Query psy1420
Match_columns 241
No_of_seqs 133 out of 1409
Neff 7.3
Searched_HMMs 29240
Date Fri Aug 16 22:00:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1420.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1420hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dtn_A Putative methyltransfer 99.8 6.4E-20 2.2E-24 154.7 14.2 176 3-240 4-225 (234)
2 3hnr_A Probable methyltransfer 99.8 2.7E-20 9.3E-25 155.4 11.7 174 1-240 1-211 (220)
3 4gek_A TRNA (CMO5U34)-methyltr 99.8 2.1E-19 7.1E-24 156.5 16.1 144 41-241 68-257 (261)
4 3dlc_A Putative S-adenosyl-L-m 99.8 9.5E-20 3.2E-24 150.9 12.8 147 28-232 29-207 (219)
5 3h2b_A SAM-dependent methyltra 99.8 1.5E-19 5E-24 149.3 12.2 170 2-238 2-192 (203)
6 3dh0_A SAM dependent methyltra 99.8 1.9E-18 6.6E-23 144.0 16.6 152 32-240 26-192 (219)
7 3bus_A REBM, methyltransferase 99.8 2E-18 6.8E-23 148.8 15.1 143 30-229 48-217 (273)
8 3l8d_A Methyltransferase; stru 99.8 1.4E-18 4.7E-23 146.8 13.7 162 4-229 15-201 (242)
9 1vl5_A Unknown conserved prote 99.8 1.6E-18 5.5E-23 148.7 14.3 139 32-229 26-191 (260)
10 4htf_A S-adenosylmethionine-de 99.8 2.5E-18 8.5E-23 149.6 15.4 165 5-228 26-232 (285)
11 3g5l_A Putative S-adenosylmeth 99.8 2.7E-18 9.3E-23 146.5 14.7 137 32-229 33-217 (253)
12 3ou2_A SAM-dependent methyltra 99.8 3.7E-18 1.2E-22 141.6 14.7 164 3-234 9-211 (218)
13 1y8c_A S-adenosylmethionine-de 99.8 4.2E-18 1.4E-22 143.5 15.3 171 8-241 2-245 (246)
14 2p7i_A Hypothetical protein; p 99.8 6.4E-18 2.2E-22 142.3 14.8 156 5-229 9-200 (250)
15 3bkw_A MLL3908 protein, S-aden 99.8 6.4E-18 2.2E-22 142.6 14.4 160 7-228 5-214 (243)
16 1xxl_A YCGJ protein; structura 99.8 8.1E-18 2.8E-22 143.1 14.7 139 32-229 10-175 (239)
17 3e8s_A Putative SAM dependent 99.8 2.8E-18 9.5E-23 142.8 10.9 172 4-241 12-227 (227)
18 3kkz_A Uncharacterized protein 99.8 9.7E-18 3.3E-22 144.5 14.7 140 32-229 34-197 (267)
19 2o57_A Putative sarcosine dime 99.8 7.1E-18 2.4E-22 147.3 14.0 142 31-229 66-235 (297)
20 3e23_A Uncharacterized protein 99.8 7.2E-18 2.5E-22 140.1 12.8 153 3-229 11-183 (211)
21 3ege_A Putative methyltransfer 99.8 2.1E-18 7.3E-23 148.6 9.7 150 8-229 4-179 (261)
22 3vc1_A Geranyl diphosphate 2-C 99.7 1.8E-17 6E-22 146.5 15.1 140 32-229 105-270 (312)
23 3pfg_A N-methyltransferase; N, 99.7 8.9E-18 3E-22 144.3 12.5 133 43-241 50-249 (263)
24 2yqz_A Hypothetical protein TT 99.7 2.4E-17 8.3E-22 140.6 15.1 162 6-228 2-196 (263)
25 1xtp_A LMAJ004091AAA; SGPP, st 99.7 2.7E-17 9.2E-22 139.8 15.1 139 31-229 81-239 (254)
26 3f4k_A Putative methyltransfer 99.7 1.3E-17 4.4E-22 142.2 13.2 140 32-229 34-197 (257)
27 3hem_A Cyclopropane-fatty-acyl 99.7 9E-18 3.1E-22 147.5 12.4 138 32-229 61-244 (302)
28 3ocj_A Putative exported prote 99.7 1.5E-17 5.2E-22 146.5 13.9 145 41-241 116-304 (305)
29 2ex4_A Adrenal gland protein A 99.7 1.9E-17 6.5E-22 140.6 13.9 130 42-229 78-226 (241)
30 1nkv_A Hypothetical protein YJ 99.7 1.9E-17 6.5E-22 141.1 13.8 139 31-227 24-186 (256)
31 1kpg_A CFA synthase;, cyclopro 99.7 2E-17 6.9E-22 143.7 13.9 138 32-229 53-229 (287)
32 3mgg_A Methyltransferase; NYSG 99.7 2.4E-17 8.1E-22 142.4 14.0 142 30-228 24-198 (276)
33 4fsd_A Arsenic methyltransfera 99.7 2.2E-17 7.6E-22 150.5 14.5 133 41-227 81-250 (383)
34 3ujc_A Phosphoethanolamine N-m 99.7 1.7E-17 5.8E-22 141.6 12.9 138 32-229 44-207 (266)
35 1ri5_A MRNA capping enzyme; me 99.7 5.3E-17 1.8E-21 140.9 14.1 131 41-228 62-250 (298)
36 3bxo_A N,N-dimethyltransferase 99.7 3.4E-17 1.2E-21 137.8 11.7 167 7-241 2-239 (239)
37 3d2l_A SAM-dependent methyltra 99.7 1.3E-16 4.6E-21 134.5 15.2 167 8-241 3-243 (243)
38 3sm3_A SAM-dependent methyltra 99.7 8.5E-17 2.9E-21 134.6 13.4 131 42-229 29-208 (235)
39 3i9f_A Putative type 11 methyl 99.7 2.9E-17 1E-21 131.8 9.8 130 36-234 10-154 (170)
40 3lcc_A Putative methyl chlorid 99.7 3.8E-17 1.3E-21 138.0 10.7 128 43-229 66-208 (235)
41 2a14_A Indolethylamine N-methy 99.7 2.8E-16 9.4E-21 135.9 15.9 167 40-241 52-260 (263)
42 3ccf_A Cyclopropane-fatty-acyl 99.7 3.6E-17 1.2E-21 141.9 10.3 133 32-229 46-211 (279)
43 2fk8_A Methoxy mycolic acid sy 99.7 2.9E-16 1E-20 138.6 16.0 138 32-229 79-255 (318)
44 1ve3_A Hypothetical protein PH 99.7 7.2E-16 2.5E-20 128.6 17.2 138 29-228 26-215 (227)
45 4hg2_A Methyltransferase type 99.7 3.5E-17 1.2E-21 142.2 8.7 131 6-208 8-138 (257)
46 2p35_A Trans-aconitate 2-methy 99.7 1.6E-16 5.5E-21 135.4 12.5 143 13-223 8-185 (259)
47 2aot_A HMT, histamine N-methyl 99.7 1.6E-16 5.6E-21 139.1 12.3 135 41-226 50-219 (292)
48 3gwz_A MMCR; methyltransferase 99.7 1.5E-15 5.1E-20 137.6 18.9 150 32-240 191-368 (369)
49 2xvm_A Tellurite resistance pr 99.7 3.7E-16 1.3E-20 127.7 13.2 133 34-228 23-173 (199)
50 1x19_A CRTF-related protein; m 99.7 8.2E-16 2.8E-20 138.5 16.4 148 33-241 180-359 (359)
51 1vlm_A SAM-dependent methyltra 99.7 1E-15 3.5E-20 128.2 15.7 150 6-229 14-189 (219)
52 3dli_A Methyltransferase; PSI- 99.7 1.8E-16 6.3E-21 134.4 10.9 131 32-229 29-185 (240)
53 2gs9_A Hypothetical protein TT 99.7 2.5E-16 8.6E-21 130.6 11.3 134 8-208 2-135 (211)
54 2i62_A Nicotinamide N-methyltr 99.7 1.5E-15 5E-20 129.7 16.1 162 40-241 53-261 (265)
55 3cc8_A Putative methyltransfer 99.7 3.9E-16 1.4E-20 129.9 11.5 131 33-230 23-187 (230)
56 2g72_A Phenylethanolamine N-me 99.7 2E-15 6.9E-20 131.7 16.2 151 42-229 70-257 (289)
57 1pjz_A Thiopurine S-methyltran 99.7 1.2E-16 4E-21 133.3 8.0 145 37-229 16-177 (203)
58 3jwh_A HEN1; methyltransferase 99.7 5.8E-16 2E-20 129.2 12.2 139 32-225 18-189 (217)
59 3gu3_A Methyltransferase; alph 99.7 1.5E-15 5E-20 132.5 14.9 130 40-227 19-189 (284)
60 3i53_A O-methyltransferase; CO 99.7 1.9E-15 6.4E-20 134.6 15.8 144 36-240 162-331 (332)
61 2r3s_A Uncharacterized protein 99.7 1.3E-15 4.4E-20 135.1 14.5 150 33-241 153-335 (335)
62 3bkx_A SAM-dependent methyltra 99.7 9.9E-16 3.4E-20 131.9 13.3 143 31-228 31-219 (275)
63 4e2x_A TCAB9; kijanose, tetron 99.7 4.2E-16 1.4E-20 142.9 11.5 150 30-240 94-267 (416)
64 2zfu_A Nucleomethylin, cerebra 99.7 6.7E-16 2.3E-20 128.5 11.6 158 4-240 24-190 (215)
65 3mcz_A O-methyltransferase; ad 99.6 1.8E-15 6.1E-20 135.5 14.6 148 34-241 169-349 (352)
66 2ip2_A Probable phenazine-spec 99.6 2.8E-15 9.7E-20 133.3 15.5 148 32-240 157-333 (334)
67 3jwg_A HEN1, methyltransferase 99.6 1.1E-15 3.9E-20 127.5 11.9 138 33-225 19-189 (219)
68 3ofk_A Nodulation protein S; N 99.6 2.7E-15 9.2E-20 124.8 13.9 116 31-208 39-157 (216)
69 3cgg_A SAM-dependent methyltra 99.6 1.8E-15 6.1E-20 122.6 12.4 123 42-228 45-175 (195)
70 2avn_A Ubiquinone/menaquinone 99.6 1.4E-15 4.9E-20 130.6 12.3 141 1-208 13-155 (260)
71 3g2m_A PCZA361.24; SAM-depende 99.6 4.4E-15 1.5E-19 130.1 15.6 139 32-229 72-275 (299)
72 1qzz_A RDMB, aclacinomycin-10- 99.6 4.9E-15 1.7E-19 133.5 15.8 149 33-240 172-355 (374)
73 3e05_A Precorrin-6Y C5,15-meth 99.6 1.1E-14 3.8E-19 120.4 16.5 133 29-221 26-161 (204)
74 3thr_A Glycine N-methyltransfe 99.6 2.4E-15 8.3E-20 130.8 12.7 119 30-205 44-175 (293)
75 3orh_A Guanidinoacetate N-meth 99.6 3.1E-16 1.1E-20 133.8 6.7 164 4-227 15-209 (236)
76 3hm2_A Precorrin-6Y C5,15-meth 99.6 5E-15 1.7E-19 119.0 13.2 139 29-228 11-153 (178)
77 3njr_A Precorrin-6Y methylase; 99.6 1.1E-14 3.9E-19 121.5 15.7 136 30-228 42-180 (204)
78 1dus_A MJ0882; hypothetical pr 99.6 1.5E-14 5.1E-19 117.1 15.1 151 30-240 39-193 (194)
79 1zx0_A Guanidinoacetate N-meth 99.6 7.8E-16 2.7E-20 130.5 7.8 159 4-222 15-204 (236)
80 3lst_A CALO1 methyltransferase 99.6 5.3E-15 1.8E-19 132.8 13.5 146 32-240 173-347 (348)
81 1wzn_A SAM-dependent methyltra 99.6 1.1E-14 3.7E-19 123.8 14.7 136 7-203 3-143 (252)
82 1xdz_A Methyltransferase GIDB; 99.6 6.9E-15 2.4E-19 125.2 13.4 127 42-229 69-203 (240)
83 1tw3_A COMT, carminomycin 4-O- 99.6 1.7E-14 5.7E-19 129.6 16.2 150 33-241 173-356 (360)
84 3dp7_A SAM-dependent methyltra 99.6 4.5E-15 1.5E-19 134.2 12.4 140 42-239 178-353 (363)
85 3g5t_A Trans-aconitate 3-methy 99.6 3.4E-15 1.1E-19 130.8 11.2 117 32-205 26-149 (299)
86 4df3_A Fibrillarin-like rRNA/T 99.6 1.1E-14 3.6E-19 125.0 13.7 142 38-239 72-230 (233)
87 2gb4_A Thiopurine S-methyltran 99.6 8.8E-15 3E-19 126.5 13.3 143 40-228 65-227 (252)
88 2pxx_A Uncharacterized protein 99.6 2E-14 6.9E-19 118.5 14.8 130 31-222 32-177 (215)
89 2p8j_A S-adenosylmethionine-de 99.6 5.5E-15 1.9E-19 121.9 10.8 126 42-226 22-181 (209)
90 2kw5_A SLR1183 protein; struct 99.6 7.1E-15 2.4E-19 120.9 11.3 124 43-229 30-172 (202)
91 1l3i_A Precorrin-6Y methyltran 99.6 3.6E-14 1.2E-18 114.6 14.2 132 30-223 20-155 (192)
92 3m70_A Tellurite resistance pr 99.6 8.4E-15 2.9E-19 127.2 11.1 129 36-227 113-259 (286)
93 3g07_A 7SK snRNA methylphospha 99.6 6.3E-15 2.2E-19 129.4 10.2 155 43-228 46-269 (292)
94 4a6d_A Hydroxyindole O-methylt 99.6 4.7E-14 1.6E-18 127.3 16.0 147 33-240 169-345 (353)
95 3ggd_A SAM-dependent methyltra 99.6 9.6E-15 3.3E-19 123.8 10.3 125 41-229 54-220 (245)
96 3grz_A L11 mtase, ribosomal pr 99.6 3E-14 1E-18 117.8 12.4 135 42-240 59-196 (205)
97 3mti_A RRNA methylase; SAM-dep 99.6 2.4E-14 8.3E-19 116.3 11.3 130 41-229 20-170 (185)
98 2yxd_A Probable cobalt-precorr 99.6 7.4E-14 2.5E-18 112.1 13.9 130 30-225 22-154 (183)
99 3q87_B N6 adenine specific DNA 99.6 2.3E-14 7.9E-19 116.1 10.9 126 42-238 22-159 (170)
100 3evz_A Methyltransferase; NYSG 99.5 1.6E-13 5.3E-18 115.2 15.4 136 40-234 52-212 (230)
101 3m33_A Uncharacterized protein 99.5 1E-14 3.5E-19 122.9 8.0 117 42-228 47-167 (226)
102 3reo_A (ISO)eugenol O-methyltr 99.5 1.1E-13 3.7E-18 125.5 15.0 140 33-240 192-366 (368)
103 3g89_A Ribosomal RNA small sub 99.5 5.4E-14 1.9E-18 121.2 12.0 127 42-229 79-213 (249)
104 4dzr_A Protein-(glutamine-N5) 99.5 3.3E-15 1.1E-19 123.0 4.0 153 29-240 15-204 (215)
105 2b3t_A Protein methyltransfera 99.5 1.2E-13 4E-18 120.0 13.8 151 31-240 98-275 (276)
106 1fbn_A MJ fibrillarin homologu 99.5 8.4E-14 2.9E-18 117.7 12.5 139 36-240 67-227 (230)
107 3mq2_A 16S rRNA methyltransfer 99.5 2.4E-14 8.2E-19 119.4 8.7 140 36-229 20-185 (218)
108 1yzh_A TRNA (guanine-N(7)-)-me 99.5 1.6E-13 5.4E-18 114.5 13.6 128 42-226 40-180 (214)
109 3p9c_A Caffeic acid O-methyltr 99.5 2E-13 6.9E-18 123.6 14.9 139 33-239 190-363 (364)
110 3mb5_A SAM-dependent methyltra 99.5 1.1E-13 3.8E-18 118.1 12.2 133 33-226 83-220 (255)
111 1yb2_A Hypothetical protein TA 99.5 8.6E-14 3E-18 120.9 11.1 132 34-227 101-236 (275)
112 2pwy_A TRNA (adenine-N(1)-)-me 99.5 1.6E-13 5.5E-18 116.8 12.5 134 33-227 86-223 (258)
113 1jsx_A Glucose-inhibited divis 99.5 9.3E-14 3.2E-18 114.6 10.7 134 43-240 65-204 (207)
114 1fp1_D Isoliquiritigenin 2'-O- 99.5 1.3E-13 4.4E-18 124.8 12.2 141 33-240 198-372 (372)
115 3fpf_A Mtnas, putative unchara 99.5 4.1E-13 1.4E-17 118.9 14.8 141 37-240 116-263 (298)
116 3eey_A Putative rRNA methylase 99.5 1E-13 3.5E-18 113.7 10.2 134 41-229 20-174 (197)
117 3lpm_A Putative methyltransfer 99.5 2.4E-13 8.2E-18 117.0 12.9 137 35-228 40-201 (259)
118 3iv6_A Putative Zn-dependent a 99.5 1.1E-13 3.6E-18 120.7 10.4 138 4-205 9-148 (261)
119 2fca_A TRNA (guanine-N(7)-)-me 99.5 2.5E-13 8.7E-18 113.9 12.4 128 42-226 37-177 (213)
120 1fp2_A Isoflavone O-methyltran 99.5 2E-13 6.9E-18 122.6 11.8 132 41-240 186-352 (352)
121 3bgv_A MRNA CAP guanine-N7 met 99.5 2.9E-13 9.8E-18 119.3 12.3 125 43-218 34-168 (313)
122 2ld4_A Anamorsin; methyltransf 99.5 4.6E-13 1.6E-17 108.1 11.9 92 103-227 26-133 (176)
123 3id6_C Fibrillarin-like rRNA/T 99.5 1.2E-12 4.3E-17 112.0 15.1 147 33-240 63-230 (232)
124 3r0q_C Probable protein argini 99.5 1.7E-13 5.8E-18 124.8 9.9 139 8-205 28-169 (376)
125 1o54_A SAM-dependent O-methylt 99.4 8E-13 2.7E-17 114.7 12.8 134 33-227 102-238 (277)
126 2vdw_A Vaccinia virus capping 99.4 3.9E-13 1.3E-17 119.1 10.9 117 43-215 48-179 (302)
127 2fyt_A Protein arginine N-meth 99.4 3.2E-13 1.1E-17 121.4 10.4 114 31-202 52-168 (340)
128 3p2e_A 16S rRNA methylase; met 99.4 2.8E-13 9.7E-18 115.0 9.5 131 42-229 23-186 (225)
129 2nxc_A L11 mtase, ribosomal pr 99.4 1.2E-12 4.2E-17 112.7 13.5 125 42-230 119-246 (254)
130 2ipx_A RRNA 2'-O-methyltransfe 99.4 7.3E-13 2.5E-17 111.8 11.7 142 38-240 72-231 (233)
131 1nt2_A Fibrillarin-like PRE-rR 99.4 1.7E-12 5.7E-17 109.0 13.7 139 39-240 53-209 (210)
132 3lbf_A Protein-L-isoaspartate 99.4 5.9E-13 2E-17 110.2 10.2 111 31-206 65-175 (210)
133 2frn_A Hypothetical protein PH 99.4 1.8E-12 6.3E-17 113.1 13.6 128 32-224 116-253 (278)
134 3dmg_A Probable ribosomal RNA 99.4 1.6E-12 5.4E-17 118.9 13.3 118 31-208 219-343 (381)
135 1i9g_A Hypothetical protein RV 99.4 1.6E-12 5.3E-17 112.4 12.5 134 33-226 89-228 (280)
136 3q7e_A Protein arginine N-meth 99.4 4.7E-13 1.6E-17 120.6 9.4 114 32-203 55-171 (349)
137 1zg3_A Isoflavanone 4'-O-methy 99.4 9E-13 3.1E-17 118.6 10.9 131 42-240 192-358 (358)
138 3gdh_A Trimethylguanosine synt 99.4 2.6E-14 8.8E-19 121.0 0.8 131 42-231 77-222 (241)
139 3tma_A Methyltransferase; thum 99.4 1.2E-12 4.1E-17 117.8 11.7 142 31-229 191-340 (354)
140 2qe6_A Uncharacterized protein 99.4 2.3E-12 7.8E-17 112.5 13.1 117 32-207 65-198 (274)
141 3p9n_A Possible methyltransfer 99.4 5.1E-13 1.7E-17 109.2 8.4 109 42-208 43-156 (189)
142 3uwp_A Histone-lysine N-methyl 99.4 5.5E-13 1.9E-17 122.9 8.5 129 29-206 159-289 (438)
143 3u81_A Catechol O-methyltransf 99.4 8.3E-13 2.8E-17 110.8 8.2 127 42-224 57-193 (221)
144 1g8a_A Fibrillarin-like PRE-rR 99.4 1.1E-11 3.6E-16 104.0 14.7 140 38-240 68-226 (227)
145 3dxy_A TRNA (guanine-N(7)-)-me 99.4 1E-12 3.5E-17 111.0 8.4 123 43-222 34-171 (218)
146 2esr_A Methyltransferase; stru 99.4 4.6E-13 1.6E-17 108.0 5.7 140 31-230 18-161 (177)
147 1ixk_A Methyltransferase; open 99.4 3E-12 1E-16 113.8 10.8 136 35-226 110-273 (315)
148 2yvl_A TRMI protein, hypotheti 99.4 9.6E-12 3.3E-16 105.1 13.3 129 33-225 81-212 (248)
149 3bzb_A Uncharacterized protein 99.3 1.2E-11 4.1E-16 108.0 13.5 143 33-226 69-235 (281)
150 3bwc_A Spermidine synthase; SA 99.3 6.2E-12 2.1E-16 111.3 11.6 134 42-228 94-240 (304)
151 3tm4_A TRNA (guanine N2-)-meth 99.3 1.5E-11 5.2E-16 111.7 13.9 141 32-231 207-355 (373)
152 1p91_A Ribosomal RNA large sub 99.3 8.6E-12 2.9E-16 107.1 11.6 119 42-229 84-217 (269)
153 2h00_A Methyltransferase 10 do 99.3 1.2E-12 4E-17 111.9 6.0 133 43-231 65-241 (254)
154 3lec_A NADB-rossmann superfami 99.3 1.5E-11 5E-16 105.2 12.8 129 42-228 20-149 (230)
155 2y1w_A Histone-arginine methyl 99.3 8.3E-12 2.9E-16 112.3 11.7 114 31-203 38-153 (348)
156 1g6q_1 HnRNP arginine N-methyl 99.3 2E-12 6.9E-17 115.4 7.5 114 31-202 26-142 (328)
157 1vbf_A 231AA long hypothetical 99.3 7.7E-12 2.6E-16 104.9 10.5 110 31-207 58-167 (231)
158 2yxe_A Protein-L-isoaspartate 99.3 5.9E-12 2E-16 104.5 9.7 114 31-206 65-178 (215)
159 3ckk_A TRNA (guanine-N(7)-)-me 99.3 9.2E-12 3.2E-16 106.3 11.0 131 42-223 45-190 (235)
160 2ift_A Putative methylase HI07 99.3 2E-12 6.7E-17 107.4 6.5 109 43-208 53-166 (201)
161 2b25_A Hypothetical protein; s 99.3 9.6E-12 3.3E-16 110.9 11.3 135 32-216 94-230 (336)
162 2ozv_A Hypothetical protein AT 99.3 1.2E-11 4.1E-16 106.8 11.5 136 36-228 29-194 (260)
163 1dl5_A Protein-L-isoaspartate 99.3 6.4E-12 2.2E-16 111.4 10.1 115 30-206 62-176 (317)
164 3kr9_A SAM-dependent methyltra 99.3 2.5E-11 8.5E-16 103.5 12.9 128 42-228 14-143 (225)
165 3htx_A HEN1; HEN1, small RNA m 99.3 9.6E-12 3.3E-16 122.6 11.2 125 30-205 708-834 (950)
166 3ntv_A MW1564 protein; rossman 99.3 9.4E-12 3.2E-16 105.4 9.8 111 35-204 63-175 (232)
167 4dcm_A Ribosomal RNA large sub 99.3 1.5E-11 5E-16 112.2 11.5 129 32-216 211-345 (375)
168 1af7_A Chemotaxis receptor met 99.3 5.8E-12 2E-16 110.3 8.4 137 43-203 105-250 (274)
169 3fzg_A 16S rRNA methylase; met 99.3 1E-11 3.5E-16 103.5 9.1 127 42-228 48-187 (200)
170 3tfw_A Putative O-methyltransf 99.3 3.4E-11 1.2E-15 103.1 12.5 109 41-207 61-172 (248)
171 3gnl_A Uncharacterized protein 99.3 3E-11 1E-15 104.1 12.2 129 42-228 20-149 (244)
172 1ej0_A FTSJ; methyltransferase 99.3 9.5E-12 3.3E-16 98.5 8.2 118 41-226 20-159 (180)
173 2fpo_A Methylase YHHF; structu 99.3 6.9E-12 2.4E-16 104.1 7.5 118 32-208 42-163 (202)
174 3hp7_A Hemolysin, putative; st 99.3 1.2E-11 4E-16 109.3 9.4 129 34-228 75-232 (291)
175 3dr5_A Putative O-methyltransf 99.3 1E-11 3.5E-16 105.0 8.5 116 33-205 46-163 (221)
176 2pjd_A Ribosomal RNA small sub 99.3 9.7E-12 3.3E-16 111.5 8.8 118 31-208 184-306 (343)
177 2fhp_A Methylase, putative; al 99.3 5.1E-12 1.7E-16 102.0 6.3 120 31-208 31-157 (187)
178 3tr6_A O-methyltransferase; ce 99.3 3.7E-11 1.3E-15 100.3 11.2 108 42-207 63-176 (225)
179 2igt_A SAM dependent methyltra 99.2 2.2E-11 7.5E-16 109.3 9.8 134 33-223 142-299 (332)
180 2gpy_A O-methyltransferase; st 99.2 1.5E-11 5.1E-16 103.6 7.9 114 33-205 44-160 (233)
181 3opn_A Putative hemolysin; str 99.2 7.8E-12 2.7E-16 106.8 6.1 132 33-228 26-184 (232)
182 1o9g_A RRNA methyltransferase; 99.2 1E-11 3.5E-16 106.0 6.9 141 31-207 39-216 (250)
183 3duw_A OMT, O-methyltransferas 99.2 9.3E-11 3.2E-15 97.8 12.5 108 41-206 56-168 (223)
184 1i1n_A Protein-L-isoaspartate 99.2 4E-11 1.4E-15 100.3 10.2 115 33-207 65-184 (226)
185 1jg1_A PIMT;, protein-L-isoasp 99.2 2.5E-11 8.5E-16 102.6 9.0 111 31-206 79-190 (235)
186 1u2z_A Histone-lysine N-methyl 99.2 3.1E-11 1.1E-15 112.0 10.4 119 31-205 230-359 (433)
187 1ws6_A Methyltransferase; stru 99.2 2.9E-12 9.9E-17 101.9 3.0 104 43-208 41-150 (171)
188 1wy7_A Hypothetical protein PH 99.2 7.5E-10 2.6E-14 91.1 17.1 127 40-231 46-178 (207)
189 2yxl_A PH0851 protein, 450AA l 99.2 9.1E-11 3.1E-15 109.1 12.9 135 35-225 251-416 (450)
190 2vdv_E TRNA (guanine-N(7)-)-me 99.2 1.2E-10 4.1E-15 99.3 11.2 116 42-219 48-190 (246)
191 2bm8_A Cephalosporin hydroxyla 99.2 1.3E-11 4.3E-16 105.3 5.1 120 43-223 81-214 (236)
192 2pbf_A Protein-L-isoaspartate 99.2 4.4E-11 1.5E-15 100.1 8.2 118 33-206 68-194 (227)
193 3giw_A Protein of unknown func 99.2 1.1E-10 3.6E-15 102.4 10.5 85 96-207 104-202 (277)
194 3a27_A TYW2, uncharacterized p 99.2 1.8E-10 6E-15 100.2 11.7 106 41-208 117-222 (272)
195 1r18_A Protein-L-isoaspartate( 99.2 6.8E-11 2.3E-15 99.3 8.5 119 32-206 71-195 (227)
196 3r3h_A O-methyltransferase, SA 99.2 8.3E-12 2.9E-16 106.9 2.9 107 42-206 59-171 (242)
197 2qm3_A Predicted methyltransfe 99.2 2.9E-10 9.9E-15 103.1 13.2 126 42-226 171-307 (373)
198 3c3p_A Methyltransferase; NP_9 99.2 2.7E-11 9.4E-16 100.4 5.7 105 42-205 55-160 (210)
199 3b3j_A Histone-arginine methyl 99.2 6.4E-11 2.2E-15 111.3 8.8 113 32-203 147-261 (480)
200 3ajd_A Putative methyltransfer 99.2 1.1E-10 3.8E-15 101.4 9.6 135 35-225 75-238 (274)
201 3sso_A Methyltransferase; macr 99.1 2.4E-11 8.4E-16 111.6 5.5 132 8-207 183-326 (419)
202 4hc4_A Protein arginine N-meth 99.1 1E-10 3.6E-15 106.7 9.1 102 42-202 82-186 (376)
203 3adn_A Spermidine synthase; am 99.1 4.1E-10 1.4E-14 99.4 12.3 142 43-240 83-244 (294)
204 1inl_A Spermidine synthase; be 99.1 4.8E-10 1.7E-14 98.8 12.0 144 43-240 90-251 (296)
205 1nv8_A HEMK protein; class I a 99.1 1.7E-10 5.9E-15 101.1 8.8 127 32-218 112-264 (284)
206 1ne2_A Hypothetical protein TA 99.1 4.7E-10 1.6E-14 92.1 10.8 120 40-228 48-170 (200)
207 2xyq_A Putative 2'-O-methyl tr 99.1 1.9E-10 6.6E-15 101.5 9.0 75 151-226 106-195 (290)
208 2hnk_A SAM-dependent O-methylt 99.1 2.4E-10 8.3E-15 96.7 9.1 109 39-205 56-181 (239)
209 2plw_A Ribosomal RNA methyltra 99.1 2.5E-10 8.6E-15 93.4 8.8 117 41-225 20-176 (201)
210 1iy9_A Spermidine synthase; ro 99.1 6E-10 2.1E-14 97.2 11.5 131 43-227 75-217 (275)
211 1sui_A Caffeoyl-COA O-methyltr 99.1 8.2E-11 2.8E-15 101.0 5.7 106 42-205 78-190 (247)
212 2pt6_A Spermidine synthase; tr 99.1 5.9E-10 2E-14 99.4 11.3 131 43-227 116-258 (321)
213 3m4x_A NOL1/NOP2/SUN family pr 99.1 2E-10 7E-15 107.2 8.2 136 35-226 97-261 (456)
214 3cbg_A O-methyltransferase; cy 99.1 1.6E-10 5.4E-15 97.9 6.5 107 42-206 71-183 (232)
215 1zq9_A Probable dimethyladenos 99.1 5.9E-10 2E-14 97.6 10.3 113 30-202 15-144 (285)
216 2b78_A Hypothetical protein SM 99.1 3.9E-10 1.3E-14 102.9 9.5 126 42-223 211-357 (385)
217 2avd_A Catechol-O-methyltransf 99.1 1.2E-10 4.1E-15 97.4 5.5 107 42-206 68-180 (229)
218 2frx_A Hypothetical protein YE 99.1 5.7E-10 1.9E-14 104.8 10.6 127 37-219 109-266 (479)
219 4azs_A Methyltransferase WBDD; 99.1 1.2E-10 4.3E-15 111.2 6.0 120 42-220 65-200 (569)
220 2b2c_A Spermidine synthase; be 99.1 7E-10 2.4E-14 98.8 10.4 130 43-228 108-251 (314)
221 3m6w_A RRNA methylase; rRNA me 99.1 2.5E-10 8.4E-15 106.9 7.8 135 35-226 93-257 (464)
222 3c0k_A UPF0064 protein YCCW; P 99.0 8.8E-10 3E-14 100.6 11.2 129 42-227 219-369 (396)
223 2i7c_A Spermidine synthase; tr 99.0 1.7E-09 5.8E-14 94.6 12.4 133 42-228 77-221 (283)
224 3k6r_A Putative transferase PH 99.0 1.1E-09 3.7E-14 96.1 11.1 128 32-223 116-252 (278)
225 1sqg_A SUN protein, FMU protei 99.0 8.9E-10 3.1E-14 101.7 11.0 133 34-224 237-400 (429)
226 1uir_A Polyamine aminopropyltr 99.0 9.3E-10 3.2E-14 97.7 10.6 130 43-226 77-223 (314)
227 3c3y_A Pfomt, O-methyltransfer 99.0 1.7E-10 6E-15 98.1 5.6 106 42-205 69-181 (237)
228 1wxx_A TT1595, hypothetical pr 99.0 6.2E-10 2.1E-14 101.2 9.4 125 43-226 209-354 (382)
229 4dmg_A Putative uncharacterize 99.0 1.3E-09 4.5E-14 99.9 11.5 127 42-228 213-357 (393)
230 2o07_A Spermidine synthase; st 99.0 1.5E-09 5E-14 96.2 11.3 132 42-227 94-237 (304)
231 2yx1_A Hypothetical protein MJ 99.0 7.5E-10 2.6E-14 99.1 9.5 120 42-227 194-316 (336)
232 2wa2_A Non-structural protein 99.0 1E-10 3.4E-15 102.5 3.6 113 34-208 73-196 (276)
233 2cmg_A Spermidine synthase; tr 99.0 9.8E-10 3.3E-14 95.4 9.3 133 43-239 72-214 (262)
234 3v97_A Ribosomal RNA large sub 99.0 4.2E-10 1.4E-14 110.3 7.8 128 43-226 539-680 (703)
235 2oxt_A Nucleoside-2'-O-methylt 99.0 1.3E-10 4.6E-15 101.1 3.7 113 34-208 65-188 (265)
236 2f8l_A Hypothetical protein LM 99.0 1.2E-09 4.3E-14 97.7 9.8 128 40-221 127-279 (344)
237 1xj5_A Spermidine synthase 1; 99.0 5.7E-10 2E-14 100.2 7.3 110 42-204 119-234 (334)
238 3dou_A Ribosomal RNA large sub 99.0 1E-09 3.5E-14 90.6 7.7 114 41-225 23-161 (191)
239 1uwv_A 23S rRNA (uracil-5-)-me 99.0 9.7E-09 3.3E-13 95.0 15.2 136 31-229 274-415 (433)
240 2as0_A Hypothetical protein PH 99.0 6E-10 2.1E-14 101.7 6.6 124 42-222 216-360 (396)
241 2nyu_A Putative ribosomal RNA 99.0 9.1E-10 3.1E-14 89.6 7.0 124 41-224 20-166 (196)
242 1mjf_A Spermidine synthase; sp 99.0 3.5E-09 1.2E-13 92.5 10.9 141 42-239 74-237 (281)
243 3gjy_A Spermidine synthase; AP 98.9 6.8E-09 2.3E-13 92.6 11.9 126 44-227 90-227 (317)
244 2h1r_A Dimethyladenosine trans 98.9 9.9E-09 3.4E-13 90.5 11.5 89 30-179 29-117 (299)
245 2p41_A Type II methyltransfera 98.9 3.3E-09 1.1E-13 94.0 8.2 56 151-208 132-194 (305)
246 3lcv_B Sisomicin-gentamicin re 98.9 2.6E-08 8.8E-13 86.7 13.2 125 42-226 131-270 (281)
247 3k0b_A Predicted N6-adenine-sp 98.8 4.2E-08 1.4E-12 89.9 11.8 154 32-229 190-370 (393)
248 2okc_A Type I restriction enzy 98.8 2.7E-08 9.1E-13 92.2 9.9 134 30-206 158-308 (445)
249 3frh_A 16S rRNA methylase; met 98.8 2.2E-07 7.5E-12 79.9 14.8 102 42-205 104-206 (253)
250 1yub_A Ermam, rRNA methyltrans 98.7 5E-10 1.7E-14 95.6 -2.2 111 31-203 17-143 (245)
251 1qam_A ERMC' methyltransferase 98.7 5E-08 1.7E-12 83.4 10.1 86 29-176 16-102 (244)
252 3bt7_A TRNA (uracil-5-)-methyl 98.7 3.6E-08 1.2E-12 89.2 9.3 131 31-229 202-352 (369)
253 3ldg_A Putative uncharacterize 98.7 1.2E-07 4E-12 86.7 12.6 154 31-228 182-362 (384)
254 2ih2_A Modification methylase 98.7 4.4E-08 1.5E-12 89.1 9.4 125 30-220 26-186 (421)
255 2b9e_A NOL1/NOP2/SUN domain fa 98.7 1.2E-07 3.9E-12 84.2 11.4 133 35-224 94-261 (309)
256 3ldu_A Putative methylase; str 98.6 1.6E-07 5.4E-12 85.7 11.0 154 31-228 183-363 (385)
257 2jjq_A Uncharacterized RNA met 98.6 3.5E-07 1.2E-11 84.5 13.4 123 41-229 288-410 (425)
258 3gru_A Dimethyladenosine trans 98.6 8.4E-08 2.9E-12 84.7 8.7 89 30-179 37-125 (295)
259 3b5i_A S-adenosyl-L-methionine 98.6 2.9E-07 9.8E-12 83.9 11.9 133 44-204 53-224 (374)
260 3v97_A Ribosomal RNA large sub 98.5 8.4E-07 2.9E-11 86.9 13.8 156 31-229 178-367 (703)
261 3tqs_A Ribosomal RNA small sub 98.5 4.8E-07 1.7E-11 78.1 9.7 85 30-176 16-104 (255)
262 2ar0_A M.ecoki, type I restric 98.5 5E-07 1.7E-11 85.9 10.3 155 31-228 157-342 (541)
263 3fut_A Dimethyladenosine trans 98.4 5E-07 1.7E-11 78.8 8.5 88 29-179 33-121 (271)
264 4gqb_A Protein arginine N-meth 98.4 7.5E-07 2.6E-11 86.1 9.0 141 2-202 320-464 (637)
265 2qy6_A UPF0209 protein YFCK; s 98.4 7.9E-07 2.7E-11 76.9 7.8 73 151-225 151-232 (257)
266 1m6e_X S-adenosyl-L-methionnin 98.4 1.5E-06 5.1E-11 78.7 9.6 124 43-205 51-209 (359)
267 3lkd_A Type I restriction-modi 98.4 5.6E-06 1.9E-10 78.7 14.0 145 32-229 206-389 (542)
268 3khk_A Type I restriction-modi 98.3 2.8E-06 9.5E-11 80.9 11.5 157 30-229 232-427 (544)
269 2qfm_A Spermine synthase; sper 98.3 2.2E-06 7.4E-11 77.7 9.7 130 43-225 188-339 (364)
270 3axs_A Probable N(2),N(2)-dime 98.3 9.4E-07 3.2E-11 80.9 6.8 105 42-205 51-158 (392)
271 3uzu_A Ribosomal RNA small sub 98.2 2.5E-06 8.4E-11 74.6 8.2 76 30-165 29-105 (279)
272 3ua3_A Protein arginine N-meth 98.2 1.1E-06 3.6E-11 85.6 6.1 142 3-202 376-531 (745)
273 1m6y_A S-adenosyl-methyltransf 98.2 9.9E-07 3.4E-11 78.0 4.8 89 32-178 15-108 (301)
274 2dul_A N(2),N(2)-dimethylguano 98.2 1E-06 3.4E-11 80.3 4.7 116 43-204 47-163 (378)
275 3evf_A RNA-directed RNA polyme 98.2 2.7E-06 9.2E-11 74.1 6.4 63 154-216 126-197 (277)
276 1qyr_A KSGA, high level kasuga 98.1 2.9E-06 9.9E-11 73.0 5.5 85 30-177 8-99 (252)
277 3ftd_A Dimethyladenosine trans 98.1 1.4E-05 4.9E-10 68.5 9.5 76 29-166 17-92 (249)
278 2r6z_A UPF0341 protein in RSP 98.1 1.1E-06 3.8E-11 75.9 2.1 85 36-178 76-171 (258)
279 3o4f_A Spermidine synthase; am 98.0 4.9E-05 1.7E-09 66.9 12.0 144 43-239 83-243 (294)
280 2efj_A 3,7-dimethylxanthine me 98.0 7.5E-06 2.6E-10 74.7 5.8 73 156-228 137-292 (384)
281 3ll7_A Putative methyltransfer 97.9 2.7E-06 9.2E-11 78.3 2.5 74 43-175 93-170 (410)
282 4auk_A Ribosomal RNA large sub 97.9 6.2E-05 2.1E-09 68.3 10.8 112 41-222 209-334 (375)
283 3cvo_A Methyltransferase-like 97.9 6.1E-05 2.1E-09 62.8 9.4 77 97-204 51-153 (202)
284 2wk1_A NOVP; transferase, O-me 97.8 0.0001 3.5E-09 64.5 10.6 85 144-231 183-274 (282)
285 3gcz_A Polyprotein; flavivirus 97.8 1.2E-05 4.1E-10 70.2 4.5 53 164-216 152-214 (282)
286 3ufb_A Type I restriction-modi 97.8 0.00023 7.8E-09 67.4 13.2 156 29-229 203-393 (530)
287 2vz8_A Fatty acid synthase; tr 97.7 1.2E-05 4.2E-10 88.1 3.1 130 42-226 1239-1393(2512)
288 4fzv_A Putative methyltransfer 97.7 0.00012 3.9E-09 66.3 8.8 119 35-208 140-287 (359)
289 2oyr_A UPF0341 protein YHIQ; a 97.7 2.3E-05 7.8E-10 67.8 3.7 98 32-180 75-176 (258)
290 3s1s_A Restriction endonucleas 97.5 0.00052 1.8E-08 67.9 10.9 136 42-228 320-496 (878)
291 1wg8_A Predicted S-adenosylmet 97.5 0.00013 4.5E-09 63.8 6.0 85 31-178 10-99 (285)
292 2px2_A Genome polyprotein [con 97.5 0.00048 1.7E-08 59.4 9.1 61 153-215 125-195 (269)
293 3vyw_A MNMC2; tRNA wobble urid 97.4 0.00036 1.2E-08 61.7 8.2 85 152-239 168-258 (308)
294 3eld_A Methyltransferase; flav 97.3 0.00035 1.2E-08 61.4 6.3 51 165-215 144-203 (300)
295 3lkz_A Non-structural protein 97.2 0.0015 5.1E-08 57.4 9.3 123 33-216 84-217 (321)
296 3c6k_A Spermine synthase; sper 97.1 0.002 6.7E-08 58.6 9.6 131 42-224 204-355 (381)
297 3p8z_A Mtase, non-structural p 96.9 0.0094 3.2E-07 50.9 11.2 115 33-208 68-189 (267)
298 2zig_A TTHA0409, putative modi 96.3 0.0034 1.1E-07 54.7 4.7 54 32-118 225-278 (297)
299 3tka_A Ribosomal RNA small sub 96.1 0.0053 1.8E-07 54.9 5.0 55 31-114 45-99 (347)
300 3r24_A NSP16, 2'-O-methyl tran 95.4 0.073 2.5E-06 46.9 9.1 71 154-227 156-240 (344)
301 2zig_A TTHA0409, putative modi 95.0 0.056 1.9E-06 46.8 7.2 78 151-228 21-136 (297)
302 2k4m_A TR8_protein, UPF0146 pr 94.7 0.0084 2.9E-07 47.5 1.1 39 42-111 34-73 (153)
303 3tos_A CALS11; methyltransfera 94.2 0.16 5.6E-06 43.5 8.2 75 150-226 158-245 (257)
304 3pvc_A TRNA 5-methylaminomethy 94.2 0.13 4.5E-06 49.6 8.4 75 151-226 149-231 (689)
305 1g60_A Adenine-specific methyl 94.1 0.054 1.8E-06 46.0 5.0 53 33-118 203-255 (260)
306 1i4w_A Mitochondrial replicati 93.5 0.11 3.8E-06 46.5 6.1 56 32-117 41-102 (353)
307 3ps9_A TRNA 5-methylaminomethy 93.5 0.21 7.3E-06 47.9 8.5 75 151-226 157-239 (676)
308 1boo_A Protein (N-4 cytosine-s 92.5 0.29 9.9E-06 42.9 7.2 79 150-228 13-120 (323)
309 3g7u_A Cytosine-specific methy 92.0 0.84 2.9E-05 41.0 9.8 43 45-118 3-45 (376)
310 2uyo_A Hypothetical protein ML 90.8 2.9 0.0001 36.4 11.8 106 45-207 104-220 (310)
311 1rjd_A PPM1P, carboxy methyl t 90.6 0.76 2.6E-05 40.6 7.9 126 42-205 96-232 (334)
312 1g60_A Adenine-specific methyl 90.3 0.44 1.5E-05 40.2 5.8 76 153-228 6-99 (260)
313 2oo3_A Protein involved in cat 90.1 0.42 1.5E-05 41.5 5.6 122 44-226 92-224 (283)
314 1f8f_A Benzyl alcohol dehydrog 88.9 0.76 2.6E-05 40.5 6.5 32 168-205 258-289 (371)
315 1g55_A DNA cytosine methyltran 88.0 0.94 3.2E-05 40.0 6.5 46 44-118 2-47 (343)
316 1kol_A Formaldehyde dehydrogen 87.8 1.1 3.7E-05 39.9 6.8 39 167-205 253-300 (398)
317 2dph_A Formaldehyde dismutase; 87.2 1 3.5E-05 40.2 6.3 38 168-205 254-299 (398)
318 3fpc_A NADP-dependent alcohol 86.3 1.7 5.8E-05 37.9 7.1 32 167-204 234-265 (352)
319 3two_A Mannitol dehydrogenase; 86.2 0.82 2.8E-05 39.9 5.0 95 37-205 170-265 (348)
320 4ej6_A Putative zinc-binding d 85.6 0.93 3.2E-05 40.1 5.1 33 167-205 252-284 (370)
321 3qv2_A 5-cytosine DNA methyltr 85.5 4.4 0.00015 35.5 9.4 47 43-118 9-56 (327)
322 3m6i_A L-arabinitol 4-dehydrog 85.5 3 0.0001 36.4 8.4 34 166-205 250-283 (363)
323 2c7p_A Modification methylase 85.3 5.6 0.00019 34.8 10.0 45 43-118 10-54 (327)
324 1eg2_A Modification methylase 83.3 1.8 6.2E-05 37.8 5.9 77 152-228 39-140 (319)
325 2py6_A Methyltransferase FKBM; 83.2 1.3 4.3E-05 40.1 4.9 50 41-118 224-273 (409)
326 3s2e_A Zinc-containing alcohol 81.7 1.9 6.5E-05 37.3 5.4 32 168-205 232-263 (340)
327 1pqw_A Polyketide synthase; ro 81.4 2.9 9.8E-05 33.0 5.9 32 167-205 106-137 (198)
328 1zkd_A DUF185; NESG, RPR58, st 81.4 5.2 0.00018 36.1 8.2 57 39-118 76-132 (387)
329 3uog_A Alcohol dehydrogenase; 80.7 1.5 5.2E-05 38.5 4.4 32 167-205 256-287 (363)
330 3goh_A Alcohol dehydrogenase, 80.4 1.7 5.7E-05 37.2 4.5 94 37-205 136-229 (315)
331 1boo_A Protein (N-4 cytosine-s 79.6 1 3.5E-05 39.3 2.9 45 42-118 251-295 (323)
332 1uuf_A YAHK, zinc-type alcohol 79.0 2.4 8.3E-05 37.4 5.2 33 167-205 256-288 (369)
333 3ubt_Y Modification methylase 78.6 7.6 0.00026 33.3 8.2 43 45-118 1-43 (331)
334 1pl8_A Human sorbitol dehydrog 78.5 2.7 9.2E-05 36.7 5.3 33 167-205 241-273 (356)
335 3gms_A Putative NADPH:quinone 78.5 3.1 0.00011 36.0 5.7 51 36-115 137-187 (340)
336 2fzw_A Alcohol dehydrogenase c 78.4 6.7 0.00023 34.2 7.9 32 167-204 259-291 (373)
337 3uko_A Alcohol dehydrogenase c 78.3 5.1 0.00017 35.2 7.1 33 167-205 262-295 (378)
338 1p0f_A NADP-dependent alcohol 78.0 6.3 0.00021 34.5 7.6 33 167-205 260-293 (373)
339 3ip1_A Alcohol dehydrogenase, 77.7 7 0.00024 34.7 7.9 18 99-116 240-257 (404)
340 1wg8_A Predicted S-adenosylmet 77.2 1.6 5.4E-05 37.9 3.3 42 181-222 209-253 (285)
341 1e3j_A NADP(H)-dependent ketos 76.7 6 0.0002 34.3 7.0 33 167-205 239-271 (352)
342 2jhf_A Alcohol dehydrogenase E 76.6 7.4 0.00025 34.0 7.6 32 167-204 260-292 (374)
343 4h0n_A DNMT2; SAH binding, tra 76.2 9.7 0.00033 33.4 8.2 45 45-118 4-48 (333)
344 1cdo_A Alcohol dehydrogenase; 76.1 7.4 0.00025 34.0 7.5 31 168-204 262-293 (374)
345 1eg2_A Modification methylase 75.1 2.4 8.1E-05 37.1 3.9 53 33-118 233-288 (319)
346 1v3u_A Leukotriene B4 12- hydr 74.5 4.7 0.00016 34.6 5.7 31 167-204 213-243 (333)
347 4dcm_A Ribosomal RNA large sub 73.9 46 0.0016 29.2 12.3 122 33-218 27-152 (375)
348 2d8a_A PH0655, probable L-thre 73.7 8.5 0.00029 33.3 7.2 33 167-205 235-267 (348)
349 1e3i_A Alcohol dehydrogenase, 73.6 9.1 0.00031 33.4 7.4 31 168-204 265-296 (376)
350 4b7c_A Probable oxidoreductase 73.3 4 0.00014 35.1 5.0 31 167-204 217-247 (336)
351 1rjw_A ADH-HT, alcohol dehydro 72.3 8.2 0.00028 33.3 6.7 32 167-204 229-260 (339)
352 2hwk_A Helicase NSP2; rossman 71.7 8.6 0.0003 33.5 6.5 58 167-225 205-278 (320)
353 2c0c_A Zinc binding alcohol de 70.9 8 0.00028 33.7 6.4 32 167-205 230-261 (362)
354 3qwb_A Probable quinone oxidor 70.8 5.2 0.00018 34.4 5.1 31 167-204 216-246 (334)
355 2j3h_A NADP-dependent oxidored 70.4 6.5 0.00022 33.8 5.6 31 167-204 224-254 (345)
356 4eye_A Probable oxidoreductase 70.0 5.3 0.00018 34.6 5.0 32 167-205 226-257 (342)
357 3jyn_A Quinone oxidoreductase; 69.8 5.1 0.00017 34.4 4.8 32 167-205 208-239 (325)
358 2h6e_A ADH-4, D-arabinose 1-de 68.6 4.2 0.00015 35.2 4.0 32 168-205 238-269 (344)
359 1jvb_A NAD(H)-dependent alcoho 65.9 6.6 0.00022 34.0 4.7 32 167-204 239-270 (347)
360 3jv7_A ADH-A; dehydrogenase, n 65.8 6.8 0.00023 33.8 4.8 33 167-205 238-270 (345)
361 1yb5_A Quinone oxidoreductase; 64.8 10 0.00035 32.9 5.8 31 167-204 238-268 (351)
362 4dvj_A Putative zinc-dependent 64.7 5.7 0.00019 34.8 4.1 33 166-204 237-269 (363)
363 3tka_A Ribosomal RNA small sub 64.5 5.2 0.00018 35.6 3.7 38 181-218 250-290 (347)
364 4a2c_A Galactitol-1-phosphate 63.5 21 0.00071 30.5 7.5 33 167-205 228-260 (346)
365 4f3n_A Uncharacterized ACR, CO 63.4 6.3 0.00021 36.1 4.2 50 44-118 138-187 (432)
366 2eih_A Alcohol dehydrogenase; 63.4 13 0.00046 31.9 6.2 31 167-204 234-264 (343)
367 1qor_A Quinone oxidoreductase; 63.3 7.7 0.00026 33.1 4.6 32 167-205 208-239 (327)
368 1piw_A Hypothetical zinc-type 63.3 6.1 0.00021 34.4 4.0 47 39-115 175-221 (360)
369 3nx4_A Putative oxidoreductase 62.6 9.8 0.00033 32.3 5.1 33 166-205 209-241 (324)
370 2km1_A Protein DRE2; yeast, an 61.7 5.4 0.00018 30.7 2.9 59 163-224 54-114 (136)
371 3trk_A Nonstructural polyprote 61.6 9.7 0.00033 32.9 4.7 43 166-208 209-262 (324)
372 1yqd_A Sinapyl alcohol dehydro 61.3 5.4 0.00019 34.9 3.3 31 168-204 251-281 (366)
373 2dq4_A L-threonine 3-dehydroge 61.0 6.1 0.00021 34.1 3.6 32 167-204 230-261 (343)
374 1wly_A CAAR, 2-haloacrylate re 61.0 12 0.00042 32.0 5.5 32 167-205 213-244 (333)
375 2hcy_A Alcohol dehydrogenase 1 60.6 6.2 0.00021 34.1 3.5 32 168-205 238-269 (347)
376 1vj0_A Alcohol dehydrogenase, 59.8 7.6 0.00026 34.2 4.0 32 168-205 267-298 (380)
377 4dup_A Quinone oxidoreductase; 58.5 9.8 0.00033 33.0 4.5 31 167-204 234-264 (353)
378 2j8z_A Quinone oxidoreductase; 57.6 16 0.00053 31.7 5.6 32 167-205 230-261 (354)
379 4eez_A Alcohol dehydrogenase 1 57.6 28 0.00095 29.7 7.2 33 167-205 231-263 (348)
380 1m6y_A S-adenosyl-methyltransf 55.5 7.6 0.00026 33.5 3.2 37 181-217 221-260 (301)
381 2zb4_A Prostaglandin reductase 54.9 16 0.00056 31.4 5.3 31 168-205 230-260 (357)
382 3me5_A Cytosine-specific methy 54.4 42 0.0014 30.9 8.2 43 44-117 88-130 (482)
383 2cf5_A Atccad5, CAD, cinnamyl 53.3 6.5 0.00022 34.2 2.4 31 168-204 244-274 (357)
384 1jdq_A TM006 protein, hypothet 53.3 58 0.002 23.1 8.0 50 188-237 43-95 (98)
385 1lss_A TRK system potassium up 51.3 62 0.0021 22.9 9.0 51 167-222 68-118 (140)
386 3tqh_A Quinone oxidoreductase; 49.4 23 0.00078 30.1 5.3 32 167-205 214-245 (321)
387 1ej6_A Lambda2; icosahedral, n 49.1 9.8 0.00033 38.8 3.1 50 150-199 863-918 (1289)
388 3krt_A Crotonyl COA reductase; 48.8 26 0.00088 31.5 5.7 31 167-204 313-343 (456)
389 3dmg_A Probable ribosomal RNA 48.3 1.2E+02 0.004 26.7 9.9 43 166-208 99-142 (381)
390 3gaz_A Alcohol dehydrogenase s 47.1 21 0.0007 30.8 4.6 31 167-204 215-245 (343)
391 3iei_A Leucine carboxyl methyl 46.8 1.4E+02 0.0049 25.8 13.6 78 150-228 163-281 (334)
392 3fbg_A Putative arginate lyase 46.4 16 0.00053 31.5 3.7 33 166-204 215-247 (346)
393 2qrv_A DNA (cytosine-5)-methyl 46.2 24 0.00081 30.3 4.8 44 42-117 14-60 (295)
394 1tt7_A YHFP; alcohol dehydroge 45.8 18 0.00061 30.8 4.0 31 167-204 216-246 (330)
395 1xa0_A Putative NADPH dependen 44.1 24 0.00082 29.9 4.6 31 167-204 215-245 (328)
396 1pjc_A Protein (L-alanine dehy 42.8 7.2 0.00025 34.3 1.0 21 97-117 190-210 (361)
397 1iz0_A Quinone oxidoreductase; 41.9 8.2 0.00028 32.6 1.2 30 167-204 188-217 (302)
398 2eez_A Alanine dehydrogenase; 41.8 8.4 0.00029 34.0 1.2 38 168-205 229-266 (369)
399 3fwz_A Inner membrane protein 40.6 1E+02 0.0035 22.4 9.4 89 97-223 30-122 (140)
400 2b5w_A Glucose dehydrogenase; 39.6 71 0.0024 27.4 7.0 32 168-205 242-273 (357)
401 2cdc_A Glucose dehydrogenase g 38.6 35 0.0012 29.5 4.8 33 167-205 245-278 (366)
402 2zwa_A Leucine carboxyl methyl 38.4 1.8E+02 0.0062 27.5 10.2 77 150-228 188-309 (695)
403 2vhw_A Alanine dehydrogenase; 38.0 8.8 0.0003 34.0 0.8 19 97-115 191-209 (377)
404 4eso_A Putative oxidoreductase 36.9 54 0.0018 26.6 5.5 78 97-205 32-138 (255)
405 2vn8_A Reticulon-4-interacting 34.4 12 0.00042 32.6 1.1 35 167-206 247-281 (375)
406 3l9w_A Glutathione-regulated p 34.3 2.2E+02 0.0075 25.2 9.5 88 97-222 27-118 (413)
407 1id1_A Putative potassium chan 34.0 1.4E+02 0.0047 21.9 9.0 67 151-221 50-120 (153)
408 4a0s_A Octenoyl-COA reductase/ 33.1 55 0.0019 29.1 5.3 31 167-204 305-335 (447)
409 4gua_A Non-structural polyprot 32.2 69 0.0024 30.5 5.7 43 166-208 219-272 (670)
410 3iht_A S-adenosyl-L-methionine 31.6 58 0.002 25.8 4.4 26 32-58 30-55 (174)
411 1wma_A Carbonyl reductase [NAD 30.3 65 0.0022 25.7 4.9 22 97-118 29-50 (276)
412 3oig_A Enoyl-[acyl-carrier-pro 28.6 2.2E+02 0.0077 22.7 8.9 82 97-205 33-147 (266)
413 1je3_A EC005, hypothetical 8.6 28.5 1.2E+02 0.0041 21.4 5.4 48 188-236 44-94 (97)
414 3o26_A Salutaridine reductase; 28.4 1.7E+02 0.0058 23.7 7.3 55 97-178 36-101 (311)
415 3ioy_A Short-chain dehydrogena 28.2 2.6E+02 0.009 23.3 9.2 22 97-118 32-53 (319)
416 3iyl_W VP1; non-enveloped viru 28.0 30 0.001 35.6 2.6 49 152-200 872-926 (1299)
417 3l4b_C TRKA K+ channel protien 27.5 1.7E+02 0.006 22.7 7.0 72 97-204 23-98 (218)
418 1zsy_A Mitochondrial 2-enoyl t 26.3 1.7E+02 0.006 24.8 7.2 30 168-204 240-269 (357)
419 3grk_A Enoyl-(acyl-carrier-pro 26.3 2.3E+02 0.008 23.3 7.9 20 186-205 150-169 (293)
420 3lvj_C Sulfurtransferase TUSA; 25.9 1.5E+02 0.0052 19.8 7.5 48 188-236 27-77 (82)
421 3svt_A Short-chain type dehydr 25.7 1.9E+02 0.0064 23.5 7.1 22 97-118 35-56 (281)
422 3c85_A Putative glutathione-re 25.6 2.1E+02 0.0073 21.4 10.2 53 167-223 104-156 (183)
423 4a27_A Synaptic vesicle membra 25.4 48 0.0016 28.4 3.3 32 167-205 207-238 (349)
424 3i6i_A Putative leucoanthocyan 25.4 1.4E+02 0.0049 24.9 6.4 75 151-226 61-158 (346)
425 3gqv_A Enoyl reductase; medium 24.5 97 0.0033 26.7 5.2 32 167-204 230-262 (371)
426 4e6p_A Probable sorbitol dehyd 24.0 1.6E+02 0.0054 23.6 6.2 20 97-116 32-51 (259)
427 2g1u_A Hypothetical protein TM 23.6 1.6E+02 0.0054 21.6 5.7 51 167-221 83-133 (155)
428 3llv_A Exopolyphosphatase-rela 23.4 2E+02 0.007 20.4 9.6 86 97-221 29-118 (141)
429 3k31_A Enoyl-(acyl-carrier-pro 21.3 2.6E+02 0.0088 23.0 7.1 20 186-205 149-168 (296)
430 3swr_A DNA (cytosine-5)-methyl 21.3 4.1E+02 0.014 26.8 9.5 46 42-118 538-584 (1002)
431 2hfq_A Hypothetical protein; A 21.1 62 0.0021 23.6 2.6 53 168-226 41-104 (109)
432 4ft4_B DNA (cytosine-5)-methyl 20.8 1.9E+02 0.0065 27.8 6.9 51 42-117 210-260 (784)
433 3fni_A Putative diflavin flavo 20.5 2.3E+02 0.008 21.1 6.2 56 168-223 56-118 (159)
434 3ggo_A Prephenate dehydrogenas 20.4 3.8E+02 0.013 22.5 8.4 33 168-203 94-126 (314)
No 1
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}
Probab=99.83 E-value=6.4e-20 Score=154.74 Aligned_cols=176 Identities=18% Similarity=0.305 Sum_probs=134.1
Q ss_pred chHHHHHhhhhhccccchhhhhhhhHHHHHHHHHhhcC-CCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhh
Q psy1420 3 LPMYEVFENVAKSYDTMNDAMSFGIHRLWKDIFIDRLG-PTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQL 81 (241)
Q Consensus 3 ~~~~~~f~~~~~~yd~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (241)
+.+.++|+..+..|+.............+ +.+.+.+. ..++.+|||+|||+|..+ ..++. .
T Consensus 4 ~~~~~~f~~~a~~y~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~vLDiG~G~G~~~-------------~~l~~----~ 65 (234)
T 3dtn_A 4 SEIKRKFDAVSGKYDEQRRKFIPCFDDFY-GVSVSIASVDTENPDILDLGAGTGLLS-------------AFLME----K 65 (234)
T ss_dssp CSSCCCCCHHHHHHHHHHHHHCTTHHHHH-HHHHHTCCCSCSSCEEEEETCTTSHHH-------------HHHHH----H
T ss_pred HHHHHHHHHHHHHHHHhHHHhCcCHHHHH-HHHHHHhhcCCCCCeEEEecCCCCHHH-------------HHHHH----h
Confidence 34567788888888886554444433333 55555555 467789999999999988 44433 1
Q ss_pred hhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCC
Q psy1420 82 IAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEE 161 (241)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 161 (241)
. +..+++++|+++.+++.++++.. .. +++++.++|+..
