++. ++++++.|+...+ ...++||.|++. .+++..++
T Consensus 294 ~~n~~-------------------------r~g~~--~v~~~~~D~~~~~~~~~~~~~~fD~Vl~DaPCSg~G~~~r~p~ 346 (434)
T PRK14901 294 QENAQ-------------------------RLGLK--SIKILAADSRNLLELKPQWRGYFDRILLDAPCSGLGTLHRHPD 346 (434)
T ss_pred HHHHH-------------------------HcCCC--eEEEEeCChhhcccccccccccCCEEEEeCCCCcccccccCcc
Confidence 99998 66665 5888899988765 335689999963 22332222
Q ss_pred ----------------HHHHHHHHHHhccCCcEEEEEecCH------HHHHHHHHHC-CCceE
Q psy1420 184 ----------------IDKALSEAYRVLKPGGRFLCLEFSH------EEFKSMIESA-GFQYV 223 (241)
Q Consensus 184 ----------------~~~~l~~~~~~LkpgG~l~i~~~~~------~~~~~~l~~~-Gf~~~ 223 (241)
..+.|+++.++|||||+|+.++.+. +.+...+++. +|.+.
T Consensus 347 ~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~~Ene~~v~~~l~~~~~~~~~ 409 (434)
T PRK14901 347 ARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHPAENEAQIEQFLARHPDWKLE 409 (434)
T ss_pred hhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHHHhCCCcEec
Confidence 3578999999999999998766443 5566777776 47654
No 105
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=99.08 E-value=1.2e-09 Score=95.34 Aligned_cols=119 Identities=19% Similarity=0.311 Sum_probs=92.4
Q ss_pred CCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCC
Q psy1420 43 HDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPI 122 (241)
Q Consensus 43 ~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~ 122 (241)
...++||+|+|.|..+ .++.+ ...+++++|.|+.|.....++-
T Consensus 94 ~~~~lLDlGAGdG~VT-------------~~l~~-------------------~f~~v~aTE~S~~Mr~rL~~kg----- 136 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVT-------------ERLAP-------------------LFKEVYATEASPPMRWRLSKKG----- 136 (265)
T ss_pred cCCceEEecCCCcHHH-------------HHHHh-------------------hcceEEeecCCHHHHHHHHhCC-----
Confidence 4568999999999999 77777 4667999999999988776542
Q ss_pred ccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHHHHHHhccCCcEEE
Q psy1420 123 ESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFL 202 (241)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~ 202 (241)
.+++..+ +..-.+.+||+|.|.+++..-.+|...|+.+++.|+|+|+++
T Consensus 137 -----------------------------~~vl~~~--~w~~~~~~fDvIscLNvLDRc~~P~~LL~~i~~~l~p~G~li 185 (265)
T PF05219_consen 137 -----------------------------FTVLDID--DWQQTDFKFDVISCLNVLDRCDRPLTLLRDIRRALKPNGRLI 185 (265)
T ss_pred -----------------------------CeEEehh--hhhccCCceEEEeehhhhhccCCHHHHHHHHHHHhCCCCEEE
Confidence 2222222 122224589999999999999999999999999999999988
Q ss_pred EEe---------cCH---------------------HHHHHHHHHCCCceEEEEEec
Q psy1420 203 CLE---------FSH---------------------EEFKSMIESAGFQYVTYENLT 229 (241)
Q Consensus 203 i~~---------~~~---------------------~~~~~~l~~~Gf~~~~~~~~~ 229 (241)
+.- .+. ..+.+.++.+||+++...+..
T Consensus 186 lAvVlP~~pyVE~~~g~~~~P~e~l~~~g~~~E~~v~~l~~v~~p~GF~v~~~tr~P 242 (265)
T PF05219_consen 186 LAVVLPFRPYVEFGGGKSNRPSELLPVKGATFEEQVSSLVNVFEPAGFEVERWTRLP 242 (265)
T ss_pred EEEEecccccEEcCCCCCCCchhhcCCCCCcHHHHHHHHHHHHHhcCCEEEEEeccC
Confidence 743 211 444589999999999998875
No 106
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.08 E-value=2.8e-10 Score=97.15 Aligned_cols=113 Identities=16% Similarity=0.230 Sum_probs=80.9
Q ss_pred HHHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHh
Q psy1420 30 LWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPR 109 (241)
Q Consensus 30 ~~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~ 109 (241)
.....+++.+..+|+.+|||+|||+|+.+.++ .. +. + ....++++|..+..
T Consensus 59 ~~~a~~l~~L~l~pg~~VLeIGtGsGY~aAll-------------a~----lv-g-----------~~g~Vv~vE~~~~l 109 (209)
T PF01135_consen 59 SMVARMLEALDLKPGDRVLEIGTGSGYQAALL-------------AH----LV-G-----------PVGRVVSVERDPEL 109 (209)
T ss_dssp HHHHHHHHHTTC-TT-EEEEES-TTSHHHHHH-------------HH----HH-S-----------TTEEEEEEESBHHH
T ss_pred HHHHHHHHHHhcCCCCEEEEecCCCcHHHHHH-------------HH----hc-C-----------ccceEEEECccHHH
Confidence 44677888889999999999999999999322 22 11 1 34578999999999
Q ss_pred HHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHH
Q psy1420 110 LRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALS 189 (241)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~ 189 (241)
.+.+++++. ..+.. ++.+..+|...--....+||.|++......++ .
T Consensus 110 ~~~A~~~l~-------------------------~~~~~--nv~~~~gdg~~g~~~~apfD~I~v~~a~~~ip------~ 156 (209)
T PF01135_consen 110 AERARRNLA-------------------------RLGID--NVEVVVGDGSEGWPEEAPFDRIIVTAAVPEIP------E 156 (209)
T ss_dssp HHHHHHHHH-------------------------HHTTH--SEEEEES-GGGTTGGG-SEEEEEESSBBSS--------H
T ss_pred HHHHHHHHH-------------------------HhccC--ceeEEEcchhhccccCCCcCEEEEeeccchHH------H
Confidence 999999988 55544 78899999765433356899999987775443 3
Q ss_pred HHHHhccCCcEEEEE
Q psy1420 190 EAYRVLKPGGRFLCL 204 (241)
Q Consensus 190 ~~~~~LkpgG~l~i~ 204 (241)
.+.+.|++||+|++-
T Consensus 157 ~l~~qL~~gGrLV~p 171 (209)
T PF01135_consen 157 ALLEQLKPGGRLVAP 171 (209)
T ss_dssp HHHHTEEEEEEEEEE
T ss_pred HHHHhcCCCcEEEEE
Confidence 367779999999874
No 107
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.06 E-value=2.9e-09 Score=92.75 Aligned_cols=135 Identities=16% Similarity=0.246 Sum_probs=102.4
Q ss_pred hcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHH
Q psy1420 38 RLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANA 117 (241)
Q Consensus 38 ~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~ 117 (241)
+.......+|||+|||+|..+ . +++++. ...++.++|+.+.+.+.|+++.
T Consensus 39 ~~~~~~~~~IlDlGaG~G~l~-------------L--------~la~r~---------~~a~I~~VEiq~~~a~~A~~nv 88 (248)
T COG4123 39 FAPVPKKGRILDLGAGNGALG-------------L--------LLAQRT---------EKAKIVGVEIQEEAAEMAQRNV 88 (248)
T ss_pred hcccccCCeEEEecCCcCHHH-------------H--------HHhccC---------CCCcEEEEEeCHHHHHHHHHHH
Confidence 344455779999999999877 1 222331 3489999999999999999998
Q ss_pred hcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCC--CCCCceeEEeeeehhh----------------
Q psy1420 118 EELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELP--IESDSYSAYTIAFGIR---------------- 179 (241)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~D~V~~~~~l~---------------- 179 (241)
. -+++. +++++++.|+.... ....+||+|+|+--..
T Consensus 89 ~-------------------------ln~l~-~ri~v~~~Di~~~~~~~~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar 142 (248)
T COG4123 89 A-------------------------LNPLE-ERIQVIEADIKEFLKALVFASFDLIICNPPYFKQGSRLNENPLRAIAR 142 (248)
T ss_pred H-------------------------hCcch-hceeEehhhHHHhhhcccccccCEEEeCCCCCCCccccCcChhhhhhh
Confidence 8 55555 68999999998874 3345799999873221
Q ss_pred c--cccHHHHHHHHHHhccCCcEEEEEecCH--HHHHHHHHHCCCceEEEEEe
Q psy1420 180 N--VTRIDKALSEAYRVLKPGGRFLCLEFSH--EEFKSMIESAGFQYVTYENL 228 (241)
Q Consensus 180 ~--~~~~~~~l~~~~~~LkpgG~l~i~~~~~--~~~~~~l~~~Gf~~~~~~~~ 228 (241)
| ..+.+..++.+.++|||||.+.++-... .++.+++.+.+|...++.-+
T Consensus 143 ~e~~~~le~~i~~a~~~lk~~G~l~~V~r~erl~ei~~~l~~~~~~~k~i~~V 195 (248)
T COG4123 143 HEITLDLEDLIRAAAKLLKPGGRLAFVHRPERLAEIIELLKSYNLEPKRIQFV 195 (248)
T ss_pred hhhcCCHHHHHHHHHHHccCCCEEEEEecHHHHHHHHHHHHhcCCCceEEEEe
Confidence 1 1135789999999999999998865443 77889999999988777655
No 108
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.05 E-value=2.6e-09 Score=92.77 Aligned_cols=131 Identities=17% Similarity=0.235 Sum_probs=105.2
Q ss_pred HHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHH
Q psy1420 33 DIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRF 112 (241)
Q Consensus 33 ~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~ 112 (241)
..+...++..|+.+|+|.|.|+|.++ ..++..+| +..+++..|+.+...+.
T Consensus 84 ~~I~~~~gi~pg~rVlEAGtGSG~lt-------------~~La~~vg----------------~~G~v~tyE~r~d~~k~ 134 (256)
T COG2519 84 GYIVARLGISPGSRVLEAGTGSGALT-------------AYLARAVG----------------PEGHVTTYEIREDFAKT 134 (256)
T ss_pred HHHHHHcCCCCCCEEEEcccCchHHH-------------HHHHHhhC----------------CCceEEEEEecHHHHHH
Confidence 45667778899999999999999998 44443222 46789999999999999
Q ss_pred HHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHHHHH
Q psy1420 113 LEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAY 192 (241)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~~~ 192 (241)
|++++. ..++. +++.+...|+.+...+. .||+|+. .+++|..++..++
T Consensus 135 A~~Nl~-------------------------~~~l~-d~v~~~~~Dv~~~~~~~-~vDav~L-----Dmp~PW~~le~~~ 182 (256)
T COG2519 135 ARENLS-------------------------EFGLG-DRVTLKLGDVREGIDEE-DVDAVFL-----DLPDPWNVLEHVS 182 (256)
T ss_pred HHHHHH-------------------------Hhccc-cceEEEecccccccccc-ccCEEEE-----cCCChHHHHHHHH
Confidence 999998 66666 45888889988875544 8999984 6799999999999
Q ss_pred HhccCCcEEEEEecCH---HHHHHHHHHCCCceEE
Q psy1420 193 RVLKPGGRFLCLEFSH---EEFKSMIESAGFQYVT 224 (241)
Q Consensus 193 ~~LkpgG~l~i~~~~~---~~~~~~l~~~Gf~~~~ 224 (241)
+.|||||.+++..... +...+.+++.||...+
T Consensus 183 ~~Lkpgg~~~~y~P~veQv~kt~~~l~~~g~~~ie 217 (256)
T COG2519 183 DALKPGGVVVVYSPTVEQVEKTVEALRERGFVDIE 217 (256)
T ss_pred HHhCCCcEEEEEcCCHHHHHHHHHHHHhcCccchh
Confidence 9999999999877666 4455666777886543
No 109
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.04 E-value=3e-09 Score=95.17 Aligned_cols=123 Identities=19% Similarity=0.224 Sum_probs=86.5
Q ss_pred CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCC
Q psy1420 42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP 121 (241)
Q Consensus 42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~ 121 (241)
.++.+|||+|||+|-++ +..+. + ...+++++|+++.+++.++.++.
T Consensus 160 ~~g~~vLDvG~GSGILa-------------iaA~k-----l-------------GA~~v~a~DiDp~Av~~a~~N~~--- 205 (295)
T PF06325_consen 160 KPGKRVLDVGCGSGILA-------------IAAAK-----L-------------GAKKVVAIDIDPLAVEAARENAE--- 205 (295)
T ss_dssp STTSEEEEES-TTSHHH-------------HHHHH-----T-------------TBSEEEEEESSCHHHHHHHHHHH---
T ss_pred cCCCEEEEeCCcHHHHH-------------HHHHH-----c-------------CCCeEEEecCCHHHHHHHHHHHH---
Confidence 56779999999999988 33332 1 24579999999999999999998
Q ss_pred CccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHHHHHHhccCCcEE
Q psy1420 122 IESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRF 201 (241)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l 201 (241)
.+++. .++.+. .... ....+||+|+++-... -....+..+.++|+|||++
T Consensus 206 ----------------------~N~~~-~~~~v~--~~~~--~~~~~~dlvvANI~~~---vL~~l~~~~~~~l~~~G~l 255 (295)
T PF06325_consen 206 ----------------------LNGVE-DRIEVS--LSED--LVEGKFDLVVANILAD---VLLELAPDIASLLKPGGYL 255 (295)
T ss_dssp ----------------------HTT-T-TCEEES--CTSC--TCCS-EEEEEEES-HH---HHHHHHHHCHHHEEEEEEE
T ss_pred ----------------------HcCCC-eeEEEE--Eecc--cccccCCEEEECCCHH---HHHHHHHHHHHhhCCCCEE
Confidence 66766 345442 2222 2247899999764432 2346777788999999999
Q ss_pred EEEecCH---HHHHHHHHHCCCceEEEEEec
Q psy1420 202 LCLEFSH---EEFKSMIESAGFQYVTYENLT 229 (241)
Q Consensus 202 ~i~~~~~---~~~~~~l~~~Gf~~~~~~~~~ 229 (241)
+++-.-. +.+.+.+++ ||.+++.....
T Consensus 256 IlSGIl~~~~~~v~~a~~~-g~~~~~~~~~~ 285 (295)
T PF06325_consen 256 ILSGILEEQEDEVIEAYKQ-GFELVEEREEG 285 (295)
T ss_dssp EEEEEEGGGHHHHHHHHHT-TEEEEEEEEET
T ss_pred EEccccHHHHHHHHHHHHC-CCEEEEEEEEC
Confidence 9875444 778888876 99987777553
No 110
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=99.04 E-value=9.9e-10 Score=93.03 Aligned_cols=75 Identities=24% Similarity=0.408 Sum_probs=56.7
Q ss_pred eEEecccCCCCCCCCceeEEeeeehhhccccHHHHHHHHHHhccCCcEEEEEecCH-----HHHHHHHHHCCCceEEEEE
Q psy1420 153 RFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH-----EEFKSMIESAGFQYVTYEN 227 (241)
Q Consensus 153 ~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~-----~~~~~~l~~~Gf~~~~~~~ 227 (241)
.+..+|+..+|++++++|+++++.+|. -++....+.|+.|+|||||.|.+.+... +.+.+.+++.||.......
T Consensus 107 ~Vtacdia~vPL~~~svDv~VfcLSLM-GTn~~~fi~EA~RvLK~~G~L~IAEV~SRf~~~~~F~~~~~~~GF~~~~~d~ 185 (219)
T PF05148_consen 107 RVTACDIANVPLEDESVDVAVFCLSLM-GTNWPDFIREANRVLKPGGILKIAEVKSRFENVKQFIKALKKLGFKLKSKDE 185 (219)
T ss_dssp TEEES-TTS-S--TT-EEEEEEES----SS-HHHHHHHHHHHEEEEEEEEEEEEGGG-S-HHHHHHHHHCTTEEEEEEE-
T ss_pred CEEEecCccCcCCCCceeEEEEEhhhh-CCCcHHHHHHHHheeccCcEEEEEEecccCcCHHHHHHHHHHCCCeEEeccc
Confidence 467899999999999999999998885 4678899999999999999999988554 8889999999999887654
Q ss_pred e
Q psy1420 228 L 228 (241)
Q Consensus 228 ~ 228 (241)
.
T Consensus 186 ~ 186 (219)
T PF05148_consen 186 S 186 (219)
T ss_dssp -
T ss_pred C
Confidence 4
No 111
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.02 E-value=1.5e-09 Score=98.37 Aligned_cols=113 Identities=17% Similarity=0.293 Sum_probs=82.8
Q ss_pred HHHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHh
Q psy1420 30 LWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPR 109 (241)
Q Consensus 30 ~~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~ 109 (241)
.....+++.+..+++.+|||+|||+|..+ ..++. ... ....++++|+++.+
T Consensus 67 ~l~a~ll~~L~i~~g~~VLDIG~GtG~~a-------------~~LA~----~~~------------~~g~VvgVDis~~~ 117 (322)
T PRK13943 67 SLMALFMEWVGLDKGMRVLEIGGGTGYNA-------------AVMSR----VVG------------EKGLVVSVEYSRKI 117 (322)
T ss_pred HHHHHHHHhcCCCCCCEEEEEeCCccHHH-------------HHHHH----hcC------------CCCEEEEEECCHHH
Confidence 34456667777788889999999999988 33332 100 12469999999999
Q ss_pred HHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHH
Q psy1420 110 LRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALS 189 (241)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~ 189 (241)
++.+++++. +.++. ++.++++|+...+....+||+|++..++.+++ .
T Consensus 118 l~~Ar~~l~-------------------------~~g~~--nV~~i~gD~~~~~~~~~~fD~Ii~~~g~~~ip------~ 164 (322)
T PRK13943 118 CEIAKRNVR-------------------------RLGIE--NVIFVCGDGYYGVPEFAPYDVIFVTVGVDEVP------E 164 (322)
T ss_pred HHHHHHHHH-------------------------HcCCC--cEEEEeCChhhcccccCCccEEEECCchHHhH------H
Confidence 999998887 44543 57888888766544446799999987766543 3
Q ss_pred HHHHhccCCcEEEEE
Q psy1420 190 EAYRVLKPGGRFLCL 204 (241)
Q Consensus 190 ~~~~~LkpgG~l~i~ 204 (241)
.+.+.|+|||++++.
T Consensus 165 ~~~~~LkpgG~Lvv~ 179 (322)
T PRK13943 165 TWFTQLKEGGRVIVP 179 (322)
T ss_pred HHHHhcCCCCEEEEE
Confidence 467889999998874
No 112
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.02 E-value=2.7e-09 Score=77.25 Aligned_cols=101 Identities=27% Similarity=0.401 Sum_probs=77.8
Q ss_pred eEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCCccc
Q psy1420 46 KLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIESD 125 (241)
Q Consensus 46 ~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~ 125 (241)
+++|+|||+|..+ ..++. .....++++|+++.++..+++...
T Consensus 1 ~ildig~G~G~~~-------------~~~~~------------------~~~~~~~~~d~~~~~~~~~~~~~~------- 42 (107)
T cd02440 1 RVLDLGCGTGALA-------------LALAS------------------GPGARVTGVDISPVALELARKAAA------- 42 (107)
T ss_pred CeEEEcCCccHHH-------------HHHhc------------------CCCCEEEEEeCCHHHHHHHHHHHh-------
Confidence 4899999999887 33322 135689999999999988875333
Q ss_pred cccccceecceeeeeeccccCCCCCCeeEEecccCCCCC-CCCceeEEeeeehhhc-cccHHHHHHHHHHhccCCcEEEE
Q psy1420 126 SYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPI-ESDSYSAYTIAFGIRN-VTRIDKALSEAYRVLKPGGRFLC 203 (241)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~D~V~~~~~l~~-~~~~~~~l~~~~~~LkpgG~l~i 203 (241)
... ..++++...|+..... ...++|+|++...+++ .......++.+.+.++|||.+++
T Consensus 43 ------------------~~~--~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~ 102 (107)
T cd02440 43 ------------------ALL--ADNVEVLKGDAEELPPEADESFDVIISDPPLHHLVEDLARFLEEARRLLKPGGVLVL 102 (107)
T ss_pred ------------------ccc--ccceEEEEcChhhhccccCCceEEEEEccceeehhhHHHHHHHHHHHHcCCCCEEEE
Confidence 111 1357788888777653 4568999999999888 77889999999999999999987
Q ss_pred E
Q psy1420 204 L 204 (241)
Q Consensus 204 ~ 204 (241)
.
T Consensus 103 ~ 103 (107)
T cd02440 103 T 103 (107)
T ss_pred E
Confidence 4
No 113
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=2.4e-09 Score=90.85 Aligned_cols=110 Identities=15% Similarity=0.141 Sum_probs=86.6
Q ss_pred HHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhH
Q psy1420 31 WKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRL 110 (241)
Q Consensus 31 ~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~ 110 (241)
....|++.+.++++.+|||||||+|+.+ .-+.. ...+++.+|..+...
T Consensus 60 ~vA~m~~~L~~~~g~~VLEIGtGsGY~a-------------Avla~-------------------l~~~V~siEr~~~L~ 107 (209)
T COG2518 60 MVARMLQLLELKPGDRVLEIGTGSGYQA-------------AVLAR-------------------LVGRVVSIERIEELA 107 (209)
T ss_pred HHHHHHHHhCCCCCCeEEEECCCchHHH-------------HHHHH-------------------HhCeEEEEEEcHHHH
Confidence 4577889999999999999999999998 22222 234899999999999
Q ss_pred HHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHHH
Q psy1420 111 RFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSE 190 (241)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~ 190 (241)
+.|++++. ..+.. ++.+.++|...==.+..+||.|++......+|. .
T Consensus 108 ~~A~~~L~-------------------------~lg~~--nV~v~~gDG~~G~~~~aPyD~I~Vtaaa~~vP~------~ 154 (209)
T COG2518 108 EQARRNLE-------------------------TLGYE--NVTVRHGDGSKGWPEEAPYDRIIVTAAAPEVPE------A 154 (209)
T ss_pred HHHHHHHH-------------------------HcCCC--ceEEEECCcccCCCCCCCcCEEEEeeccCCCCH------H
Confidence 99999998 66765 589999997653223478999998887766553 3
Q ss_pred HHHhccCCcEEEEEe
Q psy1420 191 AYRVLKPGGRFLCLE 205 (241)
Q Consensus 191 ~~~~LkpgG~l~i~~ 205 (241)
+.+.|||||++++-.
T Consensus 155 Ll~QL~~gGrlv~Pv 169 (209)
T COG2518 155 LLDQLKPGGRLVIPV 169 (209)
T ss_pred HHHhcccCCEEEEEE
Confidence 566789999998854
No 114
>KOG3010|consensus
Probab=99.02 E-value=1.5e-09 Score=93.49 Aligned_cols=103 Identities=17% Similarity=0.164 Sum_probs=72.0
Q ss_pred eEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCCccc
Q psy1420 46 KLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIESD 125 (241)
Q Consensus 46 ~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~ 125 (241)
.++|+|||+|..+ +-+.+ ...+++++|+|+.|++.+.+....
T Consensus 36 ~a~DvG~G~Gqa~-------------~~iae-------------------~~k~VIatD~s~~mL~~a~k~~~~------ 77 (261)
T KOG3010|consen 36 LAWDVGTGNGQAA-------------RGIAE-------------------HYKEVIATDVSEAMLKVAKKHPPV------ 77 (261)
T ss_pred eEEEeccCCCcch-------------HHHHH-------------------hhhhheeecCCHHHHHHhhcCCCc------
Confidence 7999999999766 44444 456899999999999988765330
Q ss_pred cccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHHHHHHhccCCc-EEEEE
Q psy1420 126 SYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGG-RFLCL 204 (241)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG-~l~i~ 204 (241)
...+. ..+....+...+-..++++|+|+|..++|++ +.+++.++++|+||++| .+++.
T Consensus 78 -----------------~y~~t---~~~ms~~~~v~L~g~e~SVDlI~~Aqa~HWF-dle~fy~~~~rvLRk~Gg~iavW 136 (261)
T KOG3010|consen 78 -----------------TYCHT---PSTMSSDEMVDLLGGEESVDLITAAQAVHWF-DLERFYKEAYRVLRKDGGLIAVW 136 (261)
T ss_pred -----------------ccccC---CccccccccccccCCCcceeeehhhhhHHhh-chHHHHHHHHHHcCCCCCEEEEE
Confidence 00011 1222233333333337899999999999877 67889999999998866 77776
Q ss_pred ecC
Q psy1420 205 EFS 207 (241)
Q Consensus 205 ~~~ 207 (241)
...
T Consensus 137 ~Y~ 139 (261)
T KOG3010|consen 137 NYN 139 (261)
T ss_pred Ecc
Confidence 554
No 115
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=98.98 E-value=5.6e-09 Score=98.50 Aligned_cols=132 Identities=17% Similarity=0.234 Sum_probs=93.7
Q ss_pred HHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHH
Q psy1420 35 FIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLE 114 (241)
Q Consensus 35 ~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~ 114 (241)
....+.+.++.+|||+|||+|..+ ..++. .+. ....++++|+++.+++.++
T Consensus 242 ~~~~l~~~~g~~VLDlgaG~G~kt-------------~~la~----~~~------------~~~~V~avD~s~~~l~~~~ 292 (445)
T PRK14904 242 ACLLLNPQPGSTVLDLCAAPGGKS-------------TFMAE----LMQ------------NRGQITAVDRYPQKLEKIR 292 (445)
T ss_pred HHHhcCCCCCCEEEEECCCCCHHH-------------HHHHH----HhC------------CCcEEEEEECCHHHHHHHH
Confidence 334556678889999999999987 33333 110 2458999999999999999
Q ss_pred HHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeee-----eh-hhccc------
Q psy1420 115 ANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIA-----FG-IRNVT------ 182 (241)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~-----~~-l~~~~------ 182 (241)
+++. +.++. ++++.+.|+...+ +..+||+|++. .+ +...+
T Consensus 293 ~~~~-------------------------~~g~~--~v~~~~~Da~~~~-~~~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~ 344 (445)
T PRK14904 293 SHAS-------------------------ALGIT--IIETIEGDARSFS-PEEQPDAILLDAPCTGTGVLGRRAELRWKL 344 (445)
T ss_pred HHHH-------------------------HhCCC--eEEEEeCcccccc-cCCCCCEEEEcCCCCCcchhhcCcchhhcC
Confidence 9988 55554 5888899987764 34689999952 11 11111
Q ss_pred ----------cHHHHHHHHHHhccCCcEEEEEecCH------HHHHHHHHHC-CCceE
Q psy1420 183 ----------RIDKALSEAYRVLKPGGRFLCLEFSH------EEFKSMIESA-GFQYV 223 (241)
Q Consensus 183 ----------~~~~~l~~~~~~LkpgG~l~i~~~~~------~~~~~~l~~~-Gf~~~ 223 (241)
...++|.++.+.|||||+++..+.+. +.+..++++. +|...
T Consensus 345 ~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~~~Ene~~v~~~l~~~~~~~~~ 402 (445)
T PRK14904 345 TPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIEPEENELQIEAFLQRHPEFSAE 402 (445)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhHHHHHHHHHHhCCCCEEe
Confidence 12368999999999999999987555 4456777766 46644
No 116
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.98 E-value=6.7e-09 Score=97.42 Aligned_cols=133 Identities=17% Similarity=0.280 Sum_probs=93.5
Q ss_pred HHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHH
Q psy1420 33 DIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRF 112 (241)
Q Consensus 33 ~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~ 112 (241)
..+...+++.++.+|||+|||+|..+ ..++. .+ ...+++++|+++.+++.
T Consensus 228 ~~~~~~L~~~~g~~VLDlcag~G~kt-------------~~la~----~~-------------~~~~v~a~D~~~~~l~~ 277 (426)
T TIGR00563 228 QWVATWLAPQNEETILDACAAPGGKT-------------THILE----LA-------------PQAQVVALDIHEHRLKR 277 (426)
T ss_pred HHHHHHhCCCCCCeEEEeCCCccHHH-------------HHHHH----Hc-------------CCCeEEEEeCCHHHHHH
Confidence 44555677888999999999999988 44443 11 13579999999999999
Q ss_pred HHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCC--CCCceeEEeee------ehhhcccc-
Q psy1420 113 LEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPI--ESDSYSAYTIA------FGIRNVTR- 183 (241)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~~D~V~~~------~~l~~~~~- 183 (241)
+++++. +.++. ..+.+..+|....+. +..+||.|++. ..++..++
T Consensus 278 ~~~n~~-------------------------r~g~~-~~v~~~~~d~~~~~~~~~~~~fD~VllDaPcSg~G~~~~~p~~ 331 (426)
T TIGR00563 278 VYENLK-------------------------RLGLT-IKAETKDGDGRGPSQWAENEQFDRILLDAPCSATGVIRRHPDI 331 (426)
T ss_pred HHHHHH-------------------------HcCCC-eEEEEeccccccccccccccccCEEEEcCCCCCCcccccCcch
Confidence 999988 55544 234445666554432 35679999852 23443333
Q ss_pred ---------------HHHHHHHHHHhccCCcEEEEEecCH------HHHHHHHHHCC-Cc
Q psy1420 184 ---------------IDKALSEAYRVLKPGGRFLCLEFSH------EEFKSMIESAG-FQ 221 (241)
Q Consensus 184 ---------------~~~~l~~~~~~LkpgG~l~i~~~~~------~~~~~~l~~~G-f~ 221 (241)
..++|+++.++|||||+|+.++.+. ..+...+++.+ |.
T Consensus 332 ~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~~Ene~~v~~~l~~~~~~~ 391 (426)
T TIGR00563 332 KWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVLPEENSEQIKAFLQEHPDFP 391 (426)
T ss_pred hhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhCHHHHHHHHHhCCCCe
Confidence 2579999999999999999876555 55566777663 54
No 117
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=98.98 E-value=3.9e-09 Score=88.05 Aligned_cols=122 Identities=16% Similarity=0.196 Sum_probs=78.3
Q ss_pred hcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHH
Q psy1420 38 RLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANA 117 (241)
Q Consensus 38 ~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~ 117 (241)
.....++.+|||+|||+|..+ ..++. ... ....++++|+++.+ ..
T Consensus 27 ~~~i~~g~~VLDiG~GtG~~~-------------~~l~~----~~~------------~~~~v~~vDis~~~------~~ 71 (188)
T TIGR00438 27 FKLIKPGDTVLDLGAAPGGWS-------------QVAVE----QVG------------GKGRVIAVDLQPMK------PI 71 (188)
T ss_pred hcccCCCCEEEEecCCCCHHH-------------HHHHH----HhC------------CCceEEEEeccccc------cC
Confidence 334477889999999999988 33333 100 23479999999854 11
Q ss_pred hcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCC--------CCCCceeEEeeeehhh-----cc---
Q psy1420 118 EELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELP--------IESDSYSAYTIAFGIR-----NV--- 181 (241)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--------~~~~~~D~V~~~~~l~-----~~--- 181 (241)
+++.+.+.|+.+.+ .+.++||+|++....+ ..
T Consensus 72 --------------------------------~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V~~~~~~~~~g~~~~~~~ 119 (188)
T TIGR00438 72 --------------------------------ENVDFIRGDFTDEEVLNKIRERVGDDKVDVVMSDAAPNISGYWDIDHL 119 (188)
T ss_pred --------------------------------CCceEEEeeCCChhHHHHHHHHhCCCCccEEEcCCCCCCCCCccccHH
Confidence 13566777766532 3356799999854311 11
Q ss_pred ---ccHHHHHHHHHHhccCCcEEEEEecCHHHHHHHHHH--CCCceEEEE
Q psy1420 182 ---TRIDKALSEAYRVLKPGGRFLCLEFSHEEFKSMIES--AGFQYVTYE 226 (241)
Q Consensus 182 ---~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~l~~--~Gf~~~~~~ 226 (241)
.+...+++.+.++|+|||++++..+....+.+++.. .+|..+++.
T Consensus 120 ~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~~~~~~~l~~l~~~~~~~~~~ 169 (188)
T TIGR00438 120 RSIDLVELALDIAKEVLKPKGNFVVKVFQGEEIDEYLNELRKLFEKVKVT 169 (188)
T ss_pred HHHHHHHHHHHHHHHHccCCCEEEEEEccCccHHHHHHHHHhhhceEEEe
Confidence 124689999999999999999876665444444443 246544443
No 118
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.97 E-value=5.8e-09 Score=90.19 Aligned_cols=108 Identities=21% Similarity=0.332 Sum_probs=81.9
Q ss_pred HHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHH
Q psy1420 33 DIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRF 112 (241)
Q Consensus 33 ~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~ 112 (241)
..+.......+..+|+|||+|+|.++ ..++. . .+..+++..|. |..++.
T Consensus 90 ~~~~~~~d~~~~~~vvDvGGG~G~~~-------------~~l~~-------~----------~P~l~~~v~Dl-p~v~~~ 138 (241)
T PF00891_consen 90 DILLEAFDFSGFKTVVDVGGGSGHFA-------------IALAR-------A----------YPNLRATVFDL-PEVIEQ 138 (241)
T ss_dssp HHHHHHSTTTTSSEEEEET-TTSHHH-------------HHHHH-------H----------STTSEEEEEE--HHHHCC
T ss_pred hhhhccccccCccEEEeccCcchHHH-------------HHHHH-------H----------CCCCcceeecc-Hhhhhc
Confidence 45566667777779999999999988 44443 1 24667889997 566666
Q ss_pred HHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccH--HHHHHH
Q psy1420 113 LEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRI--DKALSE 190 (241)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~--~~~l~~ 190 (241)
+.+ . +++++..+|+. .+++. +|+|+...++|++++. .++|++
T Consensus 139 ~~~--~-------------------------------~rv~~~~gd~f-~~~P~--~D~~~l~~vLh~~~d~~~~~iL~~ 182 (241)
T PF00891_consen 139 AKE--A-------------------------------DRVEFVPGDFF-DPLPV--ADVYLLRHVLHDWSDEDCVKILRN 182 (241)
T ss_dssp HHH--T-------------------------------TTEEEEES-TT-TCCSS--ESEEEEESSGGGS-HHHHHHHHHH
T ss_pred ccc--c-------------------------------cccccccccHH-hhhcc--ccceeeehhhhhcchHHHHHHHHH
Confidence 654 3 58999999998 56655 9999999999998865 589999
Q ss_pred HHHhccCC--cEEEEEecC
Q psy1420 191 AYRVLKPG--GRFLCLEFS 207 (241)
Q Consensus 191 ~~~~Lkpg--G~l~i~~~~ 207 (241)
+++.|+|| |+|++.+.-
T Consensus 183 ~~~al~pg~~g~llI~e~~ 201 (241)
T PF00891_consen 183 AAAALKPGKDGRLLIIEMV 201 (241)
T ss_dssp HHHHSEECTTEEEEEEEEE
T ss_pred HHHHhCCCCCCeEEEEeec
Confidence 99999999 999998754
No 119
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=98.97 E-value=1.5e-08 Score=90.22 Aligned_cols=134 Identities=16% Similarity=0.231 Sum_probs=98.8
Q ss_pred HHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHH
Q psy1420 32 KDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLR 111 (241)
Q Consensus 32 ~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~ 111 (241)
.+.+++.+....+.+|||+|||.|..+ ..++. . ++..+++.+|.+..+++
T Consensus 147 S~lLl~~l~~~~~~~vlDlGCG~Gvlg-------------~~la~--------~---------~p~~~vtmvDvn~~Av~ 196 (300)
T COG2813 147 SRLLLETLPPDLGGKVLDLGCGYGVLG-------------LVLAK--------K---------SPQAKLTLVDVNARAVE 196 (300)
T ss_pred HHHHHHhCCccCCCcEEEeCCCccHHH-------------HHHHH--------h---------CCCCeEEEEecCHHHHH
Confidence 577888888877779999999999988 33332 1 24678999999999999
Q ss_pred HHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccH-----HH
Q psy1420 112 FLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRI-----DK 186 (241)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~-----~~ 186 (241)
.+++++. .+++. +..+...|..+.- .++||+|+|+--+|.-.+. .+
T Consensus 197 ~ar~Nl~-------------------------~N~~~--~~~v~~s~~~~~v--~~kfd~IisNPPfh~G~~v~~~~~~~ 247 (300)
T COG2813 197 SARKNLA-------------------------ANGVE--NTEVWASNLYEPV--EGKFDLIISNPPFHAGKAVVHSLAQE 247 (300)
T ss_pred HHHHhHH-------------------------HcCCC--ccEEEEecccccc--cccccEEEeCCCccCCcchhHHHHHH
Confidence 9999998 55554 2255666655542 2389999999888864332 47
Q ss_pred HHHHHHHhccCCcEEEEEecCHHHHHHHHHHCCCceEEE
Q psy1420 187 ALSEAYRVLKPGGRFLCLEFSHEEFKSMIESAGFQYVTY 225 (241)
Q Consensus 187 ~l~~~~~~LkpgG~l~i~~~~~~~~~~~l~~~Gf~~~~~ 225 (241)
.+..+.+.|++||.|.++-...-.....|++. |.-++.
T Consensus 248 ~i~~A~~~L~~gGeL~iVan~~l~y~~~L~~~-Fg~v~~ 285 (300)
T COG2813 248 IIAAAARHLKPGGELWIVANRHLPYEKKLKEL-FGNVEV 285 (300)
T ss_pred HHHHHHHhhccCCEEEEEEcCCCChHHHHHHh-cCCEEE
Confidence 89999999999999998876665555555555 443333
No 120
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=98.95 E-value=8e-09 Score=97.13 Aligned_cols=135 Identities=17% Similarity=0.263 Sum_probs=95.7
Q ss_pred HHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHH
Q psy1420 35 FIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLE 114 (241)
Q Consensus 35 ~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~ 114 (241)
+...+++.++.+|||+|||+|..+ ..++..++ ....++++|+++.+++.++
T Consensus 229 ~~~~l~~~~g~~VLD~cagpGgkt-------------~~la~~~~----------------~~g~V~a~Dis~~rl~~~~ 279 (431)
T PRK14903 229 VPLLMELEPGLRVLDTCAAPGGKT-------------TAIAELMK----------------DQGKILAVDISREKIQLVE 279 (431)
T ss_pred HHHHhCCCCCCEEEEeCCCccHHH-------------HHHHHHcC----------------CCCEEEEEECCHHHHHHHH
Confidence 344567788899999999999988 44444211 2468999999999999999
Q ss_pred HHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCC-CCCCceeEEeee-----eh-hhccc-----
Q psy1420 115 ANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELP-IESDSYSAYTIA-----FG-IRNVT----- 182 (241)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~D~V~~~-----~~-l~~~~----- 182 (241)
+++. +.++. ++++...|+..++ ...++||.|++. .+ ++.-+
T Consensus 280 ~n~~-------------------------r~g~~--~v~~~~~Da~~l~~~~~~~fD~Vl~DaPCsg~G~~~~~p~~~~~ 332 (431)
T PRK14903 280 KHAK-------------------------RLKLS--SIEIKIADAERLTEYVQDTFDRILVDAPCTSLGTARNHPEVLRR 332 (431)
T ss_pred HHHH-------------------------HcCCC--eEEEEECchhhhhhhhhccCCEEEECCCCCCCccccCChHHHHh
Confidence 9988 55654 4788889987765 335689999852 21 22111
Q ss_pred -----------cHHHHHHHHHHhccCCcEEEEEecCH------HHHHHHHHHC-CCceEEE
Q psy1420 183 -----------RIDKALSEAYRVLKPGGRFLCLEFSH------EEFKSMIESA-GFQYVTY 225 (241)
Q Consensus 183 -----------~~~~~l~~~~~~LkpgG~l~i~~~~~------~~~~~~l~~~-Gf~~~~~ 225 (241)
...+.|..+.+.|||||+++.++.+. +.++..++.. +|..++.
T Consensus 333 ~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~eEne~vv~~fl~~~~~~~~~~~ 393 (431)
T PRK14903 333 VNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVTKEENTEVVKRFVYEQKDAEVIDI 393 (431)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChhhCHHHHHHHHHhCCCcEEecc
Confidence 12567899999999999998877655 4445555543 5765443
No 121
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=98.94 E-value=5.3e-09 Score=89.88 Aligned_cols=143 Identities=16% Similarity=0.177 Sum_probs=96.6
Q ss_pred hcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHH
Q psy1420 38 RLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANA 117 (241)
Q Consensus 38 ~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~ 117 (241)
.+...++.+||..|||.|... .-++. .+..++|+|+|+.+++.+.+..
T Consensus 32 ~l~~~~~~rvLvPgCG~g~D~-------------~~La~-------------------~G~~VvGvDls~~Ai~~~~~e~ 79 (218)
T PF05724_consen 32 SLALKPGGRVLVPGCGKGYDM-------------LWLAE-------------------QGHDVVGVDLSPTAIEQAFEEN 79 (218)
T ss_dssp HHTTSTSEEEEETTTTTSCHH-------------HHHHH-------------------TTEEEEEEES-HHHHHHHHHHC
T ss_pred hcCCCCCCeEEEeCCCChHHH-------------HHHHH-------------------CCCeEEEEecCHHHHHHHHHHh
Confidence 355677889999999999987 33333 4678999999999999985543
Q ss_pred hcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCC-CceeEEeeeehhhccc--cHHHHHHHHHHh
Q psy1420 118 EELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIES-DSYSAYTIAFGIRNVT--RIDKALSEAYRV 194 (241)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~~D~V~~~~~l~~~~--~~~~~l~~~~~~ 194 (241)
.. ............ ...+++++.++|+..++... ++||+|+-...++.++ ...+..+.+.++
T Consensus 80 ~~-------------~~~~~~~~~~~~--~~~~~i~~~~gDfF~l~~~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~l 144 (218)
T PF05724_consen 80 NL-------------EPTVTSVGGFKR--YQAGRITIYCGDFFELPPEDVGKFDLIYDRTFLCALPPEMRERYAQQLASL 144 (218)
T ss_dssp TT-------------EEECTTCTTEEE--ETTSSEEEEES-TTTGGGSCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHC
T ss_pred cc-------------CCCcccccceee--ecCCceEEEEcccccCChhhcCCceEEEEecccccCCHHHHHHHHHHHHHH
Confidence 20 000000000000 12247899999999976443 4799999988888764 457899999999
Q ss_pred ccCCcEEEEE--ecCH------------HHHHHHHHHCCCceEEEEEe
Q psy1420 195 LKPGGRFLCL--EFSH------------EEFKSMIESAGFQYVTYENL 228 (241)
Q Consensus 195 LkpgG~l~i~--~~~~------------~~~~~~l~~~Gf~~~~~~~~ 228 (241)
|+|||.+++. ++.. +++.+++. .+|++...+..
T Consensus 145 l~p~g~~lLi~l~~~~~~~~GPPf~v~~~ev~~l~~-~~f~i~~l~~~ 191 (218)
T PF05724_consen 145 LKPGGRGLLITLEYPQGEMEGPPFSVTEEEVRELFG-PGFEIEELEEE 191 (218)
T ss_dssp EEEEEEEEEEEEES-CSCSSSSS----HHHHHHHHT-TTEEEEEEEEE
T ss_pred hCCCCcEEEEEEEcCCcCCCCcCCCCCHHHHHHHhc-CCcEEEEEecc
Confidence 9999994443 3221 88888888 88988776653
No 122
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=98.94 E-value=1.1e-08 Score=96.00 Aligned_cols=133 Identities=17% Similarity=0.313 Sum_probs=93.1
Q ss_pred HHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHH
Q psy1420 34 IFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFL 113 (241)
Q Consensus 34 ~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~ 113 (241)
.....+++.++.+|||+|||+|..+ ..++. .. ....++++|+++.+++.+
T Consensus 235 ~~~~~l~~~~g~~VLDlgaG~G~~t-------------~~la~----~~-------------~~~~v~a~D~s~~~l~~~ 284 (427)
T PRK10901 235 LAATLLAPQNGERVLDACAAPGGKT-------------AHILE----LA-------------PQAQVVALDIDAQRLERV 284 (427)
T ss_pred HHHHHcCCCCCCEEEEeCCCCChHH-------------HHHHH----Hc-------------CCCEEEEEeCCHHHHHHH
Confidence 3445667788999999999999988 44433 10 125799999999999999
Q ss_pred HHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCC--CCCCceeEEeeee------hhh------
Q psy1420 114 EANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELP--IESDSYSAYTIAF------GIR------ 179 (241)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~D~V~~~~------~l~------ 179 (241)
++++. +.++. ++++++|+..++ ...++||.|++.- .++
T Consensus 285 ~~n~~-------------------------~~g~~---~~~~~~D~~~~~~~~~~~~fD~Vl~D~Pcs~~G~~~~~p~~~ 336 (427)
T PRK10901 285 RENLQ-------------------------RLGLK---ATVIVGDARDPAQWWDGQPFDRILLDAPCSATGVIRRHPDIK 336 (427)
T ss_pred HHHHH-------------------------HcCCC---eEEEEcCcccchhhcccCCCCEEEECCCCCcccccccCcccc
Confidence 99988 54543 578888887653 2346799998421 111
Q ss_pred cccc----------HHHHHHHHHHhccCCcEEEEEecCH------HHHHHHHHHC-CCceEE
Q psy1420 180 NVTR----------IDKALSEAYRVLKPGGRFLCLEFSH------EEFKSMIESA-GFQYVT 224 (241)
Q Consensus 180 ~~~~----------~~~~l~~~~~~LkpgG~l~i~~~~~------~~~~~~l~~~-Gf~~~~ 224 (241)
+... ..+++..+.++|||||+++.++.+. +.+...+++. +|.++.
T Consensus 337 ~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~~v~~~l~~~~~~~~~~ 398 (427)
T PRK10901 337 WLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSILPEENEQQIKAFLARHPDAELLD 398 (427)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhCHHHHHHHHHhCCCCEEec
Confidence 1111 2478999999999999999876544 5566677665 576554
No 123
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.94 E-value=1.7e-08 Score=91.81 Aligned_cols=127 Identities=17% Similarity=0.232 Sum_probs=80.5
Q ss_pred CCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCC
Q psy1420 43 HDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPI 122 (241)
Q Consensus 43 ~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~ 122 (241)
++.+|||+|||.|.-. ..+.. .....++|+|++...++.|+++...+..
T Consensus 62 ~~~~VLDl~CGkGGDL-------------~Kw~~------------------~~i~~~vg~Dis~~si~ea~~Ry~~~~~ 110 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDL-------------QKWQK------------------AKIKHYVGIDISEESIEEARERYKQLKK 110 (331)
T ss_dssp TT-EEEEET-TTTTTH-------------HHHHH------------------TT-SEEEEEES-HHHHHHHHHHHHHHHT
T ss_pred CCCeEEEecCCCchhH-------------HHHHh------------------cCCCEEEEEeCCHHHHHHHHHHHHHhcc
Confidence 7789999999999877 45543 1356899999999999999988731100
Q ss_pred ccccccccceecceeeeeeccccCCCCCCeeEEecccCCCC----CC--CCceeEEeeeehhhc-cc---cHHHHHHHHH
Q psy1420 123 ESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELP----IE--SDSYSAYTIAFGIRN-VT---RIDKALSEAY 192 (241)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~----~~--~~~~D~V~~~~~l~~-~~---~~~~~l~~~~ 192 (241)
...+ ...+... ...++.+|..... +. ..+||+|-|.+++|+ +. ....+|.++.
T Consensus 111 ~~~~--------------~~~~~~f---~a~f~~~D~f~~~l~~~~~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs 173 (331)
T PF03291_consen 111 RNNS--------------KQYRFDF---IAEFIAADCFSESLREKLPPRSRKFDVVSCQFALHYAFESEEKARQFLKNVS 173 (331)
T ss_dssp STT---------------HTSEECC---EEEEEESTTCCSHHHCTSSSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHH
T ss_pred cccc--------------ccccccc---hhheeccccccchhhhhccccCCCcceeehHHHHHHhcCCHHHHHHHHHHHH
Confidence 0000 0000011 2456666655331 22 359999999999996 33 3457999999
Q ss_pred HhccCCcEEEEEecCHHHHHHHHHH
Q psy1420 193 RVLKPGGRFLCLEFSHEEFKSMIES 217 (241)
Q Consensus 193 ~~LkpgG~l~i~~~~~~~~~~~l~~ 217 (241)
+.|+|||+++.+......+...+++
T Consensus 174 ~~Lk~GG~FIgT~~d~~~i~~~l~~ 198 (331)
T PF03291_consen 174 SLLKPGGYFIGTTPDSDEIVKRLRE 198 (331)
T ss_dssp HTEEEEEEEEEEEE-HHHHHCCHHC
T ss_pred HhcCCCCEEEEEecCHHHHHHHHHh
Confidence 9999999999988777666444444
No 124
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=98.93 E-value=3.7e-08 Score=87.22 Aligned_cols=146 Identities=14% Similarity=0.199 Sum_probs=111.7
Q ss_pred CCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcC
Q psy1420 41 PTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEEL 120 (241)
Q Consensus 41 ~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~ 120 (241)
.....+|||+.||.|... ...+. ..+. ....+...|+++.+++.+++.+.
T Consensus 133 ~g~pvrIlDIAaG~GRYv-------------lDal~-------~~~~--------~~~~i~LrDys~~Nv~~g~~li~-- 182 (311)
T PF12147_consen 133 QGRPVRILDIAAGHGRYV-------------LDALE-------KHPE--------RPDSILLRDYSPINVEKGRALIA-- 182 (311)
T ss_pred cCCceEEEEeccCCcHHH-------------HHHHH-------hCCC--------CCceEEEEeCCHHHHHHHHHHHH--
Confidence 356779999999999866 33332 2211 23578999999999999999998
Q ss_pred CCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCC-CC--CCceeEEeeeehhhcccc---HHHHHHHHHHh
Q psy1420 121 PIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELP-IE--SDSYSAYTIAFGIRNVTR---IDKALSEAYRV 194 (241)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~--~~~~D~V~~~~~l~~~~~---~~~~l~~~~~~ 194 (241)
..++. +-++|.+.|+.... +. ....++++.+..+..++| ....++.+.+.
T Consensus 183 -----------------------~~gL~-~i~~f~~~dAfd~~~l~~l~p~P~l~iVsGL~ElF~Dn~lv~~sl~gl~~a 238 (311)
T PF12147_consen 183 -----------------------ERGLE-DIARFEQGDAFDRDSLAALDPAPTLAIVSGLYELFPDNDLVRRSLAGLARA 238 (311)
T ss_pred -----------------------HcCCc-cceEEEecCCCCHhHhhccCCCCCEEEEecchhhCCcHHHHHHHHHHHHHH
Confidence 66776 34589999977642 11 335699999988888887 45689999999
Q ss_pred ccCCcEEEEEe--cCH-------------------------HHHHHHHHHCCCceEEEEEecCceeEEEeeec
Q psy1420 195 LKPGGRFLCLE--FSH-------------------------EEFKSMIESAGFQYVTYENLTFGVVAIHSGFK 240 (241)
Q Consensus 195 LkpgG~l~i~~--~~~-------------------------~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~~ 240 (241)
+.|||+++... +++ +++.++++.+||+-++..-=.+|+..+-.|+|
T Consensus 239 l~pgG~lIyTgQPwHPQle~IAr~LtsHr~g~~WvMRrRsq~EmD~Lv~~aGF~K~~q~ID~~GIFTVSlA~r 311 (311)
T PF12147_consen 239 LEPGGYLIYTGQPWHPQLEMIARVLTSHRDGKAWVMRRRSQAEMDQLVEAAGFEKIDQRIDEWGIFTVSLARR 311 (311)
T ss_pred hCCCcEEEEcCCCCCcchHHHHHHHhcccCCCceEEEecCHHHHHHHHHHcCCchhhheeccCCceEEEeecC
Confidence 99999998764 332 89999999999996666555789988887765
No 125
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.93 E-value=1.5e-08 Score=97.01 Aligned_cols=126 Identities=16% Similarity=0.182 Sum_probs=89.3
Q ss_pred CCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCC
Q psy1420 43 HDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPI 122 (241)
Q Consensus 43 ~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~ 122 (241)
++.+|||+|||+|..+ ..++. .. +..+++++|+|+.+++.++.++.
T Consensus 138 ~~~~VLDlG~GsG~ia-------------i~la~-------~~----------p~~~v~avDis~~al~~A~~N~~---- 183 (506)
T PRK01544 138 KFLNILELGTGSGCIA-------------ISLLC-------EL----------PNANVIATDISLDAIEVAKSNAI---- 183 (506)
T ss_pred CCCEEEEccCchhHHH-------------HHHHH-------HC----------CCCeEEEEECCHHHHHHHHHHHH----
Confidence 3468999999999988 33332 00 24689999999999999999987
Q ss_pred ccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehh--------------hcc-------
Q psy1420 123 ESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGI--------------RNV------- 181 (241)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l--------------~~~------- 181 (241)
..++. .+++++.+|+.+. .+.++||+|+++--. .+-
T Consensus 184 ---------------------~~~l~-~~v~~~~~D~~~~-~~~~~fDlIvsNPPYi~~~~~~~l~~~v~~~EP~~AL~g 240 (506)
T PRK01544 184 ---------------------KYEVT-DRIQIIHSNWFEN-IEKQKFDFIVSNPPYISHSEKSEMAIETINYEPSIALFA 240 (506)
T ss_pred ---------------------HcCCc-cceeeeecchhhh-CcCCCccEEEECCCCCCchhhhhcCchhhccCcHHHhcC
Confidence 44544 4678888886542 234579999984210 010
Q ss_pred -----ccHHHHHHHHHHhccCCcEEEEEecCH---HHHHHHHHHCCCceEEEE
Q psy1420 182 -----TRIDKALSEAYRVLKPGGRFLCLEFSH---EEFKSMIESAGFQYVTYE 226 (241)
Q Consensus 182 -----~~~~~~l~~~~~~LkpgG~l~i~~~~~---~~~~~~l~~~Gf~~~~~~ 226 (241)
..+..+++.+.++|+|||.+++. .+. +.+.+++.+.||..+++.
T Consensus 241 g~dGl~~~~~il~~a~~~L~~gG~l~lE-ig~~q~~~v~~~~~~~g~~~~~~~ 292 (506)
T PRK01544 241 EEDGLQAYFIIAENAKQFLKPNGKIILE-IGFKQEEAVTQIFLDHGYNIESVY 292 (506)
T ss_pred CccHHHHHHHHHHHHHHhccCCCEEEEE-ECCchHHHHHHHHHhcCCCceEEE
Confidence 12346778889999999998763 332 788999999999866544
No 126
>KOG3045|consensus
Probab=98.92 E-value=1.9e-08 Score=87.52 Aligned_cols=75 Identities=23% Similarity=0.412 Sum_probs=64.7
Q ss_pred eeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHHHHHHhccCCcEEEEEecCH-----HHHHHHHHHCCCceEEEE
Q psy1420 152 LRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH-----EEFKSMIESAGFQYVTYE 226 (241)
Q Consensus 152 ~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~-----~~~~~~l~~~Gf~~~~~~ 226 (241)
-+++.+|+..+|.+++++|+++++.+|. .++...++.+++|+|+|||.+++.+... ..+...+...||.+....
T Consensus 212 ~~V~~cDm~~vPl~d~svDvaV~CLSLM-gtn~~df~kEa~RiLk~gG~l~IAEv~SRf~dv~~f~r~l~~lGF~~~~~d 290 (325)
T KOG3045|consen 212 ERVIACDMRNVPLEDESVDVAVFCLSLM-GTNLADFIKEANRILKPGGLLYIAEVKSRFSDVKGFVRALTKLGFDVKHKD 290 (325)
T ss_pred CceeeccccCCcCccCcccEEEeeHhhh-cccHHHHHHHHHHHhccCceEEEEehhhhcccHHHHHHHHHHcCCeeeehh
Confidence 4578899999999999999999888774 5788899999999999999999988555 789999999999976554
Q ss_pred E
Q psy1420 227 N 227 (241)
Q Consensus 227 ~ 227 (241)
.
T Consensus 291 ~ 291 (325)
T KOG3045|consen 291 V 291 (325)
T ss_pred h
Confidence 3
No 127
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=98.91 E-value=2.2e-08 Score=94.36 Aligned_cols=137 Identities=16% Similarity=0.263 Sum_probs=94.5
Q ss_pred HHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHH
Q psy1420 34 IFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFL 113 (241)
Q Consensus 34 ~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~ 113 (241)
.+...+...++.+|||+|||+|..+ ..++..++ ....++++|+++.+++.+
T Consensus 241 lv~~~l~~~~g~~VLDlgaG~G~~t-------------~~la~~~~----------------~~~~v~avDi~~~~l~~~ 291 (444)
T PRK14902 241 LVAPALDPKGGDTVLDACAAPGGKT-------------THIAELLK----------------NTGKVVALDIHEHKLKLI 291 (444)
T ss_pred HHHHHhCCCCCCEEEEeCCCCCHHH-------------HHHHHHhC----------------CCCEEEEEeCCHHHHHHH
Confidence 3444566678889999999999988 44443111 246899999999999999
Q ss_pred HHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCC-CCCceeEEeeeeh------hhccc----
Q psy1420 114 EANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPI-ESDSYSAYTIAFG------IRNVT---- 182 (241)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~D~V~~~~~------l~~~~---- 182 (241)
++++. +.++. +++++++|+...+. -.++||+|++.-- +.+.+
T Consensus 292 ~~n~~-------------------------~~g~~--~v~~~~~D~~~~~~~~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~ 344 (444)
T PRK14902 292 EENAK-------------------------RLGLT--NIETKALDARKVHEKFAEKFDKILVDAPCSGLGVIRRKPDIKY 344 (444)
T ss_pred HHHHH-------------------------HcCCC--eEEEEeCCcccccchhcccCCEEEEcCCCCCCeeeccCcchhh
Confidence 99988 66665 48889999876531 1267999986421 11111
Q ss_pred -----c-------HHHHHHHHHHhccCCcEEEEEecCH------HHHHHHHHHCC-CceEEEE
Q psy1420 183 -----R-------IDKALSEAYRVLKPGGRFLCLEFSH------EEFKSMIESAG-FQYVTYE 226 (241)
Q Consensus 183 -----~-------~~~~l~~~~~~LkpgG~l~i~~~~~------~~~~~~l~~~G-f~~~~~~ 226 (241)
+ ...+|+.+.++|||||+++.++.+. ..+...+++.+ |..+...
T Consensus 345 ~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~vv~~~l~~~~~~~~~~~~ 407 (444)
T PRK14902 345 NKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTIEKEENEEVIEAFLEEHPEFELVPLQ 407 (444)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCCChhhhHHHHHHHHHhCCCcEEeccc
Confidence 1 1357999999999999998755332 44556666653 7766543
No 128
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=98.89 E-value=5.2e-08 Score=85.33 Aligned_cols=124 Identities=13% Similarity=0.077 Sum_probs=84.3
Q ss_pred CCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCCc
Q psy1420 44 DTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIE 123 (241)
Q Consensus 44 ~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~ 123 (241)
+.+|||+|||+|..+ ..++. . . ...+++++|+++.+++.+++++.
T Consensus 87 ~~~vLDlg~GsG~i~-------------l~la~----~---~----------~~~~v~~vDis~~al~~A~~N~~----- 131 (251)
T TIGR03704 87 TLVVVDLCCGSGAVG-------------AALAA----A---L----------DGIELHAADIDPAAVRCARRNLA----- 131 (251)
T ss_pred CCEEEEecCchHHHH-------------HHHHH----h---C----------CCCEEEEEECCHHHHHHHHHHHH-----
Confidence 458999999999988 33332 0 0 23579999999999999999987
Q ss_pred cccccccceecceeeeeeccccCCCCCCeeEEecccCCC-CC-CCCceeEEeeeehh------hcc--------------
Q psy1420 124 SDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL-PI-ESDSYSAYTIAFGI------RNV-------------- 181 (241)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~-~~~~~D~V~~~~~l------~~~-------------- 181 (241)
..+ .+++++|+.+. +. ..++||+|+++--. ...
T Consensus 132 --------------------~~~-----~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~ 186 (251)
T TIGR03704 132 --------------------DAG-----GTVHEGDLYDALPTALRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALD 186 (251)
T ss_pred --------------------HcC-----CEEEEeechhhcchhcCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhc
Confidence 221 35667776542 21 12579999976311 100
Q ss_pred ------ccHHHHHHHHHHhccCCcEEEEEecCH--HHHHHHHHHCCCceEEEEE
Q psy1420 182 ------TRIDKALSEAYRVLKPGGRFLCLEFSH--EEFKSMIESAGFQYVTYEN 227 (241)
Q Consensus 182 ------~~~~~~l~~~~~~LkpgG~l~i~~~~~--~~~~~~l~~~Gf~~~~~~~ 227 (241)
.-...++..+.++|+|||++++..... .++.+++++.||...-...
T Consensus 187 gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~~~~~v~~~l~~~g~~~~~~~~ 240 (251)
T TIGR03704 187 GGADGLDVLRRVAAGAPDWLAPGGHLLVETSERQAPLAVEAFARAGLIARVASS 240 (251)
T ss_pred CCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcchHHHHHHHHHHCCCCceeeEc
Confidence 013477788889999999998754322 7788899999997654443
No 129
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=98.88 E-value=5.6e-08 Score=86.52 Aligned_cols=136 Identities=21% Similarity=0.246 Sum_probs=94.4
Q ss_pred eEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCCccc
Q psy1420 46 KLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIESD 125 (241)
Q Consensus 46 ~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~ 125 (241)
+|||+|||+|..+ ..++. . .....++++|+|+.+++.|+.++.
T Consensus 113 ~ilDlGTGSG~ia-------------i~la~-------~----------~~~~~V~a~Dis~~Al~~A~~Na~------- 155 (280)
T COG2890 113 RILDLGTGSGAIA-------------IALAK-------E----------GPDAEVIAVDISPDALALARENAE------- 155 (280)
T ss_pred cEEEecCChHHHH-------------HHHHh-------h----------CcCCeEEEEECCHHHHHHHHHHHH-------
Confidence 7999999999988 43333 1 134689999999999999999998
Q ss_pred cccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeee--hhh-----------------------c
Q psy1420 126 SYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAF--GIR-----------------------N 180 (241)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~--~l~-----------------------~ 180 (241)
..++. ++.++..|..+. . .++||+|+++- .-. .
T Consensus 156 ------------------~~~l~--~~~~~~~dlf~~-~-~~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dG 213 (280)
T COG2890 156 ------------------RNGLV--RVLVVQSDLFEP-L-RGKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDG 213 (280)
T ss_pred ------------------HcCCc--cEEEEeeecccc-c-CCceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccH
Confidence 44442 344444454432 1 23788887651 100 0
Q ss_pred cccHHHHHHHHHHhccCCcEEEEEec--CHHHHHHHHHHCC-CceEEEEEecCceeEEEeeec
Q psy1420 181 VTRIDKALSEAYRVLKPGGRFLCLEF--SHEEFKSMIESAG-FQYVTYENLTFGVVAIHSGFK 240 (241)
Q Consensus 181 ~~~~~~~l~~~~~~LkpgG~l~i~~~--~~~~~~~~l~~~G-f~~~~~~~~~~~~~~~~~~~~ 240 (241)
..-..+++.++.+.|+|||.+++-.- ..+.+++++.+.| |..+...+-.+|...+..+.+
T Consensus 214 l~~~~~i~~~a~~~l~~~g~l~le~g~~q~~~v~~~~~~~~~~~~v~~~~d~~g~~rv~~~~~ 276 (280)
T COG2890 214 LEVYRRILGEAPDILKPGGVLILEIGLTQGEAVKALFEDTGFFEIVETLKDLFGRDRVVLAKL 276 (280)
T ss_pred HHHHHHHHHhhHHHcCCCcEEEEEECCCcHHHHHHHHHhcCCceEEEEEecCCCceEEEEEEe
Confidence 11235788889999999998877432 3388999999999 777777777777777766543
No 130
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=98.88 E-value=8.1e-08 Score=84.83 Aligned_cols=190 Identities=16% Similarity=0.180 Sum_probs=123.1
Q ss_pred HHHHHhhhhhccccchhhhhhhhHHHHHHHHHhhcC----CCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhh
Q psy1420 5 MYEVFENVAKSYDTMNDAMSFGIHRLWKDIFIDRLG----PTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQ 80 (241)
Q Consensus 5 ~~~~f~~~~~~yd~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (241)
+...+..+..-|..............+.+.+.+.+. .+.+.+||-.|||.|.++ ..++.
T Consensus 14 V~s~L~q~~RDWS~eg~~ER~~~~~~I~~~L~~~~p~~~~~~~~~~VLVPGsGLGRLa-------------~Eia~---- 76 (270)
T PF07942_consen 14 VRSTLKQFVRDWSSEGEEERDPCYSPILDELESLFPPAGSDRSKIRVLVPGSGLGRLA-------------WEIAK---- 76 (270)
T ss_pred HHHHHHHHHhhCchhhHHHHHHHHHHHHHHHHHhhcccccCCCccEEEEcCCCcchHH-------------HHHhh----
Confidence 344444455545442222222223334455555544 245678999999999998 55555
Q ss_pred hhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCCccccccccceecc----------eeeeeecc--cc--C
Q psy1420 81 LIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIESDSYSAYTIAFG----------IRNVTRID--KI--D 146 (241)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~--~~--~ 146 (241)
.+..+.+.|.|-.|+-...-... ......++..+++... .+.+.-.+ .. -
T Consensus 77 ---------------~G~~~~gnE~S~~Mll~s~fiLn-~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPDv~p~~~~ 140 (270)
T PF07942_consen 77 ---------------LGYAVQGNEFSYFMLLASNFILN-HCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPDVDPSSEL 140 (270)
T ss_pred ---------------ccceEEEEEchHHHHHHHHHHHc-ccCCCCcEEEecceecccCCCCHHHhCCceEeCCcCccccc
Confidence 45688999999999766554333 1122333333333332 22222221 00 0
Q ss_pred CCCCCeeEEecccCCCCCCC---CceeEEeeeehhhccccHHHHHHHHHHhccCCcEEEE------------------Ee
Q psy1420 147 IPNPRLRFLEANAEELPIES---DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLC------------------LE 205 (241)
Q Consensus 147 ~~~~~~~~~~~d~~~~~~~~---~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i------------------~~ 205 (241)
-.+.++....+|+.+...++ +++|+|++++.+...++.-..++.+.++|||||+.+= ++
T Consensus 141 ~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~Ni~~Yi~tI~~lLkpgG~WIN~GPLlyh~~~~~~~~~~sve 220 (270)
T PF07942_consen 141 PSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAENIIEYIETIEHLLKPGGYWINFGPLLYHFEPMSIPNEMSVE 220 (270)
T ss_pred CCCCceeEecCccEEecCCcccCCcccEEEEEEEeechHHHHHHHHHHHHHhccCCEEEecCCccccCCCCCCCCCcccC
Confidence 11257888999988875444 7999999999999989999999999999999997662 23
Q ss_pred cCHHHHHHHHHHCCCceEEEEE
Q psy1420 206 FSHEEFKSMIESAGFQYVTYEN 227 (241)
Q Consensus 206 ~~~~~~~~~l~~~Gf~~~~~~~ 227 (241)
.+.+++..++++.||++++.+.
T Consensus 221 Ls~eEi~~l~~~~GF~~~~~~~ 242 (270)
T PF07942_consen 221 LSLEEIKELIEKLGFEIEKEES 242 (270)
T ss_pred CCHHHHHHHHHHCCCEEEEEEE
Confidence 4449999999999999988776
No 131
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.88 E-value=4.6e-09 Score=88.82 Aligned_cols=138 Identities=17% Similarity=0.130 Sum_probs=77.7
Q ss_pred CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCC
Q psy1420 42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP 121 (241)
Q Consensus 42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~ 121 (241)
.+..+|+..||++|..+ |+..++ +.+....... ...++.|+|+|+.+++.|++...
T Consensus 30 ~~~lrIWSagCStGeE~-----------YSlAml--l~e~~~~~~~--------~~~~I~atDi~~~~L~~Ar~G~Y--- 85 (196)
T PF01739_consen 30 GRPLRIWSAGCSTGEEP-----------YSLAML--LLELLPGALG--------WDFRILATDISPSALEKARAGIY--- 85 (196)
T ss_dssp -S-EEEEETT-TTTHHH-----------HHHHHH--HHHHH-S-TT---------SEEEEEEES-HHHHHHHHHTEE---
T ss_pred CCCeEEEECCCCCChhH-----------HHHHHH--HHHHhcccCC--------CceEEEEEECCHHHHHHHHhCCC---
Confidence 35679999999999987 444442 2222222111 25689999999999999988654
Q ss_pred Cccccccccceecceeeeeec------cccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccH--HHHHHHHHH
Q psy1420 122 IESDSYSAYTIAFGIRNVTRI------DKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRI--DKALSEAYR 193 (241)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~--~~~l~~~~~ 193 (241)
.....+.-+-...-+.+... .+..+. ..+.|...|+.+.+...+.||+|+|.+++-+++.. .++++.+++
T Consensus 86 -~~~~~~~~~~~~~~ryf~~~~~~~~~v~~~lr-~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~ 163 (196)
T PF01739_consen 86 -PERSLRGLPPAYLRRYFTERDGGGYRVKPELR-KMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHR 163 (196)
T ss_dssp -EGGGGTTS-HHHHHHHEEEE-CCCTTE-HHHH-TTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGG
T ss_pred -CHHHHhhhHHHHHHHhccccCCCceeEChHHc-CceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHH
Confidence 11111111101101111011 111122 47899999988843446789999999999887654 799999999
Q ss_pred hccCCcEEEEEe
Q psy1420 194 VLKPGGRFLCLE 205 (241)
Q Consensus 194 ~LkpgG~l~i~~ 205 (241)
.|+|||+|++..
T Consensus 164 ~L~pgG~L~lG~ 175 (196)
T PF01739_consen 164 SLKPGGYLFLGH 175 (196)
T ss_dssp GEEEEEEEEE-T
T ss_pred HcCCCCEEEEec
Confidence 999999999853
No 132
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=98.87 E-value=2.2e-08 Score=88.20 Aligned_cols=126 Identities=17% Similarity=0.218 Sum_probs=88.2
Q ss_pred hhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHH
Q psy1420 37 DRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEAN 116 (241)
Q Consensus 37 ~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~ 116 (241)
..+.++++.+|||+|||+|..+ ..++..++ ....++++|+++.+++.++++
T Consensus 65 ~~l~~~~g~~VLDl~ag~G~kt-------------~~la~~~~----------------~~g~v~a~D~~~~~l~~~~~n 115 (264)
T TIGR00446 65 LALEPDPPERVLDMAAAPGGKT-------------TQISALMK----------------NEGAIVANEFSKSRTKVLIAN 115 (264)
T ss_pred HHhCCCCcCEEEEECCCchHHH-------------HHHHHHcC----------------CCCEEEEEcCCHHHHHHHHHH
Confidence 3556788899999999999988 44333111 235799999999999999999
Q ss_pred HhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeee------hhhccc--------
Q psy1420 117 AEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAF------GIRNVT-------- 182 (241)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~------~l~~~~-------- 182 (241)
+. +.++. ++.+...|+...+...++||+|++.- .++.-+
T Consensus 116 ~~-------------------------~~g~~--~v~~~~~D~~~~~~~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~ 168 (264)
T TIGR00446 116 IN-------------------------RCGVL--NVAVTNFDGRVFGAAVPKFDAILLDAPCSGEGVIRKDPSRKKNWSE 168 (264)
T ss_pred HH-------------------------HcCCC--cEEEecCCHHHhhhhccCCCEEEEcCCCCCCcccccChhhhhcCCH
Confidence 88 55554 57888888776554445699998531 111111
Q ss_pred --------cHHHHHHHHHHhccCCcEEEEEecCH------HHHHHHHHHC
Q psy1420 183 --------RIDKALSEAYRVLKPGGRFLCLEFSH------EEFKSMIESA 218 (241)
Q Consensus 183 --------~~~~~l~~~~~~LkpgG~l~i~~~~~------~~~~~~l~~~ 218 (241)
...++|+.+.+.|||||+|+.++.+. +-++.+++..
T Consensus 169 ~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~~~Ene~vv~~~l~~~ 218 (264)
T TIGR00446 169 EDIQEISALQKELIDSAFDALKPGGVLVYSTCSLEPEENEAVVDYLLEKR 218 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChHHHHHHHHHHHHhC
Confidence 12468999999999999998876444 3345555553
No 133
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=98.85 E-value=3.8e-08 Score=83.37 Aligned_cols=140 Identities=17% Similarity=0.214 Sum_probs=94.2
Q ss_pred HHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHH
Q psy1420 33 DIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRF 112 (241)
Q Consensus 33 ~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~ 112 (241)
+.+.+.+.. .+.+|||||||||..+ ..+.+ .+ +.....-.|+++.....
T Consensus 16 ~vL~~~l~~-~~~~vLEiaSGtGqHa-------------~~FA~----~l-------------P~l~WqPSD~~~~~~~s 64 (204)
T PF06080_consen 16 EVLKQYLPD-SGTRVLEIASGTGQHA-------------VYFAQ----AL-------------PHLTWQPSDPDDNLRPS 64 (204)
T ss_pred HHHHHHhCc-cCceEEEEcCCccHHH-------------HHHHH----HC-------------CCCEEcCCCCChHHHhh
Confidence 334444432 2326999999999988 33333 11 24456677888888777
Q ss_pred HHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCC--------CCCceeEEeeeehhhcc--c
Q psy1420 113 LEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPI--------ESDSYSAYTIAFGIRNV--T 182 (241)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~--------~~~~~D~V~~~~~l~~~--~ 182 (241)
+.+.+. ..+.++ -...+..|+...+. ..++||+|+|.+.+|-. .
T Consensus 65 I~a~~~-------------------------~~~~~N-v~~P~~lDv~~~~w~~~~~~~~~~~~~D~i~~~N~lHI~p~~ 118 (204)
T PF06080_consen 65 IRAWIA-------------------------EAGLPN-VRPPLALDVSAPPWPWELPAPLSPESFDAIFCINMLHISPWS 118 (204)
T ss_pred HHHHHH-------------------------hcCCcc-cCCCeEeecCCCCCccccccccCCCCcceeeehhHHHhcCHH
Confidence 777665 223221 11223455544422 24589999999999864 4
Q ss_pred cHHHHHHHHHHhccCCcEEEEEecCH-----------------------------HHHHHHHHHCCCceEEEEEec
Q psy1420 183 RIDKALSEAYRVLKPGGRFLCLEFSH-----------------------------EEFKSMIESAGFQYVTYENLT 229 (241)
Q Consensus 183 ~~~~~l~~~~~~LkpgG~l~i~~~~~-----------------------------~~~~~~l~~~Gf~~~~~~~~~ 229 (241)
.-+.+++.+.++|+|||.|++.-... +++.++.+++|+..++...+.