T Consensus 66 ~-------------~~~~v~~vD~s~~~~~~a~~~~~-------------------------~~----~~~~~~~~d~~~ 103 (234)
T 3dtn_A 66 Y-------------PEATFTLVDMSEKMLEIAKNRFR-------------------------GN----LKVKYIEADYSK 103 (234)
T ss_dssp C-------------TTCEEEEEESCHHHHHHHHHHTC-------------------------SC----TTEEEEESCTTT
T ss_pred C-------------CCCeEEEEECCHHHHHHHHHhhc-------------------------cC----CCEEEEeCchhc
Confidence 0 25689999999999999998876 22 268999999999
Q ss_pred CCCCCCceeEEeeeehhhccccHH--HHHHHHHHhccCCcEEEEEecCH-------------------------------
Q psy1420 162 LPIESDSYSAYTIAFGIRNVTRID--KALSEAYRVLKPGGRFLCLEFSH------------------------------- 208 (241)
Q Consensus 162 ~~~~~~~~D~V~~~~~l~~~~~~~--~~l~~~~~~LkpgG~l~i~~~~~------------------------------- 208 (241)
.+.+ ++||+|++..++++++++. .++++++++|||||++++.+...
T Consensus 104 ~~~~-~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (234)
T 3dtn_A 104 YDFE-EKYDMVVSALSIHHLEDEDKKELYKRSYSILKESGIFINADLVHGETAFIENLNKTIWRQYVENSGLTEEEIAAG 182 (234)
T ss_dssp CCCC-SCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECBCSSHHHHHHHHHHHHHHHHTSSCCHHHHHTT
T ss_pred cCCC-CCceEEEEeCccccCCHHHHHHHHHHHHHhcCCCcEEEEEEecCCCChhhhhHHHHHHHHHHHhcCCCHHHHHHH
Confidence 8876 8999999999999998776 59999999999999999987321
Q ss_pred ------------HHHHHHHHHCCCceEEEEEecCceeEEEeeec
Q psy1420 209 ------------EEFKSMIESAGFQYVTYENLTFGVVAIHSGFK 240 (241)
Q Consensus 209 ------------~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~~ 240 (241)
+++.++++++||+.+++....++. +++.+.|
T Consensus 183 ~~~~~~~~~~~~~~~~~ll~~aGF~~v~~~~~~~~~-~~~~~~~ 225 (234)
T 3dtn_A 183 YERSKLDKDIEMNQQLNWLKEAGFRDVSCIYKYYQF-AVMFGRK 225 (234)
T ss_dssp C----CCCCCBHHHHHHHHHHTTCEEEEEEEEETTE-EEEEEEC
T ss_pred HHhcccccccCHHHHHHHHHHcCCCceeeeeeecce-eEEEEEe
Confidence 567789999999999887665553 3445554
No 2
>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}
Probab=99.83 E-value=2.7e-20 Score=155.41 Aligned_cols=174 Identities=13% Similarity=0.186 Sum_probs=115.5
Q ss_pred CcchHHHHHhhhhhccccchhhhhhhhHH--HHHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhh
Q psy1420 1 MKLPMYEVFENVAKSYDTMNDAMSFGIHR--LWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVM 78 (241)
Q Consensus 1 ~~~~~~~~f~~~~~~yd~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~ 78 (241)
|.....++|+.++..|+............ .....+++.+...++.+|||+|||+|..+ ..++.
T Consensus 1 m~~~~~~~f~~~a~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vLDiGcG~G~~~-------------~~l~~-- 65 (220)
T 3hnr_A 1 MGTEFNGLFDEWAHTYDSFVQGEDIQYKEVFAHYEDILEDVVNKSFGNVLEFGVGTGNLT-------------NKLLL-- 65 (220)
T ss_dssp -----------------------CCTTTTTTTTHHHHHHHHHHTCCSEEEEECCTTSHHH-------------HHHHH--
T ss_pred CchhHHHHHHHHHHHHHHHhhcchHhHHHHHHHHHHHHHHhhccCCCeEEEeCCCCCHHH-------------HHHHh--
Confidence 55677889999999999864222211111 11234445555567889999999999988 44444
Q ss_pred hhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecc
Q psy1420 79 GQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEAN 158 (241)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 158 (241)
....++++|+++.+++.++++.. .++++..+|
T Consensus 66 -----------------~~~~v~~vD~s~~~~~~a~~~~~-------------------------------~~~~~~~~d 97 (220)
T 3hnr_A 66 -----------------AGRTVYGIEPSREMRMIAKEKLP-------------------------------KEFSITEGD 97 (220)
T ss_dssp -----------------TTCEEEEECSCHHHHHHHHHHSC-------------------------------TTCCEESCC
T ss_pred -----------------CCCeEEEEeCCHHHHHHHHHhCC-------------------------------CceEEEeCC
Confidence 35689999999999999987643 368899999
Q ss_pred cCCCCCCCCceeEEeeeehhhccccHHH--HHHHHHHhccCCcEEEEEecC-----------------------------
Q psy1420 159 AEELPIESDSYSAYTIAFGIRNVTRIDK--ALSEAYRVLKPGGRFLCLEFS----------------------------- 207 (241)
Q Consensus 159 ~~~~~~~~~~~D~V~~~~~l~~~~~~~~--~l~~~~~~LkpgG~l~i~~~~----------------------------- 207 (241)
+..++.+ ++||+|++..++++++++.. +++++.++|||||++++.+..
T Consensus 98 ~~~~~~~-~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (220)
T 3hnr_A 98 FLSFEVP-TSIDTIVSTYAFHHLTDDEKNVAIAKYSQLLNKGGKIVFADTIFADQDAYDKTVEAAKQRGFHQLANDLQTE 176 (220)
T ss_dssp SSSCCCC-SCCSEEEEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEEECBSSHHHHHHHHHHHHHTTCHHHHHHHHHS
T ss_pred hhhcCCC-CCeEEEEECcchhcCChHHHHHHHHHHHHhcCCCCEEEEEeccccChHHHHHHHHHHHhCCCccchhhcchh
Confidence 9998877 89999999999999999877 999999999999999998632
Q ss_pred ----HHHHHHHHHHCCCceEEEEEecCceeEEEeeec
Q psy1420 208 ----HEEFKSMIESAGFQYVTYENLTFGVVAIHSGFK 240 (241)
Q Consensus 208 ----~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~~ 240 (241)
.+++.++++++||+++..... +..-+..+.|
T Consensus 177 ~~~~~~~~~~~l~~aGf~v~~~~~~--~~~w~~~~~~ 211 (220)
T 3hnr_A 177 YYTRIPVMQTIFENNGFHVTFTRLN--HFVWVMEATK 211 (220)
T ss_dssp CCCBHHHHHHHHHHTTEEEEEEECS--SSEEEEEEEE
T ss_pred hcCCHHHHHHHHHHCCCEEEEeecc--ceEEEEeehh
Confidence 178899999999987766643 4555555554
No 3
>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*
Probab=99.82 E-value=2.1e-19 Score=156.47 Aligned_cols=144 Identities=17% Similarity=0.211 Sum_probs=110.4
Q ss_pred CCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcC
Q psy1420 41 PTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEEL 120 (241)
Q Consensus 41 ~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~ 120 (241)
.+++.+|||+|||+|..+ ..++. .+. ..+.+++|+|+|+.|++.|++++.
T Consensus 68 ~~~~~~vLDlGcGtG~~~-------------~~la~----~~~-----------~~~~~v~gvD~s~~ml~~A~~~~~-- 117 (261)
T 4gek_A 68 VQPGTQVYDLGCSLGAAT-------------LSVRR----NIH-----------HDNCKIIAIDNSPAMIERCRRHID-- 117 (261)
T ss_dssp CCTTCEEEEETCTTTHHH-------------HHHHH----TCC-----------SSSCEEEEEESCHHHHHHHHHHHH--
T ss_pred CCCCCEEEEEeCCCCHHH-------------HHHHH----hcC-----------CCCCEEEEEECCHHHHHHHHHHHH--
Confidence 367889999999999988 43333 110 135689999999999999999987
Q ss_pred CCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccH--HHHHHHHHHhccCC
Q psy1420 121 PIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRI--DKALSEAYRVLKPG 198 (241)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~--~~~l~~~~~~Lkpg 198 (241)
..+.. .+++++++|+.++|. +++|+|+++++++++++. ..+|++++++||||
T Consensus 118 -----------------------~~~~~-~~v~~~~~D~~~~~~--~~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpG 171 (261)
T 4gek_A 118 -----------------------AYKAP-TPVDVIEGDIRDIAI--ENASMVVLNFTLQFLEPSERQALLDKIYQGLNPG 171 (261)
T ss_dssp -----------------------TSCCS-SCEEEEESCTTTCCC--CSEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEE
T ss_pred -----------------------hhccC-ceEEEeecccccccc--cccccceeeeeeeecCchhHhHHHHHHHHHcCCC
Confidence 44443 479999999999876 459999999999998755 47899999999999
Q ss_pred cEEEEEecCH--------------------------------------------HHHHHHHHHCCCceEEEEEecCceeE
Q psy1420 199 GRFLCLEFSH--------------------------------------------EEFKSMIESAGFQYVTYENLTFGVVA 234 (241)
Q Consensus 199 G~l~i~~~~~--------------------------------------------~~~~~~l~~~Gf~~~~~~~~~~~~~~ 234 (241)
|+|++.+... +++.++|+++||+.+++---.+.. +
T Consensus 172 G~lii~e~~~~~~~~~~~~~~~~~~~~~~~~g~s~~ei~~~~~~l~~~~~~~s~~~~~~~L~~AGF~~ve~~fq~~nF-~ 250 (261)
T 4gek_A 172 GALVLSEKFSFEDAKVGELLFNMHHDFKRANGYSELEISQKRSMLENVMLTDSVETHKARLHKAGFEHSELWFQCFNF-G 250 (261)
T ss_dssp EEEEEEEEBCCSSHHHHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHCCCBCHHHHHHHHHHHTCSEEEEEEEETTE-E
T ss_pred cEEEEEeccCCCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhhcccccCCCHHHHHHHHHHcCCCeEEEEEEeccE-E
Confidence 9999976321 567789999999987753222333 2
Q ss_pred EEeeecC
Q psy1420 235 IHSGFKL 241 (241)
Q Consensus 235 ~~~~~~~ 241 (241)
.++|+||
T Consensus 251 ~~iA~K~ 257 (261)
T 4gek_A 251 SLVALKA 257 (261)
T ss_dssp EEEEECC
T ss_pred EEEEEEc
Confidence 3567775
No 4
>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}
Probab=99.82 E-value=9.5e-20 Score=150.91 Aligned_cols=147 Identities=17% Similarity=0.240 Sum_probs=120.7
Q ss_pred HHHHHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCCh
Q psy1420 28 HRLWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPN 107 (241)
Q Consensus 28 ~~~~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~ 107 (241)
...+.+.+.+.+..+++ +|||+|||+|..+ ..++. ....+++++|+++
T Consensus 29 ~~~~~~~~~~~~~~~~~-~vLdiG~G~G~~~-------------~~l~~------------------~~~~~v~~~D~s~ 76 (219)
T 3dlc_A 29 YPIIAENIINRFGITAG-TCIDIGSGPGALS-------------IALAK------------------QSDFSIRALDFSK 76 (219)
T ss_dssp HHHHHHHHHHHHCCCEE-EEEEETCTTSHHH-------------HHHHH------------------HSEEEEEEEESCH
T ss_pred cHHHHHHHHHhcCCCCC-EEEEECCCCCHHH-------------HHHHH------------------cCCCeEEEEECCH
Confidence 34455666777776666 9999999999988 43333 1245799999999
Q ss_pred HhHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHH
Q psy1420 108 PRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKA 187 (241)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~ 187 (241)
.+++.+++++. ..++. +++++.++|+..++.++++||+|++..++++++++..+
T Consensus 77 ~~~~~a~~~~~-------------------------~~~~~-~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~ 130 (219)
T 3dlc_A 77 HMNEIALKNIA-------------------------DANLN-DRIQIVQGDVHNIPIEDNYADLIVSRGSVFFWEDVATA 130 (219)
T ss_dssp HHHHHHHHHHH-------------------------HTTCT-TTEEEEECBTTBCSSCTTCEEEEEEESCGGGCSCHHHH
T ss_pred HHHHHHHHHHH-------------------------hcccc-CceEEEEcCHHHCCCCcccccEEEECchHhhccCHHHH
Confidence 99999999987 55544 57999999999998888899999999999999999999
Q ss_pred HHHHHHhccCCcEEEEEecCH--------------------------------HHHHHHHHHCCCceEEEEEecCce
Q psy1420 188 LSEAYRVLKPGGRFLCLEFSH--------------------------------EEFKSMIESAGFQYVTYENLTFGV 232 (241)
Q Consensus 188 l~~~~~~LkpgG~l~i~~~~~--------------------------------~~~~~~l~~~Gf~~~~~~~~~~~~ 232 (241)
++++.++|||||++++.+... +++.++++++||+.+++.....|.
T Consensus 131 l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~~~~ 207 (219)
T 3dlc_A 131 FREIYRILKSGGKTYIGGGFGNKELRDSISAEMIRKNPDWKEFNRKNISQENVERFQNVLDEIGISSYEIILGDEGF 207 (219)
T ss_dssp HHHHHHHEEEEEEEEEEECCSSHHHHHHHHHHHHHHCTTHHHHHHHHSSHHHHHHHHHHHHHHTCSSEEEEEETTEE
T ss_pred HHHHHHhCCCCCEEEEEeccCcHHHHHHHHHHHHHhHHHHHhhhhhccccCCHHHHHHHHHHcCCCeEEEEecCCce
Confidence 999999999999999875221 788999999999998888665443
No 5
>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=99.81 E-value=1.5e-19 Score=149.34 Aligned_cols=170 Identities=13% Similarity=0.131 Sum_probs=129.6
Q ss_pred cchHHHHHhhhhhccccchhh-hhhhhHHHHHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhh
Q psy1420 2 KLPMYEVFENVAKSYDTMNDA-MSFGIHRLWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQ 80 (241)
Q Consensus 2 ~~~~~~~f~~~~~~yd~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (241)
++.+.+.|+..+..|+..... ... ...+...+...+. ..+.+|||+|||+|.++ ..++.
T Consensus 2 ~~~~~~~y~~~a~~y~~~~~~~~~~--~~~~~~~l~~~~~-~~~~~vLDiGcG~G~~~-------------~~l~~---- 61 (203)
T 3h2b_A 2 TDDVSKAYSSPTFDAEALLGTVISA--EDPDRVLIEPWAT-GVDGVILDVGSGTGRWT-------------GHLAS---- 61 (203)
T ss_dssp CCHHHHHHHCTTTCHHHHTCSSCCT--TCTTHHHHHHHHH-HCCSCEEEETCTTCHHH-------------HHHHH----
T ss_pred HHHHHHHHhhHHHHHHHHhhhhccc--cHHHHHHHHHHhc-cCCCeEEEecCCCCHHH-------------HHHHh----
Confidence 356789999999999664211 111 1112222222222 12679999999999988 44444
Q ss_pred hhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccC
Q psy1420 81 LIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAE 160 (241)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 160 (241)
....++++|+++.+++.++++.. +++++++|+.
T Consensus 62 ---------------~~~~v~gvD~s~~~~~~a~~~~~--------------------------------~~~~~~~d~~ 94 (203)
T 3h2b_A 62 ---------------LGHQIEGLEPATRLVELARQTHP--------------------------------SVTFHHGTIT 94 (203)
T ss_dssp ---------------TTCCEEEECCCHHHHHHHHHHCT--------------------------------TSEEECCCGG
T ss_pred ---------------cCCeEEEEeCCHHHHHHHHHhCC--------------------------------CCeEEeCccc
Confidence 24589999999999999987643 5789999999
Q ss_pred CCCCCCCceeEEeeeehhhccc--cHHHHHHHHHHhccCCcEEEEEec------------------CHHHHHHHHHHCCC
Q psy1420 161 ELPIESDSYSAYTIAFGIRNVT--RIDKALSEAYRVLKPGGRFLCLEF------------------SHEEFKSMIESAGF 220 (241)
Q Consensus 161 ~~~~~~~~~D~V~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~i~~~------------------~~~~~~~~l~~~Gf 220 (241)
.++.+.++||+|++..++++++ ++..+++++.++|||||++++..+ +.+++.++++++||
T Consensus 95 ~~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf 174 (203)
T 3h2b_A 95 DLSDSPKRWAGLLAWYSLIHMGPGELPDALVALRMAVEDGGGLLMSFFSGPSLEPMYHPVATAYRWPLPELAQALETAGF 174 (203)
T ss_dssp GGGGSCCCEEEEEEESSSTTCCTTTHHHHHHHHHHTEEEEEEEEEEEECCSSCEEECCSSSCEEECCHHHHHHHHHHTTE
T ss_pred ccccCCCCeEEEEehhhHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEccCCchhhhhchhhhhccCCHHHHHHHHHHCCC
Confidence 9888788999999999999987 889999999999999999998763 34999999999999
Q ss_pred ceEEEEEecCceeEEEee
Q psy1420 221 QYVTYENLTFGVVAIHSG 238 (241)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~ 238 (241)
++++.........+.+..
T Consensus 175 ~~~~~~~~~~~p~~~l~~ 192 (203)
T 3h2b_A 175 QVTSSHWDPRFPHAYLTA 192 (203)
T ss_dssp EEEEEEECTTSSEEEEEE
T ss_pred cEEEEEecCCCcchhhhh
Confidence 999999886644444443
No 6
>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}
Probab=99.80 E-value=1.9e-18 Score=144.00 Aligned_cols=152 Identities=16% Similarity=0.213 Sum_probs=124.5
Q ss_pred HHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHH
Q psy1420 32 KDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLR 111 (241)
Q Consensus 32 ~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~ 111 (241)
.+.+++.+...++.+|||+|||+|..+ ..++...+ ....++++|+++.+++
T Consensus 26 ~~~~~~~~~~~~~~~vLDiG~G~G~~~-------------~~l~~~~~----------------~~~~v~~vD~s~~~~~ 76 (219)
T 3dh0_A 26 PEKVLKEFGLKEGMTVLDVGTGAGFYL-------------PYLSKMVG----------------EKGKVYAIDVQEEMVN 76 (219)
T ss_dssp HHHHHHHHTCCTTCEEEESSCTTCTTH-------------HHHHHHHT----------------TTCEEEEEESCHHHHH
T ss_pred HHHHHHHhCCCCCCEEEEEecCCCHHH-------------HHHHHHhC----------------CCcEEEEEECCHHHHH
Confidence 355666777788889999999999998 44433110 2468999999999999
Q ss_pred HHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHHHH
Q psy1420 112 FLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEA 191 (241)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~~ 191 (241)
.++++.. ..+++ ++++..+|+...+.+.++||+|++..++++++++..+++++
T Consensus 77 ~a~~~~~-------------------------~~~~~--~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~ 129 (219)
T 3dh0_A 77 YAWEKVN-------------------------KLGLK--NVEVLKSEENKIPLPDNTVDFIFMAFTFHELSEPLKFLEEL 129 (219)
T ss_dssp HHHHHHH-------------------------HHTCT--TEEEEECBTTBCSSCSSCEEEEEEESCGGGCSSHHHHHHHH
T ss_pred HHHHHHH-------------------------HcCCC--cEEEEecccccCCCCCCCeeEEEeehhhhhcCCHHHHHHHH
Confidence 9999887 44544 68999999999888888999999999999999999999999
Q ss_pred HHhccCCcEEEEEecC---------------HHHHHHHHHHCCCceEEEEEecCceeEEEeeec
Q psy1420 192 YRVLKPGGRFLCLEFS---------------HEEFKSMIESAGFQYVTYENLTFGVVAIHSGFK 240 (241)
Q Consensus 192 ~~~LkpgG~l~i~~~~---------------~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~~ 240 (241)
.++|||||++++.++. .+++.++++++||++++........ ..++++|
T Consensus 130 ~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~-~~~~~~k 192 (219)
T 3dh0_A 130 KRVAKPFAYLAIIDWKKEERDKGPPPEEVYSEWEVGLILEDAGIRVGRVVEVGKYC-FGVYAMI 192 (219)
T ss_dssp HHHEEEEEEEEEEEECSSCCSSSCCGGGSCCHHHHHHHHHHTTCEEEEEEEETTTE-EEEEEEC
T ss_pred HHHhCCCeEEEEEEecccccccCCchhcccCHHHHHHHHHHCCCEEEEEEeeCCce-EEEEEEe
Confidence 9999999999998744 3899999999999999988775443 3344444
No 7
>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}
Probab=99.79 E-value=2e-18 Score=148.76 Aligned_cols=143 Identities=24% Similarity=0.346 Sum_probs=120.3
Q ss_pred HHHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHh
Q psy1420 30 LWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPR 109 (241)
Q Consensus 30 ~~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~ 109 (241)
...+.+++.+...++.+|||+|||+|..+ ..++. ....+++++|+|+.+
T Consensus 48 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~-------------~~l~~------------------~~~~~v~gvD~s~~~ 96 (273)
T 3bus_A 48 RLTDEMIALLDVRSGDRVLDVGCGIGKPA-------------VRLAT------------------ARDVRVTGISISRPQ 96 (273)
T ss_dssp HHHHHHHHHSCCCTTCEEEEESCTTSHHH-------------HHHHH------------------HSCCEEEEEESCHHH
T ss_pred HHHHHHHHhcCCCCCCEEEEeCCCCCHHH-------------HHHHH------------------hcCCEEEEEeCCHHH
Confidence 34566777778788999999999999988 43333 124689999999999
Q ss_pred HHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHH
Q psy1420 110 LRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALS 189 (241)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~ 189 (241)
++.+++++. ..++. +++++..+|+..+|.++++||+|++..++++++++..+++
T Consensus 97 ~~~a~~~~~-------------------------~~~~~-~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~ 150 (273)
T 3bus_A 97 VNQANARAT-------------------------AAGLA-NRVTFSYADAMDLPFEDASFDAVWALESLHHMPDRGRALR 150 (273)
T ss_dssp HHHHHHHHH-------------------------HTTCT-TTEEEEECCTTSCCSCTTCEEEEEEESCTTTSSCHHHHHH
T ss_pred HHHHHHHHH-------------------------hcCCC-cceEEEECccccCCCCCCCccEEEEechhhhCCCHHHHHH
Confidence 999998887 44554 4799999999999888889999999999999999999999
Q ss_pred HHHHhccCCcEEEEEecC---------------------------HHHHHHHHHHCCCceEEEEEec
Q psy1420 190 EAYRVLKPGGRFLCLEFS---------------------------HEEFKSMIESAGFQYVTYENLT 229 (241)
Q Consensus 190 ~~~~~LkpgG~l~i~~~~---------------------------~~~~~~~l~~~Gf~~~~~~~~~ 229 (241)
++.++|||||++++.++. .+++.++++++||++++.....
T Consensus 151 ~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~ 217 (273)
T 3bus_A 151 EMARVLRPGGTVAIADFVLLAPVEGAKKEAVDAFRAGGGVLSLGGIDEYESDVRQAELVVTSTVDIS 217 (273)
T ss_dssp HHHTTEEEEEEEEEEEEEESSCCCHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHHTTCEEEEEEECH
T ss_pred HHHHHcCCCeEEEEEEeeccCCCChhHHHHHHHHHhhcCccCCCCHHHHHHHHHHcCCeEEEEEECc
Confidence 999999999999987632 1788999999999999888764
No 8
>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}
Probab=99.78 E-value=1.4e-18 Score=146.83 Aligned_cols=162 Identities=19% Similarity=0.270 Sum_probs=114.7
Q ss_pred hHHHHHhhhhhccccchhhh-hhhhHHHHHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhh
Q psy1420 4 PMYEVFENVAKSYDTMNDAM-SFGIHRLWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLI 82 (241)
Q Consensus 4 ~~~~~f~~~~~~yd~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (241)
...+.|+..+..|+...... .......+.+.+...+. ++.+|||+|||+|..+ ..++.
T Consensus 15 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~vLDiG~G~G~~~-------------~~l~~------ 73 (242)
T 3l8d_A 15 SAEKKWDSSAEFWNQNSQEMWDSGSRSTIIPFFEQYVK--KEAEVLDVGCGDGYGT-------------YKLSR------ 73 (242)
T ss_dssp -----------------CHHHHTSTTTTHHHHHHHHSC--TTCEEEEETCTTSHHH-------------HHHHH------
T ss_pred HHHHHHHhHHHHhhhhhhhccCcccHHHHHHHHHHHcC--CCCeEEEEcCCCCHHH-------------HHHHH------
Confidence 45677888888877643221 12222334455555443 6779999999999988 44444
Q ss_pred hcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCC
Q psy1420 83 AGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL 162 (241)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 162 (241)
....++++|+++.+++.++++.. ..+++++.+|+..+
T Consensus 74 -------------~~~~v~~vD~s~~~~~~a~~~~~------------------------------~~~~~~~~~d~~~~ 110 (242)
T 3l8d_A 74 -------------TGYKAVGVDISEVMIQKGKERGE------------------------------GPDLSFIKGDLSSL 110 (242)
T ss_dssp -------------TTCEEEEEESCHHHHHHHHTTTC------------------------------BTTEEEEECBTTBC
T ss_pred -------------cCCeEEEEECCHHHHHHHHhhcc------------------------------cCCceEEEcchhcC
Confidence 34579999999999999886643 13689999999999
Q ss_pred CCCCCceeEEeeeehhhccccHHHHHHHHHHhccCCcEEEEEecC------------------------HHHHHHHHHHC
Q psy1420 163 PIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFS------------------------HEEFKSMIESA 218 (241)
Q Consensus 163 ~~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~------------------------~~~~~~~l~~~ 218 (241)
+.+.++||+|++..++++++++..++++++++|+|||++++.+.. ..++.++++++
T Consensus 111 ~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 190 (242)
T 3l8d_A 111 PFENEQFEAIMAINSLEWTEEPLRALNEIKRVLKSDGYACIAILGPTAKPRENSYPRLYGKDVVCNTMMPWEFEQLVKEQ 190 (242)
T ss_dssp SSCTTCEEEEEEESCTTSSSCHHHHHHHHHHHEEEEEEEEEEEECTTCGGGGGGGGGGGTCCCSSCCCCHHHHHHHHHHT
T ss_pred CCCCCCccEEEEcChHhhccCHHHHHHHHHHHhCCCeEEEEEEcCCcchhhhhhhhhhccccccccCCCHHHHHHHHHHc
Confidence 888889999999999999999999999999999999999998732 27899999999
Q ss_pred CCceEEEEEec
Q psy1420 219 GFQYVTYENLT 229 (241)
Q Consensus 219 Gf~~~~~~~~~ 229 (241)
||++++.....
T Consensus 191 Gf~~~~~~~~~ 201 (242)
T 3l8d_A 191 GFKVVDGIGVY 201 (242)
T ss_dssp TEEEEEEEEEE
T ss_pred CCEEEEeeccc
Confidence 99999887653
No 9
>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41
Probab=99.78 E-value=1.6e-18 Score=148.68 Aligned_cols=139 Identities=23% Similarity=0.367 Sum_probs=116.0
Q ss_pred HHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHH
Q psy1420 32 KDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLR 111 (241)
Q Consensus 32 ~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~ 111 (241)
.+.+++.+...++.+|||+|||+|.++ ..+.. ...+++++|+|+.+++
T Consensus 26 ~~~l~~~l~~~~~~~vLDiGcG~G~~~-------------~~l~~-------------------~~~~v~gvD~s~~~l~ 73 (260)
T 1vl5_A 26 LAKLMQIAALKGNEEVLDVATGGGHVA-------------NAFAP-------------------FVKKVVAFDLTEDILK 73 (260)
T ss_dssp HHHHHHHHTCCSCCEEEEETCTTCHHH-------------HHHGG-------------------GSSEEEEEESCHHHHH
T ss_pred HHHHHHHhCCCCCCEEEEEeCCCCHHH-------------HHHHH-------------------hCCEEEEEeCCHHHHH
Confidence 355666667778889999999999988 44444 2358999999999999
Q ss_pred HHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHHHH
Q psy1420 112 FLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEA 191 (241)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~~ 191 (241)
.+++++. ..+.+ ++.+..+|+..+|+++++||+|++..++++++++..+++++
T Consensus 74 ~a~~~~~-------------------------~~~~~--~v~~~~~d~~~l~~~~~~fD~V~~~~~l~~~~d~~~~l~~~ 126 (260)
T 1vl5_A 74 VARAFIE-------------------------GNGHQ--QVEYVQGDAEQMPFTDERFHIVTCRIAAHHFPNPASFVSEA 126 (260)
T ss_dssp HHHHHHH-------------------------HTTCC--SEEEEECCC-CCCSCTTCEEEEEEESCGGGCSCHHHHHHHH
T ss_pred HHHHHHH-------------------------hcCCC--ceEEEEecHHhCCCCCCCEEEEEEhhhhHhcCCHHHHHHHH
Confidence 9998876 44443 68999999999988888999999999999999999999999
Q ss_pred HHhccCCcEEEEEecC---------------------------HHHHHHHHHHCCCceEEEEEec
Q psy1420 192 YRVLKPGGRFLCLEFS---------------------------HEEFKSMIESAGFQYVTYENLT 229 (241)
Q Consensus 192 ~~~LkpgG~l~i~~~~---------------------------~~~~~~~l~~~Gf~~~~~~~~~ 229 (241)
.++|||||++++.+.. .+++.++++++||.++......
T Consensus 127 ~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~ 191 (260)
T 1vl5_A 127 YRVLKKGGQLLLVDNSAPENDAFDVFYNYVEKERDYSHHRAWKKSDWLKMLEEAGFELEELHCFH 191 (260)
T ss_dssp HHHEEEEEEEEEEEEEBCSSHHHHHHHHHHHHHHCTTCCCCCBHHHHHHHHHHHTCEEEEEEEEE
T ss_pred HHHcCCCCEEEEEEcCCCCCHHHHHHHHHHHHhcCccccCCCCHHHHHHHHHHCCCeEEEEEEee
Confidence 9999999999986421 1788999999999998887664
No 10
>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}
Probab=99.78 E-value=2.5e-18 Score=149.58 Aligned_cols=165 Identities=16% Similarity=0.249 Sum_probs=122.0
Q ss_pred HHHHHhhhhhccccchhhhh-hhhH-HH---HHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhh
Q psy1420 5 MYEVFENVAKSYDTMNDAMS-FGIH-RL---WKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMG 79 (241)
Q Consensus 5 ~~~~f~~~~~~yd~~~~~~~-~~~~-~~---~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~ 79 (241)
..+.|+.++..|+....... .... .. ....++..+... +.+|||+|||+|.++ ..++.
T Consensus 26 ~~~~fd~~a~~y~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~vLDiGcG~G~~~-------------~~l~~--- 88 (285)
T 4htf_A 26 QDRNFDDIAEKFSRNIYGTTKGQLRQAILWQDLDRVLAEMGPQ-KLRVLDAGGGEGQTA-------------IKMAE--- 88 (285)
T ss_dssp ------CHHHHHHSCTTSCHHHHHHHHHHHHHHHHHHHHTCSS-CCEEEEETCTTCHHH-------------HHHHH---
T ss_pred cccchhhHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhcCCC-CCEEEEeCCcchHHH-------------HHHHH---
Confidence 34578888888875311111 1111 11 123344444443 679999999999988 44444
Q ss_pred hhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEeccc
Q psy1420 80 QLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANA 159 (241)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 159 (241)
....++++|+++.+++.+++++. ..++. ++++++.+|+
T Consensus 89 ----------------~~~~v~gvD~s~~~~~~a~~~~~-------------------------~~~~~-~~v~~~~~d~ 126 (285)
T 4htf_A 89 ----------------RGHQVILCDLSAQMIDRAKQAAE-------------------------AKGVS-DNMQFIHCAA 126 (285)
T ss_dssp ----------------TTCEEEEEESCHHHHHHHHHHHH-------------------------C-CCG-GGEEEEESCG
T ss_pred ----------------CCCEEEEEECCHHHHHHHHHHHH-------------------------hcCCC-cceEEEEcCH
Confidence 34689999999999999999987 55553 4789999999
Q ss_pred CCCC-CCCCceeEEeeeehhhccccHHHHHHHHHHhccCCcEEEEEecCH------------------------------
Q psy1420 160 EELP-IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH------------------------------ 208 (241)
Q Consensus 160 ~~~~-~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~------------------------------ 208 (241)
..++ ..+++||+|++..++++++++..+++++.++|||||++++.....
T Consensus 127 ~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (285)
T 4htf_A 127 QDVASHLETPVDLILFHAVLEWVADPRSVLQTLWSVLRPGGVLSLMFYNAHGLLMHNMVAGNFDYVQAGMPKKKKRTLSP 206 (285)
T ss_dssp GGTGGGCSSCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEEBHHHHHHHHHHTTCHHHHHTTCCCC----CCC
T ss_pred HHhhhhcCCCceEEEECchhhcccCHHHHHHHHHHHcCCCeEEEEEEeCCchHHHHHHHhcCHHHHhhhccccccccCCC
Confidence 9887 667899999999999999999999999999999999999876422
Q ss_pred ------HHHHHHHHHCCCceEEEEEe
Q psy1420 209 ------EEFKSMIESAGFQYVTYENL 228 (241)
Q Consensus 209 ------~~~~~~l~~~Gf~~~~~~~~ 228 (241)
+++.++++++||++++...+
T Consensus 207 ~~~~~~~~l~~~l~~aGf~v~~~~~~ 232 (285)
T 4htf_A 207 DYPRDPTQVYLWLEEAGWQIMGKTGV 232 (285)
T ss_dssp SCCBCHHHHHHHHHHTTCEEEEEEEE
T ss_pred CCCCCHHHHHHHHHHCCCceeeeeeE
Confidence 78999999999999988866
No 11
>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}
Probab=99.78 E-value=2.7e-18 Score=146.52 Aligned_cols=137 Identities=16% Similarity=0.197 Sum_probs=114.6
Q ss_pred HHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHH
Q psy1420 32 KDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLR 111 (241)
Q Consensus 32 ~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~ 111 (241)
...+.+.+...++.+|||+|||+|..+ ..++. .....++++|+++.+++
T Consensus 33 ~~~l~~~~~~~~~~~vLD~GcG~G~~~-------------~~l~~------------------~~~~~v~~vD~s~~~~~ 81 (253)
T 3g5l_A 33 WHELKKMLPDFNQKTVLDLGCGFGWHC-------------IYAAE------------------HGAKKVLGIDLSERMLT 81 (253)
T ss_dssp HHHHHTTCCCCTTCEEEEETCTTCHHH-------------HHHHH------------------TTCSEEEEEESCHHHHH
T ss_pred HHHHHHhhhccCCCEEEEECCCCCHHH-------------HHHHH------------------cCCCEEEEEECCHHHHH
Confidence 445667777778889999999999988 44433 11237999999999999
Q ss_pred HHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHHHH
Q psy1420 112 FLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEA 191 (241)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~~ 191 (241)
.++++.. ..++++..+|+..++.+.++||+|++..++++++++..+++++
T Consensus 82 ~a~~~~~------------------------------~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~ 131 (253)
T 3g5l_A 82 EAKRKTT------------------------------SPVVCYEQKAIEDIAIEPDAYNVVLSSLALHYIASFDDICKKV 131 (253)
T ss_dssp HHHHHCC------------------------------CTTEEEEECCGGGCCCCTTCEEEEEEESCGGGCSCHHHHHHHH
T ss_pred HHHHhhc------------------------------cCCeEEEEcchhhCCCCCCCeEEEEEchhhhhhhhHHHHHHHH
Confidence 9987753 1468999999999888788999999999999999999999999
Q ss_pred HHhccCCcEEEEEec------------------------------------------------CHHHHHHHHHHCCCceE
Q psy1420 192 YRVLKPGGRFLCLEF------------------------------------------------SHEEFKSMIESAGFQYV 223 (241)
Q Consensus 192 ~~~LkpgG~l~i~~~------------------------------------------------~~~~~~~~l~~~Gf~~~ 223 (241)
+++|||||++++... +.+++.++++++||+++
T Consensus 132 ~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~l~~aGF~~~ 211 (253)
T 3g5l_A 132 YINLKSSGSFIFSVEHPVFTADGRQDWYTDETGNKLHWPVDRYFNESMRTSHFLGEDVQKYHRTVTTYIQTLLKNGFQIN 211 (253)
T ss_dssp HHHEEEEEEEEEEEECHHHHSSSSCSCEECSSCCEEEEEECCTTCCCEEEEEETTEEEEEECCCHHHHHHHHHHTTEEEE
T ss_pred HHHcCCCcEEEEEeCCCccccCccccceeccCCceEEEEeccccccceEEEeeccccCccEecCHHHHHHHHHHcCCeee
Confidence 999999999998632 45889999999999999
Q ss_pred EEEEec
Q psy1420 224 TYENLT 229 (241)
Q Consensus 224 ~~~~~~ 229 (241)
++....
T Consensus 212 ~~~e~~ 217 (253)
T 3g5l_A 212 SVIEPE 217 (253)
T ss_dssp EEECCC
T ss_pred eeecCC
Confidence 888653
No 12
>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*
Probab=99.78 E-value=3.7e-18 Score=141.63 Aligned_cols=164 Identities=13% Similarity=0.125 Sum_probs=123.9
Q ss_pred chHHHHHhhhhhccccchhhhhhhhHHHHHHHHHhhcC-CCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhh
Q psy1420 3 LPMYEVFENVAKSYDTMNDAMSFGIHRLWKDIFIDRLG-PTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQL 81 (241)
Q Consensus 3 ~~~~~~f~~~~~~yd~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (241)
+...++|+..+..|+.. ...... .....+.+.+. ..++.+|||+|||+|..+ ..++.
T Consensus 9 ~~~~~~~~~~a~~y~~~---~~~~~~-~~~~~~~~~l~~~~~~~~vLdiG~G~G~~~-------------~~l~~----- 66 (218)
T 3ou2_A 9 ESQLSYYRARASEYDAT---FVPYMD-SAAPAALERLRAGNIRGDVLELASGTGYWT-------------RHLSG----- 66 (218)
T ss_dssp HHHHHHHHHHGGGHHHH---HHHHHT-TTHHHHHHHHTTTTSCSEEEEESCTTSHHH-------------HHHHH-----
T ss_pred HHHHHHHHHHHHHHHHh---hhhHHH-HHHHHHHHHHhcCCCCCeEEEECCCCCHHH-------------HHHHh-----
Confidence 45677888888888772 111111 12333444443 467779999999999988 44444
Q ss_pred hhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCC
Q psy1420 82 IAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEE 161 (241)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 161 (241)
...+++++|+++.+++.+++ . +. .++++.++|+..
T Consensus 67 --------------~~~~v~~~D~s~~~~~~a~~--~---------------------------~~--~~~~~~~~d~~~ 101 (218)
T 3ou2_A 67 --------------LADRVTALDGSAEMIAEAGR--H---------------------------GL--DNVEFRQQDLFD 101 (218)
T ss_dssp --------------HSSEEEEEESCHHHHHHHGG--G---------------------------CC--TTEEEEECCTTS
T ss_pred --------------cCCeEEEEeCCHHHHHHHHh--c---------------------------CC--CCeEEEeccccc
Confidence 24589999999999999876 2 11 368999999988
Q ss_pred CCCCCCceeEEeeeehhhccccH--HHHHHHHHHhccCCcEEEEEec---------------------------------
Q psy1420 162 LPIESDSYSAYTIAFGIRNVTRI--DKALSEAYRVLKPGGRFLCLEF--------------------------------- 206 (241)
Q Consensus 162 ~~~~~~~~D~V~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~i~~~--------------------------------- 206 (241)
. .+.++||+|+++.++++++++ ..+++++.++|||||.+++.+.
T Consensus 102 ~-~~~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (218)
T 3ou2_A 102 W-TPDRQWDAVFFAHWLAHVPDDRFEAFWESVRSAVAPGGVVEFVDVTDHERRLEQQDDSEPEVAVRRTLQDGRSFRIVK 180 (218)
T ss_dssp C-CCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECCCC------------CEEEEECTTSCEEEEEC
T ss_pred C-CCCCceeEEEEechhhcCCHHHHHHHHHHHHHHcCCCeEEEEEeCCCCccccchhhhcccccceeeecCCcchhhHhh
Confidence 7 567899999999999999886 8999999999999999998754
Q ss_pred ---CHHHHHHHHHHCCCceEEEEEecCceeE
Q psy1420 207 ---SHEEFKSMIESAGFQYVTYENLTFGVVA 234 (241)
Q Consensus 207 ---~~~~~~~~l~~~Gf~~~~~~~~~~~~~~ 234 (241)
+.+++.++++++||++...+...+....
T Consensus 181 ~~~~~~~~~~~l~~aGf~v~~~~~~~~~~~~ 211 (218)
T 3ou2_A 181 VFRSPAELTERLTALGWSCSVDEVHPGFLYA 211 (218)
T ss_dssp CCCCHHHHHHHHHHTTEEEEEEEEETTEEEE
T ss_pred cCCCHHHHHHHHHHCCCEEEeeeccccceEe
Confidence 3378999999999997766665544443
No 13
>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43
Probab=99.78 E-value=4.2e-18 Score=143.54 Aligned_cols=171 Identities=17% Similarity=0.200 Sum_probs=127.3
Q ss_pred HHhhhhhccccchhhhhhhhHHHHHHHHHhhcCC--CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcC
Q psy1420 8 VFENVAKSYDTMNDAMSFGIHRLWKDIFIDRLGP--THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQ 85 (241)
Q Consensus 8 ~f~~~~~~yd~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (241)
.|+.++..|+..... ......+.+.+.+.+.. .++.+|||+|||+|..+ ..++.
T Consensus 2 ~y~~~a~~yd~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~-------------~~l~~--------- 57 (246)
T 1y8c_A 2 CYNKFAHIYDKLIRA--DVDYKKWSDFIIEKCVENNLVFDDYLDLACGTGNLT-------------ENLCP--------- 57 (246)
T ss_dssp CHHHHHHHHHHHTTC--SCCHHHHHHHHHHHHHTTTCCTTEEEEETCTTSTTH-------------HHHGG---------
T ss_pred hHHHHHHHHHHHccc--cccHHHHHHHHHHHHHHhCCCCCeEEEeCCCCCHHH-------------HHHHH---------
Confidence 467777778765331 11122334444444433 36779999999999998 44444
Q ss_pred CCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCC
Q psy1420 86 WKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIE 165 (241)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 165 (241)
...+++++|+++.+++.++++.. ..+. ++++.++|+...+.+
T Consensus 58 ----------~~~~~~~~D~s~~~~~~a~~~~~-------------------------~~~~---~~~~~~~d~~~~~~~ 99 (246)
T 1y8c_A 58 ----------KFKNTWAVDLSQEMLSEAENKFR-------------------------SQGL---KPRLACQDISNLNIN 99 (246)
T ss_dssp ----------GSSEEEEECSCHHHHHHHHHHHH-------------------------HTTC---CCEEECCCGGGCCCS
T ss_pred ----------CCCcEEEEECCHHHHHHHHHHHh-------------------------hcCC---CeEEEecccccCCcc
Confidence 34579999999999999998876 3332 478899999888766
Q ss_pred CCceeEEeeee-hhhcc---ccHHHHHHHHHHhccCCcEEEEEe------------------------------------
Q psy1420 166 SDSYSAYTIAF-GIRNV---TRIDKALSEAYRVLKPGGRFLCLE------------------------------------ 205 (241)
Q Consensus 166 ~~~~D~V~~~~-~l~~~---~~~~~~l~~~~~~LkpgG~l~i~~------------------------------------ 205 (241)
++||+|++.. +++++ +++..+++++.++|||||++++..
T Consensus 100 -~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (246)
T 1y8c_A 100 -RKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDINSYYKLSQVLGNNDFNYDDDEVFYYWENQFEDDLVS 178 (246)
T ss_dssp -CCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEEEECHHHHHTTTTTCCEEEEETTEEEEEEEEEETTEEE
T ss_pred -CCceEEEEcCccccccCCHHHHHHHHHHHHHhcCCCcEEEEEecCHHHHHhhcCcceEEecCCcEEEEEecccCCceEE
Confidence 7899999998 99998 678899999999999999998721
Q ss_pred ------------------------cCHHHHHHHHHHCCCceEEEEEec-------CceeEEEeeecC
Q psy1420 206 ------------------------FSHEEFKSMIESAGFQYVTYENLT-------FGVVAIHSGFKL 241 (241)
Q Consensus 206 ------------------------~~~~~~~~~l~~~Gf~~~~~~~~~-------~~~~~~~~~~~~ 241 (241)
++.+++.++++++||+++++.... .....+++++||
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aGf~~~~~~~~~~~~~~~~~~~~~~~varK~ 245 (246)
T 1y8c_A 179 MYISFFVRDGEFYKRFDEEHEERAYKEEDIEKYLKHGQLNILDKVDCYSNKKVEKFTERITYLVKLG 245 (246)
T ss_dssp EEEEEEEECSSSEEEEEEEEEEECCCHHHHHHHHHHTTEEEEEEEESSSSCBCCTTCSEEEEEEEEC
T ss_pred EEEEEEEecCCcccccEEEEEEEcCCHHHHHHHHHHCCCeEEEEEcccccCcCCCCceeEEEEEEec
Confidence 145899999999999999886542 223457778876
No 14
>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A
Probab=99.77 E-value=6.4e-18 Score=142.31 Aligned_cols=156 Identities=11% Similarity=0.113 Sum_probs=108.6
Q ss_pred HHHHHhhhhhccccchhhhhhhhHHHHHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhc
Q psy1420 5 MYEVFENVAKSYDTMNDAMSFGIHRLWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAG 84 (241)
Q Consensus 5 ~~~~f~~~~~~yd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (241)
..++|+..+..|+.... .....+...+.+... .++.+|||+|||+|.++ ..+..
T Consensus 9 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~---~~~~~vLDiGcG~G~~~-------------~~l~~-------- 62 (250)
T 2p7i_A 9 DQEIKDTAGHKYAYNFD--FDVMHPFMVRAFTPF---FRPGNLLELGSFKGDFT-------------SRLQE-------- 62 (250)
T ss_dssp --------------CHH--HHTHHHHHHHHHGGG---CCSSCEEEESCTTSHHH-------------HHHTT--------
T ss_pred CHHHHhhHHHHhcCccc--hhhHHHHHHHHHHhh---cCCCcEEEECCCCCHHH-------------HHHHH--------
Confidence 35677877777755211 111112222222222 45678999999999988 44443
Q ss_pred CCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCC
Q psy1420 85 QWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPI 164 (241)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 164 (241)
....++++|+++.+++.++++.. .++++.++|+..+ .
T Consensus 63 -----------~~~~v~gvD~s~~~~~~a~~~~~-------------------------------~~v~~~~~d~~~~-~ 99 (250)
T 2p7i_A 63 -----------HFNDITCVEASEEAISHAQGRLK-------------------------------DGITYIHSRFEDA-Q 99 (250)
T ss_dssp -----------TCSCEEEEESCHHHHHHHHHHSC-------------------------------SCEEEEESCGGGC-C
T ss_pred -----------hCCcEEEEeCCHHHHHHHHHhhh-------------------------------CCeEEEEccHHHc-C
Confidence 24579999999999999988765 1588999998887 3
Q ss_pred CCCceeEEeeeehhhccccHHHHHHHHH-HhccCCcEEEEEec-----------------------------------CH
Q psy1420 165 ESDSYSAYTIAFGIRNVTRIDKALSEAY-RVLKPGGRFLCLEF-----------------------------------SH 208 (241)
Q Consensus 165 ~~~~~D~V~~~~~l~~~~~~~~~l~~~~-~~LkpgG~l~i~~~-----------------------------------~~ 208 (241)
++++||+|++..++++++++..+++++. ++|||||++++.+. +.
T Consensus 100 ~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (250)
T 2p7i_A 100 LPRRYDNIVLTHVLEHIDDPVALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVKMGIISHNSAVTEAEFAHGHRCTYAL 179 (250)
T ss_dssp CSSCEEEEEEESCGGGCSSHHHHHHHHHHTTEEEEEEEEEEEECTTCHHHHHHHHTTSSSSTTCCCHHHHHTTCCCCCCH
T ss_pred cCCcccEEEEhhHHHhhcCHHHHHHHHHHHhcCCCCEEEEEcCChHHHHHHHHHHcCccccchhcccccccccccccCCH
Confidence 5678999999999999999999999999 99999999999762 22
Q ss_pred HHHHHHHHHCCCceEEEEEec
Q psy1420 209 EEFKSMIESAGFQYVTYENLT 229 (241)
Q Consensus 209 ~~~~~~l~~~Gf~~~~~~~~~ 229 (241)
+++.++++++||++++.....
T Consensus 180 ~~~~~~l~~~Gf~~~~~~~~~ 200 (250)
T 2p7i_A 180 DTLERDASRAGLQVTYRSGIF 200 (250)
T ss_dssp HHHHHHHHHTTCEEEEEEEEE
T ss_pred HHHHHHHHHCCCeEEEEeeeE
Confidence 789999999999999887543
No 15
>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}
Probab=99.76 E-value=6.4e-18 Score=142.59 Aligned_cols=160 Identities=13% Similarity=0.178 Sum_probs=114.0
Q ss_pred HHHhh--hhhccccchhhhhhhhHHHHHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhc
Q psy1420 7 EVFEN--VAKSYDTMNDAMSFGIHRLWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAG 84 (241)
Q Consensus 7 ~~f~~--~~~~yd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (241)
+.|+. ++..|+...............+.+.+.+...++.+|||+|||+|..+ ..++.
T Consensus 5 ~~y~~~~~~~~y~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vLdiG~G~G~~~-------------~~l~~-------- 63 (243)
T 3bkw_A 5 NIYDQPDFFAGYSQLGRSIEGLDGAAEWPALRAMLPEVGGLRIVDLGCGFGWFC-------------RWAHE-------- 63 (243)
T ss_dssp --------------------CGGGCTTHHHHHHHSCCCTTCEEEEETCTTCHHH-------------HHHHH--------
T ss_pred hhhcCHHHHHHHHHhccCCccHHHHHhHHHHHHhccccCCCEEEEEcCcCCHHH-------------HHHHH--------
Confidence 45566 77778776433321111122345667777778889999999999988 44433
Q ss_pred CCCcchhhhcccCC-CceeecCChHhHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCC
Q psy1420 85 QWKPYQYLVESIRQ-FPNQIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELP 163 (241)
Q Consensus 85 ~~~~~~~~~~~~~~-~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 163 (241)
... .++++|+++.+++.++++.. . .++++..+|+...+
T Consensus 64 -----------~~~~~v~~vD~s~~~~~~a~~~~~-------------------------~-----~~~~~~~~d~~~~~ 102 (243)
T 3bkw_A 64 -----------HGASYVLGLDLSEKMLARARAAGP-------------------------D-----TGITYERADLDKLH 102 (243)
T ss_dssp -----------TTCSEEEEEESCHHHHHHHHHTSC-------------------------S-----SSEEEEECCGGGCC
T ss_pred -----------CCCCeEEEEcCCHHHHHHHHHhcc-------------------------c-----CCceEEEcChhhcc
Confidence 223 79999999999999987754 1 25889999999888
Q ss_pred CCCCceeEEeeeehhhccccHHHHHHHHHHhccCCcEEEEEec-------------------------------------
Q psy1420 164 IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEF------------------------------------- 206 (241)
Q Consensus 164 ~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~------------------------------------- 206 (241)
.+.++||+|++..++++++++..+++++.++|||||++++...
T Consensus 103 ~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (243)
T 3bkw_A 103 LPQDSFDLAYSSLALHYVEDVARLFRTVHQALSPGGHFVFSTEHPIYMAPARPGWAIDAEGRRTWPIDRYLVEGPRKTDW 182 (243)
T ss_dssp CCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECHHHHCCSSCSCEECTTSCEEEEECCTTCCEEECTTH
T ss_pred CCCCCceEEEEeccccccchHHHHHHHHHHhcCcCcEEEEEeCCcccccCcCcceeecCCCceEEeecccccccceeeee
Confidence 7778999999999999999999999999999999999998641
Q ss_pred ----------CHHHHHHHHHHCCCceEEEEEe
Q psy1420 207 ----------SHEEFKSMIESAGFQYVTYENL 228 (241)
Q Consensus 207 ----------~~~~~~~~l~~~Gf~~~~~~~~ 228 (241)
+.+++.++++++||+++++...
T Consensus 183 ~~~~~~~~~~t~~~~~~~l~~aGF~~~~~~~~ 214 (243)
T 3bkw_A 183 LAKGVVKHHRTVGTTLNALIRSGFAIEHVEEF 214 (243)
T ss_dssp HHHSCCEEECCHHHHHHHHHHTTCEEEEEEEC
T ss_pred ccCceEEEeccHHHHHHHHHHcCCEeeeeccC
Confidence 3488999999999999988765
No 16
>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*
Probab=99.76 E-value=8.1e-18 Score=143.06 Aligned_cols=139 Identities=23% Similarity=0.389 Sum_probs=117.5
Q ss_pred HHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHH
Q psy1420 32 KDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLR 111 (241)
Q Consensus 32 ~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~ 111 (241)
..-+.+.+..+++.+|||+|||+|..+ ..++. ....++++|+++.+++
T Consensus 10 ~~~~~~~~~~~~~~~vLDiGcG~G~~~-------------~~l~~-------------------~~~~v~~vD~s~~~~~ 57 (239)
T 1xxl_A 10 LGLMIKTAECRAEHRVLDIGAGAGHTA-------------LAFSP-------------------YVQECIGVDATKEMVE 57 (239)
T ss_dssp HHHHHHHHTCCTTCEEEEESCTTSHHH-------------HHHGG-------------------GSSEEEEEESCHHHHH
T ss_pred cchHHHHhCcCCCCEEEEEccCcCHHH-------------HHHHH-------------------hCCEEEEEECCHHHHH
Confidence 345667777889999999999999988 44444 3457999999999999
Q ss_pred HHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHHHH
Q psy1420 112 FLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEA 191 (241)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~~ 191 (241)
.+++++. ..+++ ++.+..+|+..+++++++||+|++..++++++++..+++++
T Consensus 58 ~a~~~~~-------------------------~~~~~--~v~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~ 110 (239)
T 1xxl_A 58 VASSFAQ-------------------------EKGVE--NVRFQQGTAESLPFPDDSFDIITCRYAAHHFSDVRKAVREV 110 (239)
T ss_dssp HHHHHHH-------------------------HHTCC--SEEEEECBTTBCCSCTTCEEEEEEESCGGGCSCHHHHHHHH
T ss_pred HHHHHHH-------------------------HcCCC--CeEEEecccccCCCCCCcEEEEEECCchhhccCHHHHHHHH
Confidence 9998876 44443 68999999999888888999999999999999999999999
Q ss_pred HHhccCCcEEEEEecC---------------------------HHHHHHHHHHCCCceEEEEEec
Q psy1420 192 YRVLKPGGRFLCLEFS---------------------------HEEFKSMIESAGFQYVTYENLT 229 (241)
Q Consensus 192 ~~~LkpgG~l~i~~~~---------------------------~~~~~~~l~~~Gf~~~~~~~~~ 229 (241)
.++|||||++++.+.. .+++.++++++||.+++...+.
T Consensus 111 ~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~~~~~~~~ 175 (239)
T 1xxl_A 111 ARVLKQDGRFLLVDHYAPEDPVLDEFVNHLNRLRDPSHVRESSLSEWQAMFSANQLAYQDIQKWN 175 (239)
T ss_dssp HHHEEEEEEEEEEEECBCSSHHHHHHHHHHHHHHCTTCCCCCBHHHHHHHHHHTTEEEEEEEEEE
T ss_pred HHHcCCCcEEEEEEcCCCCChhHHHHHHHHHHhccccccCCCCHHHHHHHHHHCCCcEEEEEeec
Confidence 9999999999987532 1789999999999988887663
No 17
>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}
Probab=99.76 E-value=2.8e-18 Score=142.77 Aligned_cols=172 Identities=12% Similarity=0.125 Sum_probs=125.7
Q ss_pred hHHHHHhhhhhccccchhhhhhhh-HHHHHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhh
Q psy1420 4 PMYEVFENVAKSYDTMNDAMSFGI-HRLWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLI 82 (241)
Q Consensus 4 ~~~~~f~~~~~~yd~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (241)
.+.+.|+..+..|+.......... .......+++.+...++.+|||+|||+|.++ ..++.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~-------------~~l~~------ 72 (227)
T 3e8s_A 12 ALLDSWHQNAQAWIDAVRHGAIESRRQVTDQAILLAILGRQPERVLDLGCGEGWLL-------------RALAD------ 72 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCHHHHHTHHHHHHHHHHHTCCSEEEEETCTTCHHH-------------HHHHT------
T ss_pred HHHHHHHhhHHHHHHHhcccccccccccccHHHHHHhhcCCCCEEEEeCCCCCHHH-------------HHHHH------
Confidence 566788888877776321111111 1123344555555566789999999999988 44444
Q ss_pred hcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCC
Q psy1420 83 AGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL 162 (241)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 162 (241)
...+++++|+++.+++.++++ . ++.+...++..+
T Consensus 73 -------------~~~~v~~vD~s~~~~~~a~~~-~--------------------------------~~~~~~~~~~~~ 106 (227)
T 3e8s_A 73 -------------RGIEAVGVDGDRTLVDAARAA-G--------------------------------AGEVHLASYAQL 106 (227)
T ss_dssp -------------TTCEEEEEESCHHHHHHHHHT-C--------------------------------SSCEEECCHHHH
T ss_pred -------------CCCEEEEEcCCHHHHHHHHHh-c--------------------------------ccccchhhHHhh
Confidence 245799999999999998865 2 355667776655
Q ss_pred ---CCC-CCceeEEeeeehhhccccHHHHHHHHHHhccCCcEEEEEec--------------------------------
Q psy1420 163 ---PIE-SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEF-------------------------------- 206 (241)
Q Consensus 163 ---~~~-~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~-------------------------------- 206 (241)
+.. ..+||+|++..+++ ..++..+++++.++|||||++++.+.
T Consensus 107 ~~~~~~~~~~fD~v~~~~~l~-~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (227)
T 3e8s_A 107 AEAKVPVGKDYDLICANFALL-HQDIIELLSAMRTLLVPGGALVIQTLHPWSVADGDYQDGWREESFAGFAGDWQPMPWY 185 (227)
T ss_dssp HTTCSCCCCCEEEEEEESCCC-SSCCHHHHHHHHHTEEEEEEEEEEECCTTTTCTTCCSCEEEEECCTTSSSCCCCEEEE
T ss_pred cccccccCCCccEEEECchhh-hhhHHHHHHHHHHHhCCCeEEEEEecCccccCccccccccchhhhhccccCcccceEE
Confidence 433 34599999999999 88999999999999999999999764
Q ss_pred --CHHHHHHHHHHCCCceEEEEEecC-----ceeEEEeeecC
Q psy1420 207 --SHEEFKSMIESAGFQYVTYENLTF-----GVVAIHSGFKL 241 (241)
Q Consensus 207 --~~~~~~~~l~~~Gf~~~~~~~~~~-----~~~~~~~~~~~ 241 (241)
+.+++.++++++||+++++..... ....+++++||
T Consensus 186 ~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~~va~k~ 227 (227)
T 3e8s_A 186 FRTLASWLNALDMAGLRLVSLQEPQHPQSAVPQSLLMVAERH 227 (227)
T ss_dssp ECCHHHHHHHHHHTTEEEEEEECCCCTTCSSCSCEEEEEEEC
T ss_pred EecHHHHHHHHHHcCCeEEEEecCCCCCCCCceeEEEEeecC
Confidence 348999999999999999886432 23556677775
No 18
>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*
Probab=99.76 E-value=9.7e-18 Score=144.50 Aligned_cols=140 Identities=18% Similarity=0.202 Sum_probs=117.0
Q ss_pred HHHHHhhcC-CCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhH
Q psy1420 32 KDIFIDRLG-PTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRL 110 (241)
Q Consensus 32 ~~~~~~~l~-~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~ 110 (241)
...++..+. ..++.+|||+|||+|..+ ..++. .....++++|+++.++
T Consensus 34 ~~~~l~~l~~~~~~~~vLDiGcG~G~~~-------------~~la~------------------~~~~~v~gvD~s~~~~ 82 (267)
T 3kkz_A 34 TLKALSFIDNLTEKSLIADIGCGTGGQT-------------MVLAG------------------HVTGQVTGLDFLSGFI 82 (267)
T ss_dssp HHHHHTTCCCCCTTCEEEEETCTTCHHH-------------HHHHT------------------TCSSEEEEEESCHHHH
T ss_pred HHHHHHhcccCCCCCEEEEeCCCCCHHH-------------HHHHh------------------ccCCEEEEEeCCHHHH
Confidence 344555555 577889999999999988 44443 1245899999999999
Q ss_pred HHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHHH
Q psy1420 111 RFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSE 190 (241)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~ 190 (241)
+.+++++. ..+++ +++++..+|+..++.+.++||+|++..+++++ ++..++++
T Consensus 83 ~~a~~~~~-------------------------~~~~~-~~v~~~~~d~~~~~~~~~~fD~i~~~~~~~~~-~~~~~l~~ 135 (267)
T 3kkz_A 83 DIFNRNAR-------------------------QSGLQ-NRVTGIVGSMDDLPFRNEELDLIWSEGAIYNI-GFERGLNE 135 (267)
T ss_dssp HHHHHHHH-------------------------HTTCT-TTEEEEECCTTSCCCCTTCEEEEEESSCGGGT-CHHHHHHH
T ss_pred HHHHHHHH-------------------------HcCCC-cCcEEEEcChhhCCCCCCCEEEEEEcCCceec-CHHHHHHH
Confidence 99999987 55655 57999999999988878899999999999999 89999999
Q ss_pred HHHhccCCcEEEEEecC-----------------------HHHHHHHHHHCCCceEEEEEec
Q psy1420 191 AYRVLKPGGRFLCLEFS-----------------------HEEFKSMIESAGFQYVTYENLT 229 (241)
Q Consensus 191 ~~~~LkpgG~l~i~~~~-----------------------~~~~~~~l~~~Gf~~~~~~~~~ 229 (241)
+.++|||||++++.+.. .+++.++++++||++++...+.
T Consensus 136 ~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~ 197 (267)
T 3kkz_A 136 WRKYLKKGGYLAVSECSWFTDERPAEINDFWMDAYPEIDTIPNQVAKIHKAGYLPVATFILP 197 (267)
T ss_dssp HGGGEEEEEEEEEEEEEESSSCCCHHHHHHHHHHCTTCEEHHHHHHHHHHTTEEEEEEEECC
T ss_pred HHHHcCCCCEEEEEEeeecCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHCCCEEEEEEECC
Confidence 99999999999997642 1788999999999999888764
No 19
>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18
Probab=99.76 E-value=7.1e-18 Score=147.34 Aligned_cols=142 Identities=16% Similarity=0.134 Sum_probs=118.9
Q ss_pred HHHHHHhhc----CCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCC
Q psy1420 31 WKDIFIDRL----GPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIP 106 (241)
Q Consensus 31 ~~~~~~~~l----~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s 106 (241)
..+.+++.+ ...++.+|||+|||+|..+ ..++. ....+++++|++
T Consensus 66 ~~~~l~~~l~~~~~~~~~~~vLDiGcG~G~~~-------------~~l~~------------------~~~~~v~gvD~s 114 (297)
T 2o57_A 66 TDEWLASELAMTGVLQRQAKGLDLGAGYGGAA-------------RFLVR------------------KFGVSIDCLNIA 114 (297)
T ss_dssp HHHHHHHHHHHTTCCCTTCEEEEETCTTSHHH-------------HHHHH------------------HHCCEEEEEESC
T ss_pred HHHHHHHHhhhccCCCCCCEEEEeCCCCCHHH-------------HHHHH------------------HhCCEEEEEeCC
Confidence 345566666 6678889999999999988 44443 113579999999
Q ss_pred hHhHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHH
Q psy1420 107 NPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDK 186 (241)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~ 186 (241)
+.+++.++++.. ..++. +++++..+|+..+|+++++||+|++..++++++++..
T Consensus 115 ~~~~~~a~~~~~-------------------------~~~~~-~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~ 168 (297)
T 2o57_A 115 PVQNKRNEEYNN-------------------------QAGLA-DNITVKYGSFLEIPCEDNSYDFIWSQDAFLHSPDKLK 168 (297)
T ss_dssp HHHHHHHHHHHH-------------------------HHTCT-TTEEEEECCTTSCSSCTTCEEEEEEESCGGGCSCHHH
T ss_pred HHHHHHHHHHHH-------------------------hcCCC-cceEEEEcCcccCCCCCCCEeEEEecchhhhcCCHHH
Confidence 999999998876 45554 5799999999999988889999999999999999999
Q ss_pred HHHHHHHhccCCcEEEEEecC------------------------HHHHHHHHHHCCCceEEEEEec
Q psy1420 187 ALSEAYRVLKPGGRFLCLEFS------------------------HEEFKSMIESAGFQYVTYENLT 229 (241)
Q Consensus 187 ~l~~~~~~LkpgG~l~i~~~~------------------------~~~~~~~l~~~Gf~~~~~~~~~ 229 (241)
+++++.++|||||++++.+.. .+++.++++++||++++...++
T Consensus 169 ~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~ 235 (297)
T 2o57_A 169 VFQECARVLKPRGVMAITDPMKEDGIDKSSIQPILDRIKLHDMGSLGLYRSLAKECGLVTLRTFSRP 235 (297)
T ss_dssp HHHHHHHHEEEEEEEEEEEEEECTTCCGGGGHHHHHHHTCSSCCCHHHHHHHHHHTTEEEEEEEECH
T ss_pred HHHHHHHHcCCCeEEEEEEeccCCCCchHHHHHHHHHhcCCCCCCHHHHHHHHHHCCCeEEEEEECc
Confidence 999999999999999987632 2778899999999999888764
No 20
>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}
Probab=99.75 E-value=7.2e-18 Score=140.11 Aligned_cols=153 Identities=18% Similarity=0.161 Sum_probs=121.1
Q ss_pred chHHHHHhhhhhccccchhhhhhhhHHHHHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhh
Q psy1420 3 LPMYEVFENVAKSYDTMNDAMSFGIHRLWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLI 82 (241)
Q Consensus 3 ~~~~~~f~~~~~~yd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (241)
+...++|+..+..|+..... ......++..+ .++.+|||+|||+|.++ ..++.
T Consensus 11 ~~~~~~~~~~~~~y~~~~~~------~~~~~~~~~~~--~~~~~vLDiGcG~G~~~-------------~~l~~------ 63 (211)
T 3e23_A 11 DDTLRFYRGNATAYAERQPR------SATLTKFLGEL--PAGAKILELGCGAGYQA-------------EAMLA------ 63 (211)
T ss_dssp HHHHHHHHHSHHHHTTCCCC------CHHHHHHHTTS--CTTCEEEESSCTTSHHH-------------HHHHH------
T ss_pred HHHHHHHHHHHHHHhhccch------hHHHHHHHHhc--CCCCcEEEECCCCCHHH-------------HHHHH------
Confidence 45678899888888875332 12223333333 46779999999999988 44444
Q ss_pred hcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCC
Q psy1420 83 AGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL 162 (241)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 162 (241)
....++++|+++.+++.++++.. +.+..+|+..+
T Consensus 64 -------------~~~~v~~vD~s~~~~~~a~~~~~---------------------------------~~~~~~d~~~~ 97 (211)
T 3e23_A 64 -------------AGFDVDATDGSPELAAEASRRLG---------------------------------RPVRTMLFHQL 97 (211)
T ss_dssp -------------TTCEEEEEESCHHHHHHHHHHHT---------------------------------SCCEECCGGGC
T ss_pred -------------cCCeEEEECCCHHHHHHHHHhcC---------------------------------CceEEeeeccC
Confidence 34579999999999999987754 55678888888
Q ss_pred CCCCCceeEEeeeehhhccc--cHHHHHHHHHHhccCCcEEEEEec-----------------CHHHHHHHHHHCC-Cce
Q psy1420 163 PIESDSYSAYTIAFGIRNVT--RIDKALSEAYRVLKPGGRFLCLEF-----------------SHEEFKSMIESAG-FQY 222 (241)
Q Consensus 163 ~~~~~~~D~V~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~i~~~-----------------~~~~~~~~l~~~G-f~~ 222 (241)
+ +.++||+|++..++++++ ++..+++++.++|||||++++... +.+++.++++++| |++
T Consensus 98 ~-~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG~f~~ 176 (211)
T 3e23_A 98 D-AIDAYDAVWAHACLLHVPRDELADVLKLIWRALKPGGLFYASYKSGEGEGRDKLARYYNYPSEEWLRARYAEAGTWAS 176 (211)
T ss_dssp C-CCSCEEEEEECSCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECCSSCEECTTSCEECCCCHHHHHHHHHHHCCCSE
T ss_pred C-CCCcEEEEEecCchhhcCHHHHHHHHHHHHHhcCCCcEEEEEEcCCCcccccccchhccCCCHHHHHHHHHhCCCcEE
Confidence 7 678999999999999998 788999999999999999998743 3489999999999 999
Q ss_pred EEEEEec
Q psy1420 223 VTYENLT 229 (241)
Q Consensus 223 ~~~~~~~ 229 (241)
+++....
T Consensus 177 ~~~~~~~ 183 (211)
T 3e23_A 177 VAVESSE 183 (211)
T ss_dssp EEEEEEE
T ss_pred EEEEecc
Confidence 9888664
No 21
>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}
Probab=99.75 E-value=2.1e-18 Score=148.63 Aligned_cols=150 Identities=15% Similarity=0.278 Sum_probs=114.9
Q ss_pred HHhhhhhccccchhhhhhhhHHHHHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCC
Q psy1420 8 VFENVAKSYDTMNDAMSFGIHRLWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWK 87 (241)
Q Consensus 8 ~f~~~~~~yd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (241)
.|+.++..|+..... ...+.+.+.+.+...++.+|||+|||+|.++ ..+..
T Consensus 4 ~y~~~a~~y~~~~~~-----~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~-------------~~l~~----------- 54 (261)
T 3ege_A 4 IYNSIGKQYSQTRVP-----DIRIVNAIINLLNLPKGSVIADIGAGTGGYS-------------VALAN----------- 54 (261)
T ss_dssp ---------CCSBCC-----CHHHHHHHHHHHCCCTTCEEEEETCTTSHHH-------------HHHHT-----------
T ss_pred HHHHHHHHHhhcccc-----cHHHHHHHHHHhCCCCCCEEEEEcCcccHHH-------------HHHHh-----------
Confidence 688899999875322 2245666777777778889999999999988 44443
Q ss_pred cchhhhcccCCCceeecCChHhHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCC
Q psy1420 88 PYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESD 167 (241)
Q Consensus 88 ~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 167 (241)
...+++++|+|+.+++.++++ .++++...|+..++++++
T Consensus 55 --------~~~~v~gvD~s~~~~~~a~~~---------------------------------~~~~~~~~d~~~~~~~~~ 93 (261)
T 3ege_A 55 --------QGLFVYAVEPSIVMRQQAVVH---------------------------------PQVEWFTGYAENLALPDK 93 (261)
T ss_dssp --------TTCEEEEECSCHHHHHSSCCC---------------------------------TTEEEECCCTTSCCSCTT
T ss_pred --------CCCEEEEEeCCHHHHHHHHhc---------------------------------cCCEEEECchhhCCCCCC
Confidence 356899999999888765422 158899999999888888
Q ss_pred ceeEEeeeehhhccccHHHHHHHHHHhccCCcEEEEEecCH--------------------------HHHHHHHHHCCCc
Q psy1420 168 SYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH--------------------------EEFKSMIESAGFQ 221 (241)
Q Consensus 168 ~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~--------------------------~~~~~~l~~~Gf~ 221 (241)
+||+|++..++++++++..++++++++|| ||++++.++.. +.+. +++++||.
T Consensus 94 ~fD~v~~~~~l~~~~~~~~~l~~~~~~Lk-gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~aGF~ 171 (261)
T 3ege_A 94 SVDGVISILAIHHFSHLEKSFQEMQRIIR-DGTIVLLTFDIRLAQRIWLYDYFPFLWEDALRFLPLDEQIN-LLQENTKR 171 (261)
T ss_dssp CBSEEEEESCGGGCSSHHHHHHHHHHHBC-SSCEEEEEECGGGCCCCGGGGTCHHHHHHHHTSCCHHHHHH-HHHHHHCS
T ss_pred CEeEEEEcchHhhccCHHHHHHHHHHHhC-CcEEEEEEcCCchhHHHHHHHHHHHHhhhhhhhCCCHHHHH-HHHHcCCC
Confidence 99999999999999999999999999999 99988887653 5677 99999999
Q ss_pred eEEEEEec
Q psy1420 222 YVTYENLT 229 (241)
Q Consensus 222 ~~~~~~~~ 229 (241)
.++.....
T Consensus 172 ~v~~~~~~ 179 (261)
T 3ege_A 172 RVEAIPFL 179 (261)
T ss_dssp EEEEEECC
T ss_pred ceeEEEec
Confidence 98887763
No 22
>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*
Probab=99.75 E-value=1.8e-17 Score=146.54 Aligned_cols=140 Identities=19% Similarity=0.251 Sum_probs=117.8
Q ss_pred HHHHHhhcC-CCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhH
Q psy1420 32 KDIFIDRLG-PTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRL 110 (241)
Q Consensus 32 ~~~~~~~l~-~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~ 110 (241)
.+.+++.+. ..++.+|||+|||+|..+ ..++. ....+++++|+++.++
T Consensus 105 ~~~l~~~l~~~~~~~~vLDiGcG~G~~~-------------~~la~------------------~~~~~v~gvD~s~~~~ 153 (312)
T 3vc1_A 105 AEFLMDHLGQAGPDDTLVDAGCGRGGSM-------------VMAHR------------------RFGSRVEGVTLSAAQA 153 (312)
T ss_dssp HHHHHTTSCCCCTTCEEEEESCTTSHHH-------------HHHHH------------------HHCCEEEEEESCHHHH
T ss_pred HHHHHHHhccCCCCCEEEEecCCCCHHH-------------HHHHH------------------HcCCEEEEEeCCHHHH
Confidence 345667776 678889999999999988 44443 1145799999999999
Q ss_pred HHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHHH
Q psy1420 111 RFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSE 190 (241)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~ 190 (241)
+.+++++. ..++. +++++..+|+..++++.++||+|++..+++++ ++..++++
T Consensus 154 ~~a~~~~~-------------------------~~~~~-~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~-~~~~~l~~ 206 (312)
T 3vc1_A 154 DFGNRRAR-------------------------ELRID-DHVRSRVCNMLDTPFDKGAVTASWNNESTMYV-DLHDLFSE 206 (312)
T ss_dssp HHHHHHHH-------------------------HTTCT-TTEEEEECCTTSCCCCTTCEEEEEEESCGGGS-CHHHHHHH
T ss_pred HHHHHHHH-------------------------HcCCC-CceEEEECChhcCCCCCCCEeEEEECCchhhC-CHHHHHHH
Confidence 99999987 55555 57999999999998888899999999999999 59999999
Q ss_pred HHHhccCCcEEEEEecC-------------------------HHHHHHHHHHCCCceEEEEEec
Q psy1420 191 AYRVLKPGGRFLCLEFS-------------------------HEEFKSMIESAGFQYVTYENLT 229 (241)
Q Consensus 191 ~~~~LkpgG~l~i~~~~-------------------------~~~~~~~l~~~Gf~~~~~~~~~ 229 (241)
+.++|||||++++.+.. .+++.++++++||++++.+.+.
T Consensus 207 ~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~aGf~~~~~~~~~ 270 (312)
T 3vc1_A 207 HSRFLKVGGRYVTITGCWNPRYGQPSKWVSQINAHFECNIHSRREYLRAMADNRLVPHTIVDLT 270 (312)
T ss_dssp HHHHEEEEEEEEEEEEEECTTTCSCCHHHHHHHHHHTCCCCBHHHHHHHHHTTTEEEEEEEECH
T ss_pred HHHHcCCCcEEEEEEccccccccchhHHHHHHHhhhcCCCCCHHHHHHHHHHCCCEEEEEEeCC
Confidence 99999999999987621 2788999999999999988764
No 23
>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*
Probab=99.75 E-value=8.9e-18 Score=144.25 Aligned_cols=133 Identities=17% Similarity=0.225 Sum_probs=109.0
Q ss_pred CCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCC
Q psy1420 43 HDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPI 122 (241)
Q Consensus 43 ~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~ 122 (241)
++.+|||+|||+|..+ ..++. ....++++|+++.+++.++++..
T Consensus 50 ~~~~vLDiGcG~G~~~-------------~~l~~-------------------~~~~v~gvD~s~~~~~~a~~~~~---- 93 (263)
T 3pfg_A 50 KAASLLDVACGTGMHL-------------RHLAD-------------------SFGTVEGLELSADMLAIARRRNP---- 93 (263)
T ss_dssp TCCEEEEETCTTSHHH-------------HHHTT-------------------TSSEEEEEESCHHHHHHHHHHCT----
T ss_pred CCCcEEEeCCcCCHHH-------------HHHHH-------------------cCCeEEEEECCHHHHHHHHhhCC----
Confidence 5679999999999988 44444 34579999999999999987754
Q ss_pred ccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeee-hhhccc---cHHHHHHHHHHhccCC
Q psy1420 123 ESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAF-GIRNVT---RIDKALSEAYRVLKPG 198 (241)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~-~l~~~~---~~~~~l~~~~~~Lkpg 198 (241)
+++++++|+..++. .++||+|++.. ++++++ +...+++++.++||||
T Consensus 94 ----------------------------~~~~~~~d~~~~~~-~~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pg 144 (263)
T 3pfg_A 94 ----------------------------DAVLHHGDMRDFSL-GRRFSAVTCMFSSIGHLAGQAELDAALERFAAHVLPD 144 (263)
T ss_dssp ----------------------------TSEEEECCTTTCCC-SCCEEEEEECTTGGGGSCHHHHHHHHHHHHHHTEEEE
T ss_pred ----------------------------CCEEEECChHHCCc-cCCcCEEEEcCchhhhcCCHHHHHHHHHHHHHhcCCC
Confidence 57899999998877 67899999998 999885 5668899999999999
Q ss_pred cEEEEEe---------------------------------------------------------------cCHHHHHHHH
Q psy1420 199 GRFLCLE---------------------------------------------------------------FSHEEFKSMI 215 (241)
Q Consensus 199 G~l~i~~---------------------------------------------------------------~~~~~~~~~l 215 (241)
|++++.. ++.+++.++|
T Consensus 145 G~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~el~~ll 224 (263)
T 3pfg_A 145 GVVVVEPWWFPENFTPGYVAAGTVEAGGTTVTRVSHSSREGEATRIEVHYLVAGPDRGITHHEESHRITLFTREQYERAF 224 (263)
T ss_dssp EEEEECCCCCTTTCCTTEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEETTTEEEEEEEEEEEECCCHHHHHHHH
T ss_pred cEEEEEeccChhhccccccccceeccCCceeEEEEEEEecCcEEEEEEEEEEecCCCcEEEEEEEEEEEeecHHHHHHHH
Confidence 9999841 1348999999
Q ss_pred HHCCCceEEEEEecCceeEEEeeecC
Q psy1420 216 ESAGFQYVTYENLTFGVVAIHSGFKL 241 (241)
Q Consensus 216 ~~~Gf~~~~~~~~~~~~~~~~~~~~~ 241 (241)
+++||+++++... .+...+++++||
T Consensus 225 ~~aGF~v~~~~~~-~~~~~~~va~K~ 249 (263)
T 3pfg_A 225 TAAGLSVEFMPGG-PSGRGLFTGLPG 249 (263)
T ss_dssp HHTTEEEEEESST-TTSSCEEEEEEC
T ss_pred HHCCCEEEEeeCC-CCCceeEEEecC
Confidence 9999998887544 455667888886
No 24
>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A
Probab=99.75 E-value=2.4e-17 Score=140.61 Aligned_cols=162 Identities=19% Similarity=0.244 Sum_probs=122.1
Q ss_pred HHHHhhhhhccccchhhhhhhhHHHHHHHHHh-hcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhc
Q psy1420 6 YEVFENVAKSYDTMNDAMSFGIHRLWKDIFID-RLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAG 84 (241)
Q Consensus 6 ~~~f~~~~~~yd~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (241)
...|+..+..|+..... .......+.+.+.. .....++.+|||+|||+|..+ ..++.
T Consensus 2 ~~~~~~~a~~y~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~-------------~~l~~-------- 59 (263)
T 2yqz_A 2 SSALLRAAYAYDRLRAH-PPEVAGQIATAMASAVHPKGEEPVFLELGVGTGRIA-------------LPLIA-------- 59 (263)
T ss_dssp CHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHCCCSSSCCEEEEETCTTSTTH-------------HHHHT--------
T ss_pred CCchHHHHHHHhhhccc-ChHHHHHHHHHHHHhhcCCCCCCEEEEeCCcCCHHH-------------HHHHH--------
Confidence 45688888888875322 22223333344433 224467889999999999998 44444
Q ss_pred CCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCC
Q psy1420 85 QWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPI 164 (241)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 164 (241)
....++++|+|+.+++.+++++. .. .+++.+..+|+..+++
T Consensus 60 -----------~~~~v~~vD~s~~~~~~a~~~~~-------------------------~~---~~~~~~~~~d~~~~~~ 100 (263)
T 2yqz_A 60 -----------RGYRYIALDADAAMLEVFRQKIA-------------------------GV---DRKVQVVQADARAIPL 100 (263)
T ss_dssp -----------TTCEEEEEESCHHHHHHHHHHTT-------------------------TS---CTTEEEEESCTTSCCS
T ss_pred -----------CCCEEEEEECCHHHHHHHHHHhh-------------------------cc---CCceEEEEcccccCCC
Confidence 24579999999999999988763 11 1368999999999888
Q ss_pred CCCceeEEeeeehhhccccHHHHHHHHHHhccCCcEEEEE--ec---C---------------------------HHHHH
Q psy1420 165 ESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCL--EF---S---------------------------HEEFK 212 (241)
Q Consensus 165 ~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~--~~---~---------------------------~~~~~ 212 (241)
++++||+|++..++++++++..+++++.++|||||++++. .. . .+++.
T Consensus 101 ~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (263)
T 2yqz_A 101 PDESVHGVIVVHLWHLVPDWPKVLAEAIRVLKPGGALLEGWDQAEASPEWTLQERWRAFAAEEGFPVERGLHAKRLKEVE 180 (263)
T ss_dssp CTTCEEEEEEESCGGGCTTHHHHHHHHHHHEEEEEEEEEEEEEECCCHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHH
T ss_pred CCCCeeEEEECCchhhcCCHHHHHHHHHHHCCCCcEEEEEecCCCccHHHHHHHHHHHHHHHhCCCcccccccCCHHHHH
Confidence 7889999999999999999999999999999999999875 11 1 05677
Q ss_pred HHHHHCCCceEEEEEe
Q psy1420 213 SMIESAGFQYVTYENL 228 (241)
Q Consensus 213 ~~l~~~Gf~~~~~~~~ 228 (241)
++++++||.++.....
T Consensus 181 ~~l~~~Gf~~~~~~~~ 196 (263)
T 2yqz_A 181 EALRRLGLKPRTREVA 196 (263)
T ss_dssp HHHHHTTCCCEEEEEE
T ss_pred HHHHHcCCCcceEEEe
Confidence 8899999997765543
No 25
>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42
Probab=99.74 E-value=2.7e-17 Score=139.83 Aligned_cols=139 Identities=16% Similarity=0.229 Sum_probs=114.7
Q ss_pred HHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhH
Q psy1420 31 WKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRL 110 (241)
Q Consensus 31 ~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~ 110 (241)
+...+++.+...++.+|||+|||+|..+ ..++. .....++++|+++.++
T Consensus 81 ~~~~~l~~l~~~~~~~vLDiG~G~G~~~-------------~~l~~------------------~~~~~v~~vD~s~~~~ 129 (254)
T 1xtp_A 81 GSRNFIASLPGHGTSRALDCGAGIGRIT-------------KNLLT------------------KLYATTDLLEPVKHML 129 (254)
T ss_dssp HHHHHHHTSTTCCCSEEEEETCTTTHHH-------------HHTHH------------------HHCSEEEEEESCHHHH
T ss_pred HHHHHHHhhcccCCCEEEEECCCcCHHH-------------HHHHH------------------hhcCEEEEEeCCHHHH
Confidence 3456667777778889999999999988 44443 1234699999999999
Q ss_pred HHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhcc--ccHHHHH
Q psy1420 111 RFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNV--TRIDKAL 188 (241)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~--~~~~~~l 188 (241)
+.++++.. .. .++++.+.|+..++.+.++||+|++..+++++ .++..++
T Consensus 130 ~~a~~~~~-------------------------~~----~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~l 180 (254)
T 1xtp_A 130 EEAKRELA-------------------------GM----PVGKFILASMETATLPPNTYDLIVIQWTAIYLTDADFVKFF 180 (254)
T ss_dssp HHHHHHTT-------------------------TS----SEEEEEESCGGGCCCCSSCEEEEEEESCGGGSCHHHHHHHH
T ss_pred HHHHHHhc-------------------------cC----CceEEEEccHHHCCCCCCCeEEEEEcchhhhCCHHHHHHHH
Confidence 99998876 21 36889999999888777899999999999999 4588999
Q ss_pred HHHHHhccCCcEEEEEec------------------CHHHHHHHHHHCCCceEEEEEec
Q psy1420 189 SEAYRVLKPGGRFLCLEF------------------SHEEFKSMIESAGFQYVTYENLT 229 (241)
Q Consensus 189 ~~~~~~LkpgG~l~i~~~------------------~~~~~~~~l~~~Gf~~~~~~~~~ 229 (241)
+++.++|||||++++.+. +.+++.++++++||++++.....
T Consensus 181 ~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~ 239 (254)
T 1xtp_A 181 KHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKRLFNESGVRVVKEAFQE 239 (254)
T ss_dssp HHHHHHEEEEEEEEEEEEBC--CCEEEETTTTEEEBCHHHHHHHHHHHTCCEEEEEECT
T ss_pred HHHHHhcCCCeEEEEEecCCCcccceecccCCcccCCHHHHHHHHHHCCCEEEEeeecC
Confidence 999999999999999773 23899999999999999887653
No 26
>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*
Probab=99.74 E-value=1.3e-17 Score=142.24 Aligned_cols=140 Identities=19% Similarity=0.230 Sum_probs=115.9
Q ss_pred HHHHHhhc-CCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhH
Q psy1420 32 KDIFIDRL-GPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRL 110 (241)
Q Consensus 32 ~~~~~~~l-~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~ 110 (241)
...++..+ ...++.+|||+|||+|..+ ..++. ....+++++|+++.++
T Consensus 34 ~~~~l~~l~~~~~~~~vLDiG~G~G~~~-------------~~l~~------------------~~~~~v~~vD~s~~~~ 82 (257)
T 3f4k_A 34 TRKAVSFINELTDDAKIADIGCGTGGQT-------------LFLAD------------------YVKGQITGIDLFPDFI 82 (257)
T ss_dssp HHHHHTTSCCCCTTCEEEEETCTTSHHH-------------HHHHH------------------HCCSEEEEEESCHHHH
T ss_pred HHHHHHHHhcCCCCCeEEEeCCCCCHHH-------------HHHHH------------------hCCCeEEEEECCHHHH
Confidence 34455555 4567889999999999988 44443 1223899999999999
Q ss_pred HHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHHH
Q psy1420 111 RFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSE 190 (241)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~ 190 (241)
+.+++++. ..++. .++++.++|+..+|.+.++||+|++..+++++ ++..++++
T Consensus 83 ~~a~~~~~-------------------------~~~~~-~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~-~~~~~l~~ 135 (257)
T 3f4k_A 83 EIFNENAV-------------------------KANCA-DRVKGITGSMDNLPFQNEELDLIWSEGAIYNI-GFERGMNE 135 (257)
T ss_dssp HHHHHHHH-------------------------HTTCT-TTEEEEECCTTSCSSCTTCEEEEEEESCSCCC-CHHHHHHH
T ss_pred HHHHHHHH-------------------------HcCCC-CceEEEECChhhCCCCCCCEEEEEecChHhhc-CHHHHHHH
Confidence 99999987 55655 46999999999988888899999999999998 79999999
Q ss_pred HHHhccCCcEEEEEecC-----------------------HHHHHHHHHHCCCceEEEEEec
Q psy1420 191 AYRVLKPGGRFLCLEFS-----------------------HEEFKSMIESAGFQYVTYENLT 229 (241)
Q Consensus 191 ~~~~LkpgG~l~i~~~~-----------------------~~~~~~~l~~~Gf~~~~~~~~~ 229 (241)
+.++|||||++++.+.. .+++.++++++||++++.....
T Consensus 136 ~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~ 197 (257)
T 3f4k_A 136 WSKYLKKGGFIAVSEASWFTSERPAEIEDFWMDAYPEISVIPTCIDKMERAGYTPTAHFILP 197 (257)
T ss_dssp HHTTEEEEEEEEEEEEEESSSCCCHHHHHHHHHHCTTCCBHHHHHHHHHHTTEEEEEEEECC
T ss_pred HHHHcCCCcEEEEEEeeccCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHCCCeEEEEEECC
Confidence 99999999999998732 2788999999999999877664
No 27
>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*
Probab=99.74 E-value=9e-18 Score=147.50 Aligned_cols=138 Identities=14% Similarity=0.198 Sum_probs=114.5
Q ss_pred HHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHH
Q psy1420 32 KDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLR 111 (241)
Q Consensus 32 ~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~ 111 (241)
.+.+++.+..+++.+|||+|||+|..+ ..++. ....+++++|+|+.+++
T Consensus 61 ~~~~~~~~~~~~~~~vLDiGcG~G~~~-------------~~la~------------------~~~~~v~gvD~s~~~~~ 109 (302)
T 3hem_A 61 RKLALDKLNLEPGMTLLDIGCGWGSTM-------------RHAVA------------------EYDVNVIGLTLSENQYA 109 (302)
T ss_dssp HHHHHHTTCCCTTCEEEEETCTTSHHH-------------HHHHH------------------HHCCEEEEEECCHHHHH
T ss_pred HHHHHHHcCCCCcCEEEEeeccCcHHH-------------HHHHH------------------hCCCEEEEEECCHHHHH
Confidence 355677777788999999999999988 44444 11367999999999999
Q ss_pred HHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccH-------
Q psy1420 112 FLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRI------- 184 (241)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~------- 184 (241)
.+++++. ..++. +++++..+|+.++ +++||+|++..++++++++
T Consensus 110 ~a~~~~~-------------------------~~~~~-~~v~~~~~d~~~~---~~~fD~v~~~~~~~~~~d~~~~~~~~ 160 (302)
T 3hem_A 110 HDKAMFD-------------------------EVDSP-RRKEVRIQGWEEF---DEPVDRIVSLGAFEHFADGAGDAGFE 160 (302)
T ss_dssp HHHHHHH-------------------------HSCCS-SCEEEEECCGGGC---CCCCSEEEEESCGGGTTCCSSCCCTT
T ss_pred HHHHHHH-------------------------hcCCC-CceEEEECCHHHc---CCCccEEEEcchHHhcCccccccchh
Confidence 9999987 55554 5789999999876 5789999999999999665
Q ss_pred --HHHHHHHHHhccCCcEEEEEecCH-------------------------------------HHHHHHHHHCCCceEEE
Q psy1420 185 --DKALSEAYRVLKPGGRFLCLEFSH-------------------------------------EEFKSMIESAGFQYVTY 225 (241)
Q Consensus 185 --~~~l~~~~~~LkpgG~l~i~~~~~-------------------------------------~~~~~~l~~~Gf~~~~~ 225 (241)
..+++++.++|||||++++.++.. +++.++++++||++++.
T Consensus 161 ~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~s~~~~~~~l~~aGf~~~~~ 240 (302)
T 3hem_A 161 RYDTFFKKFYNLTPDDGRMLLHTITIPDKEEAQELGLTSPMSLLRFIKFILTEIFPGGRLPRISQVDYYSSNAGWKVERY 240 (302)
T ss_dssp HHHHHHHHHHHSSCTTCEEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHHTCTTCCCCCHHHHHHHHHHHTCEEEEE
T ss_pred HHHHHHHHHHHhcCCCcEEEEEEEeccCccchhhccccccccccchHHHHHHhcCCCCCCCCHHHHHHHHHhCCcEEEEE
Confidence 799999999999999999876421 57889999999999988
Q ss_pred EEec
Q psy1420 226 ENLT 229 (241)
Q Consensus 226 ~~~~ 229 (241)
+...
T Consensus 241 ~~~~ 244 (302)
T 3hem_A 241 HRIG 244 (302)
T ss_dssp EECG
T ss_pred EeCc
Confidence 8764
No 28
>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}
Probab=99.74 E-value=1.5e-17 Score=146.51 Aligned_cols=145 Identities=15% Similarity=0.089 Sum_probs=120.9
Q ss_pred CCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcC
Q psy1420 41 PTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEEL 120 (241)
Q Consensus 41 ~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~ 120 (241)
..++.+|||+|||+|..+ ..++. .. .....++++|+++.+++.+++++.
T Consensus 116 l~~~~~vLDiGcG~G~~~-------------~~la~------~~----------~~~~~v~gvD~s~~~~~~a~~~~~-- 164 (305)
T 3ocj_A 116 LRPGCVVASVPCGWMSEL-------------LALDY------SA----------CPGVQLVGIDYDPEALDGATRLAA-- 164 (305)
T ss_dssp CCTTCEEEETTCTTCHHH-------------HTSCC------TT----------CTTCEEEEEESCHHHHHHHHHHHT--
T ss_pred CCCCCEEEEecCCCCHHH-------------HHHHH------hc----------CCCCeEEEEECCHHHHHHHHHHHH--
Confidence 357789999999999988 33321 01 145689999999999999999987
Q ss_pred CCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHH---HHHHHHHhccC
Q psy1420 121 PIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDK---ALSEAYRVLKP 197 (241)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~---~l~~~~~~Lkp 197 (241)
..++. .+++++++|+..++.+ ++||+|++..++++++++.. +++++.++|||
T Consensus 165 -----------------------~~~~~-~~v~~~~~d~~~~~~~-~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~Lkp 219 (305)
T 3ocj_A 165 -----------------------GHALA-GQITLHRQDAWKLDTR-EGYDLLTSNGLNIYEPDDARVTELYRRFWQALKP 219 (305)
T ss_dssp -----------------------TSTTG-GGEEEEECCGGGCCCC-SCEEEEECCSSGGGCCCHHHHHHHHHHHHHHEEE
T ss_pred -----------------------hcCCC-CceEEEECchhcCCcc-CCeEEEEECChhhhcCCHHHHHHHHHHHHHhcCC
Confidence 44544 4689999999998876 89999999999999988875 79999999999
Q ss_pred CcEEEEEec-----------------------------------------CHHHHHHHHHHCCCceEEEEEecCceeEEE
Q psy1420 198 GGRFLCLEF-----------------------------------------SHEEFKSMIESAGFQYVTYENLTFGVVAIH 236 (241)
Q Consensus 198 gG~l~i~~~-----------------------------------------~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~ 236 (241)
||++++.++ +.+++.++++++||+++++.....+....+
T Consensus 220 gG~l~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~~~~~~~v 299 (305)
T 3ocj_A 220 GGALVTSFLTPPPALSPDSPWDMQAIDPHDLQLQQLVFTRLIQPRWNALRTHAQTRAQLEEAGFTDLRFEDDRARLFPTV 299 (305)
T ss_dssp EEEEEEECCCCCTTTCTTCCCCGGGSCHHHHHHHHHHHHHTTCCSCCCCCCHHHHHHHHHHTTCEEEEEECCTTSSSCEE
T ss_pred CeEEEEEecCCCCcccccccceeeccccchhhhhhhHHHHHHhhhhhccCCHHHHHHHHHHCCCEEEEEEcccCceeeEE
Confidence 999998762 348899999999999999998777777788
Q ss_pred eeecC
Q psy1420 237 SGFKL 241 (241)
Q Consensus 237 ~~~~~ 241 (241)
+++||
T Consensus 300 ~a~Kp 304 (305)
T 3ocj_A 300 IARKP 304 (305)
T ss_dssp EEECC
T ss_pred EEecC
Confidence 88887
No 29
>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42
Probab=99.74 E-value=1.9e-17 Score=140.58 Aligned_cols=130 Identities=18% Similarity=0.216 Sum_probs=107.1
Q ss_pred CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCC
Q psy1420 42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP 121 (241)
Q Consensus 42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~ 121 (241)
.++.+|||+|||+|..+ ..++. .....++++|+++.+++.++++..
T Consensus 78 ~~~~~vLDiGcG~G~~~-------------~~l~~------------------~~~~~v~~vD~s~~~~~~a~~~~~--- 123 (241)
T 2ex4_A 78 TGTSCALDCGAGIGRIT-------------KRLLL------------------PLFREVDMVDITEDFLVQAKTYLG--- 123 (241)
T ss_dssp CCCSEEEEETCTTTHHH-------------HHTTT------------------TTCSEEEEEESCHHHHHHHHHHTG---
T ss_pred CCCCEEEEECCCCCHHH-------------HHHHH------------------hcCCEEEEEeCCHHHHHHHHHHhh---
Confidence 36789999999999988 43333 123479999999999999998876
Q ss_pred CccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHH--HHHHHHHHhccCCc
Q psy1420 122 IESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRID--KALSEAYRVLKPGG 199 (241)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~--~~l~~~~~~LkpgG 199 (241)
..+. .++++...|+..++.+.++||+|++..++++++++. .+++++.++|||||
T Consensus 124 ----------------------~~~~--~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG 179 (241)
T 2ex4_A 124 ----------------------EEGK--RVRNYFCCGLQDFTPEPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNG 179 (241)
T ss_dssp ----------------------GGGG--GEEEEEECCGGGCCCCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEE
T ss_pred ----------------------hcCC--ceEEEEEcChhhcCCCCCCEEEEEEcchhhhCCHHHHHHHHHHHHHhcCCCe
Confidence 2211 257889999988887777899999999999998854 99999999999999
Q ss_pred EEEEEec-----------------CHHHHHHHHHHCCCceEEEEEec
Q psy1420 200 RFLCLEF-----------------SHEEFKSMIESAGFQYVTYENLT 229 (241)
Q Consensus 200 ~l~i~~~-----------------~~~~~~~~l~~~Gf~~~~~~~~~ 229 (241)
++++.+. +.+++.++++++||++++.....
T Consensus 180 ~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~ 226 (241)
T 2ex4_A 180 IIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSAGLSLLAEERQE 226 (241)
T ss_dssp EEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHHHTTCCEEEEEECC
T ss_pred EEEEEEccCCCcceecccCCcccCCHHHHHHHHHHcCCeEEEeeecC
Confidence 9999663 34899999999999999987663
No 30
>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21
Probab=99.74 E-value=1.9e-17 Score=141.12 Aligned_cols=139 Identities=16% Similarity=0.126 Sum_probs=116.0
Q ss_pred HHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhH
Q psy1420 31 WKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRL 110 (241)
Q Consensus 31 ~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~ 110 (241)
..+.+++.+...++.+|||+|||+|..+ ..++. . ....++++|+++.++
T Consensus 24 ~~~~l~~~~~~~~~~~VLDiGcG~G~~~-------------~~la~----~--------------~~~~v~gvD~s~~~l 72 (256)
T 1nkv_A 24 KYATLGRVLRMKPGTRILDLGSGSGEML-------------CTWAR----D--------------HGITGTGIDMSSLFT 72 (256)
T ss_dssp HHHHHHHHTCCCTTCEEEEETCTTCHHH-------------HHHHH----H--------------TCCEEEEEESCHHHH
T ss_pred HHHHHHHhcCCCCCCEEEEECCCCCHHH-------------HHHHH----h--------------cCCeEEEEeCCHHHH
Confidence 4566677777888999999999999988 44444 1 234789999999999
Q ss_pred HHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHHH
Q psy1420 111 RFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSE 190 (241)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~ 190 (241)
+.+++++. ..++. +++++.++|+..++. +++||+|++..++++++++..++++
T Consensus 73 ~~a~~~~~-------------------------~~~~~-~~v~~~~~d~~~~~~-~~~fD~V~~~~~~~~~~~~~~~l~~ 125 (256)
T 1nkv_A 73 AQAKRRAE-------------------------ELGVS-ERVHFIHNDAAGYVA-NEKCDVAACVGATWIAGGFAGAEEL 125 (256)
T ss_dssp HHHHHHHH-------------------------HTTCT-TTEEEEESCCTTCCC-SSCEEEEEEESCGGGTSSSHHHHHH
T ss_pred HHHHHHHH-------------------------hcCCC-cceEEEECChHhCCc-CCCCCEEEECCChHhcCCHHHHHHH
Confidence 99999887 55554 479999999998876 6789999999999999999999999
Q ss_pred HHHhccCCcEEEEEec------------------------CHHHHHHHHHHCCCceEEEEE
Q psy1420 191 AYRVLKPGGRFLCLEF------------------------SHEEFKSMIESAGFQYVTYEN 227 (241)
Q Consensus 191 ~~~~LkpgG~l~i~~~------------------------~~~~~~~~l~~~Gf~~~~~~~ 227 (241)
++++|||||++++.+. +..++.++++++||..++...
T Consensus 126 ~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~ 186 (256)
T 1nkv_A 126 LAQSLKPGGIMLIGEPYWRQLPATEEIAQACGVSSTSDFLTLPGLVGAFDDLGYDVVEMVL 186 (256)
T ss_dssp HTTSEEEEEEEEEEEEEETTCCSSHHHHHTTTCSCGGGSCCHHHHHHHHHTTTBCCCEEEE
T ss_pred HHHHcCCCeEEEEecCcccCCCChHHHHHHHhcccccccCCHHHHHHHHHHCCCeeEEEEe
Confidence 9999999999998752 127889999999999887654
No 31
>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*
Probab=99.74 E-value=2e-17 Score=143.75 Aligned_cols=138 Identities=17% Similarity=0.189 Sum_probs=113.8
Q ss_pred HHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHH
Q psy1420 32 KDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLR 111 (241)
Q Consensus 32 ~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~ 111 (241)
.+.+++.+...++.+|||+|||+|..+ ..++. ....+++++|+|+.+++
T Consensus 53 ~~~~~~~~~~~~~~~vLDiGcG~G~~~-------------~~l~~------------------~~~~~v~gvd~s~~~~~ 101 (287)
T 1kpg_A 53 IDLALGKLGLQPGMTLLDVGCGWGATM-------------MRAVE------------------KYDVNVVGLTLSKNQAN 101 (287)
T ss_dssp HHHHHTTTTCCTTCEEEEETCTTSHHH-------------HHHHH------------------HHCCEEEEEESCHHHHH
T ss_pred HHHHHHHcCCCCcCEEEEECCcccHHH-------------HHHHH------------------HcCCEEEEEECCHHHHH
Confidence 455667777788899999999999988 44442 12458999999999999
Q ss_pred HHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhcc--ccHHHHHH
Q psy1420 112 FLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNV--TRIDKALS 189 (241)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~--~~~~~~l~ 189 (241)
.+++++. ..+.. +++++..+|+..+| ++||+|++..+++++ +++..+++
T Consensus 102 ~a~~~~~-------------------------~~~~~-~~~~~~~~d~~~~~---~~fD~v~~~~~l~~~~~~~~~~~l~ 152 (287)
T 1kpg_A 102 HVQQLVA-------------------------NSENL-RSKRVLLAGWEQFD---EPVDRIVSIGAFEHFGHERYDAFFS 152 (287)
T ss_dssp HHHHHHH-------------------------TCCCC-SCEEEEESCGGGCC---CCCSEEEEESCGGGTCTTTHHHHHH
T ss_pred HHHHHHH-------------------------hcCCC-CCeEEEECChhhCC---CCeeEEEEeCchhhcChHHHHHHHH
Confidence 9999887 44544 47899999998775 789999999999999 67899999
Q ss_pred HHHHhccCCcEEEEEec-------------------------------------CHHHHHHHHHHCCCceEEEEEec
Q psy1420 190 EAYRVLKPGGRFLCLEF-------------------------------------SHEEFKSMIESAGFQYVTYENLT 229 (241)
Q Consensus 190 ~~~~~LkpgG~l~i~~~-------------------------------------~~~~~~~~l~~~Gf~~~~~~~~~ 229 (241)
++.++|||||++++.+. +.+++.++++++||++++.....
T Consensus 153 ~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~aGf~~~~~~~~~ 229 (287)
T 1kpg_A 153 LAHRLLPADGVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIFPGGRLPSIPMVQECASANGFTVTRVQSLQ 229 (287)
T ss_dssp HHHHHSCTTCEEEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHHTSTTCCCCCHHHHHHHHHTTTCEEEEEEECH
T ss_pred HHHHhcCCCCEEEEEEecCCCccccccccccccccccchhhhHHheeCCCCCCCCHHHHHHHHHhCCcEEEEEEeCc
Confidence 99999999999998652 23788899999999999887653
No 32
>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}
Probab=99.74 E-value=2.4e-17 Score=142.37 Aligned_cols=142 Identities=23% Similarity=0.346 Sum_probs=116.9
Q ss_pred HHHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHh
Q psy1420 30 LWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPR 109 (241)
Q Consensus 30 ~~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~ 109 (241)
.+.+.+.......++.+|||+|||+|.++ ..+.. . .+...++++|+++.+
T Consensus 24 ~l~~~l~~~~~~~~~~~vLDiG~G~G~~~-------------~~l~~----~-------------~~~~~v~~vD~s~~~ 73 (276)
T 3mgg_A 24 TLEKLLHHDTVYPPGAKVLEAGCGIGAQT-------------VILAK----N-------------NPDAEITSIDISPES 73 (276)
T ss_dssp HHHHHHHTTCCCCTTCEEEETTCTTSHHH-------------HHHHH----H-------------CTTSEEEEEESCHHH
T ss_pred HHHHHHhhcccCCCCCeEEEecCCCCHHH-------------HHHHH----h-------------CCCCEEEEEECCHHH
Confidence 34445555555678889999999999988 43333 1 025689999999999
Q ss_pred HHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHH
Q psy1420 110 LRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALS 189 (241)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~ 189 (241)
++.+++++. ..+++ ++++...|+..++.+.++||+|++..++++++++..+++
T Consensus 74 ~~~a~~~~~-------------------------~~~~~--~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~ 126 (276)
T 3mgg_A 74 LEKARENTE-------------------------KNGIK--NVKFLQANIFSLPFEDSSFDHIFVCFVLEHLQSPEEALK 126 (276)
T ss_dssp HHHHHHHHH-------------------------HTTCC--SEEEEECCGGGCCSCTTCEEEEEEESCGGGCSCHHHHHH
T ss_pred HHHHHHHHH-------------------------HcCCC--CcEEEEcccccCCCCCCCeeEEEEechhhhcCCHHHHHH
Confidence 999999887 44444 689999999998888889999999999999999999999
Q ss_pred HHHHhccCCcEEEEEecCH---------------------------------HHHHHHHHHCCCceEEEEEe
Q psy1420 190 EAYRVLKPGGRFLCLEFSH---------------------------------EEFKSMIESAGFQYVTYENL 228 (241)
Q Consensus 190 ~~~~~LkpgG~l~i~~~~~---------------------------------~~~~~~l~~~Gf~~~~~~~~ 228 (241)
++.++|||||++++.+... +++.++++++||++++.+..
T Consensus 127 ~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~v~~~~~ 198 (276)
T 3mgg_A 127 SLKKVLKPGGTITVIEGDHGSCYFHPEGKKAIEAWNCLIRVQAYMKGNSLVGRQIYPLLQESGFEKIRVEPR 198 (276)
T ss_dssp HHHHHEEEEEEEEEEEECGGGCEEESCCHHHHHHHHHHHHHHHHTTCCTTGGGGHHHHHHHTTCEEEEEEEE
T ss_pred HHHHHcCCCcEEEEEEcCCCCceECCCcHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHCCCCeEEEeeE
Confidence 9999999999999976321 67888999999999988865
No 33
>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A
Probab=99.74 E-value=2.2e-17 Score=150.54 Aligned_cols=133 Identities=20% Similarity=0.257 Sum_probs=108.2
Q ss_pred CCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcC
Q psy1420 41 PTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEEL 120 (241)
Q Consensus 41 ~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~ 120 (241)
..++.+|||+|||+|.++ ..++..++ ...+++++|+++.+++.+++++.
T Consensus 81 ~~~~~~VLDlGcG~G~~~-------------~~la~~~~----------------~~~~v~gvD~s~~~l~~a~~~~~-- 129 (383)
T 4fsd_A 81 SLEGATVLDLGCGTGRDV-------------YLASKLVG----------------EHGKVIGVDMLDNQLEVARKYVE-- 129 (383)
T ss_dssp GGTTCEEEEESCTTSHHH-------------HHHHHHHT----------------TTCEEEEEECCHHHHHHHHHTHH--
T ss_pred CCCCCEEEEecCccCHHH-------------HHHHHHhC----------------CCCEEEEEECCHHHHHHHHHHHH--
Confidence 357789999999999988 44433111 24589999999999999998865
Q ss_pred CCccccccccceecceeeeeecccc-----C-CCCCCeeEEecccCCC------CCCCCceeEEeeeehhhccccHHHHH
Q psy1420 121 PIESDSYSAYTIAFGIRNVTRIDKI-----D-IPNPRLRFLEANAEEL------PIESDSYSAYTIAFGIRNVTRIDKAL 188 (241)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~-~~~~~~~~~~~d~~~~------~~~~~~~D~V~~~~~l~~~~~~~~~l 188 (241)
.. + ...++++++.+|+..+ ++++++||+|+++.++++++++..++
T Consensus 130 -----------------------~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~~~~~~fD~V~~~~~l~~~~d~~~~l 186 (383)
T 4fsd_A 130 -----------------------YHAEKFFGSPSRSNVRFLKGFIENLATAEPEGVPDSSVDIVISNCVCNLSTNKLALF 186 (383)
T ss_dssp -----------------------HHHHHHHSSTTCCCEEEEESCTTCGGGCBSCCCCTTCEEEEEEESCGGGCSCHHHHH
T ss_pred -----------------------HhhhhcccccCCCceEEEEccHHHhhhcccCCCCCCCEEEEEEccchhcCCCHHHHH
Confidence 22 2 2224799999999887 77788999999999999999999999
Q ss_pred HHHHHhccCCcEEEEEec-------------------------CHHHHHHHHHHCCCceEEEEE
Q psy1420 189 SEAYRVLKPGGRFLCLEF-------------------------SHEEFKSMIESAGFQYVTYEN 227 (241)
Q Consensus 189 ~~~~~~LkpgG~l~i~~~-------------------------~~~~~~~~l~~~Gf~~~~~~~ 227 (241)
++++++|||||+|++.+. ..+++.++++++||..+++..
T Consensus 187 ~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v~~~~ 250 (383)
T 4fsd_A 187 KEIHRVLRDGGELYFSDVYADRRLSEAAQQDPILYGECLGGALYLEDFRRLVAEAGFRDVRLVS 250 (383)
T ss_dssp HHHHHHEEEEEEEEEEEEEESSCCCHHHHHCHHHHHTTCTTCCBHHHHHHHHHHTTCCCEEEEE
T ss_pred HHHHHHcCCCCEEEEEEeccccccCHhHhhhHHHhhcccccCCCHHHHHHHHHHCCCceEEEEe
Confidence 999999999999999762 228899999999998776544
No 34
>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*
Probab=99.74 E-value=1.7e-17 Score=141.63 Aligned_cols=138 Identities=15% Similarity=0.283 Sum_probs=116.8
Q ss_pred HHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHH
Q psy1420 32 KDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLR 111 (241)
Q Consensus 32 ~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~ 111 (241)
.+.+++.+...++.+|||+|||+|..+ ..++. ....+++++|+++.+++
T Consensus 44 ~~~~~~~~~~~~~~~vLdiG~G~G~~~-------------~~l~~------------------~~~~~v~~vD~s~~~~~ 92 (266)
T 3ujc_A 44 TKKILSDIELNENSKVLDIGSGLGGGC-------------MYINE------------------KYGAHTHGIDICSNIVN 92 (266)
T ss_dssp HHHHTTTCCCCTTCEEEEETCTTSHHH-------------HHHHH------------------HHCCEEEEEESCHHHHH
T ss_pred HHHHHHhcCCCCCCEEEEECCCCCHHH-------------HHHHH------------------HcCCEEEEEeCCHHHHH
Confidence 456677777788899999999999988 44444 12458999999999999
Q ss_pred HHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhcc--ccHHHHHH
Q psy1420 112 FLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNV--TRIDKALS 189 (241)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~--~~~~~~l~ 189 (241)
.++++.. .. +++++..+|+..++.+.++||+|++..+++++ +++..+++
T Consensus 93 ~a~~~~~-------------------------~~----~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~ 143 (266)
T 3ujc_A 93 MANERVS-------------------------GN----NKIIFEANDILTKEFPENNFDLIYSRDAILALSLENKNKLFQ 143 (266)
T ss_dssp HHHHTCC-------------------------SC----TTEEEEECCTTTCCCCTTCEEEEEEESCGGGSCHHHHHHHHH
T ss_pred HHHHHhh-------------------------cC----CCeEEEECccccCCCCCCcEEEEeHHHHHHhcChHHHHHHHH
Confidence 9998765 21 36899999999988888899999999999999 88999999
Q ss_pred HHHHhccCCcEEEEEec------------------------CHHHHHHHHHHCCCceEEEEEec
Q psy1420 190 EAYRVLKPGGRFLCLEF------------------------SHEEFKSMIESAGFQYVTYENLT 229 (241)
Q Consensus 190 ~~~~~LkpgG~l~i~~~------------------------~~~~~~~~l~~~Gf~~~~~~~~~ 229 (241)
++.++|||||++++.++ +.+++.++++++||++++.....
T Consensus 144 ~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~ 207 (266)
T 3ujc_A 144 KCYKWLKPTGTLLITDYCATEKENWDDEFKEYVKQRKYTLITVEEYADILTACNFKNVVSKDLS 207 (266)
T ss_dssp HHHHHEEEEEEEEEEEEEESCGGGCCHHHHHHHHHHTCCCCCHHHHHHHHHHTTCEEEEEEECH
T ss_pred HHHHHcCCCCEEEEEEeccCCcccchHHHHHHHhcCCCCCCCHHHHHHHHHHcCCeEEEEEeCC
Confidence 99999999999999763 22889999999999999888764
No 35
>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*
Probab=99.72 E-value=5.3e-17 Score=140.92 Aligned_cols=131 Identities=15% Similarity=0.168 Sum_probs=106.2
Q ss_pred CCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcC
Q psy1420 41 PTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEEL 120 (241)
Q Consensus 41 ~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~ 120 (241)
..++.+|||+|||+|..+ ..+.. .....++++|+++.+++.++++..
T Consensus 62 ~~~~~~vLDiGcG~G~~~-------------~~l~~------------------~~~~~v~gvD~s~~~~~~a~~~~~-- 108 (298)
T 1ri5_A 62 TKRGDSVLDLGCGKGGDL-------------LKYER------------------AGIGEYYGVDIAEVSINDARVRAR-- 108 (298)
T ss_dssp CCTTCEEEEETCTTTTTH-------------HHHHH------------------HTCSEEEEEESCHHHHHHHHHHHH--
T ss_pred CCCCCeEEEECCCCCHHH-------------HHHHH------------------CCCCEEEEEECCHHHHHHHHHHHH--
Confidence 357789999999999988 33332 123479999999999999999887
Q ss_pred CCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCC-CCCceeEEeeeehhhc----cccHHHHHHHHHHhc
Q psy1420 121 PIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPI-ESDSYSAYTIAFGIRN----VTRIDKALSEAYRVL 195 (241)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~D~V~~~~~l~~----~~~~~~~l~~~~~~L 195 (241)
..+.. .++.+.++|+...+. +.++||+|++..++++ ..++..+++++.++|
T Consensus 109 -----------------------~~~~~-~~v~~~~~d~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~L 164 (298)
T 1ri5_A 109 -----------------------NMKRR-FKVFFRAQDSYGRHMDLGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHL 164 (298)
T ss_dssp -----------------------TSCCS-SEEEEEESCTTTSCCCCSSCEEEEEEESCGGGGGSSHHHHHHHHHHHHHTE
T ss_pred -----------------------hcCCC-ccEEEEECCccccccCCCCCcCEEEECchhhhhcCCHHHHHHHHHHHHHhc
Confidence 44433 468999999998877 5679999999999876 567789999999999
Q ss_pred cCCcEEEEEecC-----------------------------------------------------HHHHHHHHHHCCCce
Q psy1420 196 KPGGRFLCLEFS-----------------------------------------------------HEEFKSMIESAGFQY 222 (241)
Q Consensus 196 kpgG~l~i~~~~-----------------------------------------------------~~~~~~~l~~~Gf~~ 222 (241)
||||++++.... .++++++++++||++
T Consensus 165 kpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~l~~ll~~aGf~~ 244 (298)
T 1ri5_A 165 RPGGYFIMTVPSRDVILERYKQGRMSNDFYKIELEKMEDVPMESVREYRFTLLDSVNNCIEYFVDFTRMVDGFKRLGLSL 244 (298)
T ss_dssp EEEEEEEEEEECHHHHHHHHHHTCCBCSSEEEECCCCSSCCTTTCCEEEEEETTSCSSEEEECCCHHHHHHHHHTTTEEE
T ss_pred CCCCEEEEEECCHHHHHHHHccCccCCeeEEEEeCccccccccccceEEEEEchhhcCCcccccCHHHHHHHHHHcCCEE
Confidence 999999976432 278899999999999
Q ss_pred EEEEEe
Q psy1420 223 VTYENL 228 (241)
Q Consensus 223 ~~~~~~ 228 (241)
++...+
T Consensus 245 v~~~~~ 250 (298)
T 1ri5_A 245 VERKGF 250 (298)
T ss_dssp EEEEEH
T ss_pred EEecCH
Confidence 888765
No 36
>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}
Probab=99.72 E-value=3.4e-17 Score=137.81 Aligned_cols=167 Identities=17% Similarity=0.217 Sum_probs=119.9
Q ss_pred HHHh-hhhhccccchhhhh---hhhHHHHHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhh
Q psy1420 7 EVFE-NVAKSYDTMNDAMS---FGIHRLWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLI 82 (241)
Q Consensus 7 ~~f~-~~~~~yd~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (241)
++|+ .++..|+.+..... ....+.+.+.+.... .++.+|||+|||+|..+ ..++.
T Consensus 2 ~~y~~~~a~~yd~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~vLdiG~G~G~~~-------------~~l~~------ 60 (239)
T 3bxo_A 2 HMYEVDHADVYDLFYLGRGKDYAAEASDIADLVRSRT--PEASSLLDVACGTGTHL-------------EHFTK------ 60 (239)
T ss_dssp --CCCCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHC--TTCCEEEEETCTTSHHH-------------HHHHH------
T ss_pred ccccchhHHHHHHHhhccHhhHHHHHHHHHHHHHHhc--CCCCeEEEecccCCHHH-------------HHHHH------
Confidence 4566 67777776532211 111122333344333 46779999999999988 44443
Q ss_pred hcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCC
Q psy1420 83 AGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL 162 (241)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 162 (241)
....++++|+++.+++.++++.. ++++..+|+...
T Consensus 61 -------------~~~~v~~~D~s~~~~~~a~~~~~--------------------------------~~~~~~~d~~~~ 95 (239)
T 3bxo_A 61 -------------EFGDTAGLELSEDMLTHARKRLP--------------------------------DATLHQGDMRDF 95 (239)
T ss_dssp -------------HHSEEEEEESCHHHHHHHHHHCT--------------------------------TCEEEECCTTTC
T ss_pred -------------hCCcEEEEeCCHHHHHHHHHhCC--------------------------------CCEEEECCHHHc
Confidence 22379999999999999987643 478899999888
Q ss_pred CCCCCceeEEeeee-hhhcc---ccHHHHHHHHHHhccCCcEEEEEe---------------------------------
Q psy1420 163 PIESDSYSAYTIAF-GIRNV---TRIDKALSEAYRVLKPGGRFLCLE--------------------------------- 205 (241)
Q Consensus 163 ~~~~~~~D~V~~~~-~l~~~---~~~~~~l~~~~~~LkpgG~l~i~~--------------------------------- 205 (241)
+. .++||+|+|.. +++++ .+...+++++.++|||||++++.+
T Consensus 96 ~~-~~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (239)
T 3bxo_A 96 RL-GRKFSAVVSMFSSVGYLKTTEELGAAVASFAEHLEPGGVVVVEPWWFPETFADGWVSADVVRRDGRTVARVSHSVRE 174 (239)
T ss_dssp CC-SSCEEEEEECTTGGGGCCSHHHHHHHHHHHHHTEEEEEEEEECCCCCTTTCCTTCEEEEEEEETTEEEEEEEEEEEE
T ss_pred cc-CCCCcEEEEcCchHhhcCCHHHHHHHHHHHHHhcCCCeEEEEEeccCcccccccceEeeEEecCCceEEEEEEEecC
Confidence 76 67899999655 88887 456799999999999999998852
Q ss_pred ------------------------------cCHHHHHHHHHHCCCceEEEEEecCceeEEEeeecC
Q psy1420 206 ------------------------------FSHEEFKSMIESAGFQYVTYENLTFGVVAIHSGFKL 241 (241)
Q Consensus 206 ------------------------------~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~~~ 241 (241)
++.+++.++++++||+++.+. ...+...+++|+||
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~ll~~aGF~v~~~~-~~~~~~~~~va~K~ 239 (239)
T 3bxo_A 175 GNATRMEVHFTVADPGKGVRHFSDVHLITLFHQAEYEAAFTAAGLRVEYLE-GGPSGRGLFVGVPA 239 (239)
T ss_dssp TTEEEEEEEEEEEETTTEEEEEEEEEEEECCCHHHHHHHHHHTTEEEEEES-STTTSSCEEEEEEC
T ss_pred CCEEEEEEEEEEecCCCcceEEEEEEEeeecCHHHHHHHHHHCCCEEEEeE-cCCCCceEEEEecC
Confidence 123899999999999766554 34566788899887
No 37
>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}
Probab=99.72 E-value=1.3e-16 Score=134.46 Aligned_cols=167 Identities=17% Similarity=0.289 Sum_probs=124.1
Q ss_pred HHhhhhhccccchhhhhhhhHHHHHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCC
Q psy1420 8 VFENVAKSYDTMNDAMSFGIHRLWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWK 87 (241)
Q Consensus 8 ~f~~~~~~yd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (241)
.|+.++..|+..... .....+.+.+.+.+. ++.+|||+|||+|..+ ..++.
T Consensus 3 ~y~~~a~~yd~~~~~---~~~~~~~~~~~~~~~--~~~~vLdiG~G~G~~~-------------~~l~~----------- 53 (243)
T 3d2l_A 3 AYEQFAYVYDELMQD---VPYPEWVAWVLEQVE--PGKRIADIGCGTGTAT-------------LLLAD----------- 53 (243)
T ss_dssp ---CTTHHHHHHTTT---CCHHHHHHHHHHHSC--TTCEEEEESCTTCHHH-------------HHHTT-----------
T ss_pred hHHHHHHHHHHhhhc---ccHHHHHHHHHHHcC--CCCeEEEecCCCCHHH-------------HHHhh-----------
Confidence 588888888885322 223345566666654 4579999999999988 44443
Q ss_pred cchhhhcccCCCceeecCChHhHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCC
Q psy1420 88 PYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESD 167 (241)
Q Consensus 88 ~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 167 (241)
. ..++++|+++.+++.++++.. ..+ .++++..+|+...+.+ +
T Consensus 54 --------~-~~v~~vD~s~~~~~~a~~~~~-------------------------~~~---~~~~~~~~d~~~~~~~-~ 95 (243)
T 3d2l_A 54 --------H-YEVTGVDLSEEMLEIAQEKAM-------------------------ETN---RHVDFWVQDMRELELP-E 95 (243)
T ss_dssp --------T-SEEEEEESCHHHHHHHHHHHH-------------------------HTT---CCCEEEECCGGGCCCS-S
T ss_pred --------C-CeEEEEECCHHHHHHHHHhhh-------------------------hcC---CceEEEEcChhhcCCC-C
Confidence 2 579999999999999998876 333 2588999999888765 7
Q ss_pred ceeEEeeee-hhhcc---ccHHHHHHHHHHhccCCcEEEEEe--------------------------------------
Q psy1420 168 SYSAYTIAF-GIRNV---TRIDKALSEAYRVLKPGGRFLCLE-------------------------------------- 205 (241)
Q Consensus 168 ~~D~V~~~~-~l~~~---~~~~~~l~~~~~~LkpgG~l~i~~-------------------------------------- 205 (241)
+||+|++.. +++++ .++..+++++.++|||||++++..
T Consensus 96 ~fD~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (243)
T 3d2l_A 96 PVDAITILCDSLNYLQTEADVKQTFDSAARLLTDGGKLLFDVHSPYKMETLFNGKTYATHAEQSSYIWFADPGEEPLSVV 175 (243)
T ss_dssp CEEEEEECTTGGGGCCSHHHHHHHHHHHHHHEEEEEEEEEEEECHHHHHTTTSSEEEEEECSSEEEEEEEEECSSTTEEE
T ss_pred CcCEEEEeCCchhhcCCHHHHHHHHHHHHHhcCCCeEEEEEcCCHHHHHHhcCCcceeEECCCcEEEEEeecCccccEEE
Confidence 899999986 88887 566789999999999999988721
Q ss_pred -------------------------cCHHHHHHHHHHCCCceEEEEEec-------CceeEEEeeecC
Q psy1420 206 -------------------------FSHEEFKSMIESAGFQYVTYENLT-------FGVVAIHSGFKL 241 (241)
Q Consensus 206 -------------------------~~~~~~~~~l~~~Gf~~~~~~~~~-------~~~~~~~~~~~~ 241 (241)
++.+++.++++++||+++++.... ....-+++++||
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~~~~~~~~~~~~~~~~va~K~ 243 (243)
T 3d2l_A 176 HELTFFIEGEDGRYDRVDETHHQRTYPPEQYITWLREAGFRVCAVTGDFKSDAPTETAERIFFVAEKI 243 (243)
T ss_dssp EEEEEEEECTTSCEEEEEEEEEEECCCHHHHHHHHHHTTEEEEEEEETTSSSCCCTTCSEEEEEEEEC
T ss_pred EEEEEEEEcCCCceEEEEEEEeEecCCHHHHHHHHHHCCCeEEEEecCcccCCCCCCceEEEEEEEeC
Confidence 234899999999999998886431 123446778876
No 38
>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}
Probab=99.71 E-value=8.5e-17 Score=134.61 Aligned_cols=131 Identities=21% Similarity=0.359 Sum_probs=110.0
Q ss_pred CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCC
Q psy1420 42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP 121 (241)
Q Consensus 42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~ 121 (241)
+++.+|||+|||+|..+ ..++. ...+++++|+++.+++.++++..