T Consensus 119 ~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~rdp~~GiRD~e~v~~lA~~~GL~l~~~~~MP 194 (204)
T PF06080_consen 119 AVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRSRDPEWGIRDIEDVEALAAAHGLELEEDIDMP 194 (204)
T ss_pred HHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhcCCCCcCccCHHHHHHHHHHCCCccCcccccC
Confidence 56799999999999999999854222 889999999999988776663
No 134
>PRK01581 speE spermidine synthase; Validated
Probab=98.85 E-value=4.1e-08 Score=89.94 Aligned_cols=135 Identities=19% Similarity=0.280 Sum_probs=91.6
Q ss_pred CCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCCc
Q psy1420 44 DTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIE 123 (241)
Q Consensus 44 ~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~ 123 (241)
..+||++|||+|..+ ..++. . ....+++++|+++.+++.|+.... ++
T Consensus 151 PkrVLIIGgGdG~tl-------------relLk--------~---------~~v~~It~VEIDpeVIelAr~~~~-L~-- 197 (374)
T PRK01581 151 PKRVLILGGGDGLAL-------------REVLK--------Y---------ETVLHVDLVDLDGSMINMARNVPE-LV-- 197 (374)
T ss_pred CCEEEEECCCHHHHH-------------HHHHh--------c---------CCCCeEEEEeCCHHHHHHHHhccc-cc--
Confidence 449999999999866 44433 1 134689999999999999986211 00
Q ss_pred cccccccceecceeeeeeccccCCCCCCeeEEecccCCC-CCCCCceeEEeeeehhhc---ccc--HHHHHHHHHHhccC
Q psy1420 124 SDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL-PIESDSYSAYTIAFGIRN---VTR--IDKALSEAYRVLKP 197 (241)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~D~V~~~~~l~~---~~~--~~~~l~~~~~~Lkp 197 (241)
...+..+..++++++.+|+... +...++||+|++...-.. ... -..+++.+++.|+|
T Consensus 198 -----------------~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkP 260 (374)
T PRK01581 198 -----------------SLNKSAFFDNRVNVHVCDAKEFLSSPSSLYDVIIIDFPDPATELLSTLYTSELFARIATFLTE 260 (374)
T ss_pred -----------------hhccccCCCCceEEEECcHHHHHHhcCCCccEEEEcCCCccccchhhhhHHHHHHHHHHhcCC
Confidence 0001122236899999997763 334568999998642110 001 15688999999999
Q ss_pred CcEEEEEecCH-------HHHHHHHHHCCCceEEEEEe
Q psy1420 198 GGRFLCLEFSH-------EEFKSMIESAGFQYVTYENL 228 (241)
Q Consensus 198 gG~l~i~~~~~-------~~~~~~l~~~Gf~~~~~~~~ 228 (241)
||++++..-+. ..+.+.++++|+....+...
T Consensus 261 gGV~V~Qs~sp~~~~~~~~~i~~tL~~af~~v~~y~t~ 298 (374)
T PRK01581 261 DGAFVCQSNSPADAPLVYWSIGNTIEHAGLTVKSYHTI 298 (374)
T ss_pred CcEEEEecCChhhhHHHHHHHHHHHHHhCCceEEEEEe
Confidence 99998764433 44678899999988777765
No 135
>PHA03411 putative methyltransferase; Provisional
Probab=98.83 E-value=2.2e-08 Score=88.58 Aligned_cols=118 Identities=9% Similarity=0.122 Sum_probs=85.1
Q ss_pred CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCC
Q psy1420 42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP 121 (241)
Q Consensus 42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~ 121 (241)
..+.+|||+|||+|..+ ..++. .. ...+++++|+++.+++.++++..
T Consensus 63 ~~~grVLDLGcGsGils-------------l~la~-------r~----------~~~~V~gVDisp~al~~Ar~n~~--- 109 (279)
T PHA03411 63 HCTGKVLDLCAGIGRLS-------------FCMLH-------RC----------KPEKIVCVELNPEFARIGKRLLP--- 109 (279)
T ss_pred ccCCeEEEcCCCCCHHH-------------HHHHH-------hC----------CCCEEEEEECCHHHHHHHHHhCc---
Confidence 44569999999999877 32222 00 13579999999999999876532
Q ss_pred CccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhcccc------------------
Q psy1420 122 IESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTR------------------ 183 (241)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~------------------ 183 (241)
+++++++|+.+... ..+||+|+++-.+.+.+.
T Consensus 110 -----------------------------~v~~v~~D~~e~~~-~~kFDlIIsNPPF~~l~~~d~~~~~~~~GG~~g~~~ 159 (279)
T PHA03411 110 -----------------------------EAEWITSDVFEFES-NEKFDVVISNPPFGKINTTDTKDVFEYTGGEFEFKV 159 (279)
T ss_pred -----------------------------CCEEEECchhhhcc-cCCCcEEEEcCCccccCchhhhhhhhhccCcccccc
Confidence 46788899887643 468999999655543211
Q ss_pred --HHHHHHHHHHhccCCcEEEEEec---------CHHHHHHHHHHCCCce
Q psy1420 184 --IDKALSEAYRVLKPGGRFLCLEF---------SHEEFKSMIESAGFQY 222 (241)
Q Consensus 184 --~~~~l~~~~~~LkpgG~l~i~~~---------~~~~~~~~l~~~Gf~~ 222 (241)
..+.+.....+|+|+|.+.+.-. +.++.+++++++||..
T Consensus 160 l~~~~~l~~v~~~L~p~G~~~~~yss~~~y~~sl~~~~y~~~l~~~g~~~ 209 (279)
T PHA03411 160 MTLGQKFADVGYFIVPTGSAGFAYSGRPYYDGTMKSNKYLKWSKQTGLVT 209 (279)
T ss_pred ccHHHHHhhhHheecCCceEEEEEeccccccccCCHHHHHHHHHhcCcEe
Confidence 24667777889999998766422 2299999999999964
No 136
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.83 E-value=3.3e-08 Score=98.15 Aligned_cols=130 Identities=13% Similarity=0.153 Sum_probs=94.9
Q ss_pred CCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCC
Q psy1420 43 HDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPI 122 (241)
Q Consensus 43 ~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~ 122 (241)
++.+|||+|||+|..+ ..++. ....+++++|+|+.+++.+++++.
T Consensus 538 ~g~rVLDlf~gtG~~s-------------l~aa~------------------~Ga~~V~~vD~s~~al~~a~~N~~---- 582 (702)
T PRK11783 538 KGKDFLNLFAYTGTAS-------------VHAAL------------------GGAKSTTTVDMSNTYLEWAERNFA---- 582 (702)
T ss_pred CCCeEEEcCCCCCHHH-------------HHHHH------------------CCCCEEEEEeCCHHHHHHHHHHHH----
Confidence 4679999999999998 43333 023469999999999999999998
Q ss_pred ccccccccceecceeeeeeccccCCCCCCeeEEecccCCC-CCCCCceeEEeeeeh-----------hhccccHHHHHHH
Q psy1420 123 ESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL-PIESDSYSAYTIAFG-----------IRNVTRIDKALSE 190 (241)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~D~V~~~~~-----------l~~~~~~~~~l~~ 190 (241)
..++...+++++++|+.+. .....+||+|++.-- .....+....+..
T Consensus 583 ---------------------~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDPP~f~~~~~~~~~~~~~~~y~~l~~~ 641 (702)
T PRK11783 583 ---------------------LNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDPPTFSNSKRMEDSFDVQRDHVALIKD 641 (702)
T ss_pred ---------------------HhCCCccceEEEEccHHHHHHHcCCCcCEEEECCCCCCCCCccchhhhHHHHHHHHHHH
Confidence 5555424688999997653 111458999997421 1123345678888
Q ss_pred HHHhccCCcEEEEEecCH--HHHHHHHHHCCCceEEEEEe
Q psy1420 191 AYRVLKPGGRFLCLEFSH--EEFKSMIESAGFQYVTYENL 228 (241)
Q Consensus 191 ~~~~LkpgG~l~i~~~~~--~~~~~~l~~~Gf~~~~~~~~ 228 (241)
+.++|+|||.+++..... ....+.+.++|+.+..++..
T Consensus 642 a~~lL~~gG~l~~~~~~~~~~~~~~~~~~~g~~~~~i~~~ 681 (702)
T PRK11783 642 AKRLLRPGGTLYFSNNKRGFKMDEEGLAKLGLKAEEITAK 681 (702)
T ss_pred HHHHcCCCCEEEEEeCCccCChhHHHHHhCCCeEEEEecC
Confidence 999999999998765444 44478889999998877755
No 137
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=98.83 E-value=2.7e-08 Score=85.82 Aligned_cols=138 Identities=9% Similarity=-0.019 Sum_probs=93.8
Q ss_pred cCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHh
Q psy1420 39 LGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAE 118 (241)
Q Consensus 39 l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~ 118 (241)
+...++.+||+.|||.|..+ .-++. .+..++|+|+|+..++.+.+...
T Consensus 39 l~~~~~~rvLvPgCGkg~D~-------------~~LA~-------------------~G~~V~GvDlS~~Ai~~~~~e~~ 86 (226)
T PRK13256 39 LNINDSSVCLIPMCGCSIDM-------------LFFLS-------------------KGVKVIGIELSEKAVLSFFSQNT 86 (226)
T ss_pred cCCCCCCeEEEeCCCChHHH-------------HHHHh-------------------CCCcEEEEecCHHHHHHHHHHcC
Confidence 34446779999999999987 33333 46789999999999999876432
Q ss_pred cCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCC---CCceeEEeeeehhhcccc--HHHHHHHHHH
Q psy1420 119 ELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIE---SDSYSAYTIAFGIRNVTR--IDKALSEAYR 193 (241)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~---~~~~D~V~~~~~l~~~~~--~~~~l~~~~~ 193 (241)
..| ++. .... .......++++.++|+.+++.. .++||+|+....+++++. ..+..+.+.+
T Consensus 87 ~~~---------~~~----~~~~--~~~~~~~~i~~~~gD~f~l~~~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~ 151 (226)
T PRK13256 87 INY---------EVI----HGND--YKLYKGDDIEIYVADIFNLPKIANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLE 151 (226)
T ss_pred CCc---------cee----cccc--cceeccCceEEEEccCcCCCccccccCCcCeeeeehhHhcCCHHHHHHHHHHHHH
Confidence 000 000 0000 0011123689999999998632 258999999988888764 4688999999
Q ss_pred hccCCcEEEEEecCH-------------HHHHHHHHHCCCceEE
Q psy1420 194 VLKPGGRFLCLEFSH-------------EEFKSMIESAGFQYVT 224 (241)
Q Consensus 194 ~LkpgG~l~i~~~~~-------------~~~~~~l~~~Gf~~~~ 224 (241)
+|+|||.++++.+.. +++++++.. +|.+..
T Consensus 152 lL~pgg~llll~~~~~~~~~GPPf~v~~~e~~~lf~~-~~~i~~ 194 (226)
T PRK13256 152 VCSNNTQILLLVMEHDKKSQTPPYSVTQAELIKNFSA-KIKFEL 194 (226)
T ss_pred HhCCCcEEEEEEEecCCCCCCCCCcCCHHHHHHhccC-CceEEE
Confidence 999999988876532 677766643 344433
No 138
>KOG2940|consensus
Probab=98.82 E-value=9.7e-09 Score=88.08 Aligned_cols=123 Identities=12% Similarity=0.183 Sum_probs=99.3
Q ss_pred CCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCCc
Q psy1420 44 DTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIE 123 (241)
Q Consensus 44 ~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~ 123 (241)
-..++|+|||-|... .++.. ....+++.+|-|-.|++.++.. +
T Consensus 73 fp~a~diGcs~G~v~-------------rhl~~------------------e~vekli~~DtS~~M~~s~~~~-q----- 115 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVK-------------RHLRG------------------EGVEKLIMMDTSYDMIKSCRDA-Q----- 115 (325)
T ss_pred Ccceeecccchhhhh-------------HHHHh------------------cchhheeeeecchHHHHHhhcc-C-----
Confidence 346999999999988 44433 1356899999999999998743 3
Q ss_pred cccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHHHHHHhccCCcEEEE
Q psy1420 124 SDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLC 203 (241)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i 203 (241)
++++. +.....|-+.+++.++++|+|+++.++||+++....+..++..|||+|.++.
T Consensus 116 --------------------dp~i~---~~~~v~DEE~Ldf~ens~DLiisSlslHW~NdLPg~m~~ck~~lKPDg~Fia 172 (325)
T KOG2940|consen 116 --------------------DPSIE---TSYFVGDEEFLDFKENSVDLIISSLSLHWTNDLPGSMIQCKLALKPDGLFIA 172 (325)
T ss_pred --------------------CCceE---EEEEecchhcccccccchhhhhhhhhhhhhccCchHHHHHHHhcCCCccchh
Confidence 33333 6677888888999999999999999999999999999999999999999986
Q ss_pred EecCH-------------------------------HHHHHHHHHCCCceEEEE
Q psy1420 204 LEFSH-------------------------------EEFKSMIESAGFQYVTYE 226 (241)
Q Consensus 204 ~~~~~-------------------------------~~~~~~l~~~Gf~~~~~~ 226 (241)
.-+.. .++-.++..+||....+.
T Consensus 173 smlggdTLyELR~slqLAelER~GGiSphiSPf~qvrDiG~LL~rAGF~m~tvD 226 (325)
T KOG2940|consen 173 SMLGGDTLYELRCSLQLAELEREGGISPHISPFTQVRDIGNLLTRAGFSMLTVD 226 (325)
T ss_pred HHhccccHHHHHHHhhHHHHHhccCCCCCcChhhhhhhhhhHHhhcCcccceec
Confidence 54333 788889999999875544
No 139
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=98.82 E-value=4.7e-08 Score=92.16 Aligned_cols=140 Identities=13% Similarity=0.110 Sum_probs=96.7
Q ss_pred HHHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHh
Q psy1420 30 LWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPR 109 (241)
Q Consensus 30 ~~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~ 109 (241)
.+.+.+++.+...++.+|||+|||+|..+ ..++. ....++++|+|+.+
T Consensus 284 ~l~~~vl~~l~~~~~~~VLDlgcGtG~~s-------------l~la~-------------------~~~~V~gvD~s~~a 331 (443)
T PRK13168 284 KMVARALEWLDPQPGDRVLDLFCGLGNFT-------------LPLAR-------------------QAAEVVGVEGVEAM 331 (443)
T ss_pred HHHHHHHHHhcCCCCCEEEEEeccCCHHH-------------HHHHH-------------------hCCEEEEEeCCHHH
Confidence 34556666667677889999999999988 44443 24579999999999
Q ss_pred HHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCC----CCCCCceeEEeeeehhhccccHH
Q psy1420 110 LRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL----PIESDSYSAYTIAFGIRNVTRID 185 (241)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~----~~~~~~~D~V~~~~~l~~~~~~~ 185 (241)
++.+++++. ..++. ++++.++|+.+. +...++||+|++.---.. ..
T Consensus 332 l~~A~~n~~-------------------------~~~~~--~v~~~~~d~~~~l~~~~~~~~~fD~Vi~dPPr~g---~~ 381 (443)
T PRK13168 332 VERARENAR-------------------------RNGLD--NVTFYHANLEEDFTDQPWALGGFDKVLLDPPRAG---AA 381 (443)
T ss_pred HHHHHHHHH-------------------------HcCCC--ceEEEEeChHHhhhhhhhhcCCCCEEEECcCCcC---hH
Confidence 999999887 44544 588999997642 233467999986422111 23
Q ss_pred HHHHHHHHhccCCcEEEEEecCH---HHHHHHHHHCCCceEEEEEecCcee
Q psy1420 186 KALSEAYRVLKPGGRFLCLEFSH---EEFKSMIESAGFQYVTYENLTFGVV 233 (241)
Q Consensus 186 ~~l~~~~~~LkpgG~l~i~~~~~---~~~~~~l~~~Gf~~~~~~~~~~~~~ 233 (241)
..++.+.+ ++|++.++++--.. .++. .|.+.||++.++..+.+--.
T Consensus 382 ~~~~~l~~-~~~~~ivyvSCnp~tlaRDl~-~L~~~gY~l~~i~~~DmFP~ 430 (443)
T PRK13168 382 EVMQALAK-LGPKRIVYVSCNPATLARDAG-VLVEAGYRLKRAGMLDMFPH 430 (443)
T ss_pred HHHHHHHh-cCCCeEEEEEeChHHhhccHH-HHhhCCcEEEEEEEeccCCC
Confidence 44555554 68888888764322 4444 44578999999988754433
No 140
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.80 E-value=1.1e-08 Score=87.96 Aligned_cols=140 Identities=19% Similarity=0.281 Sum_probs=101.5
Q ss_pred cCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCC-CceeecCChHhHHHHHHHH
Q psy1420 39 LGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQ-FPNQIDIPNPRLRFLEANA 117 (241)
Q Consensus 39 l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~D~s~~~~~~~~~~~ 117 (241)
..++.+.+|||.+.|-|+++ +..+. .+. .++.+|.+++.++.+.-+-
T Consensus 130 V~~~~G~rVLDtC~GLGYtA-------------i~a~~-------------------rGA~~VitvEkdp~VLeLa~lNP 177 (287)
T COG2521 130 VKVKRGERVLDTCTGLGYTA-------------IEALE-------------------RGAIHVITVEKDPNVLELAKLNP 177 (287)
T ss_pred eccccCCEeeeeccCccHHH-------------HHHHH-------------------cCCcEEEEEeeCCCeEEeeccCC
Confidence 34567999999999999999 55554 344 8999999999888765432
Q ss_pred hcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCC--CCCCCceeEEeee---ehhhccccHHHHHHHHH
Q psy1420 118 EELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL--PIESDSYSAYTIA---FGIRNVTRIDKALSEAY 192 (241)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~D~V~~~---~~l~~~~~~~~~l~~~~ 192 (241)
- ..++....++++.+|+.+. .+.+.+||+|+.- +++..--=...+-++++
T Consensus 178 w-------------------------Sr~l~~~~i~iilGD~~e~V~~~~D~sfDaIiHDPPRfS~AgeLYseefY~El~ 232 (287)
T COG2521 178 W-------------------------SRELFEIAIKIILGDAYEVVKDFDDESFDAIIHDPPRFSLAGELYSEEFYRELY 232 (287)
T ss_pred C-------------------------CccccccccEEecccHHHHHhcCCccccceEeeCCCccchhhhHhHHHHHHHHH
Confidence 2 2233324678899997765 3667789999832 11111001257889999
Q ss_pred HhccCCcEEEEEecCH----------HHHHHHHHHCCCceEEEEEecCceeEE
Q psy1420 193 RVLKPGGRFLCLEFSH----------EEFKSMIESAGFQYVTYENLTFGVVAI 235 (241)
Q Consensus 193 ~~LkpgG~l~i~~~~~----------~~~~~~l~~~Gf~~~~~~~~~~~~~~~ 235 (241)
|+|||||+++-..-.+ ..+.+.|+++||..++......|+.+.
T Consensus 233 RiLkrgGrlFHYvG~Pg~ryrG~d~~~gVa~RLr~vGF~~v~~~~~~~gv~A~ 285 (287)
T COG2521 233 RILKRGGRLFHYVGNPGKRYRGLDLPKGVAERLRRVGFEVVKKVREALGVVAV 285 (287)
T ss_pred HHcCcCCcEEEEeCCCCcccccCChhHHHHHHHHhcCceeeeeehhccceEEe
Confidence 9999999999765333 889999999999998888777787654
No 141
>PRK03612 spermidine synthase; Provisional
Probab=98.79 E-value=3.8e-08 Score=94.63 Aligned_cols=130 Identities=13% Similarity=0.173 Sum_probs=88.6
Q ss_pred CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCC
Q psy1420 42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP 121 (241)
Q Consensus 42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~ 121 (241)
+++.+|||+|||+|..+ ..++. . ....+++++|+++.+++.++++.. ++
T Consensus 296 ~~~~rVL~IG~G~G~~~-------------~~ll~--------~---------~~v~~v~~VEid~~vi~~ar~~~~-l~ 344 (521)
T PRK03612 296 ARPRRVLVLGGGDGLAL-------------REVLK--------Y---------PDVEQVTLVDLDPAMTELARTSPA-LR 344 (521)
T ss_pred CCCCeEEEEcCCccHHH-------------HHHHh--------C---------CCcCeEEEEECCHHHHHHHHhCCc-ch
Confidence 34568999999999987 44433 1 023689999999999999997421 00
Q ss_pred CccccccccceecceeeeeeccccCCCCCCeeEEecccCCC-CCCCCceeEEeeeehhhcccc-----HHHHHHHHHHhc
Q psy1420 122 IESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL-PIESDSYSAYTIAFGIRNVTR-----IDKALSEAYRVL 195 (241)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~D~V~~~~~l~~~~~-----~~~~l~~~~~~L 195 (241)
.........++++++..|.... ....++||+|++...-...+. ...+++.+.+.|
T Consensus 345 -------------------~~~~~~~~dprv~vi~~Da~~~l~~~~~~fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L 405 (521)
T PRK03612 345 -------------------ALNGGALDDPRVTVVNDDAFNWLRKLAEKFDVIIVDLPDPSNPALGKLYSVEFYRLLKRRL 405 (521)
T ss_pred -------------------hhhccccCCCceEEEEChHHHHHHhCCCCCCEEEEeCCCCCCcchhccchHHHHHHHHHhc
Confidence 0001122335789999997763 223468999998754332222 136889999999
Q ss_pred cCCcEEEEEecCH-------HHHHHHHHHCCCc
Q psy1420 196 KPGGRFLCLEFSH-------EEFKSMIESAGFQ 221 (241)
Q Consensus 196 kpgG~l~i~~~~~-------~~~~~~l~~~Gf~ 221 (241)
||||.+++...++ .++.+.+++.||.
T Consensus 406 ~pgG~lv~~~~~~~~~~~~~~~i~~~l~~~gf~ 438 (521)
T PRK03612 406 APDGLLVVQSTSPYFAPKAFWSIEATLEAAGLA 438 (521)
T ss_pred CCCeEEEEecCCcccchHHHHHHHHHHHHcCCE
Confidence 9999998854322 6788889999993
No 142
>PRK04457 spermidine synthase; Provisional
Probab=98.78 E-value=1.5e-07 Score=82.98 Aligned_cols=111 Identities=14% Similarity=0.140 Sum_probs=77.1
Q ss_pred CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCC
Q psy1420 42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP 121 (241)
Q Consensus 42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~ 121 (241)
.++.+|||+|||+|..+ ..+.. . .+..+++++|+++.+++.+++.+.
T Consensus 65 ~~~~~vL~IG~G~G~l~-------------~~l~~----~-------------~p~~~v~~VEidp~vi~~A~~~f~--- 111 (262)
T PRK04457 65 PRPQHILQIGLGGGSLA-------------KFIYT----Y-------------LPDTRQTAVEINPQVIAVARNHFE--- 111 (262)
T ss_pred CCCCEEEEECCCHhHHH-------------HHHHH----h-------------CCCCeEEEEECCHHHHHHHHHHcC---
Confidence 34568999999999988 32222 0 035689999999999999998765
Q ss_pred CccccccccceecceeeeeeccccCCCCCCeeEEecccCCC-CCCCCceeEEeeeehh-hccc---cHHHHHHHHHHhcc
Q psy1420 122 IESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL-PIESDSYSAYTIAFGI-RNVT---RIDKALSEAYRVLK 196 (241)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~D~V~~~~~l-~~~~---~~~~~l~~~~~~Lk 196 (241)
..... ++++++.+|+... +...++||+|++...- ...+ ....+++.+.++|+
T Consensus 112 ----------------------~~~~~-~rv~v~~~Da~~~l~~~~~~yD~I~~D~~~~~~~~~~l~t~efl~~~~~~L~ 168 (262)
T PRK04457 112 ----------------------LPENG-ERFEVIEADGAEYIAVHRHSTDVILVDGFDGEGIIDALCTQPFFDDCRNALS 168 (262)
T ss_pred ----------------------CCCCC-CceEEEECCHHHHHHhCCCCCCEEEEeCCCCCCCccccCcHHHHHHHHHhcC
Confidence 22221 4788999997543 2223589999975311 1111 13689999999999
Q ss_pred CCcEEEEEecCH
Q psy1420 197 PGGRFLCLEFSH 208 (241)
Q Consensus 197 pgG~l~i~~~~~ 208 (241)
|||++++..+..
T Consensus 169 pgGvlvin~~~~ 180 (262)
T PRK04457 169 SDGIFVVNLWSR 180 (262)
T ss_pred CCcEEEEEcCCC
Confidence 999999854433
No 143
>PRK00811 spermidine synthase; Provisional
Probab=98.77 E-value=3.6e-08 Score=87.78 Aligned_cols=130 Identities=13% Similarity=0.171 Sum_probs=85.8
Q ss_pred CCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCC
Q psy1420 43 HDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPI 122 (241)
Q Consensus 43 ~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~ 122 (241)
.+.+||++|||+|..+ ..++. . ....+++++|+++.+++.+++.+..+
T Consensus 76 ~p~~VL~iG~G~G~~~-------------~~~l~--------~---------~~~~~V~~VEid~~vv~~a~~~~~~~-- 123 (283)
T PRK00811 76 NPKRVLIIGGGDGGTL-------------REVLK--------H---------PSVEKITLVEIDERVVEVCRKYLPEI-- 123 (283)
T ss_pred CCCEEEEEecCchHHH-------------HHHHc--------C---------CCCCEEEEEeCCHHHHHHHHHHhHHh--
Confidence 4568999999999988 44433 1 02457999999999999999876511
Q ss_pred ccccccccceecceeeeeeccccCC-CCCCeeEEecccCCC-CCCCCceeEEeeeehhhcccc----HHHHHHHHHHhcc
Q psy1420 123 ESDSYSAYTIAFGIRNVTRIDKIDI-PNPRLRFLEANAEEL-PIESDSYSAYTIAFGIRNVTR----IDKALSEAYRVLK 196 (241)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~~~-~~~~~~~D~V~~~~~l~~~~~----~~~~l~~~~~~Lk 196 (241)
..+. ..++++++.+|+... +...++||+|++...-...+. ...+++.+++.|+
T Consensus 124 ---------------------~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~ 182 (283)
T PRK00811 124 ---------------------AGGAYDDPRVELVIGDGIKFVAETENSFDVIIVDSTDPVGPAEGLFTKEFYENCKRALK 182 (283)
T ss_pred ---------------------ccccccCCceEEEECchHHHHhhCCCcccEEEECCCCCCCchhhhhHHHHHHHHHHhcC
Confidence 1111 235789999997653 223568999998543222111 2577899999999
Q ss_pred CCcEEEEEecCH-------HHHHHHHHHCCCceEEEE
Q psy1420 197 PGGRFLCLEFSH-------EEFKSMIESAGFQYVTYE 226 (241)
Q Consensus 197 pgG~l~i~~~~~-------~~~~~~l~~~Gf~~~~~~ 226 (241)
|||++++...+. ..+.+.+++. |..+...
T Consensus 183 ~gGvlv~~~~~~~~~~~~~~~i~~tl~~~-F~~v~~~ 218 (283)
T PRK00811 183 EDGIFVAQSGSPFYQADEIKDMHRKLKEV-FPIVRPY 218 (283)
T ss_pred CCcEEEEeCCCcccCHHHHHHHHHHHHHH-CCCEEEE
Confidence 999988753222 3344445555 5555443
No 144
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.76 E-value=7e-08 Score=79.20 Aligned_cols=108 Identities=9% Similarity=0.034 Sum_probs=77.5
Q ss_pred HHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHH
Q psy1420 33 DIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRF 112 (241)
Q Consensus 33 ~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~ 112 (241)
+.+.+.++..++.+|||+|||+|..+ ..++. ...+++++|+++.+++.
T Consensus 3 ~~i~~~~~~~~~~~vLEiG~G~G~lt-------------~~l~~-------------------~~~~v~~vE~~~~~~~~ 50 (169)
T smart00650 3 DKIVRAANLRPGDTVLEIGPGKGALT-------------EELLE-------------------RAARVTAIEIDPRLAPR 50 (169)
T ss_pred HHHHHhcCCCCcCEEEEECCCccHHH-------------HHHHh-------------------cCCeEEEEECCHHHHHH
Confidence 45666777778889999999999998 54444 34679999999999999
Q ss_pred HHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHHHHH
Q psy1420 113 LEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAY 192 (241)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~~~ 192 (241)
+++++. . .++++++.+|+...+.+..++|.|+++.-.+.. ...+..+.
T Consensus 51 ~~~~~~-------------------------~----~~~v~ii~~D~~~~~~~~~~~d~vi~n~Py~~~---~~~i~~~l 98 (169)
T smart00650 51 LREKFA-------------------------A----ADNLTVIHGDALKFDLPKLQPYKVVGNLPYNIS---TPILFKLL 98 (169)
T ss_pred HHHHhc-------------------------c----CCCEEEEECchhcCCccccCCCEEEECCCcccH---HHHHHHHH
Confidence 988775 2 136889999999887766679999887554421 23333333
Q ss_pred Hh--ccCCcEEEEE
Q psy1420 193 RV--LKPGGRFLCL 204 (241)
Q Consensus 193 ~~--LkpgG~l~i~ 204 (241)
+. +.++|.+++.
T Consensus 99 ~~~~~~~~~~l~~q 112 (169)
T smart00650 99 EEPPAFRDAVLMVQ 112 (169)
T ss_pred hcCCCcceEEEEEE
Confidence 32 3467777653
No 145
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=98.75 E-value=4.1e-08 Score=85.17 Aligned_cols=104 Identities=11% Similarity=0.059 Sum_probs=78.6
Q ss_pred CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCC
Q psy1420 42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP 121 (241)
Q Consensus 42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~ 121 (241)
.++.+|||+|||+|..+ ..++..++ ...+++++|+++.+.+.+++++.
T Consensus 67 ~~~~~vLEiGt~~G~s~-------------l~la~~~~----------------~~g~v~tiD~d~~~~~~A~~n~~--- 114 (234)
T PLN02781 67 MNAKNTLEIGVFTGYSL-------------LTTALALP----------------EDGRITAIDIDKEAYEVGLEFIK--- 114 (234)
T ss_pred hCCCEEEEecCcccHHH-------------HHHHHhCC----------------CCCEEEEEECCHHHHHHHHHHHH---
Confidence 45679999999999876 32322110 35689999999999999999998
Q ss_pred CccccccccceecceeeeeeccccCCCCCCeeEEecccCCC-C-----CCCCceeEEeeeehhhccccHHHHHHHHHHhc
Q psy1420 122 IESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL-P-----IESDSYSAYTIAFGIRNVTRIDKALSEAYRVL 195 (241)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~-----~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~L 195 (241)
+.++. .+++++.+|+.+. + .+.++||+|++... -+.+...+..+.++|
T Consensus 115 ----------------------~~gl~-~~i~~~~gda~~~L~~l~~~~~~~~fD~VfiDa~---k~~y~~~~~~~~~ll 168 (234)
T PLN02781 115 ----------------------KAGVD-HKINFIQSDALSALDQLLNNDPKPEFDFAFVDAD---KPNYVHFHEQLLKLV 168 (234)
T ss_pred ----------------------HcCCC-CcEEEEEccHHHHHHHHHhCCCCCCCCEEEECCC---HHHHHHHHHHHHHhc
Confidence 77776 6789999998653 1 11468999987432 134567888999999
Q ss_pred cCCcEEEE
Q psy1420 196 KPGGRFLC 203 (241)
Q Consensus 196 kpgG~l~i 203 (241)
+|||.+++
T Consensus 169 ~~GG~ii~ 176 (234)
T PLN02781 169 KVGGIIAF 176 (234)
T ss_pred CCCeEEEE
Confidence 99999886
No 146
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.73 E-value=6.3e-08 Score=81.81 Aligned_cols=121 Identities=25% Similarity=0.279 Sum_probs=86.1
Q ss_pred eEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCCccc
Q psy1420 46 KLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIESD 125 (241)
Q Consensus 46 ~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~ 125 (241)
.+||+|||.|.+. ..++. . .+...++|+|+....+..+.+++.
T Consensus 20 l~lEIG~G~G~~l-------------~~~A~-------~----------~Pd~n~iGiE~~~~~v~~a~~~~~------- 62 (195)
T PF02390_consen 20 LILEIGCGKGEFL-------------IELAK-------R----------NPDINFIGIEIRKKRVAKALRKAE------- 62 (195)
T ss_dssp EEEEET-TTSHHH-------------HHHHH-------H----------STTSEEEEEES-HHHHHHHHHHHH-------
T ss_pred eEEEecCCCCHHH-------------HHHHH-------H----------CCCCCEEEEecchHHHHHHHHHHH-------
Confidence 8999999999988 44433 1 256789999999999999998888
Q ss_pred cccccceecceeeeeeccccCCCCCCeeEEecccCCC-C--CCCCceeEEeeeehhhccc-----c---HHHHHHHHHHh
Q psy1420 126 SYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL-P--IESDSYSAYTIAFGIRNVT-----R---IDKALSEAYRV 194 (241)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~--~~~~~~D~V~~~~~l~~~~-----~---~~~~l~~~~~~ 194 (241)
+.+++ ++.++++|+... + .+++++|.|...+.=-+.. . -..+++.+.++
T Consensus 63 ------------------~~~l~--Nv~~~~~da~~~l~~~~~~~~v~~i~i~FPDPWpK~rH~krRl~~~~fl~~~~~~ 122 (195)
T PF02390_consen 63 ------------------KRGLK--NVRFLRGDARELLRRLFPPGSVDRIYINFPDPWPKKRHHKRRLVNPEFLELLARV 122 (195)
T ss_dssp ------------------HHTTS--SEEEEES-CTTHHHHHSTTTSEEEEEEES-----SGGGGGGSTTSHHHHHHHHHH
T ss_pred ------------------hhccc--ceEEEEccHHHHHhhcccCCchheEEEeCCCCCcccchhhhhcCCchHHHHHHHH
Confidence 56665 899999998873 2 3457899998755322111 1 16899999999
Q ss_pred ccCCcEEEEEecCH---HHHHHHHHHC--CCceE
Q psy1420 195 LKPGGRFLCLEFSH---EEFKSMIESA--GFQYV 223 (241)
Q Consensus 195 LkpgG~l~i~~~~~---~~~~~~l~~~--Gf~~~ 223 (241)
|+|||.+.+.+=.. +.+.+.+++. +|...
T Consensus 123 L~~gG~l~~~TD~~~y~~~~~~~~~~~~~~f~~~ 156 (195)
T PF02390_consen 123 LKPGGELYFATDVEEYAEWMLEQFEESHPGFENI 156 (195)
T ss_dssp EEEEEEEEEEES-HHHHHHHHHHHHHHSTTEEEE
T ss_pred cCCCCEEEEEeCCHHHHHHHHHHHHhcCcCeEEc
Confidence 99999999876555 6666666663 67755
No 147
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.72 E-value=1.8e-08 Score=89.85 Aligned_cols=139 Identities=14% Similarity=0.119 Sum_probs=88.2
Q ss_pred CCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCC-
Q psy1420 43 HDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP- 121 (241)
Q Consensus 43 ~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~- 121 (241)
+..+|+..||+||... |+..++ +.+..... ....+++|+|+++.+++.|++......
T Consensus 115 ~~irIWSAgCStGEEp-----------YSlAml--l~e~~~~~---------~~~~~I~atDIs~~aL~~Ar~G~Y~~~~ 172 (287)
T PRK10611 115 GEYRVWSAAASTGEEP-----------YSIAMT--LADTLGTA---------PGRWKVFASDIDTEVLEKARSGIYRQEE 172 (287)
T ss_pred CCEEEEEccccCCHHH-----------HHHHHH--HHHhhccc---------CCCcEEEEEECCHHHHHHHHhCCCCHHH
Confidence 3479999999999987 545442 22211111 124579999999999999988654110
Q ss_pred Cccccccccceecce-----eeeeeccccCCCCCCeeEEecccCCCCCC-CCceeEEeeeehhhccc--cHHHHHHHHHH
Q psy1420 122 IESDSYSAYTIAFGI-----RNVTRIDKIDIPNPRLRFLEANAEELPIE-SDSYSAYTIAFGIRNVT--RIDKALSEAYR 193 (241)
Q Consensus 122 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~D~V~~~~~l~~~~--~~~~~l~~~~~ 193 (241)
...-+..+..-.|.- .+.... +..+. ..+.|...|+...+++ .+.||+|+|.+++.++. ...++++.+++
T Consensus 173 ~r~~p~~~~~ryF~~~~~~~~~~~~v-~~~lr-~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~ 250 (287)
T PRK10611 173 LKTLSPQQLQRYFMRGTGPHEGLVRV-RQELA-NYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVP 250 (287)
T ss_pred HhcCCHHHHHHHcccccCCCCceEEE-ChHHH-ccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHH
Confidence 000000011111110 011111 22233 4789999998875543 57899999999998885 46799999999
Q ss_pred hccCCcEEEEEe
Q psy1420 194 VLKPGGRFLCLE 205 (241)
Q Consensus 194 ~LkpgG~l~i~~ 205 (241)
.|+|||+|++..
T Consensus 251 ~L~pgG~L~lG~ 262 (287)
T PRK10611 251 LLKPDGLLFAGH 262 (287)
T ss_pred HhCCCcEEEEeC
Confidence 999999988743
No 148
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=98.71 E-value=2.2e-07 Score=86.51 Aligned_cols=124 Identities=16% Similarity=0.195 Sum_probs=84.8
Q ss_pred CCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCC
Q psy1420 43 HDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPI 122 (241)
Q Consensus 43 ~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~ 122 (241)
++.+|||+|||+|.++ ...+. ....+++++|.++.+++.+++++.
T Consensus 220 ~g~rVLDlfsgtG~~~-------------l~aa~------------------~ga~~V~~VD~s~~al~~a~~N~~---- 264 (396)
T PRK15128 220 ENKRVLNCFSYTGGFA-------------VSALM------------------GGCSQVVSVDTSQEALDIARQNVE---- 264 (396)
T ss_pred CCCeEEEeccCCCHHH-------------HHHHh------------------CCCCEEEEEECCHHHHHHHHHHHH----
Confidence 5679999999999987 32221 023479999999999999999988
Q ss_pred ccccccccceecceeeeeeccccCCCCCCeeEEecccCCCC----CCCCceeEEeeeehh--h-------ccccHHHHHH
Q psy1420 123 ESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELP----IESDSYSAYTIAFGI--R-------NVTRIDKALS 189 (241)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~~D~V~~~~~l--~-------~~~~~~~~l~ 189 (241)
..++...+++++++|+.+.- ...++||+|++.--- . ...+....+.
T Consensus 265 ---------------------~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVilDPP~f~~~k~~l~~~~~~y~~l~~ 323 (396)
T PRK15128 265 ---------------------LNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVMDPPKFVENKSQLMGACRGYKDINM 323 (396)
T ss_pred ---------------------HcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEEECCCCCCCChHHHHHHHHHHHHHHH
Confidence 55654236889999987641 124589999976221 0 1123455666
Q ss_pred HHHHhccCCcEEEEEecCH----HHHHHHH----HHCCCce
Q psy1420 190 EAYRVLKPGGRFLCLEFSH----EEFKSMI----ESAGFQY 222 (241)
Q Consensus 190 ~~~~~LkpgG~l~i~~~~~----~~~~~~l----~~~Gf~~ 222 (241)
.+.++|+|||.++..+.+. +.+.+++ .++|-+.
T Consensus 324 ~a~~lLk~gG~lv~~scs~~~~~~~f~~~v~~aa~~~~~~~ 364 (396)
T PRK15128 324 LAIQLLNPGGILLTFSCSGLMTSDLFQKIIADAAIDAGRDV 364 (396)
T ss_pred HHHHHcCCCeEEEEEeCCCcCCHHHHHHHHHHHHHHcCCeE
Confidence 7889999999998766543 4454444 4555443
No 149
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.67 E-value=1.5e-07 Score=83.20 Aligned_cols=141 Identities=13% Similarity=0.016 Sum_probs=91.3
Q ss_pred CCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcC--
Q psy1420 43 HDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEEL-- 120 (241)
Q Consensus 43 ~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~-- 120 (241)
...+|+..||+||... |+..++ +.+...... ....+++++|++...++.|+......
T Consensus 96 ~~irIWSaaCStGEEp-----------YSiAm~--l~e~~~~~~--------~~~~~I~AtDId~~~L~~A~~G~Y~~~~ 154 (268)
T COG1352 96 RPIRIWSAACSTGEEP-----------YSLAML--LLEALGKLA--------GFRVKILATDIDLSVLEKARAGIYPSRE 154 (268)
T ss_pred CceEEEecCcCCCccH-----------HHHHHH--HHHHhcccc--------CCceEEEEEECCHHHHHHHhcCCCChhH
Confidence 3679999999999988 555542 222221110 13678999999999999998765510
Q ss_pred CCccccccc-cceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccH--HHHHHHHHHhccC
Q psy1420 121 PIESDSYSA-YTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRI--DKALSEAYRVLKP 197 (241)
Q Consensus 121 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~--~~~l~~~~~~Lkp 197 (241)
-...-+.++ +.+.....+..-..+..+. ..+.|.+.|....+...+.||+|+|-+++-.+..+ .++++..+..|+|
T Consensus 155 ~~~~~~~~~~~ryF~~~~~~~y~v~~~ir-~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~ 233 (268)
T COG1352 155 LLRGLPPELLRRYFERGGDGSYRVKEELR-KMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKP 233 (268)
T ss_pred hhccCCHHHHhhhEeecCCCcEEEChHHh-cccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCC
Confidence 000111111 1222122111111122222 47889999988776456789999999999887654 6999999999999
Q ss_pred CcEEEEEe
Q psy1420 198 GGRFLCLE 205 (241)
Q Consensus 198 gG~l~i~~ 205 (241)
||+|++-.
T Consensus 234 gG~LflG~ 241 (268)
T COG1352 234 GGLLFLGH 241 (268)
T ss_pred CCEEEEcc
Confidence 99999853
No 150
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.66 E-value=4e-07 Score=80.48 Aligned_cols=129 Identities=14% Similarity=0.173 Sum_probs=82.6
Q ss_pred CCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCCc
Q psy1420 44 DTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIE 123 (241)
Q Consensus 44 ~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~ 123 (241)
+.+||++|||+|..+ ..++. . ....+++++|+++.+++.+++....+
T Consensus 73 p~~VL~iG~G~G~~~-------------~~ll~----~-------------~~~~~v~~veid~~vi~~a~~~~~~~--- 119 (270)
T TIGR00417 73 PKHVLVIGGGDGGVL-------------REVLK----H-------------KSVEKATLVDIDEKVIELSKKFLPSL--- 119 (270)
T ss_pred CCEEEEEcCCchHHH-------------HHHHh----C-------------CCcceEEEEeCCHHHHHHHHHHhHhh---
Confidence 449999999999877 44433 0 02457999999999999998876411
Q ss_pred cccccccceecceeeeeeccccCCCCCCeeEEecccCCC-CCCCCceeEEeeeehhhccc--c--HHHHHHHHHHhccCC
Q psy1420 124 SDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL-PIESDSYSAYTIAFGIRNVT--R--IDKALSEAYRVLKPG 198 (241)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~D~V~~~~~l~~~~--~--~~~~l~~~~~~Lkpg 198 (241)
......+++++...|.... ....++||+|++...-...+ . ...+++.+.+.|+||
T Consensus 120 --------------------~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~D~~~~~~~~~~l~~~ef~~~~~~~L~pg 179 (270)
T TIGR00417 120 --------------------AGSYDDPRVDLQIDDGFKFLADTENTFDVIIVDSTDPVGPAETLFTKEFYELLKKALNED 179 (270)
T ss_pred --------------------cccccCCceEEEECchHHHHHhCCCCccEEEEeCCCCCCcccchhHHHHHHHHHHHhCCC
Confidence 0112224677777776442 22246899999865422111 1 357889999999999
Q ss_pred cEEEEEecCH----H---HHHHHHHHCCCceEEEE
Q psy1420 199 GRFLCLEFSH----E---EFKSMIESAGFQYVTYE 226 (241)
Q Consensus 199 G~l~i~~~~~----~---~~~~~l~~~Gf~~~~~~ 226 (241)
|.+++...+. + .+...+++. |..+...
T Consensus 180 G~lv~~~~~~~~~~~~~~~~~~tl~~~-F~~v~~~ 213 (270)
T TIGR00417 180 GIFVAQSESPWIQLELITDLKRDVKEA-FPITEYY 213 (270)
T ss_pred cEEEEcCCCcccCHHHHHHHHHHHHHH-CCCeEEE
Confidence 9998864332 3 333344455 6655443
No 151
>KOG1975|consensus
Probab=98.65 E-value=1.7e-07 Score=83.96 Aligned_cols=133 Identities=15% Similarity=0.178 Sum_probs=91.9
Q ss_pred HHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHH
Q psy1420 33 DIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRF 112 (241)
Q Consensus 33 ~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~ 112 (241)
..+++... +++..++++|||.|.-. +.+-. ..-..++|+|+++..++.
T Consensus 108 s~LI~~y~-~~~~~~~~LgCGKGGDL-------------lKw~k------------------AgI~~~igiDIAevSI~q 155 (389)
T KOG1975|consen 108 SVLINLYT-KRGDDVLDLGCGKGGDL-------------LKWDK------------------AGIGEYIGIDIAEVSINQ 155 (389)
T ss_pred HHHHHHHh-ccccccceeccCCcccH-------------hHhhh------------------hcccceEeeehhhccHHH
Confidence 33444433 56778999999999876 44432 135689999999999999
Q ss_pred HHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCC------CCCCCceeEEeeeehhhc-cc---
Q psy1420 113 LEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL------PIESDSYSAYTIAFGIRN-VT--- 182 (241)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~------~~~~~~~D~V~~~~~l~~-~~--- 182 (241)
|+++...+. +-+. +.-+ ...|+.+|-... +..+.+||+|-|.+++|. +.
T Consensus 156 a~~RYrdm~----------------~r~~--~~~f---~a~f~~~Dc~~~~l~d~~e~~dp~fDivScQF~~HYaFetee 214 (389)
T KOG1975|consen 156 ARKRYRDMK----------------NRFK--KFIF---TAVFIAADCFKERLMDLLEFKDPRFDIVSCQFAFHYAFETEE 214 (389)
T ss_pred HHHHHHHHH----------------hhhh--cccc---eeEEEEeccchhHHHHhccCCCCCcceeeeeeeEeeeeccHH
Confidence 998876321 1111 1111 356777774432 222334999999999985 44
Q ss_pred cHHHHHHHHHHhccCCcEEEEEecCHHHHHHHHHHC
Q psy1420 183 RIDKALSEAYRVLKPGGRFLCLEFSHEEFKSMIESA 218 (241)
Q Consensus 183 ~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~l~~~ 218 (241)
....+|.++.++|+|||+++-.......+..-+++.
T Consensus 215 ~ar~~l~Nva~~LkpGG~FIgTiPdsd~Ii~rlr~~ 250 (389)
T KOG1975|consen 215 SARIALRNVAKCLKPGGVFIGTIPDSDVIIKRLRAG 250 (389)
T ss_pred HHHHHHHHHHhhcCCCcEEEEecCcHHHHHHHHHhc
Confidence 346889999999999999998877777776666665
No 152
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=98.64 E-value=2.8e-07 Score=83.18 Aligned_cols=133 Identities=9% Similarity=0.126 Sum_probs=88.1
Q ss_pred HHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHH
Q psy1420 34 IFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFL 113 (241)
Q Consensus 34 ~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~ 113 (241)
.+.+.+...++.+|||+|||+|..+ ..++. ....++++|+++.+++.+
T Consensus 164 ~v~~~l~~~~~~~VLDl~cG~G~~s-------------l~la~-------------------~~~~V~gvD~s~~av~~A 211 (315)
T PRK03522 164 TARDWVRELPPRSMWDLFCGVGGFG-------------LHCAT-------------------PGMQLTGIEISAEAIACA 211 (315)
T ss_pred HHHHHHHhcCCCEEEEccCCCCHHH-------------HHHHh-------------------cCCEEEEEeCCHHHHHHH
Confidence 3334444345679999999999988 44433 346899999999999999
Q ss_pred HHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCC-CCCceeEEeeeehhhccccHHHHHHHHH
Q psy1420 114 EANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPI-ESDSYSAYTIAFGIRNVTRIDKALSEAY 192 (241)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~D~V~~~~~l~~~~~~~~~l~~~~ 192 (241)
++++. ..++. ++++.++|+..... ..+.||+|++.--- . ...+.+..+.
T Consensus 212 ~~n~~-------------------------~~~l~--~v~~~~~D~~~~~~~~~~~~D~Vv~dPPr-~--G~~~~~~~~l 261 (315)
T PRK03522 212 KQSAA-------------------------ELGLT--NVQFQALDSTQFATAQGEVPDLVLVNPPR-R--GIGKELCDYL 261 (315)
T ss_pred HHHHH-------------------------HcCCC--ceEEEEcCHHHHHHhcCCCCeEEEECCCC-C--CccHHHHHHH
Confidence 99987 55553 68899999876532 23479999975221 0 1112222333
Q ss_pred HhccCCcEEEEEecCH---HHHHHHHHHCCCceEEEEEecCc
Q psy1420 193 RVLKPGGRFLCLEFSH---EEFKSMIESAGFQYVTYENLTFG 231 (241)
Q Consensus 193 ~~LkpgG~l~i~~~~~---~~~~~~l~~~Gf~~~~~~~~~~~ 231 (241)
..++|++.++++.-.. ++++.+ .||++.++..+.+-
T Consensus 262 ~~~~~~~ivyvsc~p~t~~rd~~~l---~~y~~~~~~~~DmF 300 (315)
T PRK03522 262 SQMAPRFILYSSCNAQTMAKDLAHL---PGYRIERVQLFDMF 300 (315)
T ss_pred HHcCCCeEEEEECCcccchhHHhhc---cCcEEEEEEEeccC
Confidence 3467888777754333 555554 68999888877543
No 153
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.63 E-value=1.7e-07 Score=78.02 Aligned_cols=150 Identities=21% Similarity=0.226 Sum_probs=96.4
Q ss_pred HHHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHh
Q psy1420 30 LWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPR 109 (241)
Q Consensus 30 ~~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~ 109 (241)
.....|+....++++..++|.-||+|+.. ...+- +.....+ .+ ......++|.|+++.+
T Consensus 15 ~lA~~ll~la~~~~~~~vlDP~CGsGtil-------------iEaa~-----~~~~~~~-~~--~~~~~~~~g~Di~~~~ 73 (179)
T PF01170_consen 15 TLAAALLNLAGWRPGDVVLDPFCGSGTIL-------------IEAAL-----MGANIPP-LN--DINELKIIGSDIDPKA 73 (179)
T ss_dssp HHHHHHHHHTT--TTS-EEETT-TTSHHH-------------HHHHH-----HHTTTST-TT--H-CH--EEEEESSHHH
T ss_pred HHHHHHHHHhCCCCCCEEeecCCCCCHHH-------------HHHHH-----HhhCccc-cc--ccccccEEecCCCHHH
Confidence 34556677777888999999999999987 43322 1111000 00 0001238899999999
Q ss_pred HHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeee--ehhhccc-----
Q psy1420 110 LRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIA--FGIRNVT----- 182 (241)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~--~~l~~~~----- 182 (241)
++.++.++. ..++. ..+.+...|+..++...+++|.|+++ ++.+.-.
T Consensus 74 v~~a~~N~~-------------------------~ag~~-~~i~~~~~D~~~l~~~~~~~d~IvtnPPyG~r~~~~~~~~ 127 (179)
T PF01170_consen 74 VRGARENLK-------------------------AAGVE-DYIDFIQWDARELPLPDGSVDAIVTNPPYGRRLGSKKDLE 127 (179)
T ss_dssp HHHHHHHHH-------------------------HTT-C-GGEEEEE--GGGGGGTTSBSCEEEEE--STTSHCHHHHHH
T ss_pred HHHHHHHHH-------------------------hcccC-CceEEEecchhhcccccCCCCEEEECcchhhhccCHHHHH
Confidence 999999998 66665 56889999999998667899999987 3443211
Q ss_pred -cHHHHHHHHHHhccCCcEEEEEecCHHHHHHHHHHCCCceEEEEEe
Q psy1420 183 -RIDKALSEAYRVLKPGGRFLCLEFSHEEFKSMIESAGFQYVTYENL 228 (241)
Q Consensus 183 -~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~l~~~Gf~~~~~~~~ 228 (241)
-...+++++.+++++ +.+++......+.+.+...+++.....+.
T Consensus 128 ~ly~~~~~~~~~~l~~--~~v~l~~~~~~~~~~~~~~~~~~~~~~~~ 172 (179)
T PF01170_consen 128 KLYRQFLRELKRVLKP--RAVFLTTSNRELEKALGLKGWRKRKLYNG 172 (179)
T ss_dssp HHHHHHHHHHHCHSTT--CEEEEEESCCCHHHHHTSTTSEEEEEEET
T ss_pred HHHHHHHHHHHHHCCC--CEEEEEECCHHHHHHhcchhhceEEEEEe
Confidence 125778889999998 33333445567888888887776655544
No 154
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.60 E-value=4.3e-07 Score=85.22 Aligned_cols=137 Identities=13% Similarity=0.123 Sum_probs=92.7
Q ss_pred HHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHH
Q psy1420 32 KDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLR 111 (241)
Q Consensus 32 ~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~ 111 (241)
.+.+.+.+...++.+|||+|||+|..+ ..++. ....++++|+++.+++
T Consensus 281 ~~~~~~~l~~~~~~~vLDl~cG~G~~s-------------l~la~-------------------~~~~V~~vE~~~~av~ 328 (431)
T TIGR00479 281 VDRALEALELQGEELVVDAYCGVGTFT-------------LPLAK-------------------QAKSVVGIEVVPESVE 328 (431)
T ss_pred HHHHHHHhccCCCCEEEEcCCCcCHHH-------------HHHHH-------------------hCCEEEEEEcCHHHHH
Confidence 345556666667789999999999998 44333 2457999999999999
Q ss_pred HHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCC----CCCCCceeEEeeeehhhccccHHHH
Q psy1420 112 FLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL----PIESDSYSAYTIAFGIRNVTRIDKA 187 (241)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~----~~~~~~~D~V~~~~~l~~~~~~~~~ 187 (241)
.+++++. ..++. +++++.+|+.+. +...++||+|++.-.=. .-...+
T Consensus 329 ~a~~n~~-------------------------~~~~~--nv~~~~~d~~~~l~~~~~~~~~~D~vi~dPPr~--G~~~~~ 379 (431)
T TIGR00479 329 KAQQNAE-------------------------LNGIA--NVEFLAGTLETVLPKQPWAGQIPDVLLLDPPRK--GCAAEV 379 (431)
T ss_pred HHHHHHH-------------------------HhCCC--ceEEEeCCHHHHHHHHHhcCCCCCEEEECcCCC--CCCHHH
Confidence 9999987 44544 688999998652 12345799998632210 112455
Q ss_pred HHHHHHhccCCcEEEEEecCH---HHHHHHHHHCCCceEEEEEecCc
Q psy1420 188 LSEAYRVLKPGGRFLCLEFSH---EEFKSMIESAGFQYVTYENLTFG 231 (241)
Q Consensus 188 l~~~~~~LkpgG~l~i~~~~~---~~~~~~l~~~Gf~~~~~~~~~~~ 231 (241)
++.+.+ ++|++.++++ ..+ ..-...+.+.||++.++..+.+-
T Consensus 380 l~~l~~-l~~~~ivyvs-c~p~tlard~~~l~~~gy~~~~~~~~DmF 424 (431)
T TIGR00479 380 LRTIIE-LKPERIVYVS-CNPATLARDLEFLCKEGYGITWVQPVDMF 424 (431)
T ss_pred HHHHHh-cCCCEEEEEc-CCHHHHHHHHHHHHHCCeeEEEEEEeccC
Confidence 555544 7898877764 333 22244567789998888876543
No 155
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=98.59 E-value=5e-07 Score=79.31 Aligned_cols=126 Identities=14% Similarity=0.188 Sum_probs=85.6
Q ss_pred cCCCceeecCChHhHHHHHHHHhcCCCccccccccceecceeeeeecccc-------CCCCCCe-eEEecccCCCC-CCC
Q psy1420 96 IRQFPNQIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKI-------DIPNPRL-RFLEANAEELP-IES 166 (241)
Q Consensus 96 ~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~-~~~~~d~~~~~-~~~ 166 (241)
....++..|+++.+.+..++.+.. + +.|.|.++..-+..+ .+... .+. ..+ +++.+|+...+ +..
T Consensus 78 ~f~~I~l~dy~~~N~~el~kWl~~---~-~a~DWs~~~~~v~~l-Eg~~~~~~e~e~~lR-~~Vk~Vv~cDV~~~~pl~~ 151 (256)
T PF01234_consen 78 WFEEIVLSDYSEQNREELEKWLRK---E-GAFDWSPFWKYVCEL-EGKREKWEEKEEKLR-RAVKQVVPCDVTQPNPLDP 151 (256)
T ss_dssp TEEEEEEEESSHHHHHHHHHHHTT-----TS--THHHHHHHHHH-TTSSSGHHHHHHHHH-HHEEEEEE--TTSSSTTTT
T ss_pred hhcceEEeeccHhhHHHHHHHHCC---C-CCCCccHHHHHHHhc-cCCcchhhhHHHHHH-HhhceEEEeeccCCCCCCc
Confidence 355799999999999999999872 2 666676665433211 11100 000 112 36778876653 322
Q ss_pred -----CceeEEeeeehhhcc----ccHHHHHHHHHHhccCCcEEEEEecCH------------------HHHHHHHHHCC
Q psy1420 167 -----DSYSAYTIAFGIRNV----TRIDKALSEAYRVLKPGGRFLCLEFSH------------------EEFKSMIESAG 219 (241)
Q Consensus 167 -----~~~D~V~~~~~l~~~----~~~~~~l~~~~~~LkpgG~l~i~~~~~------------------~~~~~~l~~~G 219 (241)
.++|+|++.+++... .....+++++.++|||||.|++...-. +.+++.++++|
T Consensus 152 ~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~Y~vG~~~F~~l~l~ee~v~~al~~aG 231 (256)
T PF01234_consen 152 PVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGSTYYMVGGHKFPCLPLNEEFVREALEEAG 231 (256)
T ss_dssp S-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SEEEETTEEEE---B-HHHHHHHHHHTT
T ss_pred cccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCceeEEECCEecccccCCHHHHHHHHHHcC
Confidence 359999999999753 345799999999999999999865322 88999999999
Q ss_pred CceEEEEE
Q psy1420 220 FQYVTYEN 227 (241)
Q Consensus 220 f~~~~~~~ 227 (241)
|.+.+.+.
T Consensus 232 ~~i~~~~~ 239 (256)
T PF01234_consen 232 FDIEDLEK 239 (256)
T ss_dssp EEEEEEEG
T ss_pred CEEEeccc
Confidence 99998885
No 156
>PLN02366 spermidine synthase
Probab=98.55 E-value=1.5e-06 Score=78.46 Aligned_cols=131 Identities=16% Similarity=0.178 Sum_probs=85.9
Q ss_pred CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCC
Q psy1420 42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP 121 (241)
Q Consensus 42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~ 121 (241)
.++.+||++|||.|..+ ..++. .+ ...+++.+|+++.+++.+++.....
T Consensus 90 ~~pkrVLiIGgG~G~~~-------------rellk--------~~---------~v~~V~~VEiD~~Vi~~ar~~f~~~- 138 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVL-------------REIAR--------HS---------SVEQIDICEIDKMVIDVSKKFFPDL- 138 (308)
T ss_pred CCCCeEEEEcCCccHHH-------------HHHHh--------CC---------CCCeEEEEECCHHHHHHHHHhhhhh-
Confidence 34568999999999987 44433 10 2467999999999999999876511
Q ss_pred CccccccccceecceeeeeeccccCCCCCCeeEEecccCCC-C-CCCCceeEEeeeehhhcccc----HHHHHHHHHHhc
Q psy1420 122 IESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL-P-IESDSYSAYTIAFGIRNVTR----IDKALSEAYRVL 195 (241)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~-~~~~~~D~V~~~~~l~~~~~----~~~~l~~~~~~L 195 (241)
..++.+++++++.+|+... . .+.++||+|++...-...+. -..+++.+.++|
T Consensus 139 ----------------------~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvIi~D~~dp~~~~~~L~t~ef~~~~~~~L 196 (308)
T PLN02366 139 ----------------------AVGFDDPRVNLHIGDGVEFLKNAPEGTYDAIIVDSSDPVGPAQELFEKPFFESVARAL 196 (308)
T ss_pred ----------------------ccccCCCceEEEEChHHHHHhhccCCCCCEEEEcCCCCCCchhhhhHHHHHHHHHHhc
Confidence 1123346899999996542 1 22468999997543322221 247899999999
Q ss_pred cCCcEEEEEecC----H---HHHHHHHHHCCCceEEE
Q psy1420 196 KPGGRFLCLEFS----H---EEFKSMIESAGFQYVTY 225 (241)
Q Consensus 196 kpgG~l~i~~~~----~---~~~~~~l~~~Gf~~~~~ 225 (241)
+|||.++...-+ . ..+.+.+++.....+..
T Consensus 197 ~pgGvlv~q~~s~~~~~~~~~~i~~tl~~~F~~~v~~ 233 (308)
T PLN02366 197 RPGGVVCTQAESMWLHMDLIEDLIAICRETFKGSVNY 233 (308)
T ss_pred CCCcEEEECcCCcccchHHHHHHHHHHHHHCCCceeE
Confidence 999999763322 2 34445555553345544
No 157
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=98.54 E-value=1.4e-06 Score=74.36 Aligned_cols=76 Identities=24% Similarity=0.401 Sum_probs=64.0
Q ss_pred eEEecccCCCCCC---CCceeEEeeeehhhccccHH---HHHHHHHHhccCCcE-----EEEEecCH----------HHH
Q psy1420 153 RFLEANAEELPIE---SDSYSAYTIAFGIRNVTRID---KALSEAYRVLKPGGR-----FLCLEFSH----------EEF 211 (241)
Q Consensus 153 ~~~~~d~~~~~~~---~~~~D~V~~~~~l~~~~~~~---~~l~~~~~~LkpgG~-----l~i~~~~~----------~~~ 211 (241)
.+.+.|+.+.|.+ +++||+|.++.+|..++++. ..+..+++.|+|+|. |+++.... +.|
T Consensus 86 ~I~qqDFm~rplp~~~~e~FdvIs~SLVLNfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~Cv~NSRy~~~~~l 165 (219)
T PF11968_consen 86 GILQQDFMERPLPKNESEKFDVISLSLVLNFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPCVTNSRYMTEERL 165 (219)
T ss_pred CceeeccccCCCCCCcccceeEEEEEEEEeeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCchHhhcccccCHHHH
Confidence 4567888877654 67999999999999999875 889999999999999 88765444 899
Q ss_pred HHHHHHCCCceEEEEEe
Q psy1420 212 KSMIESAGFQYVTYENL 228 (241)
Q Consensus 212 ~~~l~~~Gf~~~~~~~~ 228 (241)
..++++.||..++.+..
T Consensus 166 ~~im~~LGf~~~~~~~~ 182 (219)
T PF11968_consen 166 REIMESLGFTRVKYKKS 182 (219)
T ss_pred HHHHHhCCcEEEEEEec
Confidence 99999999998887654
No 158
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.53 E-value=2.3e-07 Score=87.65 Aligned_cols=140 Identities=19% Similarity=0.274 Sum_probs=88.4
Q ss_pred cchHHHHHhhhhhccccchhhhhhhhHHHHHHHHHhhcCCC----CCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhh
Q psy1420 2 KLPMYEVFENVAKSYDTMNDAMSFGIHRLWKDIFIDRLGPT----HDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPV 77 (241)
Q Consensus 2 ~~~~~~~f~~~~~~yd~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~ 77 (241)
.+..+++|+.=.-+|+...+++. +.+.+..... ++..|+|+|||+|-++ ...+..
T Consensus 149 ~s~tYe~fE~D~vKY~~Ye~AI~--------~al~D~~~~~~~~~~~~vVldVGAGrGpL~-------------~~al~A 207 (448)
T PF05185_consen 149 ESQTYEVFEKDPVKYDQYERAIE--------EALKDRVRKNSYSSKDKVVLDVGAGRGPLS-------------MFALQA 207 (448)
T ss_dssp -HHHHHHHCC-HHHHHHHHHHHH--------HHHHHHHTTS-SEETT-EEEEES-TTSHHH-------------HHHHHT
T ss_pred ccccHhhHhcCHHHHHHHHHHHH--------HHHHhhhhhccccccceEEEEeCCCccHHH-------------HHHHHH
Confidence 34677788777777777654432 2233333322 4678999999999987 333331
Q ss_pred hhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEec
Q psy1420 78 MGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEA 157 (241)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (241)
.++. ....+++++|.++.+...+++.+. ..++. ++++++.+
T Consensus 208 ~~~~-------------~~a~~VyAVEkn~~A~~~l~~~v~-------------------------~n~w~-~~V~vi~~ 248 (448)
T PF05185_consen 208 GARA-------------GGAVKVYAVEKNPNAVVTLQKRVN-------------------------ANGWG-DKVTVIHG 248 (448)
T ss_dssp THHH-------------CCESEEEEEESSTHHHHHHHHHHH-------------------------HTTTT-TTEEEEES
T ss_pred HHHh-------------CCCeEEEEEcCCHhHHHHHHHHHH-------------------------hcCCC-CeEEEEeC
Confidence 1110 024689999999998888776655 55665 68999999
Q ss_pred ccCCCCCCCCceeEEeeeeh--hhccccHHHHHHHHHHhccCCcEEE
Q psy1420 158 NAEELPIESDSYSAYTIAFG--IRNVTRIDKALSEAYRVLKPGGRFL 202 (241)
Q Consensus 158 d~~~~~~~~~~~D~V~~~~~--l~~~~~~~~~l~~~~~~LkpgG~l~ 202 (241)
|+++...+ .++|+|++=.. +-.-+-....|....|.|||||.++
T Consensus 249 d~r~v~lp-ekvDIIVSElLGsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 249 DMREVELP-EKVDIIVSELLGSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp -TTTSCHS-S-EEEEEE---BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred cccCCCCC-CceeEEEEeccCCccccccCHHHHHHHHhhcCCCCEEe
Confidence 99998765 48999996321 1111233457888899999999876
No 159
>KOG2899|consensus
Probab=98.52 E-value=7.6e-07 Score=77.01 Aligned_cols=129 Identities=12% Similarity=0.069 Sum_probs=78.0
Q ss_pred CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcC-
Q psy1420 42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEEL- 120 (241)
Q Consensus 42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~- 120 (241)
..+..+|||||-.|..+ .+++..+| ...+.|+|+++..++.|++.++.-
T Consensus 57 f~~~~~LDIGCNsG~lt-------------~~iak~F~-----------------~r~iLGvDID~~LI~~Ark~~r~~~ 106 (288)
T KOG2899|consen 57 FEPKQALDIGCNSGFLT-------------LSIAKDFG-----------------PRRILGVDIDPVLIQRARKEIRFPC 106 (288)
T ss_pred cCcceeEeccCCcchhH-------------HHHHHhhc-----------------cceeeEeeccHHHHHHHHHhccccc
Confidence 45668999999999999 55555222 346999999999999999886610
Q ss_pred ---------CCccccccccceecceeeeeeccccCCC------CCCeeEEecccCCCCCCCCceeEEeeeehhhc----c
Q psy1420 121 ---------PIESDSYSAYTIAFGIRNVTRIDKIDIP------NPRLRFLEANAEELPIESDSYSAYTIAFGIRN----V 181 (241)
Q Consensus 121 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~----~ 181 (241)
.+.++.+...+|+. -...+......++ ..+..+...|+.. .....||+|+|-.+--+ +
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~is~-~~~a~~a~t~~~p~n~~f~~~n~vle~~dfl~--~~~~~fDiIlcLSiTkWIHLNw 183 (288)
T KOG2899|consen 107 DHETEVSGKFPASFGVQFGPISQ-RNEADRAFTTDFPDNVWFQKENYVLESDDFLD--MIQPEFDIILCLSITKWIHLNW 183 (288)
T ss_pred cccccccCCCccccccccccccc-cccccccccccCCcchhcccccEEEecchhhh--hccccccEEEEEEeeeeEeccc
Confidence 01122223444444 1111111111222 0122222222332 23457999998654332 2
Q ss_pred cc--HHHHHHHHHHhccCCcEEEE
Q psy1420 182 TR--IDKALSEAYRVLKPGGRFLC 203 (241)
Q Consensus 182 ~~--~~~~l~~~~~~LkpgG~l~i 203 (241)
.| +..+++.++++|.|||+|++
T Consensus 184 gD~GL~~ff~kis~ll~pgGiLvv 207 (288)
T KOG2899|consen 184 GDDGLRRFFRKISSLLHPGGILVV 207 (288)
T ss_pred ccHHHHHHHHHHHHhhCcCcEEEE
Confidence 22 57999999999999999987
No 160
>PLN02672 methionine S-methyltransferase
Probab=98.51 E-value=1e-06 Score=90.45 Aligned_cols=142 Identities=15% Similarity=0.194 Sum_probs=88.8
Q ss_pred CCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCCc
Q psy1420 44 DTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIE 123 (241)
Q Consensus 44 ~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~ 123 (241)
+.+|||+|||+|..+ ..++. . ....+++++|+|+.+++.++.++..+-..
T Consensus 119 ~~~VLDlG~GSG~Ia-------------i~La~--------~---------~~~~~v~avDis~~Al~~A~~Na~~n~l~ 168 (1082)
T PLN02672 119 DKTVAELGCGNGWIS-------------IAIAE--------K---------WLPSKVYGLDINPRAVKVAWINLYLNALD 168 (1082)
T ss_pred CCEEEEEecchHHHH-------------HHHHH--------H---------CCCCEEEEEECCHHHHHHHHHHHHHcCcc
Confidence 458999999999988 43333 0 02458999999999999999998721000
Q ss_pred cccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCC-CCceeEEeeee--hhh--------cc-----------
Q psy1420 124 SDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIE-SDSYSAYTIAF--GIR--------NV----------- 181 (241)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~D~V~~~~--~l~--------~~----------- 181 (241)
.+ +...... .+.... .+++++++|+.+.... ..+||+|+++- +.. .+
T Consensus 169 ~~---------~~~~~~~-~~~~l~-~rV~f~~sDl~~~~~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~ 237 (1082)
T PLN02672 169 DD---------GLPVYDG-EGKTLL-DRVEFYESDLLGYCRDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYS 237 (1082)
T ss_pred cc---------ccccccc-cccccc-ccEEEEECchhhhccccCCceEEEEECCCcCCCcchhhcChhhhhccccccccc
Confidence 00 0000000 000111 3688889987654311 13699999762 110 00
Q ss_pred -------------c----cHHHHHHHHHHhccCCcEEEEEecCH---HHHH-HHHHHCCCceEEEEE
Q psy1420 182 -------------T----RIDKALSEAYRVLKPGGRFLCLEFSH---EEFK-SMIESAGFQYVTYEN 227 (241)
Q Consensus 182 -------------~----~~~~~l~~~~~~LkpgG~l~i~~~~~---~~~~-~~l~~~Gf~~~~~~~ 227 (241)
. -+.+++.++.++|+|||.+++ +.+. +.+. +++++.||..++.-.
T Consensus 238 ~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~l-EiG~~q~~~v~~~l~~~~gf~~~~~~~ 303 (1082)
T PLN02672 238 LSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIF-NMGGRPGQAVCERLFERRGFRITKLWQ 303 (1082)
T ss_pred cCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEE-EECccHHHHHHHHHHHHCCCCeeEEee
Confidence 0 125778888899999998876 4443 6777 699999998865543
No 161
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.50 E-value=1.3e-06 Score=79.27 Aligned_cols=138 Identities=22% Similarity=0.257 Sum_probs=103.0
Q ss_pred HHHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHh
Q psy1420 30 LWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPR 109 (241)
Q Consensus 30 ~~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~ 109 (241)
...+.+.++...++|..|||-=||||... +..-- -+..++|.|++..|
T Consensus 184 ~lAR~mVNLa~v~~G~~vlDPFcGTGgiL-------------iEagl-------------------~G~~viG~Did~~m 231 (347)
T COG1041 184 RLARAMVNLARVKRGELVLDPFCGTGGIL-------------IEAGL-------------------MGARVIGSDIDERM 231 (347)
T ss_pred HHHHHHHHHhccccCCEeecCcCCccHHH-------------Hhhhh-------------------cCceEeecchHHHH
Confidence 34566777777789999999999999987 33322 46789999999999
Q ss_pred HHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEec-ccCCCCCCCCceeEEeee--ehhhc---ccc
Q psy1420 110 LRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEA-NAEELPIESDSYSAYTIA--FGIRN---VTR 183 (241)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-d~~~~~~~~~~~D~V~~~--~~l~~---~~~ 183 (241)
++-++.+++ .-++. ...+... |+..+|+++.++|.|++- ++... ...
T Consensus 232 v~gak~Nl~-------------------------~y~i~--~~~~~~~~Da~~lpl~~~~vdaIatDPPYGrst~~~~~~ 284 (347)
T COG1041 232 VRGAKINLE-------------------------YYGIE--DYPVLKVLDATNLPLRDNSVDAIATDPPYGRSTKIKGEG 284 (347)
T ss_pred Hhhhhhhhh-------------------------hhCcC--ceeEEEecccccCCCCCCccceEEecCCCCccccccccc
Confidence 999999988 33333 3434444 999999887789999974 22221 111
Q ss_pred ----HHHHHHHHHHhccCCcEEEEEecCHHHHHHHHHHCCCceEEEEEe
Q psy1420 184 ----IDKALSEAYRVLKPGGRFLCLEFSHEEFKSMIESAGFQYVTYENL 228 (241)
Q Consensus 184 ----~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~l~~~Gf~~~~~~~~ 228 (241)
..++|+.++++||+||++++... ......+++.||.++.....