T Consensus 29 ~~~~~vLdiG~G~G~~~-------------~~l~~-------------------~~~~v~~vD~s~~~~~~a~~~~~--- 73 (235)
T 3sm3_A 29 QEDDEILDIGCGSGKIS-------------LELAS-------------------KGYSVTGIDINSEAIRLAETAAR--- 73 (235)
T ss_dssp CTTCEEEEETCTTSHHH-------------HHHHH-------------------TTCEEEEEESCHHHHHHHHHHTT---
T ss_pred CCCCeEEEECCCCCHHH-------------HHHHh-------------------CCCeEEEEECCHHHHHHHHHHHH---
Confidence 46779999999999988 44444 24579999999999999998877
Q ss_pred CccccccccceecceeeeeeccccCCC---CCCeeEEecccCCCCCCCCceeEEeeeehhhccccHH---HHHHHHHHhc
Q psy1420 122 IESDSYSAYTIAFGIRNVTRIDKIDIP---NPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRID---KALSEAYRVL 195 (241)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~---~~l~~~~~~L 195 (241)
..++. ..++.+...|+..++.+.++||+|++..++++++++. .+++++.++|
T Consensus 74 ----------------------~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~~~~~~~~~~~~l~~~~~~L 131 (235)
T 3sm3_A 74 ----------------------SPGLNQKTGGKAEFKVENASSLSFHDSSFDFAVMQAFLTSVPDPKERSRIIKEVFRVL 131 (235)
T ss_dssp ----------------------CCSCCSSSSCEEEEEECCTTSCCSCTTCEEEEEEESCGGGCCCHHHHHHHHHHHHHHE
T ss_pred ----------------------hcCCccccCcceEEEEecccccCCCCCceeEEEEcchhhcCCCHHHHHHHHHHHHHHc
Confidence 33321 1368899999999888788999999999999999888 9999999999
Q ss_pred cCCcEEEEEec-------------------------------------------CHHHHHHHHHHCCCceEEEEEec
Q psy1420 196 KPGGRFLCLEF-------------------------------------------SHEEFKSMIESAGFQYVTYENLT 229 (241)
Q Consensus 196 kpgG~l~i~~~-------------------------------------------~~~~~~~~l~~~Gf~~~~~~~~~ 229 (241)
||||++++.++ +.+++.++++++||+++++....
T Consensus 132 ~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aGf~~~~~~~~~ 208 (235)
T 3sm3_A 132 KPGAYLYLVEFGQNWHLKLYRKRYLHDFPITKEEGSFLARDPETGETEFIAHHFTEKELVFLLTDCRFEIDYFRVKE 208 (235)
T ss_dssp EEEEEEEEEEEBCCTTSHHHHHHHHHHHHHHCSTTEEEEECTTTCCEEEEEECBCHHHHHHHHHTTTEEEEEEEEEE
T ss_pred CCCeEEEEEECCcchhHHHHHHHhhhhccchhhhcceEecccccCCcceeeEeCCHHHHHHHHHHcCCEEEEEEecc
Confidence 99999998753 34899999999999999887653
No 39
>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}
Probab=99.71 E-value=2.9e-17 Score=131.81 Aligned_cols=130 Identities=15% Similarity=0.149 Sum_probs=106.0
Q ss_pred HhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHH
Q psy1420 36 IDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEA 115 (241)
Q Consensus 36 ~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~ 115 (241)
++.+...++.+|||+|||+|..+ ..+.. ....++++|+++.+++.+++
T Consensus 10 ~~~~~~~~~~~vLDiG~G~G~~~-------------~~l~~-------------------~~~~v~~vD~s~~~~~~a~~ 57 (170)
T 3i9f_A 10 LPNIFEGKKGVIVDYGCGNGFYC-------------KYLLE-------------------FATKLYCIDINVIALKEVKE 57 (170)
T ss_dssp HHHHHSSCCEEEEEETCTTCTTH-------------HHHHT-------------------TEEEEEEECSCHHHHHHHHH
T ss_pred HHhcCcCCCCeEEEECCCCCHHH-------------HHHHh-------------------hcCeEEEEeCCHHHHHHHHH
Confidence 33445567889999999999988 44443 12379999999999999887
Q ss_pred HHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHHHHHHhc
Q psy1420 116 NAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVL 195 (241)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~L 195 (241)
+. +++++...| .+.+.++||+|++..++++++++..+++++.++|
T Consensus 58 ~~--------------------------------~~v~~~~~d---~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L 102 (170)
T 3i9f_A 58 KF--------------------------------DSVITLSDP---KEIPDNSVDFILFANSFHDMDDKQHVISEVKRIL 102 (170)
T ss_dssp HC--------------------------------TTSEEESSG---GGSCTTCEEEEEEESCSTTCSCHHHHHHHHHHHE
T ss_pred hC--------------------------------CCcEEEeCC---CCCCCCceEEEEEccchhcccCHHHHHHHHHHhc
Confidence 62 367888888 5566789999999999999999999999999999
Q ss_pred cCCcEEEEEecCH---------------HHHHHHHHHCCCceEEEEEecCceeE
Q psy1420 196 KPGGRFLCLEFSH---------------EEFKSMIESAGFQYVTYENLTFGVVA 234 (241)
Q Consensus 196 kpgG~l~i~~~~~---------------~~~~~~l~~~Gf~~~~~~~~~~~~~~ 234 (241)
||||++++.++.. +++.++++ ||++++..........
T Consensus 103 ~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--Gf~~~~~~~~~~~~~~ 154 (170)
T 3i9f_A 103 KDDGRVIIIDWRKENTGIGPPLSIRMDEKDYMGWFS--NFVVEKRFNPTPYHFG 154 (170)
T ss_dssp EEEEEEEEEEECSSCCSSSSCGGGCCCHHHHHHHTT--TEEEEEEECSSTTEEE
T ss_pred CCCCEEEEEEcCccccccCchHhhhcCHHHHHHHHh--CcEEEEccCCCCceEE
Confidence 9999999987543 78999998 9999998887643333
No 40
>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}
Probab=99.71 E-value=3.8e-17 Score=138.03 Aligned_cols=128 Identities=14% Similarity=0.163 Sum_probs=106.3
Q ss_pred CCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCC
Q psy1420 43 HDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPI 122 (241)
Q Consensus 43 ~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~ 122 (241)
++.+|||+|||+|..+ ..++. ....++++|+++.+++.++++..
T Consensus 66 ~~~~vLDiGcG~G~~~-------------~~l~~-------------------~~~~v~gvD~s~~~~~~a~~~~~---- 109 (235)
T 3lcc_A 66 PLGRALVPGCGGGHDV-------------VAMAS-------------------PERFVVGLDISESALAKANETYG---- 109 (235)
T ss_dssp CCEEEEEETCTTCHHH-------------HHHCB-------------------TTEEEEEECSCHHHHHHHHHHHT----
T ss_pred CCCCEEEeCCCCCHHH-------------HHHHh-------------------CCCeEEEEECCHHHHHHHHHHhh----
Confidence 3459999999999988 33333 35679999999999999998876
Q ss_pred ccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccc--cHHHHHHHHHHhccCCcE
Q psy1420 123 ESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVT--RIDKALSEAYRVLKPGGR 200 (241)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~--~~~~~l~~~~~~LkpgG~ 200 (241)
..+.. .++++.++|+...+ +.++||+|++..++++++ ++..+++++.++|||||+
T Consensus 110 ---------------------~~~~~-~~v~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~ 166 (235)
T 3lcc_A 110 ---------------------SSPKA-EYFSFVKEDVFTWR-PTELFDLIFDYVFFCAIEPEMRPAWAKSMYELLKPDGE 166 (235)
T ss_dssp ---------------------TSGGG-GGEEEECCCTTTCC-CSSCEEEEEEESSTTTSCGGGHHHHHHHHHHHEEEEEE
T ss_pred ---------------------ccCCC-cceEEEECchhcCC-CCCCeeEEEEChhhhcCCHHHHHHHHHHHHHHCCCCcE
Confidence 22211 36899999999876 346899999999999988 889999999999999999
Q ss_pred EEEEecC-------------HHHHHHHHHHCCCceEEEEEec
Q psy1420 201 FLCLEFS-------------HEEFKSMIESAGFQYVTYENLT 229 (241)
Q Consensus 201 l~i~~~~-------------~~~~~~~l~~~Gf~~~~~~~~~ 229 (241)
+++.++. .+++.++++++||++++++...
T Consensus 167 l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~ 208 (235)
T 3lcc_A 167 LITLMYPITDHVGGPPYKVDVSTFEEVLVPIGFKAVSVEENP 208 (235)
T ss_dssp EEEEECCCSCCCSCSSCCCCHHHHHHHHGGGTEEEEEEEECT
T ss_pred EEEEEecccccCCCCCccCCHHHHHHHHHHcCCeEEEEEecC
Confidence 9987653 3899999999999999988765
No 41
>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15
Probab=99.70 E-value=2.8e-16 Score=135.90 Aligned_cols=167 Identities=16% Similarity=0.130 Sum_probs=109.2
Q ss_pred CCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhc
Q psy1420 40 GPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEE 119 (241)
Q Consensus 40 ~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~ 119 (241)
...++.+|||+|||+|..+ ...+. ....+++++|+|+.|++.+++++..
T Consensus 52 ~~~~g~~vLDiGCG~G~~~-------------~~~~~------------------~~~~~v~g~D~s~~~l~~a~~~~~~ 100 (263)
T 2a14_A 52 GGLQGDTLIDIGSGPTIYQ-------------VLAAC------------------DSFQDITLSDFTDRNREELEKWLKK 100 (263)
T ss_dssp TSCCEEEEEESSCTTCCGG-------------GTTGG------------------GTEEEEEEEESCHHHHHHHHHHHHT
T ss_pred CCCCCceEEEeCCCccHHH-------------HHHHH------------------hhhcceeeccccHHHHHHHHHHHhc
Confidence 4567889999999999876 22211 0224699999999999999988763
Q ss_pred CCCccccccccce---ecceeeeeec-c--ccCCCCCCee-EEecccCCC-CC---CCCceeEEeeeehhhcc----ccH
Q psy1420 120 LPIESDSYSAYTI---AFGIRNVTRI-D--KIDIPNPRLR-FLEANAEEL-PI---ESDSYSAYTIAFGIRNV----TRI 184 (241)
Q Consensus 120 ~~~~~~~~~~~~~---~~~~~~~~~~-~--~~~~~~~~~~-~~~~d~~~~-~~---~~~~~D~V~~~~~l~~~----~~~ 184 (241)
.+...| |-+. ..++.+-... . ..... .++. ++++|+... |. ..++||+|+++++++++ ++.
T Consensus 101 ~~~~~d---~s~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~ 176 (263)
T 2a14_A 101 EPGAYD---WTPAVKFACELEGNSGRWEEKEEKLR-AAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAY 176 (263)
T ss_dssp CTTCCC---CHHHHHHHHHHTTCGGGHHHHHHHHH-HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHH
T ss_pred CCCccc---chHHHHHHHhcCCCCcchhhHHHHHH-hhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHH
Confidence 221111 0000 0000000000 0 00000 1233 778887773 33 24689999999999985 566
Q ss_pred HHHHHHHHHhccCCcEEEEEe------------------cCHHHHHHHHHHCCCceEEEEEec---------CceeEEEe
Q psy1420 185 DKALSEAYRVLKPGGRFLCLE------------------FSHEEFKSMIESAGFQYVTYENLT---------FGVVAIHS 237 (241)
Q Consensus 185 ~~~l~~~~~~LkpgG~l~i~~------------------~~~~~~~~~l~~~Gf~~~~~~~~~---------~~~~~~~~ 237 (241)
..++++++++|||||+|++.. ++.+++.++++++||++++..... .....+++
T Consensus 177 ~~~l~~i~r~LKPGG~li~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~l~~aGF~i~~~~~~~~~~~~~~~~~~~~~~~~ 256 (263)
T 2a14_A 177 RAALCNLASLLKPGGHLVTTVTLRLPSYMVGKREFSCVALEKGEVEQAVLDAGFDIEQLLHSPQSYSVTNAANNGVCCIV 256 (263)
T ss_dssp HHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEEECCCCCHHHHHHHHHHTTEEEEEEEEECCCCCTTTCCCCCEEEEE
T ss_pred HHHHHHHHHHcCCCcEEEEEEeecCccceeCCeEeeccccCHHHHHHHHHHCCCEEEEEeecccccccccCCCCceEEEE
Confidence 799999999999999999875 244899999999999999888753 12345567
Q ss_pred eecC
Q psy1420 238 GFKL 241 (241)
Q Consensus 238 ~~~~ 241 (241)
|+|+
T Consensus 257 a~K~ 260 (263)
T 2a14_A 257 ARKK 260 (263)
T ss_dssp EEEC
T ss_pred EEec
Confidence 7764
No 42
>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}
Probab=99.70 E-value=3.6e-17 Score=141.94 Aligned_cols=133 Identities=20% Similarity=0.220 Sum_probs=110.1
Q ss_pred HHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHH
Q psy1420 32 KDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLR 111 (241)
Q Consensus 32 ~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~ 111 (241)
.+.+++.+...++.+|||+|||+|.++ ..++. ....++++|+|+.+++
T Consensus 46 ~~~l~~~l~~~~~~~vLDiGcG~G~~~-------------~~l~~-------------------~~~~v~gvD~s~~~~~ 93 (279)
T 3ccf_A 46 GEDLLQLLNPQPGEFILDLGCGTGQLT-------------EKIAQ-------------------SGAEVLGTDNAATMIE 93 (279)
T ss_dssp CCHHHHHHCCCTTCEEEEETCTTSHHH-------------HHHHH-------------------TTCEEEEEESCHHHHH
T ss_pred HHHHHHHhCCCCCCEEEEecCCCCHHH-------------HHHHh-------------------CCCeEEEEECCHHHHH
Confidence 345556666778889999999999988 44443 3568999999999999
Q ss_pred HHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHHHH
Q psy1420 112 FLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEA 191 (241)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~~ 191 (241)
.++++.. ++.+..+|+..++. +++||+|++..++++++++..+++++
T Consensus 94 ~a~~~~~--------------------------------~~~~~~~d~~~~~~-~~~fD~v~~~~~l~~~~d~~~~l~~~ 140 (279)
T 3ccf_A 94 KARQNYP--------------------------------HLHFDVADARNFRV-DKPLDAVFSNAMLHWVKEPEAAIASI 140 (279)
T ss_dssp HHHHHCT--------------------------------TSCEEECCTTTCCC-SSCEEEEEEESCGGGCSCHHHHHHHH
T ss_pred HHHhhCC--------------------------------CCEEEECChhhCCc-CCCcCEEEEcchhhhCcCHHHHHHHH
Confidence 9886643 57789999998876 57899999999999999999999999
Q ss_pred HHhccCCcEEEEEecC---------------------------------HHHHHHHHHHCCCceEEEEEec
Q psy1420 192 YRVLKPGGRFLCLEFS---------------------------------HEEFKSMIESAGFQYVTYENLT 229 (241)
Q Consensus 192 ~~~LkpgG~l~i~~~~---------------------------------~~~~~~~l~~~Gf~~~~~~~~~ 229 (241)
.++|||||++++.... .+++.++++++||++++.....
T Consensus 141 ~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~ 211 (279)
T 3ccf_A 141 HQALKSGGRFVAEFGGKGNIKYILEALYNALETLGIHNPQALNPWYFPSIGEYVNILEKQGFDVTYAALFN 211 (279)
T ss_dssp HHHEEEEEEEEEEEECTTTTHHHHHHHHHHHHHHTCCCGGGGCCCCCCCHHHHHHHHHHHTEEEEEEEEEE
T ss_pred HHhcCCCcEEEEEecCCcchHHHHHHHHHHHHhcCCccccCcCceeCCCHHHHHHHHHHcCCEEEEEEEec
Confidence 9999999999986532 1567899999999998877654
No 43
>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*
Probab=99.70 E-value=2.9e-16 Score=138.62 Aligned_cols=138 Identities=15% Similarity=0.157 Sum_probs=113.3
Q ss_pred HHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHH
Q psy1420 32 KDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLR 111 (241)
Q Consensus 32 ~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~ 111 (241)
.+.+++.+...++.+|||+|||+|..+ ..++. .....++++|+++.+++
T Consensus 79 ~~~~~~~~~~~~~~~vLDiGcG~G~~~-------------~~la~------------------~~~~~v~gvD~s~~~~~ 127 (318)
T 2fk8_A 79 VDLNLDKLDLKPGMTLLDIGCGWGTTM-------------RRAVE------------------RFDVNVIGLTLSKNQHA 127 (318)
T ss_dssp HHHHHTTSCCCTTCEEEEESCTTSHHH-------------HHHHH------------------HHCCEEEEEESCHHHHH
T ss_pred HHHHHHhcCCCCcCEEEEEcccchHHH-------------HHHHH------------------HCCCEEEEEECCHHHHH
Confidence 456667777788899999999999988 44443 11458999999999999
Q ss_pred HHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhcc--ccHHHHHH
Q psy1420 112 FLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNV--TRIDKALS 189 (241)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~--~~~~~~l~ 189 (241)
.++++.. ..++. +++++..+|+..++ ++||+|++..+++++ +++..+++
T Consensus 128 ~a~~~~~-------------------------~~~~~-~~v~~~~~d~~~~~---~~fD~v~~~~~l~~~~~~~~~~~l~ 178 (318)
T 2fk8_A 128 RCEQVLA-------------------------SIDTN-RSRQVLLQGWEDFA---EPVDRIVSIEAFEHFGHENYDDFFK 178 (318)
T ss_dssp HHHHHHH-------------------------TSCCS-SCEEEEESCGGGCC---CCCSEEEEESCGGGTCGGGHHHHHH
T ss_pred HHHHHHH-------------------------hcCCC-CceEEEECChHHCC---CCcCEEEEeChHHhcCHHHHHHHHH
Confidence 9999887 44544 46899999998775 689999999999998 68899999
Q ss_pred HHHHhccCCcEEEEEecC-------------------------------------HHHHHHHHHHCCCceEEEEEec
Q psy1420 190 EAYRVLKPGGRFLCLEFS-------------------------------------HEEFKSMIESAGFQYVTYENLT 229 (241)
Q Consensus 190 ~~~~~LkpgG~l~i~~~~-------------------------------------~~~~~~~l~~~Gf~~~~~~~~~ 229 (241)
++.++|||||++++.++. .+++.++++++||++++...+.
T Consensus 179 ~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~aGf~~~~~~~~~ 255 (318)
T 2fk8_A 179 RCFNIMPADGRMTVQSSVSYHPYEMAARGKKLSFETARFIKFIVTEIFPGGRLPSTEMMVEHGEKAGFTVPEPLSLR 255 (318)
T ss_dssp HHHHHSCTTCEEEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHHHTSTTCCCCCHHHHHHHHHHTTCBCCCCEECH
T ss_pred HHHHhcCCCcEEEEEEeccCCchhhhhccccccccccchhhHHHHhcCCCCcCCCHHHHHHHHHhCCCEEEEEEecc
Confidence 999999999999986532 2678899999999998877653
No 44
>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43
Probab=99.70 E-value=7.2e-16 Score=128.64 Aligned_cols=138 Identities=17% Similarity=0.251 Sum_probs=109.9
Q ss_pred HHHHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChH
Q psy1420 29 RLWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNP 108 (241)
Q Consensus 29 ~~~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~ 108 (241)
+.+.+.+.+.+. ++.+|||+|||+|..+ ..+.. ...+++++|+++.
T Consensus 26 ~~~~~~l~~~~~--~~~~vLDlG~G~G~~~-------------~~l~~-------------------~~~~v~~vD~s~~ 71 (227)
T 1ve3_A 26 ETLEPLLMKYMK--KRGKVLDLACGVGGFS-------------FLLED-------------------YGFEVVGVDISED 71 (227)
T ss_dssp HHHHHHHHHSCC--SCCEEEEETCTTSHHH-------------HHHHH-------------------TTCEEEEEESCHH
T ss_pred HHHHHHHHHhcC--CCCeEEEEeccCCHHH-------------HHHHH-------------------cCCEEEEEECCHH
Confidence 344455555544 3779999999999988 33333 2337999999999
Q ss_pred hHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeeh--hhccccHHH
Q psy1420 109 RLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFG--IRNVTRIDK 186 (241)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~--l~~~~~~~~ 186 (241)
+++.++++.. ..+ .++++.++|+...+.+.++||+|++..+ +++.+++..
T Consensus 72 ~~~~a~~~~~-------------------------~~~---~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~~ 123 (227)
T 1ve3_A 72 MIRKAREYAK-------------------------SRE---SNVEFIVGDARKLSFEDKTFDYVIFIDSIVHFEPLELNQ 123 (227)
T ss_dssp HHHHHHHHHH-------------------------HTT---CCCEEEECCTTSCCSCTTCEEEEEEESCGGGCCHHHHHH
T ss_pred HHHHHHHHHH-------------------------hcC---CCceEEECchhcCCCCCCcEEEEEEcCchHhCCHHHHHH
Confidence 9999998876 333 3688999999988877789999999988 556678889
Q ss_pred HHHHHHHhccCCcEEEEEecCH--------------------------------------------------HHHHHHHH
Q psy1420 187 ALSEAYRVLKPGGRFLCLEFSH--------------------------------------------------EEFKSMIE 216 (241)
Q Consensus 187 ~l~~~~~~LkpgG~l~i~~~~~--------------------------------------------------~~~~~~l~ 216 (241)
+++++.++|||||++++.+... .++.++++
T Consensus 124 ~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~ 203 (227)
T 1ve3_A 124 VFKEVRRVLKPSGKFIMYFTDLRELLPRLKESLVVGQKYWISKVIPDQEERTVVIEFKSEQDSFRVRFNVWGKTGVELLA 203 (227)
T ss_dssp HHHHHHHHEEEEEEEEEEEECHHHHGGGCCC---------CCEEEEETTTTEEEEEC-----CCEEEEECCCHHHHHHHH
T ss_pred HHHHHHHHcCCCcEEEEEecChHHHHHHHHhhhhcccceeecccccCccccEEEEEeccchhhheeehhhhchHHHHHHH
Confidence 9999999999999998876431 46788999
Q ss_pred HCCCceEEEEEe
Q psy1420 217 SAGFQYVTYENL 228 (241)
Q Consensus 217 ~~Gf~~~~~~~~ 228 (241)
++||..++....
T Consensus 204 ~~GF~~v~~~~~ 215 (227)
T 1ve3_A 204 KLYFTKEAEEKV 215 (227)
T ss_dssp TTTEEEEEEEEE
T ss_pred HHhhhHHHHHHh
Confidence 999999999886
No 45
>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}
Probab=99.69 E-value=3.5e-17 Score=142.19 Aligned_cols=131 Identities=18% Similarity=0.248 Sum_probs=90.8
Q ss_pred HHHHhhhhhccccchhhhhhhhHHHHHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcC
Q psy1420 6 YEVFENVAKSYDTMNDAMSFGIHRLWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQ 85 (241)
Q Consensus 6 ~~~f~~~~~~yd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (241)
.+.|+..++.|+....... ..+.+.+.+... .+.+|||+|||+|..+ ..+..
T Consensus 8 ~d~F~~~a~~Y~~~Rp~yp----~~l~~~l~~~~~--~~~~vLDvGcGtG~~~-------------~~l~~--------- 59 (257)
T 4hg2_A 8 KDHFTPVADAYRAFRPRYP----RALFRWLGEVAP--ARGDALDCGCGSGQAS-------------LGLAE--------- 59 (257)
T ss_dssp ------------CCCCCCC----HHHHHHHHHHSS--CSSEEEEESCTTTTTH-------------HHHHT---------
T ss_pred HHHHHHHHHHHHHHCCCcH----HHHHHHHHHhcC--CCCCEEEEcCCCCHHH-------------HHHHH---------
Confidence 4668888999987532111 123344444432 3458999999999998 44444
Q ss_pred CCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCC
Q psy1420 86 WKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIE 165 (241)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 165 (241)
...+++++|+|+.|++.+++. +++.+.+++++.+|++
T Consensus 60 ----------~~~~v~gvD~s~~ml~~a~~~---------------------------------~~v~~~~~~~e~~~~~ 96 (257)
T 4hg2_A 60 ----------FFERVHAVDPGEAQIRQALRH---------------------------------PRVTYAVAPAEDTGLP 96 (257)
T ss_dssp ----------TCSEEEEEESCHHHHHTCCCC---------------------------------TTEEEEECCTTCCCCC
T ss_pred ----------hCCEEEEEeCcHHhhhhhhhc---------------------------------CCceeehhhhhhhccc
Confidence 356899999999998765321 3689999999999999
Q ss_pred CCceeEEeeeehhhccccHHHHHHHHHHhccCCcEEEEEecCH
Q psy1420 166 SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH 208 (241)
Q Consensus 166 ~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 208 (241)
+++||+|++..++|++ ++.+++++++|+|||||+|++..+..
T Consensus 97 ~~sfD~v~~~~~~h~~-~~~~~~~e~~rvLkpgG~l~~~~~~~ 138 (257)
T 4hg2_A 97 PASVDVAIAAQAMHWF-DLDRFWAELRRVARPGAVFAAVTYGL 138 (257)
T ss_dssp SSCEEEEEECSCCTTC-CHHHHHHHHHHHEEEEEEEEEEEECC
T ss_pred CCcccEEEEeeehhHh-hHHHHHHHHHHHcCCCCEEEEEECCC
Confidence 9999999999999776 58899999999999999999877554
No 46
>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}
Probab=99.69 E-value=1.6e-16 Score=135.39 Aligned_cols=143 Identities=12% Similarity=0.034 Sum_probs=112.2
Q ss_pred hhccccchhhhhhhhHHHHHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhh
Q psy1420 13 AKSYDTMNDAMSFGIHRLWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYL 92 (241)
Q Consensus 13 ~~~yd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (241)
+..|+..... .......+++.+...++.+|||+|||+|..+ ..+.. ..
T Consensus 8 ~~~y~~~~~~-----~~~~~~~l~~~~~~~~~~~vLdiG~G~G~~~-------------~~l~~----~~---------- 55 (259)
T 2p35_A 8 AQQYLKFEDE-----RTRPARDLLAQVPLERVLNGYDLGCGPGNST-------------ELLTD----RY---------- 55 (259)
T ss_dssp CGGGBCCCCG-----GGHHHHHHHTTCCCSCCSSEEEETCTTTHHH-------------HHHHH----HH----------
T ss_pred HHHHHHHHHH-----HHHHHHHHHHhcCCCCCCEEEEecCcCCHHH-------------HHHHH----hC----------
Confidence 5567664332 1223345667777778889999999999988 44433 10
Q ss_pred hcccCCCceeecCChHhHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEE
Q psy1420 93 VESIRQFPNQIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAY 172 (241)
Q Consensus 93 ~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V 172 (241)
+...++++|+++.+++.++++. +++.+..+|+...+ ++++||+|
T Consensus 56 ---~~~~v~~~D~s~~~~~~a~~~~--------------------------------~~~~~~~~d~~~~~-~~~~fD~v 99 (259)
T 2p35_A 56 ---GVNVITGIDSDDDMLEKAADRL--------------------------------PNTNFGKADLATWK-PAQKADLL 99 (259)
T ss_dssp ---CTTSEEEEESCHHHHHHHHHHS--------------------------------TTSEEEECCTTTCC-CSSCEEEE
T ss_pred ---CCCEEEEEECCHHHHHHHHHhC--------------------------------CCcEEEECChhhcC-ccCCcCEE
Confidence 2568999999999999988763 25789999999887 67799999
Q ss_pred eeeehhhccccHHHHHHHHHHhccCCcEEEEEecC-----------------------------------HHHHHHHHHH
Q psy1420 173 TIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFS-----------------------------------HEEFKSMIES 217 (241)
Q Consensus 173 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~-----------------------------------~~~~~~~l~~ 217 (241)
+++.++++++++..++++++++|||||++++.... .+++.+++++
T Consensus 100 ~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 179 (259)
T 2p35_A 100 YANAVFQWVPDHLAVLSQLMDQLESGGVLAVQMPDNLQEPTHIAMHETADGGPWKDAFSGGGLRRKPLPPPSDYFNALSP 179 (259)
T ss_dssp EEESCGGGSTTHHHHHHHHGGGEEEEEEEEEEEECCTTSHHHHHHHHHHHHSTTGGGC-------CCCCCHHHHHHHHGG
T ss_pred EEeCchhhCCCHHHHHHHHHHhcCCCeEEEEEeCCCCCcHHHHHHHHHhcCcchHHHhccccccccCCCCHHHHHHHHHh
Confidence 99999999999999999999999999999987531 1678899999
Q ss_pred CCCceE
Q psy1420 218 AGFQYV 223 (241)
Q Consensus 218 ~Gf~~~ 223 (241)
+||.+.
T Consensus 180 aGf~v~ 185 (259)
T 2p35_A 180 KSSRVD 185 (259)
T ss_dssp GEEEEE
T ss_pred cCCceE
Confidence 999743
No 47
>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*
Probab=99.69 E-value=1.6e-16 Score=139.07 Aligned_cols=135 Identities=15% Similarity=0.281 Sum_probs=98.3
Q ss_pred CCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCC--CceeecCChHhHHHHHHHHh
Q psy1420 41 PTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQ--FPNQIDIPNPRLRFLEANAE 118 (241)
Q Consensus 41 ~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~D~s~~~~~~~~~~~~ 118 (241)
..++.+|||+|||+|..+ ..++..+. ... ... .++++|+|+.|++.+++++.
T Consensus 50 ~~~~~~VLDiG~GtG~~~-------------~~~l~~l~---~~~----------~~~~v~~~~vD~S~~ml~~a~~~~~ 103 (292)
T 2aot_A 50 TKSEIKILSIGGGAGEID-------------LQILSKVQ---AQY----------PGVCINNEVVEPSAEQIAKYKELVA 103 (292)
T ss_dssp TCSEEEEEEETCTTSHHH-------------HHHHHHHH---HHS----------TTCEEEEEEECSCHHHHHHHHHHHH
T ss_pred CCCCCeEEEEcCCCCHHH-------------HHHHHHHH---hhC----------CCceeeEEEEeCCHHHHHHHHHHHH
Confidence 356789999999999876 33333111 111 123 24999999999999998876
Q ss_pred cCCCccccccccceecceeeeeecccc-CCCCCCeeEEecccCCCC------CCCCceeEEeeeehhhccccHHHHHHHH
Q psy1420 119 ELPIESDSYSAYTIAFGIRNVTRIDKI-DIPNPRLRFLEANAEELP------IESDSYSAYTIAFGIRNVTRIDKALSEA 191 (241)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~d~~~~~------~~~~~~D~V~~~~~l~~~~~~~~~l~~~ 191 (241)
.. ++.+-++.+...++..++ +++++||+|++..++++++++.++|+++
T Consensus 104 -------------------------~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~d~~~~l~~~ 158 (292)
T 2aot_A 104 -------------------------KTSNLENVKFAWHKETSSEYQSRMLEKKELQKWDFIHMIQMLYYVKDIPATLKFF 158 (292)
T ss_dssp -------------------------TCSSCTTEEEEEECSCHHHHHHHHHTTTCCCCEEEEEEESCGGGCSCHHHHHHHH
T ss_pred -------------------------hccCCCcceEEEEecchhhhhhhhccccCCCceeEEEEeeeeeecCCHHHHHHHH
Confidence 21 222112344556655433 4467899999999999999999999999
Q ss_pred HHhccCCcEEEEEecC--------------------------HHHHHHHHHHCCCceEEEE
Q psy1420 192 YRVLKPGGRFLCLEFS--------------------------HEEFKSMIESAGFQYVTYE 226 (241)
Q Consensus 192 ~~~LkpgG~l~i~~~~--------------------------~~~~~~~l~~~Gf~~~~~~ 226 (241)
+++|||||++++.... .+++.++++++||+++...
T Consensus 159 ~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~ 219 (292)
T 2aot_A 159 HSLLGTNAKMLIIVVSGSSGWDKLWKKYGSRFPQDDLCQYITSDDLTQMLDNLGLKYECYD 219 (292)
T ss_dssp HHTEEEEEEEEEEEECTTSHHHHHHHHHGGGSCCCTTCCCCCHHHHHHHHHHHTCCEEEEE
T ss_pred HHHcCCCcEEEEEEecCCccHHHHHHHHHHhccCCCcccCCCHHHHHHHHHHCCCceEEEE
Confidence 9999999999986422 2688999999999987643
No 48
>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*
Probab=99.68 E-value=1.5e-15 Score=137.64 Aligned_cols=150 Identities=16% Similarity=0.158 Sum_probs=121.6
Q ss_pred HHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHH
Q psy1420 32 KDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLR 111 (241)
Q Consensus 32 ~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~ 111 (241)
...+.+.++..++.+|||+|||+|..+ ..++. . . +..+++++|+ +.+++
T Consensus 191 ~~~l~~~~~~~~~~~vlDvG~G~G~~~-------------~~l~~----~---~----------p~~~~~~~D~-~~~~~ 239 (369)
T 3gwz_A 191 AGQVAAAYDFSGAATAVDIGGGRGSLM-------------AAVLD----A---F----------PGLRGTLLER-PPVAE 239 (369)
T ss_dssp HHHHHHHSCCTTCSEEEEETCTTSHHH-------------HHHHH----H---C----------TTCEEEEEEC-HHHHH
T ss_pred HHHHHHhCCCccCcEEEEeCCCccHHH-------------HHHHH----H---C----------CCCeEEEEcC-HHHHH
Confidence 345666667777889999999999988 44443 1 1 3457899999 99999
Q ss_pred HHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHH--HHHH
Q psy1420 112 FLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRID--KALS 189 (241)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~--~~l~ 189 (241)
.+++++. +.++. +++++...|+. .+.+. +||+|++..++|++++.. ++|+
T Consensus 240 ~a~~~~~-------------------------~~~l~-~~v~~~~~d~~-~~~p~-~~D~v~~~~vlh~~~d~~~~~~L~ 291 (369)
T 3gwz_A 240 EARELLT-------------------------GRGLA-DRCEILPGDFF-ETIPD-GADVYLIKHVLHDWDDDDVVRILR 291 (369)
T ss_dssp HHHHHHH-------------------------HTTCT-TTEEEEECCTT-TCCCS-SCSEEEEESCGGGSCHHHHHHHHH
T ss_pred HHHHhhh-------------------------hcCcC-CceEEeccCCC-CCCCC-CceEEEhhhhhccCCHHHHHHHHH
Confidence 9998887 55554 57999999998 45544 799999999999998876 8999
Q ss_pred HHHHhccCCcEEEEEecC--------------------------HHHHHHHHHHCCCceEEEEEecCceeEEEeeec
Q psy1420 190 EAYRVLKPGGRFLCLEFS--------------------------HEEFKSMIESAGFQYVTYENLTFGVVAIHSGFK 240 (241)
Q Consensus 190 ~~~~~LkpgG~l~i~~~~--------------------------~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~~ 240 (241)
++++.|+|||++++.+.. .++|+++++++||+++++.....+...++.+++
T Consensus 292 ~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~svie~~~ 368 (369)
T 3gwz_A 292 RIATAMKPDSRLLVIDNLIDERPAASTLFVDLLLLVLVGGAERSESEFAALLEKSGLRVERSLPCGAGPVRIVEIRR 368 (369)
T ss_dssp HHHTTCCTTCEEEEEEEBCCSSCCHHHHHHHHHHHHHHSCCCBCHHHHHHHHHTTTEEEEEEEECSSSSEEEEEEEE
T ss_pred HHHHHcCCCCEEEEEEeccCCCCCCchhHhhHHHHhhcCCccCCHHHHHHHHHHCCCeEEEEEECCCCCcEEEEEEe
Confidence 999999999999997622 288999999999999999886667777777765
No 49
>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*
Probab=99.68 E-value=3.7e-16 Score=127.66 Aligned_cols=133 Identities=15% Similarity=0.158 Sum_probs=107.8
Q ss_pred HHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHH
Q psy1420 34 IFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFL 113 (241)
Q Consensus 34 ~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~ 113 (241)
.+.+.+...++.+|||+|||+|..+ ..++. ...+++++|+++.+++.+
T Consensus 23 ~l~~~~~~~~~~~vLdiG~G~G~~~-------------~~l~~-------------------~~~~v~~vD~s~~~~~~a 70 (199)
T 2xvm_A 23 EVLEAVKVVKPGKTLDLGCGNGRNS-------------LYLAA-------------------NGYDVDAWDKNAMSIANV 70 (199)
T ss_dssp HHHHHTTTSCSCEEEEETCTTSHHH-------------HHHHH-------------------TTCEEEEEESCHHHHHHH
T ss_pred HHHHHhhccCCCeEEEEcCCCCHHH-------------HHHHH-------------------CCCeEEEEECCHHHHHHH
Confidence 3445556667789999999999988 44444 245799999999999999
Q ss_pred HHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccc--cHHHHHHHH
Q psy1420 114 EANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVT--RIDKALSEA 191 (241)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~--~~~~~l~~~ 191 (241)
+++.. ..+++ ++++...|+...+. .++||+|++..++++++ ++..+++++
T Consensus 71 ~~~~~-------------------------~~~~~--~~~~~~~d~~~~~~-~~~~D~v~~~~~l~~~~~~~~~~~l~~~ 122 (199)
T 2xvm_A 71 ERIKS-------------------------IENLD--NLHTRVVDLNNLTF-DRQYDFILSTVVLMFLEAKTIPGLIANM 122 (199)
T ss_dssp HHHHH-------------------------HHTCT--TEEEEECCGGGCCC-CCCEEEEEEESCGGGSCGGGHHHHHHHH
T ss_pred HHHHH-------------------------hCCCC--CcEEEEcchhhCCC-CCCceEEEEcchhhhCCHHHHHHHHHHH
Confidence 98876 44443 58899999998877 78999999999999987 789999999
Q ss_pred HHhccCCcEEEEEec----------------CHHHHHHHHHHCCCceEEEEEe
Q psy1420 192 YRVLKPGGRFLCLEF----------------SHEEFKSMIESAGFQYVTYENL 228 (241)
Q Consensus 192 ~~~LkpgG~l~i~~~----------------~~~~~~~~l~~~Gf~~~~~~~~ 228 (241)
.++|||||++++.+. +.+++.+++++ |++++....
T Consensus 123 ~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--f~~~~~~~~ 173 (199)
T 2xvm_A 123 QRCTKPGGYNLIVAAMDTADYPCTVGFPFAFKEGELRRYYEG--WERVKYNED 173 (199)
T ss_dssp HHTEEEEEEEEEEEEBCCSSSCCCSCCSCCBCTTHHHHHTTT--SEEEEEECC
T ss_pred HHhcCCCeEEEEEEeeccCCcCCCCCCCCccCHHHHHHHhcC--CeEEEeccc
Confidence 999999999887642 33888999876 998887644
No 50
>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*
Probab=99.68 E-value=8.2e-16 Score=138.47 Aligned_cols=148 Identities=16% Similarity=0.242 Sum_probs=121.4
Q ss_pred HHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHH
Q psy1420 33 DIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRF 112 (241)
Q Consensus 33 ~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~ 112 (241)
+.+++.+...++.+|||+|||+|..+ ..++. . . +..+++++|+ +.+++.
T Consensus 180 ~~l~~~~~~~~~~~vLDvG~G~G~~~-------------~~l~~----~---~----------p~~~~~~~D~-~~~~~~ 228 (359)
T 1x19_A 180 QLLLEEAKLDGVKKMIDVGGGIGDIS-------------AAMLK----H---F----------PELDSTILNL-PGAIDL 228 (359)
T ss_dssp HHHHHHCCCTTCCEEEEESCTTCHHH-------------HHHHH----H---C----------TTCEEEEEEC-GGGHHH
T ss_pred HHHHHhcCCCCCCEEEEECCcccHHH-------------HHHHH----H---C----------CCCeEEEEec-HHHHHH
Confidence 45666667778889999999999988 44443 1 0 2457999999 999999
Q ss_pred HHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhcccc--HHHHHHH
Q psy1420 113 LEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTR--IDKALSE 190 (241)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~--~~~~l~~ 190 (241)
+++++. +.++. +++++..+|+...+.+. .|+|++..+++++++ ..++|++
T Consensus 229 a~~~~~-------------------------~~~~~-~~v~~~~~d~~~~~~~~--~D~v~~~~vlh~~~d~~~~~~l~~ 280 (359)
T 1x19_A 229 VNENAA-------------------------EKGVA-DRMRGIAVDIYKESYPE--ADAVLFCRILYSANEQLSTIMCKK 280 (359)
T ss_dssp HHHHHH-------------------------HTTCT-TTEEEEECCTTTSCCCC--CSEEEEESCGGGSCHHHHHHHHHH
T ss_pred HHHHHH-------------------------hcCCC-CCEEEEeCccccCCCCC--CCEEEEechhccCCHHHHHHHHHH
Confidence 998887 44554 46999999999876654 399999999999987 7899999
Q ss_pred HHHhccCCcEEEEEe------------------------------cCHHHHHHHHHHCCCceEEEEEecCceeEEEeeec
Q psy1420 191 AYRVLKPGGRFLCLE------------------------------FSHEEFKSMIESAGFQYVTYENLTFGVVAIHSGFK 240 (241)
Q Consensus 191 ~~~~LkpgG~l~i~~------------------------------~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~~ 240 (241)
++++|||||++++.+ .+.+++.++++++||+.+++.... ...++.++|
T Consensus 281 ~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~t~~e~~~ll~~aGf~~v~~~~~~--~~~vi~a~k 358 (359)
T 1x19_A 281 AFDAMRSGGRLLILDMVIDDPENPNFDYLSHYILGAGMPFSVLGFKEQARYKEILESLGYKDVTMVRKY--DHLLVQAVK 358 (359)
T ss_dssp HHTTCCTTCEEEEEEECCCCTTSCCHHHHHHHGGGGGSSCCCCCCCCGGGHHHHHHHHTCEEEEEEEET--TEEEEEEEC
T ss_pred HHHhcCCCCEEEEEecccCCCCCchHHHHHHHHHhcCCCCcccCCCCHHHHHHHHHHCCCceEEEEecC--CceEEEEeC
Confidence 999999999998876 233789999999999999998876 567888988
Q ss_pred C
Q psy1420 241 L 241 (241)
Q Consensus 241 ~ 241 (241)
|
T Consensus 359 p 359 (359)
T 1x19_A 359 P 359 (359)
T ss_dssp C
T ss_pred C
Confidence 7
No 51
>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41
Probab=99.68 E-value=1e-15 Score=128.20 Aligned_cols=150 Identities=21% Similarity=0.286 Sum_probs=113.8
Q ss_pred HHHHhhhhhccccchhhhhhhhHHHHHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcC
Q psy1420 6 YEVFENVAKSYDTMNDAMSFGIHRLWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQ 85 (241)
Q Consensus 6 ~~~f~~~~~~yd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (241)
-..|+..+..|+.+......... ...+.+.... ++.+|||+|||+|..+ ..+..
T Consensus 14 ~~~~~~~~~~y~~~~~~~~~~~~-~~~~~l~~~~---~~~~vLDiG~G~G~~~-------------~~l~~--------- 67 (219)
T 1vlm_A 14 WHIFERFVNEYERWFLVHRFAYL-SELQAVKCLL---PEGRGVEIGVGTGRFA-------------VPLKI--------- 67 (219)
T ss_dssp THHHHHTHHHHHHHHHHTHHHHH-HHHHHHHHHC---CSSCEEEETCTTSTTH-------------HHHTC---------
T ss_pred eeecchhHHHHHHHHHhcchhHH-HHHHHHHHhC---CCCcEEEeCCCCCHHH-------------HHHHH---------
Confidence 35677777778775332211111 1122333332 3779999999999988 33322
Q ss_pred CCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCC
Q psy1420 86 WKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIE 165 (241)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 165 (241)
. +++|+++.+++.++++ ++++..+|+..++.+
T Consensus 68 ----------~----~~vD~s~~~~~~a~~~----------------------------------~~~~~~~d~~~~~~~ 99 (219)
T 1vlm_A 68 ----------K----IGVEPSERMAEIARKR----------------------------------GVFVLKGTAENLPLK 99 (219)
T ss_dssp ----------C----EEEESCHHHHHHHHHT----------------------------------TCEEEECBTTBCCSC
T ss_pred ----------H----hccCCCHHHHHHHHhc----------------------------------CCEEEEcccccCCCC
Confidence 1 8999999999988754 267888898888877
Q ss_pred CCceeEEeeeehhhccccHHHHHHHHHHhccCCcEEEEEec--------------------------CHHHHHHHHHHCC
Q psy1420 166 SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEF--------------------------SHEEFKSMIESAG 219 (241)
Q Consensus 166 ~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~--------------------------~~~~~~~~l~~~G 219 (241)
.++||+|++..++++++++..+++++.++|+|||++++.+. +.+++.++++++|
T Consensus 100 ~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~G 179 (219)
T 1vlm_A 100 DESFDFALMVTTICFVDDPERALKEAYRILKKGGYLIVGIVDRESFLGREYEKNKEKSVFYKNARFFSTEELMDLMRKAG 179 (219)
T ss_dssp TTCEEEEEEESCGGGSSCHHHHHHHHHHHEEEEEEEEEEEECSSSHHHHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTT
T ss_pred CCCeeEEEEcchHhhccCHHHHHHHHHHHcCCCcEEEEEEeCCccHHHHHHHHHhcCcchhcccccCCHHHHHHHHHHCC
Confidence 78999999999999999999999999999999999998753 2388999999999
Q ss_pred CceEEEEEec
Q psy1420 220 FQYVTYENLT 229 (241)
Q Consensus 220 f~~~~~~~~~ 229 (241)
|++++.....
T Consensus 180 f~~~~~~~~~ 189 (219)
T 1vlm_A 180 FEEFKVVQTL 189 (219)
T ss_dssp CEEEEEEEEC
T ss_pred CeEEEEeccc
Confidence 9998887664
No 52
>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}
Probab=99.68 E-value=1.8e-16 Score=134.42 Aligned_cols=131 Identities=17% Similarity=0.165 Sum_probs=104.1
Q ss_pred HHHHHhhcC-CCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhH
Q psy1420 32 KDIFIDRLG-PTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRL 110 (241)
Q Consensus 32 ~~~~~~~l~-~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~ 110 (241)
.+.+...+. .+++.+|||+|||+|.++ ..+.. ...+++++|+|+.++
T Consensus 29 ~~~~~~~l~~~~~~~~vLDiGcG~G~~~-------------~~l~~-------------------~~~~v~gvD~s~~~~ 76 (240)
T 3dli_A 29 KARLRRYIPYFKGCRRVLDIGCGRGEFL-------------ELCKE-------------------EGIESIGVDINEDMI 76 (240)
T ss_dssp HHHHGGGGGGTTTCSCEEEETCTTTHHH-------------HHHHH-------------------HTCCEEEECSCHHHH
T ss_pred HHHHHHHHhhhcCCCeEEEEeCCCCHHH-------------HHHHh-------------------CCCcEEEEECCHHHH
Confidence 334444433 356789999999999988 44433 245799999999999
Q ss_pred HHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCC--CCCCCceeEEeeeehhhccccH--HH
Q psy1420 111 RFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL--PIESDSYSAYTIAFGIRNVTRI--DK 186 (241)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~D~V~~~~~l~~~~~~--~~ 186 (241)
+.++++ +++...|+... ++++++||+|++..++++++++ ..
T Consensus 77 ~~a~~~-----------------------------------~~~~~~d~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~ 121 (240)
T 3dli_A 77 KFCEGK-----------------------------------FNVVKSDAIEYLKSLPDKYLDGVMISHFVEHLDPERLFE 121 (240)
T ss_dssp HHHHTT-----------------------------------SEEECSCHHHHHHTSCTTCBSEEEEESCGGGSCGGGHHH
T ss_pred HHHHhh-----------------------------------cceeeccHHHHhhhcCCCCeeEEEECCchhhCCcHHHHH
Confidence 887643 45677777664 6677899999999999999854 99
Q ss_pred HHHHHHHhccCCcEEEEEecCH---------------------HHHHHHHHHCCCceEEEEEec
Q psy1420 187 ALSEAYRVLKPGGRFLCLEFSH---------------------EEFKSMIESAGFQYVTYENLT 229 (241)
Q Consensus 187 ~l~~~~~~LkpgG~l~i~~~~~---------------------~~~~~~l~~~Gf~~~~~~~~~ 229 (241)
+++++.++|||||++++..... +++.++++++||++++.....
T Consensus 122 ~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~~ 185 (240)
T 3dli_A 122 LLSLCYSKMKYSSYIVIESPNPTSLYSLINFYIDPTHKKPVHPETLKFILEYLGFRDVKIEFFE 185 (240)
T ss_dssp HHHHHHHHBCTTCCEEEEEECTTSHHHHHHHTTSTTCCSCCCHHHHHHHHHHHTCEEEEEEEEC
T ss_pred HHHHHHHHcCCCcEEEEEeCCcchhHHHHHHhcCccccccCCHHHHHHHHHHCCCeEEEEEEec
Confidence 9999999999999999876432 789999999999998888764
No 53
>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}
Probab=99.67 E-value=2.5e-16 Score=130.55 Aligned_cols=134 Identities=21% Similarity=0.275 Sum_probs=102.3
Q ss_pred HHhhhhhccccchhhhhhhhHHHHHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCC
Q psy1420 8 VFENVAKSYDTMNDAMSFGIHRLWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWK 87 (241)
Q Consensus 8 ~f~~~~~~yd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (241)
+|+.++..|+.+...............++..+.. ++.+|||+|||+|..+ ..+ .
T Consensus 2 ~fd~~a~~y~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~vLdiG~G~G~~~-------------~~l-~----------- 55 (211)
T 2gs9_A 2 PFASLAEAYEAWYGTPLGAYVIAEEERALKGLLP-PGESLLEVGAGTGYWL-------------RRL-P----------- 55 (211)
T ss_dssp TTTTTTTTTTGGGGSHHHHHHHHHHHHHHHTTCC-CCSEEEEETCTTCHHH-------------HHC-C-----------
T ss_pred chhhHHHHHHHHhcccchhhhHHHHHHHHHHhcC-CCCeEEEECCCCCHhH-------------HhC-C-----------
Confidence 5888899998864332221111222333344333 7789999999999887 222 1
Q ss_pred cchhhhcccCCCceeecCChHhHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCC
Q psy1420 88 PYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESD 167 (241)
Q Consensus 88 ~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 167 (241)
..+++++|+++.+++.++++.. ++.+..+|+..++.+++
T Consensus 56 ---------~~~v~~vD~s~~~~~~a~~~~~--------------------------------~~~~~~~d~~~~~~~~~ 94 (211)
T 2gs9_A 56 ---------YPQKVGVEPSEAMLAVGRRRAP--------------------------------EATWVRAWGEALPFPGE 94 (211)
T ss_dssp ---------CSEEEEECCCHHHHHHHHHHCT--------------------------------TSEEECCCTTSCCSCSS
T ss_pred ---------CCeEEEEeCCHHHHHHHHHhCC--------------------------------CcEEEEcccccCCCCCC
Confidence 2268999999999999887643 47788999998888778
Q ss_pred ceeEEeeeehhhccccHHHHHHHHHHhccCCcEEEEEecCH
Q psy1420 168 SYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH 208 (241)
Q Consensus 168 ~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 208 (241)
+||+|++..++++++++.++++++.++|||||++++.+...
T Consensus 95 ~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 135 (211)
T 2gs9_A 95 SFDVVLLFTTLEFVEDVERVLLEARRVLRPGGALVVGVLEA 135 (211)
T ss_dssp CEEEEEEESCTTTCSCHHHHHHHHHHHEEEEEEEEEEEECT
T ss_pred cEEEEEEcChhhhcCCHHHHHHHHHHHcCCCCEEEEEecCC
Confidence 99999999999999999999999999999999999986443
No 54
>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*
Probab=99.67 E-value=1.5e-15 Score=129.65 Aligned_cols=162 Identities=14% Similarity=0.155 Sum_probs=110.4
Q ss_pred CCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccC-CCceeecCChHhHHHHHHHHh
Q psy1420 40 GPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIR-QFPNQIDIPNPRLRFLEANAE 118 (241)
Q Consensus 40 ~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~s~~~~~~~~~~~~ 118 (241)
...++.+|||+|||+|..+ ..++. .. ..++++|+|+.+++.++++..
T Consensus 53 ~~~~~~~vLDlGcG~G~~~-------------~~l~~-------------------~~~~~v~gvD~s~~~l~~a~~~~~ 100 (265)
T 2i62_A 53 GAVKGELLIDIGSGPTIYQ-------------LLSAC-------------------ESFTEIIVSDYTDQNLWELQKWLK 100 (265)
T ss_dssp SSCCEEEEEEESCTTCCGG-------------GTTGG-------------------GTEEEEEEEESCHHHHHHHHHHHT
T ss_pred cccCCCEEEEECCCccHHH-------------HHHhh-------------------cccCeEEEecCCHHHHHHHHHHHh
Confidence 4467789999999999988 33332 22 379999999999999988876
Q ss_pred cCCCccccccccceecceeeeeeccccCCC----------CCCe-eEEecccCCCCC-CC---CceeEEeeeehhh----
Q psy1420 119 ELPIESDSYSAYTIAFGIRNVTRIDKIDIP----------NPRL-RFLEANAEELPI-ES---DSYSAYTIAFGIR---- 179 (241)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~-~~~~~d~~~~~~-~~---~~~D~V~~~~~l~---- 179 (241)
..+. .+.|.....-. .. ..+.. ..++ .+..+|+...+. +. ++||+|++..+++
T Consensus 101 ~~~~---~~~~~~~~~~~---~~--~~~~~~~~~~~~~~l~~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~ 172 (265)
T 2i62_A 101 KEPG---AFDWSPVVTYV---CD--LEGNRMKGPEKEEKLRRAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACP 172 (265)
T ss_dssp TCTT---CCCCHHHHHHH---HH--HTTTCSCHHHHHHHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCS
T ss_pred cCCc---cccchhhhhhh---hc--ccccccchHHHHHHhhhhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcC
Confidence 1100 00000000000 00 00000 0126 788888887532 44 7899999999999
Q ss_pred ccccHHHHHHHHHHhccCCcEEEEEec------------------CHHHHHHHHHHCCCceEEEEEecC---------ce
Q psy1420 180 NVTRIDKALSEAYRVLKPGGRFLCLEF------------------SHEEFKSMIESAGFQYVTYENLTF---------GV 232 (241)
Q Consensus 180 ~~~~~~~~l~~~~~~LkpgG~l~i~~~------------------~~~~~~~~l~~~Gf~~~~~~~~~~---------~~ 232 (241)
+.+++..+++++.++|||||++++.+. +.+++.++++++||+++++..... ..
T Consensus 173 ~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~~ 252 (265)
T 2i62_A 173 DLPAYRTALRNLGSLLKPGGFLVMVDALKSSYYMIGEQKFSSLPLGWETVRDAVEEAGYTIEQFEVISQNYSSTTSNNEG 252 (265)
T ss_dssp SHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEEECCCCCHHHHHHHHHHTTCEEEEEEEECCCCCTTTBCCCC
T ss_pred ChHHHHHHHHHHHhhCCCCcEEEEEecCCCceEEcCCccccccccCHHHHHHHHHHCCCEEEEEEEecccCCccccccce
Confidence 667889999999999999999998652 236999999999999998887641 13
Q ss_pred eEEEeeecC
Q psy1420 233 VAIHSGFKL 241 (241)
Q Consensus 233 ~~~~~~~~~ 241 (241)
..+++++|+
T Consensus 253 ~~~~~a~K~ 261 (265)
T 2i62_A 253 LFSLVGRKP 261 (265)
T ss_dssp EEEEEEECC
T ss_pred EEEEEeccc
Confidence 445667764
No 55
>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}
Probab=99.66 E-value=3.9e-16 Score=129.91 Aligned_cols=131 Identities=11% Similarity=0.137 Sum_probs=106.1
Q ss_pred HHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHH
Q psy1420 33 DIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRF 112 (241)
Q Consensus 33 ~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~ 112 (241)
+.+.+.+. .++.+|||+|||+|..+ ..+.. ....++++|+++.+++.
T Consensus 23 ~~l~~~~~-~~~~~vLdiG~G~G~~~-------------~~l~~-------------------~~~~~~~~D~~~~~~~~ 69 (230)
T 3cc8_A 23 PNLLKHIK-KEWKEVLDIGCSSGALG-------------AAIKE-------------------NGTRVSGIEAFPEAAEQ 69 (230)
T ss_dssp HHHHTTCC-TTCSEEEEETCTTSHHH-------------HHHHT-------------------TTCEEEEEESSHHHHHH
T ss_pred HHHHHHhc-cCCCcEEEeCCCCCHHH-------------HHHHh-------------------cCCeEEEEeCCHHHHHH
Confidence 44555555 67789999999999988 44433 23579999999999988
Q ss_pred HHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCC--CCCCCCceeEEeeeehhhccccHHHHHHH
Q psy1420 113 LEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEE--LPIESDSYSAYTIAFGIRNVTRIDKALSE 190 (241)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~D~V~~~~~l~~~~~~~~~l~~ 190 (241)
++++.. ++...|+.. .+.++++||+|++..++++++++..++++
T Consensus 70 ~~~~~~----------------------------------~~~~~d~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~ 115 (230)
T 3cc8_A 70 AKEKLD----------------------------------HVVLGDIETMDMPYEEEQFDCVIFGDVLEHLFDPWAVIEK 115 (230)
T ss_dssp HHTTSS----------------------------------EEEESCTTTCCCCSCTTCEEEEEEESCGGGSSCHHHHHHH
T ss_pred HHHhCC----------------------------------cEEEcchhhcCCCCCCCccCEEEECChhhhcCCHHHHHHH
Confidence 875432 467778765 45666799999999999999999999999
Q ss_pred HHHhccCCcEEEEEec--------------------------------CHHHHHHHHHHCCCceEEEEEecC
Q psy1420 191 AYRVLKPGGRFLCLEF--------------------------------SHEEFKSMIESAGFQYVTYENLTF 230 (241)
Q Consensus 191 ~~~~LkpgG~l~i~~~--------------------------------~~~~~~~~l~~~Gf~~~~~~~~~~ 230 (241)
+.++|+|||++++... +.+++.++++++||++++.....+
T Consensus 116 ~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~ 187 (230)
T 3cc8_A 116 VKPYIKQNGVILASIPNVSHISVLAPLLAGNWTYTEYGLLDKTHIRFFTFNEMLRMFLKAGYSISKVDRVYV 187 (230)
T ss_dssp TGGGEEEEEEEEEEEECTTSHHHHHHHHTTCCCCBSSSTTBTTCCCCCCHHHHHHHHHHTTEEEEEEEEEEC
T ss_pred HHHHcCCCCEEEEEeCCcchHHHHHHHhcCCceeccCCCCCcceEEEecHHHHHHHHHHcCCeEEEEEeccc
Confidence 9999999999998652 238999999999999998887654
No 56
>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...
Probab=99.66 E-value=2e-15 Score=131.65 Aligned_cols=151 Identities=17% Similarity=0.238 Sum_probs=101.0
Q ss_pred CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCC
Q psy1420 42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP 121 (241)
Q Consensus 42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~ 121 (241)
.++.+|||+|||+|..+ .++. . .....++++|+|+.|++.+++++...+
T Consensus 70 ~~~~~vLDiGcG~G~~~--------------~l~~-------~----------~~~~~v~gvD~s~~~l~~a~~~~~~~~ 118 (289)
T 2g72_A 70 VSGRTLIDIGSGPTVYQ--------------LLSA-------C----------SHFEDITMTDFLEVNRQELGRWLQEEP 118 (289)
T ss_dssp SCCSEEEEETCTTCCGG--------------GTTG-------G----------GGCSEEEEECSCHHHHHHHHHHHTTCT
T ss_pred CCCCeEEEECCCcChHH--------------HHhh-------c----------cCCCeEEEeCCCHHHHHHHHHHHhhCc
Confidence 36789999999999954 1111 0 024589999999999999988765211
Q ss_pred Cccccccccceecceeeeeecccc---------CCCCCCeeEEecccCC-CCC-----CCCceeEEeeeehhhc----cc
Q psy1420 122 IESDSYSAYTIAFGIRNVTRIDKI---------DIPNPRLRFLEANAEE-LPI-----ESDSYSAYTIAFGIRN----VT 182 (241)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~d~~~-~~~-----~~~~~D~V~~~~~l~~----~~ 182 (241)
. .+.|... +.++...... .+....++++.+|+.. +|+ ++++||+|++++++++ ++
T Consensus 119 ~---~~~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~ 192 (289)
T 2g72_A 119 G---AFNWSMY---SQHACLIEGKGECWQDKERQLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLA 192 (289)
T ss_dssp T---CCCCHHH---HHHHHHHHCSCCCHHHHHHHHHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHH
T ss_pred c---cccchhh---hhHHHHhcCcccchhhhHHHHHhhhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHH
Confidence 0 0000000 0000000000 0000014566778776 443 3457999999999999 77
Q ss_pred cHHHHHHHHHHhccCCcEEEEEe------------------cCHHHHHHHHHHCCCceEEEEEec
Q psy1420 183 RIDKALSEAYRVLKPGGRFLCLE------------------FSHEEFKSMIESAGFQYVTYENLT 229 (241)
Q Consensus 183 ~~~~~l~~~~~~LkpgG~l~i~~------------------~~~~~~~~~l~~~Gf~~~~~~~~~ 229 (241)
++..+|++++++|||||+|++.. ++.+++.++++++||+++++....
T Consensus 193 ~~~~~l~~~~r~LkpGG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~~ 257 (289)
T 2g72_A 193 SFQRALDHITTLLRPGGHLLLIGALEESWYLAGEARLTVVPVSEEEVREALVRSGYKVRDLRTYI 257 (289)
T ss_dssp HHHHHHHHHHTTEEEEEEEEEEEEESCCEEEETTEEEECCCCCHHHHHHHHHHTTEEEEEEEEEE
T ss_pred HHHHHHHHHHHhcCCCCEEEEEEecCcceEEcCCeeeeeccCCHHHHHHHHHHcCCeEEEeeEee
Confidence 88999999999999999999863 234899999999999998888765
No 57
>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36
Probab=99.66 E-value=1.2e-16 Score=133.27 Aligned_cols=145 Identities=7% Similarity=0.040 Sum_probs=103.2
Q ss_pred hhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHH
Q psy1420 37 DRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEAN 116 (241)
Q Consensus 37 ~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~ 116 (241)
+.+...++.+|||+|||+|..+ ..++. ....++|+|+|+.|++.++++
T Consensus 16 ~~l~~~~~~~vLD~GCG~G~~~-------------~~la~-------------------~g~~V~gvD~S~~~l~~a~~~ 63 (203)
T 1pjz_A 16 SSLNVVPGARVLVPLCGKSQDM-------------SWLSG-------------------QGYHVVGAELSEAAVERYFTE 63 (203)
T ss_dssp HHHCCCTTCEEEETTTCCSHHH-------------HHHHH-------------------HCCEEEEEEECHHHHHHHHHH
T ss_pred HhcccCCCCEEEEeCCCCcHhH-------------HHHHH-------------------CCCeEEEEeCCHHHHHHHHHH
Confidence 4445567889999999999988 44443 355899999999999999887
Q ss_pred HhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCC-CceeEEeeeehhhcccc--HHHHHHHHHH
Q psy1420 117 AEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIES-DSYSAYTIAFGIRNVTR--IDKALSEAYR 193 (241)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~~D~V~~~~~l~~~~~--~~~~l~~~~~ 193 (241)
....+... ..-..+... ..++++.++|+..++.+. ++||+|++..++++++. ...+++++++
T Consensus 64 ~~~~~~~~-------------~~~~~~~~~--~~~v~~~~~d~~~l~~~~~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r 128 (203)
T 1pjz_A 64 RGEQPHIT-------------SQGDFKVYA--APGIEIWCGDFFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEA 128 (203)
T ss_dssp HCSCSEEE-------------EETTEEEEE--CSSSEEEEECCSSSTHHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHH
T ss_pred ccCCcccc-------------ccccccccc--CCccEEEECccccCCcccCCCEEEEEECcchhhCCHHHHHHHHHHHHH
Confidence 64100000 000000000 136899999999988654 68999999999988764 4578999999
Q ss_pred hccCCcEEEEE--ec------------CHHHHHHHHHHCCCceEEEEEec
Q psy1420 194 VLKPGGRFLCL--EF------------SHEEFKSMIESAGFQYVTYENLT 229 (241)
Q Consensus 194 ~LkpgG~l~i~--~~------------~~~~~~~~l~~~Gf~~~~~~~~~ 229 (241)
+|||||++++. ++ +.+++.+++++ ||+++..+...
T Consensus 129 ~LkpgG~~~l~~~~~~~~~~~~~~~~~~~~el~~~~~~-gf~i~~~~~~~ 177 (203)
T 1pjz_A 129 LMPQACSGLLITLEYDQALLEGPPFSVPQTWLHRVMSG-NWEVTKVGGQD 177 (203)
T ss_dssp HSCSEEEEEEEEESSCSSSSSSCCCCCCHHHHHHTSCS-SEEEEEEEESS
T ss_pred HcCCCcEEEEEEEecCccccCCCCCCCCHHHHHHHhcC-CcEEEEecccc
Confidence 99999984443 22 23888999988 99987776553
No 58
>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A
Probab=99.66 E-value=5.8e-16 Score=129.23 Aligned_cols=139 Identities=12% Similarity=0.190 Sum_probs=106.7
Q ss_pred HHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHH
Q psy1420 32 KDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLR 111 (241)
Q Consensus 32 ~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~ 111 (241)
.+.+.+.+...++.+|||+|||+|.++ ..++. . .....++++|+++.+++
T Consensus 18 ~~~l~~~l~~~~~~~vLDiGcG~G~~~-------------~~l~~--------~---------~~~~~v~gvD~s~~~~~ 67 (217)
T 3jwh_A 18 MNGVVAALKQSNARRVIDLGCGQGNLL-------------KILLK--------D---------SFFEQITGVDVSYRSLE 67 (217)
T ss_dssp HHHHHHHHHHTTCCEEEEETCTTCHHH-------------HHHHH--------C---------TTCSEEEEEESCHHHHH
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCCHHH-------------HHHHh--------h---------CCCCEEEEEECCHHHHH
Confidence 344555555567789999999999988 33332 0 02358999999999999
Q ss_pred HHHHHHhcCCCccccccccceecceeeeeeccccCCCC---CCeeEEecccCCCCCCCCceeEEeeeehhhccccH--HH
Q psy1420 112 FLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPN---PRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRI--DK 186 (241)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~--~~ 186 (241)
.+++++. ..+++. .++++..+|+...+.+.++||+|++..++++++++ ..
T Consensus 68 ~a~~~~~-------------------------~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~ 122 (217)
T 3jwh_A 68 IAQERLD-------------------------RLRLPRNQWERLQLIQGALTYQDKRFHGYDAATVIEVIEHLDLSRLGA 122 (217)
T ss_dssp HHHHHHT-------------------------TCCCCHHHHTTEEEEECCTTSCCGGGCSCSEEEEESCGGGCCHHHHHH
T ss_pred HHHHHHH-------------------------HhcCCcccCcceEEEeCCcccccccCCCcCEEeeHHHHHcCCHHHHHH
Confidence 9999876 333320 26899999998777666799999999999999866 89
Q ss_pred HHHHHHHhccCCcEEEEEec------------------------CHHHHH----HHHHHCCCceEEE
Q psy1420 187 ALSEAYRVLKPGGRFLCLEF------------------------SHEEFK----SMIESAGFQYVTY 225 (241)
Q Consensus 187 ~l~~~~~~LkpgG~l~i~~~------------------------~~~~~~----~~l~~~Gf~~~~~ 225 (241)
+++++.++|||||.+++... +.+++. ++++++||+++..
T Consensus 123 ~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~Gf~v~~~ 189 (217)
T 3jwh_A 123 FERVLFEFAQPKIVIVTTPNIEYNVKFANLPAGKLRHKDHRFEWTRSQFQNWANKITERFAYNVQFQ 189 (217)
T ss_dssp HHHHHHTTTCCSEEEEEEEBHHHHHHTC-----------CCSCBCHHHHHHHHHHHHHHSSEEEEEC
T ss_pred HHHHHHHHcCCCEEEEEccCcccchhhcccccccccccccccccCHHHHHHHHHHHHHHcCceEEEE
Confidence 99999999999998776542 225555 8999999986543
No 59
>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A
Probab=99.66 E-value=1.5e-15 Score=132.48 Aligned_cols=130 Identities=18% Similarity=0.234 Sum_probs=107.5
Q ss_pred CCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhc
Q psy1420 40 GPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEE 119 (241)
Q Consensus 40 ~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~ 119 (241)
...++.+|||+|||+|.++ ..++. .. + ...+++++|+++.+++.+++++.
T Consensus 19 ~~~~~~~vLDiGcG~G~~~-------------~~l~~----~~---~---------~~~~v~gvD~s~~~~~~a~~~~~- 68 (284)
T 3gu3_A 19 KITKPVHIVDYGCGYGYLG-------------LVLMP----LL---P---------EGSKYTGIDSGETLLAEARELFR- 68 (284)
T ss_dssp CCCSCCEEEEETCTTTHHH-------------HHHTT----TS---C---------TTCEEEEEESCHHHHHHHHHHHH-
T ss_pred ccCCCCeEEEecCCCCHHH-------------HHHHH----hC---C---------CCCEEEEEECCHHHHHHHHHHHH-
Confidence 4567889999999999988 44433 10 0 24689999999999999999877
Q ss_pred CCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHHHHHHhccCCc
Q psy1420 120 LPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGG 199 (241)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG 199 (241)
..+ .++++..+|+.+.+. +++||+|++..++++++++..++++++++|||||
T Consensus 69 ------------------------~~~---~~v~~~~~d~~~~~~-~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG 120 (284)
T 3gu3_A 69 ------------------------LLP---YDSEFLEGDATEIEL-NDKYDIAICHAFLLHMTTPETMLQKMIHSVKKGG 120 (284)
T ss_dssp ------------------------SSS---SEEEEEESCTTTCCC-SSCEEEEEEESCGGGCSSHHHHHHHHHHTEEEEE
T ss_pred ------------------------hcC---CceEEEEcchhhcCc-CCCeeEEEECChhhcCCCHHHHHHHHHHHcCCCC
Confidence 222 268999999998877 4689999999999999999999999999999999
Q ss_pred EEEEEecCH-----------------------------------------HHHHHHHHHCCCceEEEEE
Q psy1420 200 RFLCLEFSH-----------------------------------------EEFKSMIESAGFQYVTYEN 227 (241)
Q Consensus 200 ~l~i~~~~~-----------------------------------------~~~~~~l~~~Gf~~~~~~~ 227 (241)
++++.+... .++.++++++||..++...
T Consensus 121 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGF~~v~~~~ 189 (284)
T 3gu3_A 121 KIICFEPHWISNMASYLLDGEKQSEFIQLGVLQKLFESDTQRNGKDGNIGMKIPIYLSELGVKNIECRV 189 (284)
T ss_dssp EEEEEECCHHHHHHSEEETTSCHHHHCCHHHHHHHHHHHHHHTCCCTTGGGTHHHHHHHTTCEEEEEEE
T ss_pred EEEEEecchhcccccceecCcchhhccchHHHHHHHHHHhhhhcccccHHHHHHHHHHHcCCCeEEEEE
Confidence 999988761 5678899999999887743
No 60
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*
Probab=99.66 E-value=1.9e-15 Score=134.61 Aligned_cols=144 Identities=13% Similarity=0.155 Sum_probs=114.6
Q ss_pred HhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHH
Q psy1420 36 IDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEA 115 (241)
Q Consensus 36 ~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~ 115 (241)
.+.++..+..+|||+|||+|..+ ..++. . . +..+++++|+ +.+++.+++
T Consensus 162 ~~~~~~~~~~~vlDvG~G~G~~~-------------~~l~~----~---~----------p~~~~~~~D~-~~~~~~a~~ 210 (332)
T 3i53_A 162 AAKYDWAALGHVVDVGGGSGGLL-------------SALLT----A---H----------EDLSGTVLDL-QGPASAAHR 210 (332)
T ss_dssp GGSSCCGGGSEEEEETCTTSHHH-------------HHHHH----H---C----------TTCEEEEEEC-HHHHHHHHH
T ss_pred HHhCCCCCCCEEEEeCCChhHHH-------------HHHHH----H---C----------CCCeEEEecC-HHHHHHHHH
Confidence 33444456789999999999888 44433 0 1 2457899999 999999998
Q ss_pred HHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccH--HHHHHHHHH
Q psy1420 116 NAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRI--DKALSEAYR 193 (241)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~--~~~l~~~~~ 193 (241)
++. +.++. +++++...|+. .+.+. +||+|++..++|++++. .++|+++++
T Consensus 211 ~~~-------------------------~~~~~-~~v~~~~~d~~-~~~p~-~~D~v~~~~vlh~~~~~~~~~~l~~~~~ 262 (332)
T 3i53_A 211 RFL-------------------------DTGLS-GRAQVVVGSFF-DPLPA-GAGGYVLSAVLHDWDDLSAVAILRRCAE 262 (332)
T ss_dssp HHH-------------------------HTTCT-TTEEEEECCTT-SCCCC-SCSEEEEESCGGGSCHHHHHHHHHHHHH
T ss_pred hhh-------------------------hcCcC-cCeEEecCCCC-CCCCC-CCcEEEEehhhccCCHHHHHHHHHHHHH
Confidence 877 55554 57999999997 44444 79999999999999886 799999999
Q ss_pred hccCCcEEEEEecC------------------------HHHHHHHHHHCCCceEEEEEecCceeEEEeeec
Q psy1420 194 VLKPGGRFLCLEFS------------------------HEEFKSMIESAGFQYVTYENLTFGVVAIHSGFK 240 (241)
Q Consensus 194 ~LkpgG~l~i~~~~------------------------~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~~ 240 (241)
.|+|||++++.+.. .+++.++++++||+.+++..... ..++.+++
T Consensus 263 ~L~pgG~l~i~e~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~--~~vie~r~ 331 (332)
T 3i53_A 263 AAGSGGVVLVIEAVAGDEHAGTGMDLRMLTYFGGKERSLAELGELAAQAGLAVRAAHPISY--VSIVEMTA 331 (332)
T ss_dssp HHTTTCEEEEEECCCC---CCHHHHHHHHHHHSCCCCCHHHHHHHHHHTTEEEEEEEECSS--SEEEEEEE
T ss_pred hcCCCCEEEEEeecCCCCCccHHHHHHHHhhCCCCCCCHHHHHHHHHHCCCEEEEEEECCC--cEEEEEee
Confidence 99999999997642 28899999999999999887754 66666665
No 61
>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}
Probab=99.66 E-value=1.3e-15 Score=135.13 Aligned_cols=150 Identities=15% Similarity=0.183 Sum_probs=116.9
Q ss_pred HHHHhhcCC--CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhH
Q psy1420 33 DIFIDRLGP--THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRL 110 (241)
Q Consensus 33 ~~~~~~l~~--~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~ 110 (241)
..+++.+.. .++.+|||+|||+|..+ ..++. . . +..+++++|++ .++
T Consensus 153 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~-------------~~l~~----~---~----------p~~~~~~~D~~-~~~ 201 (335)
T 2r3s_A 153 QLIAQLVNENKIEPLKVLDISASHGLFG-------------IAVAQ----H---N----------PNAEIFGVDWA-SVL 201 (335)
T ss_dssp HHHHHHHTC--CCCSEEEEETCTTCHHH-------------HHHHH----H---C----------TTCEEEEEECH-HHH
T ss_pred HHHHHhcccccCCCCEEEEECCCcCHHH-------------HHHHH----H---C----------CCCeEEEEecH-HHH
Confidence 345555565 67889999999999988 44433 1 0 24589999999 999
Q ss_pred HHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccH--HHHH
Q psy1420 111 RFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRI--DKAL 188 (241)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~--~~~l 188 (241)
+.+++++. +.++. +++++..+|+...+.+. .||+|++..+++++++. .+++
T Consensus 202 ~~a~~~~~-------------------------~~~~~-~~v~~~~~d~~~~~~~~-~~D~v~~~~~l~~~~~~~~~~~l 254 (335)
T 2r3s_A 202 EVAKENAR-------------------------IQGVA-SRYHTIAGSAFEVDYGN-DYDLVLLPNFLHHFDVATCEQLL 254 (335)
T ss_dssp HHHHHHHH-------------------------HHTCG-GGEEEEESCTTTSCCCS-CEEEEEEESCGGGSCHHHHHHHH
T ss_pred HHHHHHHH-------------------------hcCCC-cceEEEecccccCCCCC-CCcEEEEcchhccCCHHHHHHHH
Confidence 99998876 44444 46999999998876654 49999999999999544 7999
Q ss_pred HHHHHhccCCcEEEEEecC-----------------------------HHHHHHHHHHCCCceEEEEEecCceeEEEeee
Q psy1420 189 SEAYRVLKPGGRFLCLEFS-----------------------------HEEFKSMIESAGFQYVTYENLTFGVVAIHSGF 239 (241)
Q Consensus 189 ~~~~~~LkpgG~l~i~~~~-----------------------------~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~ 239 (241)
++++++|+|||++++.+.. .+++.++++++||+.+++.....+. .++.++
T Consensus 255 ~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~ll~~aGf~~~~~~~~~~~~-~~i~~~ 333 (335)
T 2r3s_A 255 RKIKTALAVEGKVIVFDFIPNSDRITPPDAAAFSLVMLATTPNGDAYTFAEYESMFSNAGFSHSQLHSLPTTQ-QQVIVA 333 (335)
T ss_dssp HHHHHHEEEEEEEEEEECCCCTTSSCSHHHHHHHHHHHHHSSSCCCCCHHHHHHHHHHTTCSEEEEECCTTSS-SEEEEE
T ss_pred HHHHHhCCCCcEEEEEeecCCCCcCCchHHHHHHHHHHeeCCCCCcCCHHHHHHHHHHCCCCeeeEEECCCCc-eeEEEe
Confidence 9999999999999987642 2789999999999999988775543 555565
Q ss_pred cC
Q psy1420 240 KL 241 (241)
Q Consensus 240 ~~ 241 (241)
+|
T Consensus 334 ~~ 335 (335)
T 2r3s_A 334 YK 335 (335)
T ss_dssp EC
T ss_pred cC
Confidence 54
No 62
>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}
Probab=99.65 E-value=9.9e-16 Score=131.92 Aligned_cols=143 Identities=13% Similarity=0.116 Sum_probs=112.5
Q ss_pred HHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChH--
Q psy1420 31 WKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNP-- 108 (241)
Q Consensus 31 ~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~-- 108 (241)
....+++.+...++.+|||+|||+|..+ ..++...| ...+++++|+|+.
T Consensus 31 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~-------------~~l~~~~g----------------~~~~v~gvD~s~~~~ 81 (275)
T 3bkx_A 31 HRLAIAEAWQVKPGEKILEIGCGQGDLS-------------AVLADQVG----------------SSGHVTGIDIASPDY 81 (275)
T ss_dssp HHHHHHHHHTCCTTCEEEEESCTTSHHH-------------HHHHHHHC----------------TTCEEEEECSSCTTC
T ss_pred HHHHHHHHcCCCCCCEEEEeCCCCCHHH-------------HHHHHHhC----------------CCCEEEEEECCcccc
Confidence 3456667777788999999999999988 44444110 2368999999997
Q ss_pred ----hHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecc---cCCCCCCCCceeEEeeeehhhcc
Q psy1420 109 ----RLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEAN---AEELPIESDSYSAYTIAFGIRNV 181 (241)
Q Consensus 109 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d---~~~~~~~~~~~D~V~~~~~l~~~ 181 (241)
+++.+++++. ..++. +++++...| ...+|+++++||+|++..+++++
T Consensus 82 ~~~~~~~~a~~~~~-------------------------~~~~~-~~v~~~~~d~~~~~~~~~~~~~fD~v~~~~~l~~~ 135 (275)
T 3bkx_A 82 GAPLTLGQAWNHLL-------------------------AGPLG-DRLTVHFNTNLSDDLGPIADQHFDRVVLAHSLWYF 135 (275)
T ss_dssp CSSSCHHHHHHHHH-------------------------TSTTG-GGEEEECSCCTTTCCGGGTTCCCSEEEEESCGGGS
T ss_pred ccHHHHHHHHHHHH-------------------------hcCCC-CceEEEECChhhhccCCCCCCCEEEEEEccchhhC
Confidence 9999998887 44443 468899988 44556667899999999999999
Q ss_pred ccHHHHHHHHHHhccCCcEEEEEecC-------------------------------------HHHHHHHHHHCCCceEE
Q psy1420 182 TRIDKALSEAYRVLKPGGRFLCLEFS-------------------------------------HEEFKSMIESAGFQYVT 224 (241)
Q Consensus 182 ~~~~~~l~~~~~~LkpgG~l~i~~~~-------------------------------------~~~~~~~l~~~Gf~~~~ 224 (241)
+++..+++.+.++++|||++++.++. .+++.++++++||++++
T Consensus 136 ~~~~~~~~~~~~l~~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~l~~aGf~~~~ 215 (275)
T 3bkx_A 136 ASANALALLFKNMAAVCDHVDVAEWSMQPTALDQIGHLQAAMIQGLLYAIAPSDVANIRTLITPDTLAQIAHDNTWTYTA 215 (275)
T ss_dssp SCHHHHHHHHHHHTTTCSEEEEEEECSSCSSGGGHHHHHHHHHHHHHHHHSCCTTCSCCCCCCHHHHHHHHHHHTCEEEE
T ss_pred CCHHHHHHHHHHHhCCCCEEEEEEecCCCCchhhhhHHHHHHHHHHHhhccccccccccccCCHHHHHHHHHHCCCeeEE
Confidence 99998888888888889999986522 16889999999999988
Q ss_pred EEEe
Q psy1420 225 YENL 228 (241)
Q Consensus 225 ~~~~ 228 (241)
...+
T Consensus 216 ~~~~ 219 (275)
T 3bkx_A 216 GTIV 219 (275)
T ss_dssp CCCB
T ss_pred EEEe
Confidence 7765
No 63
>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*
Probab=99.65 E-value=4.2e-16 Score=142.85 Aligned_cols=150 Identities=12% Similarity=0.087 Sum_probs=115.4
Q ss_pred HHHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHh
Q psy1420 30 LWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPR 109 (241)
Q Consensus 30 ~~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~ 109 (241)
...+.+++.+...++.+|||+|||+|.++ ..+.. ....++++|+|+.+
T Consensus 94 ~~~~~l~~~~~~~~~~~VLDiGcG~G~~~-------------~~l~~-------------------~g~~v~gvD~s~~~ 141 (416)
T 4e2x_A 94 MLARDFLATELTGPDPFIVEIGCNDGIML-------------RTIQE-------------------AGVRHLGFEPSSGV 141 (416)
T ss_dssp HHHHHHHHTTTCSSSCEEEEETCTTTTTH-------------HHHHH-------------------TTCEEEEECCCHHH
T ss_pred HHHHHHHHHhCCCCCCEEEEecCCCCHHH-------------HHHHH-------------------cCCcEEEECCCHHH
Confidence 34566677777778889999999999988 44444 34589999999999
Q ss_pred HHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHH
Q psy1420 110 LRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALS 189 (241)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~ 189 (241)
++.++++-. +.....+...+...++.++++||+|++..+++|++++..+++
T Consensus 142 ~~~a~~~~~-----------------------------~~~~~~~~~~~~~~l~~~~~~fD~I~~~~vl~h~~d~~~~l~ 192 (416)
T 4e2x_A 142 AAKAREKGI-----------------------------RVRTDFFEKATADDVRRTEGPANVIYAANTLCHIPYVQSVLE 192 (416)
T ss_dssp HHHHHTTTC-----------------------------CEECSCCSHHHHHHHHHHHCCEEEEEEESCGGGCTTHHHHHH
T ss_pred HHHHHHcCC-----------------------------CcceeeechhhHhhcccCCCCEEEEEECChHHhcCCHHHHHH
Confidence 998875411 100111223444455555688999999999999999999999
Q ss_pred HHHHhccCCcEEEEEecC----------------------HHHHHHHHHHCCCceEEEEEec--CceeEEEeeec
Q psy1420 190 EAYRVLKPGGRFLCLEFS----------------------HEEFKSMIESAGFQYVTYENLT--FGVVAIHSGFK 240 (241)
Q Consensus 190 ~~~~~LkpgG~l~i~~~~----------------------~~~~~~~l~~~Gf~~~~~~~~~--~~~~~~~~~~~ 240 (241)
+++++|||||++++.... .+++.++++++||++++..... .|...++.+++
T Consensus 193 ~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~aGf~~~~~~~~~~~~g~l~~~~~~~ 267 (416)
T 4e2x_A 193 GVDALLAPDGVFVFEDPYLGDIVAKTSFDQIFDEHFFLFSATSVQGMAQRCGFELVDVQRLPVHGGEVRYTLARQ 267 (416)
T ss_dssp HHHHHEEEEEEEEEEEECHHHHHHHTCGGGCSTTCCEECCHHHHHHHHHHTTEEEEEEEEECGGGSEEEEEEEET
T ss_pred HHHHHcCCCeEEEEEeCChHHhhhhcchhhhhhhhhhcCCHHHHHHHHHHcCCEEEEEEEccCCCCEEEEEEEeC
Confidence 999999999999987533 1789999999999999999864 67777666543
No 64
>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}
Probab=99.65 E-value=6.7e-16 Score=128.53 Aligned_cols=158 Identities=21% Similarity=0.244 Sum_probs=112.9
Q ss_pred hHHHHHhhhhhccccchhhhhhhh---HHHHHHHHHhhcC-CCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhh
Q psy1420 4 PMYEVFENVAKSYDTMNDAMSFGI---HRLWKDIFIDRLG-PTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMG 79 (241)
Q Consensus 4 ~~~~~f~~~~~~yd~~~~~~~~~~---~~~~~~~~~~~l~-~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~ 79 (241)
...++|+..+..|+.......... .....+.+.+.+. ..++.+|||+|||+|..+ ..+
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vLDiG~G~G~~~-------------~~l----- 85 (215)
T 2zfu_A 24 AAQRLFQEDPEAFLLYHRGFQSQVKKWPLQPVDRIARDLRQRPASLVVADFGCGDCRLA-------------SSI----- 85 (215)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHTSCTTSCEEEETCTTCHHH-------------HHC-----
T ss_pred HHHHHHHHhHHHHHHHHHHHHhhhcccchhHHHHHHHHHhccCCCCeEEEECCcCCHHH-------------HHh-----
Confidence 455677777777776543322210 0101122333332 356789999999999987 211
Q ss_pred hhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEeccc
Q psy1420 80 QLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANA 159 (241)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 159 (241)
...++++|+++. . +.+..+|+
T Consensus 86 -----------------~~~v~~~D~s~~---------~---------------------------------~~~~~~d~ 106 (215)
T 2zfu_A 86 -----------------RNPVHCFDLASL---------D---------------------------------PRVTVCDM 106 (215)
T ss_dssp -----------------CSCEEEEESSCS---------S---------------------------------TTEEESCT
T ss_pred -----------------hccEEEEeCCCC---------C---------------------------------ceEEEecc
Confidence 246899999876 2 34678888
Q ss_pred CCCCCCCCceeEEeeeehhhccccHHHHHHHHHHhccCCcEEEEEecCH-----HHHHHHHHHCCCceEEEEEecCceeE
Q psy1420 160 EELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH-----EEFKSMIESAGFQYVTYENLTFGVVA 234 (241)
Q Consensus 160 ~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~-----~~~~~~l~~~Gf~~~~~~~~~~~~~~ 234 (241)
..++.+.++||+|++..++| ..++..+++++.++|+|||++++.++.. +++.++++++||+++.... ..+...
T Consensus 107 ~~~~~~~~~fD~v~~~~~l~-~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~-~~~~~~ 184 (215)
T 2zfu_A 107 AQVPLEDESVDVAVFCLSLM-GTNIRDFLEEANRVLKPGGLLKVAEVSSRFEDVRTFLRAVTKLGFKIVSKDL-TNSHFF 184 (215)
T ss_dssp TSCSCCTTCEEEEEEESCCC-SSCHHHHHHHHHHHEEEEEEEEEEECGGGCSCHHHHHHHHHHTTEEEEEEEC-CSTTCE
T ss_pred ccCCCCCCCEeEEEEehhcc-ccCHHHHHHHHHHhCCCCeEEEEEEcCCCCCCHHHHHHHHHHCCCEEEEEec-CCCeEE
Confidence 88887778999999999997 4899999999999999999999987544 8999999999999887554 344445
Q ss_pred EEeeec
Q psy1420 235 IHSGFK 240 (241)
Q Consensus 235 ~~~~~~ 240 (241)
+++++|
T Consensus 185 ~~~~~k 190 (215)
T 2zfu_A 185 LFDFQK 190 (215)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 555555
No 65
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}
Probab=99.65 E-value=1.8e-15 Score=135.51 Aligned_cols=148 Identities=18% Similarity=0.227 Sum_probs=117.3
Q ss_pred HHHhhcCCCC-CCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHH
Q psy1420 34 IFIDRLGPTH-DTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRF 112 (241)
Q Consensus 34 ~~~~~l~~~~-~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~ 112 (241)
.+++.++..+ +.+|||+|||+|.++ ..++. . . +..+++++|+ +.+++.
T Consensus 169 ~~l~~~~~~~~~~~vlDvG~G~G~~~-------------~~l~~----~---~----------p~~~~~~~D~-~~~~~~ 217 (352)
T 3mcz_A 169 DVVSELGVFARARTVIDLAGGHGTYL-------------AQVLR----R---H----------PQLTGQIWDL-PTTRDA 217 (352)
T ss_dssp HHHHTCGGGTTCCEEEEETCTTCHHH-------------HHHHH----H---C----------TTCEEEEEEC-GGGHHH
T ss_pred HHHHhCCCcCCCCEEEEeCCCcCHHH-------------HHHHH----h---C----------CCCeEEEEEC-HHHHHH
Confidence 4555555555 789999999999988 44443 1 0 2467899999 889999
Q ss_pred HHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCC-CCCceeEEeeeehhhccccH--HHHHH
Q psy1420 113 LEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPI-ESDSYSAYTIAFGIRNVTRI--DKALS 189 (241)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~D~V~~~~~l~~~~~~--~~~l~ 189 (241)
++++.. +.++. +++++..+|+...+. ..++||+|++..++|++++. .++++
T Consensus 218 a~~~~~-------------------------~~~~~-~~v~~~~~d~~~~~~~~~~~~D~v~~~~vlh~~~~~~~~~~l~ 271 (352)
T 3mcz_A 218 ARKTIH-------------------------AHDLG-GRVEFFEKNLLDARNFEGGAADVVMLNDCLHYFDAREAREVIG 271 (352)
T ss_dssp HHHHHH-------------------------HTTCG-GGEEEEECCTTCGGGGTTCCEEEEEEESCGGGSCHHHHHHHHH
T ss_pred HHHHHH-------------------------hcCCC-CceEEEeCCcccCcccCCCCccEEEEecccccCCHHHHHHHHH
Confidence 998877 44444 479999999988751 34569999999999999876 89999
Q ss_pred HHHHhccCCcEEEEEecC-----------------------------HHHHHHHHHHCCCceEEEEEecCceeEEEeeec
Q psy1420 190 EAYRVLKPGGRFLCLEFS-----------------------------HEEFKSMIESAGFQYVTYENLTFGVVAIHSGFK 240 (241)
Q Consensus 190 ~~~~~LkpgG~l~i~~~~-----------------------------~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~~ 240 (241)
++++.|||||++++.+.. .++++++++++||++++.. .|...+++++|
T Consensus 272 ~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~---~g~~~l~~a~k 348 (352)
T 3mcz_A 272 HAAGLVKPGGALLILTMTMNDDRVTPALSADFSLHMMVNTNHGELHPTPWIAGVVRDAGLAVGERS---IGRYTLLIGQR 348 (352)
T ss_dssp HHHHTEEEEEEEEEEEECCCTTSSSSHHHHHHHHHHHHHSTTCCCCCHHHHHHHHHHTTCEEEEEE---ETTEEEEEEEC
T ss_pred HHHHHcCCCCEEEEEEeccCCCCCCCchHHHhhHHHHhhCCCCCcCCHHHHHHHHHHCCCceeeec---cCceEEEEEec
Confidence 999999999999997632 1789999999999998843 46688889988
Q ss_pred C
Q psy1420 241 L 241 (241)
Q Consensus 241 ~ 241 (241)
|
T Consensus 349 p 349 (352)
T 3mcz_A 349 S 349 (352)
T ss_dssp C
T ss_pred C
Confidence 7
No 66
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}
Probab=99.64 E-value=2.8e-15 Score=133.28 Aligned_cols=148 Identities=14% Similarity=0.180 Sum_probs=115.5
Q ss_pred HHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHH
Q psy1420 32 KDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLR 111 (241)
Q Consensus 32 ~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~ 111 (241)
...+.+.++..+ .+|||+|||+|..+ ..++. . . +..+++++|+ +.+++
T Consensus 157 ~~~~~~~~~~~~-~~vlDvG~G~G~~~-------------~~l~~----~---~----------p~~~~~~~D~-~~~~~ 204 (334)
T 2ip2_A 157 FHEIPRLLDFRG-RSFVDVGGGSGELT-------------KAILQ----A---E----------PSARGVMLDR-EGSLG 204 (334)
T ss_dssp HHHHHHHSCCTT-CEEEEETCTTCHHH-------------HHHHH----H---C----------TTCEEEEEEC-TTCTH
T ss_pred HHHHHHhCCCCC-CEEEEeCCCchHHH-------------HHHHH----H---C----------CCCEEEEeCc-HHHHH
Confidence 345555556556 89999999999988 44433 0 0 2457999999 99999
Q ss_pred HHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHH--HHHH
Q psy1420 112 FLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRID--KALS 189 (241)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~--~~l~ 189 (241)
.+++++. +.++. +++++...|+.+ +.+ .+||+|++..++|++++.. ++++
T Consensus 205 ~a~~~~~-------------------------~~~~~-~~v~~~~~d~~~-~~~-~~~D~v~~~~vl~~~~~~~~~~~l~ 256 (334)
T 2ip2_A 205 VARDNLS-------------------------SLLAG-ERVSLVGGDMLQ-EVP-SNGDIYLLSRIIGDLDEAASLRLLG 256 (334)
T ss_dssp HHHHHTH-------------------------HHHHT-TSEEEEESCTTT-CCC-SSCSEEEEESCGGGCCHHHHHHHHH
T ss_pred HHHHHHh-------------------------hcCCC-CcEEEecCCCCC-CCC-CCCCEEEEchhccCCCHHHHHHHHH
Confidence 9988765 33333 478999999887 444 6799999999999988776 9999
Q ss_pred HHHHhccCCcEEEEEecC---------------------------HHHHHHHHHHCCCceEEEEEecCceeEEEeeec
Q psy1420 190 EAYRVLKPGGRFLCLEFS---------------------------HEEFKSMIESAGFQYVTYENLTFGVVAIHSGFK 240 (241)
Q Consensus 190 ~~~~~LkpgG~l~i~~~~---------------------------~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~~ 240 (241)
++++.|+|||++++.+.. .+++.++++++||+.+++.... +...++.++|
T Consensus 257 ~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~-~~~~~i~~~~ 333 (334)
T 2ip2_A 257 NCREAMAGDGRVVVIERTISASEPSPMSVLWDVHLFMACAGRHRTTEEVVDLLGRGGFAVERIVDLP-METRMIVAAR 333 (334)
T ss_dssp HHHHHSCTTCEEEEEECCBCSSSCCHHHHHHHHHHHHHHSCCCCBHHHHHHHHHHTTEEEEEEEEET-TTEEEEEEEE
T ss_pred HHHHhcCCCCEEEEEEeccCCCCCcchhHHhhhHhHhhCCCcCCCHHHHHHHHHHCCCceeEEEECC-CCCEEEEEEe
Confidence 999999999999998632 1789999999999999988764 4466777765
No 67
>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A
Probab=99.64 E-value=1.1e-15 Score=127.47 Aligned_cols=138 Identities=13% Similarity=0.173 Sum_probs=104.9
Q ss_pred HHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHH
Q psy1420 33 DIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRF 112 (241)
Q Consensus 33 ~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~ 112 (241)
+.+.+.+...++.+|||+|||+|.++ ..+.. . ....+++++|+++.+++.
T Consensus 19 ~~l~~~l~~~~~~~vLDiGcG~G~~~-------------~~l~~--------~---------~~~~~v~gvD~s~~~~~~ 68 (219)
T 3jwg_A 19 GTVVAVLKSVNAKKVIDLGCGEGNLL-------------SLLLK--------D---------KSFEQITGVDVSYSVLER 68 (219)
T ss_dssp HHHHHHHHHTTCCEEEEETCTTCHHH-------------HHHHT--------S---------TTCCEEEEEESCHHHHHH
T ss_pred HHHHHHHhhcCCCEEEEecCCCCHHH-------------HHHHh--------c---------CCCCEEEEEECCHHHHHH
Confidence 44444444467789999999999988 33333 0 023689999999999999
Q ss_pred HHHHHhcCCCccccccccceecceeeeeeccccCCCC---CCeeEEecccCCCCCCCCceeEEeeeehhhccccH--HHH
Q psy1420 113 LEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPN---PRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRI--DKA 187 (241)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~--~~~ 187 (241)
+++++. ..+++. .++++..+|+...+.+.++||+|++..++++++++ .++
T Consensus 69 a~~~~~-------------------------~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~ 123 (219)
T 3jwg_A 69 AKDRLK-------------------------IDRLPEMQRKRISLFQSSLVYRDKRFSGYDAATVIEVIEHLDENRLQAF 123 (219)
T ss_dssp HHHHHT-------------------------GGGSCHHHHTTEEEEECCSSSCCGGGTTCSEEEEESCGGGCCHHHHHHH
T ss_pred HHHHHH-------------------------hhccccccCcceEEEeCcccccccccCCCCEEEEHHHHHhCCHHHHHHH
Confidence 998876 333320 26899999998877767899999999999999866 799
Q ss_pred HHHHHHhccCCcEEEEEec------------------------CHHHHH----HHHHHCCCceEEE
Q psy1420 188 LSEAYRVLKPGGRFLCLEF------------------------SHEEFK----SMIESAGFQYVTY 225 (241)
Q Consensus 188 l~~~~~~LkpgG~l~i~~~------------------------~~~~~~----~~l~~~Gf~~~~~ 225 (241)
++++.++|||||.++.... +.+++. ++++++||++...
T Consensus 124 l~~~~~~LkpgG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~Gf~v~~~ 189 (219)
T 3jwg_A 124 EKVLFEFTRPQTVIVSTPNKEYNFHYGNLFEGNLRHRDHRFEWTRKEFQTWAVKVAEKYGYSVRFL 189 (219)
T ss_dssp HHHHHTTTCCSEEEEEEEBGGGGGCCCCT-----GGGCCTTSBCHHHHHHHHHHHHHHHTEEEEEE
T ss_pred HHHHHHhhCCCEEEEEccchhhhhhhcccCcccccccCceeeecHHHHHHHHHHHHHHCCcEEEEE
Confidence 9999999999997766432 225565 8899999976544
No 68
>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*
Probab=99.64 E-value=2.7e-15 Score=124.76 Aligned_cols=116 Identities=9% Similarity=0.165 Sum_probs=95.0
Q ss_pred HHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhH
Q psy1420 31 WKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRL 110 (241)
Q Consensus 31 ~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~ 110 (241)
....+...+...++.+|||+|||+|..+ ..++. ....++++|+++.++
T Consensus 39 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~-------------~~l~~-------------------~~~~v~~vD~s~~~~ 86 (216)
T 3ofk_A 39 HTQLLRLSLSSGAVSNGLEIGCAAGAFT-------------EKLAP-------------------HCKRLTVIDVMPRAI 86 (216)
T ss_dssp HHHHHHHHTTTSSEEEEEEECCTTSHHH-------------HHHGG-------------------GEEEEEEEESCHHHH
T ss_pred HHHHHHHHcccCCCCcEEEEcCCCCHHH-------------HHHHH-------------------cCCEEEEEECCHHHH
Confidence 3444555666778889999999999988 44444 235799999999999
Q ss_pred HHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccH---HHH
Q psy1420 111 RFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRI---DKA 187 (241)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~---~~~ 187 (241)
+.++++.. .. +++++.++|+...+ +.++||+|++..++++++++ .++
T Consensus 87 ~~a~~~~~-------------------------~~----~~~~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~~~~~~~~~ 136 (216)
T 3ofk_A 87 GRACQRTK-------------------------RW----SHISWAATDILQFS-TAELFDLIVVAEVLYYLEDMTQMRTA 136 (216)
T ss_dssp HHHHHHTT-------------------------TC----SSEEEEECCTTTCC-CSCCEEEEEEESCGGGSSSHHHHHHH
T ss_pred HHHHHhcc-------------------------cC----CCeEEEEcchhhCC-CCCCccEEEEccHHHhCCCHHHHHHH
Confidence 99998876 21 36899999999887 56899999999999999987 577
Q ss_pred HHHHHHhccCCcEEEEEecCH
Q psy1420 188 LSEAYRVLKPGGRFLCLEFSH 208 (241)
Q Consensus 188 l~~~~~~LkpgG~l~i~~~~~ 208 (241)
++++.++|||||++++.+...
T Consensus 137 l~~~~~~L~pgG~l~~~~~~~ 157 (216)
T 3ofk_A 137 IDNMVKMLAPGGHLVFGSARD 157 (216)
T ss_dssp HHHHHHTEEEEEEEEEEEECH
T ss_pred HHHHHHHcCCCCEEEEEecCC
Confidence 999999999999999976544
No 69
>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=99.64 E-value=1.8e-15 Score=122.63 Aligned_cols=123 Identities=14% Similarity=0.105 Sum_probs=101.4
Q ss_pred CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCC
Q psy1420 42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP 121 (241)
Q Consensus 42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~ 121 (241)
+++.+|||+|||+|..+ ..+.. ....++++|+++.+++.++++..
T Consensus 45 ~~~~~vLdiG~G~G~~~-------------~~l~~-------------------~~~~v~~~D~~~~~~~~a~~~~~--- 89 (195)
T 3cgg_A 45 PRGAKILDAGCGQGRIG-------------GYLSK-------------------QGHDVLGTDLDPILIDYAKQDFP--- 89 (195)
T ss_dssp CTTCEEEEETCTTTHHH-------------HHHHH-------------------TTCEEEEEESCHHHHHHHHHHCT---
T ss_pred cCCCeEEEECCCCCHHH-------------HHHHH-------------------CCCcEEEEcCCHHHHHHHHHhCC---
Confidence 57789999999999988 44443 24579999999999999987654
Q ss_pred CccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeee-ehhhcc--ccHHHHHHHHHHhccCC
Q psy1420 122 IESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIA-FGIRNV--TRIDKALSEAYRVLKPG 198 (241)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~-~~l~~~--~~~~~~l~~~~~~Lkpg 198 (241)
++.+...|+...+.+.++||+|++. ..++++ ++...+++++.++|+||
T Consensus 90 -----------------------------~~~~~~~d~~~~~~~~~~~D~i~~~~~~~~~~~~~~~~~~l~~~~~~l~~~ 140 (195)
T 3cgg_A 90 -----------------------------EARWVVGDLSVDQISETDFDLIVSAGNVMGFLAEDGREPALANIHRALGAD 140 (195)
T ss_dssp -----------------------------TSEEEECCTTTSCCCCCCEEEEEECCCCGGGSCHHHHHHHHHHHHHHEEEE
T ss_pred -----------------------------CCcEEEcccccCCCCCCceeEEEECCcHHhhcChHHHHHHHHHHHHHhCCC
Confidence 4778899998887777899999998 677776 44589999999999999
Q ss_pred cEEEEEec-----CHHHHHHHHHHCCCceEEEEEe
Q psy1420 199 GRFLCLEF-----SHEEFKSMIESAGFQYVTYENL 228 (241)
Q Consensus 199 G~l~i~~~-----~~~~~~~~l~~~Gf~~~~~~~~ 228 (241)
|++++... +.+++.++++++||.+++....
T Consensus 141 G~l~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~ 175 (195)
T 3cgg_A 141 GRAVIGFGAGRGWVFGDFLEVAERVGLELENAFES 175 (195)
T ss_dssp EEEEEEEETTSSCCHHHHHHHHHHHTEEEEEEESS
T ss_pred CEEEEEeCCCCCcCHHHHHHHHHHcCCEEeeeecc
Confidence 99998653 3489999999999998877544
No 70
>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41
Probab=99.64 E-value=1.4e-15 Score=130.62 Aligned_cols=141 Identities=26% Similarity=0.367 Sum_probs=106.4
Q ss_pred CcchHHHHHhhhhhccccchhhhhh-hhHHHHHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhh
Q psy1420 1 MKLPMYEVFENVAKSYDTMNDAMSF-GIHRLWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMG 79 (241)
Q Consensus 1 ~~~~~~~~f~~~~~~yd~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~ 79 (241)
|+......|+.+++.|+.+...... .......+.+.+.+. ++.+|||+|||+|..+ ..+..
T Consensus 13 ~~~~~~~~~~~~a~~Yd~~~~~~~~~~~~~~~~~~l~~~~~--~~~~vLDiGcG~G~~~-------------~~l~~--- 74 (260)
T 2avn_A 13 MKLRSWEFYDRIARAYDSMYETPKWKLYHRLIGSFLEEYLK--NPCRVLDLGGGTGKWS-------------LFLQE--- 74 (260)
T ss_dssp EECCHHHHHHHHHHHHGGGGCSHHHHHHHHHHHHHHHHHCC--SCCEEEEETCTTCHHH-------------HHHHT---
T ss_pred hhhhhcchhhHHHHHHHHhccccchhHHHHHHHHHHHHhcC--CCCeEEEeCCCcCHHH-------------HHHHH---
Confidence 3567788999999999987532211 112223344444443 6779999999999988 44443
Q ss_pred hhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEeccc
Q psy1420 80 QLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANA 159 (241)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 159 (241)
....++++|+++.+++.++++.. . .+..+|+
T Consensus 75 ----------------~~~~v~gvD~s~~~l~~a~~~~~-------------------------------~--~~~~~d~ 105 (260)
T 2avn_A 75 ----------------RGFEVVLVDPSKEMLEVAREKGV-------------------------------K--NVVEAKA 105 (260)
T ss_dssp ----------------TTCEEEEEESCHHHHHHHHHHTC-------------------------------S--CEEECCT
T ss_pred ----------------cCCeEEEEeCCHHHHHHHHhhcC-------------------------------C--CEEECcH
Confidence 24579999999999999987653 1 2678888
Q ss_pred CCCCCCCCceeEEeeeehhhcc-ccHHHHHHHHHHhccCCcEEEEEecCH
Q psy1420 160 EELPIESDSYSAYTIAFGIRNV-TRIDKALSEAYRVLKPGGRFLCLEFSH 208 (241)
Q Consensus 160 ~~~~~~~~~~D~V~~~~~l~~~-~~~~~~l~~~~~~LkpgG~l~i~~~~~ 208 (241)
..++.++++||+|++..++.++ +++..+++++.++|||||++++...+.
T Consensus 106 ~~~~~~~~~fD~v~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 155 (260)
T 2avn_A 106 EDLPFPSGAFEAVLALGDVLSYVENKDKAFSEIRRVLVPDGLLIATVDNF 155 (260)
T ss_dssp TSCCSCTTCEEEEEECSSHHHHCSCHHHHHHHHHHHEEEEEEEEEEEEBH
T ss_pred HHCCCCCCCEEEEEEcchhhhccccHHHHHHHHHHHcCCCeEEEEEeCCh
Confidence 8888777899999998766554 789999999999999999999987765
No 71
>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*
Probab=99.64 E-value=4.4e-15 Score=130.12 Aligned_cols=139 Identities=15% Similarity=0.301 Sum_probs=108.5
Q ss_pred HHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHH
Q psy1420 32 KDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLR 111 (241)
Q Consensus 32 ~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~ 111 (241)
...+++.+...++ +|||+|||+|..+ ..++. ....++++|+++.+++
T Consensus 72 ~~~~~~~~~~~~~-~vLDlGcG~G~~~-------------~~l~~-------------------~~~~v~gvD~s~~~~~ 118 (299)
T 3g2m_A 72 AREFATRTGPVSG-PVLELAAGMGRLT-------------FPFLD-------------------LGWEVTALELSTSVLA 118 (299)
T ss_dssp HHHHHHHHCCCCS-CEEEETCTTTTTH-------------HHHHT-------------------TTCCEEEEESCHHHHH
T ss_pred HHHHHHhhCCCCC-cEEEEeccCCHHH-------------HHHHH-------------------cCCeEEEEECCHHHHH
Confidence 4455555554444 9999999999998 44444 3467999999999999
Q ss_pred HHHHHHhcCCCccccccccceecceeeeeeccccCCC-CCCeeEEecccCCCCCCCCceeEEeee-ehhhccc--cHHHH
Q psy1420 112 FLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIP-NPRLRFLEANAEELPIESDSYSAYTIA-FGIRNVT--RIDKA 187 (241)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~D~V~~~-~~l~~~~--~~~~~ 187 (241)
.+++++. ..+.. ..+++++++|+..++. .++||+|++. .++++.+ +...+
T Consensus 119 ~a~~~~~-------------------------~~~~~~~~~v~~~~~d~~~~~~-~~~fD~v~~~~~~~~~~~~~~~~~~ 172 (299)
T 3g2m_A 119 AFRKRLA-------------------------EAPADVRDRCTLVQGDMSAFAL-DKRFGTVVISSGSINELDEADRRGL 172 (299)
T ss_dssp HHHHHHH-------------------------TSCHHHHTTEEEEECBTTBCCC-SCCEEEEEECHHHHTTSCHHHHHHH
T ss_pred HHHHHHh-------------------------hcccccccceEEEeCchhcCCc-CCCcCEEEECCcccccCCHHHHHHH
Confidence 9999887 32210 0258999999999887 6789999876 4455554 35899
Q ss_pred HHHHHHhccCCcEEEEEec-------------------------------------------------------------
Q psy1420 188 LSEAYRVLKPGGRFLCLEF------------------------------------------------------------- 206 (241)
Q Consensus 188 l~~~~~~LkpgG~l~i~~~------------------------------------------------------------- 206 (241)
|+++.++|||||+|++..+
T Consensus 173 l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (299)
T 3g2m_A 173 YASVREHLEPGGKFLLSLAMSEAAESEPLERKQELPGRSGRRYVLHVRHLPAEEIQEITIHPADETTDPFVVCTHRRRLL 252 (299)
T ss_dssp HHHHHHHEEEEEEEEEEEECCHHHHSCCCCC-------------CCEEEEEEEEEEEEEEEESCC--CCCCEEEEEEEEE
T ss_pred HHHHHHHcCCCcEEEEEeecCccccccchhccceeecCCCcEEEEEEEEeccccEEEEEEEeccCCCCcEEEEEEEEEEe
Confidence 9999999999999988541
Q ss_pred CHHHHHHHHHHCCCceEEEEEec
Q psy1420 207 SHEEFKSMIESAGFQYVTYENLT 229 (241)
Q Consensus 207 ~~~~~~~~l~~~Gf~~~~~~~~~ 229 (241)
+.+++.++++++||++++...+.
T Consensus 253 t~~el~~ll~~aGF~v~~~~~~~ 275 (299)
T 3g2m_A 253 APDQVVRELVRSGFDVIAQTPFA 275 (299)
T ss_dssp CHHHHHHHHHHTTCEEEEEEEEC
T ss_pred CHHHHHHHHHHCCCEEEEEEecC
Confidence 34789999999999999999885
No 72
>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*
Probab=99.63 E-value=4.9e-15 Score=133.54 Aligned_cols=149 Identities=17% Similarity=0.203 Sum_probs=115.8
Q ss_pred HHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHH
Q psy1420 33 DIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRF 112 (241)
Q Consensus 33 ~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~ 112 (241)
+.+.+.+...++.+|||+|||+|..+ ..++. . .+...++++|+ +.+++.
T Consensus 172 ~~~~~~~~~~~~~~vlDvG~G~G~~~-------------~~l~~----~-------------~~~~~~~~~D~-~~~~~~ 220 (374)
T 1qzz_A 172 EAPADAYDWSAVRHVLDVGGGNGGML-------------AAIAL----R-------------APHLRGTLVEL-AGPAER 220 (374)
T ss_dssp HHHHHTSCCTTCCEEEEETCTTSHHH-------------HHHHH----H-------------CTTCEEEEEEC-HHHHHH
T ss_pred HHHHHhCCCCCCCEEEEECCCcCHHH-------------HHHHH----H-------------CCCCEEEEEeC-HHHHHH
Confidence 44556666677889999999999988 44433 1 02457999999 999999
Q ss_pred HHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHH--HHHHH
Q psy1420 113 LEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRID--KALSE 190 (241)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~--~~l~~ 190 (241)
+++++. +.++. +++++..+|+.+ +.+. .||+|++..++|++++.. +++++
T Consensus 221 a~~~~~-------------------------~~~~~-~~v~~~~~d~~~-~~~~-~~D~v~~~~vl~~~~~~~~~~~l~~ 272 (374)
T 1qzz_A 221 ARRRFA-------------------------DAGLA-DRVTVAEGDFFK-PLPV-TADVVLLSFVLLNWSDEDALTILRG 272 (374)
T ss_dssp HHHHHH-------------------------HTTCT-TTEEEEECCTTS-CCSC-CEEEEEEESCGGGSCHHHHHHHHHH
T ss_pred HHHHHH-------------------------hcCCC-CceEEEeCCCCC-cCCC-CCCEEEEeccccCCCHHHHHHHHHH
Confidence 998887 44544 479999999875 3333 499999999999998875 89999
Q ss_pred HHHhccCCcEEEEEec--C---------------------------HHHHHHHHHHCCCceEEEEEecCce----eEEEe
Q psy1420 191 AYRVLKPGGRFLCLEF--S---------------------------HEEFKSMIESAGFQYVTYENLTFGV----VAIHS 237 (241)
Q Consensus 191 ~~~~LkpgG~l~i~~~--~---------------------------~~~~~~~l~~~Gf~~~~~~~~~~~~----~~~~~ 237 (241)
++++|||||++++.+. . .+++.++++++||+++++....... ..++.
T Consensus 273 ~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~~~~~~~~~~~~~~~~~~i~ 352 (374)
T 1qzz_A 273 CVRALEPGGRLLVLDRADVEGDGADRFFSTLLDLRMLTFMGGRVRTRDEVVDLAGSAGLALASERTSGSTTLPFDFSILE 352 (374)
T ss_dssp HHHHEEEEEEEEEEECCH-------HHHHHHHHHHHHHHHSCCCCCHHHHHHHHHTTTEEEEEEEEECCSSCSSCEEEEE
T ss_pred HHHhcCCCcEEEEEechhhcCCCCCcchhhhcchHHHHhCCCcCCCHHHHHHHHHHCCCceEEEEECCCCcccCCcEEEE
Confidence 9999999999998876 2 2788999999999999988775332 15556
Q ss_pred eec
Q psy1420 238 GFK 240 (241)
Q Consensus 238 ~~~ 240 (241)
++|
T Consensus 353 ~~~ 355 (374)
T 1qzz_A 353 FTA 355 (374)
T ss_dssp EEE
T ss_pred EEE
Confidence 554
No 73
>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0
Probab=99.63 E-value=1.1e-14 Score=120.40 Aligned_cols=133 Identities=15% Similarity=0.153 Sum_probs=106.6
Q ss_pred HHHHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChH
Q psy1420 29 RLWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNP 108 (241)
Q Consensus 29 ~~~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~ 108 (241)
+..+..++..+...++.+|||+|||+|..+ ..++. . .+..+++++|+++.
T Consensus 26 ~~i~~~~l~~l~~~~~~~vLDiG~G~G~~~-------------~~la~----~-------------~~~~~v~~vD~s~~ 75 (204)
T 3e05_A 26 QEVRAVTLSKLRLQDDLVMWDIGAGSASVS-------------IEASN----L-------------MPNGRIFALERNPQ 75 (204)
T ss_dssp HHHHHHHHHHTTCCTTCEEEEETCTTCHHH-------------HHHHH----H-------------CTTSEEEEEECCHH
T ss_pred HHHHHHHHHHcCCCCCCEEEEECCCCCHHH-------------HHHHH----H-------------CCCCEEEEEeCCHH
Confidence 344566777888888999999999999988 44443 1 02468999999999
Q ss_pred hHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHH
Q psy1420 109 RLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKAL 188 (241)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l 188 (241)
+++.+++++. ..++. +++++.+|+.+......+||+|++...++ ++..++
T Consensus 76 ~~~~a~~~~~-------------------------~~~~~--~v~~~~~d~~~~~~~~~~~D~i~~~~~~~---~~~~~l 125 (204)
T 3e05_A 76 YLGFIRDNLK-------------------------KFVAR--NVTLVEAFAPEGLDDLPDPDRVFIGGSGG---MLEEII 125 (204)
T ss_dssp HHHHHHHHHH-------------------------HHTCT--TEEEEECCTTTTCTTSCCCSEEEESCCTT---CHHHHH
T ss_pred HHHHHHHHHH-------------------------HhCCC--cEEEEeCChhhhhhcCCCCCEEEECCCCc---CHHHHH
Confidence 9999999887 55543 68999999866543346799999887665 788999
Q ss_pred HHHHHhccCCcEEEEEecCH---HHHHHHHHHCCCc
Q psy1420 189 SEAYRVLKPGGRFLCLEFSH---EEFKSMIESAGFQ 221 (241)
Q Consensus 189 ~~~~~~LkpgG~l~i~~~~~---~~~~~~l~~~Gf~ 221 (241)
+++.++|||||++++..... +++.++++++||.
T Consensus 126 ~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~ 161 (204)
T 3e05_A 126 DAVDRRLKSEGVIVLNAVTLDTLTKAVEFLEDHGYM 161 (204)
T ss_dssp HHHHHHCCTTCEEEEEECBHHHHHHHHHHHHHTTCE
T ss_pred HHHHHhcCCCeEEEEEecccccHHHHHHHHHHCCCc
Confidence 99999999999999987765 7788899999993
No 74
>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*
Probab=99.63 E-value=2.4e-15 Score=130.76 Aligned_cols=119 Identities=18% Similarity=0.160 Sum_probs=93.6
Q ss_pred HHHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHh
Q psy1420 30 LWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPR 109 (241)
Q Consensus 30 ~~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~ 109 (241)
.+.+.+.+.+...++.+|||+|||+|.++ ..++. ....++++|+|+.+
T Consensus 44 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~-------------~~l~~-------------------~~~~v~gvD~s~~~ 91 (293)
T 3thr_A 44 EYKAWLLGLLRQHGCHRVLDVACGTGVDS-------------IMLVE-------------------EGFSVTSVDASDKM 91 (293)
T ss_dssp HHHHHHHHHHHHTTCCEEEETTCTTSHHH-------------HHHHH-------------------TTCEEEEEESCHHH
T ss_pred HHHHHHHHHhcccCCCEEEEecCCCCHHH-------------HHHHH-------------------CCCeEEEEECCHHH
Confidence 34455666655567789999999999988 54444 34589999999999
Q ss_pred HHHHHHHHhcCCCccccccccceecceeeeeeccccCCC--CCCeeEEecccCCCC---CCCCceeEEeee-ehhhcccc
Q psy1420 110 LRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIP--NPRLRFLEANAEELP---IESDSYSAYTIA-FGIRNVTR 183 (241)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~d~~~~~---~~~~~~D~V~~~-~~l~~~~~ 183 (241)
++.++++.. ..+.. ..++.+..+|+..++ .+.++||+|++. .+++++++
T Consensus 92 l~~a~~~~~-------------------------~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~V~~~g~~l~~~~~ 146 (293)
T 3thr_A 92 LKYALKERW-------------------------NRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVICLGNSFAHLPD 146 (293)
T ss_dssp HHHHHHHHH-------------------------HTTTSHHHHTCEEEECCGGGHHHHSCCTTCEEEEEECTTCGGGSCC
T ss_pred HHHHHHhhh-------------------------hcccccccceeeEeecChhhCccccccCCCeEEEEEcChHHhhcCc
Confidence 999988763 11100 025678888888876 667899999998 89999999
Q ss_pred -------HHHHHHHHHHhccCCcEEEEEe
Q psy1420 184 -------IDKALSEAYRVLKPGGRFLCLE 205 (241)
Q Consensus 184 -------~~~~l~~~~~~LkpgG~l~i~~ 205 (241)
+..++++++++|||||++++..
T Consensus 147 ~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (293)
T 3thr_A 147 SKGDQSEHRLALKNIASMVRPGGLLVIDH 175 (293)
T ss_dssp SSSSSHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred cccCHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 8999999999999999999764
No 75
>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*
Probab=99.62 E-value=3.1e-16 Score=133.85 Aligned_cols=164 Identities=14% Similarity=0.163 Sum_probs=115.4
Q ss_pred hHHHHHhhhhhccccchhhhh-------hhhHHHHHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhh
Q psy1420 4 PMYEVFENVAKSYDTMNDAMS-------FGIHRLWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIP 76 (241)
Q Consensus 4 ~~~~~f~~~~~~yd~~~~~~~-------~~~~~~~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~ 76 (241)
..+..|+..+..||..+.... ..+.+-+.+.+.+.+. .+|.+|||||||+|..+ ..++.
T Consensus 15 ~~~~~w~~~~~~yd~~~~~l~~~g~~vm~~we~~~m~~~a~~~~-~~G~rVLdiG~G~G~~~-------------~~~~~ 80 (236)
T 3orh_A 15 NCSPAWGAAPAAYDAADTHLRILGKPVMERWETPYMHALAAAAS-SKGGRVLEVGFGMAIAA-------------SKVQE 80 (236)
T ss_dssp BCHHHHTTSCEEECTTSSEEEETTEEEEEGGGHHHHHHHHHHHT-TTCEEEEEECCTTSHHH-------------HHHTT
T ss_pred hhhhhHhcCcCCCCcchhhhhhcCHHHHHHHHHHHHHHHHHhhc-cCCCeEEEECCCccHHH-------------HHHHH
Confidence 456788888888887532211 1122233344444443 57889999999999887 33332
Q ss_pred hhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEe
Q psy1420 77 VMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLE 156 (241)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (241)
....+++++|+++.+++.++++.. ..+ .+++++.
T Consensus 81 ------------------~~~~~v~~id~~~~~~~~a~~~~~-------------------------~~~---~~~~~~~ 114 (236)
T 3orh_A 81 ------------------APIDEHWIIECNDGVFQRLRDWAP-------------------------RQT---HKVIPLK 114 (236)
T ss_dssp ------------------SCEEEEEEEECCHHHHHHHHHHGG-------------------------GCS---SEEEEEE
T ss_pred ------------------hCCcEEEEEeCCHHHHHHHHHHHh-------------------------hCC---CceEEEe
Confidence 123478999999999999999877 333 3577888
Q ss_pred cccCCC--CCCCCceeEEee-----eehhhccccHHHHHHHHHHhccCCcEEEEEecCH-----------------HHHH
Q psy1420 157 ANAEEL--PIESDSYSAYTI-----AFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH-----------------EEFK 212 (241)
Q Consensus 157 ~d~~~~--~~~~~~~D~V~~-----~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~-----------------~~~~ 212 (241)
+++... +.++++||.|++ ...+++..++..++++++|+|||||+|.+..... +.+.
T Consensus 115 ~~a~~~~~~~~~~~FD~i~~D~~~~~~~~~~~~~~~~~~~e~~rvLkPGG~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (236)
T 3orh_A 115 GLWEDVAPTLPDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLTSWGELMKSKYSDITIMFEETQV 194 (236)
T ss_dssp SCHHHHGGGSCTTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECCHHHHHHHTTTTCSCHHHHHHHHTH
T ss_pred ehHHhhcccccccCCceEEEeeeecccchhhhcchhhhhhhhhheeCCCCEEEEEecCCchhhhhhhhhhhhhhhHHHHH
Confidence 887654 456778999864 4566778889999999999999999998754211 5566
Q ss_pred HHHHHCCCceEEEEE
Q psy1420 213 SMIESAGFQYVTYEN 227 (241)
Q Consensus 213 ~~l~~~Gf~~~~~~~ 227 (241)
..|.++||+.+.+..
T Consensus 195 ~~L~eaGF~~~~i~~ 209 (236)
T 3orh_A 195 PALLEAGFRRENIRT 209 (236)
T ss_dssp HHHHHHTCCGGGEEE
T ss_pred HHHHHcCCeEEEEEE
Confidence 778899998766543
No 76
>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}
Probab=99.62 E-value=5e-15 Score=119.02 Aligned_cols=139 Identities=17% Similarity=0.254 Sum_probs=106.3
Q ss_pred HHHHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChH
Q psy1420 29 RLWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNP 108 (241)
Q Consensus 29 ~~~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~ 108 (241)
+.++..+++.+...++.+|||+|||+|..+ ..++. . ....+++++|+++.