T Consensus 285 l~~Ly~~~le~~~evLk~gG~~vf~~p--~~~~~~~~~~~f~v~~~~~~ 331 (347)
T COG1041 285 LDELYEEALESASEVLKPGGRIVFAAP--RDPRHELEELGFKVLGRFTM 331 (347)
T ss_pred HHHHHHHHHHHHHHHhhcCcEEEEecC--CcchhhHhhcCceEEEEEEE
Confidence 46899999999999999888655 45567788999998765544
No 162
>PLN02476 O-methyltransferase
Probab=98.49 E-value=7.4e-07 Score=79.16 Aligned_cols=105 Identities=12% Similarity=0.075 Sum_probs=80.3
Q ss_pred CCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcC
Q psy1420 41 PTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEEL 120 (241)
Q Consensus 41 ~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~ 120 (241)
..+..+|||+|+++|..+ ..++..++ ....++++|.++...+.|+++++
T Consensus 116 ~~~ak~VLEIGT~tGySa-------------l~lA~al~----------------~~G~V~TiE~d~e~~~~Ar~n~~-- 164 (278)
T PLN02476 116 ILGAERCIEVGVYTGYSS-------------LAVALVLP----------------ESGCLVACERDSNSLEVAKRYYE-- 164 (278)
T ss_pred hcCCCeEEEecCCCCHHH-------------HHHHHhCC----------------CCCEEEEEECCHHHHHHHHHHHH--
Confidence 345679999999999988 43433111 24579999999999999999998
Q ss_pred CCccccccccceecceeeeeeccccCCCCCCeeEEecccCCC-C-C----CCCceeEEeeeehhhccccHHHHHHHHHHh
Q psy1420 121 PIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL-P-I----ESDSYSAYTIAFGIRNVTRIDKALSEAYRV 194 (241)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~-~----~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~ 194 (241)
+.++. ++++++.+|+.+. + . ..++||+|+.-.. -......++.+.++
T Consensus 165 -----------------------~aGl~-~~I~li~GdA~e~L~~l~~~~~~~~FD~VFIDa~---K~~Y~~y~e~~l~l 217 (278)
T PLN02476 165 -----------------------LAGVS-HKVNVKHGLAAESLKSMIQNGEGSSYDFAFVDAD---KRMYQDYFELLLQL 217 (278)
T ss_pred -----------------------HcCCC-CcEEEEEcCHHHHHHHHHhcccCCCCCEEEECCC---HHHHHHHHHHHHHh
Confidence 77877 6899999997653 2 1 1358999997432 23467888889999
Q ss_pred ccCCcEEEE
Q psy1420 195 LKPGGRFLC 203 (241)
Q Consensus 195 LkpgG~l~i 203 (241)
|+|||.+++
T Consensus 218 L~~GGvIV~ 226 (278)
T PLN02476 218 VRVGGVIVM 226 (278)
T ss_pred cCCCcEEEE
Confidence 999999887
No 163
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=98.49 E-value=2.4e-07 Score=78.94 Aligned_cols=105 Identities=19% Similarity=0.241 Sum_probs=79.1
Q ss_pred CCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCC
Q psy1420 43 HDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPI 122 (241)
Q Consensus 43 ~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~ 122 (241)
+..+|||+||++|+.+ ..++..++ ...+++.+|.++...+.|++.+.
T Consensus 45 ~~k~vLEIGt~~GySa-------------l~la~~l~----------------~~g~i~tiE~~~~~~~~A~~~~~---- 91 (205)
T PF01596_consen 45 RPKRVLEIGTFTGYSA-------------LWLAEALP----------------EDGKITTIEIDPERAEIARENFR---- 91 (205)
T ss_dssp T-SEEEEESTTTSHHH-------------HHHHHTST----------------TTSEEEEEESSHHHHHHHHHHHH----
T ss_pred CCceEEEeccccccHH-------------HHHHHhhc----------------ccceEEEecCcHHHHHHHHHHHH----
Confidence 4459999999999988 43433111 36789999999999999999988
Q ss_pred ccccccccceecceeeeeeccccCCCCCCeeEEecccCCC-C-----CCCCceeEEeeeehhhccccHHHHHHHHHHhcc
Q psy1420 123 ESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL-P-----IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLK 196 (241)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~-----~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~Lk 196 (241)
+.++. .+++++.+|+.+. + ...++||+|+.-.. -.+....++.+.++|+
T Consensus 92 ---------------------~ag~~-~~I~~~~gda~~~l~~l~~~~~~~~fD~VFiDa~---K~~y~~y~~~~~~ll~ 146 (205)
T PF01596_consen 92 ---------------------KAGLD-DRIEVIEGDALEVLPELANDGEEGQFDFVFIDAD---KRNYLEYFEKALPLLR 146 (205)
T ss_dssp ---------------------HTTGG-GGEEEEES-HHHHHHHHHHTTTTTSEEEEEEEST---GGGHHHHHHHHHHHEE
T ss_pred ---------------------hcCCC-CcEEEEEeccHhhHHHHHhccCCCceeEEEEccc---ccchhhHHHHHhhhcc
Confidence 77775 6899999997653 1 12358999997543 2456678888889999
Q ss_pred CCcEEEEEe
Q psy1420 197 PGGRFLCLE 205 (241)
Q Consensus 197 pgG~l~i~~ 205 (241)
|||.+++-.
T Consensus 147 ~ggvii~DN 155 (205)
T PF01596_consen 147 PGGVIIADN 155 (205)
T ss_dssp EEEEEEEET
T ss_pred CCeEEEEcc
Confidence 999998743
No 164
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=98.48 E-value=5.4e-07 Score=77.32 Aligned_cols=107 Identities=15% Similarity=0.205 Sum_probs=80.8
Q ss_pred cCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHh
Q psy1420 39 LGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAE 118 (241)
Q Consensus 39 l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~ 118 (241)
+...+..+|||+|++.|+.+ ..++..+. ...+++.+|.++.+.+.|+++..
T Consensus 55 ~~~~~~k~iLEiGT~~GySa-------------l~mA~~l~----------------~~g~l~tiE~~~e~~~~A~~n~~ 105 (219)
T COG4122 55 ARLSGPKRILEIGTAIGYSA-------------LWMALALP----------------DDGRLTTIERDEERAEIARENLA 105 (219)
T ss_pred HHhcCCceEEEeecccCHHH-------------HHHHhhCC----------------CCCeEEEEeCCHHHHHHHHHHHH
Confidence 33456779999999999988 33333111 25689999999999999999999
Q ss_pred cCCCccccccccceecceeeeeeccccCCCCCCeeEEe-cccCCC-C-CCCCceeEEeeeehhhccccHHHHHHHHHHhc
Q psy1420 119 ELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLE-ANAEEL-P-IESDSYSAYTIAFGIRNVTRIDKALSEAYRVL 195 (241)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~~~-~-~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~L 195 (241)
+.++. +++..+. +|..+. . ...++||+|+.-.. -.+...+++.+.++|
T Consensus 106 -------------------------~ag~~-~~i~~~~~gdal~~l~~~~~~~fDliFIDad---K~~yp~~le~~~~lL 156 (219)
T COG4122 106 -------------------------EAGVD-DRIELLLGGDALDVLSRLLDGSFDLVFIDAD---KADYPEYLERALPLL 156 (219)
T ss_pred -------------------------HcCCc-ceEEEEecCcHHHHHHhccCCCccEEEEeCC---hhhCHHHHHHHHHHh
Confidence 88887 5677877 464443 2 34689999996322 235678999999999
Q ss_pred cCCcEEEE
Q psy1420 196 KPGGRFLC 203 (241)
Q Consensus 196 kpgG~l~i 203 (241)
+|||.+++
T Consensus 157 r~GGliv~ 164 (219)
T COG4122 157 RPGGLIVA 164 (219)
T ss_pred CCCcEEEE
Confidence 99999987
No 165
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.47 E-value=6e-07 Score=74.30 Aligned_cols=109 Identities=17% Similarity=0.151 Sum_probs=68.3
Q ss_pred CCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcC
Q psy1420 41 PTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEEL 120 (241)
Q Consensus 41 ~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~ 120 (241)
..++.+|||+|||+|..+ ..++. + .....++.+|.++ .++.++.++.
T Consensus 43 ~~~~~~VLELGaG~Gl~g-------------i~~a~----~-------------~~~~~Vv~TD~~~-~l~~l~~Ni~-- 89 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPG-------------IAAAK----L-------------FGAARVVLTDYNE-VLELLRRNIE-- 89 (173)
T ss_dssp GTTTSEEEETT-TTSHHH-------------HHHHH----T--------------T-SEEEEEE-S--HHHHHHHHHH--
T ss_pred hcCCceEEEECCccchhH-------------HHHHh----c-------------cCCceEEEeccch-hhHHHHHHHH--
Confidence 356779999999999877 32222 1 0256799999999 8888888887
Q ss_pred CCccccccccceecceeeeeeccccC-CCCCCeeEEecccCCCC----CCCCceeEEeeeehhhccccHHHHHHHHHHhc
Q psy1420 121 PIESDSYSAYTIAFGIRNVTRIDKID-IPNPRLRFLEANAEELP----IESDSYSAYTIAFGIRNVTRIDKALSEAYRVL 195 (241)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~~~~~----~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~L 195 (241)
..+ ....++.+...+..+.. ....+||+|+.+-++++-.....+++.+.++|
T Consensus 90 -----------------------~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~IlasDv~Y~~~~~~~L~~tl~~ll 146 (173)
T PF10294_consen 90 -----------------------LNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDVILASDVLYDEELFEPLVRTLKRLL 146 (173)
T ss_dssp -----------------------TT--------EEEE--TTS-HHHHHHS-SSBSEEEEES--S-GGGHHHHHHHHHHHB
T ss_pred -----------------------hccccccccccCcEEEecCcccccccccccCCEEEEecccchHHHHHHHHHHHHHHh
Confidence 222 11135666666654421 23468999999999998888899999999999
Q ss_pred cCCcEEEEEe
Q psy1420 196 KPGGRFLCLE 205 (241)
Q Consensus 196 kpgG~l~i~~ 205 (241)
+|+|.+++..
T Consensus 147 ~~~~~vl~~~ 156 (173)
T PF10294_consen 147 KPNGKVLLAY 156 (173)
T ss_dssp TT-TTEEEEE
T ss_pred CCCCEEEEEe
Confidence 9999866654
No 166
>KOG3178|consensus
Probab=98.46 E-value=2.4e-06 Score=77.35 Aligned_cols=118 Identities=17% Similarity=0.238 Sum_probs=89.0
Q ss_pred CeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCCcc
Q psy1420 45 TKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIES 124 (241)
Q Consensus 45 ~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~ 124 (241)
...+|+|+|.|..+ ..++. ...++-+++.....+..+.....
T Consensus 179 ~~avDvGgGiG~v~-------------k~ll~-------------------~fp~ik~infdlp~v~~~a~~~~------ 220 (342)
T KOG3178|consen 179 NVAVDVGGGIGRVL-------------KNLLS-------------------KYPHIKGINFDLPFVLAAAPYLA------ 220 (342)
T ss_pred ceEEEcCCcHhHHH-------------HHHHH-------------------hCCCCceeecCHHHHHhhhhhhc------
Confidence 57899999999988 44433 24468888888777766554441
Q ss_pred ccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccH--HHHHHHHHHhccCCcEEE
Q psy1420 125 DSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRI--DKALSEAYRVLKPGGRFL 202 (241)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~ 202 (241)
+.++.+.+|.... .|. -|+|++.+++|+++|- .++|++++..|+|||.++
T Consensus 221 -------------------------~gV~~v~gdmfq~-~P~--~daI~mkWiLhdwtDedcvkiLknC~~sL~~~GkIi 272 (342)
T KOG3178|consen 221 -------------------------PGVEHVAGDMFQD-TPK--GDAIWMKWILHDWTDEDCVKILKNCKKSLPPGGKII 272 (342)
T ss_pred -------------------------CCcceeccccccc-CCC--cCeEEEEeecccCChHHHHHHHHHHHHhCCCCCEEE
Confidence 1356667775554 333 3699999999999875 599999999999999999
Q ss_pred EEecCH---------------------------------HHHHHHHHHCCCceEEEEEe
Q psy1420 203 CLEFSH---------------------------------EEFKSMIESAGFQYVTYENL 228 (241)
Q Consensus 203 i~~~~~---------------------------------~~~~~~l~~~Gf~~~~~~~~ 228 (241)
+.+.-. ++++..+.++||....+...
T Consensus 273 v~E~V~p~e~~~dd~~s~v~~~~d~lm~~~~~~Gkert~~e~q~l~~~~gF~~~~~~~~ 331 (342)
T KOG3178|consen 273 VVENVTPEEDKFDDIDSSVTRDMDLLMLTQTSGGKERTLKEFQALLPEEGFPVCMVALT 331 (342)
T ss_pred EEeccCCCCCCccccccceeehhHHHHHHHhccceeccHHHHHhcchhhcCceeEEEec
Confidence 987411 88899999999988776654
No 167
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=98.45 E-value=2.5e-06 Score=78.87 Aligned_cols=131 Identities=9% Similarity=0.076 Sum_probs=88.1
Q ss_pred HhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHH
Q psy1420 36 IDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEA 115 (241)
Q Consensus 36 ~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~ 115 (241)
.+.+...++.+|||++||+|..+ ..++. ....++++|+++.+++.+++
T Consensus 226 ~~~l~~~~~~~vLDL~cG~G~~~-------------l~la~-------------------~~~~v~~vE~~~~av~~a~~ 273 (374)
T TIGR02085 226 RQWVREIPVTQMWDLFCGVGGFG-------------LHCAG-------------------PDTQLTGIEIESEAIACAQQ 273 (374)
T ss_pred HHHHHhcCCCEEEEccCCccHHH-------------HHHhh-------------------cCCeEEEEECCHHHHHHHHH
Confidence 33333345678999999999988 33332 34679999999999999999
Q ss_pred HHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCC-CCCCceeEEeeeehhhccccHHHHHHHHHHh
Q psy1420 116 NAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELP-IESDSYSAYTIAFGIRNVTRIDKALSEAYRV 194 (241)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~ 194 (241)
++. ..++. ++++..+|+.... ....+||+|++.---. .-..++++.+. .
T Consensus 274 N~~-------------------------~~~~~--~~~~~~~d~~~~~~~~~~~~D~vi~DPPr~--G~~~~~l~~l~-~ 323 (374)
T TIGR02085 274 SAQ-------------------------MLGLD--NLSFAALDSAKFATAQMSAPELVLVNPPRR--GIGKELCDYLS-Q 323 (374)
T ss_pred HHH-------------------------HcCCC--cEEEEECCHHHHHHhcCCCCCEEEECCCCC--CCcHHHHHHHH-h
Confidence 987 55553 6889999986532 1124599988642211 11134445554 3
Q ss_pred ccCCcEEEEEecCH---HHHHHHHHHCCCceEEEEEecCc
Q psy1420 195 LKPGGRFLCLEFSH---EEFKSMIESAGFQYVTYENLTFG 231 (241)
Q Consensus 195 LkpgG~l~i~~~~~---~~~~~~l~~~Gf~~~~~~~~~~~ 231 (241)
++|++.++++--.. +++..+ .||++.++..+.+-
T Consensus 324 ~~p~~ivyvsc~p~TlaRDl~~L---~gy~l~~~~~~DmF 360 (374)
T TIGR02085 324 MAPKFILYSSCNAQTMAKDIAEL---SGYQIERVQLFDMF 360 (374)
T ss_pred cCCCeEEEEEeCHHHHHHHHHHh---cCceEEEEEEeccC
Confidence 78988888754333 555555 79999988877543
No 168
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=98.44 E-value=2.1e-06 Score=72.84 Aligned_cols=136 Identities=12% Similarity=0.149 Sum_probs=85.5
Q ss_pred HHHHHHhhcCC-CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHh
Q psy1420 31 WKDIFIDRLGP-THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPR 109 (241)
Q Consensus 31 ~~~~~~~~l~~-~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~ 109 (241)
.++.++..+.. .++.+|||+|||+|..+ ..++. . ...+++++|.++.+
T Consensus 40 v~e~l~~~l~~~~~~~~vLDl~~GsG~l~-------------l~~ls-------r-----------~a~~V~~vE~~~~a 88 (199)
T PRK10909 40 VRETLFNWLAPVIVDARCLDCFAGSGALG-------------LEALS-------R-----------YAAGATLLEMDRAV 88 (199)
T ss_pred HHHHHHHHHhhhcCCCEEEEcCCCccHHH-------------HHHHH-------c-----------CCCEEEEEECCHHH
Confidence 34445555432 45679999999999988 32211 1 23579999999999
Q ss_pred HHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCC-CCCCCceeEEeeeehhhccccHHHHH
Q psy1420 110 LRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL-PIESDSYSAYTIAFGIRNVTRIDKAL 188 (241)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~D~V~~~~~l~~~~~~~~~l 188 (241)
++.+++++. ..++. ++++++.|+... +....+||+|++.--.+. .-...++
T Consensus 89 ~~~a~~Nl~-------------------------~~~~~--~v~~~~~D~~~~l~~~~~~fDlV~~DPPy~~-g~~~~~l 140 (199)
T PRK10909 89 AQQLIKNLA-------------------------TLKAG--NARVVNTNALSFLAQPGTPHNVVFVDPPFRK-GLLEETI 140 (199)
T ss_pred HHHHHHHHH-------------------------HhCCC--cEEEEEchHHHHHhhcCCCceEEEECCCCCC-ChHHHHH
Confidence 999999987 44443 578888887652 222346999998654321 2234555
Q ss_pred HHHHH--hccCCcEEEEEecCHHHHHHHHHHCCCceEEEEE
Q psy1420 189 SEAYR--VLKPGGRFLCLEFSHEEFKSMIESAGFQYVTYEN 227 (241)
Q Consensus 189 ~~~~~--~LkpgG~l~i~~~~~~~~~~~l~~~Gf~~~~~~~ 227 (241)
+.+.. .++|+|.+++.......+.+. ..+|...+..+
T Consensus 141 ~~l~~~~~l~~~~iv~ve~~~~~~~~~~--~~~~~~~~~k~ 179 (199)
T PRK10909 141 NLLEDNGWLADEALIYVESEVENGLPTV--PANWQLHREKV 179 (199)
T ss_pred HHHHHCCCcCCCcEEEEEecCCCCcccC--CCccEEEEEec
Confidence 55554 478999888764433333221 23566554443
No 169
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.41 E-value=5e-06 Score=69.70 Aligned_cols=121 Identities=24% Similarity=0.386 Sum_probs=89.6
Q ss_pred eEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCCccc
Q psy1420 46 KLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIESD 125 (241)
Q Consensus 46 ~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~ 125 (241)
+++|+|+|.|--. ..+ +.. . +..+++.+|....-..+.+....
T Consensus 51 ~~lDiGSGaGfPG-------------ipL----aI~---~----------p~~~~~LvEs~~KK~~FL~~~~~------- 93 (184)
T PF02527_consen 51 KVLDIGSGAGFPG-------------IPL----AIA---R----------PDLQVTLVESVGKKVAFLKEVVR------- 93 (184)
T ss_dssp EEEEETSTTTTTH-------------HHH----HHH--------------TTSEEEEEESSHHHHHHHHHHHH-------
T ss_pred eEEecCCCCCChh-------------HHH----HHh---C----------CCCcEEEEeCCchHHHHHHHHHH-------
Confidence 8999999999887 222 111 1 45679999999999999888877
Q ss_pred cccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHHHHHHhccCCcEEEEEe
Q psy1420 126 SYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 205 (241)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 205 (241)
..+++ ++++++..+++ +....+||+|++ +.+.+....++.+...+++||.+++.-
T Consensus 94 ------------------~L~L~--nv~v~~~R~E~-~~~~~~fd~v~a----RAv~~l~~l~~~~~~~l~~~G~~l~~K 148 (184)
T PF02527_consen 94 ------------------ELGLS--NVEVINGRAEE-PEYRESFDVVTA----RAVAPLDKLLELARPLLKPGGRLLAYK 148 (184)
T ss_dssp ------------------HHT-S--SEEEEES-HHH-TTTTT-EEEEEE----ESSSSHHHHHHHHGGGEEEEEEEEEEE
T ss_pred ------------------HhCCC--CEEEEEeeecc-cccCCCccEEEe----ehhcCHHHHHHHHHHhcCCCCEEEEEc
Confidence 56666 79999999998 444678999998 777888999999999999999998875
Q ss_pred cCH-----HHHHHHHHHCCCceEEEEEe
Q psy1420 206 FSH-----EEFKSMIESAGFQYVTYENL 228 (241)
Q Consensus 206 ~~~-----~~~~~~l~~~Gf~~~~~~~~ 228 (241)
=.. ++.+..++..|.+...+...
T Consensus 149 G~~~~~El~~~~~~~~~~~~~~~~v~~~ 176 (184)
T PF02527_consen 149 GPDAEEELEEAKKAWKKLGLKVLSVPEF 176 (184)
T ss_dssp SS--HHHHHTHHHHHHCCCEEEEEEEEE
T ss_pred CCChHHHHHHHHhHHHHhCCEEeeeccc
Confidence 332 44555666666666666554
No 170
>KOG3191|consensus
Probab=98.40 E-value=8e-06 Score=67.92 Aligned_cols=127 Identities=14% Similarity=0.183 Sum_probs=84.4
Q ss_pred CCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCCc
Q psy1420 44 DTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIE 123 (241)
Q Consensus 44 ~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~ 123 (241)
..-++|+|||+|..+ ..+...++ +...+.++|++|.+.+.....+.
T Consensus 44 ~~i~lEIG~GSGvvs-------------tfL~~~i~----------------~~~~~latDiNp~A~~~Tl~TA~----- 89 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVS-------------TFLASVIG----------------PQALYLATDINPEALEATLETAR----- 89 (209)
T ss_pred ceeEEEecCCcchHH-------------HHHHHhcC----------------CCceEEEecCCHHHHHHHHHHHH-----
Confidence 557999999999988 33333111 45679999999999999887776
Q ss_pred cccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehh----------hc-----------cc
Q psy1420 124 SDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGI----------RN-----------VT 182 (241)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l----------~~-----------~~ 182 (241)
..+. ++..++.|+... +..+++|+++.+-.. ++ ..
T Consensus 90 --------------------~n~~---~~~~V~tdl~~~-l~~~~VDvLvfNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~ 145 (209)
T KOG3191|consen 90 --------------------CNRV---HIDVVRTDLLSG-LRNESVDVLVFNPPYVPTSDEEIGDEGIASAWAGGKDGRE 145 (209)
T ss_pred --------------------hcCC---ccceeehhHHhh-hccCCccEEEECCCcCcCCcccchhHHHHHHHhcCcchHH
Confidence 2221 255566665442 223566666643110 00 11
Q ss_pred cHHHHHHHHHHhccCCcEEEEEecCH---HHHHHHHHHCCCceEEEEEe
Q psy1420 183 RIDKALSEAYRVLKPGGRFLCLEFSH---EEFKSMIESAGFQYVTYENL 228 (241)
Q Consensus 183 ~~~~~l~~~~~~LkpgG~l~i~~~~~---~~~~~~l~~~Gf~~~~~~~~ 228 (241)
-.++++..+-.+|.|.|.+++..... +++-.++++.||........
T Consensus 146 v~d~ll~~v~~iLSp~Gv~Ylv~~~~N~p~ei~k~l~~~g~~~~~~~~R 194 (209)
T KOG3191|consen 146 VTDRLLPQVPDILSPRGVFYLVALRANKPKEILKILEKKGYGVRIAMQR 194 (209)
T ss_pred HHHHHHhhhhhhcCcCceEEeeehhhcCHHHHHHHHhhcccceeEEEEE
Confidence 24677778888999999999875444 88888999999986554433
No 171
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.40 E-value=6e-06 Score=69.07 Aligned_cols=133 Identities=18% Similarity=0.203 Sum_probs=87.4
Q ss_pred CCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhc
Q psy1420 40 GPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEE 119 (241)
Q Consensus 40 ~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~ 119 (241)
+.-.+.+|+|+|||||.++ ....- . ....++++|+++.+++.+++++.
T Consensus 42 g~l~g~~V~DlG~GTG~La-------------~ga~~------l------------Ga~~V~~vdiD~~a~ei~r~N~~- 89 (198)
T COG2263 42 GDLEGKTVLDLGAGTGILA-------------IGAAL------L------------GASRVLAVDIDPEALEIARANAE- 89 (198)
T ss_pred CCcCCCEEEEcCCCcCHHH-------------HHHHh------c------------CCcEEEEEecCHHHHHHHHHHHH-
Confidence 4456778999999999988 32221 1 24689999999999999999998
Q ss_pred CCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeee--ehhhccccHHHHHHHHHHhccC
Q psy1420 120 LPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIA--FGIRNVTRIDKALSEAYRVLKP 197 (241)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~--~~l~~~~~~~~~l~~~~~~Lkp 197 (241)
+ +. +++.+.++|+.... .++|.++.+ |+...-..-..++..+.+..+
T Consensus 90 ------------------------~--l~-g~v~f~~~dv~~~~---~~~dtvimNPPFG~~~rhaDr~Fl~~Ale~s~- 138 (198)
T COG2263 90 ------------------------E--LL-GDVEFVVADVSDFR---GKFDTVIMNPPFGSQRRHADRPFLLKALEISD- 138 (198)
T ss_pred ------------------------h--hC-CceEEEEcchhhcC---CccceEEECCCCccccccCCHHHHHHHHHhhh-
Confidence 4 22 57999999999874 568888876 343311111234444433321
Q ss_pred CcEEEEE--ecCHHHHHHHHHHCCCceEEEEEecCceeEEEe
Q psy1420 198 GGRFLCL--EFSHEEFKSMIESAGFQYVTYENLTFGVVAIHS 237 (241)
Q Consensus 198 gG~l~i~--~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~ 237 (241)
.++-. .-+.+-++...+.+|+++.-..+..+.+-.++.
T Consensus 139 --vVYsiH~a~~~~f~~~~~~~~G~~v~~~~~~~~~iP~~y~ 178 (198)
T COG2263 139 --VVYSIHKAGSRDFVEKFAADLGGTVTHIERARFPIPRTYP 178 (198)
T ss_pred --eEEEeeccccHHHHHHHHHhcCCeEEEEEEEEEecCccCc
Confidence 11110 112277889999999998877776665555443
No 172
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.40 E-value=3.1e-06 Score=73.13 Aligned_cols=107 Identities=21% Similarity=0.187 Sum_probs=81.2
Q ss_pred CeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCCcc
Q psy1420 45 TKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIES 124 (241)
Q Consensus 45 ~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~ 124 (241)
..+||||||.|... ..++. .+ +...++|+|+....+..+.+.+.
T Consensus 50 pi~lEIGfG~G~~l-------------~~~A~-------~n----------P~~nfiGiEi~~~~v~~~l~k~~------ 93 (227)
T COG0220 50 PIVLEIGFGMGEFL-------------VEMAK-------KN----------PEKNFLGIEIRVPGVAKALKKIK------ 93 (227)
T ss_pred cEEEEECCCCCHHH-------------HHHHH-------HC----------CCCCEEEEEEehHHHHHHHHHHH------
Confidence 47999999999987 44443 22 56789999999999999999888
Q ss_pred ccccccceecceeeeeeccccCCCCCCeeEEecccCCCC---CCCCceeEEeeeehhhccc-----c---HHHHHHHHHH
Q psy1420 125 DSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELP---IESDSYSAYTIAFGIRNVT-----R---IDKALSEAYR 193 (241)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~~D~V~~~~~l~~~~-----~---~~~~l~~~~~ 193 (241)
+.++. ++.+++.|+..+- .++++.|-|..++.=-|.. + ...+++.+.+
T Consensus 94 -------------------~~~l~--Nlri~~~DA~~~l~~~~~~~sl~~I~i~FPDPWpKkRH~KRRl~~~~fl~~~a~ 152 (227)
T COG0220 94 -------------------ELGLK--NLRLLCGDAVEVLDYLIPDGSLDKIYINFPDPWPKKRHHKRRLTQPEFLKLYAR 152 (227)
T ss_pred -------------------HcCCC--cEEEEcCCHHHHHHhcCCCCCeeEEEEECCCCCCCccccccccCCHHHHHHHHH
Confidence 66764 6999999987651 3344899998765432211 1 2689999999
Q ss_pred hccCCcEEEEEecCH
Q psy1420 194 VLKPGGRFLCLEFSH 208 (241)
Q Consensus 194 ~LkpgG~l~i~~~~~ 208 (241)
.|+|||.|.+.+=..
T Consensus 153 ~Lk~gG~l~~aTD~~ 167 (227)
T COG0220 153 KLKPGGVLHFATDNE 167 (227)
T ss_pred HccCCCEEEEEecCH
Confidence 999999999876444
No 173
>KOG1661|consensus
Probab=98.36 E-value=1.8e-06 Score=73.27 Aligned_cols=113 Identities=19% Similarity=0.251 Sum_probs=79.4
Q ss_pred CCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcC
Q psy1420 41 PTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEEL 120 (241)
Q Consensus 41 ~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~ 120 (241)
..||.++||+|+|+|+++ . -+|.++... .....|+|.-+..++.+++++...
T Consensus 80 L~pG~s~LdvGsGSGYLt-------------~----~~~~mvg~~-----------g~~~~GIEh~~eLVe~Sk~nl~k~ 131 (237)
T KOG1661|consen 80 LQPGASFLDVGSGSGYLT-------------A----CFARMVGAT-----------GGNVHGIEHIPELVEYSKKNLDKD 131 (237)
T ss_pred hccCcceeecCCCccHHH-------------H----HHHHHhcCC-----------CccccchhhhHHHHHHHHHHHHhh
Confidence 468999999999999988 2 233344332 334489999999999999988732
Q ss_pred CCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHHHHHHhccCCcE
Q psy1420 121 PIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGR 200 (241)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~ 200 (241)
.-.+++ ...+..+++.++.+|-...-.+..+||+|.+.... .+..+++...|+|||+
T Consensus 132 i~~~e~-----------------~~~~~~~~l~ivvGDgr~g~~e~a~YDaIhvGAaa------~~~pq~l~dqL~~gGr 188 (237)
T KOG1661|consen 132 ITTSES-----------------SSKLKRGELSIVVGDGRKGYAEQAPYDAIHVGAAA------SELPQELLDQLKPGGR 188 (237)
T ss_pred ccCchh-----------------hhhhccCceEEEeCCccccCCccCCcceEEEccCc------cccHHHHHHhhccCCe
Confidence 211111 11223357888899988776667899999987433 3445667788999999
Q ss_pred EEEE
Q psy1420 201 FLCL 204 (241)
Q Consensus 201 l~i~ 204 (241)
+++.
T Consensus 189 llip 192 (237)
T KOG1661|consen 189 LLIP 192 (237)
T ss_pred EEEe
Confidence 9884
No 174
>PHA03412 putative methyltransferase; Provisional
Probab=98.32 E-value=1.8e-06 Score=74.92 Aligned_cols=118 Identities=9% Similarity=0.178 Sum_probs=78.5
Q ss_pred CCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCC
Q psy1420 43 HDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPI 122 (241)
Q Consensus 43 ~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~ 122 (241)
.+.+|||+|||+|.++ ..++. .+... ....++++|+++.+++.++++..
T Consensus 49 ~~grVLDlG~GSG~La-------------lala~----~~~~~----------~~~~V~aVEID~~Al~~Ar~n~~---- 97 (241)
T PHA03412 49 TSGSVVDLCAGIGGLS-------------FAMVH----MMMYA----------KPREIVCVELNHTYYKLGKRIVP---- 97 (241)
T ss_pred CCCEEEEccChHHHHH-------------HHHHH----hcccC----------CCcEEEEEECCHHHHHHHHhhcc----
Confidence 3679999999999988 33322 11111 23579999999999999997754
Q ss_pred ccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhcc------------ccHHHHHHH
Q psy1420 123 ESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNV------------TRIDKALSE 190 (241)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~------------~~~~~~l~~ 190 (241)
++.+...|+...+. ..+||+|+++--.... .-...++..
T Consensus 98 ----------------------------~~~~~~~D~~~~~~-~~~FDlIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~ 148 (241)
T PHA03412 98 ----------------------------EATWINADALTTEF-DTLFDMAISNPPFGKIKTSDFKGKYTGAEFEYKVIER 148 (241)
T ss_pred ----------------------------CCEEEEcchhcccc-cCCccEEEECCCCCCccccccCCcccccHHHHHHHHH
Confidence 36678888876554 4589999987332211 113568888
Q ss_pred HHHhccCCcEEEEEec------------------CHHHHHHHHHHCCCc
Q psy1420 191 AYRVLKPGGRFLCLEF------------------SHEEFKSMIESAGFQ 221 (241)
Q Consensus 191 ~~~~LkpgG~l~i~~~------------------~~~~~~~~l~~~Gf~ 221 (241)
+.++++||+. ++-.. +..+..++.++.|+.
T Consensus 149 A~~Ll~~G~~-ILP~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (241)
T PHA03412 149 ASQIARQGTF-IIPQMSANFRYSGTHYFRQDESTTSSKCKKFLDETGLE 196 (241)
T ss_pred HHHHcCCCEE-EeCcccccCcccCccceeeccCcccHHHHHHHHhcCee
Confidence 8886666664 33110 007777888888864
No 175
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=98.32 E-value=6.8e-06 Score=76.31 Aligned_cols=127 Identities=17% Similarity=0.203 Sum_probs=93.8
Q ss_pred CCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCCc
Q psy1420 44 DTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIE 123 (241)
Q Consensus 44 ~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~ 123 (241)
|.+||++=|-||.++ ...+. ....+++.+|.|...++.+++++.
T Consensus 218 GkrvLNlFsYTGgfS-------------v~Aa~------------------gGA~~vt~VD~S~~al~~a~~N~~----- 261 (393)
T COG1092 218 GKRVLNLFSYTGGFS-------------VHAAL------------------GGASEVTSVDLSKRALEWARENAE----- 261 (393)
T ss_pred CCeEEEecccCcHHH-------------HHHHh------------------cCCCceEEEeccHHHHHHHHHHHH-----
Confidence 889999999999998 43333 023489999999999999999998
Q ss_pred cccccccceecceeeeeeccccCCCCCCeeEEecccCCC----CCCCCceeEEeeee---------hhhccccHHHHHHH
Q psy1420 124 SDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL----PIESDSYSAYTIAF---------GIRNVTRIDKALSE 190 (241)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~----~~~~~~~D~V~~~~---------~l~~~~~~~~~l~~ 190 (241)
-+++...+.+++++|+.+. .-...+||+|+.-- ......+..+.+..
T Consensus 262 --------------------LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~ 321 (393)
T COG1092 262 --------------------LNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLIILDPPSFARSKKQEFSAQRDYKDLNDL 321 (393)
T ss_pred --------------------hcCCCccceeeehhhHHHHHHHHHhcCCcccEEEECCcccccCcccchhHHHHHHHHHHH
Confidence 7777666789999997764 12245899999631 11223466788999
Q ss_pred HHHhccCCcEEEEEecCH--------HHHHHHHHHCCCceEEEE
Q psy1420 191 AYRVLKPGGRFLCLEFSH--------EEFKSMIESAGFQYVTYE 226 (241)
Q Consensus 191 ~~~~LkpgG~l~i~~~~~--------~~~~~~l~~~Gf~~~~~~ 226 (241)
+.++|+|||.+++++-+. +.+...+...|.....+.
T Consensus 322 ~~~iL~pgG~l~~~s~~~~~~~~~f~~~i~~a~~~~~~~~~~~~ 365 (393)
T COG1092 322 ALRLLAPGGTLVTSSCSRHFSSDLFLEIIARAAAAAGRRAQEIE 365 (393)
T ss_pred HHHHcCCCCEEEEEecCCccCHHHHHHHHHHHHHhcCCcEEEee
Confidence 999999999999877555 444555566666655443
No 176
>KOG1499|consensus
Probab=98.32 E-value=2e-06 Score=77.91 Aligned_cols=112 Identities=14% Similarity=0.183 Sum_probs=78.8
Q ss_pred HHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHH
Q psy1420 33 DIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRF 112 (241)
Q Consensus 33 ~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~ 112 (241)
..+...-..-++..|||+|||||-++ . .+.+ .....++++|.|..+ +.
T Consensus 50 ~~i~~n~~lf~dK~VlDVGcGtGILS-------------~---------F~ak---------AGA~~V~aVe~S~ia-~~ 97 (346)
T KOG1499|consen 50 NAILQNKHLFKDKTVLDVGCGTGILS-------------M---------FAAK---------AGARKVYAVEASSIA-DF 97 (346)
T ss_pred HHHhcchhhcCCCEEEEcCCCccHHH-------------H---------HHHH---------hCcceEEEEechHHH-HH
Confidence 33444434457789999999999988 2 2211 245689999987766 77
Q ss_pred HHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhc---cccHHHHHH
Q psy1420 113 LEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRN---VTRIDKALS 189 (241)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~---~~~~~~~l~ 189 (241)
+.+.+. ..++. +.++++.+.++++.+|..++|+|++-+.=+. -.-.+..|-
T Consensus 98 a~~iv~-------------------------~N~~~-~ii~vi~gkvEdi~LP~eKVDiIvSEWMGy~Ll~EsMldsVl~ 151 (346)
T KOG1499|consen 98 ARKIVK-------------------------DNGLE-DVITVIKGKVEDIELPVEKVDIIVSEWMGYFLLYESMLDSVLY 151 (346)
T ss_pred HHHHHH-------------------------hcCcc-ceEEEeecceEEEecCccceeEEeehhhhHHHHHhhhhhhhhh
Confidence 887777 55665 5689999999988776789999997543222 123345555
Q ss_pred HHHHhccCCcEEE
Q psy1420 190 EAYRVLKPGGRFL 202 (241)
Q Consensus 190 ~~~~~LkpgG~l~ 202 (241)
.=-+.|+|||.++
T Consensus 152 ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 152 ARDKWLKEGGLIY 164 (346)
T ss_pred hhhhccCCCceEc
Confidence 5567999999986
No 177
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=98.27 E-value=2e-06 Score=75.32 Aligned_cols=104 Identities=10% Similarity=0.038 Sum_probs=78.4
Q ss_pred CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCC
Q psy1420 42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP 121 (241)
Q Consensus 42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~ 121 (241)
.+..+|||+|+++|+.+ ..++..++ ...+++.+|.++...+.|++.+.
T Consensus 78 ~~ak~iLEiGT~~GySa-------------l~la~al~----------------~~g~v~tiE~~~~~~~~Ar~~~~--- 125 (247)
T PLN02589 78 INAKNTMEIGVYTGYSL-------------LATALALP----------------EDGKILAMDINRENYELGLPVIQ--- 125 (247)
T ss_pred hCCCEEEEEeChhhHHH-------------HHHHhhCC----------------CCCEEEEEeCCHHHHHHHHHHHH---
Confidence 34558999999999988 33333111 35689999999999999999998
Q ss_pred CccccccccceecceeeeeeccccCCCCCCeeEEecccCCC-C-C-----CCCceeEEeeeehhhccccHHHHHHHHHHh
Q psy1420 122 IESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL-P-I-----ESDSYSAYTIAFGIRNVTRIDKALSEAYRV 194 (241)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~-~-----~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~ 194 (241)
+.++. ++++++.+++.+. + . ..++||+|+.-.. -......++.+.++
T Consensus 126 ----------------------~ag~~-~~I~~~~G~a~e~L~~l~~~~~~~~~fD~iFiDad---K~~Y~~y~~~~l~l 179 (247)
T PLN02589 126 ----------------------KAGVA-HKIDFREGPALPVLDQMIEDGKYHGTFDFIFVDAD---KDNYINYHKRLIDL 179 (247)
T ss_pred ----------------------HCCCC-CceEEEeccHHHHHHHHHhccccCCcccEEEecCC---HHHhHHHHHHHHHh
Confidence 77876 7899999987653 2 1 1368999997433 23455777888899
Q ss_pred ccCCcEEEE
Q psy1420 195 LKPGGRFLC 203 (241)
Q Consensus 195 LkpgG~l~i 203 (241)
|+|||.+++
T Consensus 180 l~~GGviv~ 188 (247)
T PLN02589 180 VKVGGVIGY 188 (247)
T ss_pred cCCCeEEEE
Confidence 999999886
No 178
>PRK00536 speE spermidine synthase; Provisional
Probab=98.25 E-value=8.7e-06 Score=71.81 Aligned_cols=123 Identities=12% Similarity=0.031 Sum_probs=85.0
Q ss_pred CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCC
Q psy1420 42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP 121 (241)
Q Consensus 42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~ 121 (241)
....+||-+|+|.|..+ +.++. ...+++.+|+++..++.+++-...+
T Consensus 71 ~~pk~VLIiGGGDGg~~-------------REvLk-------------------h~~~v~mVeID~~Vv~~~k~~lP~~- 117 (262)
T PRK00536 71 KELKEVLIVDGFDLELA-------------HQLFK-------------------YDTHVDFVQADEKILDSFISFFPHF- 117 (262)
T ss_pred CCCCeEEEEcCCchHHH-------------HHHHC-------------------cCCeeEEEECCHHHHHHHHHHCHHH-
Confidence 34469999999999998 77776 2348999999999999999865521
Q ss_pred CccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHHHHHHhccCCcEE
Q psy1420 122 IESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRF 201 (241)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l 201 (241)
...+.+++++++.. +.+ ...++||+|++-.. ....+.+.+++.|+|||.+
T Consensus 118 ----------------------~~~~~DpRv~l~~~-~~~--~~~~~fDVIIvDs~-----~~~~fy~~~~~~L~~~Gi~ 167 (262)
T PRK00536 118 ----------------------HEVKNNKNFTHAKQ-LLD--LDIKKYDLIICLQE-----PDIHKIDGLKRMLKEDGVF 167 (262)
T ss_pred ----------------------HHhhcCCCEEEeeh-hhh--ccCCcCCEEEEcCC-----CChHHHHHHHHhcCCCcEE
Confidence 11344467877752 221 12368999997532 3467789999999999999
Q ss_pred EEEecCH-------HHHHHHHHHCCCceEEEEEe
Q psy1420 202 LCLEFSH-------EEFKSMIESAGFQYVTYENL 228 (241)
Q Consensus 202 ~i~~~~~-------~~~~~~l~~~Gf~~~~~~~~ 228 (241)
+...-+. ..+.+.+++ .|..+.....
T Consensus 168 v~Qs~sp~~~~~~~~~i~~~l~~-~F~~v~~y~~ 200 (262)
T PRK00536 168 ISVAKHPLLEHVSMQNALKNMGD-FFSIAMPFVA 200 (262)
T ss_pred EECCCCcccCHHHHHHHHHHHHh-hCCceEEEEe
Confidence 8754333 344444555 5886655544
No 179
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=98.24 E-value=2.5e-05 Score=66.97 Aligned_cols=126 Identities=21% Similarity=0.254 Sum_probs=96.8
Q ss_pred CCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCCc
Q psy1420 44 DTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIE 123 (241)
Q Consensus 44 ~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~ 123 (241)
+.+++|+|+|.|--+ ..++ ... +...++.+|....-+.+.+....
T Consensus 68 ~~~~~DIGSGaGfPG-------------ipLA-------I~~----------p~~~vtLles~~Kk~~FL~~~~~----- 112 (215)
T COG0357 68 AKRVLDIGSGAGFPG-------------IPLA-------IAF----------PDLKVTLLESLGKKIAFLREVKK----- 112 (215)
T ss_pred CCEEEEeCCCCCCch-------------hhHH-------Hhc----------cCCcEEEEccCchHHHHHHHHHH-----
Confidence 579999999999887 2211 111 34569999999999999888777
Q ss_pred cccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCc-eeEEeeeehhhccccHHHHHHHHHHhccCCcEEE
Q psy1420 124 SDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDS-YSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFL 202 (241)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~-~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~ 202 (241)
..+++ +++++++.+++..-. .. ||+|++ +.+.+....++-+...+|+||.++
T Consensus 113 --------------------eL~L~--nv~i~~~RaE~~~~~-~~~~D~vts----RAva~L~~l~e~~~pllk~~g~~~ 165 (215)
T COG0357 113 --------------------ELGLE--NVEIVHGRAEEFGQE-KKQYDVVTS----RAVASLNVLLELCLPLLKVGGGFL 165 (215)
T ss_pred --------------------HhCCC--CeEEehhhHhhcccc-cccCcEEEe----ehccchHHHHHHHHHhcccCCcch
Confidence 45555 799999999987532 23 999998 667788889999999999999876
Q ss_pred EEecCH-----HHHHHHHHHCCCceEEEEEecCc
Q psy1420 203 CLEFSH-----EEFKSMIESAGFQYVTYENLTFG 231 (241)
Q Consensus 203 i~~~~~-----~~~~~~l~~~Gf~~~~~~~~~~~ 231 (241)
+.-+.. .+.+......|+.+.++......
T Consensus 166 ~~k~~~~~~e~~e~~~a~~~~~~~~~~~~~~~~p 199 (215)
T COG0357 166 AYKGLAGKDELPEAEKAILPLGGQVEKVFSLTVP 199 (215)
T ss_pred hhhHHhhhhhHHHHHHHHHhhcCcEEEEEEeecC
Confidence 544333 77788888999999888887643
No 180
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.24 E-value=1.2e-05 Score=69.51 Aligned_cols=130 Identities=15% Similarity=0.097 Sum_probs=75.1
Q ss_pred HHHHhhcCC-CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHH
Q psy1420 33 DIFIDRLGP-THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLR 111 (241)
Q Consensus 33 ~~~~~~l~~-~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~ 111 (241)
..+++.+.. .++.++||+|||||.++ ..++. .....++++|+++.++.
T Consensus 64 ~~~l~~~~~~~~~~~vlDiG~gtG~~t-------------~~l~~------------------~ga~~v~avD~~~~~l~ 112 (228)
T TIGR00478 64 KEALEEFNIDVKNKIVLDVGSSTGGFT-------------DCALQ------------------KGAKEVYGVDVGYNQLA 112 (228)
T ss_pred HHHHHhcCCCCCCCEEEEcccCCCHHH-------------HHHHH------------------cCCCEEEEEeCCHHHHH
Confidence 345555544 46778999999999998 43333 12457999999998886
Q ss_pred HHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHHHH
Q psy1420 112 FLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEA 191 (241)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~~ 191 (241)
...+.-. +...+ +. .+++ ..+.+..+..-..+|+++++..+ .+..+
T Consensus 113 ~~l~~~~-----------~v~~~-----------~~--~ni~--~~~~~~~~~d~~~~DvsfiS~~~--------~l~~i 158 (228)
T TIGR00478 113 EKLRQDE-----------RVKVL-----------ER--TNIR--YVTPADIFPDFATFDVSFISLIS--------ILPEL 158 (228)
T ss_pred HHHhcCC-----------CeeEe-----------ec--CCcc--cCCHhHcCCCceeeeEEEeehHh--------HHHHH
Confidence 6222111 00000 00 0111 12222222122367888776544 36678
Q ss_pred HHhccCCcEEEEEe---cCH---------------------HHHHHHHHHCCCceEEEEEe
Q psy1420 192 YRVLKPGGRFLCLE---FSH---------------------EEFKSMIESAGFQYVTYENL 228 (241)
Q Consensus 192 ~~~LkpgG~l~i~~---~~~---------------------~~~~~~l~~~Gf~~~~~~~~ 228 (241)
.+.|+| |.+++.- |.. +.+...+.+.||.+......
T Consensus 159 ~~~l~~-~~~~~L~KPqFE~~~~~~~~~giv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 218 (228)
T TIGR00478 159 DLLLNP-NDLTLLFKPQFEAGREKKNKKGVVRDKEAIALALHKVIDKGESPDFQEKKIIFS 218 (228)
T ss_pred HHHhCc-CeEEEEcChHhhhcHhhcCcCCeecCHHHHHHHHHHHHHHHHcCCCeEeeEEEC
Confidence 888888 7665432 111 66777788889987766544
No 181
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=98.24 E-value=1.2e-05 Score=76.44 Aligned_cols=124 Identities=15% Similarity=0.214 Sum_probs=87.8
Q ss_pred CCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhc
Q psy1420 40 GPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEE 119 (241)
Q Consensus 40 ~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~ 119 (241)
++.++.+|||+++|+|.-+ .+++..|+ ....+++.|+++..++.+.++++
T Consensus 110 ~~~pg~~VLD~CAAPGgKT-------------t~la~~l~----------------~~g~lvA~D~~~~R~~~L~~nl~- 159 (470)
T PRK11933 110 DDNAPQRVLDMAAAPGSKT-------------TQIAALMN----------------NQGAIVANEYSASRVKVLHANIS- 159 (470)
T ss_pred CCCCCCEEEEeCCCccHHH-------------HHHHHHcC----------------CCCEEEEEeCCHHHHHHHHHHHH-
Confidence 6689999999999999988 55544222 24589999999999999999999
Q ss_pred CCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCC-CCCCceeEEe----eee--hhhcccc---------
Q psy1420 120 LPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELP-IESDSYSAYT----IAF--GIRNVTR--------- 183 (241)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~D~V~----~~~--~l~~~~~--------- 183 (241)
+.++. ++.+...|...++ .....||.|+ |+. .++.-++
T Consensus 160 ------------------------r~G~~--nv~v~~~D~~~~~~~~~~~fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~ 213 (470)
T PRK11933 160 ------------------------RCGVS--NVALTHFDGRVFGAALPETFDAILLDAPCSGEGTVRKDPDALKNWSPES 213 (470)
T ss_pred ------------------------HcCCC--eEEEEeCchhhhhhhchhhcCeEEEcCCCCCCcccccCHHHhhhCCHHH
Confidence 66765 5777778876553 2245799999 442 2221111
Q ss_pred -------HHHHHHHHHHhccCCcEEEEEecCH------HHHHHHHHHCC
Q psy1420 184 -------IDKALSEAYRVLKPGGRFLCLEFSH------EEFKSMIESAG 219 (241)
Q Consensus 184 -------~~~~l~~~~~~LkpgG~l~i~~~~~------~~~~~~l~~~G 219 (241)
-.++|..+.++|||||+|+-++.+- +.+..++++.+
T Consensus 214 v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~~eENE~vV~~~L~~~~ 262 (470)
T PRK11933 214 NLEIAATQRELIESAFHALKPGGTLVYSTCTLNREENQAVCLWLKETYP 262 (470)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCHHHHHHHHHHHHHHCC
Confidence 1578899999999999998766443 33445555553
No 182
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.22 E-value=3.8e-06 Score=74.36 Aligned_cols=86 Identities=14% Similarity=0.179 Sum_probs=64.4
Q ss_pred HHHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHh
Q psy1420 30 LWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPR 109 (241)
Q Consensus 30 ~~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~ 109 (241)
...+.+.+.+...++.+|||+|||+|..+ ..++. ...+++++|+++.+
T Consensus 29 ~i~~~i~~~l~~~~~~~VLEiG~G~G~lt-------------~~L~~-------------------~~~~v~avE~d~~~ 76 (272)
T PRK00274 29 NILDKIVDAAGPQPGDNVLEIGPGLGALT-------------EPLLE-------------------RAAKVTAVEIDRDL 76 (272)
T ss_pred HHHHHHHHhcCCCCcCeEEEeCCCccHHH-------------HHHHH-------------------hCCcEEEEECCHHH
Confidence 34566777777778889999999999998 44444 23479999999999
Q ss_pred HHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeeh
Q psy1420 110 LRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFG 177 (241)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~ 177 (241)
++.++++.. . ++++++++|+...+.++-..|.|+++.-
T Consensus 77 ~~~~~~~~~-------------------------~-----~~v~~i~~D~~~~~~~~~~~~~vv~NlP 114 (272)
T PRK00274 77 APILAETFA-------------------------E-----DNLTIIEGDALKVDLSELQPLKVVANLP 114 (272)
T ss_pred HHHHHHhhc-------------------------c-----CceEEEEChhhcCCHHHcCcceEEEeCC
Confidence 999987654 1 3688999999988654322477776543
No 183
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.22 E-value=9.8e-06 Score=66.58 Aligned_cols=147 Identities=10% Similarity=0.160 Sum_probs=104.7
Q ss_pred HHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhH
Q psy1420 31 WKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRL 110 (241)
Q Consensus 31 ~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~ 110 (241)
..+.|...+++..+.-|||+|.|||..+ +.++.- . .....++++|++++..
T Consensus 36 lA~~M~s~I~pesglpVlElGPGTGV~T-------------kaIL~~-------g---------v~~~~L~~iE~~~dF~ 86 (194)
T COG3963 36 LARKMASVIDPESGLPVLELGPGTGVIT-------------KAILSR-------G---------VRPESLTAIEYSPDFV 86 (194)
T ss_pred HHHHHHhccCcccCCeeEEEcCCccHhH-------------HHHHhc-------C---------CCccceEEEEeCHHHH
Confidence 3567888889999999999999999999 555440 0 1356799999999999
Q ss_pred HHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCC-----CCCCceeEEeeeehhhcccc--
Q psy1420 111 RFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELP-----IESDSYSAYTIAFGIRNVTR-- 183 (241)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~~~~~D~V~~~~~l~~~~~-- 183 (241)
....+... ...++++|+..+. .....||.|+|+.-+.+++-
T Consensus 87 ~~L~~~~p--------------------------------~~~ii~gda~~l~~~l~e~~gq~~D~viS~lPll~~P~~~ 134 (194)
T COG3963 87 CHLNQLYP--------------------------------GVNIINGDAFDLRTTLGEHKGQFFDSVISGLPLLNFPMHR 134 (194)
T ss_pred HHHHHhCC--------------------------------CccccccchhhHHHHHhhcCCCeeeeEEeccccccCcHHH
Confidence 98887654 3557888877764 33557999999988887763
Q ss_pred HHHHHHHHHHhccCCcEEEEEecCHHHHHHHHHHCC-CceEEEEEe--cCceeEEEeeec
Q psy1420 184 IDKALSEAYRVLKPGGRFLCLEFSHEEFKSMIESAG-FQYVTYENL--TFGVVAIHSGFK 240 (241)
Q Consensus 184 ~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~l~~~G-f~~~~~~~~--~~~~~~~~~~~~ 240 (241)
..+.|+.+...|.+||.++-.++++ +...+...| |.+..+... ++.-+.+|+.++
T Consensus 135 ~iaile~~~~rl~~gg~lvqftYgp--~s~v~l~r~~y~v~~~~~vvRN~PPA~v~~~~~ 192 (194)
T COG3963 135 RIAILESLLYRLPAGGPLVQFTYGP--LSPVLLGRGDYNVQHFDFVVRNFPPAQVWIYRR 192 (194)
T ss_pred HHHHHHHHHHhcCCCCeEEEEEecC--CCcccccccceeEEEeeEEEecCCceeEEEeec
Confidence 4688999999999999999888764 122222233 333333333 456666666554
No 184
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.21 E-value=3.3e-05 Score=70.07 Aligned_cols=140 Identities=11% Similarity=0.091 Sum_probs=83.7
Q ss_pred CCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCC
Q psy1420 43 HDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPI 122 (241)
Q Consensus 43 ~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~ 122 (241)
++.++||||||+|... +.++. .. ....++++|+++.+++.|+.++.
T Consensus 114 ~~~~vLDIGtGag~I~-----------------~lLa~---~~----------~~~~~~atDId~~Al~~A~~Nv~---- 159 (321)
T PRK11727 114 ANVRVLDIGVGANCIY-----------------PLIGV---HE----------YGWRFVGSDIDPQALASAQAIIS---- 159 (321)
T ss_pred CCceEEEecCCccHHH-----------------HHHHh---hC----------CCCEEEEEeCCHHHHHHHHHHHH----
Confidence 5678999999998665 32221 11 24579999999999999999998
Q ss_pred ccccccccceecceeeeeecccc-CCCCCCeeEEe-cccCCCC----CCCCceeEEeeeehhhccccH-----HHHHHH-
Q psy1420 123 ESDSYSAYTIAFGIRNVTRIDKI-DIPNPRLRFLE-ANAEELP----IESDSYSAYTIAFGIRNVTRI-----DKALSE- 190 (241)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~d~~~~~----~~~~~~D~V~~~~~l~~~~~~-----~~~l~~- 190 (241)
.. ++. .+++++. .+..... .+.+.||+|+|+--++.-... ..-.+.
T Consensus 160 ---------------------~Np~l~-~~I~~~~~~~~~~i~~~i~~~~~~fDlivcNPPf~~s~~ea~~~~~rk~r~~ 217 (321)
T PRK11727 160 ---------------------ANPGLN-GAIRLRLQKDSKAIFKGIIHKNERFDATLCNPPFHASAAEARAGSQRKLRNL 217 (321)
T ss_pred ---------------------hccCCc-CcEEEEEccchhhhhhcccccCCceEEEEeCCCCcCcchhhccchhhHHhhh
Confidence 44 344 4566643 2222211 135689999998554421110 111111
Q ss_pred ---------------HHHhccCCcEEEEEecCH-----------------------HHHHHHHHHCCCceEEEEEec-Cc
Q psy1420 191 ---------------AYRVLKPGGRFLCLEFSH-----------------------EEFKSMIESAGFQYVTYENLT-FG 231 (241)
Q Consensus 191 ---------------~~~~LkpgG~l~i~~~~~-----------------------~~~~~~l~~~Gf~~~~~~~~~-~~ 231 (241)
..+++.+||.+.++.--. +.+.+.|++.|...++...+. +.
T Consensus 218 ar~~~~~~~l~f~g~~~EL~~~GGe~~fi~~mi~eS~~~~~~~gwftsmv~kk~~l~~l~~~L~~~~~~~~~~~e~~qG~ 297 (321)
T PRK11727 218 GLNKDKKKVLNFGGQQAELWCEGGEVAFIKRMIEESKAFAKQVLWFTSLVSKKENLPPLYRALKKVGAVEVKTIEMAQGQ 297 (321)
T ss_pred hccCCCccccCCcchhhheeeCCcEeeeehHhhHHHHHHHhhCcEEEEEeeccCCHHHHHHHHHHcCCceEEEEEEeCCC
Confidence 234455778765543111 888999999999666666553 33
Q ss_pred eeEEEee
Q psy1420 232 VVAIHSG 238 (241)
Q Consensus 232 ~~~~~~~ 238 (241)
-..-++|
T Consensus 298 ~~~~~va 304 (321)
T PRK11727 298 KQSRFIA 304 (321)
T ss_pred eeeEEEE
Confidence 3333343
No 185
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=98.21 E-value=1.9e-05 Score=70.04 Aligned_cols=133 Identities=10% Similarity=0.030 Sum_probs=78.8
Q ss_pred HHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHH
Q psy1420 33 DIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRF 112 (241)
Q Consensus 33 ~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~ 112 (241)
..+...+..-...+|||+|+|+|..+ ..+.+..+ ...+++++|.|+.|++.
T Consensus 23 ~El~~r~p~f~P~~vLD~GsGpGta~-------------wAa~~~~~----------------~~~~~~~vd~s~~~~~l 73 (274)
T PF09243_consen 23 SELRKRLPDFRPRSVLDFGSGPGTAL-------------WAAREVWP----------------SLKEYTCVDRSPEMLEL 73 (274)
T ss_pred HHHHHhCcCCCCceEEEecCChHHHH-------------HHHHHHhc----------------CceeeeeecCCHHHHHH
Confidence 34444444344559999999999765 22223111 24578999999999999
Q ss_pred HHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhcccc--HHHHHHH
Q psy1420 113 LEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTR--IDKALSE 190 (241)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~--~~~~l~~ 190 (241)
++......+. .. .... ..+......+..+.|+|+++++|..+++ ...+++.
T Consensus 74 ~~~l~~~~~~------------------------~~--~~~~-~~~~~~~~~~~~~~DLvi~s~~L~EL~~~~r~~lv~~ 126 (274)
T PF09243_consen 74 AKRLLRAGPN------------------------NR--NAEW-RRVLYRDFLPFPPDDLVIASYVLNELPSAARAELVRS 126 (274)
T ss_pred HHHHHhcccc------------------------cc--cchh-hhhhhcccccCCCCcEEEEehhhhcCCchHHHHHHHH
Confidence 9887662110 00 0001 0111110011122399999999998876 2344444
Q ss_pred HHHhccCCcEEEEEecCH-------HHHHHHHHHCCCceE
Q psy1420 191 AYRVLKPGGRFLCLEFSH-------EEFKSMIESAGFQYV 223 (241)
Q Consensus 191 ~~~~LkpgG~l~i~~~~~-------~~~~~~l~~~Gf~~~ 223 (241)
+-+.+. +.|++++.+. .+.++.+.+.|+.++
T Consensus 127 LW~~~~--~~LVlVEpGt~~Gf~~i~~aR~~l~~~~~~v~ 164 (274)
T PF09243_consen 127 LWNKTA--PVLVLVEPGTPAGFRRIAEARDQLLEKGAHVV 164 (274)
T ss_pred HHHhcc--CcEEEEcCCChHHHHHHHHHHHHHhhCCCceE
Confidence 444444 4888888777 777788877777653
No 186
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.20 E-value=6e-06 Score=72.47 Aligned_cols=88 Identities=11% Similarity=0.169 Sum_probs=67.6
Q ss_pred HHHHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChH
Q psy1420 29 RLWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNP 108 (241)
Q Consensus 29 ~~~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~ 108 (241)
..+.+.+.+.++..++.+|||+|||+|..+ ..++. ....++++|+++.
T Consensus 15 ~~~~~~iv~~~~~~~~~~VLEIG~G~G~lt-------------~~L~~-------------------~~~~v~~vEid~~ 62 (258)
T PRK14896 15 DRVVDRIVEYAEDTDGDPVLEIGPGKGALT-------------DELAK-------------------RAKKVYAIELDPR 62 (258)
T ss_pred HHHHHHHHHhcCCCCcCeEEEEeCccCHHH-------------HHHHH-------------------hCCEEEEEECCHH
Confidence 345566777777778889999999999998 44444 2457999999999
Q ss_pred hHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhh
Q psy1420 109 RLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIR 179 (241)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~ 179 (241)
+++.+++++. . . ++++++++|+...+.+ .+|.|+++...+
T Consensus 63 ~~~~l~~~~~-------------------------~--~--~~v~ii~~D~~~~~~~--~~d~Vv~NlPy~ 102 (258)
T PRK14896 63 LAEFLRDDEI-------------------------A--A--GNVEIIEGDALKVDLP--EFNKVVSNLPYQ 102 (258)
T ss_pred HHHHHHHHhc-------------------------c--C--CCEEEEEeccccCCch--hceEEEEcCCcc
Confidence 9999987765 2 1 3689999999887754 479998875543
No 187
>KOG2915|consensus
Probab=98.20 E-value=3.6e-05 Score=67.77 Aligned_cols=135 Identities=13% Similarity=0.116 Sum_probs=101.0
Q ss_pred HHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHH
Q psy1420 33 DIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRF 112 (241)
Q Consensus 33 ~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~ 112 (241)
..++..++.+||.+|+|-|+|+|..+ ..++..+| +..+++..|+.....+.
T Consensus 95 a~I~~~L~i~PGsvV~EsGTGSGSlS-------------haiaraV~----------------ptGhl~tfefH~~Ra~k 145 (314)
T KOG2915|consen 95 AMILSMLEIRPGSVVLESGTGSGSLS-------------HAIARAVA----------------PTGHLYTFEFHETRAEK 145 (314)
T ss_pred HHHHHHhcCCCCCEEEecCCCcchHH-------------HHHHHhhC----------------cCcceEEEEecHHHHHH
Confidence 45667778899999999999999999 55555443 56789999998888888
Q ss_pred HHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCC--CCceeEEeeeehhhccccHHHHHHH
Q psy1420 113 LEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIE--SDSYSAYTIAFGIRNVTRIDKALSE 190 (241)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~~D~V~~~~~l~~~~~~~~~l~~ 190 (241)
+.+... ..+++ +++++..-|+....+. +..+|+|+. .++.|..++-.
T Consensus 146 a~eeFr-------------------------~hgi~-~~vt~~hrDVc~~GF~~ks~~aDaVFL-----DlPaPw~AiPh 194 (314)
T KOG2915|consen 146 ALEEFR-------------------------EHGIG-DNVTVTHRDVCGSGFLIKSLKADAVFL-----DLPAPWEAIPH 194 (314)
T ss_pred HHHHHH-------------------------HhCCC-cceEEEEeecccCCccccccccceEEE-----cCCChhhhhhh
Confidence 888877 66666 7889998888876543 568899984 56788888888
Q ss_pred HHHhccCCc-EEEEEecCH---HHHHHHHHHCCCceEEEEE
Q psy1420 191 AYRVLKPGG-RFLCLEFSH---EEFKSMIESAGFQYVTYEN 227 (241)
Q Consensus 191 ~~~~LkpgG-~l~i~~~~~---~~~~~~l~~~Gf~~~~~~~ 227 (241)
+.++||.+| +++..+... +.--+.+.++||..+.+..
T Consensus 195 a~~~lk~~g~r~csFSPCIEQvqrtce~l~~~gf~~i~~vE 235 (314)
T KOG2915|consen 195 AAKILKDEGGRLCSFSPCIEQVQRTCEALRSLGFIEIETVE 235 (314)
T ss_pred hHHHhhhcCceEEeccHHHHHHHHHHHHHHhCCCceEEEEE
Confidence 999999877 554333222 4445678899986554443
No 188
>KOG3987|consensus
Probab=98.20 E-value=1.7e-06 Score=73.45 Aligned_cols=118 Identities=16% Similarity=0.217 Sum_probs=88.7
Q ss_pred CCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCC
Q psy1420 43 HDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPI 122 (241)
Q Consensus 43 ~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~ 122 (241)
.+.++||+|+|.|..+ .++.| ...++++++.|..|....+++-.
T Consensus 112 ~~~~lLDlGAGdGeit-------------~~m~p-------------------~feevyATElS~tMr~rL~kk~y---- 155 (288)
T KOG3987|consen 112 EPVTLLDLGAGDGEIT-------------LRMAP-------------------TFEEVYATELSWTMRDRLKKKNY---- 155 (288)
T ss_pred CCeeEEeccCCCcchh-------------hhhcc-------------------hHHHHHHHHhhHHHHHHHhhcCC----
Confidence 3468999999999999 77777 45679999999999988875532
Q ss_pred ccccccccceecceeeeeeccccCCCCCCeeEE-ecccCCCCCCCCceeEEeeeehhhccccHHHHHHHHHHhccC-CcE
Q psy1420 123 ESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFL-EANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKP-GGR 200 (241)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~Lkp-gG~ 200 (241)
.++ ..+..+. +-++|+|.|-..+..--++-+.|+.++.+|.| +|+
T Consensus 156 ------------------------------nVl~~~ew~~t---~~k~dli~clNlLDRc~~p~kLL~Di~~vl~psngr 202 (288)
T KOG3987|consen 156 ------------------------------NVLTEIEWLQT---DVKLDLILCLNLLDRCFDPFKLLEDIHLVLAPSNGR 202 (288)
T ss_pred ------------------------------ceeeehhhhhc---CceeehHHHHHHHHhhcChHHHHHHHHHHhccCCCc
Confidence 111 1111111 34699999998888777899999999999999 888
Q ss_pred EEEEe---cCH----------------------------HHHHHHHHHCCCceEEEEEec
Q psy1420 201 FLCLE---FSH----------------------------EEFKSMIESAGFQYVTYENLT 229 (241)
Q Consensus 201 l~i~~---~~~----------------------------~~~~~~l~~~Gf~~~~~~~~~ 229 (241)
+++.- +.+ ..+-++++.+||++....++.
T Consensus 203 vivaLVLP~~hYVE~N~~g~~~rPdn~Le~~Gr~~ee~v~~~~e~lr~~g~~veawTrlP 262 (288)
T KOG3987|consen 203 VIVALVLPYMHYVETNTSGLPLRPDNLLENNGRSFEEEVARFMELLRNCGYRVEAWTRLP 262 (288)
T ss_pred EEEEEEecccceeecCCCCCcCCchHHHHhcCccHHHHHHHHHHHHHhcCchhhhhhcCC
Confidence 77632 111 556778999999988777664
No 189
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.19 E-value=1.4e-05 Score=69.82 Aligned_cols=85 Identities=12% Similarity=0.139 Sum_probs=63.7
Q ss_pred HHHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHh
Q psy1420 30 LWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPR 109 (241)
Q Consensus 30 ~~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~ 109 (241)
.+.+.+.+.+...++.+|||+|||+|..+ ..++. ....++++|+++.+
T Consensus 16 ~i~~~i~~~~~~~~~~~VLEiG~G~G~lt-------------~~L~~-------------------~~~~v~~iE~d~~~ 63 (253)
T TIGR00755 16 SVIQKIVEAANVLEGDVVLEIGPGLGALT-------------EPLLK-------------------RAKKVTAIEIDPRL 63 (253)
T ss_pred HHHHHHHHhcCCCCcCEEEEeCCCCCHHH-------------HHHHH-------------------hCCcEEEEECCHHH
Confidence 34566777777778889999999999998 44444 23469999999999
Q ss_pred HHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCcee---EEeeeeh
Q psy1420 110 LRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYS---AYTIAFG 177 (241)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D---~V~~~~~ 177 (241)
++.++.+.. . .++++++++|+...+.+ .+| .|+++..
T Consensus 64 ~~~l~~~~~-------------------------~----~~~v~v~~~D~~~~~~~--~~d~~~~vvsNlP 103 (253)
T TIGR00755 64 AEILRKLLS-------------------------L----YERLEVIEGDALKVDLP--DFPKQLKVVSNLP 103 (253)
T ss_pred HHHHHHHhC-------------------------c----CCcEEEEECchhcCChh--HcCCcceEEEcCC
Confidence 999887654 1 14688999999888764 455 6665544
No 190
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.19 E-value=5.5e-06 Score=74.31 Aligned_cols=89 Identities=13% Similarity=0.204 Sum_probs=68.0
Q ss_pred HHHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHh
Q psy1420 30 LWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPR 109 (241)
Q Consensus 30 ~~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~ 109 (241)
.+.+.+.+.....++.+|||+|||+|..+ ..++. ...+++++|+++.+
T Consensus 23 ~i~~~Iv~~~~~~~~~~VLEIG~G~G~LT-------------~~Ll~-------------------~~~~V~avEiD~~l 70 (294)
T PTZ00338 23 LVLDKIVEKAAIKPTDTVLEIGPGTGNLT-------------EKLLQ-------------------LAKKVIAIEIDPRM 70 (294)
T ss_pred HHHHHHHHhcCCCCcCEEEEecCchHHHH-------------HHHHH-------------------hCCcEEEEECCHHH
Confidence 45566777777788889999999999998 54444 34579999999999
Q ss_pred HHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehh
Q psy1420 110 LRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGI 178 (241)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l 178 (241)
++.+++++. ..+.. ++++++++|+...+.+ .+|.|+++...
T Consensus 71 i~~l~~~~~-------------------------~~~~~-~~v~ii~~Dal~~~~~--~~d~VvaNlPY 111 (294)
T PTZ00338 71 VAELKKRFQ-------------------------NSPLA-SKLEVIEGDALKTEFP--YFDVCVANVPY 111 (294)
T ss_pred HHHHHHHHH-------------------------hcCCC-CcEEEEECCHhhhccc--ccCEEEecCCc
Confidence 999998876 33322 4789999999876543 58988865443
No 191
>KOG2904|consensus
Probab=98.12 E-value=2e-05 Score=69.50 Aligned_cols=119 Identities=18% Similarity=0.317 Sum_probs=79.4
Q ss_pred HHHHHHhhcCC---CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCCh
Q psy1420 31 WKDIFIDRLGP---THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPN 107 (241)
Q Consensus 31 ~~~~~~~~l~~---~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~ 107 (241)
|.+.+.+.++. .++..+||+|||+|..+ ..++. +. +.+.++++|.|+
T Consensus 133 ~V~~Vid~~~~~~~~~~~~ildlgtGSGaIs-------------lsll~-------~L----------~~~~v~AiD~S~ 182 (328)
T KOG2904|consen 133 WVEAVIDALNNSEHSKHTHILDLGTGSGAIS-------------LSLLH-------GL----------PQCTVTAIDVSK 182 (328)
T ss_pred HHHHHHHHHhhhhhcccceEEEecCCccHHH-------------HHHHh-------cC----------CCceEEEEeccH
Confidence 44444444432 34558999999999988 44433 11 367899999999
Q ss_pred HhHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCC-----CCCCCceeEEeeeeh--hh-
Q psy1420 108 PRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL-----PIESDSYSAYTIAFG--IR- 179 (241)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-----~~~~~~~D~V~~~~~--l~- 179 (241)
.++..+.+++. +.++. +++.+++.+.+.. +...+++|+++++-- -+
T Consensus 183 ~Ai~La~eN~q-------------------------r~~l~-g~i~v~~~~me~d~~~~~~l~~~~~dllvsNPPYI~~d 236 (328)
T KOG2904|consen 183 AAIKLAKENAQ-------------------------RLKLS-GRIEVIHNIMESDASDEHPLLEGKIDLLVSNPPYIRKD 236 (328)
T ss_pred HHHHHHHHHHH-------------------------HHhhc-CceEEEecccccccccccccccCceeEEecCCCccccc
Confidence 99999999988 66665 5777775543332 234578999887621 11
Q ss_pred ---c--------------------cccHHHHHHHHHHhccCCcEEEEEe
Q psy1420 180 ---N--------------------VTRIDKALSEAYRVLKPGGRFLCLE 205 (241)
Q Consensus 180 ---~--------------------~~~~~~~l~~~~~~LkpgG~l~i~~ 205 (241)
. .......+.-+.|+|+|||.+.+..
T Consensus 237 D~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~ 285 (328)
T KOG2904|consen 237 DNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLEL 285 (328)
T ss_pred chhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEe
Confidence 0 0012355677889999999988743
No 192
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.10 E-value=2e-05 Score=75.68 Aligned_cols=124 Identities=13% Similarity=0.119 Sum_probs=87.1
Q ss_pred CCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCC
Q psy1420 43 HDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPI 122 (241)
Q Consensus 43 ~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~ 122 (241)
.+..+||+|||.|.+. ..++. .. +...++|+|+....+..+.+++.