T Consensus 11 ~~~~~~~~~~~~~~~~~~vldiG~G~G~~~-------------~~l~~----~-------------~~~~~v~~vD~~~~ 60 (178)
T 3hm2_A 11 QHVRALAISALAPKPHETLWDIGGGSGSIA-------------IEWLR----S-------------TPQTTAVCFEISEE 60 (178)
T ss_dssp HHHHHHHHHHHCCCTTEEEEEESTTTTHHH-------------HHHHT----T-------------SSSEEEEEECSCHH
T ss_pred HHHHHHHHHHhcccCCCeEEEeCCCCCHHH-------------HHHHH----H-------------CCCCeEEEEeCCHH
Confidence 445667777778888999999999999988 43333 0 02568999999999
Q ss_pred hHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCC-CCCCCCceeEEeeeehhhccccHHHH
Q psy1420 109 RLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEE-LPIESDSYSAYTIAFGIRNVTRIDKA 187 (241)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~D~V~~~~~l~~~~~~~~~ 187 (241)
+++.+++++. ..+++ .++ ++..|... ++...++||+|++...+++ ..+
T Consensus 61 ~~~~a~~~~~-------------------------~~~~~-~~~-~~~~d~~~~~~~~~~~~D~i~~~~~~~~----~~~ 109 (178)
T 3hm2_A 61 RRERILSNAI-------------------------NLGVS-DRI-AVQQGAPRAFDDVPDNPDVIFIGGGLTA----PGV 109 (178)
T ss_dssp HHHHHHHHHH-------------------------TTTCT-TSE-EEECCTTGGGGGCCSCCSEEEECC-TTC----TTH
T ss_pred HHHHHHHHHH-------------------------HhCCC-CCE-EEecchHhhhhccCCCCCEEEECCcccH----HHH
Confidence 9999999887 44544 367 77777643 3322278999999988877 678
Q ss_pred HHHHHHhccCCcEEEEEecCH---HHHHHHHHHCCCceEEEEEe
Q psy1420 188 LSEAYRVLKPGGRFLCLEFSH---EEFKSMIESAGFQYVTYENL 228 (241)
Q Consensus 188 l~~~~~~LkpgG~l~i~~~~~---~~~~~~l~~~Gf~~~~~~~~ 228 (241)
++++.++|||||++++..... ..+.+++++.|+.+..+...
T Consensus 110 l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (178)
T 3hm2_A 110 FAAAWKRLPVGGRLVANAVTVESEQMLWALRKQFGGTISSFAIS 153 (178)
T ss_dssp HHHHHHTCCTTCEEEEEECSHHHHHHHHHHHHHHCCEEEEEEEE
T ss_pred HHHHHHhcCCCCEEEEEeeccccHHHHHHHHHHcCCeeEEEEee
Confidence 999999999999999988766 67788899999877665433
No 77
>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}
Probab=99.62 E-value=1.1e-14 Score=121.48 Aligned_cols=136 Identities=16% Similarity=0.212 Sum_probs=107.5
Q ss_pred HHHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHh
Q psy1420 30 LWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPR 109 (241)
Q Consensus 30 ~~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~ 109 (241)
..+..++..+...++.+|||+|||+|..+ ..++. ...+++++|+++.+
T Consensus 42 ~~~~~~l~~l~~~~~~~vLDlGcG~G~~~-------------~~la~-------------------~~~~v~~vD~s~~~ 89 (204)
T 3njr_A 42 PMRALTLAALAPRRGELLWDIGGGSGSVS-------------VEWCL-------------------AGGRAITIEPRADR 89 (204)
T ss_dssp HHHHHHHHHHCCCTTCEEEEETCTTCHHH-------------HHHHH-------------------TTCEEEEEESCHHH
T ss_pred HHHHHHHHhcCCCCCCEEEEecCCCCHHH-------------HHHHH-------------------cCCEEEEEeCCHHH
Confidence 34455667777888899999999999988 44444 24679999999999
Q ss_pred HHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHH
Q psy1420 110 LRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALS 189 (241)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~ 189 (241)
++.+++++. ..+++ ++++++.+|+.+......+||+|++..++ ++. +++
T Consensus 90 ~~~a~~~~~-------------------------~~g~~-~~v~~~~~d~~~~~~~~~~~D~v~~~~~~----~~~-~l~ 138 (204)
T 3njr_A 90 IENIQKNID-------------------------TYGLS-PRMRAVQGTAPAALADLPLPEAVFIGGGG----SQA-LYD 138 (204)
T ss_dssp HHHHHHHHH-------------------------HTTCT-TTEEEEESCTTGGGTTSCCCSEEEECSCC----CHH-HHH
T ss_pred HHHHHHHHH-------------------------HcCCC-CCEEEEeCchhhhcccCCCCCEEEECCcc----cHH-HHH
Confidence 999999987 55554 47899999988742233579999987644 556 999
Q ss_pred HHHHhccCCcEEEEEecCH---HHHHHHHHHCCCceEEEEEe
Q psy1420 190 EAYRVLKPGGRFLCLEFSH---EEFKSMIESAGFQYVTYENL 228 (241)
Q Consensus 190 ~~~~~LkpgG~l~i~~~~~---~~~~~~l~~~Gf~~~~~~~~ 228 (241)
++.++|||||++++..... .++.+++++.|+.+..+...
T Consensus 139 ~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~g~~i~~i~~~ 180 (204)
T 3njr_A 139 RLWEWLAPGTRIVANAVTLESETLLTQLHARHGGQLLRIDIA 180 (204)
T ss_dssp HHHHHSCTTCEEEEEECSHHHHHHHHHHHHHHCSEEEEEEEE
T ss_pred HHHHhcCCCcEEEEEecCcccHHHHHHHHHhCCCcEEEEEee
Confidence 9999999999999988776 67778889999988776543
No 78
>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4
Probab=99.61 E-value=1.5e-14 Score=117.06 Aligned_cols=151 Identities=15% Similarity=0.223 Sum_probs=113.7
Q ss_pred HHHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHh
Q psy1420 30 LWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPR 109 (241)
Q Consensus 30 ~~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~ 109 (241)
...+.+++.+...++.+|||+|||+|..+ ..++. ....++++|+++.+
T Consensus 39 ~~~~~l~~~~~~~~~~~vLdiG~G~G~~~-------------~~~~~-------------------~~~~v~~~D~~~~~ 86 (194)
T 1dus_A 39 KGTKILVENVVVDKDDDILDLGCGYGVIG-------------IALAD-------------------EVKSTTMADINRRA 86 (194)
T ss_dssp HHHHHHHHHCCCCTTCEEEEETCTTSHHH-------------HHHGG-------------------GSSEEEEEESCHHH
T ss_pred hHHHHHHHHcccCCCCeEEEeCCCCCHHH-------------HHHHH-------------------cCCeEEEEECCHHH
Confidence 34567777777778889999999999988 44444 24579999999999
Q ss_pred HHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhc-cccHHHHH
Q psy1420 110 LRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRN-VTRIDKAL 188 (241)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~-~~~~~~~l 188 (241)
++.+++++. ..++.+.++++...|+... .+.++||+|+++..+++ ..+...++
T Consensus 87 ~~~a~~~~~-------------------------~~~~~~~~~~~~~~d~~~~-~~~~~~D~v~~~~~~~~~~~~~~~~l 140 (194)
T 1dus_A 87 IKLAKENIK-------------------------LNNLDNYDIRVVHSDLYEN-VKDRKYNKIITNPPIRAGKEVLHRII 140 (194)
T ss_dssp HHHHHHHHH-------------------------HTTCTTSCEEEEECSTTTT-CTTSCEEEEEECCCSTTCHHHHHHHH
T ss_pred HHHHHHHHH-------------------------HcCCCccceEEEECchhcc-cccCCceEEEECCCcccchhHHHHHH
Confidence 999999887 4444412488999998774 34678999999888776 46778999
Q ss_pred HHHHHhccCCcEEEEEecCH---HHHHHHHHHCCCceEEEEEecCceeEEEeeec
Q psy1420 189 SEAYRVLKPGGRFLCLEFSH---EEFKSMIESAGFQYVTYENLTFGVVAIHSGFK 240 (241)
Q Consensus 189 ~~~~~~LkpgG~l~i~~~~~---~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~~ 240 (241)
+++.++|+|||++++..... .++.+.+++. |..++......| ..++.++|
T Consensus 141 ~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~-~~~~~~~k 193 (194)
T 1dus_A 141 EEGKELLKDNGEIWVVIQTKQGAKSLAKYMKDV-FGNVETVTIKGG-YRVLKSKK 193 (194)
T ss_dssp HHHHHHEEEEEEEEEEEESTHHHHHHHHHHHHH-HSCCEEEEEETT-EEEEEEEC
T ss_pred HHHHHHcCCCCEEEEEECCCCChHHHHHHHHHH-hcceEEEecCCc-EEEEEEee
Confidence 99999999999999988775 5577777777 544544444333 34455555
No 79
>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*
Probab=99.61 E-value=7.8e-16 Score=130.49 Aligned_cols=159 Identities=14% Similarity=0.195 Sum_probs=111.0
Q ss_pred hHHHHHhhhhhccccchhhhh-------hhhHHHHHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhh
Q psy1420 4 PMYEVFENVAKSYDTMNDAMS-------FGIHRLWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIP 76 (241)
Q Consensus 4 ~~~~~f~~~~~~yd~~~~~~~-------~~~~~~~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~ 76 (241)
.....|+..+..|+..+..+. ..+.+...+.+...+ ..++.+|||+|||+|..+ ..+..
T Consensus 15 ~~~~~~~~~~~~Yd~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~vLDiGcGtG~~~-------------~~l~~ 80 (236)
T 1zx0_A 15 NCSPAWGAAPAAYDAADTHLRILGKPVMERWETPYMHALAAAA-SSKGGRVLEVGFGMAIAA-------------SKVQE 80 (236)
T ss_dssp BCHHHHTTSCEEECTTSCEEEETTEEEEEGGGHHHHHHHHHHH-TTTCEEEEEECCTTSHHH-------------HHHHT
T ss_pred CCchhhhcchhhcCCccchhhccchHHHHHHHHHHHHHHHhhc-CCCCCeEEEEeccCCHHH-------------HHHHh
Confidence 456778888888885332111 111222223333333 457789999999999988 33322
Q ss_pred hhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEe
Q psy1420 77 VMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLE 156 (241)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (241)
. ....++++|+|+.+++.++++.. ..+ .++.+++
T Consensus 81 --------~----------~~~~v~gvD~s~~~l~~a~~~~~-------------------------~~~---~~v~~~~ 114 (236)
T 1zx0_A 81 --------A----------PIDEHWIIECNDGVFQRLRDWAP-------------------------RQT---HKVIPLK 114 (236)
T ss_dssp --------S----------CEEEEEEEECCHHHHHHHHHHGG-------------------------GCS---SEEEEEE
T ss_pred --------c----------CCCeEEEEcCCHHHHHHHHHHHH-------------------------hcC---CCeEEEe
Confidence 0 23379999999999999999876 333 3688999
Q ss_pred cccCCC--CCCCCceeEEee-eehh--h--ccccHHHHHHHHHHhccCCcEEEEEecCH-----------------HHHH
Q psy1420 157 ANAEEL--PIESDSYSAYTI-AFGI--R--NVTRIDKALSEAYRVLKPGGRFLCLEFSH-----------------EEFK 212 (241)
Q Consensus 157 ~d~~~~--~~~~~~~D~V~~-~~~l--~--~~~~~~~~l~~~~~~LkpgG~l~i~~~~~-----------------~~~~ 212 (241)
+|+..+ ++++++||+|++ .+.+ + +..+...++++++++|||||++++.+... +...
T Consensus 115 ~d~~~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (236)
T 1zx0_A 115 GLWEDVAPTLPDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLTSWGELMKSKYSDITIMFEETQV 194 (236)
T ss_dssp SCHHHHGGGSCTTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECCHHHHHHHTTTTCSCHHHHHHHHTH
T ss_pred cCHHHhhcccCCCceEEEEECCcccchhhhhhhhHHHHHHHHHHhcCCCeEEEEEecCcHHHhhchhhhhhhhhccHHHH
Confidence 999887 777889999999 5554 1 22344578999999999999999876443 3456
Q ss_pred HHHHHCCCce
Q psy1420 213 SMIESAGFQY 222 (241)
Q Consensus 213 ~~l~~~Gf~~ 222 (241)
..+.++||..
T Consensus 195 ~~l~~aGF~~ 204 (236)
T 1zx0_A 195 PALLEAGFRR 204 (236)
T ss_dssp HHHHHTTCCG
T ss_pred HHHHHCCCCC
Confidence 6889999985
No 80
>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}
Probab=99.61 E-value=5.3e-15 Score=132.82 Aligned_cols=146 Identities=16% Similarity=0.183 Sum_probs=109.7
Q ss_pred HHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHH
Q psy1420 32 KDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLR 111 (241)
Q Consensus 32 ~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~ 111 (241)
.+.+++.++..++.+|||+|||+|..+ ..++.. . +...++++|++ .++.
T Consensus 173 ~~~~~~~~~~~~~~~vLDvG~G~G~~~-------------~~l~~~-------~----------p~~~~~~~D~~-~~~~ 221 (348)
T 3lst_A 173 HLILARAGDFPATGTVADVGGGRGGFL-------------LTVLRE-------H----------PGLQGVLLDRA-EVVA 221 (348)
T ss_dssp HHHHHHHSCCCSSEEEEEETCTTSHHH-------------HHHHHH-------C----------TTEEEEEEECH-HHHT
T ss_pred HHHHHHhCCccCCceEEEECCccCHHH-------------HHHHHH-------C----------CCCEEEEecCH-HHhh
Confidence 345666777778889999999999988 444431 0 24467899984 3333
Q ss_pred HHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccH--HHHHH
Q psy1420 112 FLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRI--DKALS 189 (241)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~--~~~l~ 189 (241)
.++.. ..+.. +++++..+|+. .+.+ +||+|++..++|++++. .++|+
T Consensus 222 --~~~~~-------------------------~~~~~-~~v~~~~~d~~-~~~p--~~D~v~~~~vlh~~~d~~~~~~L~ 270 (348)
T 3lst_A 222 --RHRLD-------------------------APDVA-GRWKVVEGDFL-REVP--HADVHVLKRILHNWGDEDSVRILT 270 (348)
T ss_dssp --TCCCC-------------------------CGGGT-TSEEEEECCTT-TCCC--CCSEEEEESCGGGSCHHHHHHHHH
T ss_pred --ccccc-------------------------ccCCC-CCeEEEecCCC-CCCC--CCcEEEEehhccCCCHHHHHHHHH
Confidence 22221 22222 57999999996 3444 79999999999999988 69999
Q ss_pred HHHHhccCCcEEEEEecC---------------------------HHHHHHHHHHCCCceEEEEEecCceeEEEeeec
Q psy1420 190 EAYRVLKPGGRFLCLEFS---------------------------HEEFKSMIESAGFQYVTYENLTFGVVAIHSGFK 240 (241)
Q Consensus 190 ~~~~~LkpgG~l~i~~~~---------------------------~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~~ 240 (241)
+++++|||||++++.+.. .+++.++++++||+++++.. ..+...++.+++
T Consensus 271 ~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~-~~~~~~vie~~p 347 (348)
T 3lst_A 271 NCRRVMPAHGRVLVIDAVVPEGNDAHQSKEMDFMMLAARTGQERTAAELEPLFTAAGLRLDRVVG-TSSVMSIAVGVP 347 (348)
T ss_dssp HHHHTCCTTCEEEEEECCBCSSSSCCHHHHHHHHHHHTTSCCCCBHHHHHHHHHHTTEEEEEEEE-CSSSCEEEEEEE
T ss_pred HHHHhcCCCCEEEEEEeccCCCCCcchhhhcChhhhhcCCCcCCCHHHHHHHHHHCCCceEEEEE-CCCCcEEEEEEe
Confidence 999999999999997742 18899999999999999988 666667766654
No 81
>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43
Probab=99.61 E-value=1.1e-14 Score=123.83 Aligned_cols=136 Identities=21% Similarity=0.329 Sum_probs=97.4
Q ss_pred HHHhhhhhccccchhhhhhh--hHHHHHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhc
Q psy1420 7 EVFENVAKSYDTMNDAMSFG--IHRLWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAG 84 (241)
Q Consensus 7 ~~f~~~~~~yd~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (241)
+.|+.++..|+......... ....+.+.++......++.+|||+|||+|..+ ..++.
T Consensus 3 ~~y~~~a~~yd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDlGcG~G~~~-------------~~l~~-------- 61 (252)
T 1wzn_A 3 ELYTLLAEYYDTIYRRRIERVKAEIDFVEEIFKEDAKREVRRVLDLACGTGIPT-------------LELAE-------- 61 (252)
T ss_dssp GGGTTTGGGHHHHTHHHHHTHHHHHHHHHHHHHHTCSSCCCEEEEETCTTCHHH-------------HHHHH--------
T ss_pred hHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHhcccCCCEEEEeCCCCCHHH-------------HHHHH--------
Confidence 46778888888753221111 01122334444555567789999999999988 44444
Q ss_pred CCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCC
Q psy1420 85 QWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPI 164 (241)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 164 (241)
....++++|+|+.+++.++++.. ..+. ++.+.++|+..++.
T Consensus 62 -----------~~~~v~gvD~s~~~l~~a~~~~~-------------------------~~~~---~v~~~~~d~~~~~~ 102 (252)
T 1wzn_A 62 -----------RGYEVVGLDLHEEMLRVARRKAK-------------------------ERNL---KIEFLQGDVLEIAF 102 (252)
T ss_dssp -----------TTCEEEEEESCHHHHHHHHHHHH-------------------------HTTC---CCEEEESCGGGCCC
T ss_pred -----------CCCeEEEEECCHHHHHHHHHHHH-------------------------hcCC---ceEEEECChhhccc
Confidence 34579999999999999998876 3332 48899999988775
Q ss_pred CCCceeEEeeeeh-hhcc--ccHHHHHHHHHHhccCCcEEEE
Q psy1420 165 ESDSYSAYTIAFG-IRNV--TRIDKALSEAYRVLKPGGRFLC 203 (241)
Q Consensus 165 ~~~~~D~V~~~~~-l~~~--~~~~~~l~~~~~~LkpgG~l~i 203 (241)
+ ++||+|++.+. +++. ++...+++++.++|||||.+++
T Consensus 103 ~-~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~ 143 (252)
T 1wzn_A 103 K-NEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFIT 143 (252)
T ss_dssp C-SCEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred C-CCccEEEEcCCchhcCCHHHHHHHHHHHHHHcCCCeEEEE
Confidence 4 68999998643 3333 4567999999999999999876
No 82
>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20
Probab=99.61 E-value=6.9e-15 Score=125.18 Aligned_cols=127 Identities=20% Similarity=0.242 Sum_probs=100.2
Q ss_pred CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCC
Q psy1420 42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP 121 (241)
Q Consensus 42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~ 121 (241)
.++.+|||+|||+|..+ ..++. . . ...+++++|+++.+++.+++++.
T Consensus 69 ~~~~~vLDiG~G~G~~~-------------~~la~----~---~----------~~~~v~~vD~s~~~~~~a~~~~~--- 115 (240)
T 1xdz_A 69 NQVNTICDVGAGAGFPS-------------LPIKI----C---F----------PHLHVTIVDSLNKRITFLEKLSE--- 115 (240)
T ss_dssp GGCCEEEEECSSSCTTH-------------HHHHH----H---C----------TTCEEEEEESCHHHHHHHHHHHH---
T ss_pred CCCCEEEEecCCCCHHH-------------HHHHH----h---C----------CCCEEEEEeCCHHHHHHHHHHHH---
Confidence 46779999999999988 33331 0 0 35679999999999999999887
Q ss_pred CccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCC---CCceeEEeeeehhhccccHHHHHHHHHHhccCC
Q psy1420 122 IESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIE---SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPG 198 (241)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~---~~~~D~V~~~~~l~~~~~~~~~l~~~~~~Lkpg 198 (241)
..++. +++++++|+.+++.. .++||+|++.. +.++..+++.+.++||||
T Consensus 116 ----------------------~~~~~--~v~~~~~d~~~~~~~~~~~~~fD~V~~~~----~~~~~~~l~~~~~~Lkpg 167 (240)
T 1xdz_A 116 ----------------------ALQLE--NTTFCHDRAETFGQRKDVRESYDIVTARA----VARLSVLSELCLPLVKKN 167 (240)
T ss_dssp ----------------------HHTCS--SEEEEESCHHHHTTCTTTTTCEEEEEEEC----CSCHHHHHHHHGGGEEEE
T ss_pred ----------------------HcCCC--CEEEEeccHHHhcccccccCCccEEEEec----cCCHHHHHHHHHHhcCCC
Confidence 55554 589999998877643 57899999865 477899999999999999
Q ss_pred cEEEEEecCH-----HHHHHHHHHCCCceEEEEEec
Q psy1420 199 GRFLCLEFSH-----EEFKSMIESAGFQYVTYENLT 229 (241)
Q Consensus 199 G~l~i~~~~~-----~~~~~~l~~~Gf~~~~~~~~~ 229 (241)
|++++..-.. .++.+.+++.||.+.+...+.
T Consensus 168 G~l~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~~ 203 (240)
T 1xdz_A 168 GLFVALKAASAEEELNAGKKAITTLGGELENIHSFK 203 (240)
T ss_dssp EEEEEEECC-CHHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred CEEEEEeCCCchHHHHHHHHHHHHcCCeEeEEEEEe
Confidence 9998875332 456778889999988877653
No 83
>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*
Probab=99.60 E-value=1.7e-14 Score=129.57 Aligned_cols=150 Identities=19% Similarity=0.230 Sum_probs=117.3
Q ss_pred HHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHH
Q psy1420 33 DIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRF 112 (241)
Q Consensus 33 ~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~ 112 (241)
+.+.+.+...++.+|||+|||+|..+ ..++. . .+...++++|+ +.+++.
T Consensus 173 ~~l~~~~~~~~~~~vLDvG~G~G~~~-------------~~l~~----~-------------~~~~~~~~~D~-~~~~~~ 221 (360)
T 1tw3_A 173 DAPAAAYDWTNVRHVLDVGGGKGGFA-------------AAIAR----R-------------APHVSATVLEM-AGTVDT 221 (360)
T ss_dssp HHHHHHSCCTTCSEEEEETCTTSHHH-------------HHHHH----H-------------CTTCEEEEEEC-TTHHHH
T ss_pred HHHHHhCCCccCcEEEEeCCcCcHHH-------------HHHHH----h-------------CCCCEEEEecC-HHHHHH
Confidence 44556666677889999999999988 44433 1 02457889999 999999
Q ss_pred HHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccH--HHHHHH
Q psy1420 113 LEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRI--DKALSE 190 (241)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~--~~~l~~ 190 (241)
+++++. ..++. +++++..+|+.+ +.+. .||+|++..++|++++. .+++++
T Consensus 222 a~~~~~-------------------------~~~~~-~~v~~~~~d~~~-~~~~-~~D~v~~~~vl~~~~~~~~~~~l~~ 273 (360)
T 1tw3_A 222 ARSYLK-------------------------DEGLS-DRVDVVEGDFFE-PLPR-KADAIILSFVLLNWPDHDAVRILTR 273 (360)
T ss_dssp HHHHHH-------------------------HTTCT-TTEEEEECCTTS-CCSS-CEEEEEEESCGGGSCHHHHHHHHHH
T ss_pred HHHHHH-------------------------hcCCC-CceEEEeCCCCC-CCCC-CccEEEEcccccCCCHHHHHHHHHH
Confidence 998887 44544 479999999875 3333 49999999999999877 489999
Q ss_pred HHHhccCCcEEEEEecC--H--------------------------HHHHHHHHHCCCceEEEEEecCc----eeEEEee
Q psy1420 191 AYRVLKPGGRFLCLEFS--H--------------------------EEFKSMIESAGFQYVTYENLTFG----VVAIHSG 238 (241)
Q Consensus 191 ~~~~LkpgG~l~i~~~~--~--------------------------~~~~~~l~~~Gf~~~~~~~~~~~----~~~~~~~ 238 (241)
++++|||||++++.+.. . +++.++++++||+++++.....+ ...++.+
T Consensus 274 ~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~~~~~~i~~ 353 (360)
T 1tw3_A 274 CAEALEPGGRILIHERDDLHENSFNEQFTELDLRMLVFLGGALRTREKWDGLAASAGLVVEEVRQLPSPTIPYDLSLLVL 353 (360)
T ss_dssp HHHTEEEEEEEEEEECCBCGGGCCSHHHHHHHHHHHHHHSCCCCBHHHHHHHHHHTTEEEEEEEEEECSSSSCEEEEEEE
T ss_pred HHHhcCCCcEEEEEEEeccCCCCCcchhhhccHHHhhhcCCcCCCHHHHHHHHHHCCCeEEEEEeCCCCcccCccEEEEE
Confidence 99999999999998765 1 78899999999999998877533 2567777
Q ss_pred ecC
Q psy1420 239 FKL 241 (241)
Q Consensus 239 ~~~ 241 (241)
+|+
T Consensus 354 ~~~ 356 (360)
T 1tw3_A 354 APA 356 (360)
T ss_dssp EEC
T ss_pred EeC
Confidence 664
No 84
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}
Probab=99.60 E-value=4.5e-15 Score=134.21 Aligned_cols=140 Identities=16% Similarity=0.155 Sum_probs=110.8
Q ss_pred CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCC
Q psy1420 42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP 121 (241)
Q Consensus 42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~ 121 (241)
.+..+|||+|||+|..+ ..++. .. +..+++++|+ +.+++.+++++.
T Consensus 178 ~~~~~vlDvG~G~G~~~-------------~~l~~-------~~----------p~~~~~~~D~-~~~~~~a~~~~~--- 223 (363)
T 3dp7_A 178 HHPKRLLDIGGNTGKWA-------------TQCVQ-------YN----------KEVEVTIVDL-PQQLEMMRKQTA--- 223 (363)
T ss_dssp GCCSEEEEESCTTCHHH-------------HHHHH-------HS----------TTCEEEEEEC-HHHHHHHHHHHT---
T ss_pred cCCCEEEEeCCCcCHHH-------------HHHHH-------hC----------CCCEEEEEeC-HHHHHHHHHHHH---
Confidence 45679999999999988 44443 01 3557999999 999999998877
Q ss_pred CccccccccceecceeeeeeccccCCCCCCeeEEecccCCC--CCCCCceeEEeeeehhhccccH--HHHHHHHHHhccC
Q psy1420 122 IESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL--PIESDSYSAYTIAFGIRNVTRI--DKALSEAYRVLKP 197 (241)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~D~V~~~~~l~~~~~~--~~~l~~~~~~Lkp 197 (241)
..++. +++++..+|+... |++ ++||+|++..++|++++. .++|+++++.|||
T Consensus 224 ----------------------~~~~~-~~v~~~~~d~~~~~~~~p-~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~p 279 (363)
T 3dp7_A 224 ----------------------GLSGS-ERIHGHGANLLDRDVPFP-TGFDAVWMSQFLDCFSEEEVISILTRVAQSIGK 279 (363)
T ss_dssp ----------------------TCTTG-GGEEEEECCCCSSSCCCC-CCCSEEEEESCSTTSCHHHHHHHHHHHHHHCCT
T ss_pred ----------------------hcCcc-cceEEEEccccccCCCCC-CCcCEEEEechhhhCCHHHHHHHHHHHHHhcCC
Confidence 44443 4799999999886 455 689999999999988776 4889999999999
Q ss_pred CcEEEEEecC--------------------------------HHHHHHHHHHCCCceEEEEEecCceeEEEeee
Q psy1420 198 GGRFLCLEFS--------------------------------HEEFKSMIESAGFQYVTYENLTFGVVAIHSGF 239 (241)
Q Consensus 198 gG~l~i~~~~--------------------------------~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~ 239 (241)
||++++.+.. .++++++++++||+++++.....+...++..+
T Consensus 280 gG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~AGf~~v~~~~~~g~~~svi~~~ 353 (363)
T 3dp7_A 280 DSKVYIMETLWDRQRYETASYCLTQISLYFTAMANGNSKMFHSDDLIRCIENAGLEVEEIQDNIGLGHSILQCR 353 (363)
T ss_dssp TCEEEEEECCTTSCSSHHHHHHHHHHHHHHHHSSCSSCCSCCHHHHHHHHHTTTEEESCCCCCBTTTBEEEEEE
T ss_pred CcEEEEEeeccCCccccchhhHHHHhhhhHHhhhCCCCcccCHHHHHHHHHHcCCeEEEEEeCCCCCceEEEEe
Confidence 9999997632 27899999999999998886655445554443
No 85
>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}
Probab=99.60 E-value=3.4e-15 Score=130.84 Aligned_cols=117 Identities=14% Similarity=0.108 Sum_probs=93.2
Q ss_pred HHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHH
Q psy1420 32 KDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLR 111 (241)
Q Consensus 32 ~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~ 111 (241)
.+.+..... .++.+|||+|||+|..+ ..++. .+ ....+++++|+|+.+++
T Consensus 26 ~~~l~~~~~-~~~~~vLDiGcG~G~~~-------------~~la~----~~------------~~~~~v~gvD~s~~~~~ 75 (299)
T 3g5t_A 26 YKMIDEYHD-GERKLLVDVGCGPGTAT-------------LQMAQ----EL------------KPFEQIIGSDLSATMIK 75 (299)
T ss_dssp HHHHHHHCC-SCCSEEEEETCTTTHHH-------------HHHHH----HS------------SCCSEEEEEESCHHHHH
T ss_pred HHHHHHHhc-CCCCEEEEECCCCCHHH-------------HHHHH----hC------------CCCCEEEEEeCCHHHHH
Confidence 344444433 57889999999999988 44442 00 03678999999999999
Q ss_pred HHHHHHhcCCCccccccccceecceeeeeecccc-CCCCCCeeEEecccCCCCCCC------CceeEEeeeehhhccccH
Q psy1420 112 FLEANAEELPIESDSYSAYTIAFGIRNVTRIDKI-DIPNPRLRFLEANAEELPIES------DSYSAYTIAFGIRNVTRI 184 (241)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~d~~~~~~~~------~~~D~V~~~~~l~~~~~~ 184 (241)
.+++++. .. +.. .+++++++|+..++.+. ++||+|++..+++++ ++
T Consensus 76 ~a~~~~~-------------------------~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~~~fD~V~~~~~l~~~-~~ 128 (299)
T 3g5t_A 76 TAEVIKE-------------------------GSPDTY-KNVSFKISSSDDFKFLGADSVDKQKIDMITAVECAHWF-DF 128 (299)
T ss_dssp HHHHHHH-------------------------HCC-CC-TTEEEEECCTTCCGGGCTTTTTSSCEEEEEEESCGGGS-CH
T ss_pred HHHHHHH-------------------------hccCCC-CceEEEEcCHHhCCccccccccCCCeeEEeHhhHHHHh-CH
Confidence 9999877 32 112 47999999999988766 799999999999999 99
Q ss_pred HHHHHHHHHhccCCcEEEEEe
Q psy1420 185 DKALSEAYRVLKPGGRFLCLE 205 (241)
Q Consensus 185 ~~~l~~~~~~LkpgG~l~i~~ 205 (241)
..+++++.++|||||.+++.+
T Consensus 129 ~~~l~~~~~~LkpgG~l~i~~ 149 (299)
T 3g5t_A 129 EKFQRSAYANLRKDGTIAIWG 149 (299)
T ss_dssp HHHHHHHHHHEEEEEEEEEEE
T ss_pred HHHHHHHHHhcCCCcEEEEEe
Confidence 999999999999999998843
No 86
>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}
Probab=99.60 E-value=1.1e-14 Score=125.05 Aligned_cols=142 Identities=11% Similarity=0.047 Sum_probs=107.7
Q ss_pred hcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHH
Q psy1420 38 RLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANA 117 (241)
Q Consensus 38 ~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~ 117 (241)
.+..+||.+|||+|||+|.++ ..++..+| +...++++|+++.|++.+.+++
T Consensus 72 ~l~ikpG~~VldlG~G~G~~~-------------~~la~~VG----------------~~G~V~avD~s~~~~~~l~~~a 122 (233)
T 4df3_A 72 ELPVKEGDRILYLGIASGTTA-------------SHMSDIIG----------------PRGRIYGVEFAPRVMRDLLTVV 122 (233)
T ss_dssp CCCCCTTCEEEEETCTTSHHH-------------HHHHHHHC----------------TTCEEEEEECCHHHHHHHHHHS
T ss_pred hcCCCCCCEEEEecCcCCHHH-------------HHHHHHhC----------------CCceEEEEeCCHHHHHHHHHhh
Confidence 456799999999999999999 66666554 5678999999999999998887
Q ss_pred hcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCC---CCCCCceeEEeeeehhhccccHHHHHHHHHHh
Q psy1420 118 EELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL---PIESDSYSAYTIAFGIRNVTRIDKALSEAYRV 194 (241)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~ 194 (241)
. +. +++..+.+|.... +...+.+|+|++. +.+..++..++.++.+.
T Consensus 123 ~-------------------------~~----~ni~~V~~d~~~p~~~~~~~~~vDvVf~d--~~~~~~~~~~l~~~~r~ 171 (233)
T 4df3_A 123 R-------------------------DR----RNIFPILGDARFPEKYRHLVEGVDGLYAD--VAQPEQAAIVVRNARFF 171 (233)
T ss_dssp T-------------------------TC----TTEEEEESCTTCGGGGTTTCCCEEEEEEC--CCCTTHHHHHHHHHHHH
T ss_pred H-------------------------hh----cCeeEEEEeccCccccccccceEEEEEEe--ccCChhHHHHHHHHHHh
Confidence 6 21 3577777776553 4456789999864 34456778899999999
Q ss_pred ccCCcEEEEEecCH------------HHHHHHHHHCCCceEEEEEecC--ceeEEEeee
Q psy1420 195 LKPGGRFLCLEFSH------------EEFKSMIESAGFQYVTYENLTF--GVVAIHSGF 239 (241)
Q Consensus 195 LkpgG~l~i~~~~~------------~~~~~~l~~~Gf~~~~~~~~~~--~~~~~~~~~ 239 (241)
|||||+++++.... ++..+.|+++||++++..++.. -.+.+++|+
T Consensus 172 LKpGG~lvI~ik~r~~d~~~p~~~~~~~ev~~L~~~GF~l~e~i~L~pf~~~H~lv~~~ 230 (233)
T 4df3_A 172 LRDGGYMLMAIKARSIDVTTEPSEVYKREIKTLMDGGLEIKDVVHLDPFDRDHAMIYAV 230 (233)
T ss_dssp EEEEEEEEEEEECCHHHHHTCCCHHHHHHHHHHHHTTCCEEEEEECTTTSTTEEEEEEC
T ss_pred ccCCCEEEEEEecccCCCCCChHHHHHHHHHHHHHCCCEEEEEEccCCCCCceEEEEEE
Confidence 99999998864222 4456778999999998887732 345555553
No 87
>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*
Probab=99.60 E-value=8.8e-15 Score=126.53 Aligned_cols=143 Identities=9% Similarity=0.026 Sum_probs=101.1
Q ss_pred CCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhc
Q psy1420 40 GPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEE 119 (241)
Q Consensus 40 ~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~ 119 (241)
...++.+|||+|||+|..+ ..++. .+..++|+|+|+.+++.++++...
T Consensus 65 ~~~~~~~vLD~GCG~G~~~-------------~~La~-------------------~G~~V~gvD~S~~~i~~a~~~~~~ 112 (252)
T 2gb4_A 65 KGQSGLRVFFPLCGKAIEM-------------KWFAD-------------------RGHTVVGVEISEIGIREFFAEQNL 112 (252)
T ss_dssp TTCCSCEEEETTCTTCTHH-------------HHHHH-------------------TTCEEEEECSCHHHHHHHHHHTTC
T ss_pred cCCCCCeEEEeCCCCcHHH-------------HHHHH-------------------CCCeEEEEECCHHHHHHHHHhccc
Confidence 3456789999999999988 43443 356899999999999999766430
Q ss_pred CCCccccccccceecceeeeeeccccC---CCCCCeeEEecccCCCCCCC-CceeEEeeeehhhcccc--HHHHHHHHHH
Q psy1420 120 LPIESDSYSAYTIAFGIRNVTRIDKID---IPNPRLRFLEANAEELPIES-DSYSAYTIAFGIRNVTR--IDKALSEAYR 193 (241)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~d~~~~~~~~-~~~D~V~~~~~l~~~~~--~~~~l~~~~~ 193 (241)
-+ ....+....... -...++++.++|+..++.+. ++||+|++..++++++. ...+++++.+
T Consensus 113 ~~-------------~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~l~~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~ 179 (252)
T 2gb4_A 113 SY-------------TEEPLAEIAGAKVFKSSSGSISLYCCSIFDLPRANIGKFDRIWDRGALVAINPGDHDRYADIILS 179 (252)
T ss_dssp CE-------------EEEECTTSTTCEEEEETTSSEEEEESCTTTGGGGCCCCEEEEEESSSTTTSCGGGHHHHHHHHHH
T ss_pred cc-------------ccccccccccccccccCCCceEEEECccccCCcccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHH
Confidence 00 000000000000 00136899999999987653 79999999988888754 5679999999
Q ss_pred hccCCcEEEEEe--------------cCHHHHHHHHHHCCCceEEEEEe
Q psy1420 194 VLKPGGRFLCLE--------------FSHEEFKSMIESAGFQYVTYENL 228 (241)
Q Consensus 194 ~LkpgG~l~i~~--------------~~~~~~~~~l~~~Gf~~~~~~~~ 228 (241)
+|||||++++.+ ++.+++.+++.. +|+++..+..
T Consensus 180 ~LkpGG~l~l~~~~~~~~~~~g~~~~~~~~el~~~l~~-~f~v~~~~~~ 227 (252)
T 2gb4_A 180 LLRKEFQYLVAVLSYDPTKHAGPPFYVPSAELKRLFGT-KCSMQCLEEV 227 (252)
T ss_dssp TEEEEEEEEEEEEECCTTSCCCSSCCCCHHHHHHHHTT-TEEEEEEEEE
T ss_pred HcCCCeEEEEEEEecCCccCCCCCCCCCHHHHHHHhhC-CeEEEEEecc
Confidence 999999987543 234889999987 5988777654
No 88
>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}
Probab=99.60 E-value=2e-14 Score=118.46 Aligned_cols=130 Identities=19% Similarity=0.320 Sum_probs=100.4
Q ss_pred HHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhH
Q psy1420 31 WKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRL 110 (241)
Q Consensus 31 ~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~ 110 (241)
+.+.+.+.+ .++.+|||+|||+|..+ ..++. .....++++|+++.++
T Consensus 32 ~~~~l~~~~--~~~~~vLdiGcG~G~~~-------------~~l~~------------------~~~~~v~~~D~s~~~~ 78 (215)
T 2pxx_A 32 FRALLEPEL--RPEDRILVLGCGNSALS-------------YELFL------------------GGFPNVTSVDYSSVVV 78 (215)
T ss_dssp HHHHHGGGC--CTTCCEEEETCTTCSHH-------------HHHHH------------------TTCCCEEEEESCHHHH
T ss_pred HHHHHHHhc--CCCCeEEEECCCCcHHH-------------HHHHH------------------cCCCcEEEEeCCHHHH
Confidence 344444443 56779999999999988 44433 0123799999999999
Q ss_pred HHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccc--------
Q psy1420 111 RFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVT-------- 182 (241)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~-------- 182 (241)
+.++++.. . .+++.+..+|+..++.+.++||+|++...++++.
T Consensus 79 ~~a~~~~~-------------------------~----~~~i~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~~~~~~~~~ 129 (215)
T 2pxx_A 79 AAMQACYA-------------------------H----VPQLRWETMDVRKLDFPSASFDVVLEKGTLDALLAGERDPWT 129 (215)
T ss_dssp HHHHHHTT-------------------------T----CTTCEEEECCTTSCCSCSSCEEEEEEESHHHHHTTTCSCTTS
T ss_pred HHHHHhcc-------------------------c----CCCcEEEEcchhcCCCCCCcccEEEECcchhhhccccccccc
Confidence 99998865 2 1368899999998887778999999988886543
Q ss_pred -------cHHHHHHHHHHhccCCcEEEEEecCHHH-HHHHHHHCCCce
Q psy1420 183 -------RIDKALSEAYRVLKPGGRFLCLEFSHEE-FKSMIESAGFQY 222 (241)
Q Consensus 183 -------~~~~~l~~~~~~LkpgG~l~i~~~~~~~-~~~~l~~~Gf~~ 222 (241)
++..+++++.++|||||++++.++.... ...++...|+.+
T Consensus 130 ~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~ 177 (215)
T 2pxx_A 130 VSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAAPHFRTRHYAQAYYGW 177 (215)
T ss_dssp CCHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCHHHHHHHHCCGGGCE
T ss_pred cccchhHHHHHHHHHHHHhCcCCCEEEEEeCCCcHHHHHHHhccccCc
Confidence 6689999999999999999999988754 455666777743
No 89
>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}
Probab=99.59 E-value=5.5e-15 Score=121.91 Aligned_cols=126 Identities=21% Similarity=0.232 Sum_probs=101.1
Q ss_pred CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCC
Q psy1420 42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP 121 (241)
Q Consensus 42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~ 121 (241)
.++.+|||+|||+|..+ ..++. ....+++++|+++.+++.+++++.
T Consensus 22 ~~~~~vLDiGcG~G~~~-------------~~~~~------------------~~~~~v~~vD~s~~~~~~a~~~~~--- 67 (209)
T 2p8j_A 22 NLDKTVLDCGAGGDLPP-------------LSIFV------------------EDGYKTYGIEISDLQLKKAENFSR--- 67 (209)
T ss_dssp SSCSEEEEESCCSSSCT-------------HHHHH------------------HTTCEEEEEECCHHHHHHHHHHHH---
T ss_pred CCCCEEEEECCCCCHHH-------------HHHHH------------------hCCCEEEEEECCHHHHHHHHHHHH---
Confidence 46789999999999975 22221 034589999999999999998876
Q ss_pred CccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhcc--ccHHHHHHHHHHhccCCc
Q psy1420 122 IESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNV--TRIDKALSEAYRVLKPGG 199 (241)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~--~~~~~~l~~~~~~LkpgG 199 (241)
..+ .++.+..+|+..++.++++||+|++..+++++ .++..+++++.++|||||
T Consensus 68 ----------------------~~~---~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG 122 (209)
T 2p8j_A 68 ----------------------ENN---FKLNISKGDIRKLPFKDESMSFVYSYGTIFHMRKNDVKEAIDEIKRVLKPGG 122 (209)
T ss_dssp ----------------------HHT---CCCCEEECCTTSCCSCTTCEEEEEECSCGGGSCHHHHHHHHHHHHHHEEEEE
T ss_pred ----------------------hcC---CceEEEECchhhCCCCCCceeEEEEcChHHhCCHHHHHHHHHHHHHHcCCCc
Confidence 322 25788999999988877899999999999998 678899999999999999
Q ss_pred EEEEEecC--------------------------------HHHHHHHHHHCCCceEEEE
Q psy1420 200 RFLCLEFS--------------------------------HEEFKSMIESAGFQYVTYE 226 (241)
Q Consensus 200 ~l~i~~~~--------------------------------~~~~~~~l~~~Gf~~~~~~ 226 (241)
++++.+++ .+++.++++++||...+..
T Consensus 123 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~~~~~ 181 (209)
T 2p8j_A 123 LACINFLTTKDERYNKGEKIGEGEFLQLERGEKVIHSYVSLEEADKYFKDMKVLFKEDR 181 (209)
T ss_dssp EEEEEEEETTSTTTTCSEEEETTEEEECC-CCCEEEEEECHHHHHHTTTTSEEEEEEEE
T ss_pred EEEEEEecccchhccchhhhccccceeccCCCceeEEecCHHHHHHHHhhcCceeeeee
Confidence 99986532 1678889999998665443
No 90
>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A
Probab=99.59 E-value=7.1e-15 Score=120.94 Aligned_cols=124 Identities=19% Similarity=0.293 Sum_probs=99.8
Q ss_pred CCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCC
Q psy1420 43 HDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPI 122 (241)
Q Consensus 43 ~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~ 122 (241)
++ +|||+|||+|..+ ..+.. ....++++|+++.+++.++++..
T Consensus 30 ~~-~vLdiGcG~G~~~-------------~~l~~-------------------~~~~v~~vD~s~~~~~~a~~~~~---- 72 (202)
T 2kw5_A 30 QG-KILCLAEGEGRNA-------------CFLAS-------------------LGYEVTAVDQSSVGLAKAKQLAQ---- 72 (202)
T ss_dssp SS-EEEECCCSCTHHH-------------HHHHT-------------------TTCEEEEECSSHHHHHHHHHHHH----
T ss_pred CC-CEEEECCCCCHhH-------------HHHHh-------------------CCCeEEEEECCHHHHHHHHHHHH----
Confidence 45 9999999999988 43333 24589999999999999998876
Q ss_pred ccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHHHHHHhccCCcEEE
Q psy1420 123 ESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFL 202 (241)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~ 202 (241)
..+. ++.+..+|+...+.+.++||+|++........++..+++++.++|||||+++
T Consensus 73 ---------------------~~~~---~~~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~ 128 (202)
T 2kw5_A 73 ---------------------EKGV---KITTVQSNLADFDIVADAWEGIVSIFCHLPSSLRQQLYPKVYQGLKPGGVFI 128 (202)
T ss_dssp ---------------------HHTC---CEEEECCBTTTBSCCTTTCSEEEEECCCCCHHHHHHHHHHHHTTCCSSEEEE
T ss_pred ---------------------hcCC---ceEEEEcChhhcCCCcCCccEEEEEhhcCCHHHHHHHHHHHHHhcCCCcEEE
Confidence 3332 4888999999888777899999986543334577899999999999999999
Q ss_pred EEecCH-------------------HHHHHHHHHCCCceEEEEEec
Q psy1420 203 CLEFSH-------------------EEFKSMIESAGFQYVTYENLT 229 (241)
Q Consensus 203 i~~~~~-------------------~~~~~~l~~~Gf~~~~~~~~~ 229 (241)
+.++.. +++.++++ ||++++.....
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~--Gf~v~~~~~~~ 172 (202)
T 2kw5_A 129 LEGFAPEQLQYNTGGPKDLDLLPKLETLQSELP--SLNWLIANNLE 172 (202)
T ss_dssp EEEECTTTGGGTSCCSSSGGGCCCHHHHHHHCS--SSCEEEEEEEE
T ss_pred EEEeccccccCCCCCCCcceeecCHHHHHHHhc--CceEEEEEEEE
Confidence 986322 88899998 99998887764
No 91
>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*
Probab=99.58 E-value=3.6e-14 Score=114.55 Aligned_cols=132 Identities=17% Similarity=0.185 Sum_probs=103.4
Q ss_pred HHHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHh
Q psy1420 30 LWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPR 109 (241)
Q Consensus 30 ~~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~ 109 (241)
.....+.+.+...++.+|||+|||+|..+ ..++. ...+++++|+++.+
T Consensus 20 ~~~~~~~~~~~~~~~~~vldiG~G~G~~~-------------~~l~~-------------------~~~~v~~~D~~~~~ 67 (192)
T 1l3i_A 20 EVRCLIMCLAEPGKNDVAVDVGCGTGGVT-------------LELAG-------------------RVRRVYAIDRNPEA 67 (192)
T ss_dssp HHHHHHHHHHCCCTTCEEEEESCTTSHHH-------------HHHHT-------------------TSSEEEEEESCHHH
T ss_pred HHHHHHHHhcCCCCCCEEEEECCCCCHHH-------------HHHHH-------------------hcCEEEEEECCHHH
Confidence 34556666677788899999999999988 44443 23679999999999
Q ss_pred HHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCC-CceeEEeeeehhhccccHHHHH
Q psy1420 110 LRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIES-DSYSAYTIAFGIRNVTRIDKAL 188 (241)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~~D~V~~~~~l~~~~~~~~~l 188 (241)
++.+++++. ..+.. +++.+.+.|+.. +.+. ++||+|++...++ +...++
T Consensus 68 ~~~a~~~~~-------------------------~~~~~-~~~~~~~~d~~~-~~~~~~~~D~v~~~~~~~---~~~~~l 117 (192)
T 1l3i_A 68 ISTTEMNLQ-------------------------RHGLG-DNVTLMEGDAPE-ALCKIPDIDIAVVGGSGG---ELQEIL 117 (192)
T ss_dssp HHHHHHHHH-------------------------HTTCC-TTEEEEESCHHH-HHTTSCCEEEEEESCCTT---CHHHHH
T ss_pred HHHHHHHHH-------------------------HcCCC-cceEEEecCHHH-hcccCCCCCEEEECCchH---HHHHHH
Confidence 999999887 44442 368888888776 2222 5899999887654 568899
Q ss_pred HHHHHhccCCcEEEEEecCH---HHHHHHHHHCCCceE
Q psy1420 189 SEAYRVLKPGGRFLCLEFSH---EEFKSMIESAGFQYV 223 (241)
Q Consensus 189 ~~~~~~LkpgG~l~i~~~~~---~~~~~~l~~~Gf~~~ 223 (241)
+.+.++|+|||.+++..... .++.+.+++.||.+.
T Consensus 118 ~~~~~~l~~gG~l~~~~~~~~~~~~~~~~l~~~g~~~~ 155 (192)
T 1l3i_A 118 RIIKDKLKPGGRIIVTAILLETKFEAMECLRDLGFDVN 155 (192)
T ss_dssp HHHHHTEEEEEEEEEEECBHHHHHHHHHHHHHTTCCCE
T ss_pred HHHHHhcCCCcEEEEEecCcchHHHHHHHHHHCCCceE
Confidence 99999999999999987766 677888999999543
No 92
>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}
Probab=99.58 E-value=8.4e-15 Score=127.23 Aligned_cols=129 Identities=15% Similarity=0.218 Sum_probs=101.6
Q ss_pred HhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHH
Q psy1420 36 IDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEA 115 (241)
Q Consensus 36 ~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~ 115 (241)
++.+...++.+|||+|||+|..+ ..++. ....++++|+++.+++.+++
T Consensus 113 ~~~~~~~~~~~vLD~GcG~G~~~-------------~~l~~-------------------~g~~v~~vD~s~~~~~~a~~ 160 (286)
T 3m70_A 113 VDAAKIISPCKVLDLGCGQGRNS-------------LYLSL-------------------LGYDVTSWDHNENSIAFLNE 160 (286)
T ss_dssp HHHHHHSCSCEEEEESCTTCHHH-------------HHHHH-------------------TTCEEEEEESCHHHHHHHHH
T ss_pred HHHhhccCCCcEEEECCCCCHHH-------------HHHHH-------------------CCCeEEEEECCHHHHHHHHH
Confidence 33333347789999999999988 44444 34589999999999999999
Q ss_pred HHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhcccc--HHHHHHHHHH
Q psy1420 116 NAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTR--IDKALSEAYR 193 (241)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~--~~~~l~~~~~ 193 (241)
++. ..++ ++++.++|+...+. .++||+|+++.+++++++ ...+++++.+
T Consensus 161 ~~~-------------------------~~~~---~~~~~~~d~~~~~~-~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~ 211 (286)
T 3m70_A 161 TKE-------------------------KENL---NISTALYDINAANI-QENYDFIVSTVVFMFLNRERVPSIIKNMKE 211 (286)
T ss_dssp HHH-------------------------HTTC---CEEEEECCGGGCCC-CSCEEEEEECSSGGGSCGGGHHHHHHHHHH
T ss_pred HHH-------------------------HcCC---ceEEEEeccccccc-cCCccEEEEccchhhCCHHHHHHHHHHHHH
Confidence 887 4443 58999999998876 678999999999998854 5699999999
Q ss_pred hccCCcEEEEEec----------------CHHHHHHHHHHCCCceEEEEE
Q psy1420 194 VLKPGGRFLCLEF----------------SHEEFKSMIESAGFQYVTYEN 227 (241)
Q Consensus 194 ~LkpgG~l~i~~~----------------~~~~~~~~l~~~Gf~~~~~~~ 227 (241)
+|||||++++... ..+++.+++.. |+++.+..
T Consensus 212 ~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~ 259 (286)
T 3m70_A 212 HTNVGGYNLIVAAMSTDDVPCPLPFSFTFAENELKEYYKD--WEFLEYNE 259 (286)
T ss_dssp TEEEEEEEEEEEEBCCSSSCCSSCCSCCBCTTHHHHHTTT--SEEEEEEC
T ss_pred hcCCCcEEEEEEecCCCCCCCCCCccccCCHHHHHHHhcC--CEEEEEEc
Confidence 9999999777542 12788888755 88877753
No 93
>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}
Probab=99.57 E-value=6.3e-15 Score=129.40 Aligned_cols=155 Identities=17% Similarity=0.180 Sum_probs=100.8
Q ss_pred CCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCC
Q psy1420 43 HDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPI 122 (241)
Q Consensus 43 ~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~ 122 (241)
++.+|||+|||+|..+ ..++. .. ....++++|+++.+++.+++++.....
T Consensus 46 ~~~~VLDiGCG~G~~~-------------~~la~----~~-------------~~~~v~gvDis~~~i~~A~~~~~~~~~ 95 (292)
T 3g07_A 46 RGRDVLDLGCNVGHLT-------------LSIAC----KW-------------GPSRMVGLDIDSRLIHSARQNIRHYLS 95 (292)
T ss_dssp TTSEEEEESCTTCHHH-------------HHHHH----HT-------------CCSEEEEEESCHHHHHHHHHTC-----
T ss_pred CCCcEEEeCCCCCHHH-------------HHHHH----Hc-------------CCCEEEEECCCHHHHHHHHHHHHhhhh
Confidence 6789999999999988 44433 10 246899999999999999987652210
Q ss_pred c-----------------------cccccccceecceeeeee---------ccccCCCCCCeeEEecccCCCC-----CC
Q psy1420 123 E-----------------------SDSYSAYTIAFGIRNVTR---------IDKIDIPNPRLRFLEANAEELP-----IE 165 (241)
Q Consensus 123 ~-----------------------~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~d~~~~~-----~~ 165 (241)
. .+...+.++......... .....++ .++++.++|+...+ ..
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~p~~~~~~~~~~~~p-~~v~f~~~d~~~~~~~~~~~~ 174 (292)
T 3g07_A 96 EELRLPPQTLEGDPGAEGEEGTTTVRKRSCFPASLTASRGPIAAPQVPLDGADTSVFP-NNVVFVTGNYVLDRDDLVEAQ 174 (292)
T ss_dssp ----------------------------------------------CCSSTTCCSSTT-TTEEEEECCCCCSSHHHHTTC
T ss_pred hhccccccccccccccccccccccccccccccchhhhccCcccccccccccccccccc-ccceEEecccccCcccccccc
Confidence 0 000001111111100000 0011122 47999999987654 45
Q ss_pred CCceeEEeeeehhhccc------cHHHHHHHHHHhccCCcEEEEEecCH------------------------HHHHHHH
Q psy1420 166 SDSYSAYTIAFGIRNVT------RIDKALSEAYRVLKPGGRFLCLEFSH------------------------EEFKSMI 215 (241)
Q Consensus 166 ~~~~D~V~~~~~l~~~~------~~~~~l~~~~~~LkpgG~l~i~~~~~------------------------~~~~~~l 215 (241)
.++||+|+|..+++++. ++.+++++++++|+|||+|++..... +++.++|
T Consensus 175 ~~~fD~I~~~~vl~~ihl~~~~~~~~~~l~~~~~~LkpGG~lil~~~~~~~y~~~~~~~~~~~~~~~~~~~~p~~~~~~L 254 (292)
T 3g07_A 175 TPEYDVVLCLSLTKWVHLNWGDEGLKRMFRRIYRHLRPGGILVLEPQPWSSYGKRKTLTETIYKNYYRIQLKPEQFSSYL 254 (292)
T ss_dssp CCCEEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCCHHHHHTTTTSCHHHHHHHHHCCCCGGGHHHHH
T ss_pred CCCcCEEEEChHHHHhhhcCCHHHHHHHHHHHHHHhCCCcEEEEecCCchhhhhhhcccHHHHhhhhcEEEcHHHHHHHH
Confidence 67999999999987664 77899999999999999999864322 7888999
Q ss_pred HH--CCCceEEEEEe
Q psy1420 216 ES--AGFQYVTYENL 228 (241)
Q Consensus 216 ~~--~Gf~~~~~~~~ 228 (241)
.+ +||..++....
T Consensus 255 ~~~~~GF~~~~~~~~ 269 (292)
T 3g07_A 255 TSPDVGFSSYELVAT 269 (292)
T ss_dssp TSTTTCCCEEEEC--
T ss_pred HhcCCCceEEEEecc
Confidence 98 99987776544
No 94
>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*
Probab=99.57 E-value=4.7e-14 Score=127.31 Aligned_cols=147 Identities=17% Similarity=0.201 Sum_probs=115.3
Q ss_pred HHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHH
Q psy1420 33 DIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRF 112 (241)
Q Consensus 33 ~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~ 112 (241)
..+.+.++..+..+|+|||||+|..+ ..++. .. +..+.+..|. |.+++.
T Consensus 169 ~~~~~~~~~~~~~~v~DvGgG~G~~~-------------~~l~~-------~~----------p~~~~~~~dl-p~v~~~ 217 (353)
T 4a6d_A 169 RSVLTAFDLSVFPLMCDLGGGAGALA-------------KECMS-------LY----------PGCKITVFDI-PEVVWT 217 (353)
T ss_dssp HHHHHSSCGGGCSEEEEETCTTSHHH-------------HHHHH-------HC----------SSCEEEEEEC-HHHHHH
T ss_pred HHHHHhcCcccCCeEEeeCCCCCHHH-------------HHHHH-------hC----------CCceeEeccC-HHHHHH
Confidence 44556666677789999999999988 44443 11 3456778886 778888
Q ss_pred HHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccH--HHHHHH
Q psy1420 113 LEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRI--DKALSE 190 (241)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~--~~~l~~ 190 (241)
+++... ..+ .+++++..+|+...|.+ .+|+|++..++|++++. .++|++
T Consensus 218 a~~~~~-------------------------~~~--~~rv~~~~gD~~~~~~~--~~D~~~~~~vlh~~~d~~~~~iL~~ 268 (353)
T 4a6d_A 218 AKQHFS-------------------------FQE--EEQIDFQEGDFFKDPLP--EADLYILARVLHDWADGKCSHLLER 268 (353)
T ss_dssp HHHHSC-------------------------C----CCSEEEEESCTTTSCCC--CCSEEEEESSGGGSCHHHHHHHHHH
T ss_pred HHHhhh-------------------------hcc--cCceeeecCccccCCCC--CceEEEeeeecccCCHHHHHHHHHH
Confidence 887765 333 25899999999876654 47999999999999887 478999
Q ss_pred HHHhccCCcEEEEEecCH----------------------------HHHHHHHHHCCCceEEEEEecCceeEEEeeec
Q psy1420 191 AYRVLKPGGRFLCLEFSH----------------------------EEFKSMIESAGFQYVTYENLTFGVVAIHSGFK 240 (241)
Q Consensus 191 ~~~~LkpgG~l~i~~~~~----------------------------~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~~ 240 (241)
+++.|+|||++++.+... ++|+++++++||+.+++... .+...+++|+|
T Consensus 269 ~~~al~pgg~lli~e~~~~~~~~~~~~~~~~dl~ml~~~~g~ert~~e~~~ll~~AGf~~v~v~~~-~~~~~~i~ArK 345 (353)
T 4a6d_A 269 IYHTCKPGGGILVIESLLDEDRRGPLLTQLYSLNMLVQTEGQERTPTHYHMLLSSAGFRDFQFKKT-GAIYDAILARK 345 (353)
T ss_dssp HHHHCCTTCEEEEEECCCCTTSCCCHHHHHHHHHHHHSSSCCCCCHHHHHHHHHHHTCEEEEEECC-SSSCEEEEEEC
T ss_pred HHhhCCCCCEEEEEEeeeCCCCCCCHHHHHHHHHHHHhCCCcCCCHHHHHHHHHHCCCceEEEEEc-CCceEEEEEEe
Confidence 999999999999987432 78999999999999998775 55667888887
No 95
>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}
Probab=99.57 E-value=9.6e-15 Score=123.82 Aligned_cols=125 Identities=10% Similarity=0.091 Sum_probs=99.9
Q ss_pred CCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcC
Q psy1420 41 PTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEEL 120 (241)
Q Consensus 41 ~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~ 120 (241)
..++.+|||+|||+|.++ ..++. ...+++++|+++.+++.++++..
T Consensus 54 ~~~~~~vLD~GcG~G~~~-------------~~la~-------------------~~~~v~gvD~s~~~~~~a~~~~~-- 99 (245)
T 3ggd_A 54 FNPELPLIDFACGNGTQT-------------KFLSQ-------------------FFPRVIGLDVSKSALEIAAKENT-- 99 (245)
T ss_dssp SCTTSCEEEETCTTSHHH-------------HHHHH-------------------HSSCEEEEESCHHHHHHHHHHSC--
T ss_pred cCCCCeEEEEcCCCCHHH-------------HHHHH-------------------hCCCEEEEECCHHHHHHHHHhCc--
Confidence 467789999999999988 44444 23479999999999999987754
Q ss_pred CCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCC-----CceeEEeeeehhhccc--cHHHHHHHHHH
Q psy1420 121 PIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIES-----DSYSAYTIAFGIRNVT--RIDKALSEAYR 193 (241)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~-----~~~D~V~~~~~l~~~~--~~~~~l~~~~~ 193 (241)
. .++++.++|+..++... ..||+|++..++++++ +...+++++.+
T Consensus 100 -----------------------~-----~~~~~~~~d~~~~~~~~~~~~~~~~d~v~~~~~~~~~~~~~~~~~l~~~~~ 151 (245)
T 3ggd_A 100 -----------------------A-----ANISYRLLDGLVPEQAAQIHSEIGDANIYMRTGFHHIPVEKRELLGQSLRI 151 (245)
T ss_dssp -----------------------C-----TTEEEEECCTTCHHHHHHHHHHHCSCEEEEESSSTTSCGGGHHHHHHHHHH
T ss_pred -----------------------c-----cCceEEECcccccccccccccccCccEEEEcchhhcCCHHHHHHHHHHHHH
Confidence 1 36889999998865321 2489999999999998 78999999999
Q ss_pred hccCCcEEEEEecCH-----------------------------------HHHHHHHHHCCCceEEEEEec
Q psy1420 194 VLKPGGRFLCLEFSH-----------------------------------EEFKSMIESAGFQYVTYENLT 229 (241)
Q Consensus 194 ~LkpgG~l~i~~~~~-----------------------------------~~~~~~l~~~Gf~~~~~~~~~ 229 (241)
+|||||++++.++.. +++.+++ +||+++......
T Consensus 152 ~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--aGf~~~~~~~~~ 220 (245)
T 3ggd_A 152 LLGKQGAMYLIELGTGCIDFFNSLLEKYGQLPYELLLVMEHGIRPGIFTAEDIELYF--PDFEILSQGEGL 220 (245)
T ss_dssp HHTTTCEEEEEEECTTHHHHHHHHHHHHSSCCHHHHHHHTTTCCCCCCCHHHHHHHC--TTEEEEEEECCB
T ss_pred HcCCCCEEEEEeCCccccHHHHHHHhCCCCCchhhhhccccCCCCCccCHHHHHHHh--CCCEEEeccccc
Confidence 999999999887542 5667777 899988776543
No 96
>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}
Probab=99.56 E-value=3e-14 Score=117.76 Aligned_cols=135 Identities=12% Similarity=0.049 Sum_probs=104.9
Q ss_pred CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCC
Q psy1420 42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP 121 (241)
Q Consensus 42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~ 121 (241)
.++.+|||+|||+|..+ ..+.. .....++++|+++.+++.+++++.
T Consensus 59 ~~~~~vLDiG~G~G~~~-------------~~l~~------------------~~~~~v~~vD~s~~~~~~a~~~~~--- 104 (205)
T 3grz_A 59 VKPLTVADVGTGSGILA-------------IAAHK------------------LGAKSVLATDISDESMTAAEENAA--- 104 (205)
T ss_dssp SSCCEEEEETCTTSHHH-------------HHHHH------------------TTCSEEEEEESCHHHHHHHHHHHH---
T ss_pred cCCCEEEEECCCCCHHH-------------HHHHH------------------CCCCEEEEEECCHHHHHHHHHHHH---
Confidence 56789999999999887 33332 124589999999999999999887
Q ss_pred CccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHHHHHHhccCCcEE
Q psy1420 122 IESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRF 201 (241)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l 201 (241)
..++. ++++..+|+...+ .++||+|+++..+++ ...+++++.++|+|||++
T Consensus 105 ----------------------~~~~~--~v~~~~~d~~~~~--~~~fD~i~~~~~~~~---~~~~l~~~~~~L~~gG~l 155 (205)
T 3grz_A 105 ----------------------LNGIY--DIALQKTSLLADV--DGKFDLIVANILAEI---LLDLIPQLDSHLNEDGQV 155 (205)
T ss_dssp ----------------------HTTCC--CCEEEESSTTTTC--CSCEEEEEEESCHHH---HHHHGGGSGGGEEEEEEE
T ss_pred ----------------------HcCCC--ceEEEeccccccC--CCCceEEEECCcHHH---HHHHHHHHHHhcCCCCEE
Confidence 55544 3889999987653 578999999877754 478899999999999999
Q ss_pred EEEecCH---HHHHHHHHHCCCceEEEEEecCceeEEEeeec
Q psy1420 202 LCLEFSH---EEFKSMIESAGFQYVTYENLTFGVVAIHSGFK 240 (241)
Q Consensus 202 ~i~~~~~---~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~~ 240 (241)
++.++.. +++.++++++||+.++.... .+-..+...++
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~~-~~w~~~~~~~~ 196 (205)
T 3grz_A 156 IFSGIDYLQLPKIEQALAENSFQIDLKMRA-GRWIGLAISRK 196 (205)
T ss_dssp EEEEEEGGGHHHHHHHHHHTTEEEEEEEEE-TTEEEEEEEEC
T ss_pred EEEecCcccHHHHHHHHHHcCCceEEeecc-CCEEEEEEecc
Confidence 9875444 88999999999998887664 44444444443
No 97
>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*
Probab=99.55 E-value=2.4e-14 Score=116.30 Aligned_cols=130 Identities=13% Similarity=0.168 Sum_probs=94.5
Q ss_pred CCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcC
Q psy1420 41 PTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEEL 120 (241)
Q Consensus 41 ~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~ 120 (241)
.+++.+|||+|||+|..+ ..++. ...+++++|+++.+++.+++++.
T Consensus 20 ~~~~~~vLDiGcG~G~~~-------------~~la~-------------------~~~~v~~vD~s~~~l~~a~~~~~-- 65 (185)
T 3mti_A 20 LDDESIVVDATMGNGNDT-------------AFLAG-------------------LSKKVYAFDVQEQALGKTSQRLS-- 65 (185)
T ss_dssp CCTTCEEEESCCTTSHHH-------------HHHHT-------------------TSSEEEEEESCHHHHHHHHHHHH--
T ss_pred CCCCCEEEEEcCCCCHHH-------------HHHHH-------------------hCCEEEEEECCHHHHHHHHHHHH--
Confidence 357789999999999988 44444 25689999999999999999987
Q ss_pred CCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCC-CCCCceeEEeeeehhh---------ccccHHHHHHH
Q psy1420 121 PIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELP-IESDSYSAYTIAFGIR---------NVTRIDKALSE 190 (241)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~D~V~~~~~l~---------~~~~~~~~l~~ 190 (241)
..++. ++++++.+...++ ..+++||+|+++.... ...+...++++
T Consensus 66 -----------------------~~~~~--~v~~~~~~~~~l~~~~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~ 120 (185)
T 3mti_A 66 -----------------------DLGIE--NTELILDGHENLDHYVREPIRAAIFNLGYLPSADKSVITKPHTTLEAIEK 120 (185)
T ss_dssp -----------------------HHTCC--CEEEEESCGGGGGGTCCSCEEEEEEEEC-----------CHHHHHHHHHH
T ss_pred -----------------------HcCCC--cEEEEeCcHHHHHhhccCCcCEEEEeCCCCCCcchhcccChhhHHHHHHH
Confidence 55553 6888887777643 3467899998874322 12345688999
Q ss_pred HHHhccCCcEEEEEecCH--------HHHHHHHH---HCCCceEEEEEec
Q psy1420 191 AYRVLKPGGRFLCLEFSH--------EEFKSMIE---SAGFQYVTYENLT 229 (241)
Q Consensus 191 ~~~~LkpgG~l~i~~~~~--------~~~~~~l~---~~Gf~~~~~~~~~ 229 (241)
+.++|||||++++..+.. +.+.++++ ..+|.+..+..++
T Consensus 121 ~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 170 (185)
T 3mti_A 121 ILDRLEVGGRLAIMIYYGHDGGDMEKDAVLEYVIGLDQRVFTAMLYQPLN 170 (185)
T ss_dssp HHHHEEEEEEEEEEEC------CHHHHHHHHHHHHSCTTTEEEEEEEESS
T ss_pred HHHhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEEEehhhc
Confidence 999999999999987653 34444554 4557777666553
No 98
>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}
Probab=99.55 E-value=7.4e-14 Score=112.08 Aligned_cols=130 Identities=15% Similarity=0.219 Sum_probs=105.1
Q ss_pred HHHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHh
Q psy1420 30 LWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPR 109 (241)
Q Consensus 30 ~~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~ 109 (241)
...+.+.+.+...++.+|||+|||+|..+ ..++. ...+++++|+++.+
T Consensus 22 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~-------------~~l~~-------------------~~~~v~~vD~~~~~ 69 (183)
T 2yxd_A 22 EIRAVSIGKLNLNKDDVVVDVGCGSGGMT-------------VEIAK-------------------RCKFVYAIDYLDGA 69 (183)
T ss_dssp HHHHHHHHHHCCCTTCEEEEESCCCSHHH-------------HHHHT-------------------TSSEEEEEECSHHH
T ss_pred HHHHHHHHHcCCCCCCEEEEeCCCCCHHH-------------HHHHh-------------------cCCeEEEEeCCHHH
Confidence 34556666777778889999999999988 33333 35689999999999
Q ss_pred HHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHH
Q psy1420 110 LRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALS 189 (241)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~ 189 (241)
++.+++++. ..+++ ++++.++|+.. +.+.++||+|++... .++..+++
T Consensus 70 ~~~a~~~~~-------------------------~~~~~--~~~~~~~d~~~-~~~~~~~D~i~~~~~----~~~~~~l~ 117 (183)
T 2yxd_A 70 IEVTKQNLA-------------------------KFNIK--NCQIIKGRAED-VLDKLEFNKAFIGGT----KNIEKIIE 117 (183)
T ss_dssp HHHHHHHHH-------------------------HTTCC--SEEEEESCHHH-HGGGCCCSEEEECSC----SCHHHHHH
T ss_pred HHHHHHHHH-------------------------HcCCC--cEEEEECCccc-cccCCCCcEEEECCc----ccHHHHHH
Confidence 999999987 54543 68899999877 555578999999877 67889999
Q ss_pred HHHHhccCCcEEEEEecCH---HHHHHHHHHCCCceEEE
Q psy1420 190 EAYRVLKPGGRFLCLEFSH---EEFKSMIESAGFQYVTY 225 (241)
Q Consensus 190 ~~~~~LkpgG~l~i~~~~~---~~~~~~l~~~Gf~~~~~ 225 (241)
++.++ |||.+++..... .++.+.++++||.+...
T Consensus 118 ~~~~~--~gG~l~~~~~~~~~~~~~~~~l~~~g~~~~~~ 154 (183)
T 2yxd_A 118 ILDKK--KINHIVANTIVLENAAKIINEFESRGYNVDAV 154 (183)
T ss_dssp HHHHT--TCCEEEEEESCHHHHHHHHHHHHHTTCEEEEE
T ss_pred HHhhC--CCCEEEEEecccccHHHHHHHHHHcCCeEEEE
Confidence 99998 999999988776 67888999999876554
No 99
>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}
Probab=99.55 E-value=2.3e-14 Score=116.08 Aligned_cols=126 Identities=12% Similarity=0.005 Sum_probs=99.5
Q ss_pred CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCC
Q psy1420 42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP 121 (241)
Q Consensus 42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~ 121 (241)
.++.+|||+|||+|..+ ..++. .. .++++|+++.+++. .
T Consensus 22 ~~~~~vLD~GcG~G~~~-------------~~l~~-------------------~~-~v~gvD~s~~~~~~-----~--- 60 (170)
T 3q87_B 22 LEMKIVLDLGTSTGVIT-------------EQLRK-------------------RN-TVVSTDLNIRALES-----H--- 60 (170)
T ss_dssp CCSCEEEEETCTTCHHH-------------HHHTT-------------------TS-EEEEEESCHHHHHT-----C---
T ss_pred CCCCeEEEeccCccHHH-------------HHHHh-------------------cC-cEEEEECCHHHHhc-----c---
Confidence 45669999999999988 44444 34 89999999999877 2
Q ss_pred CccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccH---------HHHHHHHH
Q psy1420 122 IESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRI---------DKALSEAY 192 (241)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~---------~~~l~~~~ 192 (241)
.++++.++|+.+ +.+.++||+|+++..+++.++. ...+.++.
T Consensus 61 ----------------------------~~~~~~~~d~~~-~~~~~~fD~i~~n~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (170)
T 3q87_B 61 ----------------------------RGGNLVRADLLC-SINQESVDVVVFNPPYVPDTDDPIIGGGYLGREVIDRFV 111 (170)
T ss_dssp ----------------------------SSSCEEECSTTT-TBCGGGCSEEEECCCCBTTCCCTTTBCCGGGCHHHHHHH
T ss_pred ----------------------------cCCeEEECChhh-hcccCCCCEEEECCCCccCCccccccCCcchHHHHHHHH
Confidence 257889999887 4555799999998877754443 57888888
Q ss_pred HhccCCcEEEEEecCH---HHHHHHHHHCCCceEEEEEecCceeEEEee
Q psy1420 193 RVLKPGGRFLCLEFSH---EEFKSMIESAGFQYVTYENLTFGVVAIHSG 238 (241)
Q Consensus 193 ~~LkpgG~l~i~~~~~---~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~ 238 (241)
+.+ |||++++..... +++.++++++||+.+.+.....|.-.+++.
T Consensus 112 ~~l-pgG~l~~~~~~~~~~~~l~~~l~~~gf~~~~~~~~~~~~e~~~~~ 159 (170)
T 3q87_B 112 DAV-TVGMLYLLVIEANRPKEVLARLEERGYGTRILKVRKILGETVYII 159 (170)
T ss_dssp HHC-CSSEEEEEEEGGGCHHHHHHHHHHTTCEEEEEEEEECSSSEEEEE
T ss_pred hhC-CCCEEEEEEecCCCHHHHHHHHHHCCCcEEEEEeeccCCceEEEE
Confidence 888 999999876443 889999999999999888887666555443
No 100
>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}
Probab=99.54 E-value=1.6e-13 Score=115.24 Aligned_cols=136 Identities=14% Similarity=0.112 Sum_probs=100.3
Q ss_pred CCCCCCeEEEEecC-CCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHh
Q psy1420 40 GPTHDTKLLDVAGG-TDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAE 118 (241)
Q Consensus 40 ~~~~~~~vLdvG~G-~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~ 118 (241)
..+++.+|||+||| +|..+ ..++. . ...+++++|+++.+++.+++++.
T Consensus 52 ~~~~~~~vLDlG~G~~G~~~-------------~~la~----~--------------~~~~v~~vD~s~~~~~~a~~~~~ 100 (230)
T 3evz_A 52 FLRGGEVALEIGTGHTAMMA-------------LMAEK----F--------------FNCKVTATEVDEEFFEYARRNIE 100 (230)
T ss_dssp TCCSSCEEEEECCTTTCHHH-------------HHHHH----H--------------HCCEEEEEECCHHHHHHHHHHHH
T ss_pred hcCCCCEEEEcCCCHHHHHH-------------HHHHH----h--------------cCCEEEEEECCHHHHHHHHHHHH
Confidence 34678899999999 99988 44433 1 14679999999999999999987
Q ss_pred cCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCC-CCCCCceeEEeeeehhhccc---------------
Q psy1420 119 ELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL-PIESDSYSAYTIAFGIRNVT--------------- 182 (241)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~D~V~~~~~l~~~~--------------- 182 (241)
..++ +++++++|+... +.++++||+|+++...+...
T Consensus 101 -------------------------~~~~---~v~~~~~d~~~~~~~~~~~fD~I~~npp~~~~~~~~~~~~~~~~~~~~ 152 (230)
T 3evz_A 101 -------------------------RNNS---NVRLVKSNGGIIKGVVEGTFDVIFSAPPYYDKPLGRVLTEREAIGGGK 152 (230)
T ss_dssp -------------------------HTTC---CCEEEECSSCSSTTTCCSCEEEEEECCCCC---------------CCS
T ss_pred -------------------------HhCC---CcEEEeCCchhhhhcccCceeEEEECCCCcCCccccccChhhhhccCc
Confidence 4443 488999996533 34467899999875443322
Q ss_pred ----cHHHHHHHHHHhccCCcEEEEEecCH----HHHHHHHHHCCCceEEEEEecCceeE
Q psy1420 183 ----RIDKALSEAYRVLKPGGRFLCLEFSH----EEFKSMIESAGFQYVTYENLTFGVVA 234 (241)
Q Consensus 183 ----~~~~~l~~~~~~LkpgG~l~i~~~~~----~~~~~~l~~~Gf~~~~~~~~~~~~~~ 234 (241)
.+..+++++.++|||||++++..... +++.+.++++||.+..+....+....
T Consensus 153 ~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~g~~~~ 212 (230)
T 3evz_A 153 YGEEFSVKLLEEAFDHLNPGGKVALYLPDKEKLLNVIKERGIKLGYSVKDIKFKVGTRWR 212 (230)
T ss_dssp SSCHHHHHHHHHHGGGEEEEEEEEEEEESCHHHHHHHHHHHHHTTCEEEEEEECCCC-CE
T ss_pred cchHHHHHHHHHHHHHhCCCeEEEEEecccHhHHHHHHHHHHHcCCceEEEEecCCCeEE
Confidence 24789999999999999998864332 78889999999987776554443333
No 101
>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}
Probab=99.54 E-value=1e-14 Score=122.90 Aligned_cols=117 Identities=21% Similarity=0.285 Sum_probs=95.5
Q ss_pred CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCC
Q psy1420 42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP 121 (241)
Q Consensus 42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~ 121 (241)
.++.+|||+|||+|..+ ..++. ...+++++|+++.+++.++++.
T Consensus 47 ~~~~~vLDiGcG~G~~~-------------~~l~~-------------------~~~~v~~vD~s~~~~~~a~~~~---- 90 (226)
T 3m33_A 47 TPQTRVLEAGCGHGPDA-------------ARFGP-------------------QAARWAAYDFSPELLKLARANA---- 90 (226)
T ss_dssp CTTCEEEEESCTTSHHH-------------HHHGG-------------------GSSEEEEEESCHHHHHHHHHHC----
T ss_pred CCCCeEEEeCCCCCHHH-------------HHHHH-------------------cCCEEEEEECCHHHHHHHHHhC----
Confidence 46789999999999988 44444 3568999999999999998773
Q ss_pred CccccccccceecceeeeeeccccCCCCCCeeEEeccc-CCCCCC-CCceeEEeeeehhhccccHHHHHHHHHHhccCCc
Q psy1420 122 IESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANA-EELPIE-SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGG 199 (241)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~-~~~~~~-~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG 199 (241)
++++++++|+ ..+|.+ +++||+|+++ .++..+++++.++|||||
T Consensus 91 ----------------------------~~~~~~~~d~~~~~~~~~~~~fD~v~~~------~~~~~~l~~~~~~LkpgG 136 (226)
T 3m33_A 91 ----------------------------PHADVYEWNGKGELPAGLGAPFGLIVSR------RGPTSVILRLPELAAPDA 136 (226)
T ss_dssp ----------------------------TTSEEEECCSCSSCCTTCCCCEEEEEEE------SCCSGGGGGHHHHEEEEE
T ss_pred ----------------------------CCceEEEcchhhccCCcCCCCEEEEEeC------CCHHHHHHHHHHHcCCCc
Confidence 2588999998 567777 7899999986 467788999999999999
Q ss_pred EEEEEe--cCHHHHHHHHHHCCCceEEEEEe
Q psy1420 200 RFLCLE--FSHEEFKSMIESAGFQYVTYENL 228 (241)
Q Consensus 200 ~l~i~~--~~~~~~~~~l~~~Gf~~~~~~~~ 228 (241)
+++... ...+++.+.++++||........
T Consensus 137 ~l~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~ 167 (226)
T 3m33_A 137 HFLYVGPRLNVPEVPERLAAVGWDIVAEDHV 167 (226)
T ss_dssp EEEEEESSSCCTHHHHHHHHTTCEEEEEEEE
T ss_pred EEEEeCCcCCHHHHHHHHHHCCCeEEEEEee
Confidence 998332 23389999999999998877654
No 102
>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*
Probab=99.53 E-value=1.1e-13 Score=125.50 Aligned_cols=140 Identities=17% Similarity=0.231 Sum_probs=105.4
Q ss_pred HHHHhhcC-CCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHH
Q psy1420 33 DIFIDRLG-PTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLR 111 (241)
Q Consensus 33 ~~~~~~l~-~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~ 111 (241)
..+++.+. ..+..+|||+|||+|..+ ..++. . . +..+++++|+ +.+++
T Consensus 192 ~~~~~~~~~~~~~~~vlDvG~G~G~~~-------------~~l~~----~---~----------p~~~~~~~D~-~~~~~ 240 (368)
T 3reo_A 192 KKILEMYNGFEGLTTIVDVGGGTGAVA-------------SMIVA----K---Y----------PSINAINFDL-PHVIQ 240 (368)
T ss_dssp HHHHTTCCTTTTCSEEEEETCTTSHHH-------------HHHHH----H---C----------TTCEEEEEEC-HHHHT
T ss_pred HHHHHhcccccCCCEEEEeCCCcCHHH-------------HHHHH----h---C----------CCCEEEEEeh-HHHHH
Confidence 44555555 566789999999999988 44443 0 1 3457899999 77665
Q ss_pred HHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHH--HHHH
Q psy1420 112 FLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRID--KALS 189 (241)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~--~~l~ 189 (241)
.+++ .+++++..+|+.+ +.+.. |+|++..++|++++.+ ++|+
T Consensus 241 ~a~~---------------------------------~~~v~~~~~d~~~-~~p~~--D~v~~~~vlh~~~~~~~~~~l~ 284 (368)
T 3reo_A 241 DAPA---------------------------------FSGVEHLGGDMFD-GVPKG--DAIFIKWICHDWSDEHCLKLLK 284 (368)
T ss_dssp TCCC---------------------------------CTTEEEEECCTTT-CCCCC--SEEEEESCGGGBCHHHHHHHHH
T ss_pred hhhh---------------------------------cCCCEEEecCCCC-CCCCC--CEEEEechhhcCCHHHHHHHHH
Confidence 4321 0368999999886 56543 9999999999988764 8899
Q ss_pred HHHHhccCCcEEEEEecCH--------------------------------HHHHHHHHHCCCceEEEEEecCceeEEEe
Q psy1420 190 EAYRVLKPGGRFLCLEFSH--------------------------------EEFKSMIESAGFQYVTYENLTFGVVAIHS 237 (241)
Q Consensus 190 ~~~~~LkpgG~l~i~~~~~--------------------------------~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~ 237 (241)
+++++|||||++++.+... ++|+++++++||+.+++.....+.. ++.
T Consensus 285 ~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~rt~~e~~~ll~~AGF~~v~~~~~~~~~~-vie 363 (368)
T 3reo_A 285 NCYAALPDHGKVIVAEYILPPSPDPSIATKVVIHTDALMLAYNPGGKERTEKEFQALAMASGFRGFKVASCAFNTY-VME 363 (368)
T ss_dssp HHHHHSCTTCEEEEEECCCCSSCCCCHHHHHHHHHHHHHHHHSSBCCCCCHHHHHHHHHHTTCCEEEEEEEETTEE-EEE
T ss_pred HHHHHcCCCCEEEEEEeccCCCCCCchhhhHHHhhhHHHHhhcCCCccCCHHHHHHHHHHCCCeeeEEEEeCCCcE-EEE
Confidence 9999999999999976421 7899999999999999998876644 444
Q ss_pred eec
Q psy1420 238 GFK 240 (241)
Q Consensus 238 ~~~ 240 (241)
.+|
T Consensus 364 ~~k 366 (368)
T 3reo_A 364 FLK 366 (368)
T ss_dssp EEC
T ss_pred EEe
Confidence 444
No 103
>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*
Probab=99.53 E-value=5.4e-14 Score=121.21 Aligned_cols=127 Identities=17% Similarity=0.159 Sum_probs=100.6
Q ss_pred CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCC
Q psy1420 42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP 121 (241)
Q Consensus 42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~ 121 (241)
.++.+|||+|||+|..+ ..++. . .+..+++++|+++.+++.+++++.
T Consensus 79 ~~~~~vLDiG~G~G~~~-------------i~la~----~-------------~~~~~v~~vD~s~~~~~~a~~~~~--- 125 (249)
T 3g89_A 79 QGPLRVLDLGTGAGFPG-------------LPLKI----V-------------RPELELVLVDATRKKVAFVERAIE--- 125 (249)
T ss_dssp CSSCEEEEETCTTTTTH-------------HHHHH----H-------------CTTCEEEEEESCHHHHHHHHHHHH---
T ss_pred CCCCEEEEEcCCCCHHH-------------HHHHH----H-------------CCCCEEEEEECCHHHHHHHHHHHH---
Confidence 56789999999999988 33322 1 035689999999999999999988
Q ss_pred CccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCC---CCceeEEeeeehhhccccHHHHHHHHHHhccCC
Q psy1420 122 IESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIE---SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPG 198 (241)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~---~~~~D~V~~~~~l~~~~~~~~~l~~~~~~Lkpg 198 (241)
..++. +++++++|+++.+.. .++||+|++. .+.+...+++.+.++||||
T Consensus 126 ----------------------~~~l~--~v~~~~~d~~~~~~~~~~~~~fD~I~s~----a~~~~~~ll~~~~~~Lkpg 177 (249)
T 3g89_A 126 ----------------------VLGLK--GARALWGRAEVLAREAGHREAYARAVAR----AVAPLCVLSELLLPFLEVG 177 (249)
T ss_dssp ----------------------HHTCS--SEEEEECCHHHHTTSTTTTTCEEEEEEE----SSCCHHHHHHHHGGGEEEE
T ss_pred ----------------------HhCCC--ceEEEECcHHHhhcccccCCCceEEEEC----CcCCHHHHHHHHHHHcCCC
Confidence 55665 599999999887542 4789999984 3567789999999999999
Q ss_pred cEEEEEecC--H---HHHHHHHHHCCCceEEEEEec
Q psy1420 199 GRFLCLEFS--H---EEFKSMIESAGFQYVTYENLT 229 (241)
Q Consensus 199 G~l~i~~~~--~---~~~~~~l~~~Gf~~~~~~~~~ 229 (241)
|++++..-. . .++...++..||.+.++..++
T Consensus 178 G~l~~~~g~~~~~e~~~~~~~l~~~G~~~~~~~~~~ 213 (249)
T 3g89_A 178 GAAVAMKGPRVEEELAPLPPALERLGGRLGEVLALQ 213 (249)
T ss_dssp EEEEEEECSCCHHHHTTHHHHHHHHTEEEEEEEEEE
T ss_pred eEEEEEeCCCcHHHHHHHHHHHHHcCCeEEEEEEee
Confidence 999886532 2 556778889999998887764
No 104
>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}
Probab=99.53 E-value=3.3e-15 Score=123.03 Aligned_cols=153 Identities=15% Similarity=0.087 Sum_probs=96.8
Q ss_pred HHHHHHHHhhcCC-CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCCh
Q psy1420 29 RLWKDIFIDRLGP-THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPN 107 (241)
Q Consensus 29 ~~~~~~~~~~l~~-~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~ 107 (241)
..+.+.+++.+.. .++.+|||+|||+|..+ ..++. .. ...+++++|+++
T Consensus 15 ~~~~~~~~~~l~~~~~~~~vLDiG~G~G~~~-------------~~l~~----~~-------------~~~~v~~vD~~~ 64 (215)
T 4dzr_A 15 EVLVEEAIRFLKRMPSGTRVIDVGTGSGCIA-------------VSIAL----AC-------------PGVSVTAVDLSM 64 (215)
T ss_dssp HHHHHHHHHHHTTCCTTEEEEEEESSBCHHH-------------HHHHH----HC-------------TTEEEEEEECC-
T ss_pred HHHHHHHHHHhhhcCCCCEEEEecCCHhHHH-------------HHHHH----hC-------------CCCeEEEEECCH
Confidence 3445566666655 67889999999999988 44433 10 245899999999
Q ss_pred HhHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCC-----CceeEEeeeehhhccc
Q psy1420 108 PRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIES-----DSYSAYTIAFGIRNVT 182 (241)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~-----~~~D~V~~~~~l~~~~ 182 (241)
.+++.+++++. ..+. ++++.++|+.. +.+. ++||+|+++...+...
T Consensus 65 ~~~~~a~~~~~-------------------------~~~~---~~~~~~~d~~~-~~~~~~~~~~~fD~i~~npp~~~~~ 115 (215)
T 4dzr_A 65 DALAVARRNAE-------------------------RFGA---VVDWAAADGIE-WLIERAERGRPWHAIVSNPPYIPTG 115 (215)
T ss_dssp ----------------------------------------------CCHHHHHH-HHHHHHHTTCCBSEEEECCCCCC--
T ss_pred HHHHHHHHHHH-------------------------HhCC---ceEEEEcchHh-hhhhhhhccCcccEEEECCCCCCCc
Confidence 99999998876 3322 46778888776 4433 7899999864332211
Q ss_pred c--------------------------HHHHHHHHHHhccCCcEEEEEecC---HHHHHHHHH--HCCCceEEEEEecCc
Q psy1420 183 R--------------------------IDKALSEAYRVLKPGGRFLCLEFS---HEEFKSMIE--SAGFQYVTYENLTFG 231 (241)
Q Consensus 183 ~--------------------------~~~~l~~~~~~LkpgG~l~i~~~~---~~~~~~~l~--~~Gf~~~~~~~~~~~ 231 (241)
+ ...+++++.++|||||++++.+.. .+.+.++++ ++||..++...-..|
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~~~gf~~~~~~~~~~~ 195 (215)
T 4dzr_A 116 EIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEVGHNQADEVARLFAPWRERGFRVRKVKDLRG 195 (215)
T ss_dssp ----------------------CTTHHHHHHHTCCGGGBCSSSEEEEEECTTSCHHHHHHHTGGGGGGTEECCEEECTTS
T ss_pred cccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEECCccHHHHHHHHHHhhcCCceEEEEEecCC
Confidence 1 167889999999999995555543 388899999 999988888777777
Q ss_pred eeEEEeeec
Q psy1420 232 VVAIHSGFK 240 (241)
Q Consensus 232 ~~~~~~~~~ 240 (241)
...++++++
T Consensus 196 ~~r~~~~~~ 204 (215)
T 4dzr_A 196 IDRVIAVTR 204 (215)
T ss_dssp CEEEEEEEE
T ss_pred CEEEEEEEE
Confidence 777777665
No 105
>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*
Probab=99.52 E-value=1.2e-13 Score=120.01 Aligned_cols=151 Identities=15% Similarity=0.147 Sum_probs=114.1
Q ss_pred HHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhH
Q psy1420 31 WKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRL 110 (241)
Q Consensus 31 ~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~ 110 (241)
+.+.+++.+. .++.+|||+|||+|..+ ..++. . .+...++++|+|+.++
T Consensus 98 l~~~~l~~~~-~~~~~vLDlG~GsG~~~-------------~~la~----~-------------~~~~~v~~vD~s~~~l 146 (276)
T 2b3t_A 98 LVEQALARLP-EQPCRILDLGTGTGAIA-------------LALAS----E-------------RPDCEIIAVDRMPDAV 146 (276)
T ss_dssp HHHHHHHHSC-SSCCEEEEETCTTSHHH-------------HHHHH----H-------------CTTSEEEEECSSHHHH
T ss_pred HHHHHHHhcc-cCCCEEEEecCCccHHH-------------HHHHH----h-------------CCCCEEEEEECCHHHH
Confidence 4455666655 56779999999999988 43332 1 0256899999999999
Q ss_pred HHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeeh-------------
Q psy1420 111 RFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFG------------- 177 (241)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~------------- 177 (241)
+.+++++. ..+++ ++++.++|+... .+.++||+|+++..
T Consensus 147 ~~a~~n~~-------------------------~~~~~--~v~~~~~d~~~~-~~~~~fD~Iv~npPy~~~~~~~l~~~v 198 (276)
T 2b3t_A 147 SLAQRNAQ-------------------------HLAIK--NIHILQSDWFSA-LAGQQFAMIVSNPPYIDEQDPHLQQGD 198 (276)
T ss_dssp HHHHHHHH-------------------------HHTCC--SEEEECCSTTGG-GTTCCEEEEEECCCCBCTTCHHHHSSG
T ss_pred HHHHHHHH-------------------------HcCCC--ceEEEEcchhhh-cccCCccEEEECCCCCCccccccChhh
Confidence 99999987 54544 688999998764 33568999998732
Q ss_pred hhcc------------ccHHHHHHHHHHhccCCcEEEEEe--cCHHHHHHHHHHCCCceEEEEEecCceeEEEeeec
Q psy1420 178 IRNV------------TRIDKALSEAYRVLKPGGRFLCLE--FSHEEFKSMIESAGFQYVTYENLTFGVVAIHSGFK 240 (241)
Q Consensus 178 l~~~------------~~~~~~l~~~~~~LkpgG~l~i~~--~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~~ 240 (241)
+++. .....+++.+.++|||||++++.. ...+++.++++++||..++...-..|...++++++
T Consensus 199 ~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~l~~~Gf~~v~~~~d~~g~~r~~~~~~ 275 (276)
T 2b3t_A 199 VRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGWQQGEAVRQAFILAGYHDVETCRDYGDNERVTLGRY 275 (276)
T ss_dssp GGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECCSSCHHHHHHHHHHTTCTTCCEEECTTSSEEEEEEEC
T ss_pred hhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECchHHHHHHHHHHHCCCcEEEEEecCCCCCcEEEEEE
Confidence 2221 245788999999999999998854 23388999999999998887776778888777765
No 106
>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A
Probab=99.52 E-value=8.4e-14 Score=117.69 Aligned_cols=139 Identities=15% Similarity=0.167 Sum_probs=103.2
Q ss_pred HhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHH
Q psy1420 36 IDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEA 115 (241)
Q Consensus 36 ~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~ 115 (241)
++.+...++.+|||+|||+|..+ ..++..+ ....++++|+++.+++.+++
T Consensus 67 l~~~~~~~~~~VLDlGcG~G~~~-------------~~la~~~-----------------~~~~v~gvD~s~~~~~~a~~ 116 (230)
T 1fbn_A 67 LKVMPIKRDSKILYLGASAGTTP-------------SHVADIA-----------------DKGIVYAIEYAPRIMRELLD 116 (230)
T ss_dssp CCCCCCCTTCEEEEESCCSSHHH-------------HHHHHHT-----------------TTSEEEEEESCHHHHHHHHH
T ss_pred ccccCCCCCCEEEEEcccCCHHH-------------HHHHHHc-----------------CCcEEEEEECCHHHHHHHHH
Confidence 44455678889999999999988 4444410 13579999999999999988
Q ss_pred HHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCC----CCCCCCceeEEeeeehhhccccH---HHHH
Q psy1420 116 NAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEE----LPIESDSYSAYTIAFGIRNVTRI---DKAL 188 (241)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~----~~~~~~~~D~V~~~~~l~~~~~~---~~~l 188 (241)
++. .. .++.++.+|+.. .+.. ++||+|+ ++++++ ..++
T Consensus 117 ~~~-------------------------~~----~~v~~~~~d~~~~~~~~~~~-~~~D~v~-----~~~~~~~~~~~~l 161 (230)
T 1fbn_A 117 ACA-------------------------ER----ENIIPILGDANKPQEYANIV-EKVDVIY-----EDVAQPNQAEILI 161 (230)
T ss_dssp HTT-------------------------TC----TTEEEEECCTTCGGGGTTTS-CCEEEEE-----ECCCSTTHHHHHH
T ss_pred Hhh-------------------------cC----CCeEEEECCCCCcccccccC-ccEEEEE-----EecCChhHHHHHH
Confidence 876 22 368888999887 5655 7899998 345555 7789
Q ss_pred HHHHHhccCCcEEEEEec------C-------HHHHHHHHHHCCCceEEEEEecC--ceeEEEeeec
Q psy1420 189 SEAYRVLKPGGRFLCLEF------S-------HEEFKSMIESAGFQYVTYENLTF--GVVAIHSGFK 240 (241)
Q Consensus 189 ~~~~~~LkpgG~l~i~~~------~-------~~~~~~~l~~~Gf~~~~~~~~~~--~~~~~~~~~~ 240 (241)
+++.++|||||++++.-. . .+++. +++++||+.++...+.. .-..+++++|
T Consensus 162 ~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~l~-~l~~~Gf~~~~~~~~~~~~~~~~~v~~~k 227 (230)
T 1fbn_A 162 KNAKWFLKKGGYGMIAIKARSIDVTKDPKEIFKEQKE-ILEAGGFKIVDEVDIEPFEKDHVMFVGIW 227 (230)
T ss_dssp HHHHHHEEEEEEEEEEEEGGGTCSSSCHHHHHHHHHH-HHHHHTEEEEEEEECTTTSTTEEEEEEEE
T ss_pred HHHHHhCCCCcEEEEEEecCCCCCCCCHHHhhHHHHH-HHHHCCCEEEEEEccCCCccceEEEEEEe
Confidence 999999999999998511 1 15666 89999999988887643 2355556655
No 107
>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}
Probab=99.52 E-value=2.4e-14 Score=119.44 Aligned_cols=140 Identities=22% Similarity=0.288 Sum_probs=99.9
Q ss_pred HhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHH
Q psy1420 36 IDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEA 115 (241)
Q Consensus 36 ~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~ 115 (241)
++.+...++.+|||+|||+|..+ ..++. . .+..+++++|+|+.|++.+.+
T Consensus 20 ~~~l~~~~~~~vLDiGcG~G~~~-------------~~la~----~-------------~p~~~v~gvD~s~~~l~~~~~ 69 (218)
T 3mq2_A 20 FEQLRSQYDDVVLDVGTGDGKHP-------------YKVAR----Q-------------NPSRLVVALDADKSRMEKISA 69 (218)
T ss_dssp HHHHHTTSSEEEEEESCTTCHHH-------------HHHHH----H-------------CTTEEEEEEESCGGGGHHHHH
T ss_pred HHHhhccCCCEEEEecCCCCHHH-------------HHHHH----H-------------CCCCEEEEEECCHHHHHHHHH
Confidence 34444678889999999999988 43333 1 025689999999999986544
Q ss_pred HHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeee---hh--hccccHHHHHHH
Q psy1420 116 NAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAF---GI--RNVTRIDKALSE 190 (241)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~---~l--~~~~~~~~~l~~ 190 (241)
.+... ....+.+ ++++.++|+..+|.+.+. |.|.... .. ++++++..++++
T Consensus 70 ~a~~~---------------------~~~~~~~--~v~~~~~d~~~l~~~~~~-d~v~~~~~~~~~~~~~~~~~~~~l~~ 125 (218)
T 3mq2_A 70 KAAAK---------------------PAKGGLP--NLLYLWATAERLPPLSGV-GELHVLMPWGSLLRGVLGSSPEMLRG 125 (218)
T ss_dssp HHTSC---------------------GGGTCCT--TEEEEECCSTTCCSCCCE-EEEEEESCCHHHHHHHHTSSSHHHHH
T ss_pred HHHHh---------------------hhhcCCC--ceEEEecchhhCCCCCCC-CEEEEEccchhhhhhhhccHHHHHHH
Confidence 43300 0022332 789999999998876655 6665332 22 267788999999
Q ss_pred HHHhccCCcEEEEEec-----------------CH----HHHHHHHHHCCCceEEEEEec
Q psy1420 191 AYRVLKPGGRFLCLEF-----------------SH----EEFKSMIESAGFQYVTYENLT 229 (241)
Q Consensus 191 ~~~~LkpgG~l~i~~~-----------------~~----~~~~~~l~~~Gf~~~~~~~~~ 229 (241)
++++|||||++++... .. +.+...++++||++.+...+.
T Consensus 126 ~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~i~~~~~~~ 185 (218)
T 3mq2_A 126 MAAVCRPGASFLVALNLHAWRPSVPEVGEHPEPTPDSADEWLAPRYAEAGWKLADCRYLE 185 (218)
T ss_dssp HHHTEEEEEEEEEEEEGGGBTTBCGGGTTCCCCCHHHHHHHHHHHHHHTTEEEEEEEEEC
T ss_pred HHHHcCCCcEEEEEeccccccccccccccCCccchHHHHHHHHHHHHHcCCCceeeeccc
Confidence 9999999999998531 11 458889999999998887653
No 108
>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53
Probab=99.52 E-value=1.6e-13 Score=114.52 Aligned_cols=128 Identities=13% Similarity=0.132 Sum_probs=99.5
Q ss_pred CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCC
Q psy1420 42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP 121 (241)
Q Consensus 42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~ 121 (241)
.++.+|||+|||+|..+ ..++. . .+...++++|+++.+++.+++++.
T Consensus 40 ~~~~~vLDiGcG~G~~~-------------~~la~----~-------------~p~~~v~gvD~s~~~l~~a~~~~~--- 86 (214)
T 1yzh_A 40 NDNPIHVEVGSGKGAFV-------------SGMAK----Q-------------NPDINYIGIDIQKSVLSYALDKVL--- 86 (214)
T ss_dssp SCCCEEEEESCTTSHHH-------------HHHHH----H-------------CTTSEEEEEESCHHHHHHHHHHHH---
T ss_pred CCCCeEEEEccCcCHHH-------------HHHHH----H-------------CCCCCEEEEEcCHHHHHHHHHHHH---
Confidence 45679999999999988 43333 1 024689999999999999999887
Q ss_pred CccccccccceecceeeeeeccccCCCCCCeeEEecccCCCC--CCCCceeEEeeeehhhccc--------cHHHHHHHH
Q psy1420 122 IESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELP--IESDSYSAYTIAFGIRNVT--------RIDKALSEA 191 (241)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~D~V~~~~~l~~~~--------~~~~~l~~~ 191 (241)
..++. ++.++++|+..++ ++.++||+|++++...+.. ....+++.+
T Consensus 87 ----------------------~~~~~--~v~~~~~d~~~~~~~~~~~~~D~i~~~~~~~~~~~~~~~~~~~~~~~l~~~ 142 (214)
T 1yzh_A 87 ----------------------EVGVP--NIKLLWVDGSDLTDYFEDGEIDRLYLNFSDPWPKKRHEKRRLTYKTFLDTF 142 (214)
T ss_dssp ----------------------HHCCS--SEEEEECCSSCGGGTSCTTCCSEEEEESCCCCCSGGGGGGSTTSHHHHHHH
T ss_pred ----------------------HcCCC--CEEEEeCCHHHHHhhcCCCCCCEEEEECCCCccccchhhhccCCHHHHHHH
Confidence 44543 7899999998876 5667899999886543222 136899999
Q ss_pred HHhccCCcEEEEEecCH---HHHHHHHHHCCCceEEEE
Q psy1420 192 YRVLKPGGRFLCLEFSH---EEFKSMIESAGFQYVTYE 226 (241)
Q Consensus 192 ~~~LkpgG~l~i~~~~~---~~~~~~l~~~Gf~~~~~~ 226 (241)
.++|+|||.+++..-.. +.+.+.++++||..+...
T Consensus 143 ~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 180 (214)
T 1yzh_A 143 KRILPENGEIHFKTDNRGLFEYSLVSFSQYGMKLNGVW 180 (214)
T ss_dssp HHHSCTTCEEEEEESCHHHHHHHHHHHHHHTCEEEEEE
T ss_pred HHHcCCCcEEEEEeCCHHHHHHHHHHHHHCCCeeeecc
Confidence 99999999999876443 667788899999887665
No 109
>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*
Probab=99.51 E-value=2e-13 Score=123.63 Aligned_cols=139 Identities=13% Similarity=0.136 Sum_probs=104.7
Q ss_pred HHHHhhcC-CCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHH
Q psy1420 33 DIFIDRLG-PTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLR 111 (241)
Q Consensus 33 ~~~~~~l~-~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~ 111 (241)
..+++.+. ..+..+|||||||+|..+ ..++. .. +..+++++|+ +.+++
T Consensus 190 ~~~~~~~~~~~~~~~vlDvG~G~G~~~-------------~~l~~-------~~----------p~~~~~~~D~-~~~~~ 238 (364)
T 3p9c_A 190 KKLLELYHGFEGLGTLVDVGGGVGATV-------------AAIAA-------HY----------PTIKGVNFDL-PHVIS 238 (364)
T ss_dssp HHHHHHCCTTTTCSEEEEETCTTSHHH-------------HHHHH-------HC----------TTCEEEEEEC-HHHHT
T ss_pred HHHHHhcccccCCCEEEEeCCCCCHHH-------------HHHHH-------HC----------CCCeEEEecC-HHHHH
Confidence 44555555 567789999999999988 44443 11 2456899999 66654
Q ss_pred HHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccH--HHHHH
Q psy1420 112 FLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRI--DKALS 189 (241)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~--~~~l~ 189 (241)
.+++ .+++++..+|+.+ |.+.. |+|++..++|++++. .++|+
T Consensus 239 ~a~~---------------------------------~~~v~~~~~D~~~-~~p~~--D~v~~~~vlh~~~d~~~~~~L~ 282 (364)
T 3p9c_A 239 EAPQ---------------------------------FPGVTHVGGDMFK-EVPSG--DTILMKWILHDWSDQHCATLLK 282 (364)
T ss_dssp TCCC---------------------------------CTTEEEEECCTTT-CCCCC--SEEEEESCGGGSCHHHHHHHHH
T ss_pred hhhh---------------------------------cCCeEEEeCCcCC-CCCCC--CEEEehHHhccCCHHHHHHHHH
Confidence 4321 1368999999887 66643 999999999998654 58999
Q ss_pred HHHHhccCCcEEEEEecCH--------------------------------HHHHHHHHHCCCceEEEEEecCceeEEEe
Q psy1420 190 EAYRVLKPGGRFLCLEFSH--------------------------------EEFKSMIESAGFQYVTYENLTFGVVAIHS 237 (241)
Q Consensus 190 ~~~~~LkpgG~l~i~~~~~--------------------------------~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~ 237 (241)
++++.|||||++++.+... ++|+++++++||+.+++.....+.. ++.
T Consensus 283 ~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~AGF~~v~~~~~~~~~~-vie 361 (364)
T 3p9c_A 283 NCYDALPAHGKVVLVQCILPVNPEANPSSQGVFHVDMIMLAHNPGGRERYEREFQALARGAGFTGVKSTYIYANAW-AIE 361 (364)
T ss_dssp HHHHHSCTTCEEEEEECCBCSSCCSSHHHHHHHHHHHHHHHHCSSCCCCBHHHHHHHHHHTTCCEEEEEEEETTEE-EEE
T ss_pred HHHHHcCCCCEEEEEEeccCCCCCcchhhhhHHHhHHHHHhcccCCccCCHHHHHHHHHHCCCceEEEEEcCCceE-EEE
Confidence 9999999999999976431 7899999999999999998865543 433
Q ss_pred ee
Q psy1420 238 GF 239 (241)
Q Consensus 238 ~~ 239 (241)
.+
T Consensus 362 ~~ 363 (364)
T 3p9c_A 362 FT 363 (364)
T ss_dssp EE
T ss_pred Ee
Confidence 33
No 110
>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*
Probab=99.51 E-value=1.1e-13 Score=118.06 Aligned_cols=133 Identities=14% Similarity=0.189 Sum_probs=107.0
Q ss_pred HHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHH
Q psy1420 33 DIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRF 112 (241)
Q Consensus 33 ~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~ 112 (241)
..+...+...++.+|||+|||+|..+ ..++..++ +..+++++|+++.+++.
T Consensus 83 ~~i~~~~~~~~~~~vldiG~G~G~~~-------------~~l~~~~~----------------~~~~v~~~D~~~~~~~~ 133 (255)
T 3mb5_A 83 ALIVAYAGISPGDFIVEAGVGSGALT-------------LFLANIVG----------------PEGRVVSYEIREDFAKL 133 (255)
T ss_dssp HHHHHHTTCCTTCEEEEECCTTSHHH-------------HHHHHHHC----------------TTSEEEEECSCHHHHHH
T ss_pred HHHHHhhCCCCCCEEEEecCCchHHH-------------HHHHHHhC----------------CCeEEEEEecCHHHHHH
Confidence 45667777888999999999999988 44444111 35689999999999999
Q ss_pred HHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHHHHH
Q psy1420 113 LEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAY 192 (241)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~~~ 192 (241)
+++++. ..+++ .++++...|+.+. .+.++||+|++ +.+++..+++++.
T Consensus 134 a~~~~~-------------------------~~~~~-~~v~~~~~d~~~~-~~~~~~D~v~~-----~~~~~~~~l~~~~ 181 (255)
T 3mb5_A 134 AWENIK-------------------------WAGFD-DRVTIKLKDIYEG-IEEENVDHVIL-----DLPQPERVVEHAA 181 (255)
T ss_dssp HHHHHH-------------------------HHTCT-TTEEEECSCGGGC-CCCCSEEEEEE-----CSSCGGGGHHHHH
T ss_pred HHHHHH-------------------------HcCCC-CceEEEECchhhc-cCCCCcCEEEE-----CCCCHHHHHHHHH
Confidence 999987 55554 4589999998864 55678999997 4567788999999
Q ss_pred HhccCCcEEEEEecCH---HHHHHHHHHCC--CceEEEE
Q psy1420 193 RVLKPGGRFLCLEFSH---EEFKSMIESAG--FQYVTYE 226 (241)
Q Consensus 193 ~~LkpgG~l~i~~~~~---~~~~~~l~~~G--f~~~~~~ 226 (241)
++|+|||++++..... .++.+.+++.| |..++..
T Consensus 182 ~~L~~gG~l~~~~~~~~~~~~~~~~l~~~g~~f~~~~~~ 220 (255)
T 3mb5_A 182 KALKPGGFFVAYTPCSNQVMRLHEKLREFKDYFMKPRTI 220 (255)
T ss_dssp HHEEEEEEEEEEESSHHHHHHHHHHHHHTGGGBSCCEEE
T ss_pred HHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCccccEEE
Confidence 9999999999987665 67788999999 8776654
No 111
>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13
Probab=99.50 E-value=8.6e-14 Score=120.90 Aligned_cols=132 Identities=14% Similarity=0.178 Sum_probs=102.7
Q ss_pred HHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHH
Q psy1420 34 IFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFL 113 (241)
Q Consensus 34 ~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~ 113 (241)
.+.+.+...++.+|||+|||+|..+ ..++..++ +..+++++|+++.+++.+
T Consensus 101 ~~~~~~~~~~~~~VLD~G~G~G~~~-------------~~la~~~~----------------~~~~v~~vD~s~~~~~~a 151 (275)
T 1yb2_A 101 YIIMRCGLRPGMDILEVGVGSGNMS-------------SYILYALN----------------GKGTLTVVERDEDNLKKA 151 (275)
T ss_dssp -----CCCCTTCEEEEECCTTSHHH-------------HHHHHHHT----------------TSSEEEEECSCHHHHHHH
T ss_pred HHHHHcCCCCcCEEEEecCCCCHHH-------------HHHHHHcC----------------CCCEEEEEECCHHHHHHH
Confidence 5556667788899999999999988 44433110 256899999999999999
Q ss_pred HHHHhcCCCccccccccceecceeeeeecccc-CCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHHHHH
Q psy1420 114 EANAEELPIESDSYSAYTIAFGIRNVTRIDKI-DIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAY 192 (241)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~~~ 192 (241)
++++. .. +. +++++..+|+.. +.++++||+|++ +.+++..+++++.
T Consensus 152 ~~~~~-------------------------~~~g~--~~v~~~~~d~~~-~~~~~~fD~Vi~-----~~~~~~~~l~~~~ 198 (275)
T 1yb2_A 152 MDNLS-------------------------EFYDI--GNVRTSRSDIAD-FISDQMYDAVIA-----DIPDPWNHVQKIA 198 (275)
T ss_dssp HHHHH-------------------------TTSCC--TTEEEECSCTTT-CCCSCCEEEEEE-----CCSCGGGSHHHHH
T ss_pred HHHHH-------------------------hcCCC--CcEEEEECchhc-cCcCCCccEEEE-----cCcCHHHHHHHHH
Confidence 99887 44 42 368899999887 555678999997 5678889999999
Q ss_pred HhccCCcEEEEEecCH---HHHHHHHHHCCCceEEEEE
Q psy1420 193 RVLKPGGRFLCLEFSH---EEFKSMIESAGFQYVTYEN 227 (241)
Q Consensus 193 ~~LkpgG~l~i~~~~~---~~~~~~l~~~Gf~~~~~~~ 227 (241)
++|||||++++.+... +++.+.++++||..++...
T Consensus 199 ~~LkpgG~l~i~~~~~~~~~~~~~~l~~~Gf~~~~~~~ 236 (275)
T 1yb2_A 199 SMMKPGSVATFYLPNFDQSEKTVLSLSASGMHHLETVE 236 (275)
T ss_dssp HTEEEEEEEEEEESSHHHHHHHHHHSGGGTEEEEEEEE
T ss_pred HHcCCCCEEEEEeCCHHHHHHHHHHHHHCCCeEEEEEE
Confidence 9999999999988776 5667778889998877765
No 112
>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}
Probab=99.50 E-value=1.6e-13 Score=116.76 Aligned_cols=134 Identities=17% Similarity=0.228 Sum_probs=106.5
Q ss_pred HHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHH
Q psy1420 33 DIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRF 112 (241)
Q Consensus 33 ~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~ 112 (241)
..++..+...++.+|||+|||+|..+ ..++..++ +...++++|+++.+++.
T Consensus 86 ~~~~~~~~~~~~~~vLdiG~G~G~~~-------------~~l~~~~~----------------~~~~v~~~D~~~~~~~~ 136 (258)
T 2pwy_A 86 SAMVTLLDLAPGMRVLEAGTGSGGLT-------------LFLARAVG----------------EKGLVESYEARPHHLAQ 136 (258)
T ss_dssp HHHHHHTTCCTTCEEEEECCTTSHHH-------------HHHHHHHC----------------TTSEEEEEESCHHHHHH
T ss_pred HHHHHHcCCCCCCEEEEECCCcCHHH-------------HHHHHHhC----------------CCCEEEEEeCCHHHHHH
Confidence 45666777788999999999999988 44444111 25689999999999999
Q ss_pred HHHHHhcCCCccccccccceecceeeeeecccc-CCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHHHH
Q psy1420 113 LEANAEELPIESDSYSAYTIAFGIRNVTRIDKI-DIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEA 191 (241)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~~ 191 (241)
+++++. .. +. +++++...|+.+.++++++||+|++ +.+++..+++++
T Consensus 137 a~~~~~-------------------------~~~g~--~~v~~~~~d~~~~~~~~~~~D~v~~-----~~~~~~~~l~~~ 184 (258)
T 2pwy_A 137 AERNVR-------------------------AFWQV--ENVRFHLGKLEEAELEEAAYDGVAL-----DLMEPWKVLEKA 184 (258)
T ss_dssp HHHHHH-------------------------HHCCC--CCEEEEESCGGGCCCCTTCEEEEEE-----ESSCGGGGHHHH
T ss_pred HHHHHH-------------------------HhcCC--CCEEEEECchhhcCCCCCCcCEEEE-----CCcCHHHHHHHH
Confidence 999876 43 32 4789999999887777778999997 456778999999
Q ss_pred HHhccCCcEEEEEecCH---HHHHHHHHHCCCceEEEEE
Q psy1420 192 YRVLKPGGRFLCLEFSH---EEFKSMIESAGFQYVTYEN 227 (241)
Q Consensus 192 ~~~LkpgG~l~i~~~~~---~~~~~~l~~~Gf~~~~~~~ 227 (241)
.++|+|||++++..... .++.+.+++.||..++...
T Consensus 185 ~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~gf~~~~~~~ 223 (258)
T 2pwy_A 185 ALALKPDRFLVAYLPNITQVLELVRAAEAHPFRLERVLE 223 (258)
T ss_dssp HHHEEEEEEEEEEESCHHHHHHHHHHHTTTTEEEEEEEE
T ss_pred HHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCceEEEEE
Confidence 99999999999988776 4566777889998766554
No 113
>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20
Probab=99.50 E-value=9.3e-14 Score=114.63 Aligned_cols=134 Identities=16% Similarity=0.216 Sum_probs=99.5
Q ss_pred CCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCC
Q psy1420 43 HDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPI 122 (241)
Q Consensus 43 ~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~ 122 (241)
++.+|||+|||+|..+ ..++. .. +..+++++|+++.+++.+++++.
T Consensus 65 ~~~~vLDiG~G~G~~~-------------~~l~~----~~-------------~~~~v~~vD~s~~~~~~a~~~~~---- 110 (207)
T 1jsx_A 65 QGERFIDVGTGPGLPG-------------IPLSI----VR-------------PEAHFTLLDSLGKRVRFLRQVQH---- 110 (207)
T ss_dssp CSSEEEEETCTTTTTH-------------HHHHH----HC-------------TTSEEEEEESCHHHHHHHHHHHH----
T ss_pred CCCeEEEECCCCCHHH-------------HHHHH----HC-------------CCCEEEEEeCCHHHHHHHHHHHH----
Confidence 4779999999999998 43333 10 25689999999999999999887
Q ss_pred ccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHHHHHHhccCCcEEE
Q psy1420 123 ESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFL 202 (241)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~ 202 (241)
..++. ++++.++|+...+ +.++||+|++.. +.++..+++.+.++|+|||+++
T Consensus 111 ---------------------~~~~~--~v~~~~~d~~~~~-~~~~~D~i~~~~----~~~~~~~l~~~~~~L~~gG~l~ 162 (207)
T 1jsx_A 111 ---------------------ELKLE--NIEPVQSRVEEFP-SEPPFDGVISRA----FASLNDMVSWCHHLPGEQGRFY 162 (207)
T ss_dssp ---------------------HTTCS--SEEEEECCTTTSC-CCSCEEEEECSC----SSSHHHHHHHHTTSEEEEEEEE
T ss_pred ---------------------HcCCC--CeEEEecchhhCC-ccCCcCEEEEec----cCCHHHHHHHHHHhcCCCcEEE
Confidence 44544 4889999998875 356899999743 4678899999999999999998
Q ss_pred EEec--CHHHHHHHHHHCCCceEEEEEec----CceeEEEeeec
Q psy1420 203 CLEF--SHEEFKSMIESAGFQYVTYENLT----FGVVAIHSGFK 240 (241)
Q Consensus 203 i~~~--~~~~~~~~l~~~Gf~~~~~~~~~----~~~~~~~~~~~ 240 (241)
+..- ..+++.++++ ||..++..... .|...++..+|
T Consensus 163 ~~~~~~~~~~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~k 204 (207)
T 1jsx_A 163 ALKGQMPEDEIALLPE--EYQVESVVKLQVPALDGERHLVVIKA 204 (207)
T ss_dssp EEESSCCHHHHHTSCT--TEEEEEEEEEECC--CCEEEEEEEEE
T ss_pred EEeCCCchHHHHHHhc--CCceeeeeeeccCCCCCceEEEEEEe
Confidence 8753 3366666665 99887755332 34445444443
No 114
>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*
Probab=99.50 E-value=1.3e-13 Score=124.82 Aligned_cols=141 Identities=14% Similarity=0.195 Sum_probs=106.8
Q ss_pred HHHHhhcC-CCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHH
Q psy1420 33 DIFIDRLG-PTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLR 111 (241)
Q Consensus 33 ~~~~~~l~-~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~ 111 (241)
..+++.+. ..++.+|||+|||+|..+ ..++. . .+...++++|+ +.+++
T Consensus 198 ~~l~~~~~~~~~~~~vLDvG~G~G~~~-------------~~l~~----~-------------~~~~~~~~~D~-~~~~~ 246 (372)
T 1fp1_D 198 KRMLEIYTGFEGISTLVDVGGGSGRNL-------------ELIIS----K-------------YPLIKGINFDL-PQVIE 246 (372)
T ss_dssp HHHHHHCCTTTTCSEEEEETCTTSHHH-------------HHHHH----H-------------CTTCEEEEEEC-HHHHT
T ss_pred HHHHHHhhccCCCCEEEEeCCCCcHHH-------------HHHHH----H-------------CCCCeEEEeCh-HHHHH
Confidence 44555554 566789999999999988 44433 0 02456788899 77775
Q ss_pred HHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHH--HHHH
Q psy1420 112 FLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRID--KALS 189 (241)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~--~~l~ 189 (241)
.+++ . +++++..+|+.. +.+. +|+|++..++|+++++. .+|+
T Consensus 247 ~a~~-------------------------------~--~~v~~~~~d~~~-~~~~--~D~v~~~~~lh~~~d~~~~~~l~ 290 (372)
T 1fp1_D 247 NAPP-------------------------------L--SGIEHVGGDMFA-SVPQ--GDAMILKAVCHNWSDEKCIEFLS 290 (372)
T ss_dssp TCCC-------------------------------C--TTEEEEECCTTT-CCCC--EEEEEEESSGGGSCHHHHHHHHH
T ss_pred hhhh-------------------------------c--CCCEEEeCCccc-CCCC--CCEEEEecccccCCHHHHHHHHH
Confidence 4431 1 258899999887 5543 99999999999999887 9999
Q ss_pred HHHHhccCCcEEEEEecC-------------------------------HHHHHHHHHHCCCceEEEEEecCceeEEEee
Q psy1420 190 EAYRVLKPGGRFLCLEFS-------------------------------HEEFKSMIESAGFQYVTYENLTFGVVAIHSG 238 (241)
Q Consensus 190 ~~~~~LkpgG~l~i~~~~-------------------------------~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~ 238 (241)
+++++|||||++++.+.. .+++.++++++||+.+++.....|...++.+
T Consensus 291 ~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~vie~ 370 (372)
T 1fp1_D 291 NCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFITVGGRERTEKQYEKLSKLSGFSKFQVACRAFNSLGVMEF 370 (372)
T ss_dssp HHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHHHHSCCCEEHHHHHHHHHHTTCSEEEEEEEETTTEEEEEE
T ss_pred HHHHhcCCCCEEEEEEeccCCCCccchHHHHHHHhhHHHHhccCCccCCHHHHHHHHHHCCCceEEEEEcCCCCeEEEEE
Confidence 999999999999987421 1788999999999999998866662266666
Q ss_pred ec
Q psy1420 239 FK 240 (241)
Q Consensus 239 ~~ 240 (241)
+|
T Consensus 371 ~~ 372 (372)
T 1fp1_D 371 YK 372 (372)
T ss_dssp EC
T ss_pred eC
Confidence 53
No 115
>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*
Probab=99.49 E-value=4.1e-13 Score=118.89 Aligned_cols=141 Identities=11% Similarity=0.073 Sum_probs=102.4
Q ss_pred hhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHH
Q psy1420 37 DRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEAN 116 (241)
Q Consensus 37 ~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~ 116 (241)
..+..+++.+|||+|||+|..+ ..++. .. ...+++++|+++.+++.|+++
T Consensus 116 ~la~l~~g~rVLDIGcG~G~~t-------------a~~lA-------~~----------~ga~V~gIDis~~~l~~Ar~~ 165 (298)
T 3fpf_A 116 ALGRFRRGERAVFIGGGPLPLT-------------GILLS-------HV----------YGMRVNVVEIEPDIAELSRKV 165 (298)
T ss_dssp HHTTCCTTCEEEEECCCSSCHH-------------HHHHH-------HT----------TCCEEEEEESSHHHHHHHHHH
T ss_pred HHcCCCCcCEEEEECCCccHHH-------------HHHHH-------Hc----------cCCEEEEEECCHHHHHHHHHH
Confidence 4567789999999999999876 11111 11 357899999999999999999
Q ss_pred HhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHHHHHHhcc
Q psy1420 117 AEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLK 196 (241)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~Lk 196 (241)
+. +.++ .++++.++|+.+++ .++||+|++... .+++.++++++.++||
T Consensus 166 ~~-------------------------~~gl--~~v~~v~gDa~~l~--d~~FDvV~~~a~---~~d~~~~l~el~r~Lk 213 (298)
T 3fpf_A 166 IE-------------------------GLGV--DGVNVITGDETVID--GLEFDVLMVAAL---AEPKRRVFRNIHRYVD 213 (298)
T ss_dssp HH-------------------------HHTC--CSEEEEESCGGGGG--GCCCSEEEECTT---CSCHHHHHHHHHHHCC
T ss_pred HH-------------------------hcCC--CCeEEEECchhhCC--CCCcCEEEECCC---ccCHHHHHHHHHHHcC
Confidence 88 6666 37999999998876 578999997654 5788999999999999
Q ss_pred CCcEEEEEecCHH------HHHHHHHHCCCceEEEEEecCceeE-EEeeec
Q psy1420 197 PGGRFLCLEFSHE------EFKSMIESAGFQYVTYENLTFGVVA-IHSGFK 240 (241)
Q Consensus 197 pgG~l~i~~~~~~------~~~~~l~~~Gf~~~~~~~~~~~~~~-~~~~~~ 240 (241)
|||++++.+.... .... ....||+......-...+.+ +..++|
T Consensus 214 PGG~Lvv~~~~~~r~~l~~~v~~-~~~~gf~~~~~~~p~~~v~N~vv~a~k 263 (298)
T 3fpf_A 214 TETRIIYRTYTGMRAILYAPVSD-DDITGFRRAGVVLPSGKVNNTSVLVFK 263 (298)
T ss_dssp TTCEEEEEECCGGGGGSSCCCCT-GGGTTEEEEEEECCCTTCCCEEEEEEE
T ss_pred CCcEEEEEcCcchhhhccccCCh-hhhhhhhheeEECCCCCcCcEEEEEEc
Confidence 9999999775440 0000 13348876655544443333 445554
No 116
>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}
Probab=99.49 E-value=1e-13 Score=113.71 Aligned_cols=134 Identities=13% Similarity=0.165 Sum_probs=98.8
Q ss_pred CCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcC
Q psy1420 41 PTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEEL 120 (241)
Q Consensus 41 ~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~ 120 (241)
.+++.+|||+|||+|..+ ..++..++ ....++++|+++.+++.+++++.