T Consensus 347 ~~p~~lEIG~G~G~~~-------------~~~A~-------~~----------p~~~~iGiE~~~~~~~~~~~~~~---- 392 (506)
T PRK01544 347 KRKVFLEIGFGMGEHF-------------INQAK-------MN----------PDALFIGVEVYLNGVANVLKLAG---- 392 (506)
T ss_pred CCceEEEECCCchHHH-------------HHHHH-------hC----------CCCCEEEEEeeHHHHHHHHHHHH----
Confidence 4557999999999987 44433 12 46789999999998888887776
Q ss_pred ccccccccceecceeeeeeccccCCCCCCeeEEecccCCC--CCCCCceeEEeeeehhhccc-----c---HHHHHHHHH
Q psy1420 123 ESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL--PIESDSYSAYTIAFGIRNVT-----R---IDKALSEAY 192 (241)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~D~V~~~~~l~~~~-----~---~~~~l~~~~ 192 (241)
+.++. ++.+++.|+..+ -++++++|.|+.++.=-|.. . -..+++.+.
T Consensus 393 ---------------------~~~l~--N~~~~~~~~~~~~~~~~~~sv~~i~i~FPDPWpKkrh~krRl~~~~fl~~~~ 449 (506)
T PRK01544 393 ---------------------EQNIT--NFLLFPNNLDLILNDLPNNSLDGIYILFPDPWIKNKQKKKRIFNKERLKILQ 449 (506)
T ss_pred ---------------------HcCCC--eEEEEcCCHHHHHHhcCcccccEEEEECCCCCCCCCCccccccCHHHHHHHH
Confidence 55554 677777776533 24567899998765432211 1 158999999
Q ss_pred HhccCCcEEEEEecCH---HHHHHHHHHCC-CceE
Q psy1420 193 RVLKPGGRFLCLEFSH---EEFKSMIESAG-FQYV 223 (241)
Q Consensus 193 ~~LkpgG~l~i~~~~~---~~~~~~l~~~G-f~~~ 223 (241)
++|||||.+.+.+-.. ....+.+.+.+ |...
T Consensus 450 ~~Lk~gG~i~~~TD~~~y~~~~~~~~~~~~~f~~~ 484 (506)
T PRK01544 450 DKLKDNGNLVFASDIENYFYEAIELIQQNGNFEII 484 (506)
T ss_pred HhcCCCCEEEEEcCCHHHHHHHHHHHHhCCCeEec
Confidence 9999999999876555 44455556655 7654
No 193
>KOG1331|consensus
Probab=98.09 E-value=3.4e-06 Score=74.52 Aligned_cols=99 Identities=24% Similarity=0.241 Sum_probs=78.5
Q ss_pred CCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCC
Q psy1420 43 HDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPI 122 (241)
Q Consensus 43 ~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~ 122 (241)
.+..++|+|||.|... .+ .+.....+.|.+...+..+++.-
T Consensus 45 ~gsv~~d~gCGngky~----------------~~------------------~p~~~~ig~D~c~~l~~~ak~~~----- 85 (293)
T KOG1331|consen 45 TGSVGLDVGCGNGKYL----------------GV------------------NPLCLIIGCDLCTGLLGGAKRSG----- 85 (293)
T ss_pred CcceeeecccCCcccC----------------cC------------------CCcceeeecchhhhhccccccCC-----
Confidence 4778999999999866 11 14567889998887776665321
Q ss_pred ccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccc---cHHHHHHHHHHhccCCc
Q psy1420 123 ESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVT---RIDKALSEAYRVLKPGG 199 (241)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~---~~~~~l~~~~~~LkpgG 199 (241)
......+|+..+|+++.+||.+++..++||+. ....+++++.|+++|||
T Consensus 86 ----------------------------~~~~~~ad~l~~p~~~~s~d~~lsiavihhlsT~~RR~~~l~e~~r~lrpgg 137 (293)
T KOG1331|consen 86 ----------------------------GDNVCRADALKLPFREESFDAALSIAVIHHLSTRERRERALEELLRVLRPGG 137 (293)
T ss_pred ----------------------------CceeehhhhhcCCCCCCccccchhhhhhhhhhhHHHHHHHHHHHHHHhcCCC
Confidence 12567899999999999999999999999875 45799999999999999
Q ss_pred EEEEEecCH
Q psy1420 200 RFLCLEFSH 208 (241)
Q Consensus 200 ~l~i~~~~~ 208 (241)
..++..+..
T Consensus 138 ~~lvyvwa~ 146 (293)
T KOG1331|consen 138 NALVYVWAL 146 (293)
T ss_pred ceEEEEehh
Confidence 988766554
No 194
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=98.06 E-value=5.2e-06 Score=78.39 Aligned_cols=69 Identities=20% Similarity=0.269 Sum_probs=52.0
Q ss_pred ccCCCCCCCCceeEEeeeehhhcc-ccHHHHHHHHHHhccCCcEEEEEecCH------------HHHHHHHHHCCCceEE
Q psy1420 158 NAEELPIESDSYSAYTIAFGIRNV-TRIDKALSEAYRVLKPGGRFLCLEFSH------------EEFKSMIESAGFQYVT 224 (241)
Q Consensus 158 d~~~~~~~~~~~D~V~~~~~l~~~-~~~~~~l~~~~~~LkpgG~l~i~~~~~------------~~~~~~l~~~Gf~~~~ 224 (241)
....+|+++..||+|.|+.++..+ ++-...|-++.|+|+|||+++.+.... ..++++.++..++.+.
T Consensus 171 ~s~rLPfp~~~fDmvHcsrc~i~W~~~~g~~l~evdRvLRpGGyfv~S~ppv~~r~~~~~~~~~~~~~~l~~~lCW~~va 250 (506)
T PF03141_consen 171 GSQRLPFPSNAFDMVHCSRCLIPWHPNDGFLLFEVDRVLRPGGYFVLSGPPVYQRTDEDLEEEWNAMEDLAKSLCWKKVA 250 (506)
T ss_pred ccccccCCccchhhhhcccccccchhcccceeehhhhhhccCceEEecCCcccccchHHHHHHHHHHHHHHHHHHHHHhe
Confidence 356789999999999999887654 334578899999999999998865321 5666777777776555
Q ss_pred EE
Q psy1420 225 YE 226 (241)
Q Consensus 225 ~~ 226 (241)
.+
T Consensus 251 ~~ 252 (506)
T PF03141_consen 251 EK 252 (506)
T ss_pred ee
Confidence 44
No 195
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=98.06 E-value=1.3e-05 Score=71.52 Aligned_cols=142 Identities=18% Similarity=0.224 Sum_probs=92.7
Q ss_pred HHHHHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCCh
Q psy1420 28 HRLWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPN 107 (241)
Q Consensus 28 ~~~~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~ 107 (241)
++..+..+.+. .++.+||++=|-||.++ ...+. ....+++.+|.|.
T Consensus 111 qR~nR~~v~~~---~~gkrvLnlFsYTGgfs-------------v~Aa~------------------gGA~~v~~VD~S~ 156 (286)
T PF10672_consen 111 QRENRKWVRKY---AKGKRVLNLFSYTGGFS-------------VAAAA------------------GGAKEVVSVDSSK 156 (286)
T ss_dssp GHHHHHHHHHH---CTTCEEEEET-TTTHHH-------------HHHHH------------------TTESEEEEEES-H
T ss_pred HHhhHHHHHHH---cCCCceEEecCCCCHHH-------------HHHHH------------------CCCCEEEEEeCCH
Confidence 34445555554 34679999999999988 33332 0234799999999
Q ss_pred HhHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCC-C--CCCCceeEEeee---eh---h
Q psy1420 108 PRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL-P--IESDSYSAYTIA---FG---I 178 (241)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~--~~~~~~D~V~~~---~~---l 178 (241)
.+++.+++++. -++++..++++++.|+... . -..++||+|++- +. .
T Consensus 157 ~al~~a~~N~~-------------------------lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIlDPPsF~k~~~ 211 (286)
T PF10672_consen 157 RALEWAKENAA-------------------------LNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIILDPPSFAKSKF 211 (286)
T ss_dssp HHHHHHHHHHH-------------------------HTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE--SSEESSTC
T ss_pred HHHHHHHHHHH-------------------------HcCCCccceEEEecCHHHHHHHHhcCCCCCEEEECCCCCCCCHH
Confidence 99999999988 5566556789999997652 1 124589999963 11 1
Q ss_pred hccccHHHHHHHHHHhccCCcEEEEEecCH----HHHHHHHHHCCCceEEEEEe
Q psy1420 179 RNVTRIDKALSEAYRVLKPGGRFLCLEFSH----EEFKSMIESAGFQYVTYENL 228 (241)
Q Consensus 179 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~----~~~~~~l~~~Gf~~~~~~~~ 228 (241)
.-..+..+.+..+.++|+|||.|+++..++ +.+.+.+.+++-++.-.+++
T Consensus 212 ~~~~~y~~L~~~a~~ll~~gG~l~~~scs~~i~~~~l~~~~~~~a~~~~~~~~~ 265 (286)
T PF10672_consen 212 DLERDYKKLLRRAMKLLKPGGLLLTCSCSHHISPDFLLEAVAEAAREVEFIERL 265 (286)
T ss_dssp EHHHHHHHHHHHHHHTEEEEEEEEEEE--TTS-HHHHHHHHHHHHHHCEEEEEE
T ss_pred HHHHHHHHHHHHHHHhcCCCCEEEEEcCCcccCHHHHHHHHHHhCccceEeeee
Confidence 112356788899999999999988776555 66777777666444444444
No 196
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=98.00 E-value=0.00017 Score=66.51 Aligned_cols=149 Identities=17% Similarity=0.109 Sum_probs=100.9
Q ss_pred HHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcC--CCcch------------hhhc--
Q psy1420 31 WKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQ--WKPYQ------------YLVE-- 94 (241)
Q Consensus 31 ~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~------------~~~~-- 94 (241)
+...++.+.+++++..++|..||+|++. +..+- +..+ |+.++ =||+
T Consensus 179 LAaAil~lagw~~~~pl~DPmCGSGTi~-------------IEAAl-----~~~niAPg~~R~~~f~~w~~~~~~lw~~~ 240 (381)
T COG0116 179 LAAAILLLAGWKPDEPLLDPMCGSGTIL-------------IEAAL-----IAANIAPGLNRRFGFEFWDWFDKDLWDKL 240 (381)
T ss_pred HHHHHHHHcCCCCCCccccCCCCccHHH-------------HHHHH-----hccccCCccccccchhhhhhccHHHHHHH
Confidence 3456777778888889999999999987 44432 1110 10000 0000
Q ss_pred -----------ccCCCceeecCChHhHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCC
Q psy1420 95 -----------SIRQFPNQIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELP 163 (241)
Q Consensus 95 -----------~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 163 (241)
.....++|.|+++.+++.|+.++. ..++. +.+.|.+.|+..++
T Consensus 241 ~~ea~~~a~~~~~~~~~~G~Did~r~i~~Ak~NA~-------------------------~AGv~-d~I~f~~~d~~~l~ 294 (381)
T COG0116 241 REEAEERARRGKELPIIYGSDIDPRHIEGAKANAR-------------------------AAGVG-DLIEFKQADATDLK 294 (381)
T ss_pred HHHHHHHHhhcCccceEEEecCCHHHHHHHHHHHH-------------------------hcCCC-ceEEEEEcchhhCC
Confidence 001147799999999999999999 88887 78999999999886
Q ss_pred CCCCceeEEeee--ehhhcccc------HHHHHHHHHHhccCCcEEEEEecCHHHHHHHHHHCCCceE
Q psy1420 164 IESDSYSAYTIA--FGIRNVTR------IDKALSEAYRVLKPGGRFLCLEFSHEEFKSMIESAGFQYV 223 (241)
Q Consensus 164 ~~~~~~D~V~~~--~~l~~~~~------~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~l~~~Gf~~~ 223 (241)
.+.+.+|+|+|+ ++.+--.. ...+.+.+.+.++--++.+++..........+++.++...
T Consensus 295 ~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~ws~~v~tt~e~~~~~~~~ra~~~~~~ 362 (381)
T COG0116 295 EPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAGWSRYVFTTSEDLLFCLGLRADKKRKL 362 (381)
T ss_pred CCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcCCceEEEEccHHHHHHHhhhhccceee
Confidence 544689999997 45442222 2355566777777777888777666666666666665433
No 197
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=97.99 E-value=0.00018 Score=61.80 Aligned_cols=131 Identities=16% Similarity=0.165 Sum_probs=88.7
Q ss_pred cCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHh
Q psy1420 39 LGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAE 118 (241)
Q Consensus 39 l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~ 118 (241)
+..++|.+||-+|.++|++. .++..++| ..+.++++|.|+...+.....+.
T Consensus 69 ~~ik~gskVLYLGAasGTTV-------------SHvSDIvg----------------~~G~VYaVEfs~r~~rdL~~la~ 119 (229)
T PF01269_consen 69 IPIKPGSKVLYLGAASGTTV-------------SHVSDIVG----------------PDGVVYAVEFSPRSMRDLLNLAK 119 (229)
T ss_dssp -S--TT-EEEEETTTTSHHH-------------HHHHHHHT----------------TTSEEEEEESSHHHHHHHHHHHH
T ss_pred cCCCCCCEEEEecccCCCcc-------------chhhhccC----------------CCCcEEEEEecchhHHHHHHHhc
Confidence 44689999999999999998 78877555 46789999999987766655554
Q ss_pred cCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCC---CCCCceeEEeeeehhhccccHHHHHHHHHHhc
Q psy1420 119 ELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELP---IESDSYSAYTIAFGIRNVTRIDKALSEAYRVL 195 (241)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~L 195 (241)
+. +++-.+-.|+..+. .--+.+|+|++.-. .-....-++.++...|
T Consensus 120 -------------------------~R----~NIiPIl~DAr~P~~Y~~lv~~VDvI~~DVa--Qp~Qa~I~~~Na~~fL 168 (229)
T PF01269_consen 120 -------------------------KR----PNIIPILEDARHPEKYRMLVEMVDVIFQDVA--QPDQARIAALNARHFL 168 (229)
T ss_dssp -------------------------HS----TTEEEEES-TTSGGGGTTTS--EEEEEEE-S--STTHHHHHHHHHHHHE
T ss_pred -------------------------cC----CceeeeeccCCChHHhhcccccccEEEecCC--ChHHHHHHHHHHHhhc
Confidence 11 36777788887652 11348999986322 1223345677888899
Q ss_pred cCCcEEEEEecCH------------HHHHHHHHHCCCceEEEEEec
Q psy1420 196 KPGGRFLCLEFSH------------EEFKSMIESAGFQYVTYENLT 229 (241)
Q Consensus 196 kpgG~l~i~~~~~------------~~~~~~l~~~Gf~~~~~~~~~ 229 (241)
|+||.++++--.. .+-.+.|++.||++.+..++.
T Consensus 169 k~gG~~~i~iKa~siD~t~~p~~vf~~e~~~L~~~~~~~~e~i~Le 214 (229)
T PF01269_consen 169 KPGGHLIISIKARSIDSTADPEEVFAEEVKKLKEEGFKPLEQITLE 214 (229)
T ss_dssp EEEEEEEEEEEHHHH-SSSSHHHHHHHHHHHHHCTTCEEEEEEE-T
T ss_pred cCCcEEEEEEecCcccCcCCHHHHHHHHHHHHHHcCCChheEeccC
Confidence 9999988764222 555677888999998888873
No 198
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=97.99 E-value=3.4e-05 Score=69.07 Aligned_cols=177 Identities=15% Similarity=0.174 Sum_probs=95.7
Q ss_pred hHHHHHhhhhhccccch--hhhhhhhHHHHHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhh
Q psy1420 4 PMYEVFENVAKSYDTMN--DAMSFGIHRLWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQL 81 (241)
Q Consensus 4 ~~~~~f~~~~~~yd~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (241)
-+.++|+.+.+.+.... ..-.+.-.+.+.+.+.+.+.+.++.+|+|.+||+|.+. ..+.. .
T Consensus 5 ~~g~~yE~~l~~~~~~~~k~~G~~~TP~~i~~l~~~~~~~~~~~~VlDPacGsG~fL-------------~~~~~----~ 67 (311)
T PF02384_consen 5 ILGDLYEYFLKKFAKESRKKLGQFYTPREIVDLMVKLLNPKKGDSVLDPACGSGGFL-------------VAAME----Y 67 (311)
T ss_dssp HHHHHHHHHHHHHHHCTTTSCGGC---HHHHHHHHHHHTT-TTEEEEETT-TTSHHH-------------HHHHH----H
T ss_pred HHHHHHHHHHHHHHHHhccccceeehHHHHHHHHHhhhhccccceeechhhhHHHHH-------------HHHHH----h
Confidence 34566666655552211 00111113345567777778888889999999999976 33332 1
Q ss_pred hhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCC
Q psy1420 82 IAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEE 161 (241)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 161 (241)
+.... .+.....++|+|+++.+...+..++. -.+.......+...|...
T Consensus 68 i~~~~------~~~~~~~i~G~ei~~~~~~la~~nl~-------------------------l~~~~~~~~~i~~~d~l~ 116 (311)
T PF02384_consen 68 IKEKR------NKIKEINIYGIEIDPEAVALAKLNLL-------------------------LHGIDNSNINIIQGDSLE 116 (311)
T ss_dssp HHTCH------HHHCCEEEEEEES-HHHHHHHHHHHH-------------------------HTTHHCBGCEEEES-TTT
T ss_pred hcccc------cccccceeEeecCcHHHHHHHHhhhh-------------------------hhcccccccccccccccc
Confidence 10000 00135679999999999988877654 112221123466677554
Q ss_pred CCCC--CCceeEEeeeehhhcc--c-------------------cHHHHHHHHHHhccCCcEEEEEecCH--------HH
Q psy1420 162 LPIE--SDSYSAYTIAFGIRNV--T-------------------RIDKALSEAYRVLKPGGRFLCLEFSH--------EE 210 (241)
Q Consensus 162 ~~~~--~~~~D~V~~~~~l~~~--~-------------------~~~~~l~~~~~~LkpgG~l~i~~~~~--------~~ 210 (241)
.+.. ..+||+|+++--+... . ..-.++..+.+.|++||++.++.... ..
T Consensus 117 ~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp~~~L~~~~~~~~ 196 (311)
T PF02384_consen 117 NDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILPNGFLFSSSSEKK 196 (311)
T ss_dssp SHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEEHHHHHGSTHHHH
T ss_pred ccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEecchhhhccchHHH
Confidence 4432 4689999987322111 0 11257888999999999977654332 56
Q ss_pred HHHHHHHCCCceEEEEEec
Q psy1420 211 FKSMIESAGFQYVTYENLT 229 (241)
Q Consensus 211 ~~~~l~~~Gf~~~~~~~~~ 229 (241)
+++.|-+.+. +..+..+.
T Consensus 197 iR~~ll~~~~-i~aVI~Lp 214 (311)
T PF02384_consen 197 IRKYLLENGY-IEAVISLP 214 (311)
T ss_dssp HHHHHHHHEE-EEEEEE--
T ss_pred HHHHHHhhch-hhEEeecc
Confidence 7666665533 44444443
No 199
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=97.98 E-value=5e-05 Score=69.99 Aligned_cols=132 Identities=13% Similarity=0.111 Sum_probs=82.2
Q ss_pred HHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHH
Q psy1420 33 DIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRF 112 (241)
Q Consensus 33 ~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~ 112 (241)
+.+.+.+... +.++||++||+|.++ ..+.. ...+++++|.++.+++.
T Consensus 197 ~~v~~~~~~~-~~~vLDl~~G~G~~s-------------l~la~-------------------~~~~v~~vE~~~~ai~~ 243 (362)
T PRK05031 197 EWALDATKGS-KGDLLELYCGNGNFT-------------LALAR-------------------NFRRVLATEISKPSVAA 243 (362)
T ss_pred HHHHHHhhcC-CCeEEEEeccccHHH-------------HHHHh-------------------hCCEEEEEECCHHHHHH
Confidence 3344443322 347999999999998 43333 24579999999999999
Q ss_pred HHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCC-C-CC--------------CCceeEEeeee
Q psy1420 113 LEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL-P-IE--------------SDSYSAYTIAF 176 (241)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~-~~--------------~~~~D~V~~~~ 176 (241)
+++++. ..++. +++++.+|+... + .. ..+||+|+..=
T Consensus 244 a~~N~~-------------------------~~~~~--~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~D~v~lDP 296 (362)
T PRK05031 244 AQYNIA-------------------------ANGID--NVQIIRMSAEEFTQAMNGVREFNRLKGIDLKSYNFSTIFVDP 296 (362)
T ss_pred HHHHHH-------------------------HhCCC--cEEEEECCHHHHHHHHhhcccccccccccccCCCCCEEEECC
Confidence 999987 44543 678888887652 1 10 12589988532
Q ss_pred hhhccccHHHHHHHHHHhccCCcEEEEEecCH---HHHHHHHHHCCCceEEEEEecCc
Q psy1420 177 GIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH---EEFKSMIESAGFQYVTYENLTFG 231 (241)
Q Consensus 177 ~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~---~~~~~~l~~~Gf~~~~~~~~~~~ 231 (241)
- +. .-..+.+..+. +|++.++++--.. +++..+. + ||++.++..+.+-
T Consensus 297 P-R~-G~~~~~l~~l~---~~~~ivyvSC~p~tlarDl~~L~-~-gY~l~~v~~~DmF 347 (362)
T PRK05031 297 P-RA-GLDDETLKLVQ---AYERILYISCNPETLCENLETLS-Q-THKVERFALFDQF 347 (362)
T ss_pred C-CC-CCcHHHHHHHH---ccCCEEEEEeCHHHHHHHHHHHc-C-CcEEEEEEEcccC
Confidence 1 10 11134444444 3677766643322 5555544 3 9999888877543
No 200
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=97.94 E-value=8.7e-05 Score=68.18 Aligned_cols=132 Identities=10% Similarity=0.045 Sum_probs=82.4
Q ss_pred HHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHH
Q psy1420 32 KDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLR 111 (241)
Q Consensus 32 ~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~ 111 (241)
.+.+.+.+...+ .++||++||+|.++ ..+.. ....++++|+++.+++
T Consensus 187 ~~~v~~~~~~~~-~~vlDl~~G~G~~s-------------l~la~-------------------~~~~v~~vE~~~~av~ 233 (353)
T TIGR02143 187 LEWACEVTQGSK-GDLLELYCGNGNFS-------------LALAQ-------------------NFRRVLATEIAKPSVN 233 (353)
T ss_pred HHHHHHHhhcCC-CcEEEEeccccHHH-------------HHHHH-------------------hCCEEEEEECCHHHHH
Confidence 444455544323 47999999999998 43333 2357999999999999
Q ss_pred HHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCC-----------C-----CCceeEEeee
Q psy1420 112 FLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPI-----------E-----SDSYSAYTIA 175 (241)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-----------~-----~~~~D~V~~~ 175 (241)
.+++++. ..++. +++++++|+...-. . ...+|+|+..
T Consensus 234 ~a~~n~~-------------------------~~~~~--~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~lD 286 (353)
T TIGR02143 234 AAQYNIA-------------------------ANNID--NVQIIRMSAEEFTQAMNGVREFRRLKGIDLKSYNCSTIFVD 286 (353)
T ss_pred HHHHHHH-------------------------HcCCC--cEEEEEcCHHHHHHHHhhccccccccccccccCCCCEEEEC
Confidence 9999987 44544 57888888765210 0 1137888753
Q ss_pred ehhhccccHHHHHHHHHHhccCCcEEEEEecCH---HHHHHHHHHCCCceEEEEEecC
Q psy1420 176 FGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH---EEFKSMIESAGFQYVTYENLTF 230 (241)
Q Consensus 176 ~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~---~~~~~~l~~~Gf~~~~~~~~~~ 230 (241)
=- +. .-..++++.+. +|++.++++--.. +++..+. .||++.++..+.+
T Consensus 287 PP-R~-G~~~~~l~~l~---~~~~ivYvsC~p~tlaRDl~~L~--~~Y~l~~v~~~Dm 337 (353)
T TIGR02143 287 PP-RA-GLDPDTCKLVQ---AYERILYISCNPETLKANLEQLS--ETHRVERFALFDQ 337 (353)
T ss_pred CC-CC-CCcHHHHHHHH---cCCcEEEEEcCHHHHHHHHHHHh--cCcEEEEEEEccc
Confidence 21 11 11134444443 4777777654333 5665544 3499888887754
No 201
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=97.91 E-value=9.4e-05 Score=62.11 Aligned_cols=117 Identities=12% Similarity=0.093 Sum_probs=73.5
Q ss_pred HHHHHHHhhcC-CCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChH
Q psy1420 30 LWKDIFIDRLG-PTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNP 108 (241)
Q Consensus 30 ~~~~~~~~~l~-~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~ 108 (241)
..++.+...+. .-++.++||++||+|..+ ..++. . ....++++|.++.
T Consensus 35 ~vrea~f~~l~~~~~g~~vLDLfaGsG~lg-------------lea~s--------r----------ga~~v~~vE~~~~ 83 (189)
T TIGR00095 35 VVRELFFNILRPEIQGAHLLDVFAGSGLLG-------------EEALS--------R----------GAKVAFLEEDDRK 83 (189)
T ss_pred HHHHHHHHHHHHhcCCCEEEEecCCCcHHH-------------HHHHh--------C----------CCCEEEEEeCCHH
Confidence 34444444442 235779999999999988 43333 1 2347999999999
Q ss_pred hHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCC-C-C--CCCceeEEeeeehhhccccH
Q psy1420 109 RLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL-P-I--ESDSYSAYTIAFGIRNVTRI 184 (241)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~-~--~~~~~D~V~~~~~l~~~~~~ 184 (241)
+++.++++++ ..++. .++++++.|+... . . ....+|+|+..--... ...
T Consensus 84 a~~~~~~N~~-------------------------~~~~~-~~~~~~~~D~~~~l~~~~~~~~~~dvv~~DPPy~~-~~~ 136 (189)
T TIGR00095 84 ANQTLKENLA-------------------------LLKSG-EQAEVVRNSALRALKFLAKKPTFDNVIYLDPPFFN-GAL 136 (189)
T ss_pred HHHHHHHHHH-------------------------HhCCc-ccEEEEehhHHHHHHHhhccCCCceEEEECcCCCC-CcH
Confidence 9999999988 44543 3678888887432 1 1 1224788876432221 223
Q ss_pred HHHHHHHH--HhccCCcEEEEE
Q psy1420 185 DKALSEAY--RVLKPGGRFLCL 204 (241)
Q Consensus 185 ~~~l~~~~--~~LkpgG~l~i~ 204 (241)
.+.+..+. .+|+++|.+++-
T Consensus 137 ~~~l~~l~~~~~l~~~~iiv~E 158 (189)
T TIGR00095 137 QALLELCENNWILEDTVLIVVE 158 (189)
T ss_pred HHHHHHHHHCCCCCCCeEEEEE
Confidence 44454443 368888877653
No 202
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=97.90 E-value=7.7e-05 Score=68.22 Aligned_cols=148 Identities=14% Similarity=0.141 Sum_probs=100.6
Q ss_pred CCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCC
Q psy1420 43 HDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPI 122 (241)
Q Consensus 43 ~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~ 122 (241)
...++|-+|.|.|.-. ++++. .| ...+++.+|.+|.|++.+++...
T Consensus 289 ~a~~vLvlGGGDGLAl-------------Rellk--------yP---------~~~qI~lVdLDP~miela~~~~v---- 334 (508)
T COG4262 289 GARSVLVLGGGDGLAL-------------RELLK--------YP---------QVEQITLVDLDPRMIELASHATV---- 334 (508)
T ss_pred ccceEEEEcCCchHHH-------------HHHHh--------CC---------CcceEEEEecCHHHHHHhhhhhH----
Confidence 3457999999999877 55554 22 25689999999999999985432
Q ss_pred ccccccccceecceeeeeeccccCCCCCCeeEEecccCCC-CCCCCceeEEeeeehhhcccc-----HHHHHHHHHHhcc
Q psy1420 123 ESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL-PIESDSYSAYTIAFGIRNVTR-----IDKALSEAYRVLK 196 (241)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~D~V~~~~~l~~~~~-----~~~~l~~~~~~Lk 196 (241)
++......+.+++++++..|+.+- ....+.||.|+....=-+-+. ...+-..+.+.|+
T Consensus 335 ----------------lr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~ 398 (508)
T COG4262 335 ----------------LRALNQGSFSDPRVTVVNDDAFQWLRTAADMFDVVIVDLPDPSTPSIGRLYSVEFYRLLSRHLA 398 (508)
T ss_pred ----------------hhhhccCCccCCeeEEEeccHHHHHHhhcccccEEEEeCCCCCCcchhhhhhHHHHHHHHHhcC
Confidence 111112233446889988887653 344668999986331111111 1467778889999
Q ss_pred CCcEEEEEecCH-------HHHHHHHHHCCCceEEEEEe--cCceeEEEeeec
Q psy1420 197 PGGRFLCLEFSH-------EEFKSMIESAGFQYVTYENL--TFGVVAIHSGFK 240 (241)
Q Consensus 197 pgG~l~i~~~~~-------~~~~~~l~~~Gf~~~~~~~~--~~~~~~~~~~~~ 240 (241)
++|.+++..-++ -.+..-++++||+..-+... +||--++..+.+
T Consensus 399 e~Gl~VvQags~y~tp~vfw~i~aTik~AG~~~~Pyhv~VPTFGeWGf~l~~~ 451 (508)
T COG4262 399 ETGLMVVQAGSPYFTPRVFWRIDATIKSAGYRVWPYHVHVPTFGEWGFILAAP 451 (508)
T ss_pred cCceEEEecCCCccCCceeeeehhHHHhCcceeeeeEEecCcccccceeeccc
Confidence 999998865444 45677889999988776655 678777766543
No 203
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=97.88 E-value=0.00013 Score=65.03 Aligned_cols=110 Identities=14% Similarity=0.155 Sum_probs=77.7
Q ss_pred CCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcC
Q psy1420 41 PTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEEL 120 (241)
Q Consensus 41 ~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~ 120 (241)
+++ .+||.+|.|.|.++ +.++. + ....+++.+|+++..++.+++.....
T Consensus 75 ~~p-k~VLiiGgGdG~tl-------------Revlk----h-------------~~ve~i~~VEID~~Vi~~ar~~l~~~ 123 (282)
T COG0421 75 PNP-KRVLIIGGGDGGTL-------------REVLK----H-------------LPVERITMVEIDPAVIELARKYLPEP 123 (282)
T ss_pred CCC-CeEEEECCCccHHH-------------HHHHh----c-------------CCcceEEEEEcCHHHHHHHHHhccCc
Confidence 344 59999999999998 55554 1 13568999999999999999876621
Q ss_pred CCccccccccceecceeeeeeccccCCCCCCeeEEecccCCC-CCCCCceeEEeeeehhhccc----cHHHHHHHHHHhc
Q psy1420 121 PIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL-PIESDSYSAYTIAFGIRNVT----RIDKALSEAYRVL 195 (241)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~D~V~~~~~l~~~~----~~~~~l~~~~~~L 195 (241)
. .+...++++++..|.... .-.+.+||+|++-..=..-+ --..+++.+++.|
T Consensus 124 ~-----------------------~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~D~tdp~gp~~~Lft~eFy~~~~~~L 180 (282)
T COG0421 124 S-----------------------GGADDPRVEIIIDDGVEFLRDCEEKFDVIIVDSTDPVGPAEALFTEEFYEGCRRAL 180 (282)
T ss_pred c-----------------------cccCCCceEEEeccHHHHHHhCCCcCCEEEEcCCCCCCcccccCCHHHHHHHHHhc
Confidence 1 011126889999996654 22234899999643222111 1268999999999
Q ss_pred cCCcEEEEE
Q psy1420 196 KPGGRFLCL 204 (241)
Q Consensus 196 kpgG~l~i~ 204 (241)
+|+|.++..
T Consensus 181 ~~~Gi~v~q 189 (282)
T COG0421 181 KEDGIFVAQ 189 (282)
T ss_pred CCCcEEEEe
Confidence 999999886
No 204
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=97.87 E-value=0.00029 Score=63.89 Aligned_cols=120 Identities=13% Similarity=0.064 Sum_probs=76.2
Q ss_pred HHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHH
Q psy1420 32 KDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLR 111 (241)
Q Consensus 32 ~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~ 111 (241)
...+...+. ++..++|+|||.|.-+ ..++.. +... .....++++|+|..+++
T Consensus 67 ~~~Ia~~i~--~~~~lIELGsG~~~Kt-------------~~LL~a----L~~~---------~~~~~Y~plDIS~~~L~ 118 (319)
T TIGR03439 67 SSDIAASIP--SGSMLVELGSGNLRKV-------------GILLEA----LERQ---------KKSVDYYALDVSRSELQ 118 (319)
T ss_pred HHHHHHhcC--CCCEEEEECCCchHHH-------------HHHHHH----HHhc---------CCCceEEEEECCHHHHH
Confidence 344544443 5668999999999877 444442 2111 02467999999999999
Q ss_pred HHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCC----CC--CCCceeEEee-eehhhccccH
Q psy1420 112 FLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL----PI--ESDSYSAYTI-AFGIRNVTRI 184 (241)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~----~~--~~~~~D~V~~-~~~l~~~~~~ 184 (241)
.+.+.+. ....+.=.+.-+++|.... +- ......+++. ..++.|++..
T Consensus 119 ~a~~~L~-------------------------~~~~p~l~v~~l~gdy~~~l~~l~~~~~~~~~r~~~flGSsiGNf~~~ 173 (319)
T TIGR03439 119 RTLAELP-------------------------LGNFSHVRCAGLLGTYDDGLAWLKRPENRSRPTTILWLGSSIGNFSRP 173 (319)
T ss_pred HHHHhhh-------------------------hccCCCeEEEEEEecHHHHHhhcccccccCCccEEEEeCccccCCCHH
Confidence 8887765 1222211233366665432 21 1223455554 4588888765
Q ss_pred --HHHHHHHHH-hccCCcEEEEE
Q psy1420 185 --DKALSEAYR-VLKPGGRFLCL 204 (241)
Q Consensus 185 --~~~l~~~~~-~LkpgG~l~i~ 204 (241)
..+|+.+++ .|+|||.|++.
T Consensus 174 ea~~fL~~~~~~~l~~~d~lLiG 196 (319)
T TIGR03439 174 EAAAFLAGFLATALSPSDSFLIG 196 (319)
T ss_pred HHHHHHHHHHHhhCCCCCEEEEe
Confidence 488999999 99999998873
No 205
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=97.86 E-value=5.2e-05 Score=70.40 Aligned_cols=101 Identities=16% Similarity=0.133 Sum_probs=72.9
Q ss_pred CCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCC
Q psy1420 43 HDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPI 122 (241)
Q Consensus 43 ~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~ 122 (241)
++.+|||++||+|..+ ..++. . ....+++++|+++.+++.+++++.
T Consensus 57 ~~~~vLDl~aGsG~~~-------------l~~a~----~-------------~~~~~V~a~Din~~Av~~a~~N~~---- 102 (382)
T PRK04338 57 PRESVLDALSASGIRG-------------IRYAL----E-------------TGVEKVTLNDINPDAVELIKKNLE---- 102 (382)
T ss_pred CCCEEEECCCcccHHH-------------HHHHH----H-------------CCCCEEEEEeCCHHHHHHHHHHHH----
Confidence 3468999999999988 44432 0 123479999999999999999987
Q ss_pred ccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHHHHHHhccCCcEEE
Q psy1420 123 ESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFL 202 (241)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~ 202 (241)
..++. ++.+.+.|+...-...++||+|++.- ...+..++..+.+.+++||.++
T Consensus 103 ---------------------~N~~~--~~~v~~~Da~~~l~~~~~fD~V~lDP----~Gs~~~~l~~al~~~~~~gily 155 (382)
T PRK04338 103 ---------------------LNGLE--NEKVFNKDANALLHEERKFDVVDIDP----FGSPAPFLDSAIRSVKRGGLLC 155 (382)
T ss_pred ---------------------HhCCC--ceEEEhhhHHHHHhhcCCCCEEEECC----CCCcHHHHHHHHHHhcCCCEEE
Confidence 44444 45678888765321135699998642 1345678888778889999999
Q ss_pred EE
Q psy1420 203 CL 204 (241)
Q Consensus 203 i~ 204 (241)
++
T Consensus 156 vS 157 (382)
T PRK04338 156 VT 157 (382)
T ss_pred EE
Confidence 86
No 206
>KOG1269|consensus
Probab=97.82 E-value=3e-05 Score=71.44 Aligned_cols=109 Identities=22% Similarity=0.287 Sum_probs=87.0
Q ss_pred CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCC
Q psy1420 42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP 121 (241)
Q Consensus 42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~ 121 (241)
.++..++|+|||-|... ..+.. -....++++|.++.....+.....
T Consensus 109 ~~~~~~~~~~~g~~~~~-------------~~i~~------------------f~~~~~~Gl~~n~~e~~~~~~~~~--- 154 (364)
T KOG1269|consen 109 FPGSKVLDVGTGVGGPS-------------RYIAV------------------FKKAGVVGLDNNAYEAFRANELAK--- 154 (364)
T ss_pred cccccccccCcCcCchh-------------HHHHH------------------hccCCccCCCcCHHHHHHHHHHHH---
Confidence 56668999999999887 11111 135789999999988887776655
Q ss_pred CccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHHHHHHhccCCcEE
Q psy1420 122 IESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRF 201 (241)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l 201 (241)
+..+. ....+...++...|+++..||.+-+..+..+.++...++++++|++||||++
T Consensus 155 ----------------------~~~l~-~k~~~~~~~~~~~~fedn~fd~v~~ld~~~~~~~~~~~y~Ei~rv~kpGG~~ 211 (364)
T KOG1269|consen 155 ----------------------KAYLD-NKCNFVVADFGKMPFEDNTFDGVRFLEVVCHAPDLEKVYAEIYRVLKPGGLF 211 (364)
T ss_pred ----------------------HHHhh-hhcceehhhhhcCCCCccccCcEEEEeecccCCcHHHHHHHHhcccCCCceE
Confidence 44444 3344578888899999999999999999999999999999999999999999
Q ss_pred EEEecC
Q psy1420 202 LCLEFS 207 (241)
Q Consensus 202 ~i~~~~ 207 (241)
++.++.
T Consensus 212 i~~e~i 217 (364)
T KOG1269|consen 212 IVKEWI 217 (364)
T ss_pred EeHHHH
Confidence 985543
No 207
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=97.82 E-value=6.6e-05 Score=63.75 Aligned_cols=100 Identities=16% Similarity=0.265 Sum_probs=68.4
Q ss_pred CCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcC
Q psy1420 41 PTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEEL 120 (241)
Q Consensus 41 ~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~ 120 (241)
..++.+|+|.-||-|.++ ..++. . .....++++|++|.+.+.+.+++.
T Consensus 99 v~~~e~VlD~faGIG~f~-------------l~~ak----~-------------~~~~~V~A~d~Np~a~~~L~~Ni~-- 146 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGPFS-------------LPIAK----H-------------GKAKRVYAVDLNPDAVEYLKENIR-- 146 (200)
T ss_dssp --TT-EEEETT-TTTTTH-------------HHHHH----H-------------T-SSEEEEEES-HHHHHHHHHHHH--
T ss_pred CCcceEEEEccCCccHHH-------------HHHhh----h-------------cCccEEEEecCCHHHHHHHHHHHH--
Confidence 457889999999999999 33322 0 135679999999999999999998
Q ss_pred CCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHHHHHHhccCCcE
Q psy1420 121 PIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGR 200 (241)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~ 200 (241)
..++. .++..+++|...... ...+|.|+++..- ....+|..+.+++++||.
T Consensus 147 -----------------------lNkv~-~~i~~~~~D~~~~~~-~~~~drvim~lp~----~~~~fl~~~~~~~~~~g~ 197 (200)
T PF02475_consen 147 -----------------------LNKVE-NRIEVINGDAREFLP-EGKFDRVIMNLPE----SSLEFLDAALSLLKEGGI 197 (200)
T ss_dssp -----------------------HTT-T-TTEEEEES-GGG----TT-EEEEEE--TS----SGGGGHHHHHHHEEEEEE
T ss_pred -----------------------HcCCC-CeEEEEcCCHHHhcC-ccccCEEEECChH----HHHHHHHHHHHHhcCCcE
Confidence 66666 678899999988754 6789999875422 233578888899999987
Q ss_pred E
Q psy1420 201 F 201 (241)
Q Consensus 201 l 201 (241)
+
T Consensus 198 i 198 (200)
T PF02475_consen 198 I 198 (200)
T ss_dssp E
T ss_pred E
Confidence 6
No 208
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=97.81 E-value=0.00028 Score=52.67 Aligned_cols=83 Identities=30% Similarity=0.441 Sum_probs=56.7
Q ss_pred CCceeecCChHhHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCC--CCCCC-CceeEEee
Q psy1420 98 QFPNQIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEE--LPIES-DSYSAYTI 174 (241)
Q Consensus 98 ~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~--~~~~~-~~~D~V~~ 174 (241)
..++++|+++.++........ .... ..+.+...+... .++.. ..+|++ +
T Consensus 73 ~~~~~~d~~~~~~~~~~~~~~-------------------------~~~~--~~~~~~~~~~~~~~~~~~~~~~~d~~-~ 124 (257)
T COG0500 73 AYVVGVDLSPEMLALARARAE-------------------------GAGL--GLVDFVVADALGGVLPFEDSASFDLV-I 124 (257)
T ss_pred ceEEEEeCCHHHHHHHHhhhh-------------------------hcCC--CceEEEEeccccCCCCCCCCCceeEE-e
Confidence 367789999999988444432 1000 014666777665 56655 489999 5
Q ss_pred eehhhccccHHHHHHHHHHhccCCcEEEEEecCH
Q psy1420 175 AFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH 208 (241)
Q Consensus 175 ~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 208 (241)
.....+..++...+.++.+.++|+|.+++.....
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~ 158 (257)
T COG0500 125 SLLVLHLLPPAKALRELLRVLKPGGRLVLSDLLR 158 (257)
T ss_pred eeeehhcCCHHHHHHHHHHhcCCCcEEEEEeccC
Confidence 5544443338899999999999999998876554
No 209
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=97.80 E-value=0.00039 Score=59.28 Aligned_cols=124 Identities=16% Similarity=0.150 Sum_probs=82.6
Q ss_pred EEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCCcccc
Q psy1420 47 LLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIESDS 126 (241)
Q Consensus 47 vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~ 126 (241)
|+|+||..|+.. ..++. .. ...+++++|+++.-++.|++++.
T Consensus 1 vaDIGtDHgyLp-------------i~L~~-------~~----------~~~~~ia~DI~~gpL~~A~~~i~-------- 42 (205)
T PF04816_consen 1 VADIGTDHGYLP-------------IYLLK-------NG----------KAPKAIAVDINPGPLEKAKENIA-------- 42 (205)
T ss_dssp EEEET-STTHHH-------------HHHHH-------TT----------SEEEEEEEESSHHHHHHHHHHHH--------
T ss_pred CceeccchhHHH-------------HHHHh-------cC----------CCCEEEEEeCCHHHHHHHHHHHH--------
Confidence 689999999987 43333 11 34579999999999999999998
Q ss_pred ccccceecceeeeeeccccCCCCCCeeEEecccCC-CCCCCCceeEEeeeehhhccccHHHHHHHHHHhccCCcEEEEEe
Q psy1420 127 YSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEE-LPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 205 (241)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 205 (241)
+.++. .+++++.+|-.+ ++. .+..|.|+.+..=. .-+.+.|+.....++....|++.-
T Consensus 43 -----------------~~~l~-~~i~~rlgdGL~~l~~-~e~~d~ivIAGMGG--~lI~~ILe~~~~~~~~~~~lILqP 101 (205)
T PF04816_consen 43 -----------------KYGLE-DRIEVRLGDGLEVLKP-GEDVDTIVIAGMGG--ELIIEILEAGPEKLSSAKRLILQP 101 (205)
T ss_dssp -----------------HTT-T-TTEEEEE-SGGGG--G-GG---EEEEEEE-H--HHHHHHHHHTGGGGTT--EEEEEE
T ss_pred -----------------HcCCc-ccEEEEECCcccccCC-CCCCCEEEEecCCH--HHHHHHHHhhHHHhccCCeEEEeC
Confidence 77766 689999999544 332 22368877654221 234567777777776666777765
Q ss_pred cCH-HHHHHHHHHCCCceEEEEEec
Q psy1420 206 FSH-EEFKSMIESAGFQYVTYENLT 229 (241)
Q Consensus 206 ~~~-~~~~~~l~~~Gf~~~~~~~~~ 229 (241)
.+. ..++.+|.+.||.+.+..-+.
T Consensus 102 ~~~~~~LR~~L~~~gf~I~~E~lv~ 126 (205)
T PF04816_consen 102 NTHAYELRRWLYENGFEIIDEDLVE 126 (205)
T ss_dssp SS-HHHHHHHHHHTTEEEEEEEEEE
T ss_pred CCChHHHHHHHHHCCCEEEEeEEEe
Confidence 555 899999999999998877664
No 210
>PLN02823 spermine synthase
Probab=97.78 E-value=9.7e-05 Score=67.49 Aligned_cols=109 Identities=14% Similarity=0.137 Sum_probs=73.4
Q ss_pred CCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCC
Q psy1420 43 HDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPI 122 (241)
Q Consensus 43 ~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~ 122 (241)
...+||.+|+|.|..+ +.++. . ....+++.+|+++.+++.+++.....
T Consensus 103 ~pk~VLiiGgG~G~~~-------------re~l~--------~---------~~~~~v~~VEiD~~vv~lar~~~~~~-- 150 (336)
T PLN02823 103 NPKTVFIMGGGEGSTA-------------REVLR--------H---------KTVEKVVMCDIDQEVVDFCRKHLTVN-- 150 (336)
T ss_pred CCCEEEEECCCchHHH-------------HHHHh--------C---------CCCCeEEEEECCHHHHHHHHHhcccc--
Confidence 3458999999999877 43333 0 12457999999999999998775400
Q ss_pred ccccccccceecceeeeeeccccCCCCCCeeEEecccCCC-CCCCCceeEEeeeehhhc--ccc----HHHHHH-HHHHh
Q psy1420 123 ESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL-PIESDSYSAYTIAFGIRN--VTR----IDKALS-EAYRV 194 (241)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~D~V~~~~~l~~--~~~----~~~~l~-~~~~~ 194 (241)
...+.+++++++..|+... ....++||+|++-..=.. .+. -..+++ .+.+.
T Consensus 151 ---------------------~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~D~~dp~~~~~~~~Lyt~eF~~~~~~~~ 209 (336)
T PLN02823 151 ---------------------REAFCDKRLELIINDARAELEKRDEKFDVIIGDLADPVEGGPCYQLYTKSFYERIVKPK 209 (336)
T ss_pred ---------------------cccccCCceEEEEChhHHHHhhCCCCccEEEecCCCccccCcchhhccHHHHHHHHHHh
Confidence 1112336889999886653 333568999997531100 000 135777 88999
Q ss_pred ccCCcEEEEE
Q psy1420 195 LKPGGRFLCL 204 (241)
Q Consensus 195 LkpgG~l~i~ 204 (241)
|+|||.+++.
T Consensus 210 L~p~Gvlv~q 219 (336)
T PLN02823 210 LNPGGIFVTQ 219 (336)
T ss_pred cCCCcEEEEe
Confidence 9999998764
No 211
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=97.78 E-value=0.00058 Score=62.85 Aligned_cols=136 Identities=18% Similarity=0.280 Sum_probs=93.7
Q ss_pred HHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHH
Q psy1420 35 FIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLE 114 (241)
Q Consensus 35 ~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~ 114 (241)
....+++.+|.+|||..+++|.=+ .+++..|. . ....+++.|.++..++...
T Consensus 148 ~a~~L~p~pge~VlD~cAAPGGKT-------------thla~~~~----~-----------~~~iV~A~D~~~~Rl~~l~ 199 (355)
T COG0144 148 PALVLDPKPGERVLDLCAAPGGKT-------------THLAELME----N-----------EGAIVVAVDVSPKRLKRLR 199 (355)
T ss_pred HHHHcCCCCcCEEEEECCCCCCHH-------------HHHHHhcC----C-----------CCceEEEEcCCHHHHHHHH
Confidence 345678899999999999999887 45544211 1 1344699999999999999
Q ss_pred HHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCC---CCCCceeEEeee------ehhhcccc--
Q psy1420 115 ANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELP---IESDSYSAYTIA------FGIRNVTR-- 183 (241)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~~D~V~~~------~~l~~~~~-- 183 (241)
.++. +.|+. ++.....|....+ ...++||.|+.- .+++.-++
T Consensus 200 ~nl~-------------------------RlG~~--nv~~~~~d~~~~~~~~~~~~~fD~iLlDaPCSg~G~irr~Pd~~ 252 (355)
T COG0144 200 ENLK-------------------------RLGVR--NVIVVNKDARRLAELLPGGEKFDRILLDAPCSGTGVIRRDPDVK 252 (355)
T ss_pred HHHH-------------------------HcCCC--ceEEEecccccccccccccCcCcEEEECCCCCCCcccccCcccc
Confidence 9999 66766 4677777766543 112359999842 23321111
Q ss_pred --------------HHHHHHHHHHhccCCcEEEEEecCH------HHHHHHHHHC-CCceEEE
Q psy1420 184 --------------IDKALSEAYRVLKPGGRFLCLEFSH------EEFKSMIESA-GFQYVTY 225 (241)
Q Consensus 184 --------------~~~~l~~~~~~LkpgG~l~i~~~~~------~~~~~~l~~~-Gf~~~~~ 225 (241)
-.++|..+.+.|||||+|+-++-+. +.+...+++. +|..+..
T Consensus 253 ~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~eENE~vV~~~L~~~~~~~~~~~ 315 (355)
T COG0144 253 WRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTPEENEEVVERFLERHPDFELEPV 315 (355)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCchhcCHHHHHHHHHhCCCceeecc
Confidence 1478899999999999999877555 4555666665 5655543
No 212
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=97.77 E-value=0.00013 Score=63.70 Aligned_cols=130 Identities=14% Similarity=0.166 Sum_probs=83.6
Q ss_pred CCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCC
Q psy1420 43 HDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPI 122 (241)
Q Consensus 43 ~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~ 122 (241)
...+||-+|.|.|..+ ..++. . ....+++.+|+++..++.+++.....
T Consensus 76 ~p~~VLiiGgG~G~~~-------------~ell~--------~---------~~~~~i~~VEiD~~Vv~~a~~~f~~~-- 123 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTA-------------RELLK--------H---------PPVESITVVEIDPEVVELARKYFPEF-- 123 (246)
T ss_dssp ST-EEEEEESTTSHHH-------------HHHTT--------S---------TT-SEEEEEES-HHHHHHHHHHTHHH--
T ss_pred CcCceEEEcCCChhhh-------------hhhhh--------c---------CCcceEEEEecChHHHHHHHHhchhh--
Confidence 4569999999999888 44443 1 12468999999999999998865511
Q ss_pred ccccccccceecceeeeeeccccCCCCCCeeEEecccCCC-CCCCC-ceeEEeeeehhhcccc----HHHHHHHHHHhcc
Q psy1420 123 ESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL-PIESD-SYSAYTIAFGIRNVTR----IDKALSEAYRVLK 196 (241)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~-~~D~V~~~~~l~~~~~----~~~~l~~~~~~Lk 196 (241)
.....+++++++..|.... .-..+ +||+|+.-..-...+. -..+++.+.+.|+
T Consensus 124 ---------------------~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~ 182 (246)
T PF01564_consen 124 ---------------------SEGLDDPRVRIIIGDGRKFLKETQEEKYDVIIVDLTDPDGPAPNLFTREFYQLCKRRLK 182 (246)
T ss_dssp ---------------------HTTGGSTTEEEEESTHHHHHHTSSST-EEEEEEESSSTTSCGGGGSSHHHHHHHHHHEE
T ss_pred ---------------------ccccCCCceEEEEhhhHHHHHhccCCcccEEEEeCCCCCCCcccccCHHHHHHHHhhcC
Confidence 1112336899999997543 11233 8999996433211111 2589999999999
Q ss_pred CCcEEEEEecCH-------HHHHHHHHHCCCceEEEE
Q psy1420 197 PGGRFLCLEFSH-------EEFKSMIESAGFQYVTYE 226 (241)
Q Consensus 197 pgG~l~i~~~~~-------~~~~~~l~~~Gf~~~~~~ 226 (241)
|||.+++...+. ..+.+.+++... .+...
T Consensus 183 ~~Gv~v~~~~~~~~~~~~~~~i~~tl~~~F~-~v~~~ 218 (246)
T PF01564_consen 183 PDGVLVLQAGSPFLHPELFKSILKTLRSVFP-QVKPY 218 (246)
T ss_dssp EEEEEEEEEEETTTTHHHHHHHHHHHHTTSS-EEEEE
T ss_pred CCcEEEEEccCcccchHHHHHHHHHHHHhCC-ceEEE
Confidence 999998864222 455566666655 44443
No 213
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=97.74 E-value=0.00044 Score=63.55 Aligned_cols=130 Identities=15% Similarity=0.265 Sum_probs=79.2
Q ss_pred HHHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHh
Q psy1420 30 LWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPR 109 (241)
Q Consensus 30 ~~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~ 109 (241)
.+.+.+.+.++..++ ++||+=||.|+++ ..++. ...+++|+|.++.+
T Consensus 184 ~l~~~~~~~l~~~~~-~vlDlycG~G~fs-------------l~la~-------------------~~~~V~gvE~~~~a 230 (352)
T PF05958_consen 184 KLYEQALEWLDLSKG-DVLDLYCGVGTFS-------------LPLAK-------------------KAKKVIGVEIVEEA 230 (352)
T ss_dssp HHHHHHHHHCTT-TT-EEEEES-TTTCCH-------------HHHHC-------------------CSSEEEEEES-HHH
T ss_pred HHHHHHHHHhhcCCC-cEEEEeecCCHHH-------------HHHHh-------------------hCCeEEEeeCCHHH
Confidence 345667777777666 8999999999999 44444 46789999999999
Q ss_pred HHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCC----------------CCCCceeEEe
Q psy1420 110 LRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELP----------------IESDSYSAYT 173 (241)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~----------------~~~~~~D~V~ 173 (241)
++.|+.++. ..++. ++++..+++++.. .....+|+|+
T Consensus 231 v~~A~~Na~-------------------------~N~i~--n~~f~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~d~vi 283 (352)
T PF05958_consen 231 VEDARENAK-------------------------LNGID--NVEFIRGDAEDFAKALAKAREFNRLKGIDLKSFKFDAVI 283 (352)
T ss_dssp HHHHHHHHH-------------------------HTT----SEEEEE--SHHCCCHHCCS-GGTTGGGS-GGCTTESEEE
T ss_pred HHHHHHHHH-------------------------HcCCC--cceEEEeeccchhHHHHhhHHHHhhhhhhhhhcCCCEEE
Confidence 999999998 55655 6778776654331 1123578886
Q ss_pred ee---ehhhccccHHHHHHHHHHhccCCcEEEEEecCH----HHHHHHHHHCCCceEEEEEecC
Q psy1420 174 IA---FGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH----EEFKSMIESAGFQYVTYENLTF 230 (241)
Q Consensus 174 ~~---~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~----~~~~~~l~~~Gf~~~~~~~~~~ 230 (241)
.- .++. ..+++.+. ++. +++-++-.+ +++..+ . .||++.++..+.+
T Consensus 284 lDPPR~G~~-----~~~~~~~~---~~~-~ivYvSCnP~tlaRDl~~L-~-~~y~~~~v~~~Dm 336 (352)
T PF05958_consen 284 LDPPRAGLD-----EKVIELIK---KLK-RIVYVSCNPATLARDLKIL-K-EGYKLEKVQPVDM 336 (352)
T ss_dssp E---TT-SC-----HHHHHHHH---HSS-EEEEEES-HHHHHHHHHHH-H-CCEEEEEEEEE-S
T ss_pred EcCCCCCch-----HHHHHHHh---cCC-eEEEEECCHHHHHHHHHHH-h-hcCEEEEEEEeec
Confidence 41 1111 24444443 334 444444444 666554 3 4999988887743
No 214
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.72 E-value=0.00055 Score=58.23 Aligned_cols=119 Identities=22% Similarity=0.296 Sum_probs=78.3
Q ss_pred CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCC
Q psy1420 42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP 121 (241)
Q Consensus 42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~ 121 (241)
+++.+|+|+|+.+|.|+ ||+.+.+. ....++++|+.|.
T Consensus 44 ~~~~~ViDLGAAPGgWs----------Qva~~~~~-------------------~~~~ivavDi~p~------------- 81 (205)
T COG0293 44 KPGMVVVDLGAAPGGWS----------QVAAKKLG-------------------AGGKIVAVDILPM------------- 81 (205)
T ss_pred cCCCEEEEcCCCCCcHH----------HHHHHHhC-------------------CCCcEEEEECccc-------------
Confidence 67899999999999999 33343333 3455999998543
Q ss_pred CccccccccceecceeeeeeccccCCCCCCeeEEecccCCCC--------CCCCceeEEeeeeh-----hhcccc-----
Q psy1420 122 IESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELP--------IESDSYSAYTIAFG-----IRNVTR----- 183 (241)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--------~~~~~~D~V~~~~~-----l~~~~~----- 183 (241)
++ + +++.++++|+...+ ....++|+|++-.. .+...+
T Consensus 82 ----------------------~~-~--~~V~~iq~d~~~~~~~~~l~~~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~ 136 (205)
T COG0293 82 ----------------------KP-I--PGVIFLQGDITDEDTLEKLLEALGGAPVDVVLSDMAPNTSGNRSVDHARSMY 136 (205)
T ss_pred ----------------------cc-C--CCceEEeeeccCccHHHHHHHHcCCCCcceEEecCCCCcCCCccccHHHHHH
Confidence 11 1 35788888887754 23445799986432 222222
Q ss_pred -HHHHHHHHHHhccCCcEEEEEecCHHHHHHHHHHC--CCceEEEEE
Q psy1420 184 -IDKALSEAYRVLKPGGRFLCLEFSHEEFKSMIESA--GFQYVTYEN 227 (241)
Q Consensus 184 -~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~l~~~--Gf~~~~~~~ 227 (241)
-..++.-+..+|+|||.+++-.|..++..+.+... .|+.++...
T Consensus 137 L~~~a~~~a~~vL~~~G~fv~K~fqg~~~~~~l~~~~~~F~~v~~~K 183 (205)
T COG0293 137 LCELALEFALEVLKPGGSFVAKVFQGEDFEDLLKALRRLFRKVKIFK 183 (205)
T ss_pred HHHHHHHHHHHeeCCCCeEEEEEEeCCCHHHHHHHHHHhhceeEEec
Confidence 24677778889999999999888875555554432 366665543
No 215
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=97.70 E-value=0.00075 Score=61.65 Aligned_cols=118 Identities=21% Similarity=0.302 Sum_probs=90.2
Q ss_pred CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCC
Q psy1420 42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP 121 (241)
Q Consensus 42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~ 121 (241)
.+|.+|+|.=+|-|.++ ..++. .....++++|++|.+.+.+++++.
T Consensus 187 ~~GE~V~DmFAGVGpfs-------------i~~Ak------------------~g~~~V~A~diNP~A~~~L~eNi~--- 232 (341)
T COG2520 187 KEGETVLDMFAGVGPFS-------------IPIAK------------------KGRPKVYAIDINPDAVEYLKENIR--- 232 (341)
T ss_pred cCCCEEEEccCCcccch-------------hhhhh------------------cCCceEEEEecCHHHHHHHHHHHH---
Confidence 34889999999999999 33333 123349999999999999999998
Q ss_pred CccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHHHHHHhccCCcEE
Q psy1420 122 IESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRF 201 (241)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l 201 (241)
.+++. +.+..+++|..........+|.|+++. ..+-.+++..+.+.+++||.+
T Consensus 233 ----------------------LN~v~-~~v~~i~gD~rev~~~~~~aDrIim~~----p~~a~~fl~~A~~~~k~~g~i 285 (341)
T COG2520 233 ----------------------LNKVE-GRVEPILGDAREVAPELGVADRIIMGL----PKSAHEFLPLALELLKDGGII 285 (341)
T ss_pred ----------------------hcCcc-ceeeEEeccHHHhhhccccCCEEEeCC----CCcchhhHHHHHHHhhcCcEE
Confidence 66666 568899999998865547899999744 334467788888889999999
Q ss_pred EEEecCH---------HHHHHHHHHCCC
Q psy1420 202 LCLEFSH---------EEFKSMIESAGF 220 (241)
Q Consensus 202 ~i~~~~~---------~~~~~~l~~~Gf 220 (241)
-+.++.+ ..++....+.|+
T Consensus 286 Hyy~~~~e~~~~~~~~~~i~~~~~~~~~ 313 (341)
T COG2520 286 HYYEFVPEDDIEERPEKRIKSAARKGGY 313 (341)
T ss_pred EEEeccchhhcccchHHHHHHHHhhccC
Confidence 8877666 455566666664
No 216
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.69 E-value=0.00051 Score=64.79 Aligned_cols=140 Identities=13% Similarity=0.140 Sum_probs=97.5
Q ss_pred HHHHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChH
Q psy1420 29 RLWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNP 108 (241)
Q Consensus 29 ~~~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~ 108 (241)
..+.+...+++...++.+++|+=||.|+++ ..+++ ...+++|+|+++.
T Consensus 279 ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~-------------l~lA~-------------------~~~~V~gvEi~~~ 326 (432)
T COG2265 279 EKLYETALEWLELAGGERVLDLYCGVGTFG-------------LPLAK-------------------RVKKVHGVEISPE 326 (432)
T ss_pred HHHHHHHHHHHhhcCCCEEEEeccCCChhh-------------hhhcc-------------------cCCEEEEEecCHH
Confidence 345677777778788889999999999999 44444 5789999999999
Q ss_pred hHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCC---CCceeEEeeeehhhccccHH
Q psy1420 109 RLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIE---SDSYSAYTIAFGIRNVTRID 185 (241)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~---~~~~D~V~~~~~l~~~~~~~ 185 (241)
+++.|++++. ..++. ++.+..++++..... ...+|.|+..--=.- -..
T Consensus 327 aV~~A~~NA~-------------------------~n~i~--N~~f~~~~ae~~~~~~~~~~~~d~VvvDPPR~G--~~~ 377 (432)
T COG2265 327 AVEAAQENAA-------------------------ANGID--NVEFIAGDAEEFTPAWWEGYKPDVVVVDPPRAG--ADR 377 (432)
T ss_pred HHHHHHHHHH-------------------------HcCCC--cEEEEeCCHHHHhhhccccCCCCEEEECCCCCC--CCH
Confidence 9999999999 66666 589999998876432 347899984100000 002
Q ss_pred HHHHHHHHhccCCcEEEEEecCH--HHHHHHHHHCCCceEEEEEecC
Q psy1420 186 KALSEAYRVLKPGGRFLCLEFSH--EEFKSMIESAGFQYVTYENLTF 230 (241)
Q Consensus 186 ~~l~~~~~~LkpgG~l~i~~~~~--~~~~~~l~~~Gf~~~~~~~~~~ 230 (241)
.+++.+. .++|..+++++--.. ..=...|.+.|+.+.++..+.+
T Consensus 378 ~~lk~l~-~~~p~~IvYVSCNP~TlaRDl~~L~~~gy~i~~v~~~Dm 423 (432)
T COG2265 378 EVLKQLA-KLKPKRIVYVSCNPATLARDLAILASTGYEIERVQPFDM 423 (432)
T ss_pred HHHHHHH-hcCCCcEEEEeCCHHHHHHHHHHHHhCCeEEEEEEEecc
Confidence 3444443 457888888754333 3334567888888777776643
No 217
>KOG1500|consensus
Probab=97.67 E-value=0.00018 Score=65.21 Aligned_cols=102 Identities=18% Similarity=0.303 Sum_probs=70.9
Q ss_pred CCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcC
Q psy1420 41 PTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEEL 120 (241)
Q Consensus 41 ~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~ 120 (241)
.-.+..|||+|||+|-++ . .+.+. ...++++++. ..|.+.|++.++
T Consensus 175 DF~~kiVlDVGaGSGILS-------------~---------FAaqA---------GA~~vYAvEA-S~MAqyA~~Lv~-- 220 (517)
T KOG1500|consen 175 DFQDKIVLDVGAGSGILS-------------F---------FAAQA---------GAKKVYAVEA-SEMAQYARKLVA-- 220 (517)
T ss_pred ccCCcEEEEecCCccHHH-------------H---------HHHHh---------CcceEEEEeh-hHHHHHHHHHHh--
Confidence 346778999999999887 1 11111 3567999985 578888888877
Q ss_pred CCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeee---ehhhccccHHHHHHHHHHhccC
Q psy1420 121 PIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIA---FGIRNVTRIDKALSEAYRVLKP 197 (241)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~---~~l~~~~~~~~~l~~~~~~Lkp 197 (241)
...+. +++.++.+.+++..++ ++.|++++- ..+.+ ++....--.+++.|||
T Consensus 221 -----------------------~N~~~-~rItVI~GKiEdieLP-Ek~DviISEPMG~mL~N-ERMLEsYl~Ark~l~P 274 (517)
T KOG1500|consen 221 -----------------------SNNLA-DRITVIPGKIEDIELP-EKVDVIISEPMGYMLVN-ERMLESYLHARKWLKP 274 (517)
T ss_pred -----------------------cCCcc-ceEEEccCccccccCc-hhccEEEeccchhhhhh-HHHHHHHHHHHhhcCC
Confidence 44444 7899999999998775 578999863 11211 2222333445699999
Q ss_pred CcEEE
Q psy1420 198 GGRFL 202 (241)
Q Consensus 198 gG~l~ 202 (241)
.|.++
T Consensus 275 ~GkMf 279 (517)
T KOG1500|consen 275 NGKMF 279 (517)
T ss_pred CCccc
Confidence 99987
No 218
>KOG2798|consensus
Probab=97.67 E-value=0.00081 Score=60.44 Aligned_cols=77 Identities=23% Similarity=0.410 Sum_probs=59.4
Q ss_pred eeEEecccCCCC---CCCCceeEEeeeehhhccccHHHHHHHHHHhccCCcEEEE-------------------EecCHH
Q psy1420 152 LRFLEANAEELP---IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLC-------------------LEFSHE 209 (241)
Q Consensus 152 ~~~~~~d~~~~~---~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i-------------------~~~~~~ 209 (241)
++...+|+.+.- ...+.||+|+.++.+....+.-..++.++++|||||+.+= ++++-+
T Consensus 240 fsicaGDF~evy~~s~~~~~~d~VvTcfFIDTa~NileYi~tI~~iLk~GGvWiNlGPLlYHF~d~~g~~~~~siEls~e 319 (369)
T KOG2798|consen 240 FSICAGDFLEVYGTSSGAGSYDVVVTCFFIDTAHNILEYIDTIYKILKPGGVWINLGPLLYHFEDTHGVENEMSIELSLE 319 (369)
T ss_pred ccccccceeEEecCcCCCCccceEEEEEEeechHHHHHHHHHHHHhccCCcEEEeccceeeeccCCCCCcccccccccHH
Confidence 444557766542 2235799999999998888899999999999999999762 122239
Q ss_pred HHHHHHHHCCCceEEEEEe
Q psy1420 210 EFKSMIESAGFQYVTYENL 228 (241)
Q Consensus 210 ~~~~~l~~~Gf~~~~~~~~ 228 (241)
++..++...||++++.+.+
T Consensus 320 dl~~v~~~~GF~~~ke~~I 338 (369)
T KOG2798|consen 320 DLKRVASHRGFEVEKERGI 338 (369)
T ss_pred HHHHHHHhcCcEEEEeeee
Confidence 9999999999999887744
No 219
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=97.67 E-value=7.8e-06 Score=70.95 Aligned_cols=90 Identities=24% Similarity=0.374 Sum_probs=15.8
Q ss_pred CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCC
Q psy1420 42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP 121 (241)
Q Consensus 42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~ 121 (241)
+||++++-+..+..... +++.+|..|+..++|.+|.++.++..+|+||++|.......-++...+.+.+.+.+.
T Consensus 144 kPGG~l~ile~~~p~~~---~~~~~~~~y~~~ilP~~g~l~~~~~~~Y~yL~~Si~~f~~~~~~~~~l~~~Gf~~v~--- 217 (233)
T PF01209_consen 144 KPGGRLVILEFSKPRNP---LLRALYKFYFKYILPLIGRLLSGDREAYRYLPESIRRFPSPEELKELLEEAGFKNVE--- 217 (233)
T ss_dssp EEEEEEEEEEEEB-SSH---HHHHHHHH----------------------------------------------------
T ss_pred CCCeEEEEeeccCCCCc---hhhceeeeeeccccccccccccccccccccccccccccccccccccccccccccccc---
Confidence 56666444444555554 778999999999999999999999999999999988888888887777777777776
Q ss_pred Cccccccccceecceeeeeeccc
Q psy1420 122 IESDSYSAYTIAFGIRNVTRIDK 144 (241)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~ 144 (241)
++++.+|+..++...|
T Consensus 218 -------~~~~~~G~~~i~~g~K 233 (233)
T PF01209_consen 218 -------YRPLTFGIVTIHVGTK 233 (233)
T ss_dssp -----------------------
T ss_pred -------ccccccccccccccCC
Confidence 7888888888776543
No 220
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=97.66 E-value=7.8e-05 Score=63.54 Aligned_cols=123 Identities=19% Similarity=0.201 Sum_probs=67.5
Q ss_pred HHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHH
Q psy1420 32 KDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLR 111 (241)
Q Consensus 32 ~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~ 111 (241)
...+++.++..++..++|+|||.|... .+.+- . ......+|+|+.+...+
T Consensus 31 ~~~il~~~~l~~~dvF~DlGSG~G~~v-------------~~aal----~-------------~~~~~~~GIEi~~~~~~ 80 (205)
T PF08123_consen 31 VSKILDELNLTPDDVFYDLGSGVGNVV-------------FQAAL----Q-------------TGCKKSVGIEILPELHD 80 (205)
T ss_dssp HHHHHHHTT--TT-EEEEES-TTSHHH-------------HHHHH----H-------------H--SEEEEEE-SHHHHH
T ss_pred HHHHHHHhCCCCCCEEEECCCCCCHHH-------------HHHHH----H-------------cCCcEEEEEEechHHHH
Confidence 344556777888999999999999977 33322 0 12345899999999887
Q ss_pred HHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCC---CceeEEeeeehhhccccHHHHH
Q psy1420 112 FLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIES---DSYSAYTIAFGIRNVTRIDKAL 188 (241)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~---~~~D~V~~~~~l~~~~~~~~~l 188 (241)
.+......+. ......+....++.+..+|+.+.+... ...|+|+++... .-++....|
T Consensus 81 ~a~~~~~~~~------------------~~~~~~g~~~~~v~l~~gdfl~~~~~~~~~s~AdvVf~Nn~~-F~~~l~~~L 141 (205)
T PF08123_consen 81 LAEELLEELK------------------KRMKHYGKRPGKVELIHGDFLDPDFVKDIWSDADVVFVNNTC-FDPDLNLAL 141 (205)
T ss_dssp HHHHHHHHHH------------------HHHHHCTB---EEEEECS-TTTHHHHHHHGHC-SEEEE--TT-T-HHHHHHH
T ss_pred HHHHHHHHHH------------------HHHHHhhcccccceeeccCccccHhHhhhhcCCCEEEEeccc-cCHHHHHHH
Confidence 7765443100 000112232246788888877653211 236899987654 234566777
Q ss_pred HHHHHhccCCcEEEE
Q psy1420 189 SEAYRVLKPGGRFLC 203 (241)
Q Consensus 189 ~~~~~~LkpgG~l~i 203 (241)
.+....||||.+++-
T Consensus 142 ~~~~~~lk~G~~IIs 156 (205)
T PF08123_consen 142 AELLLELKPGARIIS 156 (205)
T ss_dssp HHHHTTS-TT-EEEE
T ss_pred HHHHhcCCCCCEEEE
Confidence 888888999988764
No 221
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=97.65 E-value=7.4e-05 Score=67.06 Aligned_cols=91 Identities=14% Similarity=0.150 Sum_probs=65.1
Q ss_pred HHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhH
Q psy1420 31 WKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRL 110 (241)
Q Consensus 31 ~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~ 110 (241)
+.+.+++.+.+.++..++|++||.|..+ ..++..++ ....++|+|.++.++
T Consensus 7 ll~Evl~~L~~~pg~~vlD~TlG~GGhS-------------~~il~~~~----------------~~g~VigiD~D~~al 57 (296)
T PRK00050 7 LLDEVVDALAIKPDGIYVDGTFGGGGHS-------------RAILERLG----------------PKGRLIAIDRDPDAI 57 (296)
T ss_pred cHHHHHHhhCCCCCCEEEEeCcCChHHH-------------HHHHHhCC----------------CCCEEEEEcCCHHHH
Confidence 4566777788888899999999999999 44444110 246899999999999
Q ss_pred HHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCC--CCC--CceeEEeeeehhh
Q psy1420 111 RFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELP--IES--DSYSAYTIAFGIR 179 (241)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~--~~~D~V~~~~~l~ 179 (241)
+.+++++. + . +++.+++.|+.++. .+. .++|.|++..+..
T Consensus 58 ~~ak~~L~-------------------------~---~-~ri~~i~~~f~~l~~~l~~~~~~vDgIl~DLGvS 101 (296)
T PRK00050 58 AAAKDRLK-------------------------P---F-GRFTLVHGNFSNLKEVLAEGLGKVDGILLDLGVS 101 (296)
T ss_pred HHHHHhhc-------------------------c---C-CcEEEEeCCHHHHHHHHHcCCCccCEEEECCCcc
Confidence 99998775 2 1 36777888777652 111 2688888665543
No 222
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=97.65 E-value=5.2e-05 Score=63.45 Aligned_cols=140 Identities=11% Similarity=0.231 Sum_probs=85.8
Q ss_pred HHHHHHHhhcCC--CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCCh
Q psy1420 30 LWKDIFIDRLGP--THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPN 107 (241)
Q Consensus 30 ~~~~~~~~~l~~--~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~ 107 (241)
..++.+...+.. -++.++||+=||+|..+ ...+. + ...+++.+|.++
T Consensus 27 rvrealFniL~~~~~~g~~vLDLFaGSGalG-------------lEALS-------R-----------GA~~v~fVE~~~ 75 (183)
T PF03602_consen 27 RVREALFNILQPRNLEGARVLDLFAGSGALG-------------LEALS-------R-----------GAKSVVFVEKNR 75 (183)
T ss_dssp HHHHHHHHHHHCH-HTT-EEEETT-TTSHHH-------------HHHHH-------T-----------T-SEEEEEES-H
T ss_pred HHHHHHHHHhcccccCCCeEEEcCCccCccH-------------HHHHh-------c-----------CCCeEEEEECCH
Confidence 455666666554 37889999999999988 43332 1 346899999999
Q ss_pred HhHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCC-CC---CCCCceeEEeeeehhhcccc
Q psy1420 108 PRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEE-LP---IESDSYSAYTIAFGIRNVTR 183 (241)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~---~~~~~~D~V~~~~~l~~~~~ 183 (241)
...+.+++++. +.+.. .+..++..|+.. ++ ....+||+|++.--......
T Consensus 76 ~a~~~i~~N~~-------------------------~l~~~-~~~~v~~~d~~~~l~~~~~~~~~fDiIflDPPY~~~~~ 129 (183)
T PF03602_consen 76 KAIKIIKKNLE-------------------------KLGLE-DKIRVIKGDAFKFLLKLAKKGEKFDIIFLDPPYAKGLY 129 (183)
T ss_dssp HHHHHHHHHHH-------------------------HHT-G-GGEEEEESSHHHHHHHHHHCTS-EEEEEE--STTSCHH
T ss_pred HHHHHHHHHHH-------------------------HhCCC-cceeeeccCHHHHHHhhcccCCCceEEEECCCcccchH
Confidence 99999999998 55555 357788888543 21 23578999997533322111
Q ss_pred HHHHHHHHH--HhccCCcEEEEEecCHHHHHHHHHHCCCceEEEEEe
Q psy1420 184 IDKALSEAY--RVLKPGGRFLCLEFSHEEFKSMIESAGFQYVTYENL 228 (241)
Q Consensus 184 ~~~~l~~~~--~~LkpgG~l~i~~~~~~~~~~~l~~~Gf~~~~~~~~ 228 (241)
..+.++.+. .+|+++|.+++-......+.. .-.+|...+..+.
T Consensus 130 ~~~~l~~l~~~~~l~~~~~ii~E~~~~~~~~~--~~~~~~~~~~r~y 174 (183)
T PF03602_consen 130 YEELLELLAENNLLNEDGLIIIEHSKKEDLPE--SPGNWELIKERKY 174 (183)
T ss_dssp HHHHHHHHHHTTSEEEEEEEEEEEETTSSS-S--EETTEEEEEEEEE
T ss_pred HHHHHHHHHHCCCCCCCEEEEEEecCCCCCcc--CCCCEEEEEEecC
Confidence 466777776 689999988875433322211 1244655555544
No 223
>KOG0820|consensus
Probab=97.64 E-value=0.00021 Score=63.03 Aligned_cols=84 Identities=14% Similarity=0.221 Sum_probs=66.9
Q ss_pred HHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHH
Q psy1420 32 KDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLR 111 (241)
Q Consensus 32 ~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~ 111 (241)
.+.+.+..+.+++..|||+|.|||+.+ ..++. ....++++|.++.|+.
T Consensus 47 ~~~I~~ka~~k~tD~VLEvGPGTGnLT-------------~~lLe-------------------~~kkVvA~E~Dprmva 94 (315)
T KOG0820|consen 47 IDQIVEKADLKPTDVVLEVGPGTGNLT-------------VKLLE-------------------AGKKVVAVEIDPRMVA 94 (315)
T ss_pred HHHHHhccCCCCCCEEEEeCCCCCHHH-------------HHHHH-------------------hcCeEEEEecCcHHHH
Confidence 466666777789999999999999999 66666 5678999999999999
Q ss_pred HHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeee
Q psy1420 112 FLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIA 175 (241)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~ 175 (241)
...++....| .. ..++++.+|+...+.+ .||.++++
T Consensus 95 el~krv~gtp-------------------------~~-~kLqV~~gD~lK~d~P--~fd~cVsN 130 (315)
T KOG0820|consen 95 ELEKRVQGTP-------------------------KS-GKLQVLHGDFLKTDLP--RFDGCVSN 130 (315)
T ss_pred HHHHHhcCCC-------------------------cc-ceeeEEecccccCCCc--ccceeecc
Confidence 9998887221 12 4688999999887654 47888863
No 224
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=97.63 E-value=0.00023 Score=59.96 Aligned_cols=63 Identities=19% Similarity=0.333 Sum_probs=45.5
Q ss_pred CCceeEEeeeehhhc-------cccHHHHHHHHHHhccCCcEEEEEecCH-----------------HHHHHHHHHCCCc
Q psy1420 166 SDSYSAYTIAFGIRN-------VTRIDKALSEAYRVLKPGGRFLCLEFSH-----------------EEFKSMIESAGFQ 221 (241)
Q Consensus 166 ~~~~D~V~~~~~l~~-------~~~~~~~l~~~~~~LkpgG~l~i~~~~~-----------------~~~~~~l~~~Gf~ 221 (241)
.+..|++.....-|. -....++-..+++.|||||.+++.++.. ..+....+.+||+
T Consensus 120 pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~~~dt~~~~ri~~a~V~a~veaaGFk 199 (238)
T COG4798 120 PQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHRADPGSGLSDTITLHRIDPAVVIAEVEAAGFK 199 (238)
T ss_pred CCcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEeccccCCCChhhhhhhcccChHHHHHHHHhhcce
Confidence 445666665432221 2234788899999999999999988554 7778889999999
Q ss_pred eEEEEEe
Q psy1420 222 YVTYENL 228 (241)
Q Consensus 222 ~~~~~~~ 228 (241)
+.-...+
T Consensus 200 l~aeS~i 206 (238)
T COG4798 200 LEAESEI 206 (238)
T ss_pred eeeeehh
Confidence 8766655
No 225
>KOG3420|consensus
Probab=97.60 E-value=0.0001 Score=59.38 Aligned_cols=89 Identities=17% Similarity=0.214 Sum_probs=65.9
Q ss_pred HHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhH
Q psy1420 31 WKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRL 110 (241)
Q Consensus 31 ~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~ 110 (241)
+...+-...+.-.|.+++|+|||+|-.+ ....- + ....+.|+|+++.++
T Consensus 36 M~~~Ih~TygdiEgkkl~DLgcgcGmLs-------------~a~sm---------~---------~~e~vlGfDIdpeAL 84 (185)
T KOG3420|consen 36 MLYTIHNTYGDIEGKKLKDLGCGCGMLS-------------IAFSM---------P---------KNESVLGFDIDPEAL 84 (185)
T ss_pred HHHHHHhhhccccCcchhhhcCchhhhH-------------HHhhc---------C---------CCceEEeeecCHHHH
Confidence 3344444455567889999999999877 33321 1 356799999999999
Q ss_pred HHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehh
Q psy1420 111 RFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGI 178 (241)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l 178 (241)
+.+.++++ ...+ +++++++|+..+....+.||.++.+--+
T Consensus 85 EIf~rNae-------------------------EfEv---qidlLqcdildle~~~g~fDtaviNppF 124 (185)
T KOG3420|consen 85 EIFTRNAE-------------------------EFEV---QIDLLQCDILDLELKGGIFDTAVINPPF 124 (185)
T ss_pred HHHhhchH-------------------------Hhhh---hhheeeeeccchhccCCeEeeEEecCCC
Confidence 99999988 4443 3688999998887667899999876444
No 226
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=97.60 E-value=8.6e-05 Score=61.28 Aligned_cols=60 Identities=23% Similarity=0.343 Sum_probs=35.2
Q ss_pred CceeEEeeeehhh-----------ccccHHHHHHHHHHhccCCcEEEEEecCH---HHHHHHHHHCCCceEEEEE
Q psy1420 167 DSYSAYTIAFGIR-----------NVTRIDKALSEAYRVLKPGGRFLCLEFSH---EEFKSMIESAGFQYVTYEN 227 (241)
Q Consensus 167 ~~~D~V~~~~~l~-----------~~~~~~~~l~~~~~~LkpgG~l~i~~~~~---~~~~~~l~~~Gf~~~~~~~ 227 (241)
.++|+|+|-.+.. ...-....+.-+.+.|+|||.+++..+.. .++...++. .|+.+.+..
T Consensus 90 ~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~~~~~~~~~l~~-~F~~v~~~K 163 (181)
T PF01728_consen 90 EKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKGPEIEELIYLLKR-CFSKVKIVK 163 (181)
T ss_dssp CSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSSTTSHHHHHHHHH-HHHHEEEEE
T ss_pred cCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCccHHHHHHHHHh-CCeEEEEEE
Confidence 6899999876322 11222456666778899999998876554 345555544 455555443
No 227
>PRK04148 hypothetical protein; Provisional
Probab=97.57 E-value=0.00068 Score=53.97 Aligned_cols=107 Identities=12% Similarity=0.048 Sum_probs=68.3
Q ss_pred HHHHhhcCCCCCCeEEEEecCCCc-chhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHH
Q psy1420 33 DIFIDRLGPTHDTKLLDVAGGTDP-LANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLR 111 (241)
Q Consensus 33 ~~~~~~l~~~~~~~vLdvG~G~G~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~ 111 (241)
+.+.+.+...++.+++|+|||.|. .+ ..+.. .+..++++|+++..++
T Consensus 6 ~~l~~~~~~~~~~kileIG~GfG~~vA-------------~~L~~-------------------~G~~ViaIDi~~~aV~ 53 (134)
T PRK04148 6 EFIAENYEKGKNKKIVELGIGFYFKVA-------------KKLKE-------------------SGFDVIVIDINEKAVE 53 (134)
T ss_pred HHHHHhcccccCCEEEEEEecCCHHHH-------------HHHHH-------------------CCCEEEEEECCHHHHH
Confidence 334455555566899999999985 44 22222 4679999999999888
Q ss_pred HHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCC-CCceeEEeeeehhhccccHHHHHHH
Q psy1420 112 FLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIE-SDSYSAYTIAFGIRNVTRIDKALSE 190 (241)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~D~V~~~~~l~~~~~~~~~l~~ 190 (241)
.++... +.+...|..+.+.. -..+|+|.+. +--+++...+-+
T Consensus 54 ~a~~~~----------------------------------~~~v~dDlf~p~~~~y~~a~liysi---rpp~el~~~~~~ 96 (134)
T PRK04148 54 KAKKLG----------------------------------LNAFVDDLFNPNLEIYKNAKLIYSI---RPPRDLQPFILE 96 (134)
T ss_pred HHHHhC----------------------------------CeEEECcCCCCCHHHHhcCCEEEEe---CCCHHHHHHHHH
Confidence 776442 46788998877543 3468888753 223344455555
Q ss_pred HHHhccCCcEEEEEecCHHH
Q psy1420 191 AYRVLKPGGRFLCLEFSHEE 210 (241)
Q Consensus 191 ~~~~LkpgG~l~i~~~~~~~ 210 (241)
+.+.+ |.-+++...+.+.
T Consensus 97 la~~~--~~~~~i~~l~~e~ 114 (134)
T PRK04148 97 LAKKI--NVPLIIKPLSGEE 114 (134)
T ss_pred HHHHc--CCCEEEEcCCCCC
Confidence 55543 4456666555443
No 228
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.54 E-value=0.0033 Score=53.38 Aligned_cols=130 Identities=15% Similarity=0.154 Sum_probs=90.8
Q ss_pred cCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHh
Q psy1420 39 LGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAE 118 (241)
Q Consensus 39 l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~ 118 (241)
+..+++.+||=+|+.+|++. .++..+++ ...+++++.|+...+.....+.
T Consensus 72 ~pi~~g~~VLYLGAasGTTv-------------SHVSDIv~-----------------~G~iYaVEfs~R~~reLl~~a~ 121 (231)
T COG1889 72 FPIKEGSKVLYLGAASGTTV-------------SHVSDIVG-----------------EGRIYAVEFSPRPMRELLDVAE 121 (231)
T ss_pred CCcCCCCEEEEeeccCCCcH-------------hHHHhccC-----------------CCcEEEEEecchhHHHHHHHHH
Confidence 44589999999999999999 77777433 4579999999998877776665
Q ss_pred cCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCC---CCCCceeEEeeeehhhccccHHHHHHHHHHhc
Q psy1420 119 ELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELP---IESDSYSAYTIAFGIRNVTRIDKALSEAYRVL 195 (241)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~L 195 (241)
+. +++-.+-.|+..+. .--+.+|+|+.--. .-....-+..++..-|
T Consensus 122 -------------------------~R----~Ni~PIL~DA~~P~~Y~~~Ve~VDviy~DVA--Qp~Qa~I~~~Na~~FL 170 (231)
T COG1889 122 -------------------------KR----PNIIPILEDARKPEKYRHLVEKVDVIYQDVA--QPNQAEILADNAEFFL 170 (231)
T ss_pred -------------------------hC----CCceeeecccCCcHHhhhhcccccEEEEecC--CchHHHHHHHHHHHhc
Confidence 21 35666777877652 11356899884211 1112345667888899
Q ss_pred cCCcEEEEEecCH------------HHHHHHHHHCCCceEEEEEec
Q psy1420 196 KPGGRFLCLEFSH------------EEFKSMIESAGFQYVTYENLT 229 (241)
Q Consensus 196 kpgG~l~i~~~~~------------~~~~~~l~~~Gf~~~~~~~~~ 229 (241)
|+||+++++--.. ++-.+.|++.||++.+..++.
T Consensus 171 k~~G~~~i~iKArSIdvT~dp~~vf~~ev~kL~~~~f~i~e~~~Le 216 (231)
T COG1889 171 KKGGYVVIAIKARSIDVTADPEEVFKDEVEKLEEGGFEILEVVDLE 216 (231)
T ss_pred ccCCeEEEEEEeecccccCCHHHHHHHHHHHHHhcCceeeEEeccC
Confidence 9999877643111 445567888999998888773
No 229
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=97.52 E-value=0.00031 Score=61.79 Aligned_cols=86 Identities=13% Similarity=0.130 Sum_probs=67.5
Q ss_pred HHHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHh
Q psy1420 30 LWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPR 109 (241)
Q Consensus 30 ~~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~ 109 (241)
...+.+.+..+..++..|+|||+|.|.++ ..++. ....++++|+++.+
T Consensus 17 ~v~~kIv~~a~~~~~d~VlEIGpG~GaLT-------------~~Ll~-------------------~~~~v~aiEiD~~l 64 (259)
T COG0030 17 NVIDKIVEAANISPGDNVLEIGPGLGALT-------------EPLLE-------------------RAARVTAIEIDRRL 64 (259)
T ss_pred HHHHHHHHhcCCCCCCeEEEECCCCCHHH-------------HHHHh-------------------hcCeEEEEEeCHHH
Confidence 34567777778888889999999999999 66665 46679999999999
Q ss_pred HHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCC-ceeEEeeee
Q psy1420 110 LRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESD-SYSAYTIAF 176 (241)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~-~~D~V~~~~ 176 (241)
++...+... ..++++++.+|+...+++.- .++.|+++.
T Consensus 65 ~~~L~~~~~-----------------------------~~~n~~vi~~DaLk~d~~~l~~~~~vVaNl 103 (259)
T COG0030 65 AEVLKERFA-----------------------------PYDNLTVINGDALKFDFPSLAQPYKVVANL 103 (259)
T ss_pred HHHHHHhcc-----------------------------cccceEEEeCchhcCcchhhcCCCEEEEcC
Confidence 999987754 11479999999998876542 467777653
No 230
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=97.51 E-value=0.0018 Score=64.78 Aligned_cols=101 Identities=13% Similarity=0.035 Sum_probs=65.2
Q ss_pred CCceeecCChHhHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCC--CCceeEEeee
Q psy1420 98 QFPNQIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIE--SDSYSAYTIA 175 (241)
Q Consensus 98 ~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~~D~V~~~ 175 (241)
..++|+|+++.+++.++.++. ..++. +.+.+..+|+.+++.+ .+++|+|+++
T Consensus 257 ~~i~G~Did~~av~~A~~N~~-------------------------~~g~~-~~i~~~~~D~~~~~~~~~~~~~d~IvtN 310 (702)
T PRK11783 257 SKFYGSDIDPRVIQAARKNAR-------------------------RAGVA-ELITFEVKDVADLKNPLPKGPTGLVISN 310 (702)
T ss_pred ceEEEEECCHHHHHHHHHHHH-------------------------HcCCC-cceEEEeCChhhcccccccCCCCEEEEC
Confidence 368999999999999999998 66765 5688999999887543 3479999987
Q ss_pred e--hhhcc--ccHHHH---HHHHHHhccCCcEEEEEecCHHHHHHHHHHCCCceEEEEEe
Q psy1420 176 F--GIRNV--TRIDKA---LSEAYRVLKPGGRFLCLEFSHEEFKSMIESAGFQYVTYENL 228 (241)
Q Consensus 176 ~--~l~~~--~~~~~~---l~~~~~~LkpgG~l~i~~~~~~~~~~~l~~~Gf~~~~~~~~ 228 (241)
- +.+.- .+...+ +.+..+...+|+.+++.+... ++.+..|+...+...+
T Consensus 311 PPYg~r~~~~~~l~~lY~~lg~~lk~~~~g~~~~llt~~~----~l~~~~~l~~~~~~~l 366 (702)
T PRK11783 311 PPYGERLGEEPALIALYSQLGRRLKQQFGGWNAALFSSSP----ELLSCLGLRADKQYKL 366 (702)
T ss_pred CCCcCccCchHHHHHHHHHHHHHHHHhCCCCeEEEEeCCH----HHHHHhCCCCCCCeee
Confidence 3 32221 122222 333334444898887766543 2334445554333333
No 231
>KOG1663|consensus
Probab=97.48 E-value=0.00064 Score=58.56 Aligned_cols=103 Identities=16% Similarity=0.113 Sum_probs=77.1
Q ss_pred CCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCC
Q psy1420 43 HDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPI 122 (241)
Q Consensus 43 ~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~ 122 (241)
...+++|+|.=||+.+ ..++. .+. ...+++++|+++...+.+.....
T Consensus 73 ~ak~~lelGvfTGySa-------------L~~Al----alp------------~dGrv~a~eid~~~~~~~~~~~k---- 119 (237)
T KOG1663|consen 73 NAKRTLELGVFTGYSA-------------LAVAL----ALP------------EDGRVVAIEIDADAYEIGLELVK---- 119 (237)
T ss_pred CCceEEEEecccCHHH-------------HHHHH----hcC------------CCceEEEEecChHHHHHhHHHHH----
Confidence 4558999999999877 33322 111 47899999999999999977776
Q ss_pred ccccccccceecceeeeeeccccCCCCCCeeEEecccCCC------CCCCCceeEEeeeehhhcc-ccHHHHHHHHHHhc
Q psy1420 123 ESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL------PIESDSYSAYTIAFGIRNV-TRIDKALSEAYRVL 195 (241)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~------~~~~~~~D~V~~~~~l~~~-~~~~~~l~~~~~~L 195 (241)
..+.. ..++++++.+.+. ..+.++||.++. .+. .+......++.+++
T Consensus 120 ---------------------~agv~-~KI~~i~g~a~esLd~l~~~~~~~tfDfaFv----DadK~nY~~y~e~~l~Ll 173 (237)
T KOG1663|consen 120 ---------------------LAGVD-HKITFIEGPALESLDELLADGESGTFDFAFV----DADKDNYSNYYERLLRLL 173 (237)
T ss_pred ---------------------hcccc-ceeeeeecchhhhHHHHHhcCCCCceeEEEE----ccchHHHHHHHHHHHhhc
Confidence 66666 6788888886653 245679999985 333 23457888999999
Q ss_pred cCCcEEEEE
Q psy1420 196 KPGGRFLCL 204 (241)
Q Consensus 196 kpgG~l~i~ 204 (241)
++||.+++-
T Consensus 174 r~GGvi~~D 182 (237)
T KOG1663|consen 174 RVGGVIVVD 182 (237)
T ss_pred ccccEEEEe
Confidence 999999874
No 232
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=97.45 E-value=3e-05 Score=67.47 Aligned_cols=90 Identities=29% Similarity=0.430 Sum_probs=69.1
Q ss_pred CCCCeEEEEecCCCcchhHHHHHHhhhhhhhh-hhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcC
Q psy1420 42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQ-VIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEEL 120 (241)
Q Consensus 42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~ 120 (241)
+|+++++.+..+..... .++++|.+|+.. ++|.+|++.++++.+|+||++|....+..-++...+.+.....+.
T Consensus 147 KpgG~~~vle~~~p~~~---~~~~~~~~~~~~~v~P~~g~~~~~~~~~y~yL~eSi~~~p~~~~l~~~~~~~gf~~i~-- 221 (238)
T COG2226 147 KPGGRLLVLEFSKPDNP---VLRKAYILYYFKYVLPLIGKLVAKDAEAYEYLAESIRRFPDQEELKQMIEKAGFEEVR-- 221 (238)
T ss_pred cCCeEEEEEEcCCCCch---hhHHHHHHHHHHhHhhhhceeeecChHHHHHHHHHHHhCCCHHHHHHHHHhcCceEEe--
Confidence 67777777777777665 778999988888 999999999999999999999988777666655554443333332
Q ss_pred CCccccccccceecceeeeeeccc
Q psy1420 121 PIESDSYSAYTIAFGIRNVTRIDK 144 (241)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~ 144 (241)
++++.+|+..++.+.+
T Consensus 222 --------~~~~~~G~~~l~~g~K 237 (238)
T COG2226 222 --------YENLTFGIVALHRGYK 237 (238)
T ss_pred --------eEeeeeeeEEEEEEec
Confidence 7888888888887654
No 233
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=97.35 E-value=0.001 Score=59.33 Aligned_cols=133 Identities=22% Similarity=0.324 Sum_probs=91.7
Q ss_pred HhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHH
Q psy1420 36 IDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEA 115 (241)
Q Consensus 36 ~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~ 115 (241)
...+.+.++.+|||+.+++|.-+ .+++..|. ....+++.|+++..+.....
T Consensus 78 ~~~L~~~~~~~VLD~CAapGgKt-------------~~la~~~~----------------~~g~i~A~D~~~~Rl~~l~~ 128 (283)
T PF01189_consen 78 ALALDPQPGERVLDMCAAPGGKT-------------THLAELMG----------------NKGEIVANDISPKRLKRLKE 128 (283)
T ss_dssp HHHHTTTTTSEEEESSCTTSHHH-------------HHHHHHTT----------------TTSEEEEEESSHHHHHHHHH
T ss_pred cccccccccccccccccCCCCce-------------eeeeeccc----------------chhHHHHhccCHHHHHHHHH
Confidence 34567889999999999999987 44444222 25689999999999999999
Q ss_pred HHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCC--CCCCceeEEeee----e--hhhcccc----
Q psy1420 116 NAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELP--IESDSYSAYTIA----F--GIRNVTR---- 183 (241)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~D~V~~~----~--~l~~~~~---- 183 (241)
++. +.++. ++.....|..... .....||.|+.- . .++.-++
T Consensus 129 ~~~-------------------------r~g~~--~v~~~~~D~~~~~~~~~~~~fd~VlvDaPCSg~G~i~r~p~~~~~ 181 (283)
T PF01189_consen 129 NLK-------------------------RLGVF--NVIVINADARKLDPKKPESKFDRVLVDAPCSGLGTIRRNPDIKWR 181 (283)
T ss_dssp HHH-------------------------HTT-S--SEEEEESHHHHHHHHHHTTTEEEEEEECSCCCGGGTTTCTTHHHH
T ss_pred HHH-------------------------hcCCc--eEEEEeeccccccccccccccchhhcCCCccchhhhhhccchhhc
Confidence 988 66655 5666666665541 223469999842 1 2221111
Q ss_pred ------------HHHHHHHHHHhc----cCCcEEEEEecCH------HHHHHHHHHC-CCceEE
Q psy1420 184 ------------IDKALSEAYRVL----KPGGRFLCLEFSH------EEFKSMIESA-GFQYVT 224 (241)
Q Consensus 184 ------------~~~~l~~~~~~L----kpgG~l~i~~~~~------~~~~~~l~~~-Gf~~~~ 224 (241)
-.+.|+.+.+.+ ||||+++-++-+- +.++..+++. .|..+.
T Consensus 182 ~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~~eENE~vV~~fl~~~~~~~l~~ 245 (283)
T PF01189_consen 182 RSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLSPEENEEVVEKFLKRHPDFELVP 245 (283)
T ss_dssp E-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHHGGGTHHHHHHHHHHSTSEEEEC
T ss_pred ccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHHHHHHHHHHHHHHHhCCCcEEEe
Confidence 147889999999 9999999887555 5556666666 455443
No 234
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=97.34 E-value=0.0059 Score=53.64 Aligned_cols=105 Identities=11% Similarity=0.166 Sum_probs=72.6
Q ss_pred HHHHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChH
Q psy1420 29 RLWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNP 108 (241)
Q Consensus 29 ~~~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~ 108 (241)
....+.+.+.++..++..|+|+|+|+|.++ ..++. ....++++|+++.
T Consensus 16 ~~~~~~Iv~~~~~~~~~~VlEiGpG~G~lT-------------~~L~~-------------------~~~~v~~vE~d~~ 63 (262)
T PF00398_consen 16 PNIADKIVDALDLSEGDTVLEIGPGPGALT-------------RELLK-------------------RGKRVIAVEIDPD 63 (262)
T ss_dssp HHHHHHHHHHHTCGTTSEEEEESSTTSCCH-------------HHHHH-------------------HSSEEEEEESSHH
T ss_pred HHHHHHHHHhcCCCCCCEEEEeCCCCccch-------------hhHhc-------------------ccCcceeecCcHh
Confidence 344567777778778999999999999999 66655 3468999999999
Q ss_pred hHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCC---CceeEEeeeehhhccccHH
Q psy1420 109 RLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIES---DSYSAYTIAFGIRNVTRID 185 (241)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~---~~~D~V~~~~~l~~~~~~~ 185 (241)
+.+..++... ..++++++.+|+....... .....|+++.-. ++. .
T Consensus 64 ~~~~L~~~~~-----------------------------~~~~~~vi~~D~l~~~~~~~~~~~~~~vv~NlPy-~is--~ 111 (262)
T PF00398_consen 64 LAKHLKERFA-----------------------------SNPNVEVINGDFLKWDLYDLLKNQPLLVVGNLPY-NIS--S 111 (262)
T ss_dssp HHHHHHHHCT-----------------------------TCSSEEEEES-TTTSCGGGHCSSSEEEEEEEETG-TGH--H
T ss_pred HHHHHHHHhh-----------------------------hcccceeeecchhccccHHhhcCCceEEEEEecc-cch--H
Confidence 9999887654 1257999999999876543 344566665443 222 2
Q ss_pred HHHHHHHHhccC
Q psy1420 186 KALSEAYRVLKP 197 (241)
Q Consensus 186 ~~l~~~~~~Lkp 197 (241)
..+..+...-+.
T Consensus 112 ~il~~ll~~~~~ 123 (262)
T PF00398_consen 112 PILRKLLELYRF 123 (262)
T ss_dssp HHHHHHHHHGGG
T ss_pred HHHHHHhhcccc
Confidence 445555443333
No 235
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.17 E-value=0.0062 Score=52.89 Aligned_cols=129 Identities=16% Similarity=0.202 Sum_probs=85.6
Q ss_pred HHHhhcCC-CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHH
Q psy1420 34 IFIDRLGP-THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRF 112 (241)
Q Consensus 34 ~~~~~l~~-~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~ 112 (241)
..++.+.. .++..+||+|+.||.++ .-++. ....+++++|..-..+..
T Consensus 69 ~ale~F~l~~k~kv~LDiGsSTGGFT-------------d~lLq------------------~gAk~VyavDVG~~Ql~~ 117 (245)
T COG1189 69 KALEEFELDVKGKVVLDIGSSTGGFT-------------DVLLQ------------------RGAKHVYAVDVGYGQLHW 117 (245)
T ss_pred HHHHhcCcCCCCCEEEEecCCCccHH-------------HHHHH------------------cCCcEEEEEEccCCccCH
Confidence 34455554 56778999999999999 33333 135689999998877766
Q ss_pred HHHHHhcCCCccccccccceecceeeeeeccccCCCCCCe-eEEecccCCCCCC--CCceeEEeeeehhhccccHHHHHH
Q psy1420 113 LEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRL-RFLEANAEELPIE--SDSYSAYTIAFGIRNVTRIDKALS 189 (241)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~d~~~~~~~--~~~~D~V~~~~~l~~~~~~~~~l~ 189 (241)
-.+.-. ++ .+-..|+..+..+ .+..|+++|--++ .....+|.
T Consensus 118 kLR~d~--------------------------------rV~~~E~tN~r~l~~~~~~~~~d~~v~DvSF---ISL~~iLp 162 (245)
T COG1189 118 KLRNDP--------------------------------RVIVLERTNVRYLTPEDFTEKPDLIVIDVSF---ISLKLILP 162 (245)
T ss_pred hHhcCC--------------------------------cEEEEecCChhhCCHHHcccCCCeEEEEeeh---hhHHHHHH
Confidence 443322 23 3334444443211 2367888876554 35567888
Q ss_pred HHHHhccCCcEEEEEecCH------------------------HHHHHHHHHCCCceEEEEEe
Q psy1420 190 EAYRVLKPGGRFLCLEFSH------------------------EEFKSMIESAGFQYVTYENL 228 (241)
Q Consensus 190 ~~~~~LkpgG~l~i~~~~~------------------------~~~~~~l~~~Gf~~~~~~~~ 228 (241)
.+..+++|++-++..--.. ..+.+++.+.||++......
T Consensus 163 ~l~~l~~~~~~~v~LvKPQFEagr~~v~kkGvv~d~~~~~~v~~~i~~~~~~~g~~~~gl~~S 225 (245)
T COG1189 163 ALLLLLKDGGDLVLLVKPQFEAGREQVGKKGVVRDPKLHAEVLSKIENFAKELGFQVKGLIKS 225 (245)
T ss_pred HHHHhcCCCceEEEEecchhhhhhhhcCcCceecCcchHHHHHHHHHHHHhhcCcEEeeeEcc
Confidence 8999999998877643111 78889999999998776644
No 236
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=97.08 E-value=0.005 Score=51.70 Aligned_cols=140 Identities=14% Similarity=0.177 Sum_probs=91.5
Q ss_pred HHHHHHHHhhcCC--CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCC
Q psy1420 29 RLWKDIFIDRLGP--THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIP 106 (241)
Q Consensus 29 ~~~~~~~~~~l~~--~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s 106 (241)
...++.+...+.+ -.+.++||+=+|+|... ...+. + ....++.+|.+
T Consensus 27 drVREalFNil~~~~i~g~~~LDlFAGSGaLG-------------lEAlS-------R-----------GA~~~~~vE~~ 75 (187)
T COG0742 27 DRVREALFNILAPDEIEGARVLDLFAGSGALG-------------LEALS-------R-----------GAARVVFVEKD 75 (187)
T ss_pred hHHHHHHHHhccccccCCCEEEEecCCccHhH-------------HHHHh-------C-----------CCceEEEEecC
Confidence 3567888888876 68899999999999988 33332 1 35689999999
Q ss_pred hHhHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCC-CCC--CCceeEEeeeehhh-ccc
Q psy1420 107 NPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL-PIE--SDSYSAYTIAFGIR-NVT 182 (241)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~--~~~~D~V~~~~~l~-~~~ 182 (241)
......+++++. ..+.. .+..++..|+... +.. ..+||+|+.---.+ .+-
T Consensus 76 ~~a~~~l~~N~~-------------------------~l~~~-~~~~~~~~da~~~L~~~~~~~~FDlVflDPPy~~~l~ 129 (187)
T COG0742 76 RKAVKILKENLK-------------------------ALGLE-GEARVLRNDALRALKQLGTREPFDLVFLDPPYAKGLL 129 (187)
T ss_pred HHHHHHHHHHHH-------------------------HhCCc-cceEEEeecHHHHHHhcCCCCcccEEEeCCCCccchh
Confidence 999999999988 44433 4677778887632 111 22599999754333 122
Q ss_pred cHHHHHHH--HHHhccCCcEEEEEecCHHHHHHHHHHCCCceEEEEE
Q psy1420 183 RIDKALSE--AYRVLKPGGRFLCLEFSHEEFKSMIESAGFQYVTYEN 227 (241)
Q Consensus 183 ~~~~~l~~--~~~~LkpgG~l~i~~~~~~~~~~~l~~~Gf~~~~~~~ 227 (241)
+....+.. -..+|+|+|.+++-.....++. ..-.+|.+.+...
T Consensus 130 ~~~~~~~~~~~~~~L~~~~~iv~E~~~~~~~~--~~~~~~~~~r~k~ 174 (187)
T COG0742 130 DKELALLLLEENGWLKPGALIVVEHDKDVELP--ELPANFELHREKK 174 (187)
T ss_pred hHHHHHHHHHhcCCcCCCcEEEEEeCCCcCcc--ccCCCeEEEEEee
Confidence 23444444 4468999999988443332222 2345566555443
No 237
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=97.07 E-value=0.0053 Score=57.06 Aligned_cols=49 Identities=14% Similarity=0.215 Sum_probs=32.7
Q ss_pred cccCCCCCCCCceeEEeeeehhhcccc--------------------------------------HHHHHHHHHHhccCC
Q psy1420 157 ANAEELPIESDSYSAYTIAFGIRNVTR--------------------------------------IDKALSEAYRVLKPG 198 (241)
Q Consensus 157 ~d~~~~~~~~~~~D~V~~~~~l~~~~~--------------------------------------~~~~l~~~~~~Lkpg 198 (241)
+.+..-=+|.++.+++++++++||+.. ...+|+.=.+-|.||
T Consensus 151 GSFY~RLfP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~Ra~ELvpG 230 (386)
T PLN02668 151 GSFYRRLFPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRARAQEMKRG 230 (386)
T ss_pred ccccccccCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 334333356788899999988887542 123444445678999
Q ss_pred cEEEEEe
Q psy1420 199 GRFLCLE 205 (241)
Q Consensus 199 G~l~i~~ 205 (241)
|+++++-
T Consensus 231 G~mvl~~ 237 (386)
T PLN02668 231 GAMFLVC 237 (386)
T ss_pred cEEEEEE
Confidence 9998864
No 238
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=97.07 E-value=0.0025 Score=59.06 Aligned_cols=101 Identities=11% Similarity=0.046 Sum_probs=73.7
Q ss_pred CCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCCc
Q psy1420 44 DTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIE 123 (241)
Q Consensus 44 ~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~ 123 (241)
+.+|||+.||+|..+ .+++. .. ....++++.|+++..++.+++++.
T Consensus 45 ~~~vLD~faGsG~rg-------------ir~a~-------e~---------~ga~~Vv~nD~n~~Av~~i~~N~~----- 90 (374)
T TIGR00308 45 YINIADALSASGIRA-------------IRYAH-------EI---------EGVREVFANDINPKAVESIKNNVE----- 90 (374)
T ss_pred CCEEEECCCchhHHH-------------HHHHh-------hC---------CCCCEEEEEeCCHHHHHHHHHHHH-----
Confidence 468999999999988 44433 10 023579999999999999999987
Q ss_pred cccccccceecceeeeeeccccCCCCCCeeEEecccCCCC-CCCCceeEEeeeehhhccccHHHHHHHHHHhccCCcEEE
Q psy1420 124 SDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELP-IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFL 202 (241)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~ 202 (241)
..++. ++.+.+.|+...- ....+||+|...- ...+..++..+.+.+++||.++
T Consensus 91 --------------------~N~~~--~~~v~~~Da~~~l~~~~~~fDvIdlDP----fGs~~~fld~al~~~~~~glL~ 144 (374)
T TIGR00308 91 --------------------YNSVE--NIEVPNEDAANVLRYRNRKFHVIDIDP----FGTPAPFVDSAIQASAERGLLL 144 (374)
T ss_pred --------------------HhCCC--cEEEEchhHHHHHHHhCCCCCEEEeCC----CCCcHHHHHHHHHhcccCCEEE
Confidence 33332 4677888876542 1135799997532 2355688999999999999999
Q ss_pred EE
Q psy1420 203 CL 204 (241)
Q Consensus 203 i~ 204 (241)
++
T Consensus 145 vT 146 (374)
T TIGR00308 145 VT 146 (374)
T ss_pred EE
Confidence 86
No 239
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=97.05 E-value=0.0028 Score=50.77 Aligned_cols=105 Identities=21% Similarity=0.310 Sum_probs=69.1
Q ss_pred CceeecCChHhHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCC--CCCCceeEEeeee
Q psy1420 99 FPNQIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELP--IESDSYSAYTIAF 176 (241)
Q Consensus 99 ~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~D~V~~~~ 176 (241)
+++++|+-+.+++..+++.. +.+.. .+++++..+=+.+. .+++++|+++.+.
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~-------------------------~~~~~-~~v~li~~sHe~l~~~i~~~~v~~~iFNL 54 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLE-------------------------EAGLE-DRVTLILDSHENLDEYIPEGPVDAAIFNL 54 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHH-------------------------HTT-G-SGEEEEES-GGGGGGT--S--EEEEEEEE
T ss_pred CEEEEECHHHHHHHHHHHHH-------------------------hcCCC-CcEEEEECCHHHHHhhCccCCcCEEEEEC
Confidence 37899999999999999998 66655 47888888766553 2234899999887
Q ss_pred hhh------ccccH---HHHHHHHHHhccCCcEEEEEecCH--------HHHHHHHH---HCCCceEEEEEec
Q psy1420 177 GIR------NVTRI---DKALSEAYRVLKPGGRFLCLEFSH--------EEFKSMIE---SAGFQYVTYENLT 229 (241)
Q Consensus 177 ~l~------~~~~~---~~~l~~~~~~LkpgG~l~i~~~~~--------~~~~~~l~---~~Gf~~~~~~~~~ 229 (241)
+.- -++.+ ..+++.+.++|+|||.+.++.+.. +.+.++++ +..|.+..+.-++
T Consensus 55 GYLPggDk~i~T~~~TTl~Al~~al~lL~~gG~i~iv~Y~GH~gG~eE~~av~~~~~~L~~~~~~V~~~~~~N 127 (140)
T PF06962_consen 55 GYLPGGDKSITTKPETTLKALEAALELLKPGGIITIVVYPGHPGGKEESEAVEEFLASLDQKEFNVLKYQFIN 127 (140)
T ss_dssp SB-CTS-TTSB--HHHHHHHHHHHHHHEEEEEEEEEEE--STCHHHHHHHHHHHHHHTS-TTTEEEEEEEESS
T ss_pred CcCCCCCCCCCcCcHHHHHHHHHHHHhhccCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCcceEEEEEEEccC
Confidence 642 12233 588899999999999999887653 44455554 4557776666553
No 240
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=97.03 E-value=0.0089 Score=57.65 Aligned_cols=54 Identities=15% Similarity=0.059 Sum_probs=36.2
Q ss_pred CCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHh
Q psy1420 43 HDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAE 118 (241)
Q Consensus 43 ~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~ 118 (241)
...+|+|.+||+|.+. ..++..+... .... .....++++|+++..+..+..++.
T Consensus 31 ~~~~ilDP~cGsG~fl-------------~~~~~~~~~~-~~~~--------~~~~~i~g~DId~~a~~~a~~~l~ 84 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLI-------------AALLKKNEEI-NYFK--------EVELNIYFADIDKTLLKRAKKLLG 84 (524)
T ss_pred cceEEEeCCCCccHHH-------------HHHHHHHHhc-CCcc--------cceeeeeeechhHHHHHHHHHHHh
Confidence 4568999999999987 4443311100 0000 023578999999999999988776
No 241
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=97.01 E-value=0.004 Score=55.37 Aligned_cols=143 Identities=15% Similarity=0.234 Sum_probs=74.1
Q ss_pred CCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCCc
Q psy1420 44 DTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIE 123 (241)
Q Consensus 44 ~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~ 123 (241)
+.+|+-+|||+=..+.+ .++.... ....+.++|+++.+++.+++.+..
T Consensus 121 p~rVaFIGSGPLPlT~i--------------------~la~~~~--------~~~~v~~iD~d~~A~~~a~~lv~~---- 168 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSI--------------------VLAKQHG--------PGARVHNIDIDPEANELARRLVAS---- 168 (276)
T ss_dssp --EEEEE---SS-HHHH--------------------HHH--HT--------T--EEEEEESSHHHHHHHHHHHH-----
T ss_pred cceEEEEcCCCcchHHH--------------------HHHHHhC--------CCCeEEEEeCCHHHHHHHHHHHhh----
Confidence 35999999998666611 1111100 245688999999999999876651
Q ss_pred cccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhh-ccccHHHHHHHHHHhccCCcEEE
Q psy1420 124 SDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIR-NVTRIDKALSEAYRVLKPGGRFL 202 (241)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~-~~~~~~~~l~~~~~~LkpgG~l~ 202 (241)
..++. .+++++++|..+.+..-..||+|+...... .-.+..+.+..+.+.++||..++
T Consensus 169 --------------------~~~L~-~~m~f~~~d~~~~~~dl~~~DvV~lAalVg~~~e~K~~Il~~l~~~m~~ga~l~ 227 (276)
T PF03059_consen 169 --------------------DLGLS-KRMSFITADVLDVTYDLKEYDVVFLAALVGMDAEPKEEILEHLAKHMAPGARLV 227 (276)
T ss_dssp ----------------------HH--SSEEEEES-GGGG-GG----SEEEE-TT-S----SHHHHHHHHHHHS-TTSEEE
T ss_pred --------------------ccccc-CCeEEEecchhccccccccCCEEEEhhhcccccchHHHHHHHHHhhCCCCcEEE
Confidence 12333 579999999987765556899998765443 34477899999999999999988
Q ss_pred EEecCH------HHHHHHHHHCCCceEEEEEecCcee-EEEeeec
Q psy1420 203 CLEFSH------EEFKSMIESAGFQYVTYENLTFGVV-AIHSGFK 240 (241)
Q Consensus 203 i~~~~~------~~~~~~l~~~Gf~~~~~~~~~~~~~-~~~~~~~ 240 (241)
+-.... ..+... .-.||+.....+=+..|+ .++.+||
T Consensus 228 ~Rsa~GlR~~LYp~vd~~-~l~gf~~~~~~hP~~~ViNSvv~~rk 271 (276)
T PF03059_consen 228 VRSAHGLRSFLYPVVDPE-DLRGFEVLAVVHPTDEVINSVVFARK 271 (276)
T ss_dssp EEE--GGGGGSS----TG-GGTTEEEEEEE---TT---EEEEE--
T ss_pred EecchhhHHHcCCCCChH-HCCCeEEEEEECCCCCceeEEEEEEe
Confidence 753222 111111 122888766555443333 4455555
No 242
>KOG1540|consensus
Probab=97.01 E-value=0.00031 Score=61.52 Aligned_cols=58 Identities=45% Similarity=0.680 Sum_probs=48.6
Q ss_pred CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCcee
Q psy1420 42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQ 102 (241)
Q Consensus 42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (241)
+||++++-+....=++. ++..||++|+.+++|++|+++++++..|+||++|......+
T Consensus 205 KpGGrf~cLeFskv~~~---~l~~fy~~ysf~VlpvlG~~iagd~~sYqYLveSI~rfp~q 262 (296)
T KOG1540|consen 205 KPGGRFSCLEFSKVENE---PLKWFYDQYSFDVLPVLGEIIAGDRKSYQYLVESIRRFPPQ 262 (296)
T ss_pred CCCcEEEEEEccccccH---HHHHHHHhhhhhhhchhhHhhhhhHhhhhhHHhhhhcCCCH
Confidence 67888776666665555 68899999999999999999999999999999997765543
No 243
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=96.98 E-value=0.0075 Score=55.18 Aligned_cols=117 Identities=11% Similarity=0.149 Sum_probs=75.8
Q ss_pred CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCC
Q psy1420 42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP 121 (241)
Q Consensus 42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~ 121 (241)
.++.++||+||++|.++ ..++. .+..++++|..+- -... ..
T Consensus 210 ~~g~~vlDLGAsPGGWT-------------~~L~~-------------------rG~~V~AVD~g~l-~~~L---~~--- 250 (357)
T PRK11760 210 APGMRAVDLGAAPGGWT-------------YQLVR-------------------RGMFVTAVDNGPM-AQSL---MD--- 250 (357)
T ss_pred CCCCEEEEeCCCCcHHH-------------HHHHH-------------------cCCEEEEEechhc-CHhh---hC---
Confidence 68899999999999999 44444 4568999995542 1111 11
Q ss_pred CccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHHHHHHhccCC--c
Q psy1420 122 IESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPG--G 199 (241)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~Lkpg--G 199 (241)
.+++.....|......+...+|.++| .....|.+.++.+.+.+..| .
T Consensus 251 ---------------------------~~~V~h~~~d~fr~~p~~~~vDwvVc----Dmve~P~rva~lm~~Wl~~g~cr 299 (357)
T PRK11760 251 ---------------------------TGQVEHLRADGFKFRPPRKNVDWLVC----DMVEKPARVAELMAQWLVNGWCR 299 (357)
T ss_pred ---------------------------CCCEEEEeccCcccCCCCCCCCEEEE----ecccCHHHHHHHHHHHHhcCccc
Confidence 14677777776554322568999998 44567888999999988776 2
Q ss_pred EEEEE-ecCH-----------HHHHHHHHHCCCc-eEEEEEe
Q psy1420 200 RFLCL-EFSH-----------EEFKSMIESAGFQ-YVTYENL 228 (241)
Q Consensus 200 ~l~i~-~~~~-----------~~~~~~l~~~Gf~-~~~~~~~ 228 (241)
..++. -+.. +.+.+.+.++|.. ......+
T Consensus 300 ~aIfnLKlpmk~r~~~v~~~l~~i~~~l~~~g~~~~~~~khL 341 (357)
T PRK11760 300 EAIFNLKLPMKKRYEEVRQCLELIEEQLDENGINAQIQAKQL 341 (357)
T ss_pred EEEEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCccceeeeee
Confidence 33332 1211 4466777788863 2344444
No 244
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=96.96 E-value=0.00055 Score=56.30 Aligned_cols=72 Identities=22% Similarity=0.255 Sum_probs=50.8
Q ss_pred eEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCCccc
Q psy1420 46 KLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIESD 125 (241)
Q Consensus 46 ~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~ 125 (241)
.|+|+-||.|.++ ++++. ...+++++|+++..++.++.+++
T Consensus 2 ~vlD~fcG~GGNt-------------IqFA~-------------------~~~~Viaidid~~~~~~a~hNa~------- 42 (163)
T PF09445_consen 2 TVLDAFCGVGGNT-------------IQFAR-------------------TFDRVIAIDIDPERLECAKHNAE------- 42 (163)
T ss_dssp EEEETT-TTSHHH-------------HHHHH-------------------TT-EEEEEES-HHHHHHHHHHHH-------
T ss_pred EEEEeccCcCHHH-------------HHHHH-------------------hCCeEEEEECCHHHHHHHHHHHH-------
Confidence 6899999999999 77776 45689999999999999999988
Q ss_pred cccccceecceeeeeeccccCCCCCCeeEEecccCCCC--CCCCc-eeEEeee
Q psy1420 126 SYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELP--IESDS-YSAYTIA 175 (241)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~-~D~V~~~ 175 (241)
--|+. +++.++++|+.+.. ..... +|+|+++
T Consensus 43 ------------------vYGv~-~~I~~i~gD~~~~~~~~~~~~~~D~vFlS 76 (163)
T PF09445_consen 43 ------------------VYGVA-DNIDFICGDFFELLKRLKSNKIFDVVFLS 76 (163)
T ss_dssp ------------------HTT-G-GGEEEEES-HHHHGGGB------SEEEE-
T ss_pred ------------------HcCCC-CcEEEEeCCHHHHHhhccccccccEEEEC
Confidence 44544 57999999987652 11122 7999975
No 245
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=96.90 E-value=0.0036 Score=57.20 Aligned_cols=54 Identities=15% Similarity=0.173 Sum_probs=31.2
Q ss_pred EecccCCCCCCCCceeEEeeeehhhcccc---------------------------------------HHHHHHHHHHhc
Q psy1420 155 LEANAEELPIESDSYSAYTIAFGIRNVTR---------------------------------------IDKALSEAYRVL 195 (241)
Q Consensus 155 ~~~d~~~~~~~~~~~D~V~~~~~l~~~~~---------------------------------------~~~~l~~~~~~L 195 (241)
+.+.+..-=+|.++.|+++++.++||+.. ...+|+.=.+-|
T Consensus 94 vpgSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~EL 173 (334)
T PF03492_consen 94 VPGSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEEL 173 (334)
T ss_dssp EES-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHHE
T ss_pred cCchhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhhee
Confidence 45555554466788999999988887531 123444445578
Q ss_pred cCCcEEEEEecCH
Q psy1420 196 KPGGRFLCLEFSH 208 (241)
Q Consensus 196 kpgG~l~i~~~~~ 208 (241)
+|||++++.-.+.
T Consensus 174 v~GG~mvl~~~gr 186 (334)
T PF03492_consen 174 VPGGRMVLTFLGR 186 (334)
T ss_dssp EEEEEEEEEEEE-
T ss_pred ccCcEEEEEEeec
Confidence 9999999875433
No 246
>KOG1122|consensus
Probab=96.84 E-value=0.012 Score=55.02 Aligned_cols=130 Identities=17% Similarity=0.211 Sum_probs=87.0
Q ss_pred cCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHh
Q psy1420 39 LGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAE 118 (241)
Q Consensus 39 l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~ 118 (241)
+++.++.+|||..+.+|.-+ .+++. ++. ....+++.|.+...++....++.
T Consensus 237 L~Pq~gERIlDmcAAPGGKT-------------t~IAa----lMk------------n~G~I~AnD~n~~r~~~l~~n~~ 287 (460)
T KOG1122|consen 237 LDPQPGERILDMCAAPGGKT-------------THIAA----LMK------------NTGVIFANDSNENRLKSLKANLH 287 (460)
T ss_pred cCCCCCCeecchhcCCCchH-------------HHHHH----HHc------------CCceEEecccchHHHHHHHHHHH
Confidence 45789999999999998877 34433 222 35689999999999999999998
Q ss_pred cCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCC---CCCCceeEEe----eee--hhh------ccc-
Q psy1420 119 ELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELP---IESDSYSAYT----IAF--GIR------NVT- 182 (241)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~~D~V~----~~~--~l~------~~~- 182 (241)
+.|+. +..+...|..+.| ++. +||.|+ |+. ++. ...
T Consensus 288 -------------------------rlGv~--ntiv~n~D~~ef~~~~~~~-~fDRVLLDAPCSGtgvi~K~~~vkt~k~ 339 (460)
T KOG1122|consen 288 -------------------------RLGVT--NTIVSNYDGREFPEKEFPG-SFDRVLLDAPCSGTGVISKDQSVKTNKT 339 (460)
T ss_pred -------------------------HhCCC--ceEEEccCcccccccccCc-ccceeeecCCCCCCcccccccccccchh
Confidence 55554 4556666666554 223 799998 333 221 011
Q ss_pred --------c-HHHHHHHHHHhccCCcEEEEEecCH------HHHHHHHHHC-CCceEEE
Q psy1420 183 --------R-IDKALSEAYRVLKPGGRFLCLEFSH------EEFKSMIESA-GFQYVTY 225 (241)
Q Consensus 183 --------~-~~~~l~~~~~~LkpgG~l~i~~~~~------~~~~~~l~~~-Gf~~~~~ 225 (241)
. -.+.|..+..++++||+|+-++-+. .-+.-.|.+. .++++..
T Consensus 340 ~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~~~ENE~vV~yaL~K~p~~kL~p~ 398 (460)
T KOG1122|consen 340 VKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSITVEENEAVVDYALKKRPEVKLVPT 398 (460)
T ss_pred HHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecchhhhHHHHHHHHHhCCceEeccc
Confidence 1 1477788889999999999876555 3344455555 3444433
No 247
>KOG3201|consensus
Probab=96.80 E-value=0.0013 Score=53.97 Aligned_cols=110 Identities=15% Similarity=0.068 Sum_probs=74.0
Q ss_pred cCCCceeecCChHhHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCC--CCCCCceeEEe
Q psy1420 96 IRQFPNQIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL--PIESDSYSAYT 173 (241)
Q Consensus 96 ~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~D~V~ 173 (241)
+...+..+|-+...++..++..... ...+.. .+..+....... ..+..+||.|+
T Consensus 53 ~~~~v~ltdgne~svrnv~ki~~~n----------------------~~s~~t--sc~vlrw~~~~aqsq~eq~tFDiIl 108 (201)
T KOG3201|consen 53 PDSSVWLTDGNEESVRNVEKIRNSN----------------------MASSLT--SCCVLRWLIWGAQSQQEQHTFDIIL 108 (201)
T ss_pred CCceEEEecCCHHHHHHHHHHHhcc----------------------cccccc--eehhhHHHHhhhHHHHhhCcccEEE
Confidence 4668999999999998888766510 001111 222233332221 12345899999
Q ss_pred eeehhhccccHHHHHHHHHHhccCCcEEEEEecCH----HHHHHHHHHCCCceEEEEEec
Q psy1420 174 IAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH----EEFKSMIESAGFQYVTYENLT 229 (241)
Q Consensus 174 ~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~----~~~~~~l~~~Gf~~~~~~~~~ 229 (241)
|+-++-.-+.-+...+.+.++|+|.|.-++...-. +.+.+.....||.+.-.++..
T Consensus 109 aADClFfdE~h~sLvdtIk~lL~p~g~Al~fsPRRg~sL~kF~de~~~~gf~v~l~enyd 168 (201)
T KOG3201|consen 109 AADCLFFDEHHESLVDTIKSLLRPSGRALLFSPRRGQSLQKFLDEVGTVGFTVCLEENYD 168 (201)
T ss_pred eccchhHHHHHHHHHHHHHHHhCcccceeEecCcccchHHHHHHHHHhceeEEEecccHh
Confidence 99887665666788899999999999976655443 777788888999887666553
No 248
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=96.79 E-value=0.016 Score=49.81 Aligned_cols=128 Identities=14% Similarity=0.099 Sum_probs=88.3
Q ss_pred CCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCC
Q psy1420 43 HDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPI 122 (241)
Q Consensus 43 ~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~ 122 (241)
.+.++.|+||-.++.. ..++. .. .....++.|+++.-.+.+.+++.
T Consensus 16 ~~~~iaDIGsDHAYLp-------------~~Lv~-------~~----------~~~~~va~eV~~gpl~~a~~~v~---- 61 (226)
T COG2384 16 QGARIADIGSDHAYLP-------------IYLVK-------NN----------PASTAVAGEVVPGPLESAIRNVK---- 61 (226)
T ss_pred cCCceeeccCchhHhH-------------HHHHh-------cC----------CcceEEEeecccCHHHHHHHHHH----
Confidence 3445999999998877 33332 11 45689999999999999999998
Q ss_pred ccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHHHHHHhccCCcEEE
Q psy1420 123 ESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFL 202 (241)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~ 202 (241)
+.++. +++++..+|....=..++.+|.|+.+..= -.-+...|++-.+.|+.=-+++
T Consensus 62 ---------------------~~~l~-~~i~vr~~dgl~~l~~~d~~d~ivIAGMG--G~lI~~ILee~~~~l~~~~rlI 117 (226)
T COG2384 62 ---------------------KNNLS-ERIDVRLGDGLAVLELEDEIDVIVIAGMG--GTLIREILEEGKEKLKGVERLI 117 (226)
T ss_pred ---------------------hcCCc-ceEEEeccCCccccCccCCcCEEEEeCCc--HHHHHHHHHHhhhhhcCcceEE
Confidence 77776 78899999975432335578998765421 1233456666666665333454
Q ss_pred EEe-cCHHHHHHHHHHCCCceEEEEEe
Q psy1420 203 CLE-FSHEEFKSMIESAGFQYVTYENL 228 (241)
Q Consensus 203 i~~-~~~~~~~~~l~~~Gf~~~~~~~~ 228 (241)
+.- .....+++++...+|.+....-+
T Consensus 118 LQPn~~~~~LR~~L~~~~~~I~~E~il 144 (226)
T COG2384 118 LQPNIHTYELREWLSANSYEIKAETIL 144 (226)
T ss_pred ECCCCCHHHHHHHHHhCCceeeeeeee
Confidence 432 33389999999999998766544
No 249
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=96.76 E-value=0.012 Score=52.00 Aligned_cols=121 Identities=16% Similarity=0.166 Sum_probs=71.0
Q ss_pred CeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCCcc
Q psy1420 45 TKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIES 124 (241)
Q Consensus 45 ~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~ 124 (241)
..+||+|||-.+..|. .+++. .. .+..++.-+|..|..+..++..+.
T Consensus 70 rQFLDlGsGlPT~~nv-----------HevAq----~~------------~P~aRVVYVD~DPvv~ah~ralL~------ 116 (267)
T PF04672_consen 70 RQFLDLGSGLPTAGNV-----------HEVAQ----RV------------APDARVVYVDNDPVVLAHARALLA------ 116 (267)
T ss_dssp -EEEEET--S--SS-H-----------HHHHH----HH-------------TT-EEEEEESSHHHHHCCHHHHT------
T ss_pred ceEEEcccCCCCCCCH-----------hHHHH----hh------------CCCceEEEECCCchHHHHHHhhhc------
Confidence 4699999998754421 23322 11 157899999999999999988876
Q ss_pred ccccccceecceeeeeeccccCCCCCCeeEEecccCCCC------CCCCcee-----EEeeeehhhcccc---HHHHHHH
Q psy1420 125 DSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELP------IESDSYS-----AYTIAFGIRNVTR---IDKALSE 190 (241)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~------~~~~~~D-----~V~~~~~l~~~~~---~~~~l~~ 190 (241)
.. +.++..++.+|+.+.. ...+-+| .++...++|+++| +...++.
T Consensus 117 -------------------~~--~~g~t~~v~aD~r~p~~iL~~p~~~~~lD~~rPVavll~~vLh~v~D~~dp~~iv~~ 175 (267)
T PF04672_consen 117 -------------------DN--PRGRTAYVQADLRDPEAILAHPEVRGLLDFDRPVAVLLVAVLHFVPDDDDPAGIVAR 175 (267)
T ss_dssp -------------------T---TTSEEEEEE--TT-HHHHHCSHHHHCC--TTS--EEEECT-GGGS-CGCTHHHHHHH
T ss_pred -------------------CC--CCccEEEEeCCCCCHHHHhcCHHHHhcCCCCCCeeeeeeeeeccCCCccCHHHHHHH
Confidence 11 1123788999987752 0012233 4667788888754 7899999
Q ss_pred HHHhccCCcEEEEEecCH-------HHHHHHHHHCC
Q psy1420 191 AYRVLKPGGRFLCLEFSH-------EEFKSMIESAG 219 (241)
Q Consensus 191 ~~~~LkpgG~l~i~~~~~-------~~~~~~l~~~G 219 (241)
+...|.||.+|.++.... +.+...+++.|
T Consensus 176 l~d~lapGS~L~ish~t~d~~p~~~~~~~~~~~~~~ 211 (267)
T PF04672_consen 176 LRDALAPGSYLAISHATDDGAPERAEALEAVYAQAG 211 (267)
T ss_dssp HHCCS-TT-EEEEEEEB-TTSHHHHHHHHHHHHHCC
T ss_pred HHHhCCCCceEEEEecCCCCCHHHHHHHHHHHHcCC
Confidence 999999999999976554 44556666554
No 250
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=96.72 E-value=0.037 Score=49.71 Aligned_cols=60 Identities=12% Similarity=0.073 Sum_probs=48.2
Q ss_pred HHHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHh
Q psy1420 30 LWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPR 109 (241)
Q Consensus 30 ~~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~ 109 (241)
.+.+..++.+.+++++..+|+=-|.|..+ ..++..++ ....++++|.++.+
T Consensus 10 VLl~E~i~~L~~~~~giyiD~TlG~GGHS-------------~~iL~~l~----------------~~~~li~~DrD~~A 60 (314)
T COG0275 10 VLLNEVVELLAPKPDGIYIDGTLGAGGHS-------------RAILEKLP----------------DLGRLIGIDRDPQA 60 (314)
T ss_pred hHHHHHHHhcccCCCcEEEEecCCCcHhH-------------HHHHHhCC----------------CCCeEEEEcCCHHH
Confidence 45677788889999999999999999988 44444111 35679999999999
Q ss_pred HHHHHHHHh
Q psy1420 110 LRFLEANAE 118 (241)
Q Consensus 110 ~~~~~~~~~ 118 (241)
++.+++...
T Consensus 61 i~~a~~~l~ 69 (314)
T COG0275 61 IAIAKERLK 69 (314)
T ss_pred HHHHHHHhh
Confidence 999998875
No 251
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.63 E-value=0.0013 Score=53.70 Aligned_cols=55 Identities=24% Similarity=0.311 Sum_probs=45.2
Q ss_pred CeeEEecccCCCCCCCCceeEEeeeehhhccc--cHHHHHHHHHHhccCCcEEEEEe
Q psy1420 151 RLRFLEANAEELPIESDSYSAYTIAFGIRNVT--RIDKALSEAYRVLKPGGRFLCLE 205 (241)
Q Consensus 151 ~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~i~~ 205 (241)
.+++++-...+.++.+++.|+|.+..++.|+. .-..+++++++.|||||+|-|..
T Consensus 30 ~vdlvc~As~e~~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAv 86 (185)
T COG4627 30 EVDLVCRASNESMFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAV 86 (185)
T ss_pred ccchhhhhhhhccCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEc
Confidence 35566555666788899999999999998865 44689999999999999999865
No 252
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=96.61 E-value=0.01 Score=50.22 Aligned_cols=105 Identities=16% Similarity=0.125 Sum_probs=74.9
Q ss_pred CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCC
Q psy1420 42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP 121 (241)
Q Consensus 42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~ 121 (241)
-.+.+|||+|+|+|..+ +.... + ....+...|+.+.....+.-++.
T Consensus 78 VrgkrVLd~gagsgLva-------------IAaa~------a------------GA~~v~a~d~~P~~~~ai~lNa~--- 123 (218)
T COG3897 78 VRGKRVLDLGAGSGLVA-------------IAAAR------A------------GAAEVVAADIDPWLEQAIRLNAA--- 123 (218)
T ss_pred cccceeeecccccChHH-------------HHHHH------h------------hhHHHHhcCCChHHHHHhhcchh---
Confidence 56789999999999877 32222 1 34578899999999988888877
Q ss_pred CccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHHHHHHhccCCcEE
Q psy1420 122 IESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRF 201 (241)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l 201 (241)
..++. +.+...|.-. .+..+|+++.+-.+.+-+.-.+.+....++...|-.+
T Consensus 124 ----------------------angv~---i~~~~~d~~g---~~~~~Dl~LagDlfy~~~~a~~l~~~~~~l~~~g~~v 175 (218)
T COG3897 124 ----------------------ANGVS---ILFTHADLIG---SPPAFDLLLAGDLFYNHTEADRLIPWKDRLAEAGAAV 175 (218)
T ss_pred ----------------------hccce---eEEeeccccC---CCcceeEEEeeceecCchHHHHHHHHHHHHHhCCCEE
Confidence 55544 6777777665 2457999999988887777778888544555555566
Q ss_pred EEEecCH
Q psy1420 202 LCLEFSH 208 (241)
Q Consensus 202 ~i~~~~~ 208 (241)
++.+...
T Consensus 176 lvgdp~R 182 (218)
T COG3897 176 LVGDPGR 182 (218)
T ss_pred EEeCCCC
Confidence 6666554
No 253
>KOG2352|consensus
Probab=96.55 E-value=0.042 Score=52.23 Aligned_cols=103 Identities=18% Similarity=0.332 Sum_probs=78.4
Q ss_pred CeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCCcc
Q psy1420 45 TKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIES 124 (241)
Q Consensus 45 ~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~ 124 (241)
.+++.+|||.-..+ ..+.. .....++.+|+|+..++.....-.
T Consensus 50 ~~~l~lGCGNS~l~-------------e~ly~------------------~G~~dI~~iD~S~V~V~~m~~~~~------ 92 (482)
T KOG2352|consen 50 FKILQLGCGNSELS-------------EHLYK------------------NGFEDITNIDSSSVVVAAMQVRNA------ 92 (482)
T ss_pred ceeEeecCCCCHHH-------------HHHHh------------------cCCCCceeccccHHHHHHHHhccc------
Confidence 48999999997666 33322 145789999999999888765432
Q ss_pred ccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccc----------cHHHHHHHHHHh
Q psy1420 125 DSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVT----------RIDKALSEAYRV 194 (241)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~----------~~~~~l~~~~~~ 194 (241)
...+...+...|...+.+++++||+|+.-..++++- ....-+.+++|+
T Consensus 93 ----------------------~~~~~~~~~~~d~~~l~fedESFdiVIdkGtlDal~~de~a~~~~~~v~~~~~eVsrv 150 (482)
T KOG2352|consen 93 ----------------------KERPEMQMVEMDMDQLVFEDESFDIVIDKGTLDALFEDEDALLNTAHVSNMLDEVSRV 150 (482)
T ss_pred ----------------------cCCcceEEEEecchhccCCCcceeEEEecCccccccCCchhhhhhHHhhHHHhhHHHH
Confidence 112468899999999999999999999888776532 234667899999
Q ss_pred ccCCcEEEEEec
Q psy1420 195 LKPGGRFLCLEF 206 (241)
Q Consensus 195 LkpgG~l~i~~~ 206 (241)
++|||+.+.+..
T Consensus 151 l~~~gk~~svtl 162 (482)
T KOG2352|consen 151 LAPGGKYISVTL 162 (482)
T ss_pred hccCCEEEEEEe
Confidence 999999877665
No 254
>KOG4589|consensus
Probab=96.52 E-value=0.019 Score=48.34 Aligned_cols=17 Identities=12% Similarity=0.286 Sum_probs=16.1
Q ss_pred CCCCeEEEEecCCCcch
Q psy1420 42 THDTKLLDVAGGTDPLA 58 (241)
Q Consensus 42 ~~~~~vLdvG~G~G~~~ 58 (241)
+|+.+|||+||.+|.|+
T Consensus 68 ~p~~~VlD~G~APGsWs 84 (232)
T KOG4589|consen 68 RPEDTVLDCGAAPGSWS 84 (232)
T ss_pred CCCCEEEEccCCCChHH
Confidence 68999999999999999
No 255
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=96.43 E-value=0.001 Score=49.86 Aligned_cols=55 Identities=16% Similarity=0.297 Sum_probs=35.8
Q ss_pred CCeeEEecccCCC--CCCCCceeEEeeeehhhccccHHHHHHHHHHhccCCcEEEEEe
Q psy1420 150 PRLRFLEANAEEL--PIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 205 (241)
Q Consensus 150 ~~~~~~~~d~~~~--~~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 205 (241)
.++++++++..+. ..+.+++|+++.-. -|..+.....+..+.+.|+|||.+++=+
T Consensus 49 ~~~~~~~g~s~~~l~~~~~~~~dli~iDg-~H~~~~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 49 DRVEFIQGDSPDFLPSLPDGPIDLIFIDG-DHSYEAVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp BTEEEEES-THHHHHHHHH--EEEEEEES----HHHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred CeEEEEEcCcHHHHHHcCCCCEEEEEECC-CCCHHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 4688888887643 12246899998654 2334566778899999999999988743
No 256
>KOG2730|consensus
Probab=96.38 E-value=0.0022 Score=55.13 Aligned_cols=75 Identities=19% Similarity=0.244 Sum_probs=58.4
Q ss_pred CCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCCc
Q psy1420 44 DTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIE 123 (241)
Q Consensus 44 ~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~ 123 (241)
..+|+|.-||.|.++ .+.+. ....++++|++|.-+..++.+++
T Consensus 95 ~~~iidaf~g~gGnt-------------iqfa~-------------------~~~~VisIdiDPikIa~AkhNae----- 137 (263)
T KOG2730|consen 95 AEVIVDAFCGVGGNT-------------IQFAL-------------------QGPYVIAIDIDPVKIACARHNAE----- 137 (263)
T ss_pred cchhhhhhhcCCchH-------------HHHHH-------------------hCCeEEEEeccHHHHHHHhccce-----
Confidence 347899999888888 66655 57789999999999999999988
Q ss_pred cccccccceecceeeeeeccccCCCCCCeeEEecccCCC----CCCCCceeEEeeee
Q psy1420 124 SDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL----PIESDSYSAYTIAF 176 (241)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~----~~~~~~~D~V~~~~ 176 (241)
-=|++ .+++|+++|+..+ ....+.+|+|+.+-
T Consensus 138 --------------------iYGI~-~rItFI~GD~ld~~~~lq~~K~~~~~vf~sp 173 (263)
T KOG2730|consen 138 --------------------VYGVP-DRITFICGDFLDLASKLKADKIKYDCVFLSP 173 (263)
T ss_pred --------------------eecCC-ceeEEEechHHHHHHHHhhhhheeeeeecCC
Confidence 66888 4999999997765 23445577777543
No 257
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.36 E-value=0.039 Score=50.68 Aligned_cols=43 Identities=19% Similarity=0.334 Sum_probs=29.1
Q ss_pred CCceeEEeeeehhhcc---ccHHHHHHHHHHhccCCcEEEEEecCH
Q psy1420 166 SDSYSAYTIAFGIRNV---TRIDKALSEAYRVLKPGGRFLCLEFSH 208 (241)
Q Consensus 166 ~~~~D~V~~~~~l~~~---~~~~~~l~~~~~~LkpgG~l~i~~~~~ 208 (241)
.+.|++++...-|-.. ..+...++.+-.++.|||.|++++-+.
T Consensus 183 ad~ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGt 228 (484)
T COG5459 183 ADLYTLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGT 228 (484)
T ss_pred cceeehhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCC
Confidence 3566666554333222 223457888888999999999998776
No 258
>KOG1709|consensus
Probab=96.33 E-value=0.022 Score=49.05 Aligned_cols=104 Identities=15% Similarity=0.132 Sum_probs=70.6
Q ss_pred CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCC
Q psy1420 42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP 121 (241)
Q Consensus 42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~ 121 (241)
.+|++||+||.|-|-.. ..+ . +.......-++..|...+..+...-
T Consensus 100 tkggrvLnVGFGMgIid-------------T~i--------Q----------e~~p~~H~IiE~hp~V~krmr~~gw--- 145 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIID-------------TFI--------Q----------EAPPDEHWIIEAHPDVLKRMRDWGW--- 145 (271)
T ss_pred hCCceEEEeccchHHHH-------------HHH--------h----------hcCCcceEEEecCHHHHHHHHhccc---
Confidence 57889999999998765 111 1 1134566788999998888776533
Q ss_pred CccccccccceecceeeeeeccccCCCCCCeeEEecccCCC--CCCCCceeEEeeeehhhccccHHHHHHHHHHhccCCc
Q psy1420 122 IESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL--PIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGG 199 (241)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG 199 (241)
.-. .++.++.+-.+.. .++++.||=|+.----.+-++...+.+.+.|+|||+|
T Consensus 146 ------------------------~ek-~nViil~g~WeDvl~~L~d~~FDGI~yDTy~e~yEdl~~~hqh~~rLLkP~g 200 (271)
T KOG1709|consen 146 ------------------------REK-ENVIILEGRWEDVLNTLPDKHFDGIYYDTYSELYEDLRHFHQHVVRLLKPEG 200 (271)
T ss_pred ------------------------ccc-cceEEEecchHhhhccccccCcceeEeechhhHHHHHHHHHHHHhhhcCCCc
Confidence 111 3566777665543 2557789998854333445666777789999999999
Q ss_pred EEEEE
Q psy1420 200 RFLCL 204 (241)
Q Consensus 200 ~l~i~ 204 (241)
++-..
T Consensus 201 v~Syf 205 (271)
T KOG1709|consen 201 VFSYF 205 (271)
T ss_pred eEEEe
Confidence 98653
No 259
>KOG2187|consensus
Probab=96.15 E-value=0.011 Score=56.47 Aligned_cols=75 Identities=23% Similarity=0.248 Sum_probs=59.9
Q ss_pred HHHHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChH
Q psy1420 29 RLWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNP 108 (241)
Q Consensus 29 ~~~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~ 108 (241)
..+...+.+++....+..++|+-||||... ..+.. ....++|+++++.
T Consensus 369 evLys~i~e~~~l~~~k~llDv~CGTG~ig-------------lala~-------------------~~~~ViGvEi~~~ 416 (534)
T KOG2187|consen 369 EVLYSTIGEWAGLPADKTLLDVCCGTGTIG-------------LALAR-------------------GVKRVIGVEISPD 416 (534)
T ss_pred HHHHHHHHHHhCCCCCcEEEEEeecCCcee-------------hhhhc-------------------cccceeeeecChh
Confidence 345667777778788889999999999988 43333 5778999999999
Q ss_pred hHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCC
Q psy1420 109 RLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL 162 (241)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 162 (241)
.++.|+.++. .+++. +.+|+++-++.+
T Consensus 417 aV~dA~~nA~-------------------------~Ngis--Na~Fi~gqaE~~ 443 (534)
T KOG2187|consen 417 AVEDAEKNAQ-------------------------INGIS--NATFIVGQAEDL 443 (534)
T ss_pred hcchhhhcch-------------------------hcCcc--ceeeeecchhhc
Confidence 9999999998 67776 788888855543
No 260
>KOG1562|consensus
Probab=96.01 E-value=0.043 Score=49.19 Aligned_cols=144 Identities=11% Similarity=0.069 Sum_probs=93.2
Q ss_pred CCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCC
Q psy1420 43 HDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPI 122 (241)
Q Consensus 43 ~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~ 122 (241)
...++|-+|.|.|... +..+. ++....+...|+....++..++-..++
T Consensus 121 npkkvlVVgggDggvl-------------revik-----------------H~~ve~i~~~eiD~~Vie~sk~y~p~l-- 168 (337)
T KOG1562|consen 121 NPKKVLVVGGGDGGVL-------------REVIK-----------------HKSVENILLCEIDENVIESSKQYLPTL-- 168 (337)
T ss_pred CCCeEEEEecCCccce-------------eeeec-----------------cccccceeeehhhHHHHHHHHHHhHHH--
Confidence 3458999999999877 44443 124567888899888888877765533
Q ss_pred ccccccccceecceeeeeeccccCCCCCCeeEEecccCCC--CCCCCceeEEeeeehhhcccc----HHHHHHHHHHhcc
Q psy1420 123 ESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL--PIESDSYSAYTIAFGIRNVTR----IDKALSEAYRVLK 196 (241)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~D~V~~~~~l~~~~~----~~~~l~~~~~~Lk 196 (241)
..+...+++.++.+|...+ ....++||+|+.-..=--.+. .+..+..+.+.||
T Consensus 169 ---------------------a~gy~~~~v~l~iGDG~~fl~~~~~~~~dVii~dssdpvgpa~~lf~~~~~~~v~~aLk 227 (337)
T KOG1562|consen 169 ---------------------ACGYEGKKVKLLIGDGFLFLEDLKENPFDVIITDSSDPVGPACALFQKPYFGLVLDALK 227 (337)
T ss_pred ---------------------hcccCCCceEEEeccHHHHHHHhccCCceEEEEecCCccchHHHHHHHHHHHHHHHhhC
Confidence 3345556788888875443 133678999985321111111 2467788899999
Q ss_pred CCcEEEEEecCH-------HHHH----HHHHHCCCceEEEEEecCceeEEEeee
Q psy1420 197 PGGRFLCLEFSH-------EEFK----SMIESAGFQYVTYENLTFGVVAIHSGF 239 (241)
Q Consensus 197 pgG~l~i~~~~~-------~~~~----~~l~~~Gf~~~~~~~~~~~~~~~~~~~ 239 (241)
+||+++...-+- ++.+ .++....+.+.++-++.+|..+.....
T Consensus 228 ~dgv~~~q~ec~wl~~~~i~e~r~~~~~~f~~t~ya~ttvPTypsg~igf~l~s 281 (337)
T KOG1562|consen 228 GDGVVCTQGECMWLHLDYIKEGRSFCYVIFDLTAYAITTVPTYPSGRIGFMLCS 281 (337)
T ss_pred CCcEEEEecceehHHHHHHHHHHHhHHHhcCccceeeecCCCCccceEEEEEec
Confidence 999998764222 2222 223334456666677788888887765
No 261
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=95.67 E-value=0.023 Score=45.10 Aligned_cols=52 Identities=15% Similarity=0.134 Sum_probs=38.1
Q ss_pred CCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHh
Q psy1420 41 PTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAE 118 (241)
Q Consensus 41 ~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~ 118 (241)
..+...|+|+|||.|+++ ..+.. ++... .....+.++|.++...+.+.+...
T Consensus 23 ~~~~~~vvD~GsG~GyLs-------------~~La~----~l~~~---------~~~~~v~~iD~~~~~~~~a~~~~~ 74 (141)
T PF13679_consen 23 SKRCITVVDLGSGKGYLS-------------RALAH----LLCNS---------SPNLRVLGIDCNESLVESAQKRAQ 74 (141)
T ss_pred cCCCCEEEEeCCChhHHH-------------HHHHH----HHHhc---------CCCCeEEEEECCcHHHHHHHHHHH
Confidence 366779999999999999 22222 11111 146789999999999999988877
No 262
>KOG2198|consensus
Probab=95.52 E-value=0.36 Score=44.51 Aligned_cols=137 Identities=19% Similarity=0.254 Sum_probs=79.4
Q ss_pred cCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHh
Q psy1420 39 LGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAE 118 (241)
Q Consensus 39 l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~ 118 (241)
++.+|+.+|||..+.+|.-+ .+++..+. ..+ ....+.+-|.++...........
T Consensus 151 L~v~p~~~VLDmCAAPG~Kt-------------~qLLeal~----~~~---------~~g~vvaND~d~~R~~~L~~q~~ 204 (375)
T KOG2198|consen 151 LGVKPGDKVLDMCAAPGGKT-------------AQLLEALH----KDP---------TRGYVVANDVDPKRLNMLVHQLK 204 (375)
T ss_pred cccCCCCeeeeeccCCCccH-------------HHHHHHHh----cCC---------CCCeeEecccCHHHHHHHHHHHh
Confidence 34589999999999999988 56665221 111 14578999999998888887776
Q ss_pred cCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeee------hhhccc----------
Q psy1420 119 ELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAF------GIRNVT---------- 182 (241)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~------~l~~~~---------- 182 (241)
.+|.+ +-+..-++.. ..+ ++.+..++ +.....||.|+|-- .++.-+
T Consensus 205 ~l~~~----------~~~v~~~~~~--~~p--~~~~~~~~----~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~ 266 (375)
T KOG2198|consen 205 RLPSP----------NLLVTNHDAS--LFP--NIYLKDGN----DKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQ 266 (375)
T ss_pred ccCCc----------ceeeecccce--ecc--ccccccCc----hhhhhhcceeEEecccCCCcccccCchHhhhhhhhh
Confidence 33221 0011111000 000 11111111 22345788887531 111111
Q ss_pred ------c-HHHHHHHHHHhccCCcEEEEEecCH------HHHHHHHHHCC
Q psy1420 183 ------R-IDKALSEAYRVLKPGGRFLCLEFSH------EEFKSMIESAG 219 (241)
Q Consensus 183 ------~-~~~~l~~~~~~LkpgG~l~i~~~~~------~~~~~~l~~~G 219 (241)
. --.+|.+..++||+||+++-++-+- .-+..+++..|
T Consensus 267 ~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLnpieNEaVV~~~L~~~~ 316 (375)
T KOG2198|consen 267 RALGLHALQLRILRRGLRLLKVGGRLVYSTCSLNPIENEAVVQEALQKVG 316 (375)
T ss_pred hccCChHHHHHHHHHHHHHhcCCCEEEEeccCCCchhhHHHHHHHHHHhc
Confidence 1 1367888899999999999876554 55567777766
No 263
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=95.45 E-value=0.064 Score=53.18 Aligned_cols=73 Identities=19% Similarity=0.315 Sum_probs=49.7
Q ss_pred CeeEEecccCCC-CCCCCceeEEeee-ehhhccccH--HHHHHHHHHhccCCcEEEEEecCH-HHHHHHHHHCCCceEEE
Q psy1420 151 RLRFLEANAEEL-PIESDSYSAYTIA-FGIRNVTRI--DKALSEAYRVLKPGGRFLCLEFSH-EEFKSMIESAGFQYVTY 225 (241)
Q Consensus 151 ~~~~~~~d~~~~-~~~~~~~D~V~~~-~~l~~~~~~--~~~l~~~~~~LkpgG~l~i~~~~~-~~~~~~l~~~Gf~~~~~ 225 (241)
.+++..+|+.+. +.-...+|+++.- |+-..-+++ ..+++.+.++++|||.+. +++. ..++..|.++||.+.+.
T Consensus 148 ~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~--t~t~a~~vr~~l~~~GF~v~~~ 225 (662)
T PRK01747 148 TLDLWFGDANELLPQLDARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLA--TFTSAGFVRRGLQEAGFTVRKV 225 (662)
T ss_pred EEEEEecCHHHHHHhccccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEE--EeehHHHHHHHHHHcCCeeeec
Confidence 356777887642 2112468998853 222111222 589999999999999987 4444 88999999999987654
No 264
>PRK05785 hypothetical protein; Provisional
Probab=95.43 E-value=0.012 Score=50.55 Aligned_cols=87 Identities=8% Similarity=0.085 Sum_probs=63.7
Q ss_pred CCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCC
Q psy1420 43 HDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPI 122 (241)
Q Consensus 43 ~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~ 122 (241)
|..-++|++. .... +.+.+|..|+..++|.+|.++.++..+|.||.+|.......-+..+.+.+.+ ..+
T Consensus 139 p~~~ile~~~--p~~~---~~~~~~~~y~~~~~P~~~~~~~~~~~~Y~yl~~si~~f~~~~~~~~~~~~~~-~~~----- 207 (226)
T PRK05785 139 KQVGFIAMGK--PDNV---IKRKYLSFYLRYIMPYIACLAGAKCRDYKYIYYIYERLPTNSFHREIFEKYA-DIK----- 207 (226)
T ss_pred CceEEEEeCC--CCcH---HHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCHHHHHHHHHHHh-Cce-----
Confidence 3444788753 2222 6799999999999999999999999999999999777666555444444332 223
Q ss_pred ccccccccceecceeeeeecccc
Q psy1420 123 ESDSYSAYTIAFGIRNVTRIDKI 145 (241)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~ 145 (241)
++++..+|+..++...|.
T Consensus 208 -----~~~~~~~G~~~~~~~~k~ 225 (226)
T PRK05785 208 -----VYEERGLGLVYFVVGSSR 225 (226)
T ss_pred -----EEEEccccEEEEEEEeeC
Confidence 478888899888877663
No 265
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=95.35 E-value=0.051 Score=49.08 Aligned_cols=59 Identities=14% Similarity=0.085 Sum_probs=46.6
Q ss_pred HHHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHh
Q psy1420 30 LWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPR 109 (241)
Q Consensus 30 ~~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~ 109 (241)
.+.+.+++.+.+++++.++|+=+|.|..+ ..++..+ ....++++|.++.+
T Consensus 7 Vll~Evl~~L~~~~ggiyVD~TlG~GGHS-------------~~iL~~l-----------------~~g~vigiD~D~~A 56 (305)
T TIGR00006 7 VLLDEVVEGLNIKPDGIYIDCTLGFGGHS-------------KAILEQL-----------------GTGRLIGIDRDPQA 56 (305)
T ss_pred hhHHHHHHhcCcCCCCEEEEeCCCChHHH-------------HHHHHhC-----------------CCCEEEEEcCCHHH
Confidence 34567778888888899999999999998 4444411 13689999999999
Q ss_pred HHHHHHHHh
Q psy1420 110 LRFLEANAE 118 (241)
Q Consensus 110 ~~~~~~~~~ 118 (241)
++.+++...
T Consensus 57 l~~ak~~L~ 65 (305)
T TIGR00006 57 IAFAKERLS 65 (305)
T ss_pred HHHHHHHHh
Confidence 999988776
No 266
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=95.30 E-value=0.097 Score=47.13 Aligned_cols=81 Identities=14% Similarity=0.201 Sum_probs=44.2
Q ss_pred CCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCCc
Q psy1420 44 DTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIE 123 (241)
Q Consensus 44 ~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~ 123 (241)
..++||||+|... +.|.+|... .+-..+|+|+++..++.|+++++
T Consensus 103 ~v~glDIGTGAsc-----------------IYpLLg~~~-------------~~W~fvaTdID~~sl~~A~~nv~----- 147 (299)
T PF05971_consen 103 KVRGLDIGTGASC-----------------IYPLLGAKL-------------YGWSFVATDIDPKSLESARENVE----- 147 (299)
T ss_dssp --EEEEES-TTTT-----------------HHHHHHHHH-------------H--EEEEEES-HHHHHHHHHHHH-----
T ss_pred ceEeecCCccHHH-----------------HHHHHhhhh-------------cCCeEEEecCCHHHHHHHHHHHH-----
Confidence 4579999888743 346555322 24479999999999999999998
Q ss_pred cccccccceecceeeeeecccc-CCCCCCeeEEecccCC-----CCCCCCceeEEeeeehhhc
Q psy1420 124 SDSYSAYTIAFGIRNVTRIDKI-DIPNPRLRFLEANAEE-----LPIESDSYSAYTIAFGIRN 180 (241)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~d~~~-----~~~~~~~~D~V~~~~~l~~ 180 (241)
+. ++. .+++++...-.. +..+.+.||..+|+--++.
T Consensus 148 --------------------~N~~L~-~~I~l~~~~~~~~i~~~i~~~~e~~dftmCNPPFy~ 189 (299)
T PF05971_consen 148 --------------------RNPNLE-SRIELRKQKNPDNIFDGIIQPNERFDFTMCNPPFYS 189 (299)
T ss_dssp --------------------HT-T-T-TTEEEEE--ST-SSTTTSTT--S-EEEEEE-----S
T ss_pred --------------------hccccc-cceEEEEcCCccccchhhhcccceeeEEecCCcccc
Confidence 44 554 567666543221 1123468999998765553
No 267
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=95.11 E-value=0.45 Score=45.77 Aligned_cols=88 Identities=15% Similarity=0.226 Sum_probs=56.9
Q ss_pred hHHHHHhhhhhccccchhh--hhhhhHHHHHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhh
Q psy1420 4 PMYEVFENVAKSYDTMNDA--MSFGIHRLWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQL 81 (241)
Q Consensus 4 ~~~~~f~~~~~~yd~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (241)
.+..+|+.+...|+..... -.+.-.+...+.+.+.+.+.+..+|+|..||+|.+. .+....++
T Consensus 145 ~~G~~yE~ll~~fa~~~~k~~GEfyTP~~v~~liv~~l~~~~~~~i~DpacGsgg~l-------------~~a~~~~~-- 209 (489)
T COG0286 145 LFGDAYEYLLRKFAEAEGKEAGEFYTPREVSELIVELLDPEPRNSIYDPACGSGGML-------------LQAAKYLK-- 209 (489)
T ss_pred chhHHHHHHHHHHHHhcCCCCCccCChHHHHHHHHHHcCCCCCCeecCCCCchhHHH-------------HHHHHHHH--
Confidence 3455566666655553211 112223445677777777777779999999999876 44444222
Q ss_pred hhcCCCcchhhhccc-CCCceeecCChHhHHHHHHHHh
Q psy1420 82 IAGQWKPYQYLVESI-RQFPNQIDIPNPRLRFLEANAE 118 (241)
Q Consensus 82 ~~~~~~~~~~~~~~~-~~~~~~~D~s~~~~~~~~~~~~ 118 (241)
. +. ...++|.|.++.....++.+.-
T Consensus 210 --~----------~~~~~~~yGqE~~~~t~~l~~mN~~ 235 (489)
T COG0286 210 --R----------HQDEIFIYGQEINDTTYRLAKMNLI 235 (489)
T ss_pred --h----------hccceeEEEEeCCHHHHHHHHHHHH
Confidence 1 12 3679999999999999988876
No 268
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=94.97 E-value=0.16 Score=48.57 Aligned_cols=75 Identities=19% Similarity=0.192 Sum_probs=56.0
Q ss_pred CCceeEEeeeehhhccc---cHHHHHHHHHHhccCCcEEEEEecCH--HHHHHHHHHCCCceEEEEEec--CceeEEEee
Q psy1420 166 SDSYSAYTIAFGIRNVT---RIDKALSEAYRVLKPGGRFLCLEFSH--EEFKSMIESAGFQYVTYENLT--FGVVAIHSG 238 (241)
Q Consensus 166 ~~~~D~V~~~~~l~~~~---~~~~~l~~~~~~LkpgG~l~i~~~~~--~~~~~~l~~~Gf~~~~~~~~~--~~~~~~~~~ 238 (241)
+.+||+|.+...+.... +.+..|-++-|+|+|||.+++-+... .+++.++.+...+........ .+--.+.++
T Consensus 425 PRTYDLlHA~~lfs~~~~rC~~~~illEmDRILRP~G~~iiRD~~~vl~~v~~i~~~lrW~~~~~d~e~g~~~~EkiL~~ 504 (506)
T PF03141_consen 425 PRTYDLLHADGLFSLYKDRCEMEDILLEMDRILRPGGWVIIRDTVDVLEKVKKIAKSLRWEVRIHDTEDGPDGPEKILIC 504 (506)
T ss_pred CcchhheehhhhhhhhcccccHHHHHHHhHhhcCCCceEEEeccHHHHHHHHHHHHhCcceEEEEecCCCCCCCceEEEE
Confidence 57899999887776543 56799999999999999999987666 888888888887654443332 344556555
Q ss_pred ec
Q psy1420 239 FK 240 (241)
Q Consensus 239 ~~ 240 (241)
.|
T Consensus 505 ~K 506 (506)
T PF03141_consen 505 QK 506 (506)
T ss_pred EC
Confidence 54
No 269
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=94.96 E-value=1.4 Score=38.43 Aligned_cols=103 Identities=17% Similarity=0.204 Sum_probs=61.9
Q ss_pred CCCceeecCChHhHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCC-CCC-CCceeEEee
Q psy1420 97 RQFPNQIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL-PIE-SDSYSAYTI 174 (241)
Q Consensus 97 ~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~-~~~~D~V~~ 174 (241)
..+++.+|+++..++...+.+. +.+++ ++....|+... |.+ .++||++++
T Consensus 67 ~~~I~VvDiDeRll~fI~~~a~-------------------------~~gl~---i~~~~~DlR~~LP~~~~~~fD~f~T 118 (243)
T PF01861_consen 67 PKRITVVDIDERLLDFINRVAE-------------------------EEGLP---IEAVHYDLRDPLPEELRGKFDVFFT 118 (243)
T ss_dssp -SEEEEE-S-HHHHHHHHHHHH-------------------------HHT-----EEEE---TTS---TTTSS-BSEEEE
T ss_pred CCeEEEEEcCHHHHHHHHHHHH-------------------------HcCCc---eEEEEecccccCCHHHhcCCCEEEe
Confidence 4579999999999999999988 66766 88888888764 322 579999986
Q ss_pred eehhhccccHHHHHHHHHHhccCCcEEEEEecCH--------HHHHHHHHHCCCceEEEEEe
Q psy1420 175 AFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH--------EEFKSMIESAGFQYVTYENL 228 (241)
Q Consensus 175 ~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~--------~~~~~~l~~~Gf~~~~~~~~ 228 (241)
.- -...+-..-++++....||..|-.....+++ .++++.+.+.||.+.++..-
T Consensus 119 DP-PyT~~G~~LFlsRgi~~Lk~~g~~gy~~~~~~~~s~~~~~~~Q~~l~~~gl~i~dii~~ 179 (243)
T PF01861_consen 119 DP-PYTPEGLKLFLSRGIEALKGEGCAGYFGFTHKEASPDKWLEVQRFLLEMGLVITDIIPD 179 (243)
T ss_dssp ----SSHHHHHHHHHHHHHTB-STT-EEEEEE-TTT--HHHHHHHHHHHHTS--EEEEEEEE
T ss_pred CC-CCCHHHHHHHHHHHHHHhCCCCceEEEEEecCcCcHHHHHHHHHHHHHCCcCHHHHHhh
Confidence 31 1122345678888899998766322223332 46788899999998877643
No 270
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=94.90 E-value=0.043 Score=42.16 Aligned_cols=59 Identities=19% Similarity=0.365 Sum_probs=37.9
Q ss_pred ceeEEeeeehhhcc--c----cHHHHHHHHHHhccCCcEEEEEecCH-------------------------HHHHHHHH
Q psy1420 168 SYSAYTIAFGIRNV--T----RIDKALSEAYRVLKPGGRFLCLEFSH-------------------------EEFKSMIE 216 (241)
Q Consensus 168 ~~D~V~~~~~l~~~--~----~~~~~l~~~~~~LkpgG~l~i~~~~~-------------------------~~~~~~l~ 216 (241)
.||+|+|-.+.-++ + -...+++.+++.|+|||+|++ +..+ +.+.+.|.
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lil-EpQ~w~sY~~~~~~~~~~~~n~~~i~lrP~~F~~~L~ 79 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILIL-EPQPWKSYKKAKRLSEEIRENYKSIKLRPDQFEDYLL 79 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEE-E---HHHHHTTTTS-HHHHHHHHH----GGGHHHHHT
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEE-eCCCcHHHHHHhhhhHHHHhHHhceEEChHHHHHHHH
Confidence 48999987765433 1 246899999999999999987 3222 66777777
Q ss_pred H--CCCceEEEEE
Q psy1420 217 S--AGFQYVTYEN 227 (241)
Q Consensus 217 ~--~Gf~~~~~~~ 227 (241)
+ .||..++...
T Consensus 80 ~~evGF~~~e~~~ 92 (110)
T PF06859_consen 80 EPEVGFSSVEELG 92 (110)
T ss_dssp STTT---EEEEE-
T ss_pred hcccceEEEEEcc
Confidence 7 5888766443
No 271
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=94.89 E-value=0.051 Score=42.52 Aligned_cols=43 Identities=12% Similarity=0.074 Sum_probs=33.0
Q ss_pred eEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHh
Q psy1420 46 KLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAE 118 (241)
Q Consensus 46 ~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~ 118 (241)
+++|+|||.|..+ ..++. . ....+++++|+++.+.+.+++++.
T Consensus 1 ~vlDiGa~~G~~~-------------~~~~~----~-------------~~~~~v~~~E~~~~~~~~l~~~~~ 43 (143)
T TIGR01444 1 VVIDVGANIGDTS-------------LYFAR----K-------------GAEGRVIAFEPLPDAYEILEENVK 43 (143)
T ss_pred CEEEccCCccHHH-------------HHHHH----h-------------CCCCEEEEEecCHHHHHHHHHHHH
Confidence 4899999999987 22222 0 023479999999999999998877
No 272
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=94.87 E-value=0.13 Score=45.07 Aligned_cols=120 Identities=15% Similarity=0.179 Sum_probs=70.0
Q ss_pred CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCC
Q psy1420 42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP 121 (241)
Q Consensus 42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~ 121 (241)
.+..+|+|+|||.-.++ +| ++.. .....|++.|++..+++.+.+-..
T Consensus 104 ~~p~sVlDigCGlNPla----------------lp----~~~~----------~~~a~Y~a~DID~~~ve~l~~~l~--- 150 (251)
T PF07091_consen 104 PPPDSVLDIGCGLNPLA----------------LP----WMPE----------APGATYIAYDIDSQLVEFLNAFLA--- 150 (251)
T ss_dssp ---SEEEEET-TTCHHH----------------HH----TTTS----------STT-EEEEEESBHHHHHHHHHHHH---
T ss_pred CCCchhhhhhccCCcee----------------hh----hccc----------CCCcEEEEEeCCHHHHHHHHHHHH---
Confidence 34679999999997666 33 1211 245689999999999999998877
Q ss_pred CccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHH--HHHHHHHHhccCCc
Q psy1420 122 IESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRID--KALSEAYRVLKPGG 199 (241)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~--~~l~~~~~~LkpgG 199 (241)
..+. +.++...|...-+ +....|+.+.--.++.+.... ..++-+..+ +.
T Consensus 151 ----------------------~l~~---~~~~~v~Dl~~~~-~~~~~DlaLllK~lp~le~q~~g~g~~ll~~~---~~ 201 (251)
T PF07091_consen 151 ----------------------VLGV---PHDARVRDLLSDP-PKEPADLALLLKTLPCLERQRRGAGLELLDAL---RS 201 (251)
T ss_dssp ----------------------HTT----CEEEEEE-TTTSH-TTSEESEEEEET-HHHHHHHSTTHHHHHHHHS---CE
T ss_pred ----------------------hhCC---CcceeEeeeeccC-CCCCcchhhHHHHHHHHHHHhcchHHHHHHHh---CC
Confidence 3333 3566666766653 356789998776666544322 222222222 23
Q ss_pred EEEEEecCH---------------HHHHHHHHHCCCceE
Q psy1420 200 RFLCLEFSH---------------EEFKSMIESAGFQYV 223 (241)
Q Consensus 200 ~l~i~~~~~---------------~~~~~~l~~~Gf~~~ 223 (241)
..++++|.. .+++..+...|..+.
T Consensus 202 ~~~vVSfPtrSL~gR~~gm~~~y~~~fe~~~~~~~~~~~ 240 (251)
T PF07091_consen 202 PHVVVSFPTRSLGGRNKGMEQTYSAWFEALAAERGWIVD 240 (251)
T ss_dssp SEEEEEEES-------TTHHHCHHHHHHHHCCTTCEEEE
T ss_pred CeEEEeccccccccCccccccCHHHHHHHhcccCCceee
Confidence 334434333 677777777777633
No 273
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=94.84 E-value=0.053 Score=45.80 Aligned_cols=97 Identities=11% Similarity=0.107 Sum_probs=69.3
Q ss_pred CeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCCcc
Q psy1420 45 TKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIES 124 (241)
Q Consensus 45 ~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~ 124 (241)
+.+.|+|+|+|-++ . ++.. ...++++++.+|...+.+.+++.
T Consensus 34 d~~~DLGaGsGiLs-------------~---------~Aa~----------~A~rViAiE~dPk~a~~a~eN~~------ 75 (252)
T COG4076 34 DTFADLGAGSGILS-------------V---------VAAH----------AAERVIAIEKDPKRARLAEENLH------ 75 (252)
T ss_pred hceeeccCCcchHH-------------H---------HHHh----------hhceEEEEecCcHHHHHhhhcCC------
Confidence 58999999999988 1 2211 34579999999999888888765
Q ss_pred ccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhh--ccccHHHHHHHHHHhccCCcEEE
Q psy1420 125 DSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIR--NVTRIDKALSEAYRVLKPGGRFL 202 (241)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~--~~~~~~~~l~~~~~~LkpgG~l~ 202 (241)
-++.. +++++.+|+....+ ...|+|+|-..=. -.+.....++.+...|+.++.++
T Consensus 76 -------------------v~g~~--n~evv~gDA~~y~f--e~ADvvicEmlDTaLi~E~qVpV~n~vleFLr~d~tii 132 (252)
T COG4076 76 -------------------VPGDV--NWEVVVGDARDYDF--ENADVVICEMLDTALIEEKQVPVINAVLEFLRYDPTII 132 (252)
T ss_pred -------------------CCCCc--ceEEEecccccccc--cccceeHHHHhhHHhhcccccHHHHHHHHHhhcCCccc
Confidence 33443 78999999998876 3568888732111 12334577788888888888876
No 274
>PRK13699 putative methylase; Provisional
Probab=94.68 E-value=0.11 Score=44.79 Aligned_cols=76 Identities=21% Similarity=0.376 Sum_probs=49.0
Q ss_pred eEEecccCCC--CCCCCceeEEeee--ehh--hc-----c------ccHHHHHHHHHHhccCCcEEEEE-ecC-HHHHHH
Q psy1420 153 RFLEANAEEL--PIESDSYSAYTIA--FGI--RN-----V------TRIDKALSEAYRVLKPGGRFLCL-EFS-HEEFKS 213 (241)
Q Consensus 153 ~~~~~d~~~~--~~~~~~~D~V~~~--~~l--~~-----~------~~~~~~l~~~~~~LkpgG~l~i~-~~~-~~~~~~ 213 (241)
++.++|..+. .++++++|+|+.. +.+ .. + .=....+.+++|+|||||.+++. .+. ...+..
T Consensus 3 ~l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if~~~~~~~~~~~ 82 (227)
T PRK13699 3 RFILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSFYGWNRVDRFMA 82 (227)
T ss_pred eEEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEEeccccHHHHHH
Confidence 3455665443 4556778888765 111 10 0 01257889999999999988763 222 256778
Q ss_pred HHHHCCCceEEEEEe
Q psy1420 214 MIESAGFQYVTYENL 228 (241)
Q Consensus 214 ~l~~~Gf~~~~~~~~ 228 (241)
.++++||.+....-|
T Consensus 83 al~~~GF~l~~~IiW 97 (227)
T PRK13699 83 AWKNAGFSVVGHLVF 97 (227)
T ss_pred HHHHCCCEEeeEEEE
Confidence 889999987766555
No 275
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=94.64 E-value=0.22 Score=39.10 Aligned_cols=88 Identities=18% Similarity=0.254 Sum_probs=56.3
Q ss_pred CeeEEecccCC-CCCCCCceeEEeeee-hhhccccH--HHHHHHHHHhccCCcEEEEEecCH-HHHHHHHHHCCCceEEE
Q psy1420 151 RLRFLEANAEE-LPIESDSYSAYTIAF-GIRNVTRI--DKALSEAYRVLKPGGRFLCLEFSH-EEFKSMIESAGFQYVTY 225 (241)
Q Consensus 151 ~~~~~~~d~~~-~~~~~~~~D~V~~~~-~l~~~~~~--~~~l~~~~~~LkpgG~l~i~~~~~-~~~~~~l~~~Gf~~~~~ 225 (241)
.+++..+|+.+ ++--...+|+|+... +-..-+++ ...++.++++++|||.+. +++. ..++..|.++||.+.+.
T Consensus 32 ~L~L~~gDa~~~l~~l~~~~Da~ylDgFsP~~nPelWs~e~~~~l~~~~~~~~~l~--Tys~a~~Vr~~L~~aGF~v~~~ 109 (124)
T PF05430_consen 32 TLTLWFGDAREMLPQLDARFDAWYLDGFSPAKNPELWSEELFKKLARLSKPGGTLA--TYSSAGAVRRALQQAGFEVEKV 109 (124)
T ss_dssp EEEEEES-HHHHHHHB-T-EEEEEE-SS-TTTSGGGSSHHHHHHHHHHEEEEEEEE--ES--BHHHHHHHHHCTEEEEEE
T ss_pred EEEEEEcHHHHHHHhCcccCCEEEecCCCCcCCcccCCHHHHHHHHHHhCCCcEEE--EeechHHHHHHHHHcCCEEEEc
Confidence 46777888754 222236899998542 21111221 589999999999999876 5554 88999999999997655
Q ss_pred EEecCceeEEEeeecC
Q psy1420 226 ENLTFGVVAIHSGFKL 241 (241)
Q Consensus 226 ~~~~~~~~~~~~~~~~ 241 (241)
. ..++--.+.+|.||
T Consensus 110 ~-g~g~Kr~~~~a~~~ 124 (124)
T PF05430_consen 110 P-GFGRKREMLRAVKP 124 (124)
T ss_dssp E--STTSSEEEEEEC-
T ss_pred C-CCCCcchheEEEcC
Confidence 4 44667777777765
No 276
>KOG0822|consensus
Probab=94.49 E-value=0.11 Score=50.09 Aligned_cols=140 Identities=14% Similarity=0.158 Sum_probs=86.4
Q ss_pred hHHHHHhhhhhccccchhhhhhhhHHHHHHHHHhhcCC---CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhh
Q psy1420 4 PMYEVFENVAKSYDTMNDAMSFGIHRLWKDIFIDRLGP---THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQ 80 (241)
Q Consensus 4 ~~~~~f~~~~~~yd~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (241)
..++.|+.-.-+|+...+ ...+.++++... +...+|+-+|+|.|... ...+.. ++
T Consensus 333 ~TYetFEkD~VKY~~Yq~--------Ai~~AL~Drvpd~~a~~~tVimvlGaGRGPLv-------------~~~lka-a~ 390 (649)
T KOG0822|consen 333 QTYETFEKDPVKYDQYQQ--------AILKALLDRVPDESAKTTTVIMVLGAGRGPLV-------------DASLKA-AE 390 (649)
T ss_pred hhhhhhhccchHHHHHHH--------HHHHHHHhhCcccccCceEEEEEecCCCccHH-------------HHHHHH-HH
Confidence 344555544444544322 223444454332 12457899999999887 333331 00
Q ss_pred hhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccC
Q psy1420 81 LIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAE 160 (241)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 160 (241)
... ...+++++|.+|.++......- ...+. ++++++..|..
T Consensus 391 ~~~------------RkVklyavEKNPNAivtL~~~n--------------------------~~~W~-~~Vtii~~DMR 431 (649)
T KOG0822|consen 391 ETD------------RKVKLYAVEKNPNAIVTLQNRN--------------------------FECWD-NRVTIISSDMR 431 (649)
T ss_pred Hhc------------CceEEEEEecCcchhhhhhhhc--------------------------hhhhc-CeeEEEecccc
Confidence 110 3457899999999887766531 12333 58999999999
Q ss_pred CCCCCCCceeEEeeeehhhcccc---HHHHHHHHHHhccCCcEEEEEe
Q psy1420 161 ELPIESDSYSAYTIAFGIRNVTR---IDKALSEAYRVLKPGGRFLCLE 205 (241)
Q Consensus 161 ~~~~~~~~~D~V~~~~~l~~~~~---~~~~l~~~~~~LkpgG~l~i~~ 205 (241)
..+.+..+.|++++ ..|..+.| -...|..+.+.|||+|+.+=..
T Consensus 432 ~w~ap~eq~DI~VS-ELLGSFGDNELSPECLDG~q~fLkpdgIsIP~s 478 (649)
T KOG0822|consen 432 KWNAPREQADIIVS-ELLGSFGDNELSPECLDGAQKFLKPDGISIPSS 478 (649)
T ss_pred ccCCchhhccchHH-HhhccccCccCCHHHHHHHHhhcCCCceEccch
Confidence 88744467898874 33444433 2478999999999999876443
No 277
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=93.20 E-value=0.36 Score=41.20 Aligned_cols=108 Identities=10% Similarity=0.114 Sum_probs=52.5
Q ss_pred CCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCC
Q psy1420 43 HDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPI 122 (241)
Q Consensus 43 ~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~ 122 (241)
++..|+|+|.-.|..+ .|+..++..++ ..++++++|+........ ..+.+
T Consensus 32 kPd~IIE~Gi~~GGSl----------i~~A~ml~~~~----------------~~~~VigiDIdir~~~~~--a~e~h-- 81 (206)
T PF04989_consen 32 KPDLIIETGIAHGGSL----------IFWASMLELLG----------------GKGKVIGIDIDIRPHNRK--AIESH-- 81 (206)
T ss_dssp --SEEEEE--TTSHHH----------HHHHHHHHHTT-------------------EEEEEES-GTT--S---GGGG---
T ss_pred CCCeEEEEecCCCchH----------HHHHHHHHHhC----------------CCceEEEEeCCcchhchH--HHhhc--
Confidence 3459999998888766 12233333211 457899999964433221 11211
Q ss_pred ccccccccceecceeeeeeccccCCCCCCeeEEecccCCCC-------CC-CCceeEEeeeehhhccccHHHHHHHHHHh
Q psy1420 123 ESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELP-------IE-SDSYSAYTIAFGIRNVTRIDKALSEAYRV 194 (241)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-------~~-~~~~D~V~~~~~l~~~~~~~~~l~~~~~~ 194 (241)
... ++++++++|..... .. .....+|+ --+-|...+..+.|+....+
T Consensus 82 -----------------------p~~-~rI~~i~Gds~d~~~~~~v~~~~~~~~~vlVi-lDs~H~~~hvl~eL~~y~pl 136 (206)
T PF04989_consen 82 -----------------------PMS-PRITFIQGDSIDPEIVDQVRELASPPHPVLVI-LDSSHTHEHVLAELEAYAPL 136 (206)
T ss_dssp ---------------------------TTEEEEES-SSSTHHHHTSGSS----SSEEEE-ESS----SSHHHHHHHHHHT
T ss_pred -----------------------ccc-CceEEEECCCCCHHHHHHHHHhhccCCceEEE-ECCCccHHHHHHHHHHhCcc
Confidence 111 47999999876542 11 11223333 22334456778899999999
Q ss_pred ccCCcEEEEEe
Q psy1420 195 LKPGGRFLCLE 205 (241)
Q Consensus 195 LkpgG~l~i~~ 205 (241)
++||+++++-+
T Consensus 137 v~~G~Y~IVeD 147 (206)
T PF04989_consen 137 VSPGSYLIVED 147 (206)
T ss_dssp --TT-EEEETS
T ss_pred CCCCCEEEEEe
Confidence 99999999855
No 278
>PTZ00357 methyltransferase; Provisional
Probab=92.98 E-value=0.37 Score=48.05 Aligned_cols=154 Identities=15% Similarity=0.134 Sum_probs=84.0
Q ss_pred cchHHHHHhhhhhccccchhhhhhhhHHHHH-----------HHH------HhhcCC-C---CCCeEEEEecCCCcchhH
Q psy1420 2 KLPMYEVFENVAKSYDTMNDAMSFGIHRLWK-----------DIF------IDRLGP-T---HDTKLLDVAGGTDPLANL 60 (241)
Q Consensus 2 ~~~~~~~f~~~~~~yd~~~~~~~~~~~~~~~-----------~~~------~~~l~~-~---~~~~vLdvG~G~G~~~~~ 60 (241)
.+..+++|+.=.-+|+...+++...+..... ..+ ++.... . ....|+-+|+|.|.+.
T Consensus 638 ES~TYEVFEKDpVKYdqYE~AI~kAL~Dw~~~~~~~~~~~~ns~~~~k~~~mdrvp~~~~d~~~vVImVVGAGRGPLV-- 715 (1072)
T PTZ00357 638 SSGVYEVFERDARKYRQYREAVFHYVRDWYAAGAEQQHAHQNSEFFAKHGVMQRVPVPSPDERTLHLVLLGCGRGPLI-- 715 (1072)
T ss_pred chhhHHHHcCCcHHHHHHHHHHHHHHHHhhhccccccccccccccccccccccccccccCCCceEEEEEEcCCccHHH--
Confidence 4578999999999999887776544322110 000 001111 1 1246899999999877
Q ss_pred HHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCCccccccccceecceeeee
Q psy1420 61 LFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVT 140 (241)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (241)
...+.. .+.. ....+++++|.++.+......+.... -.|..
T Consensus 716 -----------draLrA----ak~~---------gvkVrIyAVEKNPpAA~~tllr~~N~------eeW~n--------- 756 (1072)
T PTZ00357 716 -----------DECLHA----VSAL---------GVRLRIFAIEKNLPAAAFTRMRWAND------PEWTQ--------- 756 (1072)
T ss_pred -----------HHHHHH----HHHc---------CCcEEEEEEecCcchHHHHHHHHhcc------ccccc---------
Confidence 444441 1111 03457999999976554443332100 00110
Q ss_pred eccccCCCCCCeeEEecccCCCCCC-----------CCceeEEeeeehhhcccc---HHHHHHHHHHhccC----CcE
Q psy1420 141 RIDKIDIPNPRLRFLEANAEELPIE-----------SDSYSAYTIAFGIRNVTR---IDKALSEAYRVLKP----GGR 200 (241)
Q Consensus 141 ~~~~~~~~~~~~~~~~~d~~~~~~~-----------~~~~D~V~~~~~l~~~~~---~~~~l~~~~~~Lkp----gG~ 200 (241)
......+.++++..|......+ -+++|+|++ ..|..+.| -...|..+.+.||+ +|+
T Consensus 757 ---~~~~~G~~VtII~sDMR~W~~pe~~~s~~~P~~~gKaDIVVS-ELLGSFGDNELSPECLDGaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 757 ---LAYTFGHTLEVIVADGRTIATAAENGSLTLPADFGLCDLIVS-ELLGSLGDNELSPECLEAFHAQLEDIQLSRGI 830 (1072)
T ss_pred ---ccccCCCeEEEEeCcccccccccccccccccccccccceehH-hhhcccccccCCHHHHHHHHHhhhhhcccccc
Confidence 0000113577888887765322 137899985 33433332 23678888888876 776
No 279
>KOG2793|consensus
Probab=92.79 E-value=1.3 Score=38.81 Aligned_cols=37 Identities=5% Similarity=0.006 Sum_probs=31.7
Q ss_pred eeEEeeeehhhccccHHHHHHHHHHhccCCcEEEEEe
Q psy1420 169 YSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 205 (241)
Q Consensus 169 ~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 205 (241)
+|+|+.+-++..-..+..+...+...|..+|.+++..
T Consensus 163 ~DlilasDvvy~~~~~e~Lv~tla~ll~~~~~i~l~~ 199 (248)
T KOG2793|consen 163 FDLILASDVVYEEESFEGLVKTLAFLLAKDGTIFLAY 199 (248)
T ss_pred ccEEEEeeeeecCCcchhHHHHHHHHHhcCCeEEEEE
Confidence 8999999999888888888999999999999665544
No 280
>KOG1596|consensus
Probab=92.75 E-value=0.27 Score=43.14 Aligned_cols=128 Identities=14% Similarity=0.107 Sum_probs=81.5
Q ss_pred hcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHH
Q psy1420 38 RLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANA 117 (241)
Q Consensus 38 ~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~ 117 (241)
.+..+|+.+||-+|++.|+.. .++..++| +..-++++|.|+..-+.+...+
T Consensus 151 nihikpGsKVLYLGAasGttV-------------SHvSDiVG----------------peG~VYAVEfs~rsGRdL~nmA 201 (317)
T KOG1596|consen 151 NIHIKPGSKVLYLGAASGTTV-------------SHVSDIVG----------------PEGCVYAVEFSHRSGRDLINMA 201 (317)
T ss_pred ceeecCCceEEEeeccCCcee-------------ehhhcccC----------------CCceEEEEEecccchHHHHHHh
Confidence 445689999999999999998 88888777 5678999999987655554443
Q ss_pred hcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCC---CCCCceeEEeeeehhhccccHH--H-HHHHH
Q psy1420 118 EELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELP---IESDSYSAYTIAFGIRNVTRID--K-ALSEA 191 (241)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~~D~V~~~~~l~~~~~~~--~-~l~~~ 191 (241)
. +. .++-.+..|+..+. ..-.-+|+|++ .+..|+ . ..-++
T Consensus 202 k-------------------------kR----tNiiPIiEDArhP~KYRmlVgmVDvIFa-----Dvaqpdq~RivaLNA 247 (317)
T KOG1596|consen 202 K-------------------------KR----TNIIPIIEDARHPAKYRMLVGMVDVIFA-----DVAQPDQARIVALNA 247 (317)
T ss_pred h-------------------------cc----CCceeeeccCCCchheeeeeeeEEEEec-----cCCCchhhhhhhhhh
Confidence 3 11 24555666666542 11234677764 333332 2 23356
Q ss_pred HHhccCCcEEEEEecCH------------HHHHHHHHHCCCceEEEEEe
Q psy1420 192 YRVLKPGGRFLCLEFSH------------EEFKSMIESAGFQYVTYENL 228 (241)
Q Consensus 192 ~~~LkpgG~l~i~~~~~------------~~~~~~l~~~Gf~~~~~~~~ 228 (241)
.-.||+||.++++-... +.-.+.|++..++..+.-++
T Consensus 248 ~~FLk~gGhfvisikancidstv~ae~vFa~Ev~klqee~lkP~EqvtL 296 (317)
T KOG1596|consen 248 QYFLKNGGHFVISIKANCIDSTVFAEAVFAAEVKKLQEEQLKPKEQVTL 296 (317)
T ss_pred hhhhccCCeEEEEEecccccccccHHHHHHHHHHHHHHhccCchheecc
Confidence 67899999998864333 33345666666765544444
No 281
>KOG4058|consensus
Probab=92.66 E-value=2.5 Score=34.56 Aligned_cols=116 Identities=11% Similarity=0.121 Sum_probs=73.2
Q ss_pred HHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHH
Q psy1420 33 DIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRF 112 (241)
Q Consensus 33 ~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~ 112 (241)
+-.+.++..++.++.+|+|+|.|... ..... . ......|+|+++-.+..
T Consensus 62 ~nVLSll~~n~~GklvDlGSGDGRiV-------------laaar---------~---------g~~~a~GvELNpwLVay 110 (199)
T KOG4058|consen 62 ENVLSLLRGNPKGKLVDLGSGDGRIV-------------LAAAR---------C---------GLRPAVGVELNPWLVAY 110 (199)
T ss_pred HHHHHHccCCCCCcEEeccCCCceee-------------hhhhh---------h---------CCCcCCceeccHHHHHH
Confidence 33455566677789999999999977 22222 1 23467899999998888
Q ss_pred HHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHHHHH
Q psy1420 113 LEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAY 192 (241)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~~~ 192 (241)
++-.+- +.+.. +..+|..-|+....+.+ |..|+....-..+++.+.- +.
T Consensus 111 srl~a~-------------------------R~g~~-k~trf~RkdlwK~dl~d--y~~vviFgaes~m~dLe~K---L~ 159 (199)
T KOG4058|consen 111 SRLHAW-------------------------RAGCA-KSTRFRRKDLWKVDLRD--YRNVVIFGAESVMPDLEDK---LR 159 (199)
T ss_pred HHHHHH-------------------------HHhcc-cchhhhhhhhhhccccc--cceEEEeehHHHHhhhHHH---HH
Confidence 776655 44554 56788888877766543 4444443333334444332 33
Q ss_pred HhccCCcEEEEEecCHHH
Q psy1420 193 RVLKPGGRFLCLEFSHEE 210 (241)
Q Consensus 193 ~~LkpgG~l~i~~~~~~~ 210 (241)
.-|..|..++...|.-.+
T Consensus 160 ~E~p~nt~vvacRFPLP~ 177 (199)
T KOG4058|consen 160 TELPANTRVVACRFPLPT 177 (199)
T ss_pred hhCcCCCeEEEEecCCCc
Confidence 356677788777666544
No 282
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=92.57 E-value=0.23 Score=46.22 Aligned_cols=105 Identities=13% Similarity=0.167 Sum_probs=71.3
Q ss_pred CCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCC
Q psy1420 43 HDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPI 122 (241)
Q Consensus 43 ~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~ 122 (241)
++.++||.-+|+|-=+ .+++. .+ ....+++.-|+++.+++.++++++
T Consensus 49 ~~~~~lDalaasGvR~-------------iRy~~----E~------------~~~~~v~~NDi~~~a~~~i~~N~~---- 95 (377)
T PF02005_consen 49 GPIRVLDALAASGVRG-------------IRYAK----EL------------AGVDKVTANDISPEAVELIKRNLE---- 95 (377)
T ss_dssp S-EEEEETT-TTSHHH-------------HHHHH----H-------------SSECEEEEEES-HHHHHHHHHHHH----
T ss_pred CCceEEeccccccHHH-------------HHHHH----Hc------------CCCCEEEEecCCHHHHHHHHHhHh----
Confidence 4568999999999766 33333 11 134679999999999999999988
Q ss_pred ccccccccceecceeeeeeccccCCCCCCeeEEecccCCCC-CCCCceeEEeeeehhhccccHHHHHHHHHHhccCCcEE
Q psy1420 123 ESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELP-IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRF 201 (241)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l 201 (241)
-.++....+++.+.|+..+= .....||+|=. .-+..+..+|+.+.+.++.||.|
T Consensus 96 ---------------------~N~~~~~~~~v~~~DAn~ll~~~~~~fD~IDl----DPfGSp~pfldsA~~~v~~gGll 150 (377)
T PF02005_consen 96 ---------------------LNGLEDERIEVSNMDANVLLYSRQERFDVIDL----DPFGSPAPFLDSALQAVKDGGLL 150 (377)
T ss_dssp ---------------------HCT-SGCCEEEEES-HHHHHCHSTT-EEEEEE------SS--HHHHHHHHHHEEEEEEE
T ss_pred ---------------------hccccCceEEEehhhHHHHhhhccccCCEEEe----CCCCCccHhHHHHHHHhhcCCEE
Confidence 55555235778888877642 24578999843 44567789999999999999999
Q ss_pred EEEe
Q psy1420 202 LCLE 205 (241)
Q Consensus 202 ~i~~ 205 (241)
.++.
T Consensus 151 ~vTa 154 (377)
T PF02005_consen 151 CVTA 154 (377)
T ss_dssp EEEE
T ss_pred EEec
Confidence 9865
No 283
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=92.11 E-value=0.84 Score=41.34 Aligned_cols=100 Identities=18% Similarity=0.232 Sum_probs=61.4
Q ss_pred CCceeecCCh--HhHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCC-------Cc
Q psy1420 98 QFPNQIDIPN--PRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIES-------DS 168 (241)
Q Consensus 98 ~~~~~~D~s~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~-------~~ 168 (241)
..++.+|+.+ ..+......+..-|+.+- + ..-.+........+ ++.|.+.|+..+..++ ..
T Consensus 131 l~itlvDiAdWs~VV~~L~~~i~s~p~~sk----~---a~~~~~~~~~~~~~---~~~F~~~DvL~~~~~~l~~ll~~~~ 200 (315)
T PF11312_consen 131 LSITLVDIADWSSVVDRLTTTITSPPPLSK----Y---ASAANWPLIEPDRF---NVSFTQQDVLSLSEDDLKSLLGPPS 200 (315)
T ss_pred ceEEEEEecChHHHHHHHHHhccCCCCccc----c---ccccccccCCccce---eeeEEecccccCChHHHHHHhccch
Confidence 4789999986 355666666553322221 1 00000011112222 4788999988775321 24
Q ss_pred eeEEeeeehhhc-----cccHHHHHHHHHHhccCCcEEEEEecC
Q psy1420 169 YSAYTIAFGIRN-----VTRIDKALSEAYRVLKPGGRFLCLEFS 207 (241)
Q Consensus 169 ~D~V~~~~~l~~-----~~~~~~~l~~~~~~LkpgG~l~i~~~~ 207 (241)
.|+|...|.++. +..--++|..+...++||..|+|++..
T Consensus 201 ~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVvDSp 244 (315)
T PF11312_consen 201 PDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVVDSP 244 (315)
T ss_pred hHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEEcCC
Confidence 688887777753 344568999999999999999998743
No 284
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=92.00 E-value=4.8 Score=35.64 Aligned_cols=109 Identities=18% Similarity=0.196 Sum_probs=66.6
Q ss_pred CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHH-HhcC
Q psy1420 42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEAN-AEEL 120 (241)
Q Consensus 42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~-~~~~ 120 (241)
..+...+|+|+|+..-+ +.++..++. . .....++.+|+|...++...+. ..+.
T Consensus 77 ~g~~~lveLGsGns~Kt-------------r~Llda~~~----~---------~~~~ryvpiDv~a~iL~~ta~ai~~~y 130 (321)
T COG4301 77 TGACTLVELGSGNSTKT-------------RILLDALAH----R---------GSLLRYVPIDVSASILRATATAILREY 130 (321)
T ss_pred hCcceEEEecCCccHHH-------------HHHHHHhhh----c---------CCcceeeeecccHHHHHHHHHHHHHhC
Confidence 44678999999998877 444442221 1 1346799999999988664433 3311
Q ss_pred CCccccccccceecceeeeeeccccCCCCCCeeEEecccCC----CCCCCCceeEEeeeehhhccc--cHHHHHHHHHHh
Q psy1420 121 PIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEE----LPIESDSYSAYTIAFGIRNVT--RIDKALSEAYRV 194 (241)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~----~~~~~~~~D~V~~~~~l~~~~--~~~~~l~~~~~~ 194 (241)
++++ +.-+++|.+. +| ..++-=.++...++.+++ +-..+|..+...
T Consensus 131 ------------------------~~l~---v~~l~~~~~~~La~~~-~~~~Rl~~flGStlGN~tp~e~~~Fl~~l~~a 182 (321)
T COG4301 131 ------------------------PGLE---VNALCGDYELALAELP-RGGRRLFVFLGSTLGNLTPGECAVFLTQLRGA 182 (321)
T ss_pred ------------------------CCCe---EeehhhhHHHHHhccc-CCCeEEEEEecccccCCChHHHHHHHHHHHhc
Confidence 1222 4445555442 23 112222344456677764 346889999999
Q ss_pred ccCCcEEEEE
Q psy1420 195 LKPGGRFLCL 204 (241)
Q Consensus 195 LkpgG~l~i~ 204 (241)
|.||-++++-
T Consensus 183 ~~pGd~~LlG 192 (321)
T COG4301 183 LRPGDYFLLG 192 (321)
T ss_pred CCCcceEEEe
Confidence 9999998874
No 285
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=91.90 E-value=0.46 Score=43.59 Aligned_cols=97 Identities=12% Similarity=0.142 Sum_probs=62.2
Q ss_pred cCCCCCCeEEEEecC-CCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHH
Q psy1420 39 LGPTHDTKLLDVAGG-TDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANA 117 (241)
Q Consensus 39 l~~~~~~~vLdvG~G-~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~ 117 (241)
.+.+|+.+|+-+|+| .|..+ .+++.. ...+++++|.++.-.+.+++.-
T Consensus 162 ~~~~pG~~V~I~G~GGlGh~a-------------vQ~Aka------------------~ga~Via~~~~~~K~e~a~~lG 210 (339)
T COG1064 162 ANVKPGKWVAVVGAGGLGHMA-------------VQYAKA------------------MGAEVIAITRSEEKLELAKKLG 210 (339)
T ss_pred cCCCCCCEEEEECCcHHHHHH-------------HHHHHH------------------cCCeEEEEeCChHHHHHHHHhC
Confidence 345789999999987 22333 333331 3478999999999998888653
Q ss_pred hcCCCccccccccceecceeeeeeccccCCCCCCeeEEecc-cCCCCCCCCceeEEeeeehhhccccHHHHHHHHHHhcc
Q psy1420 118 EELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEAN-AEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLK 196 (241)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~Lk 196 (241)
. ..++... ....+.-.+.+|+|+..- + ...++...+.|+
T Consensus 211 A---------------------------------d~~i~~~~~~~~~~~~~~~d~ii~tv-----~--~~~~~~~l~~l~ 250 (339)
T COG1064 211 A---------------------------------DHVINSSDSDALEAVKEIADAIIDTV-----G--PATLEPSLKALR 250 (339)
T ss_pred C---------------------------------cEEEEcCCchhhHHhHhhCcEEEECC-----C--hhhHHHHHHHHh
Confidence 3 1233322 211111123489988533 2 567788888999
Q ss_pred CCcEEEEEec
Q psy1420 197 PGGRFLCLEF 206 (241)
Q Consensus 197 pgG~l~i~~~ 206 (241)
+||++.+.-.
T Consensus 251 ~~G~~v~vG~ 260 (339)
T COG1064 251 RGGTLVLVGL 260 (339)
T ss_pred cCCEEEEECC
Confidence 9999988643
No 286
>KOG3115|consensus
Probab=91.26 E-value=0.54 Score=40.26 Aligned_cols=35 Identities=26% Similarity=0.239 Sum_probs=23.0
Q ss_pred HHHHHHHHHhccCCcEEEEEecCH---HHHHHHHHHCC
Q psy1420 185 DKALSEAYRVLKPGGRFLCLEFSH---EEFKSMIESAG 219 (241)
Q Consensus 185 ~~~l~~~~~~LkpgG~l~i~~~~~---~~~~~~l~~~G 219 (241)
...+++..-+|++||.++.++--. ..+.+.+++.+
T Consensus 163 ~~l~~eyay~l~~gg~~ytitDv~elh~wm~~~~e~hp 200 (249)
T KOG3115|consen 163 STLLSEYAYVLREGGILYTITDVKELHEWMVKHLEEHP 200 (249)
T ss_pred hhHHHHHHhhhhcCceEEEEeeHHHHHHHHHHHHHhCc
Confidence 356777888999999988654222 44455555555
No 287
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=91.26 E-value=0.61 Score=40.55 Aligned_cols=56 Identities=13% Similarity=0.203 Sum_probs=35.6
Q ss_pred CCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHh
Q psy1420 41 PTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAE 118 (241)
Q Consensus 41 ~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~ 118 (241)
+....+|+|+|+|+|.++ ..++..+.+.. ++-| ...++..+|.|+.+.+.-++.+.
T Consensus 16 p~~~~~ivE~GaG~G~La-------------~diL~~l~~~~---p~~~------~~~~y~ivE~Sp~L~~~Q~~~L~ 71 (252)
T PF02636_consen 16 PSEPLRIVEIGAGRGTLA-------------RDILRYLRKFS---PEVY------KRLRYHIVEISPYLRERQKERLS 71 (252)
T ss_dssp -SS-EEEEEES-TTSHHH-------------HHHHHHHCCTT---HHHH------TTCEEEEE-TTCCCHHHHHHHCC
T ss_pred CCcCcEEEEECCCchHHH-------------HHHHHHHHHhC---hhhh------hcceEEEEcCCHHHHHHHHHHhh
Confidence 334579999999999999 55555222110 1000 24689999999999888877765
No 288
>PRK11524 putative methyltransferase; Provisional
Probab=90.56 E-value=1 Score=40.00 Aligned_cols=78 Identities=17% Similarity=0.146 Sum_probs=49.9
Q ss_pred CeeEEecccCCC--CCCCCceeEEeee--ehhh--------------ccccHHHHHHHHHHhccCCcEEEEEecCH-HHH
Q psy1420 151 RLRFLEANAEEL--PIESDSYSAYTIA--FGIR--------------NVTRIDKALSEAYRVLKPGGRFLCLEFSH-EEF 211 (241)
Q Consensus 151 ~~~~~~~d~~~~--~~~~~~~D~V~~~--~~l~--------------~~~~~~~~l~~~~~~LkpgG~l~i~~~~~-~~~ 211 (241)
..+++++|..+. .++++++|+|++. +.+. +..-....+.++.++|||||.+++..... -..
T Consensus 8 ~~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~~~~~~~~ 87 (284)
T PRK11524 8 AKTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMNSTENMPF 87 (284)
T ss_pred CCEEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEcCchhhhH
Confidence 346777886663 3556789999984 3220 01113578899999999999998753222 223
Q ss_pred HHHHHHCCCceEEEEEe
Q psy1420 212 KSMIESAGFQYVTYENL 228 (241)
Q Consensus 212 ~~~l~~~Gf~~~~~~~~ 228 (241)
..++...||......-|
T Consensus 88 ~~~~~~~~f~~~~~iiW 104 (284)
T PRK11524 88 IDLYCRKLFTIKSRIVW 104 (284)
T ss_pred HHHHHhcCcceEEEEEE
Confidence 45666788876665544
No 289
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=90.43 E-value=1.8 Score=37.95 Aligned_cols=77 Identities=16% Similarity=0.285 Sum_probs=48.0
Q ss_pred ccCCCCCCeeEEecccCCC-C-CCCCceeEEeeeehhhccccHHHHHHHHHHhccCCcEEEEEecCH----HHHHHHHHH
Q psy1420 144 KIDIPNPRLRFLEANAEEL-P-IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH----EEFKSMIES 217 (241)
Q Consensus 144 ~~~~~~~~~~~~~~d~~~~-~-~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~----~~~~~~l~~ 217 (241)
+.++..+++.++.+.+.+. | .+.+++ .+...-...-..-..+|+.++..|.|||++++=++.. +.+.+.+++
T Consensus 151 ~~gl~~~~v~~vkG~F~dTLp~~p~~~I--All~lD~DlYesT~~aLe~lyprl~~GGiIi~DDY~~~gcr~AvdeF~~~ 228 (248)
T PF05711_consen 151 RYGLLDDNVRFVKGWFPDTLPDAPIERI--ALLHLDCDLYESTKDALEFLYPRLSPGGIIIFDDYGHPGCRKAVDEFRAE 228 (248)
T ss_dssp CTTTSSTTEEEEES-HHHHCCC-TT--E--EEEEE---SHHHHHHHHHHHGGGEEEEEEEEESSTTTHHHHHHHHHHHHH
T ss_pred HcCCCcccEEEECCcchhhhccCCCccE--EEEEEeccchHHHHHHHHHHHhhcCCCeEEEEeCCCChHHHHHHHHHHHH
Confidence 4444446899999987643 3 122333 2222222334456789999999999999999988775 777788888
Q ss_pred CCCce
Q psy1420 218 AGFQY 222 (241)
Q Consensus 218 ~Gf~~ 222 (241)
.|...
T Consensus 229 ~gi~~ 233 (248)
T PF05711_consen 229 HGITD 233 (248)
T ss_dssp TT--S
T ss_pred cCCCC
Confidence 88753
No 290
>KOG1099|consensus
Probab=90.11 E-value=0.58 Score=40.79 Aligned_cols=54 Identities=22% Similarity=0.286 Sum_probs=37.7
Q ss_pred CeeEEecccCCCC--------CCCCceeEEeeee-----hhhccccH------HHHHHHHHHhccCCcEEEEE
Q psy1420 151 RLRFLEANAEELP--------IESDSYSAYTIAF-----GIRNVTRI------DKALSEAYRVLKPGGRFLCL 204 (241)
Q Consensus 151 ~~~~~~~d~~~~~--------~~~~~~D~V~~~~-----~l~~~~~~------~~~l~~~~~~LkpgG~l~i~ 204 (241)
.+.-+++|+.... +..++.|+|+|-. ++|.+... ..+|+-...+|||||.|+.-
T Consensus 90 GV~qlq~DIT~~stae~Ii~hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaK 162 (294)
T KOG1099|consen 90 GVIQLQGDITSASTAEAIIEHFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAK 162 (294)
T ss_pred ceEEeecccCCHhHHHHHHHHhCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehh
Confidence 4556777776643 3345789999864 45555432 46778888999999999853
No 291
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=89.96 E-value=0.43 Score=43.22 Aligned_cols=90 Identities=14% Similarity=0.179 Sum_probs=57.0
Q ss_pred HHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhH
Q psy1420 31 WKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRL 110 (241)
Q Consensus 31 ~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~ 110 (241)
+.+.+++.+.+.+++.++|+=.|.|..+ ..++..+ +...++++|.++.++
T Consensus 8 ll~Evl~~L~~~~~g~~vD~T~G~GGHS-------------~aiL~~~-----------------~~~~li~~DrD~~a~ 57 (310)
T PF01795_consen 8 LLKEVLEALNPKPGGIYVDCTFGGGGHS-------------KAILEKL-----------------PNGRLIGIDRDPEAL 57 (310)
T ss_dssp THHHHHHHHT--TT-EEEETT-TTSHHH-------------HHHHHT------------------TT-EEEEEES-HHHH
T ss_pred cHHHHHHhhCcCCCceEEeecCCcHHHH-------------HHHHHhC-----------------CCCeEEEecCCHHHH
Confidence 4566777788889999999999999988 5555411 247899999999999
Q ss_pred HHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCC-----C-CCCceeEEeeeehh
Q psy1420 111 RFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELP-----I-ESDSYSAYTIAFGI 178 (241)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~-~~~~~D~V~~~~~l 178 (241)
+.+.++.. .. .+++.++..++.++. . ...++|-|+.-.++
T Consensus 58 ~~a~~~l~-------------------------~~---~~r~~~~~~~F~~l~~~l~~~~~~~~~dgiL~DLGv 103 (310)
T PF01795_consen 58 ERAKERLK-------------------------KF---DDRFIFIHGNFSNLDEYLKELNGINKVDGILFDLGV 103 (310)
T ss_dssp HHHHCCTC-------------------------CC---CTTEEEEES-GGGHHHHHHHTTTTS-EEEEEEE-S-
T ss_pred HHHHHHHh-------------------------hc---cceEEEEeccHHHHHHHHHHccCCCccCEEEEcccc
Confidence 99987765 22 146778888877653 2 23467777755443
No 292
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=89.00 E-value=0.57 Score=40.39 Aligned_cols=139 Identities=14% Similarity=0.047 Sum_probs=69.7
Q ss_pred cCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHh
Q psy1420 39 LGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAE 118 (241)
Q Consensus 39 l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~ 118 (241)
+....+.++.|..||.|+.. -++| ++.++ .-..+++.|+++.+++.|.++..
T Consensus 47 l~~~~p~tLyDPCCG~gyLL-----------------TVlG-LLh~~----------~l~~v~aSDId~~aL~lA~kNL~ 98 (246)
T PF11599_consen 47 LEGKGPYTLYDPCCGSGYLL-----------------TVLG-LLHRR----------RLRRVYASDIDEDALELARKNLS 98 (246)
T ss_dssp SSS-S-EEEEETT-TTSHHH-----------------HHHH-HHTGG----------GEEEEEEEES-HHHHHHHHHHHH
T ss_pred hcCCCCeeeeccCCCccHHH-----------------HHHH-HhhhH----------HHHhHhcccCCHHHHHHHHHhhh
Confidence 33455668999999999876 3334 44433 34679999999999999999877
Q ss_pred cCCCccccccccceec------------ceeeeeecc----ccCCCCCCeeEEecccCCCC-----CCCCceeEEeeeeh
Q psy1420 119 ELPIESDSYSAYTIAF------------GIRNVTRID----KIDIPNPRLRFLEANAEELP-----IESDSYSAYTIAFG 177 (241)
Q Consensus 119 ~~~~~~~~~~~~~~~~------------~~~~~~~~~----~~~~~~~~~~~~~~d~~~~~-----~~~~~~D~V~~~~~ 177 (241)
-+..+.-+-+...+.. .....++.. ..|-. ......+.|+.... -.....|+|+.-.-
T Consensus 99 LLt~eGL~~R~~eL~~~~e~~~kps~~eAl~sA~RL~~~l~~~g~~-~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlP 177 (246)
T PF11599_consen 99 LLTPEGLEARREELRELYEQYGKPSHAEALESADRLRERLAAEGGD-EPHAIFRADVFDPSPLAVLDAGFTPDIVITDLP 177 (246)
T ss_dssp CCSHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHTTSS---EEEEE--TT-HHHHHHHHTT---SEEEEE--
T ss_pred hccHhHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhcCCC-CchhheeecccCCchhhhhccCCCCCEEEecCC
Confidence 4443332221111111 111111111 11111 12566777766521 11234699986532
Q ss_pred hh---ccc------cHHHHHHHHHHhccCCcEEEEEec
Q psy1420 178 IR---NVT------RIDKALSEAYRVLKPGGRFLCLEF 206 (241)
Q Consensus 178 l~---~~~------~~~~~l~~~~~~LkpgG~l~i~~~ 206 (241)
-. .|. ...+.|+.++.+|.+++++.+++-
T Consensus 178 YG~~t~W~g~~~~~p~~~ml~~l~~vLp~~sVV~v~~k 215 (246)
T PF11599_consen 178 YGEMTSWQGEGSGGPVAQMLNSLAPVLPERSVVAVSDK 215 (246)
T ss_dssp CCCSSSTTS---HHHHHHHHHHHHCCS-TT-EEEEEES
T ss_pred CcccccccCCCCCCcHHHHHHHHHhhCCCCcEEEEecC
Confidence 22 222 236899999999965666666443
No 293
>PRK10742 putative methyltransferase; Provisional
Probab=88.76 E-value=1 Score=39.62 Aligned_cols=138 Identities=10% Similarity=0.005 Sum_probs=78.5
Q ss_pred HHHHhhcCCCCCC--eEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhH
Q psy1420 33 DIFIDRLGPTHDT--KLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRL 110 (241)
Q Consensus 33 ~~~~~~l~~~~~~--~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~ 110 (241)
+.+.+-++.+++. +|||+=+|+|..+ ..++. .++.++++|.++...
T Consensus 76 ~~l~kAvglk~g~~p~VLD~TAGlG~Da-------------~~las-------------------~G~~V~~vEr~p~va 123 (250)
T PRK10742 76 EAVAKAVGIKGDYLPDVVDATAGLGRDA-------------FVLAS-------------------VGCRVRMLERNPVVA 123 (250)
T ss_pred cHHHHHhCCCCCCCCEEEECCCCccHHH-------------HHHHH-------------------cCCEEEEEECCHHHH
Confidence 5566667777777 8999999999988 33333 467799999999988
Q ss_pred HHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCC-CCCCCceeEEeeeehhhccc---cHHH
Q psy1420 111 RFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL-PIESDSYSAYTIAFGIRNVT---RIDK 186 (241)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~D~V~~~~~l~~~~---~~~~ 186 (241)
......+...... ......+. .++++++.|.... ....++||+|+.-=...+-. ...+
T Consensus 124 alL~dgL~ra~~~-----------------~~~~~~~~-~ri~l~~~da~~~L~~~~~~fDVVYlDPMfp~~~ksa~vkk 185 (250)
T PRK10742 124 ALLDDGLARGYAD-----------------AEIGGWLQ-ERLQLIHASSLTALTDITPRPQVVYLDPMFPHKQKSALVKK 185 (250)
T ss_pred HHHHHHHHHhhhc-----------------cccchhhh-ceEEEEeCcHHHHHhhCCCCCcEEEECCCCCCCccccchhh
Confidence 8887777621000 00000011 3577888886543 21234799998654433311 1223
Q ss_pred HHHHHHHhccCCcEEEEEecCHHHHHHHHHHCCCceEEEE
Q psy1420 187 ALSEAYRVLKPGGRFLCLEFSHEEFKSMIESAGFQYVTYE 226 (241)
Q Consensus 187 ~l~~~~~~LkpgG~l~i~~~~~~~~~~~l~~~Gf~~~~~~ 226 (241)
-|+.++.+...+ .-..+-++..++-+.-++|-..
T Consensus 186 ~mr~~~~l~g~d------~d~~~lL~~Al~~A~kRVVVKr 219 (250)
T PRK10742 186 EMRVFQSLVGPD------LDADGLLEPARLLATKRVVVKR 219 (250)
T ss_pred hHHHHHHhcCCC------CChHHHHHHHHHhcCceEEEec
Confidence 344443333222 1223555666666665554333
No 294
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=88.29 E-value=3.8 Score=33.63 Aligned_cols=75 Identities=15% Similarity=0.212 Sum_probs=52.8
Q ss_pred EecccCCCC----CCCCceeEEeeeehhhc---------c----ccHHHHHHHHHHhccCCcEEEEEecCH-----HHHH
Q psy1420 155 LEANAEELP----IESDSYSAYTIAFGIRN---------V----TRIDKALSEAYRVLKPGGRFLCLEFSH-----EEFK 212 (241)
Q Consensus 155 ~~~d~~~~~----~~~~~~D~V~~~~~l~~---------~----~~~~~~l~~~~~~LkpgG~l~i~~~~~-----~~~~ 212 (241)
...|+..+. ....+||.|+.++-... + .=...++..+.++|+++|.+.+.-... -.++
T Consensus 58 ~~VDat~l~~~~~~~~~~FDrIiFNFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~py~~W~i~ 137 (166)
T PF10354_consen 58 HGVDATKLHKHFRLKNQRFDRIIFNFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQPYDSWNIE 137 (166)
T ss_pred cCCCCCcccccccccCCcCCEEEEeCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCCCccccHH
Confidence 345555543 23578999998764322 1 113588899999999999998864333 5778
Q ss_pred HHHHHCCCceEEEEEec
Q psy1420 213 SMIESAGFQYVTYENLT 229 (241)
Q Consensus 213 ~~l~~~Gf~~~~~~~~~ 229 (241)
.+.+.+||...+.....
T Consensus 138 ~lA~~~gl~l~~~~~F~ 154 (166)
T PF10354_consen 138 ELAAEAGLVLVRKVPFD 154 (166)
T ss_pred HHHHhcCCEEEEEecCC
Confidence 99999999988876653
No 295
>KOG2539|consensus
Probab=87.65 E-value=1.8 Score=41.28 Aligned_cols=87 Identities=16% Similarity=0.128 Sum_probs=54.0
Q ss_pred cCCCceeecCChHhHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccC--CCCCC-CCceeEE
Q psy1420 96 IRQFPNQIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAE--ELPIE-SDSYSAY 172 (241)
Q Consensus 96 ~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~--~~~~~-~~~~D~V 172 (241)
....++.+|.+..|.......... ....+ ...+....+. .+|.. ...||+|
T Consensus 225 t~~~~~~Vdrs~~~~~~~e~~lr~----------------------~~~~g----~~~v~~~~~~r~~~pi~~~~~yDlv 278 (491)
T KOG2539|consen 225 TKREYSLVDRSRAMLKQSEKNLRD----------------------GSHIG----EPIVRKLVFHRQRLPIDIKNGYDLV 278 (491)
T ss_pred ccceeEeeccchHHHHHHHHhhcC----------------------hhhcC----chhccccchhcccCCCCcccceeeE
Confidence 567899999999999888877651 00111 1111110111 12333 3469999
Q ss_pred eeeehhhccccH----HHHHHHHHHhccCCcEEEEEecCH
Q psy1420 173 TIAFGIRNVTRI----DKALSEAYRVLKPGGRFLCLEFSH 208 (241)
Q Consensus 173 ~~~~~l~~~~~~----~~~l~~~~~~LkpgG~l~i~~~~~ 208 (241)
++++.+++.... ...-+...+..++|+++++++-+.
T Consensus 279 i~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~g~ 318 (491)
T KOG2539|consen 279 ICAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEKGT 318 (491)
T ss_pred EeeeeeeccCCchhhhhhhHHHHHhccCCCceEEEEecCC
Confidence 999999876544 233344455778899999887665
No 296
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=87.08 E-value=2.9 Score=38.38 Aligned_cols=24 Identities=29% Similarity=0.397 Sum_probs=19.4
Q ss_pred ccHHHHHHHHHHhccCCcEEEEEe
Q psy1420 182 TRIDKALSEAYRVLKPGGRFLCLE 205 (241)
Q Consensus 182 ~~~~~~l~~~~~~LkpgG~l~i~~ 205 (241)
.+....++++.+.++|+|+++...
T Consensus 283 ~~~~~~~~~~~~~l~~~G~iv~~g 306 (386)
T cd08283 283 TDRPDALREAIQAVRKGGTVSIIG 306 (386)
T ss_pred cCchHHHHHHHHHhccCCEEEEEc
Confidence 345678899999999999988753
No 297
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=86.37 E-value=1.3 Score=34.10 Aligned_cols=18 Identities=17% Similarity=0.230 Sum_probs=14.5
Q ss_pred CCCCCeEEEEecCCCcch
Q psy1420 41 PTHDTKLLDVAGGTDPLA 58 (241)
Q Consensus 41 ~~~~~~vLdvG~G~G~~~ 58 (241)
..+....+|+|||+|.+.
T Consensus 56 ~~~~~~FVDlGCGNGLLV 73 (112)
T PF07757_consen 56 EQKFQGFVDLGCGNGLLV 73 (112)
T ss_pred CCCCCceEEccCCchHHH
Confidence 345567999999999877
No 298
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=86.12 E-value=13 Score=34.37 Aligned_cols=63 Identities=10% Similarity=0.004 Sum_probs=38.0
Q ss_pred HHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecC----Ch
Q psy1420 32 KDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDI----PN 107 (241)
Q Consensus 32 ~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~----s~ 107 (241)
...+++-+...+..+|+|+|.|.|.=- -.++. .++..++. .+..++++++. +.
T Consensus 99 NqaIleA~~g~~~vHIID~~i~~G~QW-------------~~Liq----aLa~R~~g------pp~LrIT~i~~~~~~~~ 155 (374)
T PF03514_consen 99 NQAILEAFEGERRVHIIDFGIGFGVQW-------------PSLIQ----ALASRPGG------PPSLRITGIGPPNSGSA 155 (374)
T ss_pred hHHHHHHhccCcceEEEeccCCcchHH-------------HHHHH----HHhcCCCC------CCeEEEEeccCCCCCcH
Confidence 456667666677889999999988522 22233 23332210 14668999998 55
Q ss_pred HhHHHHHHHH
Q psy1420 108 PRLRFLEANA 117 (241)
Q Consensus 108 ~~~~~~~~~~ 117 (241)
..++...+++
T Consensus 156 ~~l~~~g~rL 165 (374)
T PF03514_consen 156 DELQETGRRL 165 (374)
T ss_pred HHHHHHHHHH
Confidence 5555554443
No 299
>KOG2671|consensus
Probab=85.66 E-value=1 Score=41.51 Aligned_cols=110 Identities=21% Similarity=0.205 Sum_probs=73.8
Q ss_pred CCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHH------
Q psy1420 40 GPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFL------ 113 (241)
Q Consensus 40 ~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~------ 113 (241)
..++|.-|+|-=.|||.+. ...+. -++.+.|.|++-.++...
T Consensus 205 mv~pGdivyDPFVGTGslL-------------vsaa~-------------------FGa~viGtDIDyr~vragrg~~~s 252 (421)
T KOG2671|consen 205 MVKPGDIVYDPFVGTGSLL-------------VSAAH-------------------FGAYVIGTDIDYRTVRAGRGEDES 252 (421)
T ss_pred ccCCCCEEecCccccCcee-------------eehhh-------------------hcceeeccccchheeecccCCCcc
Confidence 4578999999999999876 22222 356799999988877743
Q ss_pred -HHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCC-CceeEEeee--ehhhc---------
Q psy1420 114 -EANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIES-DSYSAYTIA--FGIRN--------- 180 (241)
Q Consensus 114 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~~D~V~~~--~~l~~--------- 180 (241)
+++.. +-+..+.-+.++.+|+...|+.. ..||+|+|- ++++.
T Consensus 253 i~aNFk-------------------------QYg~~~~fldvl~~D~sn~~~rsn~~fDaIvcDPPYGVRe~~rk~~~k~ 307 (421)
T KOG2671|consen 253 IKANFK-------------------------QYGSSSQFLDVLTADFSNPPLRSNLKFDAIVCDPPYGVREGARKTGKKK 307 (421)
T ss_pred hhHhHH-------------------------HhCCcchhhheeeecccCcchhhcceeeEEEeCCCcchhhhhhhhcccC
Confidence 22332 22333345788889988888654 489999974 33321
Q ss_pred -------------cc---------cHHHHHHHHHHhccCCcEEEEEec
Q psy1420 181 -------------VT---------RIDKALSEAYRVLKPGGRFLCLEF 206 (241)
Q Consensus 181 -------------~~---------~~~~~l~~~~~~LkpgG~l~i~~~ 206 (241)
.+ -....|.-.++.|..||++.+.-.
T Consensus 308 ~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrlv~w~p 355 (421)
T KOG2671|consen 308 SVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRLVFWLP 355 (421)
T ss_pred cccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCceEEEecC
Confidence 11 013566777889999999988643
No 300
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=84.18 E-value=12 Score=33.08 Aligned_cols=42 Identities=14% Similarity=0.153 Sum_probs=30.8
Q ss_pred eEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHh
Q psy1420 46 KLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAE 118 (241)
Q Consensus 46 ~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~ 118 (241)
+++|+-||.|..+ ..+.. .....+.++|+++.+.+..+.+..
T Consensus 2 ~v~dLFsG~Gg~~-------------~gl~~------------------~G~~~v~a~e~~~~a~~~~~~N~~ 43 (275)
T cd00315 2 RVIDLFAGIGGFR-------------LGLEK------------------AGFEIVAANEIDKSAAETYEANFP 43 (275)
T ss_pred cEEEEccCcchHH-------------HHHHH------------------cCCEEEEEEeCCHHHHHHHHHhCC
Confidence 6899999999887 22222 023457899999999988877754
No 301
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=83.24 E-value=3.6 Score=38.05 Aligned_cols=61 Identities=16% Similarity=0.147 Sum_probs=40.7
Q ss_pred HhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHH
Q psy1420 36 IDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEA 115 (241)
Q Consensus 36 ~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~ 115 (241)
.+.+...+...++|+|.|+|.++ ..++..+.++ .|+-| ...++..+|+|+...+.-++
T Consensus 70 wq~~g~p~~~~lvEiGaG~G~l~-------------~DiL~~l~~L---~P~~~------~~~~~~iiE~s~~L~~~Qk~ 127 (370)
T COG1565 70 WQELGRPAPLKLVEIGAGRGTLA-------------SDILRTLRRL---YPELY------EALSYYIIEPSPELRARQKE 127 (370)
T ss_pred HHHhcCCCCceEEEeCCCcChHH-------------HHHHHHHHHh---CHHHH------hcceEEEEecCHHHHHHHHH
Confidence 34445556678999999999998 5554422221 11111 35689999999998888777
Q ss_pred HHh
Q psy1420 116 NAE 118 (241)
Q Consensus 116 ~~~ 118 (241)
...
T Consensus 128 ~L~ 130 (370)
T COG1565 128 TLK 130 (370)
T ss_pred HHh
Confidence 766
No 302
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=83.23 E-value=2.4 Score=34.97 Aligned_cols=61 Identities=18% Similarity=0.179 Sum_probs=41.0
Q ss_pred CCceeEEeeeehhhccc-----c---H---HHHHHHHHHhccCCcEEEEEecCH------------HHHHHHHHHCCCce
Q psy1420 166 SDSYSAYTIAFGIRNVT-----R---I---DKALSEAYRVLKPGGRFLCLEFSH------------EEFKSMIESAGFQY 222 (241)
Q Consensus 166 ~~~~D~V~~~~~l~~~~-----~---~---~~~l~~~~~~LkpgG~l~i~~~~~------------~~~~~~l~~~Gf~~ 222 (241)
.++||.+.|..++.|+. | | .+++.++.++|||||.|++...-. ...+=.+--.||++
T Consensus 61 ~~~fD~~as~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG~d~i~fNahRiYg~~rL~mm~~gfe~ 140 (177)
T PF03269_consen 61 AGSFDFAASFSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVGTDAIQFNAHRIYGPIRLAMMFYGFEW 140 (177)
T ss_pred hccchhhheechhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeecCCcceEEecceeecHhHHHHHhCCcEE
Confidence 46799988887776542 2 2 588999999999999999854222 33333444567776
Q ss_pred EEEE
Q psy1420 223 VTYE 226 (241)
Q Consensus 223 ~~~~ 226 (241)
+...
T Consensus 141 i~tf 144 (177)
T PF03269_consen 141 IDTF 144 (177)
T ss_pred Eeee
Confidence 6543
No 303
>PRK11524 putative methyltransferase; Provisional
Probab=83.15 E-value=1.7 Score=38.54 Aligned_cols=45 Identities=11% Similarity=-0.005 Sum_probs=37.8
Q ss_pred CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHh
Q psy1420 42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAE 118 (241)
Q Consensus 42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~ 118 (241)
++|..|||.=+|+|+++ ..... .+..++|+|+++...+.+.+++.
T Consensus 207 ~~GD~VLDPF~GSGTT~-------------~AA~~-------------------lgR~~IG~Ei~~~Y~~~a~~Rl~ 251 (284)
T PRK11524 207 NPGDIVLDPFAGSFTTG-------------AVAKA-------------------SGRKFIGIEINSEYIKMGLRRLD 251 (284)
T ss_pred CCCCEEEECCCCCcHHH-------------HHHHH-------------------cCCCEEEEeCCHHHHHHHHHHHH
Confidence 68889999999999988 22222 57789999999999999999876
No 304
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=82.47 E-value=3.2 Score=36.38 Aligned_cols=47 Identities=17% Similarity=0.245 Sum_probs=33.9
Q ss_pred CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHh
Q psy1420 42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAE 118 (241)
Q Consensus 42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~ 118 (241)
.++.++||+|.|.- . +.|.+|.. + ..-..+|.|+++..++.|+..+.
T Consensus 77 ~~~i~~LDIGvGAn--C---------------IYPliG~~-----e--------YgwrfvGseid~~sl~sA~~ii~ 123 (292)
T COG3129 77 GKNIRILDIGVGAN--C---------------IYPLIGVH-----E--------YGWRFVGSEIDSQSLSSAKAIIS 123 (292)
T ss_pred cCceEEEeeccCcc--c---------------ccccccce-----e--------ecceeecCccCHHHHHHHHHHHH
Confidence 45667899977653 2 34655532 1 45578999999999999999887
No 305
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=82.24 E-value=2.9 Score=38.11 Aligned_cols=76 Identities=17% Similarity=0.128 Sum_probs=58.4
Q ss_pred cCCCceeecCChHhHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeee
Q psy1420 96 IRQFPNQIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIA 175 (241)
Q Consensus 96 ~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~ 175 (241)
....++..|.|...++....... .++..+..+...+...-.+.|+++..
T Consensus 190 lgA~Vtild~n~~rl~~ldd~f~-------------------------------~rv~~~~st~~~iee~v~~aDlvIga 238 (371)
T COG0686 190 LGADVTILDLNIDRLRQLDDLFG-------------------------------GRVHTLYSTPSNIEEAVKKADLVIGA 238 (371)
T ss_pred cCCeeEEEecCHHHHhhhhHhhC-------------------------------ceeEEEEcCHHHHHHHhhhccEEEEE
Confidence 36789999999888877765544 45777777766664444578999877
Q ss_pred ehhhccccHHHHHHHHHHhccCCcEEE
Q psy1420 176 FGIRNVTRIDKALSEAYRVLKPGGRFL 202 (241)
Q Consensus 176 ~~l~~~~~~~~~l~~~~~~LkpgG~l~ 202 (241)
-.+---..|.-..+++.+.||||+.++
T Consensus 239 VLIpgakaPkLvt~e~vk~MkpGsViv 265 (371)
T COG0686 239 VLIPGAKAPKLVTREMVKQMKPGSVIV 265 (371)
T ss_pred EEecCCCCceehhHHHHHhcCCCcEEE
Confidence 666667788889999999999999887
No 306
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=82.08 E-value=1.2 Score=37.00 Aligned_cols=50 Identities=14% Similarity=0.109 Sum_probs=33.9
Q ss_pred HHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHH
Q psy1420 33 DIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRF 112 (241)
Q Consensus 33 ~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~ 112 (241)
+.+++.. ..++..|||.=||+|+++ ..... .+.+.+|+|+++...+.
T Consensus 182 ~~lI~~~-t~~gdiVlDpF~GSGTT~-------------~aa~~-------------------l~R~~ig~E~~~~y~~~ 228 (231)
T PF01555_consen 182 ERLIKAS-TNPGDIVLDPFAGSGTTA-------------VAAEE-------------------LGRRYIGIEIDEEYCEI 228 (231)
T ss_dssp HHHHHHH-S-TT-EEEETT-TTTHHH-------------HHHHH-------------------TT-EEEEEESSHHHHHH
T ss_pred HHHHHhh-hccceeeehhhhccChHH-------------HHHHH-------------------cCCeEEEEeCCHHHHHH
Confidence 4444333 367889999999999988 33333 46789999999999888
Q ss_pred HHH
Q psy1420 113 LEA 115 (241)
Q Consensus 113 ~~~ 115 (241)
|.+
T Consensus 229 a~~ 231 (231)
T PF01555_consen 229 AKK 231 (231)
T ss_dssp HHH
T ss_pred hcC
Confidence 753
No 307
>KOG1501|consensus
Probab=81.50 E-value=1.7 Score=41.32 Aligned_cols=42 Identities=17% Similarity=0.179 Sum_probs=32.7
Q ss_pred eEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHh
Q psy1420 46 KLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAE 118 (241)
Q Consensus 46 ~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~ 118 (241)
.+||+|+|||.++ +++-.. ....+++++.-..|...+++...
T Consensus 69 ~vLdigtGTGLLS----------------------mMAvra---------gaD~vtA~EvfkPM~d~arkI~~ 110 (636)
T KOG1501|consen 69 FVLDIGTGTGLLS----------------------MMAVRA---------GADSVTACEVFKPMVDLARKIMH 110 (636)
T ss_pred EEEEccCCccHHH----------------------HHHHHh---------cCCeEEeehhhchHHHHHHHHHh
Confidence 4899999999887 222111 24569999999999999999988
No 308
>KOG0024|consensus
Probab=81.30 E-value=10 Score=34.83 Aligned_cols=105 Identities=16% Similarity=0.132 Sum_probs=63.4
Q ss_pred hcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHH
Q psy1420 38 RLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANA 117 (241)
Q Consensus 38 ~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~ 117 (241)
+...+++.+||-+|+|+=.... ..++..+ ...++..+|+++..++.|++.-
T Consensus 164 ~~~vk~Gs~vLV~GAGPIGl~t------------~l~Aka~-----------------GA~~VVi~d~~~~Rle~Ak~~G 214 (354)
T KOG0024|consen 164 RAGVKKGSKVLVLGAGPIGLLT------------GLVAKAM-----------------GASDVVITDLVANRLELAKKFG 214 (354)
T ss_pred hcCcccCCeEEEECCcHHHHHH------------HHHHHHc-----------------CCCcEEEeecCHHHHHHHHHhC
Confidence 3445789999999998732221 2222322 3568999999999999998732
Q ss_pred hcCCCccccccccceecceeeeeeccccCCCCCCeeEEec--ccCCC------CCCCCceeEEeeeehhhccccHHHHHH
Q psy1420 118 EELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEA--NAEEL------PIESDSYSAYTIAFGIRNVTRIDKALS 189 (241)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--d~~~~------~~~~~~~D~V~~~~~l~~~~~~~~~l~ 189 (241)
. . .+..... +...+ ......+|..+.+.+++ ..++
T Consensus 215 a-----------------------------~--~~~~~~~~~~~~~~~~~v~~~~g~~~~d~~~dCsG~~------~~~~ 257 (354)
T KOG0024|consen 215 A-----------------------------T--VTDPSSHKSSPQELAELVEKALGKKQPDVTFDCSGAE------VTIR 257 (354)
T ss_pred C-----------------------------e--EEeeccccccHHHHHHHHHhhccccCCCeEEEccCch------HHHH
Confidence 1 0 0000000 00110 11223478888776664 4566
Q ss_pred HHHHhccCCcEEEEEecCH
Q psy1420 190 EAYRVLKPGGRFLCLEFSH 208 (241)
Q Consensus 190 ~~~~~LkpgG~l~i~~~~~ 208 (241)
.....+++||.+.+..+..
T Consensus 258 aai~a~r~gGt~vlvg~g~ 276 (354)
T KOG0024|consen 258 AAIKATRSGGTVVLVGMGA 276 (354)
T ss_pred HHHHHhccCCEEEEeccCC
Confidence 6678899999988877655
No 309
>KOG1227|consensus
Probab=80.72 E-value=1.3 Score=40.03 Aligned_cols=98 Identities=18% Similarity=0.233 Sum_probs=62.2
Q ss_pred CCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCCc
Q psy1420 44 DTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIE 123 (241)
Q Consensus 44 ~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~ 123 (241)
+-.|+|+=+|-|+++ +| +|+......++++|.+|..++..+++++
T Consensus 195 ~eviVDLYAGIGYFT----------------lp--------------flV~agAk~V~A~EwNp~svEaLrR~~~----- 239 (351)
T KOG1227|consen 195 GEVIVDLYAGIGYFT----------------LP--------------FLVTAGAKTVFACEWNPWSVEALRRNAE----- 239 (351)
T ss_pred cchhhhhhcccceEE----------------ee--------------hhhccCccEEEEEecCHHHHHHHHHHHH-----
Confidence 357999999999999 22 1222246789999999999999999988
Q ss_pred cccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHHHHHHhccCCcE-EE
Q psy1420 124 SDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGR-FL 202 (241)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~-l~ 202 (241)
...+. ++...+.+|-..+ .+....|.|... -+|.-++--..+.++|||.|- ++
T Consensus 240 --------------------~N~V~-~r~~i~~gd~R~~-~~~~~AdrVnLG----LlPSse~~W~~A~k~Lk~eggsil 293 (351)
T KOG1227|consen 240 --------------------ANNVM-DRCRITEGDNRNP-KPRLRADRVNLG----LLPSSEQGWPTAIKALKPEGGSIL 293 (351)
T ss_pred --------------------hcchH-HHHHhhhcccccc-Cccccchheeec----cccccccchHHHHHHhhhcCCcEE
Confidence 43333 3455555554443 234456666532 234444444456677777543 44
No 310
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=80.57 E-value=12 Score=34.17 Aligned_cols=76 Identities=20% Similarity=0.239 Sum_probs=47.5
Q ss_pred CCCceeecCChHhHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEec-ccC-C-CCCC-CCceeEE
Q psy1420 97 RQFPNQIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEA-NAE-E-LPIE-SDSYSAY 172 (241)
Q Consensus 97 ~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-d~~-~-~~~~-~~~~D~V 172 (241)
...++.+|.++..++.|++.... . .+..... +.. . .... ...+|++
T Consensus 193 a~~Viv~d~~~~Rl~~A~~~~g~------------------------~------~~~~~~~~~~~~~~~~~t~g~g~D~v 242 (350)
T COG1063 193 ASVVIVVDRSPERLELAKEAGGA------------------------D------VVVNPSEDDAGAEILELTGGRGADVV 242 (350)
T ss_pred CceEEEeCCCHHHHHHHHHhCCC------------------------e------EeecCccccHHHHHHHHhCCCCCCEE
Confidence 46899999999999999874330 0 0000000 000 0 0111 2368999
Q ss_pred eeeehhhccccHHHHHHHHHHhccCCcEEEEEecCH
Q psy1420 173 TIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH 208 (241)
Q Consensus 173 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 208 (241)
+-+.+ ...++..+.++++|||.+.+.-...
T Consensus 243 ie~~G------~~~~~~~ai~~~r~gG~v~~vGv~~ 272 (350)
T COG1063 243 IEAVG------SPPALDQALEALRPGGTVVVVGVYG 272 (350)
T ss_pred EECCC------CHHHHHHHHHHhcCCCEEEEEeccC
Confidence 97666 2347888999999999998875543
No 311
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=80.22 E-value=9.4 Score=37.02 Aligned_cols=40 Identities=15% Similarity=0.065 Sum_probs=29.6
Q ss_pred CceeEEeeeehhhccccHHHHHHHHHHhccCCcEEEEEec
Q psy1420 167 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEF 206 (241)
Q Consensus 167 ~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 206 (241)
..+|+|+.+-+...-+.+.-..+++.+.+||||.++.+..
T Consensus 247 ~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 247 KEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred CCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence 3589999877664444554446999999999999886543
No 312
>PF14740 DUF4471: Domain of unknown function (DUF4471)
Probab=79.26 E-value=3.8 Score=36.77 Aligned_cols=121 Identities=18% Similarity=0.272 Sum_probs=65.1
Q ss_pred CCCceeecCChHhHHHHHHHHhcC-CCccccccccceecceeeeeeccccCC---CCCCeeEEecccCC-CCC---CCCc
Q psy1420 97 RQFPNQIDIPNPRLRFLEANAEEL-PIESDSYSAYTIAFGIRNVTRIDKIDI---PNPRLRFLEANAEE-LPI---ESDS 168 (241)
Q Consensus 97 ~~~~~~~D~s~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~d~~~-~~~---~~~~ 168 (241)
.....+.|++..++......+... +...++-.... ..........+...+ .+-.+.|+..+... ++. -.+.
T Consensus 144 ~~~~~a~dis~~Nv~~~~~el~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~vkVhFLPld~~~~L~~K~ky~~~ 222 (289)
T PF14740_consen 144 QHVKTATDISEHNVMELFHELQTGEDYEFASGDPED-EIDIEGTESYDKPDLIPPENVKVHFLPLDSLEKLPHKSKYQNF 222 (289)
T ss_pred eeccccceecHHHHHHHHHHHHhCCCccCCCCChhh-hccccccccccccccccCCCcEEEEeCchHHHHHhhHHhhcCC
Confidence 345788999998887765554422 11111110000 000011111111111 11235566555332 221 1468
Q ss_pred eeEEeeeehhhccccHHHHHHHHHHhccCCcEEEEEe------cCH-------HHHHHHHHHCCCceE
Q psy1420 169 YSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE------FSH-------EEFKSMIESAGFQYV 223 (241)
Q Consensus 169 ~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~------~~~-------~~~~~~l~~~Gf~~~ 223 (241)
||+|+.+....+.-.+. +.++++|+|.|++-. +.+ ..+.++++++||+.+
T Consensus 223 Fd~ifvs~s~vh~L~p~-----l~~~~a~~A~LvvEtaKfmvdLrKEq~~~F~~kv~eLA~~aG~~p~ 285 (289)
T PF14740_consen 223 FDLIFVSCSMVHFLKPE-----LFQALAPDAVLVVETAKFMVDLRKEQLQEFVKKVKELAKAAGFKPV 285 (289)
T ss_pred CCEEEEhhhhHhhcchH-----HHHHhCCCCEEEEEcchhheeCCHHHHHHHHHHHHHHHHHCCCccc
Confidence 99999877665544444 777889999988733 222 888999999999854
No 313
>KOG1253|consensus
Probab=79.03 E-value=1.6 Score=41.86 Aligned_cols=105 Identities=11% Similarity=0.119 Sum_probs=71.4
Q ss_pred CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCC
Q psy1420 42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP 121 (241)
Q Consensus 42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~ 121 (241)
.++.+|||.-|++|.-+ ++++.-++ ...++.+-|.++..++..+.+++
T Consensus 108 ~~~l~vLealsAtGlrs-------------lRya~El~----------------~v~~v~AnD~~~~aV~~i~~Nv~--- 155 (525)
T KOG1253|consen 108 EKSLRVLEALSATGLRS-------------LRYAKELP----------------GVRQVVANDLNENAVTSIQRNVE--- 155 (525)
T ss_pred cCcchHHHHhhhhhHHH-------------HHHHHHhc----------------chhhhcccCCCHHHHHHHHhhhh---
Confidence 35668899888888766 44433111 35689999999999999999887
Q ss_pred CccccccccceecceeeeeeccccCCCCCCeeEEecccCCC----CCCCCceeEEeeeehhhccccHHHHHHHHHHhccC
Q psy1420 122 IESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL----PIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKP 197 (241)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~----~~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~Lkp 197 (241)
-.+.. +.+.....|+..+ +-....||+|=. .-...+..+|+.+.+.+..
T Consensus 156 ----------------------~N~v~-~ive~~~~DA~~lM~~~~~~~~~FDvIDL----DPyGs~s~FLDsAvqav~~ 208 (525)
T KOG1253|consen 156 ----------------------LNGVE-DIVEPHHSDANVLMYEHPMVAKFFDVIDL----DPYGSPSPFLDSAVQAVRD 208 (525)
T ss_pred ----------------------hcCch-hhcccccchHHHHHHhccccccccceEec----CCCCCccHHHHHHHHHhhc
Confidence 22222 2344455555443 222467888842 3344567889999999999
Q ss_pred CcEEEEEe
Q psy1420 198 GGRFLCLE 205 (241)
Q Consensus 198 gG~l~i~~ 205 (241)
||.|++..
T Consensus 209 gGLL~vT~ 216 (525)
T KOG1253|consen 209 GGLLCVTC 216 (525)
T ss_pred CCEEEEEe
Confidence 99998854
No 314
>KOG2920|consensus
Probab=78.83 E-value=1.4 Score=39.37 Aligned_cols=37 Identities=19% Similarity=0.189 Sum_probs=28.6
Q ss_pred ceeEEeeeehhhccccHHHH-HHHHHHhccCCcEEEEE
Q psy1420 168 SYSAYTIAFGIRNVTRIDKA-LSEAYRVLKPGGRFLCL 204 (241)
Q Consensus 168 ~~D~V~~~~~l~~~~~~~~~-l~~~~~~LkpgG~l~i~ 204 (241)
+||+|.++..+.+....... .-.....++++|.+++.
T Consensus 196 ~ydlIlsSetiy~~~~~~~~~~~~r~~l~~~D~~~~~a 233 (282)
T KOG2920|consen 196 HYDLILSSETIYSIDSLAVLYLLHRPCLLKTDGVFYVA 233 (282)
T ss_pred chhhhhhhhhhhCcchhhhhHhhhhhhcCCccchhhhh
Confidence 79999999999887766655 55555677889988764
No 315
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=77.78 E-value=7.2 Score=34.98 Aligned_cols=33 Identities=9% Similarity=0.163 Sum_probs=23.6
Q ss_pred ceeEEeeeehhhccccHHHHHHHHHHhccCCcEEEEEec
Q psy1420 168 SYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEF 206 (241)
Q Consensus 168 ~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 206 (241)
.+|+|+.+.+- ...++.+.+.|++||++++...
T Consensus 235 ~~D~vid~~G~------~~~~~~~~~~l~~~G~iv~~G~ 267 (343)
T PRK09880 235 YFDVSFEVSGH------PSSINTCLEVTRAKGVMVQVGM 267 (343)
T ss_pred CCCEEEECCCC------HHHHHHHHHHhhcCCEEEEEcc
Confidence 58999865432 2356778889999999887643
No 316
>PRK13699 putative methylase; Provisional
Probab=77.63 E-value=3.6 Score=35.44 Aligned_cols=45 Identities=11% Similarity=0.062 Sum_probs=36.9
Q ss_pred CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHh
Q psy1420 42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAE 118 (241)
Q Consensus 42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~ 118 (241)
.+|..|||.=||+|.+. ..... .+...+|+|+++...+.+.+++.
T Consensus 162 ~~g~~vlDpf~Gsgtt~-------------~aa~~-------------------~~r~~~g~e~~~~y~~~~~~r~~ 206 (227)
T PRK13699 162 HPNAIVLDPFAGSGSTC-------------VAALQ-------------------SGRRYIGIELLEQYHRAGQQRLA 206 (227)
T ss_pred CCCCEEEeCCCCCCHHH-------------HHHHH-------------------cCCCEEEEecCHHHHHHHHHHHH
Confidence 57889999999999987 33222 46789999999999999988876
No 317
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=77.26 E-value=8.5 Score=35.76 Aligned_cols=100 Identities=16% Similarity=0.141 Sum_probs=68.5
Q ss_pred CCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCCc
Q psy1420 44 DTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIE 123 (241)
Q Consensus 44 ~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~ 123 (241)
..+|+|.-+|+|-=. ++.+. |....+++.-|+||.+.+.++.++.
T Consensus 53 ~~~v~DalsatGiRg-------------IRya~-----------------E~~~~~v~lNDisp~Avelik~Nv~----- 97 (380)
T COG1867 53 PKRVLDALSATGIRG-------------IRYAV-----------------ETGVVKVVLNDISPKAVELIKENVR----- 97 (380)
T ss_pred CeEEeecccccchhH-------------hhhhh-----------------hcCccEEEEccCCHHHHHHHHHHHH-----
Confidence 568999999999755 33322 3334489999999999999999987
Q ss_pred cccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCC-CCceeEEeeeehhhccccHHHHHHHHHHhccCCcEEE
Q psy1420 124 SDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIE-SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFL 202 (241)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~ 202 (241)
.+.. .....+..|+..+=.. ...||+|= +.=+..|..++..+.+.++.||++.
T Consensus 98 --------------------~N~~--~~~~v~n~DAN~lm~~~~~~fd~ID----iDPFGSPaPFlDaA~~s~~~~G~l~ 151 (380)
T COG1867 98 --------------------LNSG--EDAEVINKDANALLHELHRAFDVID----IDPFGSPAPFLDAALRSVRRGGLLC 151 (380)
T ss_pred --------------------hcCc--ccceeecchHHHHHHhcCCCccEEe----cCCCCCCchHHHHHHHHhhcCCEEE
Confidence 2211 1234444555544221 35677773 2334567788888999999999998
Q ss_pred EE
Q psy1420 203 CL 204 (241)
Q Consensus 203 i~ 204 (241)
+.
T Consensus 152 vT 153 (380)
T COG1867 152 VT 153 (380)
T ss_pred EE
Confidence 75
No 318
>COG4121 Uncharacterized conserved protein [Function unknown]
Probab=74.89 E-value=8.8 Score=33.80 Aligned_cols=73 Identities=21% Similarity=0.252 Sum_probs=49.8
Q ss_pred CeeEEecccCCC-CCCCC---ceeEEeeeehhhccccH----HHHHHHHHHhccCCcEEEEEecCH-HHHHHHHHHCCCc
Q psy1420 151 RLRFLEANAEEL-PIESD---SYSAYTIAFGIRNVTRI----DKALSEAYRVLKPGGRFLCLEFSH-EEFKSMIESAGFQ 221 (241)
Q Consensus 151 ~~~~~~~d~~~~-~~~~~---~~D~V~~~~~l~~~~~~----~~~l~~~~~~LkpgG~l~i~~~~~-~~~~~~l~~~Gf~ 221 (241)
.+++..+|+... |--+. ++|+.+.. ++.-..+| ...+..+.+..+|||.+. +++. .-++.-++++||+
T Consensus 147 ~l~l~~gd~~~~~p~~~~~~~~~dAwflD-gFsP~kNP~mW~~e~l~~~a~~~~~~~~l~--t~ssA~~vRr~L~~aGF~ 223 (252)
T COG4121 147 LLGLVIGDAGDGIPPVPRRRPGTDAWFLD-GFRPVKNPEMWEDELLNLMARIPYRDPTLA--TFAAAIAVRRRLEQAGFT 223 (252)
T ss_pred eeeeeeeehhhcCCcccccccCccEEecC-CccccCChhhccHHHHHHHHhhcCCCCcee--chHHHHHHHHHHHHcCce
Confidence 466777887543 32222 67887642 22222333 588999999999999985 5555 6679999999999
Q ss_pred eEEEE
Q psy1420 222 YVTYE 226 (241)
Q Consensus 222 ~~~~~ 226 (241)
+.+..
T Consensus 224 v~~r~ 228 (252)
T COG4121 224 VEKRT 228 (252)
T ss_pred eeecC
Confidence 87753
No 319
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=71.49 E-value=70 Score=28.01 Aligned_cols=55 Identities=15% Similarity=0.131 Sum_probs=34.0
Q ss_pred CCeeEEecccCCC--------CCCCCceeEEeeeehhhcccc--HHHHHHHHHHhccCCcEEEEE
Q psy1420 150 PRLRFLEANAEEL--------PIESDSYSAYTIAFGIRNVTR--IDKALSEAYRVLKPGGRFLCL 204 (241)
Q Consensus 150 ~~~~~~~~d~~~~--------~~~~~~~D~V~~~~~l~~~~~--~~~~l~~~~~~LkpgG~l~i~ 204 (241)
++..++..|+... .+..+..-++++-.++.+++. ..+.++.+.+...||+.+++-
T Consensus 132 ~~~~~v~~Dl~~~w~~~L~~~gfd~~~ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~d 196 (260)
T TIGR00027 132 AHRRAVPVDLRQDWPAALAAAGFDPTAPTAWLWEGLLMYLTEEAVDALLAFIAELSAPGSRLAFD 196 (260)
T ss_pred CceEEeccCchhhHHHHHHhCCCCCCCCeeeeecchhhcCCHHHHHHHHHHHHHhCCCCcEEEEE
Confidence 4567777776511 111223345555566666654 467888888888888888774
No 320
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=68.86 E-value=37 Score=29.70 Aligned_cols=34 Identities=21% Similarity=0.465 Sum_probs=24.4
Q ss_pred CCceeEEeeeehhhccccHHHHHHHHHHhccCCcEEEEEe
Q psy1420 166 SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 205 (241)
Q Consensus 166 ~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 205 (241)
...+|+++.+.+. ...+..+.+.|+++|.++...
T Consensus 230 ~~~~D~vid~~g~------~~~~~~~~~~l~~~G~~v~~g 263 (338)
T cd08254 230 GGGFDVIFDFVGT------QPTFEDAQKAVKPGGRIVVVG 263 (338)
T ss_pred CCCceEEEECCCC------HHHHHHHHHHhhcCCEEEEEC
Confidence 3568998854321 346778889999999988653
No 321
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=68.04 E-value=8.3 Score=34.90 Aligned_cols=38 Identities=26% Similarity=0.477 Sum_probs=29.8
Q ss_pred cccHHHHHHHHHHhccCCcEEEEEecCH---HHHHHHHHHC
Q psy1420 181 VTRIDKALSEAYRVLKPGGRFLCLEFSH---EEFKSMIESA 218 (241)
Q Consensus 181 ~~~~~~~l~~~~~~LkpgG~l~i~~~~~---~~~~~~l~~~ 218 (241)
+...+.+|..+..+|+|||++++++|.. .-+++.+++.
T Consensus 216 L~~L~~~L~~~~~~L~~gGrl~VISfHSLEDRiVK~~f~~~ 256 (305)
T TIGR00006 216 LEELEEALQFAPNLLAPGGRLSIISFHSLEDRIVKNFFREL 256 (305)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEEecCcHHHHHHHHHHHHh
Confidence 3456899999999999999999999877 4555555543
No 322
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=67.39 E-value=9.1 Score=31.56 Aligned_cols=48 Identities=29% Similarity=0.396 Sum_probs=33.4
Q ss_pred ccHHHHHHHHHHhccCCcEEEEEecCH--H--HHHHHHHHCC-CceEEEEEec
Q psy1420 182 TRIDKALSEAYRVLKPGGRFLCLEFSH--E--EFKSMIESAG-FQYVTYENLT 229 (241)
Q Consensus 182 ~~~~~~l~~~~~~LkpgG~l~i~~~~~--~--~~~~~l~~~G-f~~~~~~~~~ 229 (241)
.-....+.+++|+|||||.+++..-.. . ....+.+..| |.+.....|.
T Consensus 33 ~~~~~~~~~~~rvLk~~g~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~iiW~ 85 (231)
T PF01555_consen 33 EWMEEWLKECYRVLKPGGSIFIFIDDREIAGFLFELALEIFGGFFLRNEIIWN 85 (231)
T ss_dssp HHHHHHHHHHHHHEEEEEEEEEEE-CCEECTHHHHHHHHHHTT-EEEEEEEEE
T ss_pred HHHHHHHHHHHhhcCCCeeEEEEecchhhhHHHHHHHHHHhhhhheeccceeE
Confidence 345788999999999999988753222 2 4556666677 8887776663
No 323
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=67.07 E-value=9.5 Score=35.57 Aligned_cols=59 Identities=19% Similarity=0.336 Sum_probs=47.5
Q ss_pred CCeeEEecccCCC--CCCCCceeEEeeeehhhcccc--HHHHHHHHHHhccCCcEEEEEecCH
Q psy1420 150 PRLRFLEANAEEL--PIESDSYSAYTIAFGIRNVTR--IDKALSEAYRVLKPGGRFLCLEFSH 208 (241)
Q Consensus 150 ~~~~~~~~d~~~~--~~~~~~~D~V~~~~~l~~~~~--~~~~l~~~~~~LkpgG~l~i~~~~~ 208 (241)
++++++..++.+. ..+++++|.++.+-...++++ ..+.++++.+.++|||+++.-+...
T Consensus 275 drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~Rsa~~ 337 (380)
T PF11899_consen 275 DRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARPGARVLWRSAAV 337 (380)
T ss_pred CeEEEEeccHHHHHHhCCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEEEeeCCC
Confidence 5889999998765 245789999998888777754 4688899999999999999876554
No 324
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=66.04 E-value=22 Score=31.91 Aligned_cols=87 Identities=9% Similarity=0.048 Sum_probs=55.2
Q ss_pred CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCC
Q psy1420 42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP 121 (241)
Q Consensus 42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~ 121 (241)
.+++...|+|+-+|.++ .+++. ..-.++++|-.+ |.+..- .
T Consensus 210 ~~~M~avDLGAcPGGWT-------------yqLVk-------------------r~m~V~aVDng~-ma~sL~---d--- 250 (358)
T COG2933 210 APGMWAVDLGACPGGWT-------------YQLVK-------------------RNMRVYAVDNGP-MAQSLM---D--- 250 (358)
T ss_pred cCCceeeecccCCCccc-------------hhhhh-------------------cceEEEEeccch-hhhhhh---c---
Confidence 68999999999999999 66666 567899999543 222221 1
Q ss_pred CccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHHHHHHhccCC
Q psy1420 122 IESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPG 198 (241)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~Lkpg 198 (241)
.+.++-...|-........+.|-.+| ..++.|.+.-..+...|..|
T Consensus 251 ---------------------------tg~v~h~r~DGfk~~P~r~~idWmVC----DmVEkP~rv~~li~~Wl~nG 296 (358)
T COG2933 251 ---------------------------TGQVTHLREDGFKFRPTRSNIDWMVC----DMVEKPARVAALIAKWLVNG 296 (358)
T ss_pred ---------------------------ccceeeeeccCcccccCCCCCceEEe----ehhcCcHHHHHHHHHHHHcc
Confidence 13455566665544223456777776 34556666666666666554
No 325
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=65.57 E-value=8.4 Score=33.55 Aligned_cols=94 Identities=14% Similarity=0.168 Sum_probs=47.7
Q ss_pred HHHHhhcCCCCCC--eEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhH
Q psy1420 33 DIFIDRLGPTHDT--KLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRL 110 (241)
Q Consensus 33 ~~~~~~l~~~~~~--~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~ 110 (241)
+.+.+-++.+++. +|||+=+|-|.-+ .-+.- .+++++++|-||..-
T Consensus 63 ~~l~kA~Glk~~~~~~VLDaTaGLG~Da-------------~vlA~-------------------~G~~V~~lErspvia 110 (234)
T PF04445_consen 63 DPLAKAVGLKPGMRPSVLDATAGLGRDA-------------FVLAS-------------------LGCKVTGLERSPVIA 110 (234)
T ss_dssp SHHHHHTT-BTTB---EEETT-TTSHHH-------------HHHHH-------------------HT--EEEEE--HHHH
T ss_pred cHHHHHhCCCCCCCCEEEECCCcchHHH-------------HHHHc-------------------cCCeEEEEECCHHHH
Confidence 4566666666654 8999999999987 22211 356799999999765
Q ss_pred HHHHHHHhcCCCccccccccceecceeeeeeccccCC---CCCCeeEEecccCC-CCCCCCceeEEeeeehhh
Q psy1420 111 RFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDI---PNPRLRFLEANAEE-LPIESDSYSAYTIAFGIR 179 (241)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~d~~~-~~~~~~~~D~V~~~~~l~ 179 (241)
......+..... .... ...+++++.+|..+ ++.+..++|+|.+--.+.
T Consensus 111 ~Ll~dGL~r~~~---------------------~~~~~~~~~~ri~l~~~d~~~~L~~~~~s~DVVY~DPMFp 162 (234)
T PF04445_consen 111 ALLKDGLKRAQQ---------------------DPELLAEAMRRIQLIHGDALEYLRQPDNSFDVVYFDPMFP 162 (234)
T ss_dssp HHHHHHHHHHHH---------------------STTTHHHHHHHEEEEES-CCCHCCCHSS--SEEEE--S--
T ss_pred HHHHHHHHHHHh---------------------CcHhHHHHHhCCEEEcCCHHHHHhhcCCCCCEEEECCCCC
Confidence 544433220000 0010 00368889988776 444567999999755443
No 326
>PHA01634 hypothetical protein
Probab=64.39 E-value=13 Score=29.67 Aligned_cols=45 Identities=11% Similarity=-0.011 Sum_probs=35.2
Q ss_pred CCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHh
Q psy1420 43 HDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAE 118 (241)
Q Consensus 43 ~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~ 118 (241)
++.+|+|+|++.|..+ +-++- .....++++++++...+..+.++.
T Consensus 28 k~KtV~dIGA~iGdSa-------------iYF~l------------------~GAK~Vva~E~~~kl~k~~een~k 72 (156)
T PHA01634 28 YQRTIQIVGADCGSSA-------------LYFLL------------------RGASFVVQYEKEEKLRKKWEEVCA 72 (156)
T ss_pred cCCEEEEecCCccchh-------------hHHhh------------------cCccEEEEeccCHHHHHHHHHHhh
Confidence 5669999999999887 33322 145689999999999999888776
No 327
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=64.33 E-value=2.2 Score=34.46 Aligned_cols=58 Identities=12% Similarity=0.033 Sum_probs=34.8
Q ss_pred CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceee
Q psy1420 42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQI 103 (241)
Q Consensus 42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (241)
+||+.++-+..+..... +.+.++.+|.....++.+. +.+....|.||++|....+..-
T Consensus 72 kpGG~l~i~d~~~~~~~---~~~~~~~~~~~~~~~~~~~-~~~~~~~y~yl~~si~~f~~~~ 129 (160)
T PLN02232 72 KPGSRVSILDFNKSNQS---VTTFMQGWMIDNVVVPVAT-VYDLAKEYEYLKYSINGYLTGE 129 (160)
T ss_pred CcCeEEEEEECCCCChH---HHHHHHHHHccchHhhhhH-HhCChHHHHhHHHHHHHCcCHH
Confidence 56666543333343333 4556667777666666665 3455778999998866655433
No 328
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=64.28 E-value=7.3 Score=35.35 Aligned_cols=39 Identities=26% Similarity=0.561 Sum_probs=31.4
Q ss_pred cccHHHHHHHHHHhccCCcEEEEEecCH---HHHHHHHHHCC
Q psy1420 181 VTRIDKALSEAYRVLKPGGRFLCLEFSH---EEFKSMIESAG 219 (241)
Q Consensus 181 ~~~~~~~l~~~~~~LkpgG~l~i~~~~~---~~~~~~l~~~G 219 (241)
+..++.+|..+..+|+|||++++++|.. .-+++.+++.-
T Consensus 217 L~~L~~~L~~a~~~L~~gGrl~VISFHSLEDRiVK~~f~~~~ 258 (310)
T PF01795_consen 217 LEELERGLEAAPDLLKPGGRLVVISFHSLEDRIVKQFFRELA 258 (310)
T ss_dssp HHHHHHHHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHHHHhcCCcEEEEEEecchhhHHHHHHHHHhc
Confidence 3456889999999999999999999988 55666666544
No 329
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=62.63 E-value=18 Score=32.53 Aligned_cols=33 Identities=21% Similarity=0.285 Sum_probs=23.8
Q ss_pred CceeEEeeeehhhccccHHHHHHHHHHhccCCcEEEEEe
Q psy1420 167 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 205 (241)
Q Consensus 167 ~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 205 (241)
..+|+|+.+.+- ...+....+.|++||.+++..
T Consensus 237 ~~~d~vid~~g~------~~~~~~~~~~l~~~G~~v~~G 269 (355)
T cd08230 237 GEFDLIIEATGV------PPLAFEALPALAPNGVVILFG 269 (355)
T ss_pred CCCCEEEECcCC------HHHHHHHHHHccCCcEEEEEe
Confidence 468998865431 236778889999999987754
No 330
>KOG2651|consensus
Probab=62.55 E-value=12 Score=35.07 Aligned_cols=44 Identities=14% Similarity=0.068 Sum_probs=32.1
Q ss_pred CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHH
Q psy1420 42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEAN 116 (241)
Q Consensus 42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~ 116 (241)
.+-..++|+|.|.|+.+ . ++. -..+..+.++|-|+...+++.+.
T Consensus 152 ~gi~~vvD~GaG~G~LS-------------r-~lS-----------------l~y~lsV~aIegsq~~~~ra~rL 195 (476)
T KOG2651|consen 152 TGIDQVVDVGAGQGHLS-------------R-FLS-----------------LGYGLSVKAIEGSQRLVERAQRL 195 (476)
T ss_pred cCCCeeEEcCCCchHHH-------------H-HHh-----------------hccCceEEEeccchHHHHHHHHH
Confidence 44457999999999988 2 211 12567899999998887777654
No 331
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=61.63 E-value=29 Score=28.97 Aligned_cols=34 Identities=29% Similarity=0.501 Sum_probs=23.3
Q ss_pred CCceeEEeeeehhhccccHHHHHHHHHHhccCCcEEEEEe
Q psy1420 166 SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 205 (241)
Q Consensus 166 ~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 205 (241)
...+|+++.+.+-. ..+..+.+.|+++|.++...
T Consensus 199 ~~~~d~vi~~~~~~------~~~~~~~~~l~~~G~~v~~~ 232 (271)
T cd05188 199 GGGADVVIDAVGGP------ETLAQALRLLRPGGRIVVVG 232 (271)
T ss_pred CCCCCEEEECCCCH------HHHHHHHHhcccCCEEEEEc
Confidence 35689998643221 35666778889999988754
No 332
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=61.41 E-value=13 Score=33.42 Aligned_cols=37 Identities=30% Similarity=0.612 Sum_probs=29.1
Q ss_pred cccHHHHHHHHHHhccCCcEEEEEecCH---HHHHHHHHH
Q psy1420 181 VTRIDKALSEAYRVLKPGGRFLCLEFSH---EEFKSMIES 217 (241)
Q Consensus 181 ~~~~~~~l~~~~~~LkpgG~l~i~~~~~---~~~~~~l~~ 217 (241)
+...+.+|..+..+|+|||++++++|.. .-+++.+++
T Consensus 212 l~~L~~~L~~~~~~L~~gGrl~visfHSlEDriVK~~f~~ 251 (296)
T PRK00050 212 LEELERALEAALDLLKPGGRLAVISFHSLEDRIVKRFFRE 251 (296)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEEecCcHHHHHHHHHHHH
Confidence 3456889999999999999999999877 445555554
No 333
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=60.25 E-value=35 Score=30.80 Aligned_cols=101 Identities=14% Similarity=0.207 Sum_probs=66.2
Q ss_pred CCceeecCChHhHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCC---CCceeEEee
Q psy1420 98 QFPNQIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIE---SDSYSAYTI 174 (241)
Q Consensus 98 ~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~---~~~~D~V~~ 174 (241)
.++..+|+++..+.+..+.++ +.++. +++.+..|..++ ++ ..+||+.+.
T Consensus 176 k~iaVvDIDERli~fi~k~ae-------------------------e~g~~--~ie~~~~Dlr~p-lpe~~~~kFDvfiT 227 (354)
T COG1568 176 KRIAVVDIDERLIKFIEKVAE-------------------------ELGYN--NIEAFVFDLRNP-LPEDLKRKFDVFIT 227 (354)
T ss_pred ceEEEEechHHHHHHHHHHHH-------------------------HhCcc--chhheeehhccc-ChHHHHhhCCeeec
Confidence 368899999999999998888 55655 577778887764 33 458998763
Q ss_pred eehhhccccHHHHHHHHHHhccCC---cEEEEEecCH-----HHHHH-HHHHCCCceEEEEE
Q psy1420 175 AFGIRNVTRIDKALSEAYRVLKPG---GRFLCLEFSH-----EEFKS-MIESAGFQYVTYEN 227 (241)
Q Consensus 175 ~~~l~~~~~~~~~l~~~~~~Lkpg---G~l~i~~~~~-----~~~~~-~l~~~Gf~~~~~~~ 227 (241)
- --..+.....++++=-..||.. |++.+..... .+++. ++...||.+.++.+
T Consensus 228 D-PpeTi~alk~FlgRGI~tLkg~~~aGyfgiT~ressidkW~eiQr~lIn~~gvVITdiir 288 (354)
T COG1568 228 D-PPETIKALKLFLGRGIATLKGEGCAGYFGITRRESSIDKWREIQRILINEMGVVITDIIR 288 (354)
T ss_pred C-chhhHHHHHHHHhccHHHhcCCCccceEeeeeccccHHHHHHHHHHHHHhcCeeeHhhhh
Confidence 1 1112233345555555566655 7888764333 55555 67788888766543
No 334
>KOG2352|consensus
Probab=60.09 E-value=20 Score=34.49 Aligned_cols=90 Identities=16% Similarity=0.120 Sum_probs=49.6
Q ss_pred CCCceeecCChHhHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeee
Q psy1420 97 RQFPNQIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAF 176 (241)
Q Consensus 97 ~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~ 176 (241)
...++++++.|.+++.+..... +....=-.+.+..|+..+.+..+..- ++..||++..--
T Consensus 319 ~~~i~~ve~dP~~l~va~q~f~---f~q~~r~~V~i~dGl~~~~~~~k~~~-----------------~~~~~dvl~~dv 378 (482)
T KOG2352|consen 319 KFQITAVEIDPEMLEVATQYFG---FMQSDRNKVHIADGLDFLQRTAKSQQ-----------------EDICPDVLMVDV 378 (482)
T ss_pred ccceeEEEEChhHhhccHhhhc---hhhhhhhhhhHhhchHHHHHHhhccc-----------------cccCCcEEEEEC
Confidence 5789999999999999988765 11110112233333333332222111 223455554210
Q ss_pred ---hhhcccc------HHHHHHHHHHhccCCcEEEEEec
Q psy1420 177 ---GIRNVTR------IDKALSEAYRVLKPGGRFLCLEF 206 (241)
Q Consensus 177 ---~l~~~~~------~~~~l~~~~~~LkpgG~l~i~~~ 206 (241)
-.|.... ...+|..+...|.|.|.+++.-.
T Consensus 379 ds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inlv 417 (482)
T KOG2352|consen 379 DSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFIINLV 417 (482)
T ss_pred CCCCcccCcCCchHHHHHHHHHHHhhccCccceEEEEEe
Confidence 0121221 14788889999999999987543
No 335
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=59.52 E-value=45 Score=28.55 Aligned_cols=82 Identities=15% Similarity=0.252 Sum_probs=50.5
Q ss_pred CCeeEEecccCCCCCC------CCceeEEeee-ehhhccccHHHHHHHHHHhccCCcEEEEEecCH--------------
Q psy1420 150 PRLRFLEANAEELPIE------SDSYSAYTIA-FGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH-------------- 208 (241)
Q Consensus 150 ~~~~~~~~d~~~~~~~------~~~~D~V~~~-~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~-------------- 208 (241)
+++.+++++...+... +..+--|+.+ -+-|+..+....|+-..++|..|-++++-+...
T Consensus 118 p~i~f~egss~dpai~eqi~~~~~~y~kIfvilDsdHs~~hvLAel~~~~pllsaG~Y~vVeDs~v~dlp~~~~p~~~g~ 197 (237)
T COG3510 118 PDILFIEGSSTDPAIAEQIRRLKNEYPKIFVILDSDHSMEHVLAELKLLAPLLSAGDYLVVEDSNVNDLPGPVLPWRFGG 197 (237)
T ss_pred CCeEEEeCCCCCHHHHHHHHHHhcCCCcEEEEecCCchHHHHHHHHHHhhhHhhcCceEEEecccccCCCCcccchhcCC
Confidence 3688888886665311 1223344433 444566667778888889999999998865322
Q ss_pred ---HHHHHHHHHCC--CceEEEEEecCc
Q psy1420 209 ---EEFKSMIESAG--FQYVTYENLTFG 231 (241)
Q Consensus 209 ---~~~~~~l~~~G--f~~~~~~~~~~~ 231 (241)
+.++..+++.+ |++.+...-.||
T Consensus 198 gP~~AVe~ylr~~p~~yEiD~~~~~kfg 225 (237)
T COG3510 198 GPYEAVEAYLREFPQDYEIDTSRENKFG 225 (237)
T ss_pred ChHHHHHHHHHhCCcccccchhhHhhcc
Confidence 66777777776 554433333343
No 336
>KOG2078|consensus
Probab=58.97 E-value=8.4 Score=36.56 Aligned_cols=46 Identities=20% Similarity=0.221 Sum_probs=38.1
Q ss_pred CCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHh
Q psy1420 41 PTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAE 118 (241)
Q Consensus 41 ~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~ 118 (241)
.++|..|.|+-||-|..+ ..+.. ..+.+++-|.++.+++..+.++.
T Consensus 247 fk~gevv~D~FaGvGPfa-------------~Pa~k-------------------K~crV~aNDLNpesik~Lk~ni~ 292 (495)
T KOG2078|consen 247 FKPGEVVCDVFAGVGPFA-------------LPAAK-------------------KGCRVYANDLNPESIKWLKANIK 292 (495)
T ss_pred cCCcchhhhhhcCcCccc-------------cchhh-------------------cCcEEEecCCCHHHHHHHHHhcc
Confidence 367889999999999988 32222 46899999999999999998876
No 337
>cd01842 SGNH_hydrolase_like_5 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=58.49 E-value=42 Score=28.13 Aligned_cols=41 Identities=12% Similarity=0.135 Sum_probs=26.8
Q ss_pred CCCceeEEeeeehhhcccc------------HHHHHHHHHHhccCCcEEEEEe
Q psy1420 165 ESDSYSAYTIAFGIRNVTR------------IDKALSEAYRVLKPGGRFLCLE 205 (241)
Q Consensus 165 ~~~~~D~V~~~~~l~~~~~------------~~~~l~~~~~~LkpgG~l~i~~ 205 (241)
..++.|+|+.+++++.+.. .++.+..+..+|+|+..++-.+
T Consensus 47 ~gg~~DVIi~Ns~LWDl~ry~~~~~~~Y~~NL~~Lf~rLk~~lp~~allIW~t 99 (183)
T cd01842 47 EGGRLDLVIMNSCLWDLSRYQRNSMKTYRENLERLFSKLDSVLPIECLIVWNT 99 (183)
T ss_pred cCCceeEEEEecceecccccCCCCHHHHHHHHHHHHHHHHhhCCCccEEEEec
Confidence 3456799999999875432 3455556666666776666544
No 338
>PF11253 DUF3052: Protein of unknown function (DUF3052); InterPro: IPR021412 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=58.48 E-value=43 Score=26.38 Aligned_cols=62 Identities=15% Similarity=0.098 Sum_probs=46.0
Q ss_pred CceeEEeeeehhhccccHHHHHHHHHHhccCCcEEEEEecCH--------HHHHHHHHHCCCceEEEEEec
Q psy1420 167 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH--------EEFKSMIESAGFQYVTYENLT 229 (241)
Q Consensus 167 ~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~--------~~~~~~l~~~Gf~~~~~~~~~ 229 (241)
+-+|.|+.-+--. =.+....|-.+.+.|..+|.+.++.... .++.+....+|+...+.....
T Consensus 44 dvvD~vllWwR~~-DgDL~D~LvDa~~~L~d~G~IWvltPK~gr~g~V~~~~I~eaA~taGL~~t~~~~v~ 113 (127)
T PF11253_consen 44 DVVDVVLLWWRDD-DGDLVDALVDARTNLADDGVIWVLTPKAGRPGHVEPSDIREAAPTAGLVQTKSCAVG 113 (127)
T ss_pred ccccEEEEEEECC-cchHHHHHHHHHhhhcCCCEEEEEccCCCCCCCCCHHHHHHHHhhcCCeeeeeeccC
Confidence 4578887522111 1256788888999999999999987554 899999999999877766543
No 339
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=57.17 E-value=1.7e+02 Score=28.07 Aligned_cols=126 Identities=16% Similarity=0.260 Sum_probs=76.2
Q ss_pred HHHHHHHHhhcC---------CCCCCeEEEEe-cCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCC
Q psy1420 29 RLWKDIFIDRLG---------PTHDTKLLDVA-GGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQ 98 (241)
Q Consensus 29 ~~~~~~~~~~l~---------~~~~~~vLdvG-~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (241)
+...+.+.+.+. .+++..|+=+| =|+|-++ + +-.++.++..+. ...
T Consensus 76 KiV~eELv~llG~~~~~~~l~~~~P~vImmvGLQGsGKTT---t------------~~KLA~~lkk~~---------~kv 131 (451)
T COG0541 76 KIVYEELVKLLGGENSELNLAKKPPTVILMVGLQGSGKTT---T------------AGKLAKYLKKKG---------KKV 131 (451)
T ss_pred HHHHHHHHHHhCCCCcccccCCCCCeEEEEEeccCCChHh---H------------HHHHHHHHHHcC---------Cce
Confidence 344566666655 24567899999 4888777 1 223344554421 233
Q ss_pred CceeecCC-hHhHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCC----------CCC
Q psy1420 99 FPNQIDIP-NPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPI----------ESD 167 (241)
Q Consensus 99 ~~~~~D~s-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~----------~~~ 167 (241)
-++++|.- |.+++.++.... +.++ .++..+....|. ...
T Consensus 132 llVaaD~~RpAA~eQL~~La~-------------------------q~~v-----~~f~~~~~~~Pv~Iak~al~~ak~~ 181 (451)
T COG0541 132 LLVAADTYRPAAIEQLKQLAE-------------------------QVGV-----PFFGSGTEKDPVEIAKAALEKAKEE 181 (451)
T ss_pred EEEecccCChHHHHHHHHHHH-------------------------HcCC-----ceecCCCCCCHHHHHHHHHHHHHHc
Confidence 46666754 556777777666 4433 344433333331 145
Q ss_pred ceeEEeeeehhh-cc-ccHHHHHHHHHHhccCCcEEEEEecCH
Q psy1420 168 SYSAYTIAFGIR-NV-TRIDKALSEAYRVLKPGGRFLCLEFSH 208 (241)
Q Consensus 168 ~~D~V~~~~~l~-~~-~~~~~~l~~~~~~LkpgG~l~i~~~~~ 208 (241)
.+|+|++--.=+ ++ +..-..+.++++.++|.-.|++++...
T Consensus 182 ~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~ 224 (451)
T COG0541 182 GYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMI 224 (451)
T ss_pred CCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEeccc
Confidence 689988654333 33 245688889999999999999988555
No 340
>PF01206 TusA: Sulfurtransferase TusA; InterPro: IPR001455 SirA functions as a response regulator as part of a two-component system, where BarA is the sensor kinase. This system increases the expression of virulence genes and decreases the expression of motility genes []. BarA phosphorylates SirA, thereby activating the protein. Phosphorylated SirA directly activates virulence expression by interacting with hilA and hilC promoters, while repressing the flagellar regulon indirectly by binding to the csrB promoter, which in turn affects flagellar gene expression. Orthologues of SirA from Salmonella spp. can be found throughout proteobacteria, such as GacA in Psuedomonas spp., VarA in Vibrio cholerae, ExpA in Erwinia carotovora, LetA in Legionella pneumophila, and UvrY in Escherichia coli []. A sensor kinase for SirA is present in each of these organisms as well; the sensor kinase is known as BarA in E. coli and Salmonella spp., but has different names in other genera. In different species, SirA/BarA orthologues are required for virulence gene expression, exoenzyme and antibiotic production, motility, and biofilm formation. The structure of SirA consists of an alpha/beta sandwich with a beta-alpha-beta-alpha-beta(2) fold, comprising a mixed four-stranded beta-sheet stacked against two alpha-helices, both of which are nearly parallel to the strands of the beta-sheet []. Several uncharacterised bacterial proteins (73 to 81 amino-acid residues in length) that contain a well-conserved region in their N-terminal region show structural similarity to the SirA protein, including the E. coli protein YedF (P0AA31 from SWISSPROT), and other members of the UPF0033 family.; GO: 0016783 sulfurtransferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 3LVJ_D 3LVK_B 1DCJ_A 3HZ7_A 1JDQ_A 1JE3_A 1PAV_A.
Probab=55.56 E-value=62 Score=21.86 Aligned_cols=50 Identities=24% Similarity=0.260 Sum_probs=34.1
Q ss_pred HHHHHHHhccCCcEEEEEecCH---HHHHHHHHHCCCceEEEEEecCceeEEEe
Q psy1420 187 ALSEAYRVLKPGGRFLCLEFSH---EEFKSMIESAGFQYVTYENLTFGVVAIHS 237 (241)
Q Consensus 187 ~l~~~~~~LkpgG~l~i~~~~~---~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~ 237 (241)
.+....+-|++|..+.+..-.. ..+..++++.|+.++..+. ..|...+++
T Consensus 16 ~~~~~l~~l~~G~~l~v~~d~~~~~~di~~~~~~~g~~~~~~~~-~~~~~~i~I 68 (70)
T PF01206_consen 16 KAKKALKELPPGEVLEVLVDDPAAVEDIPRWCEENGYEVVEVEE-EGGEYRILI 68 (70)
T ss_dssp HHHHHHHTSGTT-EEEEEESSTTHHHHHHHHHHHHTEEEEEEEE-SSSSEEEEE
T ss_pred HHHHHHHhcCCCCEEEEEECCccHHHHHHHHHHHCCCEEEEEEE-eCCEEEEEE
Confidence 3455556677888776544333 8899999999999888877 455555543
No 341
>PF06557 DUF1122: Protein of unknown function (DUF1122); InterPro: IPR008304 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.; PDB: 2ARH_C.
Probab=53.84 E-value=25 Score=28.96 Aligned_cols=40 Identities=25% Similarity=0.407 Sum_probs=24.6
Q ss_pred HHHHHHHHHhccCCcEEEEEecCH---------------HHHHHHHHHCCCceEE
Q psy1420 185 DKALSEAYRVLKPGGRFLCLEFSH---------------EEFKSMIESAGFQYVT 224 (241)
Q Consensus 185 ~~~l~~~~~~LkpgG~l~i~~~~~---------------~~~~~~l~~~Gf~~~~ 224 (241)
..++..+++.|.|||++++.=... ..+-..|.++||++.+
T Consensus 66 ~~l~~~~~~~l~pg~~lfVeY~~D~eT~~~L~~G~pp~~TrLG~~Ll~~GFtwfK 120 (170)
T PF06557_consen 66 DELYKLFSRYLEPGGRLFVEYVEDRETRRQLQRGVPPAETRLGFSLLKAGFTWFK 120 (170)
T ss_dssp HHHHHHHHTT----SEEEEE-TT-HHHHHHHHTT--GGGSHHHHHHHTTT--EEE
T ss_pred HHHHHHHHHHhhhcCeEEEEEecCHHHHHHHHcCCCcccchhHHHHHhCCcEEEe
Confidence 578888999999999999854333 4556677899998764
No 342
>KOG3924|consensus
Probab=53.76 E-value=43 Score=31.53 Aligned_cols=28 Identities=18% Similarity=0.258 Sum_probs=23.8
Q ss_pred HHHHHHhhcCCCCCCeEEEEecCCCcch
Q psy1420 31 WKDIFIDRLGPTHDTKLLDVAGGTDPLA 58 (241)
Q Consensus 31 ~~~~~~~~l~~~~~~~vLdvG~G~G~~~ 58 (241)
....+.+.+..++++...|+|+|-|...
T Consensus 180 ql~si~dEl~~g~~D~F~DLGSGVGqlv 207 (419)
T KOG3924|consen 180 QLRSIVDELKLGPADVFMDLGSGVGQLV 207 (419)
T ss_pred HHHHHHHHhccCCCCcccCCCcccchhh
Confidence 3566777788899999999999999987
No 343
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=52.22 E-value=98 Score=27.97 Aligned_cols=113 Identities=18% Similarity=0.192 Sum_probs=67.7
Q ss_pred CCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCCc
Q psy1420 44 DTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIE 123 (241)
Q Consensus 44 ~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~ 123 (241)
..+++|+=||.|... .-+-. ....-+.++|+++..++.-+.+..
T Consensus 3 ~~~~idLFsG~GG~~-------------lGf~~------------------agf~~~~a~Eid~~a~~ty~~n~~----- 46 (328)
T COG0270 3 KMKVIDLFAGIGGLS-------------LGFEE------------------AGFEIVFANEIDPPAVATYKANFP----- 46 (328)
T ss_pred CceEEeeccCCchHH-------------HHHHh------------------cCCeEEEEEecCHHHHHHHHHhCC-----
Confidence 357999999999887 22222 123457889999999988877754
Q ss_pred cccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCC--CC-ceeEEeeeehhhc---------cccH----HHH
Q psy1420 124 SDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIE--SD-SYSAYTIAFGIRN---------VTRI----DKA 187 (241)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~-~~D~V~~~~~l~~---------~~~~----~~~ 187 (241)
...+...|+.+.... .. .+|+++.+.-... ..|+ -..
T Consensus 47 ---------------------------~~~~~~~di~~~~~~~~~~~~~DvligGpPCQ~FS~aG~r~~~~D~R~~L~~~ 99 (328)
T COG0270 47 ---------------------------HGDIILGDIKELDGEALRKSDVDVLIGGPPCQDFSIAGKRRGYDDPRGSLFLE 99 (328)
T ss_pred ---------------------------CCceeechHhhcChhhccccCCCEEEeCCCCcchhhcCcccCCcCccceeeHH
Confidence 122334444433211 11 5788876543322 1222 234
Q ss_pred HHHHHHhccCCcEEEEEecCH----------HHHHHHHHHCCCc
Q psy1420 188 LSEAYRVLKPGGRFLCLEFSH----------EEFKSMIESAGFQ 221 (241)
Q Consensus 188 l~~~~~~LkpgG~l~i~~~~~----------~~~~~~l~~~Gf~ 221 (241)
+.++...++| .+++.+--+ +.+.+.|++.||.
T Consensus 100 ~~r~I~~~~P--~~fv~ENV~gl~~~~~~~~~~i~~~L~~~GY~ 141 (328)
T COG0270 100 FIRLIEQLRP--KFFVLENVKGLLSSKGQTFDEIKKELEELGYG 141 (328)
T ss_pred HHHHHHhhCC--CEEEEecCchHHhcCchHHHHHHHHHHHcCCc
Confidence 4556667778 455544222 7888899999997
No 344
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=50.88 E-value=24 Score=34.27 Aligned_cols=36 Identities=11% Similarity=0.013 Sum_probs=27.3
Q ss_pred CceeEEeeeehhhccccHHHHHHHHHHhccCCcEEE
Q psy1420 167 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFL 202 (241)
Q Consensus 167 ~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~ 202 (241)
..+|+|+.+-.+...+.|.-..+++.+.+|||+.++
T Consensus 246 ~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIV 281 (511)
T TIGR00561 246 KEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIV 281 (511)
T ss_pred CCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEE
Confidence 458999876655555566667788899999999876
No 345
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=50.34 E-value=61 Score=28.56 Aligned_cols=32 Identities=31% Similarity=0.513 Sum_probs=22.8
Q ss_pred CceeEEeeeehhhccccHHHHHHHHHHhccCCcEEEEE
Q psy1420 167 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCL 204 (241)
Q Consensus 167 ~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~ 204 (241)
..+|+++.+.+. ...++.+.+.|+++|+++..
T Consensus 230 ~~vd~vld~~g~------~~~~~~~~~~L~~~G~~v~~ 261 (339)
T cd08232 230 GDFDVVFEASGA------PAALASALRVVRPGGTVVQV 261 (339)
T ss_pred CCccEEEECCCC------HHHHHHHHHHHhcCCEEEEE
Confidence 358999864331 23567788999999998864
No 346
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=49.83 E-value=1.3e+02 Score=28.99 Aligned_cols=60 Identities=15% Similarity=0.119 Sum_probs=37.3
Q ss_pred HHHHhhcCCC--CCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhH
Q psy1420 33 DIFIDRLGPT--HDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRL 110 (241)
Q Consensus 33 ~~~~~~l~~~--~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~ 110 (241)
+.+.+.+.+. |+..+.|..||+|... ..... .+. ..+ ....+++.+..+.+.
T Consensus 205 ~l~~~~~~~~~dp~~~~~Dp~~Gsg~~L-------------~~~~~----~~~-~~q--------e~~~~~gqe~~~~~~ 258 (501)
T TIGR00497 205 ELLARIAIGKKDTVDDVYDMACGSGSLL-------------LQVIK----VLG-EKT--------SLVSYYGQEINHTTY 258 (501)
T ss_pred HHHHHHhccCCCCCCcccccccchHHHH-------------HHHHH----Hhc-ccc--------cceeEEEEeCchHHH
Confidence 4444444443 5578999999999866 22211 111 000 235689999999998
Q ss_pred HHHHHHHh
Q psy1420 111 RFLEANAE 118 (241)
Q Consensus 111 ~~~~~~~~ 118 (241)
..+..+..
T Consensus 259 ~~a~mnm~ 266 (501)
T TIGR00497 259 NLCRMNMI 266 (501)
T ss_pred HHHHHHHH
Confidence 88887643
No 347
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=49.74 E-value=32 Score=32.10 Aligned_cols=52 Identities=12% Similarity=0.115 Sum_probs=35.6
Q ss_pred HHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHH
Q psy1420 35 FIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLE 114 (241)
Q Consensus 35 ~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~ 114 (241)
-.+.++..++.+||-|.+|..+.. . ++.. ...+++++|.||..+.-.+
T Consensus 27 D~~aL~i~~~d~vl~ItSaG~N~L-----------------~----yL~~-----------~P~~I~aVDlNp~Q~aLle 74 (380)
T PF11899_consen 27 DMEALNIGPDDRVLTITSAGCNAL-----------------D----YLLA-----------GPKRIHAVDLNPAQNALLE 74 (380)
T ss_pred HHHHhCCCCCCeEEEEccCCchHH-----------------H----HHhc-----------CCceEEEEeCCHHHHHHHH
Confidence 345667789999999976554433 2 2222 2468999999999887766
Q ss_pred HHHh
Q psy1420 115 ANAE 118 (241)
Q Consensus 115 ~~~~ 118 (241)
-+..
T Consensus 75 LKlA 78 (380)
T PF11899_consen 75 LKLA 78 (380)
T ss_pred HHHH
Confidence 5544
No 348
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=49.18 E-value=31 Score=32.31 Aligned_cols=50 Identities=8% Similarity=-0.026 Sum_probs=33.8
Q ss_pred cCCCceeecCChHhHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCC---CCceeEE
Q psy1420 96 IRQFPNQIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIE---SDSYSAY 172 (241)
Q Consensus 96 ~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~---~~~~D~V 172 (241)
...+++..|.++...+.+..... .+++.+..|+...+-. -..+|+|
T Consensus 24 ~d~~V~iAdRs~~~~~~i~~~~~-------------------------------~~v~~~~vD~~d~~al~~li~~~d~V 72 (389)
T COG1748 24 GDGEVTIADRSKEKCARIAELIG-------------------------------GKVEALQVDAADVDALVALIKDFDLV 72 (389)
T ss_pred CCceEEEEeCCHHHHHHHHhhcc-------------------------------ccceeEEecccChHHHHHHHhcCCEE
Confidence 34789999999888877765543 2577888888776311 1235888
Q ss_pred eeee
Q psy1420 173 TIAF 176 (241)
Q Consensus 173 ~~~~ 176 (241)
+...
T Consensus 73 In~~ 76 (389)
T COG1748 73 INAA 76 (389)
T ss_pred EEeC
Confidence 8543
No 349
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=47.60 E-value=8.6 Score=33.61 Aligned_cols=55 Identities=16% Similarity=0.168 Sum_probs=33.2
Q ss_pred CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCc
Q psy1420 42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFP 100 (241)
Q Consensus 42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (241)
+||++++-+..+..... +...++++|+...+++++... +....|.||.++....+
T Consensus 173 kpGG~l~i~d~~~~~~~---~~~~~~~~~~~~~~~~~~~~~-~~~~~y~~l~~s~~~f~ 227 (261)
T PLN02233 173 KPGSRVSILDFNKSTQP---FTTSMQEWMIDNVVVPVATGY-GLAKEYEYLKSSINEYL 227 (261)
T ss_pred CcCcEEEEEECCCCCcH---HHHHHHHHHHhhhhhHHHHHh-CChHHHHHHHHHHHhcC
Confidence 56666544433333333 567788888887776666443 34456888887755544
No 350
>cd03423 SirA SirA (also known as UvrY, and YhhP) belongs to a family of two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is thought to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=47.37 E-value=89 Score=21.28 Aligned_cols=50 Identities=18% Similarity=0.220 Sum_probs=34.9
Q ss_pred HHHHHHHhccCCcEEEEEecCH---HHHHHHHHHCCCceEEEEEecCceeEEEe
Q psy1420 187 ALSEAYRVLKPGGRFLCLEFSH---EEFKSMIESAGFQYVTYENLTFGVVAIHS 237 (241)
Q Consensus 187 ~l~~~~~~LkpgG~l~i~~~~~---~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~ 237 (241)
.+....+-+++|+.+.+..-.. +.+..++++.|++++..+. ..|...+++
T Consensus 15 ~~k~~l~~l~~G~~l~V~~dd~~s~~di~~~~~~~g~~~~~~~~-~~~~~~~~I 67 (69)
T cd03423 15 MLHKKVRKMKPGDTLLVLATDPSTTRDIPKFCTFLGHELLAQET-EDEPYRYLI 67 (69)
T ss_pred HHHHHHHcCCCCCEEEEEeCCCchHHHHHHHHHHcCCEEEEEEE-cCCEEEEEE
Confidence 3445556678888766643222 8999999999999988776 456555543
No 351
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=47.25 E-value=98 Score=27.77 Aligned_cols=33 Identities=12% Similarity=0.088 Sum_probs=22.6
Q ss_pred CceeEEeeeehhhccccHHHHHHHHHHhccCCcEEEEEe
Q psy1420 167 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 205 (241)
Q Consensus 167 ~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 205 (241)
..+|+|+.+-+- ...+....+.+++||++++.-
T Consensus 244 ~g~d~vid~~g~------~~~~~~~~~~~~~~G~iv~~G 276 (358)
T TIGR03451 244 FGADVVIDAVGR------PETYKQAFYARDLAGTVVLVG 276 (358)
T ss_pred CCCCEEEECCCC------HHHHHHHHHHhccCCEEEEEC
Confidence 358988854331 235666778899999988754
No 352
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=47.18 E-value=70 Score=27.91 Aligned_cols=114 Identities=14% Similarity=0.114 Sum_probs=63.6
Q ss_pred eEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCCccc
Q psy1420 46 KLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIESD 125 (241)
Q Consensus 46 ~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~ 125 (241)
+++|+=||.|..+ .-+-. .....+.++|+++.+.+..+.+..
T Consensus 2 ~~~dlFsG~Gg~~-------------~g~~~------------------ag~~~~~a~e~~~~a~~~y~~N~~------- 43 (335)
T PF00145_consen 2 KVIDLFSGIGGFS-------------LGLEQ------------------AGFEVVWAVEIDPDACETYKANFP------- 43 (335)
T ss_dssp EEEEET-TTTHHH-------------HHHHH------------------TTEEEEEEEESSHHHHHHHHHHHT-------
T ss_pred cEEEEccCccHHH-------------HHHHh------------------cCcEEEEEeecCHHHHHhhhhccc-------
Confidence 7899999999887 22222 123468899999998888877652
Q ss_pred cccccceecceeeeeeccccCCCCCCeeEEecccCCCC---CCCCceeEEeeeehhhc---------cccH----HHHHH
Q psy1420 126 SYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELP---IESDSYSAYTIAFGIRN---------VTRI----DKALS 189 (241)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~~D~V~~~~~l~~---------~~~~----~~~l~ 189 (241)
.....|+..+. ++. .+|+++.+.-... ..+. -..+-
T Consensus 44 ---------------------------~~~~~Di~~~~~~~l~~-~~D~l~ggpPCQ~fS~ag~~~~~~d~r~~L~~~~~ 95 (335)
T PF00145_consen 44 ---------------------------EVICGDITEIDPSDLPK-DVDLLIGGPPCQGFSIAGKRKGFDDPRNSLFFEFL 95 (335)
T ss_dssp ---------------------------EEEESHGGGCHHHHHHH-T-SEEEEE---TTTSTTSTHHCCCCHTTSHHHHHH
T ss_pred ---------------------------ccccccccccccccccc-cceEEEeccCCceEeccccccccccccchhhHHHH
Confidence 33455555442 222 4788776543221 1222 22334
Q ss_pred HHHHhccCCcEEEEEecCH-----------HHHHHHHHHCCCceEEEEEe
Q psy1420 190 EAYRVLKPGGRFLCLEFSH-----------EEFKSMIESAGFQYVTYENL 228 (241)
Q Consensus 190 ~~~~~LkpgG~l~i~~~~~-----------~~~~~~l~~~Gf~~~~~~~~ 228 (241)
++.+.++|.-. +++-.. +.+.+.|++.||.+ ....+
T Consensus 96 ~~v~~~~Pk~~--~~ENV~~l~~~~~~~~~~~i~~~l~~lGY~v-~~~vl 142 (335)
T PF00145_consen 96 RIVKELKPKYF--LLENVPGLLSSKNGEVFKEILEELEELGYNV-QWRVL 142 (335)
T ss_dssp HHHHHHS-SEE--EEEEEGGGGTGGGHHHHHHHHHHHHHTTEEE-EEEEE
T ss_pred HHHhhccceEE--Eecccceeeccccccccccccccccccceee-hhccc
Confidence 44456678533 334211 77788889999874 34444
No 353
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=44.98 E-value=1.2e+02 Score=22.15 Aligned_cols=88 Identities=17% Similarity=0.115 Sum_probs=51.9
Q ss_pred CCceeecCChHhHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCC----CCCCceeEEe
Q psy1420 98 QFPNQIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELP----IESDSYSAYT 173 (241)
Q Consensus 98 ~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~~D~V~ 173 (241)
..+..+|.++...+.+... .+.++.+|..+.. ..-.+.|.++
T Consensus 22 ~~vvvid~d~~~~~~~~~~----------------------------------~~~~i~gd~~~~~~l~~a~i~~a~~vv 67 (116)
T PF02254_consen 22 IDVVVIDRDPERVEELREE----------------------------------GVEVIYGDATDPEVLERAGIEKADAVV 67 (116)
T ss_dssp SEEEEEESSHHHHHHHHHT----------------------------------TSEEEES-TTSHHHHHHTTGGCESEEE
T ss_pred CEEEEEECCcHHHHHHHhc----------------------------------ccccccccchhhhHHhhcCccccCEEE
Confidence 4699999999887776533 2457788877642 1224677777
Q ss_pred eeehhhccccHHHHHHHHHHhccCCcEEEEEecCHHHHHHHHHHCCCceE
Q psy1420 174 IAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHEEFKSMIESAGFQYV 223 (241)
Q Consensus 174 ~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~l~~~Gf~~~ 223 (241)
+... -......+....+-+.|...+++.. ...+..+.+++.|...+
T Consensus 68 ~~~~---~d~~n~~~~~~~r~~~~~~~ii~~~-~~~~~~~~l~~~g~d~v 113 (116)
T PF02254_consen 68 ILTD---DDEENLLIALLARELNPDIRIIARV-NDPENAELLRQAGADHV 113 (116)
T ss_dssp EESS---SHHHHHHHHHHHHHHTTTSEEEEEE-SSHHHHHHHHHTT-SEE
T ss_pred EccC---CHHHHHHHHHHHHHHCCCCeEEEEE-CCHHHHHHHHHCCcCEE
Confidence 5432 1112233344456667887776644 44555777888887643
No 354
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=44.35 E-value=54 Score=28.84 Aligned_cols=32 Identities=22% Similarity=0.210 Sum_probs=22.4
Q ss_pred CceeEEeeeehhhccccHHHHHHHHHHhccCCcEEEEEe
Q psy1420 167 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 205 (241)
Q Consensus 167 ~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 205 (241)
+.+|+|+.+.+- ..+....++|+++|+++...
T Consensus 206 ~gvdvv~d~~G~-------~~~~~~~~~l~~~G~iv~~G 237 (325)
T TIGR02825 206 DGYDCYFDNVGG-------EFSNTVIGQMKKFGRIAICG 237 (325)
T ss_pred CCeEEEEECCCH-------HHHHHHHHHhCcCcEEEEec
Confidence 468999854321 23567788899999998653
No 355
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=43.93 E-value=74 Score=28.50 Aligned_cols=35 Identities=14% Similarity=0.180 Sum_probs=24.2
Q ss_pred ceeEEeeeehhhccccHHHHHHHHHHhccCCcEEEEEe
Q psy1420 168 SYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 205 (241)
Q Consensus 168 ~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 205 (241)
.+|+|+..-+-. .....+....++|+++|++++.-
T Consensus 222 g~d~viD~~G~~---~~~~~~~~~~~~l~~~G~iv~~G 256 (341)
T cd08237 222 AVDHAFECVGGR---GSQSAINQIIDYIRPQGTIGLMG 256 (341)
T ss_pred CCcEEEECCCCC---ccHHHHHHHHHhCcCCcEEEEEe
Confidence 489988644311 12356788889999999988754
No 356
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=43.48 E-value=1.5e+02 Score=26.30 Aligned_cols=33 Identities=15% Similarity=0.136 Sum_probs=21.9
Q ss_pred ceeEEeeeehhhccccHHHHHHHHHHhccCCcEEEEEec
Q psy1420 168 SYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEF 206 (241)
Q Consensus 168 ~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 206 (241)
.+|+++..-+. ...+....+.|++||++++.-.
T Consensus 223 ~~d~~i~~~~~------~~~~~~~~~~l~~~G~~v~~G~ 255 (329)
T TIGR02822 223 PLDAAILFAPA------GGLVPPALEALDRGGVLAVAGI 255 (329)
T ss_pred cceEEEECCCc------HHHHHHHHHhhCCCcEEEEEec
Confidence 46766532221 1367788889999999987543
No 357
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=42.57 E-value=1.8e+02 Score=26.19 Aligned_cols=31 Identities=23% Similarity=0.263 Sum_probs=22.3
Q ss_pred CceeEEeeeehhhccccHHHHHHHHHHhccCCcEEEEE
Q psy1420 167 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCL 204 (241)
Q Consensus 167 ~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~ 204 (241)
+.+|+|+.+.+ ...+..+.++|+++|++++.
T Consensus 227 ~gvD~v~d~vG-------~~~~~~~~~~l~~~G~iv~~ 257 (348)
T PLN03154 227 EGIDIYFDNVG-------GDMLDAALLNMKIHGRIAVC 257 (348)
T ss_pred CCcEEEEECCC-------HHHHHHHHHHhccCCEEEEE
Confidence 36899986433 13567788889999998864
No 358
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=42.36 E-value=2.3e+02 Score=25.38 Aligned_cols=20 Identities=20% Similarity=0.019 Sum_probs=15.6
Q ss_pred CceeecCChHhHHHHHHHHh
Q psy1420 99 FPNQIDIPNPRLRFLEANAE 118 (241)
Q Consensus 99 ~~~~~D~s~~~~~~~~~~~~ 118 (241)
-+.++|+++.+.+..+.+..
T Consensus 22 ~~~a~e~~~~a~~ty~~N~~ 41 (315)
T TIGR00675 22 CVFASEIDKYAQKTYEANFG 41 (315)
T ss_pred EEEEEeCCHHHHHHHHHhCC
Confidence 46789999998888777654
No 359
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=42.36 E-value=2.5e+02 Score=25.12 Aligned_cols=56 Identities=14% Similarity=0.124 Sum_probs=37.2
Q ss_pred CCeeEEecccCCCCC----C-----CCceeEEeeeehhhcccc--HHHHHHHHHHhccCCcEEEEEe
Q psy1420 150 PRLRFLEANAEELPI----E-----SDSYSAYTIAFGIRNVTR--IDKALSEAYRVLKPGGRFLCLE 205 (241)
Q Consensus 150 ~~~~~~~~d~~~~~~----~-----~~~~D~V~~~~~l~~~~~--~~~~l~~~~~~LkpgG~l~i~~ 205 (241)
.+.+.+..|+.+... . ...--++++-..+.+++. .+++++.+.....||-.++...
T Consensus 143 ~~~~~Va~Dl~~~dw~~~L~~~G~d~~~pt~~iaEGLl~YL~~~~v~~ll~~I~~~~~~gS~~~~~~ 209 (297)
T COG3315 143 AHRRLVAVDLREDDWPQALAAAGFDRSRPTLWIAEGLLMYLPEEAVDRLLSRIAALSAPGSRVAFDY 209 (297)
T ss_pred ceEEEEeccccccchHHHHHhcCCCcCCCeEEEeccccccCCHHHHHHHHHHHHHhCCCCceEEEec
Confidence 478889999885431 1 223344555566666654 4688999999988887777643
No 360
>cd03420 SirA_RHOD_Pry_redox SirA_RHOD_Pry_redox. SirA-like domain located within a multidomain protein of unknown function. Other domains include RHOD (rhodanese homology domain), and Pry_redox (pyridine nucleotide-disulphide oxidoreductase) as well as a C-terminal domain that corresponds to COG2210. This fold is referred to as a two-layered alpha/beta sandwich, structurally similar to that of translation initiation factor 3.
Probab=42.28 E-value=1.1e+02 Score=20.86 Aligned_cols=50 Identities=16% Similarity=0.151 Sum_probs=35.4
Q ss_pred HHHHHHHHhccCCcEEEEEecCH---HHHHHHHHHCCCceEEEEEecCceeEEE
Q psy1420 186 KALSEAYRVLKPGGRFLCLEFSH---EEFKSMIESAGFQYVTYENLTFGVVAIH 236 (241)
Q Consensus 186 ~~l~~~~~~LkpgG~l~i~~~~~---~~~~~~l~~~Gf~~~~~~~~~~~~~~~~ 236 (241)
--++...+-+++|+.|.+..-.. ..+..+.++.|++++..+.. .|...++
T Consensus 14 l~~kkal~~l~~G~~l~V~~d~~~a~~di~~~~~~~G~~~~~~~~~-~~~~~~~ 66 (69)
T cd03420 14 LKLKKEIDKLQDGEQLEVKASDPGFARDAQAWCKSTGNTLISLETE-KGKVKAV 66 (69)
T ss_pred HHHHHHHHcCCCCCEEEEEECCccHHHHHHHHHHHcCCEEEEEEec-CCEEEEE
Confidence 33455666778999776654333 89999999999999877763 5555544
No 361
>KOG0780|consensus
Probab=40.90 E-value=3.3e+02 Score=25.99 Aligned_cols=64 Identities=11% Similarity=0.234 Sum_probs=41.6
Q ss_pred CCCceeEEeeeehhhcccc--HHHHHHHHHHhccCCcEEEEEecCH-----HHHHHHHHHCCCceEEEEEe
Q psy1420 165 ESDSYSAYTIAFGIRNVTR--IDKALSEAYRVLKPGGRFLCLEFSH-----EEFKSMIESAGFQYVTYENL 228 (241)
Q Consensus 165 ~~~~~D~V~~~~~l~~~~~--~~~~l~~~~~~LkpgG~l~i~~~~~-----~~~~~~l~~~Gf~~~~~~~~ 228 (241)
..+.||+|++--+=+|-.+ .-..+..+.+.++|+-.+++.+.+. +.-+..-+..++.-+-+..+
T Consensus 180 Kke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa~aFk~~vdvg~vIlTKl 250 (483)
T KOG0780|consen 180 KKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQARAFKETVDVGAVILTKL 250 (483)
T ss_pred HhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHHHHHHHHhhccceEEEEec
Confidence 3578999998765555433 3467778888999999999998776 22223333445544444444
No 362
>PRK00299 sulfur transfer protein SirA; Reviewed
Probab=40.75 E-value=1.3e+02 Score=21.31 Aligned_cols=54 Identities=11% Similarity=0.070 Sum_probs=37.6
Q ss_pred HHHHHHHHHHhccCCcEEEEEecCH---HHHHHHHHHCCCceEEEEEecCceeEEEee
Q psy1420 184 IDKALSEAYRVLKPGGRFLCLEFSH---EEFKSMIESAGFQYVTYENLTFGVVAIHSG 238 (241)
Q Consensus 184 ~~~~l~~~~~~LkpgG~l~i~~~~~---~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~ 238 (241)
|.--++...+-+++|+.+.+..-.. ..+..+.++.|++++..+. ..|...+.+-
T Consensus 22 Pll~~kk~l~~l~~G~~l~V~~dd~~~~~di~~~~~~~G~~~~~~~~-~~g~~~~~I~ 78 (81)
T PRK00299 22 PVMMVRKTVRNMQPGETLLIIADDPATTRDIPSFCRFMDHELLAQET-EQLPYRYLIR 78 (81)
T ss_pred HHHHHHHHHHcCCCCCEEEEEeCCccHHHHHHHHHHHcCCEEEEEEe-cCCEEEEEEE
Confidence 3344566667788999877654333 8999999999999987655 3566555543
No 363
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=40.45 E-value=59 Score=28.64 Aligned_cols=33 Identities=24% Similarity=0.243 Sum_probs=23.5
Q ss_pred CceeEEeeeehhhccccHHHHHHHHHHhccCCcEEEEEe
Q psy1420 167 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 205 (241)
Q Consensus 167 ~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 205 (241)
..+|+|+.+.+- ...++.+.+.|+++|++++.-
T Consensus 199 ~g~Dvvid~~G~------~~~~~~~~~~l~~~G~iv~~G 231 (308)
T TIGR01202 199 RDYRAIYDASGD------PSLIDTLVRRLAKGGEIVLAG 231 (308)
T ss_pred CCCCEEEECCCC------HHHHHHHHHhhhcCcEEEEEe
Confidence 458998865432 235677788899999988754
No 364
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=39.49 E-value=77 Score=23.58 Aligned_cols=35 Identities=26% Similarity=0.467 Sum_probs=26.9
Q ss_pred CceeEEeeeehhhccccHHHHHHHHHHhccCCcEEEEEecC
Q psy1420 167 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFS 207 (241)
Q Consensus 167 ~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 207 (241)
..+|+|+.+.+- ...++...++++|+|++.+....
T Consensus 57 ~~~d~vid~~g~------~~~~~~~~~~l~~~G~~v~vg~~ 91 (130)
T PF00107_consen 57 RGVDVVIDCVGS------GDTLQEAIKLLRPGGRIVVVGVY 91 (130)
T ss_dssp SSEEEEEESSSS------HHHHHHHHHHEEEEEEEEEESST
T ss_pred ccceEEEEecCc------HHHHHHHHHHhccCCEEEEEEcc
Confidence 479999865431 36788899999999999987543
No 365
>PF06016 Reovirus_L2: Reovirus core-spike protein lambda-2 (L2); InterPro: IPR010311 This family consists of several Reovirus core-spike protein lambda-2 (L2) sequences. The reovirus L2 genome segment encodes the core spike protein lambda-2, which mediates enzymatic reactions in 5' capping of the viral plus-strand transcripts [].; GO: 0004482 mRNA (guanine-N7-)-methyltransferase activity, 0004484 mRNA guanylyltransferase activity, 0005524 ATP binding, 0006370 mRNA capping, 0019028 viral capsid; PDB: 1EJ6_A 3IYL_W 3K1Q_A.
Probab=38.55 E-value=27 Score=37.34 Aligned_cols=51 Identities=10% Similarity=0.110 Sum_probs=34.0
Q ss_pred CCeeEEecccCCCCCC-CCceeEEeeeehhhc-----cccHHHHHHHHHHhccCCcE
Q psy1420 150 PRLRFLEANAEELPIE-SDSYSAYTIAFGIRN-----VTRIDKALSEAYRVLKPGGR 200 (241)
Q Consensus 150 ~~~~~~~~d~~~~~~~-~~~~D~V~~~~~l~~-----~~~~~~~l~~~~~~LkpgG~ 200 (241)
-...+++.|....... ..++|.+.|.+.|.. -.+....++.+.+.+++.|.
T Consensus 864 t~T~y~~~DYl~~~~~~~~~~D~vtailSLGAAaA~a~~tl~~~l~~~l~~~~~~~~ 920 (1289)
T PF06016_consen 864 TQTQYIQADYLSDAWWNGTPFDAVTAILSLGAAAASANVTLDAGLQQFLSQCVQANV 920 (1289)
T ss_dssp TTEEEEES-TTSCCGGCC---SEEEECTCHHHHHHHCT--HHHHHHHHHHHHHCTT-
T ss_pred hcceeeeeccccceeEecCCCCEEEEEeeehhhhhcCCCcHHHHHHHHHHHHHhCCc
Confidence 3578999998876543 457999999988863 34678888888888887764
No 366
>PF09630 DUF2024: Domain of unknown function (DUF2024); InterPro: IPR018592 This protein of 86 residues is expressed in bacteria. It consists of two alpha helices and four beta strands. Its function is unknown.; PDB: 2HFQ_A.
Probab=37.98 E-value=96 Score=22.49 Aligned_cols=51 Identities=22% Similarity=0.275 Sum_probs=33.0
Q ss_pred ceeEEeeeehhhccccHHHHHHHHHHhcc-----------CCcEEEEEecCHHHHHHHHHHCCCceEE
Q psy1420 168 SYSAYTIAFGIRNVTRIDKALSEAYRVLK-----------PGGRFLCLEFSHEEFKSMIESAGFQYVT 224 (241)
Q Consensus 168 ~~D~V~~~~~l~~~~~~~~~l~~~~~~Lk-----------pgG~l~i~~~~~~~~~~~l~~~Gf~~~~ 224 (241)
.||+++ ...+..++++-....|+ ....+.-++...++++..+++.||-+.+
T Consensus 19 HFDViv------~~~d~~~a~~yaK~yL~sig~~~~~vt~~eC~FCHse~A~~ev~~~I~~~Gy~I~~ 80 (81)
T PF09630_consen 19 HFDVIV------DEKDHEKAIEYAKEYLKSIGEEDADVTQKECRFCHSEEAPPEVEQAIKQQGYFIIK 80 (81)
T ss_dssp EEEEEE------S---HHHHHHHHHHHHHHHT---S---TTTEEEEEEEE--HHHHHHHHHHSEEEE-
T ss_pred EEEEEe------cCcCHHHHHHHHHHHHHhcCCCCCccccccCcccccccCCHHHHHHHHHCCeEEEe
Confidence 588887 34455566655555553 4556777777779999999999998765
No 367
>KOG1269|consensus
Probab=37.87 E-value=1.4e+02 Score=27.70 Aligned_cols=53 Identities=23% Similarity=0.289 Sum_probs=39.3
Q ss_pred ehhhccccHHHHHHHHHHhccCCcEEEEEecCH------HHHHHHHHHCCCceEEEEEe
Q psy1420 176 FGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH------EEFKSMIESAGFQYVTYENL 228 (241)
Q Consensus 176 ~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~------~~~~~~l~~~Gf~~~~~~~~ 228 (241)
.++.++++-..++......++|+|.+.+.+.-+ .++...+.+++....+-...
T Consensus 284 ~~~~~~~~~~~~f~~~~~~~~~~~~v~~~e~~~~~p~gs~~~~~~~~~~~~~l~~~~e~ 342 (364)
T KOG1269|consen 284 DTITHWQDKSALFRGRVATLKPGGKVLILEYIRGLPEGSSDFAKYIAQAAVGLKRGGET 342 (364)
T ss_pred hheeecccccHHHHhHhhccCcCceEEehhhcCcCCcCcchHHHHHHhhhhhceecccc
Confidence 445567777888899999999999999877555 67777777777665554444
No 368
>KOG0023|consensus
Probab=37.33 E-value=2.3e+02 Score=26.25 Aligned_cols=46 Identities=20% Similarity=0.111 Sum_probs=31.1
Q ss_pred CCCCCCeEEEEe-cCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHH
Q psy1420 40 GPTHDTKLLDVA-GGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEAN 116 (241)
Q Consensus 40 ~~~~~~~vLdvG-~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~ 116 (241)
+..||.++--+| +|-|..+ .+++..|| .+++++|-++.--+.+.+.
T Consensus 178 g~~pG~~vgI~GlGGLGh~a-------------Vq~AKAMG------------------~rV~vis~~~~kkeea~~~ 224 (360)
T KOG0023|consen 178 GLGPGKWVGIVGLGGLGHMA-------------VQYAKAMG------------------MRVTVISTSSKKKEEAIKS 224 (360)
T ss_pred CCCCCcEEEEecCcccchHH-------------HHHHHHhC------------------cEEEEEeCCchhHHHHHHh
Confidence 345888888888 5677777 66666444 5799999887555555443
No 369
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=37.26 E-value=27 Score=32.23 Aligned_cols=37 Identities=14% Similarity=0.035 Sum_probs=19.4
Q ss_pred ceeEEeeeehhhccccHHHHHHHHHHhccCCcEEEEE
Q psy1420 168 SYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCL 204 (241)
Q Consensus 168 ~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~ 204 (241)
.+|+|+.+-.+...+.+.-.-++..+.++|++.++-+
T Consensus 230 ~aDvVI~a~~~~g~~~p~lit~~~l~~mk~g~vIvDv 266 (370)
T TIGR00518 230 RADLLIGAVLIPGAKAPKLVSNSLVAQMKPGAVIVDV 266 (370)
T ss_pred cCCEEEEccccCCCCCCcCcCHHHHhcCCCCCEEEEE
Confidence 4688886543321112221224455667888877643
No 370
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=36.87 E-value=1.6e+02 Score=25.48 Aligned_cols=31 Identities=19% Similarity=0.184 Sum_probs=22.1
Q ss_pred CceeEEeeeehhhccccHHHHHHHHHHhccCCcEEEEE
Q psy1420 167 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCL 204 (241)
Q Consensus 167 ~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~ 204 (241)
..+|+|+...+ ...+....+.|+++|+++..
T Consensus 210 ~gvd~vld~~g-------~~~~~~~~~~l~~~G~iv~~ 240 (329)
T cd08294 210 DGIDCYFDNVG-------GEFSSTVLSHMNDFGRVAVC 240 (329)
T ss_pred CCcEEEEECCC-------HHHHHHHHHhhccCCEEEEE
Confidence 45899885432 14567788889999998754
No 371
>KOG2360|consensus
Probab=34.51 E-value=93 Score=29.27 Aligned_cols=55 Identities=11% Similarity=0.091 Sum_probs=41.7
Q ss_pred HHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHH
Q psy1420 35 FIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLE 114 (241)
Q Consensus 35 ~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~ 114 (241)
....+++.++..|+|..|-.|.-+ .+...++- ....+++.|.+....+...
T Consensus 205 pA~ll~p~~g~~v~d~caapg~KT-------------sH~a~i~~----------------n~gki~afe~d~~r~~tl~ 255 (413)
T KOG2360|consen 205 PAHLLDPRPGSRVIDTCAAPGNKT-------------SHLAAIMR----------------NQGKIYAFERDAKRAATLR 255 (413)
T ss_pred hhhhcCCCCCCceeeeccccccch-------------hhHHHHhh----------------ccCCcchhhhhhHHHHHHH
Confidence 344567788899999999999988 56555322 3567999999999888877
Q ss_pred HHHh
Q psy1420 115 ANAE 118 (241)
Q Consensus 115 ~~~~ 118 (241)
+...
T Consensus 256 ~~l~ 259 (413)
T KOG2360|consen 256 KLLK 259 (413)
T ss_pred HHHH
Confidence 7766
No 372
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=33.70 E-value=1.9e+02 Score=25.14 Aligned_cols=33 Identities=24% Similarity=0.394 Sum_probs=22.7
Q ss_pred CCceeEEeeeehhhccccHHHHHHHHHHhccCCcEEEEE
Q psy1420 166 SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCL 204 (241)
Q Consensus 166 ~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~ 204 (241)
...+|+++.+.+ ....+..+.+.|+++|+++..
T Consensus 224 ~~~vd~v~~~~~------~~~~~~~~~~~l~~~G~~v~~ 256 (334)
T cd08234 224 PYGFDVVIEATG------VPKTLEQAIEYARRGGTVLVF 256 (334)
T ss_pred CCCCcEEEECCC------ChHHHHHHHHHHhcCCEEEEE
Confidence 346899985422 124567778889999998764
No 373
>TIGR02764 spore_ybaN_pdaB polysaccharide deacetylase family sporulation protein PdaB. This model describes the YbaN protein family, also called PdaB and SpoVIE, of Gram-positive bacteria. Although ybaN null mutants have only a mild sporulation defect, ybaN/ytrI double mutants show drastically reducted sporulation efficiencies. This synthetic defect suggests the role of this sigmaE-controlled gene in sporulation had been masked by functional redundancy. Members of this family are homologous to a characterized polysaccharide deacetylase; the exact function this protein family is unknown.
Probab=33.29 E-value=80 Score=25.74 Aligned_cols=45 Identities=16% Similarity=0.338 Sum_probs=33.0
Q ss_pred ccHHHHHHHHHHhccCCcEEEEEe--cCH------HHHHHHHHHCCCceEEEE
Q psy1420 182 TRIDKALSEAYRVLKPGGRFLCLE--FSH------EEFKSMIESAGFQYVTYE 226 (241)
Q Consensus 182 ~~~~~~l~~~~~~LkpgG~l~i~~--~~~------~~~~~~l~~~Gf~~~~~~ 226 (241)
+.+++..+.+.+.++||.++++-+ ... +.+...+++.||+.+.+.
T Consensus 136 ~~~~~i~~~~~~~~~~g~Iil~Hd~~~~~~t~~~l~~~i~~l~~~Gy~~vtl~ 188 (191)
T TIGR02764 136 PGVESIVDRVVKNTKPGDIILLHASDSAKQTVKALPTIIKKLKEKGYEFVTIS 188 (191)
T ss_pred CCHHHHHHHHHhcCCCCCEEEEeCCCCcHhHHHHHHHHHHHHHHCCCEEEEHH
Confidence 356677888888899988777652 211 677778889999988764
No 374
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=31.97 E-value=1.6e+02 Score=25.35 Aligned_cols=33 Identities=15% Similarity=0.096 Sum_probs=23.1
Q ss_pred CceeEEeeeehhhccccHHHHHHHHHHhccCCcEEEEEe
Q psy1420 167 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 205 (241)
Q Consensus 167 ~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 205 (241)
..+|+|+...+- ...++.+.+.++|+|++++..
T Consensus 186 ~g~d~vid~~G~------~~~~~~~~~~l~~~G~iv~~G 218 (280)
T TIGR03366 186 RGVDVALEFSGA------TAAVRACLESLDVGGTAVLAG 218 (280)
T ss_pred CCCCEEEECCCC------hHHHHHHHHHhcCCCEEEEec
Confidence 358888753321 246777888999999988755
No 375
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=31.81 E-value=73 Score=28.08 Aligned_cols=18 Identities=17% Similarity=0.357 Sum_probs=15.6
Q ss_pred CCCCCeEEEEecCCCcch
Q psy1420 41 PTHDTKLLDVAGGTDPLA 58 (241)
Q Consensus 41 ~~~~~~vLdvG~G~G~~~ 58 (241)
..++..++|+|||.|.++
T Consensus 16 l~~~~~~vEfGaGrg~LS 33 (259)
T PF05206_consen 16 LNPDSCFVEFGAGRGELS 33 (259)
T ss_pred CCCCCEEEEECCCchHHH
Confidence 356778999999999998
No 376
>cd03422 YedF YedF is a bacterial SirA-like protein of unknown function. SirA (also known as UvrY, and YhhP) belongs to a family of a two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=31.51 E-value=1.7e+02 Score=19.90 Aligned_cols=49 Identities=18% Similarity=0.167 Sum_probs=33.5
Q ss_pred HHHHHHHhccCCcEEEEEecCH---HHHHHHHHHCCCceEEEEEecCceeEEE
Q psy1420 187 ALSEAYRVLKPGGRFLCLEFSH---EEFKSMIESAGFQYVTYENLTFGVVAIH 236 (241)
Q Consensus 187 ~l~~~~~~LkpgG~l~i~~~~~---~~~~~~l~~~Gf~~~~~~~~~~~~~~~~ 236 (241)
-.....+-+++|..+.+..-.. ..+..++++.|++++..+.. .|...+.
T Consensus 15 ~~kkal~~l~~G~~l~V~~d~~~s~~ni~~~~~~~g~~v~~~~~~-~~~~~~~ 66 (69)
T cd03422 15 ATLEALPSLKPGEILEVISDCPQSINNIPIDARNHGYKVLAIEQS-GPTIRYL 66 (69)
T ss_pred HHHHHHHcCCCCCEEEEEecCchHHHHHHHHHHHcCCEEEEEEec-CCEEEEE
Confidence 3445556678898766643333 89999999999999876653 3555443
No 377
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=31.51 E-value=1.8e+02 Score=26.29 Aligned_cols=32 Identities=22% Similarity=0.206 Sum_probs=22.1
Q ss_pred ceeEEeeeehhhccccHHHHHHHHHHhccCCcEEEEEe
Q psy1420 168 SYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 205 (241)
Q Consensus 168 ~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 205 (241)
.+|+|+.+.+- ...+....+.++++|++++..
T Consensus 259 g~d~vid~~G~------~~~~~~~~~~l~~~G~iv~~G 290 (371)
T cd08281 259 GVDYAFEMAGS------VPALETAYEITRRGGTTVTAG 290 (371)
T ss_pred CCCEEEECCCC------hHHHHHHHHHHhcCCEEEEEc
Confidence 58998854321 245667778899999987654
No 378
>PRK09548 PTS system ascorbate-specific transporter subunits IICB; Provisional
Probab=31.19 E-value=1.6e+02 Score=29.28 Aligned_cols=32 Identities=9% Similarity=0.098 Sum_probs=21.6
Q ss_pred ccCCCCCCeeEEecccCCCCCCCCceeEEeeeehh
Q psy1420 144 KIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGI 178 (241)
Q Consensus 144 ~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l 178 (241)
+.+++ .++.++++.+.+...+.+|+|+++..+
T Consensus 533 e~GI~---veV~~~~Vsev~s~~~~aDIIVtt~~L 564 (602)
T PRK09548 533 KRGIP---IIMDSCAVNDYKGKLETIDIIVCSKHL 564 (602)
T ss_pred HcCCC---eEEEEechHhCcccCCCCCEEEEcccc
Confidence 45554 567788887776555568999876544
No 379
>PF06897 DUF1269: Protein of unknown function (DUF1269); InterPro: IPR009200 There are currently no experimental data for members of this group or their homologues. However, these proteins are predicted to contain two or more transmembrane segments.
Probab=31.08 E-value=1.4e+02 Score=22.34 Aligned_cols=42 Identities=21% Similarity=0.279 Sum_probs=31.4
Q ss_pred HHHHHHHHHHhccCCcEEEEEecC---HHHHHHHHHHCCCceEEE
Q psy1420 184 IDKALSEAYRVLKPGGRFLCLEFS---HEEFKSMIESAGFQYVTY 225 (241)
Q Consensus 184 ~~~~l~~~~~~LkpgG~l~i~~~~---~~~~~~~l~~~Gf~~~~~ 225 (241)
.+.+++++.+.|+||...++.... .+.+.+.+++.|-++++.
T Consensus 41 ~d~~~~ev~~~L~~GssAl~~lv~~~~~d~v~~~l~~~gg~v~~t 85 (102)
T PF06897_consen 41 DDEFIKEVGEALKPGSSALFLLVDEATEDKVDAALRKFGGKVLRT 85 (102)
T ss_pred CHHHHHHHHhhcCCCceEEEEEeccCCHHHHHHHHHhcCCEEEec
Confidence 457899999999999875554333 378888999988776654
No 380
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=30.19 E-value=3.3e+02 Score=22.88 Aligned_cols=33 Identities=27% Similarity=0.315 Sum_probs=21.9
Q ss_pred CceeEEeeeehhhccccHHHHHHHHHHhccCCcEEEEEe
Q psy1420 167 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 205 (241)
Q Consensus 167 ~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 205 (241)
..+|+++.+.+- ...+....+.|+++|.++...
T Consensus 158 ~~~d~vl~~~~~------~~~~~~~~~~l~~~g~~~~~g 190 (277)
T cd08255 158 RGADVVIEASGS------PSALETALRLLRDRGRVVLVG 190 (277)
T ss_pred CCCCEEEEccCC------hHHHHHHHHHhcCCcEEEEEe
Confidence 458888853221 235667788899999987653
No 381
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=30.12 E-value=2.9e+02 Score=24.33 Aligned_cols=32 Identities=16% Similarity=0.298 Sum_probs=22.4
Q ss_pred CceeEEeeeehhhccccHHHHHHHHHHhccCCcEEEEE
Q psy1420 167 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCL 204 (241)
Q Consensus 167 ~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~ 204 (241)
..+|+|+.+.+- ...+....+.|+++|+++..
T Consensus 233 ~~~d~vld~~g~------~~~~~~~~~~l~~~G~~v~~ 264 (343)
T cd05285 233 KGPDVVIECTGA------ESCIQTAIYATRPGGTVVLV 264 (343)
T ss_pred CCCCEEEECCCC------HHHHHHHHHHhhcCCEEEEE
Confidence 458999864331 23567788899999998764
No 382
>PRK11018 hypothetical protein; Provisional
Probab=29.33 E-value=2e+02 Score=20.13 Aligned_cols=49 Identities=12% Similarity=0.030 Sum_probs=33.4
Q ss_pred HHHHHHhccCCcEEEEEecCH---HHHHHHHHHCCCceEEEEEecCceeEEEe
Q psy1420 188 LSEAYRVLKPGGRFLCLEFSH---EEFKSMIESAGFQYVTYENLTFGVVAIHS 237 (241)
Q Consensus 188 l~~~~~~LkpgG~l~i~~~~~---~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~ 237 (241)
.+...+-+++|..|.+..-.. ..+..++++.|++++..+.. .|...+++
T Consensus 25 ~kk~l~~l~~G~~L~V~~d~~~a~~di~~~~~~~G~~v~~~~~~-~g~~~~~I 76 (78)
T PRK11018 25 TLEALPQLKKGEILEVVSDCPQSINNIPLDARNHGYTVLDIQQD-GPTIRYLI 76 (78)
T ss_pred HHHHHHhCCCCCEEEEEeCCccHHHHHHHHHHHcCCEEEEEEec-CCeEEEEE
Confidence 344456678888766543222 89999999999999877653 46555543
No 383
>TIGR02884 spore_pdaA delta-lactam-biosynthetic de-N-acetylase. Muramic delta-lactam is an unusual constituent of peptidoglycan, found only in bacterial spores in the peptidoglycan wall, or spore cortex. The proteins in this family are PdaA (yfjS), a member of a larger family of polysaccharide deacetylases, and are specificially involved in delta-lactam biosynthesis. PdaA acts immediately after CwlD, an N-acetylmuramoyl-L-alanine amidase and performs a de-N-acetylation. PdaA may also perform the following transpeptidation for lactam ring formation, as heterologous expression in E. coli of CwlD and PdaA together is sufficient for delta-lactam production.
Probab=28.57 E-value=1.1e+02 Score=26.01 Aligned_cols=45 Identities=13% Similarity=0.348 Sum_probs=33.4
Q ss_pred cHHHHHHHHHHhccCCcEEEEEecCH------HHHHHHHHHCCCceEEEEE
Q psy1420 183 RIDKALSEAYRVLKPGGRFLCLEFSH------EEFKSMIESAGFQYVTYEN 227 (241)
Q Consensus 183 ~~~~~l~~~~~~LkpgG~l~i~~~~~------~~~~~~l~~~Gf~~~~~~~ 227 (241)
......+.+.+.++||.++++-+... +.+...+++.||+.+.+..
T Consensus 172 ~~~~~~~~v~~~~~~g~IiLlHd~~~~t~~aL~~ii~~lk~~Gy~fvtl~e 222 (224)
T TIGR02884 172 GWQYAYKQIMKKIHPGAILLLHAVSKDNAEALDKIIKDLKEQGYTFKSLDD 222 (224)
T ss_pred CHHHHHHHHHhcCCCCcEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEhHH
Confidence 34566777777888988887755322 7788888999999887654
No 384
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=28.51 E-value=3e+02 Score=23.92 Aligned_cols=32 Identities=19% Similarity=0.227 Sum_probs=21.5
Q ss_pred CceeEEeeeehhhccccHHHHHHHHHHhccCCcEEEEE
Q psy1420 167 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCL 204 (241)
Q Consensus 167 ~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~ 204 (241)
..+|+++.+.+- ...+..+.+.|+++|.++..
T Consensus 224 ~~~d~vi~~~~~------~~~~~~~~~~l~~~G~~i~~ 255 (330)
T cd08245 224 GGADVILVTVVS------GAAAEAALGGLRRGGRIVLV 255 (330)
T ss_pred CCCCEEEECCCc------HHHHHHHHHhcccCCEEEEE
Confidence 358888754221 23567778889999988765
No 385
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=28.39 E-value=4.1e+02 Score=23.28 Aligned_cols=33 Identities=18% Similarity=0.173 Sum_probs=21.6
Q ss_pred CceeEEeeeehhhccccHHHHHHHHHHhccCCcEEEEEe
Q psy1420 167 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 205 (241)
Q Consensus 167 ~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 205 (241)
..+|+|+.+.+- ...+....+.|+++|++++..
T Consensus 230 ~~~d~vid~~g~------~~~~~~~~~~l~~~G~~v~~g 262 (339)
T cd08239 230 AGADVAIECSGN------TAARRLALEAVRPWGRLVLVG 262 (339)
T ss_pred CCCCEEEECCCC------HHHHHHHHHHhhcCCEEEEEc
Confidence 368998854321 234566678889999988653
No 386
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=27.76 E-value=1.5e+02 Score=25.65 Aligned_cols=47 Identities=11% Similarity=0.011 Sum_probs=37.8
Q ss_pred CCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHh
Q psy1420 40 GPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAE 118 (241)
Q Consensus 40 ~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~ 118 (241)
...++..|||.=+|+|.+. ..... ......++|+++...+.+..+..
T Consensus 219 ~s~~~diVlDpf~GsGtt~-------------~aa~~-------------------~~r~~ig~e~~~~y~~~~~~r~~ 265 (302)
T COG0863 219 YSFPGDIVLDPFAGSGTTG-------------IAAKN-------------------LGRRFIGIEINPEYVEVALKRLQ 265 (302)
T ss_pred cCCCCCEEeecCCCCChHH-------------HHHHH-------------------cCCceEEEecCHHHHHHHHHHHH
Confidence 4578889999999999987 22221 46788999999999999988876
No 387
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=27.69 E-value=2.8e+02 Score=21.22 Aligned_cols=53 Identities=13% Similarity=0.142 Sum_probs=27.4
Q ss_pred CceeEEeeeehhhcc--ccHHHHHHHHHHhccCCcEEEEEecCHH--HHHHHHHHCCCceE
Q psy1420 167 DSYSAYTIAFGIRNV--TRIDKALSEAYRVLKPGGRFLCLEFSHE--EFKSMIESAGFQYV 223 (241)
Q Consensus 167 ~~~D~V~~~~~l~~~--~~~~~~l~~~~~~LkpgG~l~i~~~~~~--~~~~~l~~~Gf~~~ 223 (241)
...|+|+++-..... .... +. ...++++..++-+...+. .+.+.+++.|...+
T Consensus 80 ~~~Dvvi~~~~~~~~~~~~~~--~~--~~~~~~~~~v~D~~~~~~~~~l~~~~~~~g~~~v 136 (155)
T cd01065 80 AEADLIINTTPVGMKPGDELP--LP--PSLLKPGGVVYDVVYNPLETPLLKEARALGAKTI 136 (155)
T ss_pred ccCCEEEeCcCCCCCCCCCCC--CC--HHHcCCCCEEEEcCcCCCCCHHHHHHHHCCCcee
Confidence 457888876443322 1110 00 123567766554433333 67777888876543
No 388
>KOG0821|consensus
Probab=27.28 E-value=1.7e+02 Score=25.79 Aligned_cols=56 Identities=9% Similarity=0.113 Sum_probs=36.6
Q ss_pred HHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHH
Q psy1420 32 KDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLR 111 (241)
Q Consensus 32 ~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~ 111 (241)
.+.+.+..+.-...-|.++|.|.|..+ +.++. .....+..++.++..+.
T Consensus 39 T~KIvK~A~~~~~~~v~eIgPgpggit-------------R~il~------------------a~~~RL~vVE~D~RFip 87 (326)
T KOG0821|consen 39 TDKIVKKAGNLTNAYVYEIGPGPGGIT-------------RSILN------------------ADVARLLVVEKDTRFIP 87 (326)
T ss_pred HHHHHHhccccccceeEEecCCCCchh-------------HHHHh------------------cchhheeeeeeccccCh
Confidence 444555544444557999999999999 66654 13456777777777766
Q ss_pred HHHHHHh
Q psy1420 112 FLEANAE 118 (241)
Q Consensus 112 ~~~~~~~ 118 (241)
-.+...+
T Consensus 88 ~LQ~L~E 94 (326)
T KOG0821|consen 88 GLQMLSE 94 (326)
T ss_pred HHHHHhh
Confidence 6554444
No 389
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=26.66 E-value=3.7e+02 Score=23.56 Aligned_cols=31 Identities=6% Similarity=0.126 Sum_probs=21.2
Q ss_pred CceeEEeeeehhhccccHHHHHHHHHHhccCCcEEEEE
Q psy1420 167 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCL 204 (241)
Q Consensus 167 ~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~ 204 (241)
..+|+|+.+.+ . ..+..+.++|+++|+++..
T Consensus 223 ~gvd~vid~~g-----~--~~~~~~~~~l~~~G~iv~~ 253 (345)
T cd08293 223 EGVDVYFDNVG-----G--EISDTVISQMNENSHIILC 253 (345)
T ss_pred CCceEEEECCC-----c--HHHHHHHHHhccCCEEEEE
Confidence 46899985432 1 1346677889999998864
No 390
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=26.09 E-value=3.5e+02 Score=23.54 Aligned_cols=32 Identities=13% Similarity=0.064 Sum_probs=19.9
Q ss_pred ceeEEeeeehhhccccHHHHHHHHHHhccCCcEEE
Q psy1420 168 SYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFL 202 (241)
Q Consensus 168 ~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~ 202 (241)
..|+|+.+-.... ..+.++++...++|+..+.
T Consensus 57 ~aDlVilavp~~~---~~~~~~~l~~~l~~~~ii~ 88 (279)
T PRK07417 57 DCDLVILALPIGL---LLPPSEQLIPALPPEAIVT 88 (279)
T ss_pred CCCEEEEcCCHHH---HHHHHHHHHHhCCCCcEEE
Confidence 4688886544322 2356677777788775554
No 391
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=25.90 E-value=2.4e+02 Score=25.41 Aligned_cols=33 Identities=18% Similarity=0.350 Sum_probs=23.8
Q ss_pred CceeEEeeeehhhccccHHHHHHHHHHhccCCcEEEEEec
Q psy1420 167 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEF 206 (241)
Q Consensus 167 ~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 206 (241)
..+|+|+..-+- ..+....+.|+++|+++..-.
T Consensus 210 ~gvDvv~D~vG~-------~~~~~~l~~l~~~G~lv~ig~ 242 (326)
T COG0604 210 KGVDVVLDTVGG-------DTFAASLAALAPGGRLVSIGA 242 (326)
T ss_pred CCceEEEECCCH-------HHHHHHHHHhccCCEEEEEec
Confidence 469999975444 445667788899999887543
No 392
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=25.37 E-value=3.5e+02 Score=23.61 Aligned_cols=32 Identities=22% Similarity=0.319 Sum_probs=22.1
Q ss_pred CceeEEeeeehhhccccHHHHHHHHHHhccCCcEEEEE
Q psy1420 167 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCL 204 (241)
Q Consensus 167 ~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~ 204 (241)
..+|+++.+.+- ...+..+.+.|+++|.++..
T Consensus 226 ~~vd~vld~~g~------~~~~~~~~~~l~~~G~~i~~ 257 (337)
T cd08261 226 EGADVVIDATGN------PASMEEAVELVAHGGRVVLV 257 (337)
T ss_pred CCCCEEEECCCC------HHHHHHHHHHHhcCCEEEEE
Confidence 458999864321 23567788889999988754
No 393
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=25.08 E-value=1.2e+02 Score=24.78 Aligned_cols=27 Identities=7% Similarity=0.017 Sum_probs=15.0
Q ss_pred HHHHHHhhcCCCCCCeEEEEecCCCcch
Q psy1420 31 WKDIFIDRLGPTHDTKLLDVAGGTDPLA 58 (241)
Q Consensus 31 ~~~~~~~~l~~~~~~~vLdvG~G~G~~~ 58 (241)
..+...+.....+ +-|||+|-|+|.+-
T Consensus 17 ~L~~a~~~v~~~~-G~VlElGLGNGRTy 43 (160)
T PF12692_consen 17 CLNWAAAQVAGLP-GPVLELGLGNGRTY 43 (160)
T ss_dssp HHHHHHHHTTT---S-EEEE--TTSHHH
T ss_pred HHHHHHHHhcCCC-CceEEeccCCCccH
Confidence 3444555544444 47999999999876
No 394
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=24.91 E-value=2.3e+02 Score=25.96 Aligned_cols=55 Identities=20% Similarity=0.219 Sum_probs=43.3
Q ss_pred CeeEEecccCCCC--CCCCceeEEeeeehhhcccc--HHHHHHHHHHhccCCcEEEEEe
Q psy1420 151 RLRFLEANAEELP--IESDSYSAYTIAFGIRNVTR--IDKALSEAYRVLKPGGRFLCLE 205 (241)
Q Consensus 151 ~~~~~~~d~~~~~--~~~~~~D~V~~~~~l~~~~~--~~~~l~~~~~~LkpgG~l~i~~ 205 (241)
++.++++|+.+.- .+.+.+|.++..-.=.++++ ....++++.+-+.||.++++-+
T Consensus 308 RV~ihha~~iE~l~~k~ag~Vdr~iLlDaqdwmtd~qln~lws~isrta~~gA~VifRt 366 (414)
T COG5379 308 RVAIHHADIIELLAGKPAGNVDRYILLDAQDWMTDGQLNSLWSEISRTAEAGARVIFRT 366 (414)
T ss_pred heeeecccHHHHhccCCCCCcceEEEecchhhcccchHHHHHHHHhhccCCCcEEEEec
Confidence 6788888877652 35678999987766666665 5789999999999999998854
No 395
>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=24.66 E-value=3.9e+02 Score=25.58 Aligned_cols=45 Identities=18% Similarity=0.139 Sum_probs=31.3
Q ss_pred CCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHH
Q psy1420 44 DTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRF 112 (241)
Q Consensus 44 ~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~ 112 (241)
..+|.-+|+|+-.+. ..+.. .+...+. .+..++...|+++..++.
T Consensus 3 ~~KI~iIGgGSt~tp-------------~~v~g----~l~~~e~-------l~~~el~L~Did~~r~~~ 47 (442)
T COG1486 3 KFKIVIIGGGSTYTP-------------KLLLG----DLARTEE-------LPVRELALYDIDEERLKI 47 (442)
T ss_pred cceEEEECCCccccH-------------HHHHH----HHhcCcc-------CCcceEEEEeCCHHHHHH
Confidence 457999999998887 33333 3333332 256789999999998873
No 396
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=24.53 E-value=3.2e+02 Score=23.87 Aligned_cols=32 Identities=22% Similarity=0.484 Sum_probs=22.0
Q ss_pred CceeEEeeeehhhccccHHHHHHHHHHhccCCcEEEEE
Q psy1420 167 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCL 204 (241)
Q Consensus 167 ~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~ 204 (241)
..+|+++.+.+- ...+....+.|+++|+++..
T Consensus 235 ~~~d~vld~~g~------~~~~~~~~~~l~~~G~~v~~ 266 (347)
T cd05278 235 RGVDCVIEAVGF------EETFEQAVKVVRPGGTIANV 266 (347)
T ss_pred CCCcEEEEccCC------HHHHHHHHHHhhcCCEEEEE
Confidence 468988854221 14677778889999988754
No 397
>KOG1098|consensus
Probab=23.87 E-value=46 Score=33.27 Aligned_cols=17 Identities=12% Similarity=0.173 Sum_probs=14.9
Q ss_pred CCCCeEEEEecCCCcch
Q psy1420 42 THDTKLLDVAGGTDPLA 58 (241)
Q Consensus 42 ~~~~~vLdvG~G~G~~~ 58 (241)
.++..|||+||.+|.|.
T Consensus 43 ~~a~~vlDLcaAPG~W~ 59 (780)
T KOG1098|consen 43 EKAHVVLDLCAAPGGWL 59 (780)
T ss_pred cccchheeeccCCcHHH
Confidence 56678999999999998
No 398
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=23.69 E-value=2.4e+02 Score=22.94 Aligned_cols=61 Identities=16% Similarity=0.282 Sum_probs=35.5
Q ss_pred CCceeEEeeeehhhccccHHHHHHHHHHhccCCcEEEEEecCH--HHHHHHHHHCCCceEEEEEec
Q psy1420 166 SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH--EEFKSMIESAGFQYVTYENLT 229 (241)
Q Consensus 166 ~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~--~~~~~~l~~~Gf~~~~~~~~~ 229 (241)
.+++|+|++-=-+-.-+-..+....+.-++|+++.+++++-.. +.+.+++ |++..+....+
T Consensus 84 ~~~~d~vv~DPPFl~~ec~~k~a~ti~~L~k~~~kii~~Tg~~~~~~~~~ll---~~~~~~f~p~h 146 (162)
T PF10237_consen 84 KGKFDVVVIDPPFLSEECLTKTAETIRLLLKPGGKIILCTGEEMEELIKKLL---GLRMCDFQPEH 146 (162)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHHHHhCccceEEEecHHHHHHHHHHHh---CeeEEeEEecc
Confidence 4689999975433222223455566666778888888765322 2333333 67666665543
No 399
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=23.33 E-value=4e+02 Score=23.42 Aligned_cols=31 Identities=19% Similarity=0.245 Sum_probs=22.2
Q ss_pred CceeEEeeeehhhccccHHHHHHHHHHhccCCcEEEEE
Q psy1420 167 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCL 204 (241)
Q Consensus 167 ~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~ 204 (241)
..+|+|+...+ ...+....++|+++|+++..
T Consensus 220 ~gvd~v~d~~g-------~~~~~~~~~~l~~~G~iv~~ 250 (338)
T cd08295 220 NGIDIYFDNVG-------GKMLDAVLLNMNLHGRIAAC 250 (338)
T ss_pred CCcEEEEECCC-------HHHHHHHHHHhccCcEEEEe
Confidence 46899885433 14567788889999998764
No 400
>cd00291 SirA_YedF_YeeD SirA, YedF, and YeeD. Two-layered alpha/beta sandwich domain. SirA (also known as UvrY, and YhhP) belongs to a family of bacterial two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=23.18 E-value=2.3e+02 Score=18.68 Aligned_cols=39 Identities=21% Similarity=0.220 Sum_probs=28.1
Q ss_pred HHHHhccCCcEEEEEecC---HHHHHHHHHHCCCceEEEEEe
Q psy1420 190 EAYRVLKPGGRFLCLEFS---HEEFKSMIESAGFQYVTYENL 228 (241)
Q Consensus 190 ~~~~~LkpgG~l~i~~~~---~~~~~~~l~~~Gf~~~~~~~~ 228 (241)
...+-+++|..+.+..-. ...+..++++.|+.+...+..
T Consensus 18 ~~l~~l~~g~~l~v~~d~~~~~~~i~~~~~~~g~~~~~~~~~ 59 (69)
T cd00291 18 KALEKLKSGEVLEVLLDDPGAVEDIPAWAKETGHEVLEVEEE 59 (69)
T ss_pred HHHhcCCCCCEEEEEecCCcHHHHHHHHHHHcCCEEEEEEEe
Confidence 334457788876664333 389999999999998776654
No 401
>PRK08265 short chain dehydrogenase; Provisional
Probab=22.87 E-value=4.6e+02 Score=22.03 Aligned_cols=15 Identities=13% Similarity=-0.064 Sum_probs=9.0
Q ss_pred CCCceeecCChHhHH
Q psy1420 97 RQFPNQIDIPNPRLR 111 (241)
Q Consensus 97 ~~~~~~~D~s~~~~~ 111 (241)
+..++.++.++...+
T Consensus 30 G~~V~~~~r~~~~~~ 44 (261)
T PRK08265 30 GARVAIVDIDADNGA 44 (261)
T ss_pred CCEEEEEeCCHHHHH
Confidence 446777777655433
No 402
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=22.82 E-value=2.3e+02 Score=25.62 Aligned_cols=52 Identities=19% Similarity=0.339 Sum_probs=36.5
Q ss_pred CceeEEeeeehhhccccHHHHHHHHHHhccCCcEEEEEecCH---HHHHHHHHHCC
Q psy1420 167 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH---EEFKSMIESAG 219 (241)
Q Consensus 167 ~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~---~~~~~~l~~~G 219 (241)
+.+|+++.-+.-+ -...+..|..+.+.+.|||.+++.--.. ...++++++.|
T Consensus 36 ~~~d~~l~~~pK~-~~e~e~qLa~ll~~~~~g~~i~v~g~~~~g~~s~~k~l~~~~ 90 (300)
T COG2813 36 DDFDAVLLYWPKH-KAEAEFQLAQLLARLPPGGEIVVVGEKRDGVRSAEKMLEKYG 90 (300)
T ss_pred CCCCEEEEEccCc-hHHHHHHHHHHHhhCCCCCeEEEEecccchHHHHHHHHHHhc
Confidence 3789998644332 2345677889999999999999875444 56666666665
No 403
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=22.77 E-value=5.2e+02 Score=22.56 Aligned_cols=33 Identities=18% Similarity=0.324 Sum_probs=22.3
Q ss_pred CceeEEeeeehhhccccHHHHHHHHHHhccCCcEEEEEe
Q psy1420 167 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 205 (241)
Q Consensus 167 ~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 205 (241)
..+|+++.+.+ ....+..+.++|+++|+++...
T Consensus 226 ~~~d~vld~~g------~~~~~~~~~~~l~~~G~~v~~g 258 (343)
T cd08236 226 RGADLVIEAAG------SPATIEQALALARPGGKVVLVG 258 (343)
T ss_pred CCCCEEEECCC------CHHHHHHHHHHhhcCCEEEEEc
Confidence 35898885421 1345677788889999987653
No 404
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=22.72 E-value=2.7e+02 Score=26.34 Aligned_cols=33 Identities=9% Similarity=0.217 Sum_probs=21.4
Q ss_pred ceeEEeeeehhhccccHHHHHHH-HHHhccCCcEEEEEec
Q psy1420 168 SYSAYTIAFGIRNVTRIDKALSE-AYRVLKPGGRFLCLEF 206 (241)
Q Consensus 168 ~~D~V~~~~~l~~~~~~~~~l~~-~~~~LkpgG~l~i~~~ 206 (241)
..|+|+.+-+ . ...+.. ..+.+|+||+++....
T Consensus 257 ~aDVVI~atG-----~-~~~i~~~~l~~mk~GgilvnvG~ 290 (413)
T cd00401 257 EGDIFVTTTG-----N-KDIITGEHFEQMKDGAIVCNIGH 290 (413)
T ss_pred CCCEEEECCC-----C-HHHHHHHHHhcCCCCcEEEEeCC
Confidence 4688886432 2 234444 4789999999976543
No 405
>PF01963 TraB: TraB family; InterPro: IPR002816 In prokaryotes, for example Enterococcus faecalis (Streptococcus faecalis), the conjugative transfer of certain plasmids is controlled by peptide pheromones []. Plasmid free recipient cells secret plasmid specific oligopeptides, termed sex pheromones. They induce bacterial clumping and specifically activate the conjugative transfer of the corresponding plasmid. Once recipient cells acquire the plasmid they start to produce a pheromone inhibitor to block the activity of the pheromone and to prevent plasmid containing cells from clumping; they also become donor cells able to transfer the plasmid to plasmid free recipient cells. Examples of such plasmid-pheromone systems are bacteriocin plasmid pPD1 [], haemolysin/bacteriocin plasmid, pAD1 [], tetracycline-resistance plasmid, pCF10 [], and the haemolysin/bacteriocin plasmid, pOB1 []. TraB in combination with another factor contributes to pheromone shutdown in cells that have acquired a plasmid. It exact function has not yet been determined [, ]. This entry also contains plant and mammalian proteins, suggesting that these Trab-related proteins may have a somewhat wider or different function in eukaryotes.
Probab=22.70 E-value=1.4e+02 Score=25.23 Aligned_cols=39 Identities=15% Similarity=0.318 Sum_probs=30.3
Q ss_pred HHHHHHHHhccCC-cEEEEEecCH----HHHHHHHHHCCCceEE
Q psy1420 186 KALSEAYRVLKPG-GRFLCLEFSH----EEFKSMIESAGFQYVT 224 (241)
Q Consensus 186 ~~l~~~~~~Lkpg-G~l~i~~~~~----~~~~~~l~~~Gf~~~~ 224 (241)
.....+.+.++.+ ..|+++-..| ..+.++|++.||++..
T Consensus 215 ~~~~~i~~~l~~~~~~fvvVGa~HL~G~~gvl~lLr~~Gy~V~~ 258 (259)
T PF01963_consen 215 RWAEKIEELLKEGGTVFVVVGAGHLPGEDGVLDLLRKKGYTVEP 258 (259)
T ss_pred HHHHHHHHHHhcCCCEEEEEcchhccchhhHHHHHHhCCceeec
Confidence 4567777788777 6777776666 8899999999999754
No 406
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=22.60 E-value=1.6e+02 Score=26.82 Aligned_cols=22 Identities=18% Similarity=-0.164 Sum_probs=16.7
Q ss_pred cCCCceeecCChHhHHHHHHHH
Q psy1420 96 IRQFPNQIDIPNPRLRFLEANA 117 (241)
Q Consensus 96 ~~~~~~~~D~s~~~~~~~~~~~ 117 (241)
.+..+...|.++..++.+...+
T Consensus 29 aG~~V~l~D~~~~~~~~~~~~i 50 (321)
T PRK07066 29 HGLDVVAWDPAPGAEAALRANV 50 (321)
T ss_pred CCCeEEEEeCCHHHHHHHHHHH
Confidence 4678999999998877665543
No 407
>PF07101 DUF1363: Protein of unknown function (DUF1363); InterPro: IPR009795 This family consists of several Trypanosoma brucei putative variant specific antigen proteins of around 80 residues in length.
Probab=22.52 E-value=35 Score=25.66 Aligned_cols=12 Identities=17% Similarity=0.293 Sum_probs=10.2
Q ss_pred EEEEecCCCcch
Q psy1420 47 LLDVAGGTDPLA 58 (241)
Q Consensus 47 vLdvG~G~G~~~ 58 (241)
=+|+|||.|+.-
T Consensus 6 NIDIGcG~GNTm 17 (124)
T PF07101_consen 6 NIDIGCGAGNTM 17 (124)
T ss_pred ccccccCCCcch
Confidence 369999999876
No 408
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=22.41 E-value=1.5e+02 Score=23.64 Aligned_cols=59 Identities=14% Similarity=0.206 Sum_probs=34.0
Q ss_pred ceeEEeeeehhhccccHHHHHHH--HHHhccCCcEEEEEecCH----HHHHHHHHHCCCceEEEEEe
Q psy1420 168 SYSAYTIAFGIRNVTRIDKALSE--AYRVLKPGGRFLCLEFSH----EEFKSMIESAGFQYVTYENL 228 (241)
Q Consensus 168 ~~D~V~~~~~l~~~~~~~~~l~~--~~~~LkpgG~l~i~~~~~----~~~~~~l~~~Gf~~~~~~~~ 228 (241)
..|+|+++. .+-......+.. +...|++|..++-..... .++.+.+++.|...++.--.
T Consensus 57 ~~dvvi~~v--~~~~~v~~v~~~~~i~~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~vdapV~ 121 (163)
T PF03446_consen 57 QADVVILCV--PDDDAVEAVLFGENILAGLRPGKIIIDMSTISPETSRELAERLAAKGVRYVDAPVS 121 (163)
T ss_dssp HBSEEEE-S--SSHHHHHHHHHCTTHGGGS-TTEEEEE-SS--HHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred cccceEeec--ccchhhhhhhhhhHHhhccccceEEEecCCcchhhhhhhhhhhhhccceeeeeeee
Confidence 348887522 122223455555 677777777666433222 78888889999877766543
No 409
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=22.13 E-value=1.1e+02 Score=25.83 Aligned_cols=32 Identities=9% Similarity=0.112 Sum_probs=21.0
Q ss_pred hHHHHHHHHHhhcCCCCCCeEEEEecCCCcch
Q psy1420 27 IHRLWKDIFIDRLGPTHDTKLLDVAGGTDPLA 58 (241)
Q Consensus 27 ~~~~~~~~~~~~l~~~~~~~vLdvG~G~G~~~ 58 (241)
..+.+...+.+.+...+..+++|+=||+|..+
T Consensus 4 ~K~~l~~~I~~~ip~~~~~~~vepF~G~g~V~ 35 (260)
T PF02086_consen 4 GKRKLAKWIIELIPKNKHKTYVEPFAGGGSVF 35 (260)
T ss_dssp -SGGGHHHHHHHS-S-S-SEEEETT-TTSHHH
T ss_pred cHHHHHHHHHHHcCCCCCCEEEEEecchhHHH
Confidence 34455667777776546779999999999887
No 410
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=21.74 E-value=7.4e+02 Score=23.97 Aligned_cols=87 Identities=14% Similarity=0.082 Sum_probs=51.0
Q ss_pred CCCceeecCChHhHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCC----CCCCceeEE
Q psy1420 97 RQFPNQIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELP----IESDSYSAY 172 (241)
Q Consensus 97 ~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~~D~V 172 (241)
+..++.+|.++...+.+++. ....+.+|+.+.. ..-++.|.+
T Consensus 440 g~~vvvId~d~~~~~~~~~~----------------------------------g~~~i~GD~~~~~~L~~a~i~~a~~v 485 (558)
T PRK10669 440 GIPLVVIETSRTRVDELRER----------------------------------GIRAVLGNAANEEIMQLAHLDCARWL 485 (558)
T ss_pred CCCEEEEECCHHHHHHHHHC----------------------------------CCeEEEcCCCCHHHHHhcCccccCEE
Confidence 46799999999887777531 2557788877642 122467766
Q ss_pred eeeehhhccccHH--HHHHHHHHhccCCcEEEEEecCHHHHHHHHHHCCCceE
Q psy1420 173 TIAFGIRNVTRID--KALSEAYRVLKPGGRFLCLEFSHEEFKSMIESAGFQYV 223 (241)
Q Consensus 173 ~~~~~l~~~~~~~--~~l~~~~~~LkpgG~l~i~~~~~~~~~~~l~~~Gf~~~ 223 (241)
++. .++.. ..+-...+...|+..++..... .+-.+.++++|-+.+
T Consensus 486 iv~-----~~~~~~~~~iv~~~~~~~~~~~iiar~~~-~~~~~~l~~~Gad~v 532 (558)
T PRK10669 486 LLT-----IPNGYEAGEIVASAREKRPDIEIIARAHY-DDEVAYITERGANQV 532 (558)
T ss_pred EEE-----cCChHHHHHHHHHHHHHCCCCeEEEEECC-HHHHHHHHHcCCCEE
Confidence 542 12221 1233334555777777765444 344556677886543
No 411
>TIGR02873 spore_ylxY probable sporulation protein, polysaccharide deacetylase family. Members of this protein family are most closely related to TIGR02764, a subset of polysaccharide deacetylase family proteins found in a species if and only if the species forms endospores like those of Bacillus subtilis or Clostridium tetani. This family is likewise restricted to spore-formers, but is not universal among them in having sequences with full-length matches to the model.
Probab=21.66 E-value=1.3e+02 Score=26.53 Aligned_cols=46 Identities=17% Similarity=0.292 Sum_probs=34.1
Q ss_pred ccHHHHHHHHHHhccCCcEEEEEecCH-----HHHHHHHHHCCCceEEEEE
Q psy1420 182 TRIDKALSEAYRVLKPGGRFLCLEFSH-----EEFKSMIESAGFQYVTYEN 227 (241)
Q Consensus 182 ~~~~~~l~~~~~~LkpgG~l~i~~~~~-----~~~~~~l~~~Gf~~~~~~~ 227 (241)
+.+....+.+.+.++||.++++-+... +.+...+++.||+.+.+..
T Consensus 215 ~~~~~i~~~v~~~~~~G~IILmHd~~~T~~aL~~iI~~Lk~kGy~fvtl~e 265 (268)
T TIGR02873 215 PSPSVMVNRVLSKIHPGAMVLMHPTASSTEGLEEMITIIKEKGYKIGTITE 265 (268)
T ss_pred CCHHHHHHHHHhcCCCCcEEEEcCCccHHHHHHHHHHHHHHCCCEEEeHHH
Confidence 456777888888888988876644322 7778888999999887653
No 412
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=20.99 E-value=3.3e+02 Score=25.46 Aligned_cols=51 Identities=24% Similarity=0.259 Sum_probs=29.5
Q ss_pred ceeEEeeeehhh-------ccccHHHHHHHHHHhccCCcEEEEEecCH----HHHHHHHHHC
Q psy1420 168 SYSAYTIAFGIR-------NVTRIDKALSEAYRVLKPGGRFLCLEFSH----EEFKSMIESA 218 (241)
Q Consensus 168 ~~D~V~~~~~l~-------~~~~~~~~l~~~~~~LkpgG~l~i~~~~~----~~~~~~l~~~ 218 (241)
..|+|+.+-.-. .......+++.+.+.+++|..++..+... +++...+.+.
T Consensus 75 ~aDvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt~~~~~~l~~~ 136 (415)
T PRK11064 75 PADAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGATEQMAEWLAEA 136 (415)
T ss_pred cCCEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHHHHHHHh
Confidence 357777554321 12234566778888898877665543322 6666666654
No 413
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=20.80 E-value=2.2e+02 Score=24.80 Aligned_cols=20 Identities=15% Similarity=-0.066 Sum_probs=15.3
Q ss_pred CCCceeecCChHhHHHHHHH
Q psy1420 97 RQFPNQIDIPNPRLRFLEAN 116 (241)
Q Consensus 97 ~~~~~~~D~s~~~~~~~~~~ 116 (241)
+..+...|.++..++.+...
T Consensus 26 g~~V~~~d~~~~~~~~~~~~ 45 (282)
T PRK05808 26 GYDVVMVDISDAAVDRGLAT 45 (282)
T ss_pred CCceEEEeCCHHHHHHHHHH
Confidence 45799999999988765543
No 414
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=20.76 E-value=4.1e+02 Score=26.90 Aligned_cols=23 Identities=17% Similarity=-0.078 Sum_probs=18.5
Q ss_pred cCCCceeecCChHhHHHHHHHHh
Q psy1420 96 IRQFPNQIDIPNPRLRFLEANAE 118 (241)
Q Consensus 96 ~~~~~~~~D~s~~~~~~~~~~~~ 118 (241)
.+..++..|.++..++.+...+.
T Consensus 335 ~G~~V~l~d~~~~~l~~~~~~~~ 357 (715)
T PRK11730 335 KGVPVIMKDINQKALDLGMTEAA 357 (715)
T ss_pred CCCeEEEEeCCHHHHHHHHHHHH
Confidence 46789999999999888776654
No 415
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=20.67 E-value=6.6e+02 Score=24.74 Aligned_cols=87 Identities=10% Similarity=0.075 Sum_probs=53.0
Q ss_pred CCCceeecCChHhHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCC----CCCCceeEE
Q psy1420 97 RQFPNQIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELP----IESDSYSAY 172 (241)
Q Consensus 97 ~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~~D~V 172 (241)
+..++.+|.++..++.+++. ....+.+|+.+.. ..-++.|++
T Consensus 423 g~~vvvID~d~~~v~~~~~~----------------------------------g~~v~~GDat~~~~L~~agi~~A~~v 468 (601)
T PRK03659 423 KMRITVLERDISAVNLMRKY----------------------------------GYKVYYGDATQLELLRAAGAEKAEAI 468 (601)
T ss_pred CCCEEEEECCHHHHHHHHhC----------------------------------CCeEEEeeCCCHHHHHhcCCccCCEE
Confidence 56799999999988877531 2456788877653 122456777
Q ss_pred eeeehhhccccHHHH--HHHHHHhccCCcEEEEEecCHHHHHHHHHHCCCceE
Q psy1420 173 TIAFGIRNVTRIDKA--LSEAYRVLKPGGRFLCLEFSHEEFKSMIESAGFQYV 223 (241)
Q Consensus 173 ~~~~~l~~~~~~~~~--l~~~~~~LkpgG~l~i~~~~~~~~~~~l~~~Gf~~~ 223 (241)
++. .++.+.. +-...|.+.|+..+++.... ++-.+.++++|-+.+
T Consensus 469 v~~-----~~d~~~n~~i~~~~r~~~p~~~IiaRa~~-~~~~~~L~~~Ga~~v 515 (601)
T PRK03659 469 VIT-----CNEPEDTMKIVELCQQHFPHLHILARARG-RVEAHELLQAGVTQF 515 (601)
T ss_pred EEE-----eCCHHHHHHHHHHHHHHCCCCeEEEEeCC-HHHHHHHHhCCCCEE
Confidence 653 2333322 33344556788888765444 344556667776544
No 416
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=20.60 E-value=2.3e+02 Score=24.42 Aligned_cols=46 Identities=24% Similarity=0.376 Sum_probs=36.7
Q ss_pred HHHHHHHHHHhccCCcEEEEEecCH--HHHHHHHHHCCCceEEEEEec
Q psy1420 184 IDKALSEAYRVLKPGGRFLCLEFSH--EEFKSMIESAGFQYVTYENLT 229 (241)
Q Consensus 184 ~~~~l~~~~~~LkpgG~l~i~~~~~--~~~~~~l~~~Gf~~~~~~~~~ 229 (241)
....+.++.++|+++|.+.+..... ..+...+++.||.+....-|.
T Consensus 78 ~~~~~~~~~rvl~~~~~~~v~~~~~~~~~~~~~~~~~gf~~~~~iiw~ 125 (302)
T COG0863 78 LLQWLAEQKRVLKPGGSLYVIDPFSNLARIEDIAKKLGFEILGKIIWK 125 (302)
T ss_pred HHHHHHHhhheecCCCEEEEECCchhhhHHHHHHHhCCCeEeeeEEEe
Confidence 5678889999999999988765432 777888888999988777664
No 417
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=20.53 E-value=6.4e+02 Score=23.25 Aligned_cols=107 Identities=11% Similarity=0.081 Sum_probs=0.0
Q ss_pred cCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCCccccccccc
Q psy1420 52 GGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIESDSYSAYT 131 (241)
Q Consensus 52 ~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (241)
||.|..+ ..++. .+... ...++.+|.++..++.+.....
T Consensus 237 iG~G~~g-------------~~l~~----~L~~~-----------~~~v~vid~~~~~~~~~~~~~~------------- 275 (453)
T PRK09496 237 VGGGNIG-------------YYLAK----LLEKE-----------GYSVKLIERDPERAEELAEELP------------- 275 (453)
T ss_pred ECCCHHH-------------HHHHH----HHHhC-----------CCeEEEEECCHHHHHHHHHHCC-------------
Q ss_pred eecceeeeeeccccCCCCCCeeEEecccCCCC----CCCCceeEEeeeehhhccccHHHHHHHHHHhccCCcEEEEEecC
Q psy1420 132 IAFGIRNVTRIDKIDIPNPRLRFLEANAEELP----IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFS 207 (241)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 207 (241)
.+.++.+|..... ..-..+|.|++...=. ...-....+.+.+.+. -++....
T Consensus 276 -------------------~~~~i~gd~~~~~~L~~~~~~~a~~vi~~~~~~---~~n~~~~~~~~~~~~~--~ii~~~~ 331 (453)
T PRK09496 276 -------------------NTLVLHGDGTDQELLEEEGIDEADAFIALTNDD---EANILSSLLAKRLGAK--KVIALVN 331 (453)
T ss_pred -------------------CCeEEECCCCCHHHHHhcCCccCCEEEECCCCc---HHHHHHHHHHHHhCCC--eEEEEEC
Q ss_pred HHHHHHHHHHCCCceE
Q psy1420 208 HEEFKSMIESAGFQYV 223 (241)
Q Consensus 208 ~~~~~~~l~~~Gf~~~ 223 (241)
..+-.+.++..|...+
T Consensus 332 ~~~~~~~~~~~g~~~v 347 (453)
T PRK09496 332 RPAYVDLVEGLGIDIA 347 (453)
T ss_pred CcchHHHHHhcCCCEE
No 418
>COG3735 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.44 E-value=1.2e+02 Score=27.38 Aligned_cols=43 Identities=19% Similarity=0.373 Sum_probs=32.0
Q ss_pred cHHHHHHH-HHHhccCCcEEEEEecCH----HHHHHHHHHCCCceEEE
Q psy1420 183 RIDKALSE-AYRVLKPGGRFLCLEFSH----EEFKSMIESAGFQYVTY 225 (241)
Q Consensus 183 ~~~~~l~~-~~~~LkpgG~l~i~~~~~----~~~~~~l~~~Gf~~~~~ 225 (241)
+......+ ....+.+|++|+++.-.+ +.+.+++++.||.+.++
T Consensus 251 ~RN~~wad~~~~~l~~G~~fvaVGAlHL~G~e~L~e~Lrk~g~t~trv 298 (299)
T COG3735 251 QRNRAWADKKTPLLQGGRYFVAVGALHLPGPEGLVELLRKDGFTVTRV 298 (299)
T ss_pred HHHHHHHHhhccccCCCCEEEEeccccccCcccHHHHHHHcCCeeeec
Confidence 33444444 667888899988876555 99999999999987653
No 419
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=20.11 E-value=6.4e+02 Score=22.62 Aligned_cols=33 Identities=12% Similarity=0.129 Sum_probs=20.5
Q ss_pred ceeEEeeeehhhccccHHHHHHHHHHhccCC-cEEEEEec
Q psy1420 168 SYSAYTIAFGIRNVTRIDKALSEAYRVLKPG-GRFLCLEF 206 (241)
Q Consensus 168 ~~D~V~~~~~l~~~~~~~~~l~~~~~~Lkpg-G~l~i~~~ 206 (241)
.+|+++.+-+- ...+....+.++++ |++++...
T Consensus 255 g~d~vid~~G~------~~~~~~~~~~~~~~~G~~v~~g~ 288 (368)
T TIGR02818 255 GVDYSFECIGN------VNVMRAALECCHKGWGESIIIGV 288 (368)
T ss_pred CCCEEEECCCC------HHHHHHHHHHhhcCCCeEEEEec
Confidence 57888754321 23566667778786 88776543
No 420
>PRK10458 DNA cytosine methylase; Provisional
Probab=20.10 E-value=7.8e+02 Score=23.64 Aligned_cols=43 Identities=14% Similarity=0.041 Sum_probs=30.6
Q ss_pred CCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHH
Q psy1420 44 DTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANA 117 (241)
Q Consensus 44 ~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~ 117 (241)
..+++|+=||.|... .-+-. .....+.++|+++.+.+.-..+.
T Consensus 88 ~~~~iDLFsGiGGl~-------------lGfe~------------------aG~~~v~a~Eid~~A~~TY~~N~ 130 (467)
T PRK10458 88 AFRFIDLFAGIGGIR-------------RGFEA------------------IGGQCVFTSEWNKHAVRTYKANW 130 (467)
T ss_pred CceEEEeCcCccHHH-------------HHHHH------------------cCCEEEEEEechHHHHHHHHHHc
Confidence 568999999999987 22211 12335788999998888777664
Done!