T Consensus 20 ~~~~~~vLDlGcG~G~~~-------------~~l~~~~~----------------~~~~v~~vD~s~~~~~~a~~~~~-- 68 (197)
T 3eey_A 20 VKEGDTVVDATCGNGNDT-------------AFLASLVG----------------ENGRVFGFDIQDKAIANTTKKLT-- 68 (197)
T ss_dssp CCTTCEEEESCCTTSHHH-------------HHHHHHHC----------------TTCEEEEECSCHHHHHHHHHHHH--
T ss_pred CCCCCEEEEcCCCCCHHH-------------HHHHHHhC----------------CCCEEEEEECCHHHHHHHHHHHH--
Confidence 457789999999999988 44443110 23589999999999999999987
Q ss_pred CCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCC-CCCCceeEEeeeehhh---------ccccHHHHHHH
Q psy1420 121 PIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELP-IESDSYSAYTIAFGIR---------NVTRIDKALSE 190 (241)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~D~V~~~~~l~---------~~~~~~~~l~~ 190 (241)
..++. ++++++++|+...+ ...++||+|++...+. ...+...++++
T Consensus 69 -----------------------~~~~~-~~v~~~~~d~~~~~~~~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~ 124 (197)
T 3eey_A 69 -----------------------DLNLI-DRVTLIKDGHQNMDKYIDCPVKAVMFNLGYLPSGDHSISTRPETTIQALSK 124 (197)
T ss_dssp -----------------------HTTCG-GGEEEECSCGGGGGGTCCSCEEEEEEEESBCTTSCTTCBCCHHHHHHHHHH
T ss_pred -----------------------HcCCC-CCeEEEECCHHHHhhhccCCceEEEEcCCcccCcccccccCcccHHHHHHH
Confidence 54543 47899999988775 4557899999887551 12245689999
Q ss_pred HHHhccCCcEEEEEecCH--------HHHHHHHH---HCCCceEEEEEec
Q psy1420 191 AYRVLKPGGRFLCLEFSH--------EEFKSMIE---SAGFQYVTYENLT 229 (241)
Q Consensus 191 ~~~~LkpgG~l~i~~~~~--------~~~~~~l~---~~Gf~~~~~~~~~ 229 (241)
+.++|||||++++..+.. ..+.++++ ..+|.+..+..++
T Consensus 125 ~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~v~~~~~~~ 174 (197)
T 3eey_A 125 AMELLVTGGIITVVIYYGGDTGFEEKEKVLEFLKGVDQKKFIVQRTDFIN 174 (197)
T ss_dssp HHHHEEEEEEEEEEECCBTTTBSHHHHHHHHHHTTSCTTTEEEEEEEETT
T ss_pred HHHhCcCCCEEEEEEccCCCCcHHHHHHHHHHHHhCCCCcEEEEEEEecc
Confidence 999999999999987542 44455554 4567777766554
No 117
>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}
Probab=99.49 E-value=2.4e-13 Score=116.99 Aligned_cols=137 Identities=9% Similarity=0.123 Sum_probs=103.8
Q ss_pred HHhhcCCC-CCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHH
Q psy1420 35 FIDRLGPT-HDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFL 113 (241)
Q Consensus 35 ~~~~l~~~-~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~ 113 (241)
+...+..+ ++.+|||+|||+|..+ ..++. . ....++++|+++.+++.+
T Consensus 40 l~~~~~~~~~~~~vLDlG~G~G~~~-------------~~la~--------~----------~~~~v~gvDi~~~~~~~a 88 (259)
T 3lpm_A 40 LAKFSYLPIRKGKIIDLCSGNGIIP-------------LLLST--------R----------TKAKIVGVEIQERLADMA 88 (259)
T ss_dssp HHHHCCCCSSCCEEEETTCTTTHHH-------------HHHHT--------T----------CCCEEEEECCSHHHHHHH
T ss_pred HHHHhcCCCCCCEEEEcCCchhHHH-------------HHHHH--------h----------cCCcEEEEECCHHHHHHH
Confidence 33444556 7889999999999988 33332 1 123899999999999999
Q ss_pred HHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCC--CCCCceeEEeeeehhhcc----------
Q psy1420 114 EANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELP--IESDSYSAYTIAFGIRNV---------- 181 (241)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~D~V~~~~~l~~~---------- 181 (241)
++++. ..++. ++++++++|+.+.+ ++.++||+|+++-.....
T Consensus 89 ~~n~~-------------------------~~~~~-~~v~~~~~D~~~~~~~~~~~~fD~Ii~npPy~~~~~~~~~~~~~ 142 (259)
T 3lpm_A 89 KRSVA-------------------------YNQLE-DQIEIIEYDLKKITDLIPKERADIVTCNPPYFATPDTSLKNTNE 142 (259)
T ss_dssp HHHHH-------------------------HTTCT-TTEEEECSCGGGGGGTSCTTCEEEEEECCCC-------------
T ss_pred HHHHH-------------------------HCCCc-ccEEEEECcHHHhhhhhccCCccEEEECCCCCCCccccCCCCch
Confidence 99988 55555 57999999998875 446799999996333211
Q ss_pred ----------ccHHHHHHHHHHhccCCcEEEEEecCH--HHHHHHHHHCCCceEEEEEe
Q psy1420 182 ----------TRIDKALSEAYRVLKPGGRFLCLEFSH--EEFKSMIESAGFQYVTYENL 228 (241)
Q Consensus 182 ----------~~~~~~l~~~~~~LkpgG~l~i~~~~~--~~~~~~l~~~Gf~~~~~~~~ 228 (241)
.+...+++.+.++|||||+++++.... .++...+++.||....+..+
T Consensus 143 ~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~v 201 (259)
T 3lpm_A 143 HFRIARHEVMCTLEDTIRVAASLLKQGGKANFVHRPERLLDIIDIMRKYRLEPKRIQFV 201 (259)
T ss_dssp ----------HHHHHHHHHHHHHEEEEEEEEEEECTTTHHHHHHHHHHTTEEEEEEEEE
T ss_pred HHHhhhccccCCHHHHHHHHHHHccCCcEEEEEEcHHHHHHHHHHHHHCCCceEEEEEe
Confidence 234689999999999999999865332 78889999999998877765
No 118
>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}
Probab=99.49 E-value=1.1e-13 Score=120.67 Aligned_cols=138 Identities=11% Similarity=-0.013 Sum_probs=95.8
Q ss_pred hHHHHHhhhhhccccchhhhhhhhHHHHHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhh
Q psy1420 4 PMYEVFENVAKSYDTMNDAMSFGIHRLWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIA 83 (241)
Q Consensus 4 ~~~~~f~~~~~~yd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (241)
...+.|+.+++.|..++.... ...+.+.+++.+...++.+|||+|||+|..+ ..++.
T Consensus 9 s~a~~wd~~a~~f~~~~~~~~---~~~~~~~il~~l~l~~g~~VLDlGcGtG~~a-------------~~La~------- 65 (261)
T 3iv6_A 9 SKAEAWELIGNQFWTIGRVAA---RPSDRENDIFLENIVPGSTVAVIGASTRFLI-------------EKALE------- 65 (261)
T ss_dssp TTHHHHHTTTTHHHHTSCGGG---SCCHHHHHHHTTTCCTTCEEEEECTTCHHHH-------------HHHHH-------
T ss_pred hhhhHHHHHHHHHHHHhhccc---cHHHHHHHHHhcCCCCcCEEEEEeCcchHHH-------------HHHHh-------
Confidence 345667777766655422110 0345667778888888999999999999988 44444
Q ss_pred cCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCC
Q psy1420 84 GQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELP 163 (241)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 163 (241)
....++++|+|+.|++.+++++. ... -..++...+.....
T Consensus 66 ------------~g~~V~gvD~S~~ml~~Ar~~~~-------------------------~~~---v~~~~~~~~~~~~~ 105 (261)
T 3iv6_A 66 ------------RGASVTVFDFSQRMCDDLAEALA-------------------------DRC---VTIDLLDITAEIPK 105 (261)
T ss_dssp ------------TTCEEEEEESCHHHHHHHHHHTS-------------------------SSC---CEEEECCTTSCCCG
T ss_pred ------------cCCEEEEEECCHHHHHHHHHHHH-------------------------hcc---ceeeeeeccccccc
Confidence 35689999999999999998876 111 01222222221011
Q ss_pred CCCCceeEEeeeehhhccc--cHHHHHHHHHHhccCCcEEEEEe
Q psy1420 164 IESDSYSAYTIAFGIRNVT--RIDKALSEAYRVLKPGGRFLCLE 205 (241)
Q Consensus 164 ~~~~~~D~V~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~i~~ 205 (241)
...++||+|+++.+++++. +...++.++.++| |||+++++.
T Consensus 106 ~~~~~fD~Vv~~~~l~~~~~~~~~~~l~~l~~lL-PGG~l~lS~ 148 (261)
T 3iv6_A 106 ELAGHFDFVLNDRLINRFTTEEARRACLGMLSLV-GSGTVRASV 148 (261)
T ss_dssp GGTTCCSEEEEESCGGGSCHHHHHHHHHHHHHHH-TTSEEEEEE
T ss_pred ccCCCccEEEEhhhhHhCCHHHHHHHHHHHHHhC-cCcEEEEEe
Confidence 1246899999999999864 4568999999999 999999864
No 119
>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53
Probab=99.49 E-value=2.5e-13 Score=113.86 Aligned_cols=128 Identities=11% Similarity=0.085 Sum_probs=97.0
Q ss_pred CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCC
Q psy1420 42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP 121 (241)
Q Consensus 42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~ 121 (241)
.++.+|||+|||+|..+ ..++. . . +...++|+|+++.+++.+.+++.
T Consensus 37 ~~~~~vLDiGcG~G~~~-------------~~la~----~---~----------p~~~v~giD~s~~~l~~a~~~~~--- 83 (213)
T 2fca_A 37 NDNPIHIEVGTGKGQFI-------------SGMAK----Q---N----------PDINYIGIELFKSVIVTAVQKVK--- 83 (213)
T ss_dssp SCCCEEEEECCTTSHHH-------------HHHHH----H---C----------TTSEEEEECSCHHHHHHHHHHHH---
T ss_pred CCCceEEEEecCCCHHH-------------HHHHH----H---C----------CCCCEEEEEechHHHHHHHHHHH---
Confidence 35678999999999988 43333 1 0 35689999999999999999887
Q ss_pred CccccccccceecceeeeeeccccCCCCCCeeEEecccCCCC--CCCCceeEEeeeehhhcccc--------HHHHHHHH
Q psy1420 122 IESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELP--IESDSYSAYTIAFGIRNVTR--------IDKALSEA 191 (241)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~D~V~~~~~l~~~~~--------~~~~l~~~ 191 (241)
..++. +++++++|+..++ ++.+++|.|++.+.-.+... ...+++++
T Consensus 84 ----------------------~~~~~--nv~~~~~d~~~l~~~~~~~~~d~v~~~~~~p~~~~~~~~~rl~~~~~l~~~ 139 (213)
T 2fca_A 84 ----------------------DSEAQ--NVKLLNIDADTLTDVFEPGEVKRVYLNFSDPWPKKRHEKRRLTYSHFLKKY 139 (213)
T ss_dssp ----------------------HSCCS--SEEEECCCGGGHHHHCCTTSCCEEEEESCCCCCSGGGGGGSTTSHHHHHHH
T ss_pred ----------------------HcCCC--CEEEEeCCHHHHHhhcCcCCcCEEEEECCCCCcCccccccccCcHHHHHHH
Confidence 55544 6899999988765 55678999987654322211 36889999
Q ss_pred HHhccCCcEEEEEecCH---HHHHHHHHHCCCceEEEE
Q psy1420 192 YRVLKPGGRFLCLEFSH---EEFKSMIESAGFQYVTYE 226 (241)
Q Consensus 192 ~~~LkpgG~l~i~~~~~---~~~~~~l~~~Gf~~~~~~ 226 (241)
.++|||||.+++.+-.. +.+.+.+++.||......
T Consensus 140 ~~~LkpgG~l~~~td~~~~~~~~~~~~~~~g~~~~~~~ 177 (213)
T 2fca_A 140 EEVMGKGGSIHFKTDNRGLFEYSLKSFSEYGLLLTYVS 177 (213)
T ss_dssp HHHHTTSCEEEEEESCHHHHHHHHHHHHHHTCEEEEEE
T ss_pred HHHcCCCCEEEEEeCCHHHHHHHHHHHHHCCCcccccc
Confidence 99999999999876554 566778888999876543
No 120
>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*
Probab=99.48 E-value=2e-13 Score=122.57 Aligned_cols=132 Identities=19% Similarity=0.223 Sum_probs=101.8
Q ss_pred CCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcC
Q psy1420 41 PTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEEL 120 (241)
Q Consensus 41 ~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~ 120 (241)
..++.+|||+|||+|..+ ..++. . . +..+++++|+ +.+++.+++
T Consensus 186 ~~~~~~vlDvG~G~G~~~-------------~~l~~----~---~----------p~~~~~~~D~-~~~~~~a~~----- 229 (352)
T 1fp2_A 186 FDGLESIVDVGGGTGTTA-------------KIICE----T---F----------PKLKCIVFDR-PQVVENLSG----- 229 (352)
T ss_dssp HTTCSEEEEETCTTSHHH-------------HHHHH----H---C----------TTCEEEEEEC-HHHHTTCCC-----
T ss_pred cccCceEEEeCCCccHHH-------------HHHHH----H---C----------CCCeEEEeeC-HHHHhhccc-----
Confidence 356679999999999988 44433 0 0 2457999999 887765432
Q ss_pred CCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHH--HHHHHHHHhccC-
Q psy1420 121 PIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRID--KALSEAYRVLKP- 197 (241)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~--~~l~~~~~~Lkp- 197 (241)
. +++++..+|+.+ +.+ .||+|++..++|++++.. ++|++++++|||
T Consensus 230 --------------------------~--~~v~~~~~d~~~-~~p--~~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~p~ 278 (352)
T 1fp2_A 230 --------------------------S--NNLTYVGGDMFT-SIP--NADAVLLKYILHNWTDKDCLRILKKCKEAVTND 278 (352)
T ss_dssp --------------------------B--TTEEEEECCTTT-CCC--CCSEEEEESCGGGSCHHHHHHHHHHHHHHHSGG
T ss_pred --------------------------C--CCcEEEeccccC-CCC--CccEEEeehhhccCCHHHHHHHHHHHHHhCCCC
Confidence 0 248899999876 444 399999999999999887 999999999999
Q ss_pred --CcEEEEEecC------------------------------HHHHHHHHHHCCCceEEEEEecCceeEEEeeec
Q psy1420 198 --GGRFLCLEFS------------------------------HEEFKSMIESAGFQYVTYENLTFGVVAIHSGFK 240 (241)
Q Consensus 198 --gG~l~i~~~~------------------------------~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~~ 240 (241)
||++++.+.. .++|.++++++||+.+++... .|...++.+++
T Consensus 279 ~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~-~~~~~vie~~~ 352 (352)
T 1fp2_A 279 GKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMACLNGKERNEEEWKKLFIEAGFQHYKISPL-TGFLSLIEIYP 352 (352)
T ss_dssp GCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGGGGTCCCEEHHHHHHHHHHTTCCEEEEEEE-ETTEEEEEEEC
T ss_pred CCCcEEEEEEeecCCCCCccchhhhHhhccHHHHhccCCCCCHHHHHHHHHHCCCCeeEEEec-CCCcEEEEEeC
Confidence 9999987531 168899999999999988874 45566666653
No 121
>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*
Probab=99.47 E-value=2.9e-13 Score=119.35 Aligned_cols=125 Identities=18% Similarity=0.175 Sum_probs=93.1
Q ss_pred CCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCC
Q psy1420 43 HDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPI 122 (241)
Q Consensus 43 ~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~ 122 (241)
++.+|||+|||+|..+ ..++. .....++++|+++.+++.++++......
T Consensus 34 ~~~~VLDlGcG~G~~~-------------~~l~~------------------~~~~~v~gvD~s~~~l~~a~~~~~~~~~ 82 (313)
T 3bgv_A 34 RDITVLDLGCGKGGDL-------------LKWKK------------------GRINKLVCTDIADVSVKQCQQRYEDMKN 82 (313)
T ss_dssp -CCEEEEETCTTTTTH-------------HHHHH------------------TTCSEEEEEESCHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCcHHH-------------HHHHh------------------cCCCEEEEEeCCHHHHHHHHHHHHHhhh
Confidence 6779999999999988 33332 1345899999999999999988751000
Q ss_pred ccccccccceecceeeeeeccccCCCCCCeeEEecccCCCC----CC--CCceeEEeeeehhhcc----ccHHHHHHHHH
Q psy1420 123 ESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELP----IE--SDSYSAYTIAFGIRNV----TRIDKALSEAY 192 (241)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~----~~--~~~~D~V~~~~~l~~~----~~~~~~l~~~~ 192 (241)
...... ..++.++++|+...+ ++ .++||+|++++++|+. +++..+++++.
T Consensus 83 ------------------~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~ 142 (313)
T 3bgv_A 83 ------------------RRDSEY--IFSAEFITADSSKELLIDKFRDPQMCFDICSCQFVCHYSFESYEQADMMLRNAC 142 (313)
T ss_dssp ------------------SSCC-C--CCEEEEEECCTTTSCSTTTCSSTTCCEEEEEEETCGGGGGGSHHHHHHHHHHHH
T ss_pred ------------------cccccc--cceEEEEEecccccchhhhcccCCCCEEEEEEecchhhccCCHHHHHHHHHHHH
Confidence 000001 136889999998875 43 3589999999999887 34579999999
Q ss_pred HhccCCcEEEEEecCHHHHHHHHHHC
Q psy1420 193 RVLKPGGRFLCLEFSHEEFKSMIESA 218 (241)
Q Consensus 193 ~~LkpgG~l~i~~~~~~~~~~~l~~~ 218 (241)
++|||||++++..+...++.+.+..+
T Consensus 143 ~~LkpgG~li~~~~~~~~l~~~~~~~ 168 (313)
T 3bgv_A 143 ERLSPGGYFIGTTPNSFELIRRLEAS 168 (313)
T ss_dssp TTEEEEEEEEEEEECHHHHHHHHTTS
T ss_pred HHhCCCcEEEEecCChHHHHHHHHhh
Confidence 99999999999999887776666544
No 122
>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A
Probab=99.46 E-value=4.6e-13 Score=108.15 Aligned_cols=92 Identities=17% Similarity=0.196 Sum_probs=78.4
Q ss_pred ecCChHhHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCC---CCCceeEEeeeehhh
Q psy1420 103 IDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPI---ESDSYSAYTIAFGIR 179 (241)
Q Consensus 103 ~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~---~~~~~D~V~~~~~l~ 179 (241)
+|+|+.|++.++++.. .++++..+|+..++. ++++||+|+++.+++
T Consensus 26 vD~s~~ml~~a~~~~~-------------------------------~~~~~~~~d~~~~~~~~~~~~~fD~V~~~~~l~ 74 (176)
T 2ld4_A 26 VEALKGLVDKLQALTG-------------------------------NEGRVSVENIKQLLQSAHKESSFDIILSGLVPG 74 (176)
T ss_dssp HHHHHHHHHHHHHHTT-------------------------------TTSEEEEEEGGGGGGGCCCSSCEEEEEECCSTT
T ss_pred eeCCHHHHHHHHHhcc-------------------------------cCcEEEEechhcCccccCCCCCEeEEEECChhh
Confidence 8899999999988765 247889999988876 678999999999999
Q ss_pred cc-ccHHHHHHHHHHhccCCcEEEEEec------------CHHHHHHHHHHCCCceEEEEE
Q psy1420 180 NV-TRIDKALSEAYRVLKPGGRFLCLEF------------SHEEFKSMIESAGFQYVTYEN 227 (241)
Q Consensus 180 ~~-~~~~~~l~~~~~~LkpgG~l~i~~~------------~~~~~~~~l~~~Gf~~~~~~~ 227 (241)
++ +++..++++++++|||||++++... +.+++.++++++|| +. +..
T Consensus 75 ~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf-i~-~~~ 133 (176)
T 2ld4_A 75 STTLHSAEILAEIARILRPGGCLFLKEPVETAVDNNSKVKTASKLCSALTLSGL-VE-VKE 133 (176)
T ss_dssp CCCCCCHHHHHHHHHHEEEEEEEEEEEEEESSSCSSSSSCCHHHHHHHHHHTTC-EE-EEE
T ss_pred hcccCHHHHHHHHHHHCCCCEEEEEEcccccccccccccCCHHHHHHHHHHCCC-cE-eec
Confidence 99 9999999999999999999998542 14789999999999 44 444
No 123
>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*
Probab=99.46 E-value=1.2e-12 Score=112.03 Aligned_cols=147 Identities=16% Similarity=0.090 Sum_probs=101.4
Q ss_pred HHHHhhc---CCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHh
Q psy1420 33 DIFIDRL---GPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPR 109 (241)
Q Consensus 33 ~~~~~~l---~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~ 109 (241)
..++..+ ..+++.+|||+|||+|.++ ..++..++ ....++++|+++.+
T Consensus 63 ~~ll~~l~~~~l~~g~~VLDlG~GtG~~t-------------~~la~~v~----------------~~G~V~avD~s~~~ 113 (232)
T 3id6_C 63 GAILKGLKTNPIRKGTKVLYLGAASGTTI-------------SHVSDIIE----------------LNGKAYGVEFSPRV 113 (232)
T ss_dssp HHHHTTCSCCSCCTTCEEEEETCTTSHHH-------------HHHHHHHT----------------TTSEEEEEECCHHH
T ss_pred HHHHhhhhhcCCCCCCEEEEEeecCCHHH-------------HHHHHHhC----------------CCCEEEEEECcHHH
Confidence 4444444 4789999999999999988 55544222 35689999999999
Q ss_pred HHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCC---CCCCceeEEeeeehhhccccHHH
Q psy1420 110 LRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELP---IESDSYSAYTIAFGIRNVTRIDK 186 (241)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~~D~V~~~~~l~~~~~~~~ 186 (241)
++.+.+.+. +. .++.++.+|+.... ...++||+|++.... ++...
T Consensus 114 l~~l~~~a~-------------------------~r----~nv~~i~~Da~~~~~~~~~~~~~D~I~~d~a~---~~~~~ 161 (232)
T 3id6_C 114 VRELLLVAQ-------------------------RR----PNIFPLLADARFPQSYKSVVENVDVLYVDIAQ---PDQTD 161 (232)
T ss_dssp HHHHHHHHH-------------------------HC----TTEEEEECCTTCGGGTTTTCCCEEEEEECCCC---TTHHH
T ss_pred HHHHHHHhh-------------------------hc----CCeEEEEcccccchhhhccccceEEEEecCCC---hhHHH
Confidence 766554443 11 26888899987643 124689999987543 44444
Q ss_pred HH-HHHHHhccCCcEEEEEecCH------------HHHHHHHHHCCCceEEEEEec--CceeEEEeeec
Q psy1420 187 AL-SEAYRVLKPGGRFLCLEFSH------------EEFKSMIESAGFQYVTYENLT--FGVVAIHSGFK 240 (241)
Q Consensus 187 ~l-~~~~~~LkpgG~l~i~~~~~------------~~~~~~l~~~Gf~~~~~~~~~--~~~~~~~~~~~ 240 (241)
.+ ..+.+.|||||+|++..... ++..+.|+++||++.+..++. .--+.++++++
T Consensus 162 il~~~~~~~LkpGG~lvisik~~~~d~t~~~~e~~~~~~~~L~~~gf~~~~~~~l~p~~~~h~~v~~~~ 230 (232)
T 3id6_C 162 IAIYNAKFFLKVNGDMLLVIKARSIDVTKDPKEIYKTEVEKLENSNFETIQIINLDPYDKDHAIVLSKY 230 (232)
T ss_dssp HHHHHHHHHEEEEEEEEEEEC-------CCSSSSTTHHHHHHHHTTEEEEEEEECTTTCSSCEEEEEEE
T ss_pred HHHHHHHHhCCCCeEEEEEEccCCcccCCCHHHHHHHHHHHHHHCCCEEEEEeccCCCcCceEEEEEEe
Confidence 44 55666999999999863211 566778889999999988873 23456666654
No 124
>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}
Probab=99.46 E-value=1.7e-13 Score=124.80 Aligned_cols=139 Identities=13% Similarity=0.093 Sum_probs=100.7
Q ss_pred HHhhhhhccccchhhhhhhhHHHHHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCC
Q psy1420 8 VFENVAKSYDTMNDAMSFGIHRLWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWK 87 (241)
Q Consensus 8 ~f~~~~~~yd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (241)
+|+..+..|+..+..........+.+.+.+.....++.+|||+|||+|.++ ..++.
T Consensus 28 yf~~ya~~~~~~~~l~d~~r~~~~~~~i~~~~~~~~~~~VLDlGcGtG~ls-------------~~la~----------- 83 (376)
T 3r0q_C 28 YFCTYSFLYHQKDMLSDRVRMDAYFNAVFQNKHHFEGKTVLDVGTGSGILA-------------IWSAQ----------- 83 (376)
T ss_dssp CTTGGGCHHHHHHHHTCHHHHHHHHHHHHTTTTTTTTCEEEEESCTTTHHH-------------HHHHH-----------
T ss_pred HHHHHHHhHHHHHHhcChHHHHHHHHHHHhccccCCCCEEEEeccCcCHHH-------------HHHHh-----------
Confidence 445555444432212222223445666666666778889999999999988 43333
Q ss_pred cchhhhcccCCCceeecCChHhHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCC
Q psy1420 88 PYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESD 167 (241)
Q Consensus 88 ~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 167 (241)
....+++++|++ .+++.+++++. ..++. ++++++++|+.+.+.+ +
T Consensus 84 -------~g~~~V~gvD~s-~~~~~a~~~~~-------------------------~~~~~-~~v~~~~~d~~~~~~~-~ 128 (376)
T 3r0q_C 84 -------AGARKVYAVEAT-KMADHARALVK-------------------------ANNLD-HIVEVIEGSVEDISLP-E 128 (376)
T ss_dssp -------TTCSEEEEEESS-TTHHHHHHHHH-------------------------HTTCT-TTEEEEESCGGGCCCS-S
T ss_pred -------cCCCEEEEEccH-HHHHHHHHHHH-------------------------HcCCC-CeEEEEECchhhcCcC-C
Confidence 123489999999 99999999887 55655 5799999999998776 7
Q ss_pred ceeEEeeeehhhcc---ccHHHHHHHHHHhccCCcEEEEEe
Q psy1420 168 SYSAYTIAFGIRNV---TRIDKALSEAYRVLKPGGRFLCLE 205 (241)
Q Consensus 168 ~~D~V~~~~~l~~~---~~~~~~l~~~~~~LkpgG~l~i~~ 205 (241)
+||+|++....+.. ..+..++..+.++|||||++++..
T Consensus 129 ~~D~Iv~~~~~~~l~~e~~~~~~l~~~~~~LkpgG~li~~~ 169 (376)
T 3r0q_C 129 KVDVIISEWMGYFLLRESMFDSVISARDRWLKPTGVMYPSH 169 (376)
T ss_dssp CEEEEEECCCBTTBTTTCTHHHHHHHHHHHEEEEEEEESSE
T ss_pred cceEEEEcChhhcccchHHHHHHHHHHHhhCCCCeEEEEec
Confidence 89999996644433 567889999999999999998643
No 125
>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13
Probab=99.44 E-value=8e-13 Score=114.66 Aligned_cols=134 Identities=14% Similarity=0.169 Sum_probs=104.7
Q ss_pred HHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHH
Q psy1420 33 DIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRF 112 (241)
Q Consensus 33 ~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~ 112 (241)
..++..+...++.+|||+|||+|..+ ..++..++ +...++++|+++.+++.
T Consensus 102 ~~i~~~~~~~~~~~VLDiG~G~G~~~-------------~~la~~~~----------------~~~~v~~vD~s~~~~~~ 152 (277)
T 1o54_A 102 SFIAMMLDVKEGDRIIDTGVGSGAMC-------------AVLARAVG----------------SSGKVFAYEKREEFAKL 152 (277)
T ss_dssp HHHHHHTTCCTTCEEEEECCTTSHHH-------------HHHHHHTT----------------TTCEEEEECCCHHHHHH
T ss_pred HHHHHHhCCCCCCEEEEECCcCCHHH-------------HHHHHHhC----------------CCcEEEEEECCHHHHHH
Confidence 35566677788899999999999988 44443111 25689999999999999
Q ss_pred HHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHHHHH
Q psy1420 113 LEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAY 192 (241)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~~~ 192 (241)
+++++. ..++. +++++...|+.+. ++.++||+|++ +.+++..+++++.
T Consensus 153 a~~~~~-------------------------~~~~~-~~v~~~~~d~~~~-~~~~~~D~V~~-----~~~~~~~~l~~~~ 200 (277)
T 1o54_A 153 AESNLT-------------------------KWGLI-ERVTIKVRDISEG-FDEKDVDALFL-----DVPDPWNYIDKCW 200 (277)
T ss_dssp HHHHHH-------------------------HTTCG-GGEEEECCCGGGC-CSCCSEEEEEE-----CCSCGGGTHHHHH
T ss_pred HHHHHH-------------------------HcCCC-CCEEEEECCHHHc-ccCCccCEEEE-----CCcCHHHHHHHHH
Confidence 999887 44442 3688899998776 45568999997 4567789999999
Q ss_pred HhccCCcEEEEEecCH---HHHHHHHHHCCCceEEEEE
Q psy1420 193 RVLKPGGRFLCLEFSH---EEFKSMIESAGFQYVTYEN 227 (241)
Q Consensus 193 ~~LkpgG~l~i~~~~~---~~~~~~l~~~Gf~~~~~~~ 227 (241)
++|+|||++++..... .++.+.+++.||..++...
T Consensus 201 ~~L~pgG~l~~~~~~~~~~~~~~~~l~~~gf~~~~~~~ 238 (277)
T 1o54_A 201 EALKGGGRFATVCPTTNQVQETLKKLQELPFIRIEVWE 238 (277)
T ss_dssp HHEEEEEEEEEEESSHHHHHHHHHHHHHSSEEEEEEEC
T ss_pred HHcCCCCEEEEEeCCHHHHHHHHHHHHHCCCceeEEEE
Confidence 9999999999988765 5667788889998766554
No 126
>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}
Probab=99.44 E-value=3.9e-13 Score=119.07 Aligned_cols=117 Identities=9% Similarity=0.120 Sum_probs=84.3
Q ss_pred CCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCC
Q psy1420 43 HDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPI 122 (241)
Q Consensus 43 ~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~ 122 (241)
++.+|||+|||+|..+ ..++. .....++|+|+|+.|++.|+++..
T Consensus 48 ~~~~VLDlGCG~G~~l-------------~~~~~------------------~~~~~v~GiD~S~~~l~~A~~~~~---- 92 (302)
T 2vdw_A 48 NKRKVLAIDFGNGADL-------------EKYFY------------------GEIALLVATDPDADAIARGNERYN---- 92 (302)
T ss_dssp SCCEEEETTCTTTTTH-------------HHHHH------------------TTCSEEEEEESCHHHHHHHHHHHH----
T ss_pred CCCeEEEEecCCcHhH-------------HHHHh------------------cCCCeEEEEECCHHHHHHHHHHHH----
Confidence 5779999999999866 33322 024579999999999999998876
Q ss_pred ccccccccceecceeeeeeccccCCC----CCCeeEEeccc------CCC--CCCCCceeEEeeeehhhcc---ccHHHH
Q psy1420 123 ESDSYSAYTIAFGIRNVTRIDKIDIP----NPRLRFLEANA------EEL--PIESDSYSAYTIAFGIRNV---TRIDKA 187 (241)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~d~------~~~--~~~~~~~D~V~~~~~l~~~---~~~~~~ 187 (241)
..+.. ...+++.+.|+ ..+ +.+.++||+|+|.+++|+. .+...+
T Consensus 93 ---------------------~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~~~~FD~V~~~~~lhy~~~~~~~~~~ 151 (302)
T 2vdw_A 93 ---------------------KLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFYFGKFNIIDWQFAIHYSFHPRHYATV 151 (302)
T ss_dssp ---------------------HHCC----CCCEEEEEECCTTSSSHHHHHHTTCCSSCEEEEEEESCGGGTCSTTTHHHH
T ss_pred ---------------------hccccccccccccchhhhhcccchhhhhhhccccCCCeeEEEECchHHHhCCHHHHHHH
Confidence 21110 00245666665 222 2345789999999999864 456899
Q ss_pred HHHHHHhccCCcEEEEEecCHHHHHHHH
Q psy1420 188 LSEAYRVLKPGGRFLCLEFSHEEFKSMI 215 (241)
Q Consensus 188 l~~~~~~LkpgG~l~i~~~~~~~~~~~l 215 (241)
+++++++|||||++++.+.....+..++
T Consensus 152 l~~~~r~LkpGG~~i~~~~~~~~~~~~~ 179 (302)
T 2vdw_A 152 MNNLSELTASGGKVLITTMDGDKLSKLT 179 (302)
T ss_dssp HHHHHHHEEEEEEEEEEEECHHHHTTCC
T ss_pred HHHHHHHcCCCCEEEEEeCCHHHHHHHH
Confidence 9999999999999999887765554433
No 127
>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*
Probab=99.44 E-value=3.2e-13 Score=121.43 Aligned_cols=114 Identities=15% Similarity=0.151 Sum_probs=91.1
Q ss_pred HHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhH
Q psy1420 31 WKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRL 110 (241)
Q Consensus 31 ~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~ 110 (241)
+.+.+.+.+...++.+|||+|||+|..+ ..++. ....+++++|+++ ++
T Consensus 52 ~~~~i~~~~~~~~~~~VLDiGcGtG~ls-------------~~la~------------------~g~~~v~gvD~s~-~~ 99 (340)
T 2fyt_A 52 YRDFIYQNPHIFKDKVVLDVGCGTGILS-------------MFAAK------------------AGAKKVLGVDQSE-IL 99 (340)
T ss_dssp HHHHHHHCGGGTTTCEEEEETCTTSHHH-------------HHHHH------------------TTCSEEEEEESST-HH
T ss_pred HHHHHHhhhhhcCCCEEEEeeccCcHHH-------------HHHHH------------------cCCCEEEEEChHH-HH
Confidence 4566666666677889999999999987 33333 1234799999997 99
Q ss_pred HHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeee---hhhccccHHHH
Q psy1420 111 RFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAF---GIRNVTRIDKA 187 (241)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~---~l~~~~~~~~~ 187 (241)
+.+++++. ..++. ++++++.+|+.+.+.+.++||+|++.. .+.+..++..+
T Consensus 100 ~~a~~~~~-------------------------~~~~~-~~i~~~~~d~~~~~~~~~~~D~Ivs~~~~~~l~~~~~~~~~ 153 (340)
T 2fyt_A 100 YQAMDIIR-------------------------LNKLE-DTITLIKGKIEEVHLPVEKVDVIISEWMGYFLLFESMLDSV 153 (340)
T ss_dssp HHHHHHHH-------------------------HTTCT-TTEEEEESCTTTSCCSCSCEEEEEECCCBTTBTTTCHHHHH
T ss_pred HHHHHHHH-------------------------HcCCC-CcEEEEEeeHHHhcCCCCcEEEEEEcCchhhccCHHHHHHH
Confidence 99998887 55554 579999999999888778999999876 45566778899
Q ss_pred HHHHHHhccCCcEEE
Q psy1420 188 LSEAYRVLKPGGRFL 202 (241)
Q Consensus 188 l~~~~~~LkpgG~l~ 202 (241)
+.++.++|||||+++
T Consensus 154 l~~~~~~LkpgG~li 168 (340)
T 2fyt_A 154 LYAKNKYLAKGGSVY 168 (340)
T ss_dssp HHHHHHHEEEEEEEE
T ss_pred HHHHHhhcCCCcEEE
Confidence 999999999999987
No 128
>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*
Probab=99.44 E-value=2.8e-13 Score=114.95 Aligned_cols=131 Identities=20% Similarity=0.269 Sum_probs=92.7
Q ss_pred CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCC-hHhHHHH---HHHH
Q psy1420 42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIP-NPRLRFL---EANA 117 (241)
Q Consensus 42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s-~~~~~~~---~~~~ 117 (241)
.++.+|||+|||+|..+ ..++. .. ....++|+|+| +.|++.| ++++
T Consensus 23 ~~~~~vLDiGCG~G~~~-------------~~la~-------~~----------~~~~v~GvD~s~~~ml~~A~~A~~~~ 72 (225)
T 3p2e_A 23 QFDRVHIDLGTGDGRNI-------------YKLAI-------ND----------QNTFYIGIDPVKENLFDISKKIIKKP 72 (225)
T ss_dssp TCSEEEEEETCTTSHHH-------------HHHHH-------TC----------TTEEEEEECSCCGGGHHHHHHHTSCG
T ss_pred CCCCEEEEEeccCcHHH-------------HHHHH-------hC----------CCCEEEEEeCCHHHHHHHHHHHHHHH
Confidence 56779999999999988 33331 01 35689999999 6677665 5555
Q ss_pred hcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCC-CCceeEEeeeehhh-----ccccHHHHHHHH
Q psy1420 118 EELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIE-SDSYSAYTIAFGIR-----NVTRIDKALSEA 191 (241)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~D~V~~~~~l~-----~~~~~~~~l~~~ 191 (241)
. +.+++ ++.+.++|+..+|.. .+.+|.|.+++... ...+...+++++
T Consensus 73 ~-------------------------~~~~~--~v~~~~~d~~~l~~~~~d~v~~i~~~~~~~~~~~~~~~~~~~~l~~~ 125 (225)
T 3p2e_A 73 S-------------------------KGGLS--NVVFVIAAAESLPFELKNIADSISILFPWGTLLEYVIKPNRDILSNV 125 (225)
T ss_dssp G-------------------------GTCCS--SEEEECCBTTBCCGGGTTCEEEEEEESCCHHHHHHHHTTCHHHHHHH
T ss_pred H-------------------------HcCCC--CeEEEEcCHHHhhhhccCeEEEEEEeCCCcHHhhhhhcchHHHHHHH
Confidence 4 44444 689999999988632 25666666654322 123446789999
Q ss_pred HHhccCCcEEEEEe------------------cCH-----HHHHHHHHHCCCceEEEEEec
Q psy1420 192 YRVLKPGGRFLCLE------------------FSH-----EEFKSMIESAGFQYVTYENLT 229 (241)
Q Consensus 192 ~~~LkpgG~l~i~~------------------~~~-----~~~~~~l~~~Gf~~~~~~~~~ 229 (241)
+++|||||++++.. .+. +++...++++||++...+.+.
T Consensus 126 ~r~LkpGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~l~~aGf~v~~~~~~~ 186 (225)
T 3p2e_A 126 ADLAKKEAHFEFVTTYSDSYEEAEIKKRGLPLLSKAYFLSEQYKAELSNSGFRIDDVKELD 186 (225)
T ss_dssp HTTEEEEEEEEEEECCCC--------------CCHHHHHSHHHHHHHHHHTCEEEEEEEEC
T ss_pred HHhcCCCcEEEEEEeccccchhchhhhcCCCCCChhhcchHHHHHHHHHcCCCeeeeeecC
Confidence 99999999998821 111 248899999999998887654
No 129
>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*
Probab=99.44 E-value=1.2e-12 Score=112.70 Aligned_cols=125 Identities=22% Similarity=0.215 Sum_probs=97.5
Q ss_pred CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCC
Q psy1420 42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP 121 (241)
Q Consensus 42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~ 121 (241)
.++.+|||+|||+|..+ ..+.. ...+++++|+++.+++.+++++.
T Consensus 119 ~~~~~VLDiGcG~G~l~-------------~~la~-------------------~g~~v~gvDi~~~~v~~a~~n~~--- 163 (254)
T 2nxc_A 119 RPGDKVLDLGTGSGVLA-------------IAAEK-------------------LGGKALGVDIDPMVLPQAEANAK--- 163 (254)
T ss_dssp CTTCEEEEETCTTSHHH-------------HHHHH-------------------TTCEEEEEESCGGGHHHHHHHHH---
T ss_pred CCCCEEEEecCCCcHHH-------------HHHHH-------------------hCCeEEEEECCHHHHHHHHHHHH---
Confidence 56789999999999988 43333 23389999999999999999887
Q ss_pred CccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHHHHHHhccCCcEE
Q psy1420 122 IESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRF 201 (241)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l 201 (241)
..++. +++..+|+... .+.++||+|+++...+ .....+..+.++|||||++
T Consensus 164 ----------------------~~~~~---v~~~~~d~~~~-~~~~~fD~Vv~n~~~~---~~~~~l~~~~~~LkpgG~l 214 (254)
T 2nxc_A 164 ----------------------RNGVR---PRFLEGSLEAA-LPFGPFDLLVANLYAE---LHAALAPRYREALVPGGRA 214 (254)
T ss_dssp ----------------------HTTCC---CEEEESCHHHH-GGGCCEEEEEEECCHH---HHHHHHHHHHHHEEEEEEE
T ss_pred ----------------------HcCCc---EEEEECChhhc-CcCCCCCEEEECCcHH---HHHHHHHHHHHHcCCCCEE
Confidence 44432 67788887652 3356899999875543 3568899999999999999
Q ss_pred EEEecC---HHHHHHHHHHCCCceEEEEEecC
Q psy1420 202 LCLEFS---HEEFKSMIESAGFQYVTYENLTF 230 (241)
Q Consensus 202 ~i~~~~---~~~~~~~l~~~Gf~~~~~~~~~~ 230 (241)
++.... .+++.+.++++||++++......
T Consensus 215 ils~~~~~~~~~v~~~l~~~Gf~~~~~~~~~~ 246 (254)
T 2nxc_A 215 LLTGILKDRAPLVREAMAGAGFRPLEEAAEGE 246 (254)
T ss_dssp EEEEEEGGGHHHHHHHHHHTTCEEEEEEEETT
T ss_pred EEEeeccCCHHHHHHHHHHCCCEEEEEeccCC
Confidence 987543 38899999999999988776543
No 130
>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}
Probab=99.44 E-value=7.3e-13 Score=111.84 Aligned_cols=142 Identities=13% Similarity=0.071 Sum_probs=99.4
Q ss_pred hcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHH
Q psy1420 38 RLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANA 117 (241)
Q Consensus 38 ~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~ 117 (241)
.+...++.+|||+|||+|.++ ..++..+| ....++++|+++.+++.+.+.+
T Consensus 72 ~~~~~~~~~vLDlG~G~G~~~-------------~~la~~~g----------------~~~~v~gvD~s~~~i~~~~~~a 122 (233)
T 2ipx_A 72 QIHIKPGAKVLYLGAASGTTV-------------SHVSDIVG----------------PDGLVYAVEFSHRSGRDLINLA 122 (233)
T ss_dssp CCCCCTTCEEEEECCTTSHHH-------------HHHHHHHC----------------TTCEEEEECCCHHHHHHHHHHH
T ss_pred eecCCCCCEEEEEcccCCHHH-------------HHHHHHhC----------------CCcEEEEEECCHHHHHHHHHHh
Confidence 445678889999999999988 44444111 2357999999999988887776
Q ss_pred hcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCC---CCCCCceeEEeeeehhhccccHHHHHHHHHHh
Q psy1420 118 EELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL---PIESDSYSAYTIAFGIRNVTRIDKALSEAYRV 194 (241)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~ 194 (241)
. .. .++.+..+|+... +...++||+|++... .......++.++.++
T Consensus 123 ~-------------------------~~----~~v~~~~~d~~~~~~~~~~~~~~D~V~~~~~--~~~~~~~~~~~~~~~ 171 (233)
T 2ipx_A 123 K-------------------------KR----TNIIPVIEDARHPHKYRMLIAMVDVIFADVA--QPDQTRIVALNAHTF 171 (233)
T ss_dssp H-------------------------HC----TTEEEECSCTTCGGGGGGGCCCEEEEEECCC--CTTHHHHHHHHHHHH
T ss_pred h-------------------------cc----CCeEEEEcccCChhhhcccCCcEEEEEEcCC--CccHHHHHHHHHHHH
Confidence 6 21 3688999998873 444678999998544 122224558889999
Q ss_pred ccCCcEEEEEecCH-------------HHHHHHHHHCCCceEEEEEecC--ceeEEEeeec
Q psy1420 195 LKPGGRFLCLEFSH-------------EEFKSMIESAGFQYVTYENLTF--GVVAIHSGFK 240 (241)
Q Consensus 195 LkpgG~l~i~~~~~-------------~~~~~~l~~~Gf~~~~~~~~~~--~~~~~~~~~~ 240 (241)
|||||++++..... ++ .++++++||++++...... ....++++++
T Consensus 172 LkpgG~l~i~~~~~~~~~~~~~~~~~~~~-~~~l~~~Gf~~~~~~~~~~~~~~~~~v~~~~ 231 (233)
T 2ipx_A 172 LRNGGHFVISIKANCIDSTASAEAVFASE-VKKMQQENMKPQEQLTLEPYERDHAVVVGVY 231 (233)
T ss_dssp EEEEEEEEEEEEHHHHCSSSCHHHHHHHH-HHTTGGGTEEEEEEEECTTTSSSEEEEEEEE
T ss_pred cCCCeEEEEEEcccccccCCCHHHHHHHH-HHHHHHCCCceEEEEecCCccCCcEEEEEEe
Confidence 99999999854321 22 5788999999988766532 2344444443
No 131
>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3
Probab=99.43 E-value=1.7e-12 Score=108.98 Aligned_cols=139 Identities=13% Similarity=0.094 Sum_probs=94.4
Q ss_pred cCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHh
Q psy1420 39 LGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAE 118 (241)
Q Consensus 39 l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~ 118 (241)
+..+++.+|||+|||+|..+ ..++. .. ....++++|+|+.+++.+.+.+.
T Consensus 53 ~~~~~g~~VLDlGcGtG~~~-------------~~la~----~~-------------~~~~V~gvD~s~~~l~~~~~~a~ 102 (210)
T 1nt2_A 53 LKLRGDERVLYLGAASGTTV-------------SHLAD----IV-------------DEGIIYAVEYSAKPFEKLLELVR 102 (210)
T ss_dssp CCCCSSCEEEEETCTTSHHH-------------HHHHH----HT-------------TTSEEEEECCCHHHHHHHHHHHH
T ss_pred cCCCCCCEEEEECCcCCHHH-------------HHHHH----Hc-------------CCCEEEEEECCHHHHHHHHHHHh
Confidence 44578889999999999988 43333 11 13579999999998876665554
Q ss_pred cCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCC----CCCCCceeEEeeeehhhccccHHHHHHHHHHh
Q psy1420 119 ELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL----PIESDSYSAYTIAFGIRNVTRIDKALSEAYRV 194 (241)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~----~~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~ 194 (241)
+. .++.++.+|+... +.. ++||+|++.. ........++++++++
T Consensus 103 -------------------------~~----~~v~~~~~d~~~~~~~~~~~-~~fD~V~~~~--~~~~~~~~~l~~~~r~ 150 (210)
T 1nt2_A 103 -------------------------ER----NNIIPLLFDASKPWKYSGIV-EKVDLIYQDI--AQKNQIEILKANAEFF 150 (210)
T ss_dssp -------------------------HC----SSEEEECSCTTCGGGTTTTC-CCEEEEEECC--CSTTHHHHHHHHHHHH
T ss_pred -------------------------cC----CCeEEEEcCCCCchhhcccc-cceeEEEEec--cChhHHHHHHHHHHHH
Confidence 11 2467777777663 333 7899999873 1112334568999999
Q ss_pred ccCCcEEEEEec--------CHHHHH----HHHHHCCCceEEEEEec--CceeEEEeeec
Q psy1420 195 LKPGGRFLCLEF--------SHEEFK----SMIESAGFQYVTYENLT--FGVVAIHSGFK 240 (241)
Q Consensus 195 LkpgG~l~i~~~--------~~~~~~----~~l~~~Gf~~~~~~~~~--~~~~~~~~~~~ 240 (241)
|||||++++... ..+++. +.++++ |++++..+.. ..-+.+++++|
T Consensus 151 LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~-f~~~~~~~~~p~~~~h~~~~~~~ 209 (210)
T 1nt2_A 151 LKEKGEVVIMVKARSIDSTAEPEEVFKSVLKEMEGD-FKIVKHGSLMPYHRDHIFIHAYR 209 (210)
T ss_dssp EEEEEEEEEEEEHHHHCTTSCHHHHHHHHHHHHHTT-SEEEEEEECTTTCTTEEEEEEEE
T ss_pred hCCCCEEEEEEecCCccccCCHHHHHHHHHHHHHhh-cEEeeeecCCCCCCCcEEEEEEc
Confidence 999999998731 113331 237888 9999888773 22556667665
No 132
>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}
Probab=99.42 E-value=5.9e-13 Score=110.15 Aligned_cols=111 Identities=9% Similarity=0.050 Sum_probs=91.1
Q ss_pred HHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhH
Q psy1420 31 WKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRL 110 (241)
Q Consensus 31 ~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~ 110 (241)
....+.+.+...++.+|||+|||+|..+ ..++. ...+++++|+++.++
T Consensus 65 ~~~~~~~~l~~~~~~~vLdiG~G~G~~~-------------~~la~-------------------~~~~v~~vD~~~~~~ 112 (210)
T 3lbf_A 65 MVARMTELLELTPQSRVLEIGTGSGYQT-------------AILAH-------------------LVQHVCSVERIKGLQ 112 (210)
T ss_dssp HHHHHHHHTTCCTTCEEEEECCTTSHHH-------------HHHHH-------------------HSSEEEEEESCHHHH
T ss_pred HHHHHHHhcCCCCCCEEEEEcCCCCHHH-------------HHHHH-------------------hCCEEEEEecCHHHH
Confidence 3566677778888999999999999988 44444 246799999999999
Q ss_pred HHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHHH
Q psy1420 111 RFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSE 190 (241)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~ 190 (241)
+.+++++. ..++. ++++..+|+...+.+.++||+|++..+++++++ .
T Consensus 113 ~~a~~~~~-------------------------~~~~~--~v~~~~~d~~~~~~~~~~~D~i~~~~~~~~~~~------~ 159 (210)
T 3lbf_A 113 WQARRRLK-------------------------NLDLH--NVSTRHGDGWQGWQARAPFDAIIVTAAPPEIPT------A 159 (210)
T ss_dssp HHHHHHHH-------------------------HTTCC--SEEEEESCGGGCCGGGCCEEEEEESSBCSSCCT------H
T ss_pred HHHHHHHH-------------------------HcCCC--ceEEEECCcccCCccCCCccEEEEccchhhhhH------H
Confidence 99999887 44544 689999998886655678999999999988775 5
Q ss_pred HHHhccCCcEEEEEec
Q psy1420 191 AYRVLKPGGRFLCLEF 206 (241)
Q Consensus 191 ~~~~LkpgG~l~i~~~ 206 (241)
+.++|||||++++...
T Consensus 160 ~~~~L~pgG~lv~~~~ 175 (210)
T 3lbf_A 160 LMTQLDEGGILVLPVG 175 (210)
T ss_dssp HHHTEEEEEEEEEEEC
T ss_pred HHHhcccCcEEEEEEc
Confidence 8899999999998654
No 133
>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*
Probab=99.42 E-value=1.8e-12 Score=113.10 Aligned_cols=128 Identities=14% Similarity=0.202 Sum_probs=100.5
Q ss_pred HHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCC-CceeecCChHhH
Q psy1420 32 KDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQ-FPNQIDIPNPRL 110 (241)
Q Consensus 32 ~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~D~s~~~~ 110 (241)
+..+.+.+ +++.+|||+|||+|.++ ..++. ... +++++|+++.++
T Consensus 116 ~~~l~~~~--~~~~~VLDlgcG~G~~~-------------~~la~-------------------~~~~~V~~vD~s~~~~ 161 (278)
T 2frn_A 116 RVRMAKVA--KPDELVVDMFAGIGHLS-------------LPIAV-------------------YGKAKVIAIEKDPYTF 161 (278)
T ss_dssp HHHHHHHC--CTTCEEEETTCTTTTTH-------------HHHHH-------------------HTCCEEEEECCCHHHH
T ss_pred HHHHHHhC--CCCCEEEEecccCCHHH-------------HHHHH-------------------hCCCEEEEEECCHHHH
Confidence 34444443 46789999999999998 44443 122 699999999999
Q ss_pred HHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHHH
Q psy1420 111 RFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSE 190 (241)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~ 190 (241)
+.+++++. ..++. .+++++++|+.+.+. .++||+|++... .....++.+
T Consensus 162 ~~a~~n~~-------------------------~n~~~-~~v~~~~~D~~~~~~-~~~fD~Vi~~~p----~~~~~~l~~ 210 (278)
T 2frn_A 162 KFLVENIH-------------------------LNKVE-DRMSAYNMDNRDFPG-ENIADRILMGYV----VRTHEFIPK 210 (278)
T ss_dssp HHHHHHHH-------------------------HTTCT-TTEEEECSCTTTCCC-CSCEEEEEECCC----SSGGGGHHH
T ss_pred HHHHHHHH-------------------------HcCCC-ceEEEEECCHHHhcc-cCCccEEEECCc----hhHHHHHHH
Confidence 99999988 55655 468999999998865 678999998533 344678899
Q ss_pred HHHhccCCcEEEEEecCH---------HHHHHHHHHCCCceEE
Q psy1420 191 AYRVLKPGGRFLCLEFSH---------EEFKSMIESAGFQYVT 224 (241)
Q Consensus 191 ~~~~LkpgG~l~i~~~~~---------~~~~~~l~~~Gf~~~~ 224 (241)
+.++|||||++++.+.+. +.+.+.++++||.+..
T Consensus 211 ~~~~LkpgG~l~~~~~~~~~~~~~~~~~~i~~~~~~~G~~~~~ 253 (278)
T 2frn_A 211 ALSIAKDGAIIHYHNTVPEKLMPREPFETFKRITKEYGYDVEK 253 (278)
T ss_dssp HHHHEEEEEEEEEEEEEEGGGTTTTTHHHHHHHHHHTTCEEEE
T ss_pred HHHHCCCCeEEEEEEeeccccccccHHHHHHHHHHHcCCeeEE
Confidence 999999999999977653 7889999999998766
No 134
>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*
Probab=99.42 E-value=1.6e-12 Score=118.86 Aligned_cols=118 Identities=15% Similarity=0.209 Sum_probs=93.3
Q ss_pred HHHHHHhhcC--CCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChH
Q psy1420 31 WKDIFIDRLG--PTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNP 108 (241)
Q Consensus 31 ~~~~~~~~l~--~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~ 108 (241)
+.+.+.+.+. ..++.+|||+|||+|..+ ..++. ...+++++|+++.
T Consensus 219 ll~~l~~~l~~~~~~~~~VLDlGcG~G~~~-------------~~la~-------------------~g~~V~gvDis~~ 266 (381)
T 3dmg_A 219 LLEALQERLGPEGVRGRQVLDLGAGYGALT-------------LPLAR-------------------MGAEVVGVEDDLA 266 (381)
T ss_dssp HHHHHHHHHCTTTTTTCEEEEETCTTSTTH-------------HHHHH-------------------TTCEEEEEESBHH
T ss_pred HHHHHHHhhcccCCCCCEEEEEeeeCCHHH-------------HHHHH-------------------cCCEEEEEECCHH
Confidence 3444444432 346779999999999998 44444 3458999999999
Q ss_pred hHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhc-----ccc
Q psy1420 109 RLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRN-----VTR 183 (241)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~-----~~~ 183 (241)
+++.+++++. ..++. ++++..|+...+.+.++||+|+++..+++ ..+
T Consensus 267 al~~A~~n~~-------------------------~~~~~---v~~~~~D~~~~~~~~~~fD~Ii~npp~~~~~~~~~~~ 318 (381)
T 3dmg_A 267 SVLSLQKGLE-------------------------ANALK---AQALHSDVDEALTEEARFDIIVTNPPFHVGGAVILDV 318 (381)
T ss_dssp HHHHHHHHHH-------------------------HTTCC---CEEEECSTTTTSCTTCCEEEEEECCCCCTTCSSCCHH
T ss_pred HHHHHHHHHH-------------------------HcCCC---eEEEEcchhhccccCCCeEEEEECCchhhcccccHHH
Confidence 9999999987 44433 78999999887766679999999988876 456
Q ss_pred HHHHHHHHHHhccCCcEEEEEecCH
Q psy1420 184 IDKALSEAYRVLKPGGRFLCLEFSH 208 (241)
Q Consensus 184 ~~~~l~~~~~~LkpgG~l~i~~~~~ 208 (241)
...+++++.++|||||+++++....
T Consensus 319 ~~~~l~~~~~~LkpGG~l~iv~n~~ 343 (381)
T 3dmg_A 319 AQAFVNVAAARLRPGGVFFLVSNPF 343 (381)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEECTT
T ss_pred HHHHHHHHHHhcCcCcEEEEEEcCC
Confidence 7899999999999999999986555
No 135
>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13
Probab=99.41 E-value=1.6e-12 Score=112.36 Aligned_cols=134 Identities=10% Similarity=0.125 Sum_probs=102.6
Q ss_pred HHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHH
Q psy1420 33 DIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRF 112 (241)
Q Consensus 33 ~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~ 112 (241)
..++..+...++.+|||+|||+|..+ ..++..++ ....++++|+++.+++.
T Consensus 89 ~~i~~~~~~~~~~~vLdiG~G~G~~~-------------~~l~~~~~----------------~~~~v~~vD~~~~~~~~ 139 (280)
T 1i9g_A 89 AQIVHEGDIFPGARVLEAGAGSGALT-------------LSLLRAVG----------------PAGQVISYEQRADHAEH 139 (280)
T ss_dssp HHHHHHTTCCTTCEEEEECCTTSHHH-------------HHHHHHHC----------------TTSEEEEECSCHHHHHH
T ss_pred HHHHHHcCCCCCCEEEEEcccccHHH-------------HHHHHHhC----------------CCCEEEEEeCCHHHHHH
Confidence 45666777788999999999999988 44443111 25689999999999999
Q ss_pred HHHHHhcCCCccccccccceecceeeeeecccc-C-CCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHHH
Q psy1420 113 LEANAEELPIESDSYSAYTIAFGIRNVTRIDKI-D-IPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSE 190 (241)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~ 190 (241)
+++++. .. + +. +++++...|+.+.+.+.++||+|++ +.+++..++++
T Consensus 140 a~~~~~-------------------------~~~g~~~-~~v~~~~~d~~~~~~~~~~~D~v~~-----~~~~~~~~l~~ 188 (280)
T 1i9g_A 140 ARRNVS-------------------------GCYGQPP-DNWRLVVSDLADSELPDGSVDRAVL-----DMLAPWEVLDA 188 (280)
T ss_dssp HHHHHH-------------------------HHHTSCC-TTEEEECSCGGGCCCCTTCEEEEEE-----ESSCGGGGHHH
T ss_pred HHHHHH-------------------------HhcCCCC-CcEEEEECchHhcCCCCCceeEEEE-----CCcCHHHHHHH
Confidence 998876 33 2 22 4689999999888776778999997 45677789999
Q ss_pred HHHhccCCcEEEEEecCHH---HHHHHHHH-CCCceEEEE
Q psy1420 191 AYRVLKPGGRFLCLEFSHE---EFKSMIES-AGFQYVTYE 226 (241)
Q Consensus 191 ~~~~LkpgG~l~i~~~~~~---~~~~~l~~-~Gf~~~~~~ 226 (241)
+.++|+|||++++.....+ ++.+.+++ .||...+..
T Consensus 189 ~~~~L~pgG~l~~~~~~~~~~~~~~~~l~~~~~f~~~~~~ 228 (280)
T 1i9g_A 189 VSRLLVAGGVLMVYVATVTQLSRIVEALRAKQCWTEPRAW 228 (280)
T ss_dssp HHHHEEEEEEEEEEESSHHHHHHHHHHHHHHSSBCCCEEE
T ss_pred HHHhCCCCCEEEEEeCCHHHHHHHHHHHHhcCCcCCcEEE
Confidence 9999999999999887763 44445555 788655443
No 136
>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*
Probab=99.41 E-value=4.7e-13 Score=120.63 Aligned_cols=114 Identities=12% Similarity=0.137 Sum_probs=89.1
Q ss_pred HHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHH
Q psy1420 32 KDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLR 111 (241)
Q Consensus 32 ~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~ 111 (241)
.+.+.+.....++.+|||+|||+|.++ ..++. ....+++++|+|+ +++
T Consensus 55 ~~~i~~~~~~~~~~~VLDvGcG~G~~~-------------~~la~------------------~g~~~v~gvD~s~-~l~ 102 (349)
T 3q7e_A 55 RNSMFHNRHLFKDKVVLDVGSGTGILC-------------MFAAK------------------AGARKVIGIECSS-ISD 102 (349)
T ss_dssp HHHHHTCHHHHTTCEEEEESCTTSHHH-------------HHHHH------------------TTCSEEEEEECST-HHH
T ss_pred HHHHHhccccCCCCEEEEEeccchHHH-------------HHHHH------------------CCCCEEEEECcHH-HHH
Confidence 344443333457789999999999988 44433 1245899999995 999
Q ss_pred HHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeeh---hhccccHHHHH
Q psy1420 112 FLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFG---IRNVTRIDKAL 188 (241)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~---l~~~~~~~~~l 188 (241)
.+++++. ..++. ++++++.+|+.+.+.+.++||+|++... +.+...+..++
T Consensus 103 ~a~~~~~-------------------------~~~~~-~~v~~~~~d~~~~~~~~~~fD~Iis~~~~~~l~~~~~~~~~l 156 (349)
T 3q7e_A 103 YAVKIVK-------------------------ANKLD-HVVTIIKGKVEEVELPVEKVDIIISEWMGYCLFYESMLNTVL 156 (349)
T ss_dssp HHHHHHH-------------------------HTTCT-TTEEEEESCTTTCCCSSSCEEEEEECCCBBTBTBTCCHHHHH
T ss_pred HHHHHHH-------------------------HcCCC-CcEEEEECcHHHccCCCCceEEEEEccccccccCchhHHHHH
Confidence 9999887 55655 5699999999999888889999998654 44557889999
Q ss_pred HHHHHhccCCcEEEE
Q psy1420 189 SEAYRVLKPGGRFLC 203 (241)
Q Consensus 189 ~~~~~~LkpgG~l~i 203 (241)
..+.++|||||+++.
T Consensus 157 ~~~~r~LkpgG~li~ 171 (349)
T 3q7e_A 157 HARDKWLAPDGLIFP 171 (349)
T ss_dssp HHHHHHEEEEEEEES
T ss_pred HHHHHhCCCCCEEcc
Confidence 999999999999863
No 137
>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*
Probab=99.41 E-value=9e-13 Score=118.58 Aligned_cols=131 Identities=18% Similarity=0.240 Sum_probs=100.1
Q ss_pred CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCC
Q psy1420 42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP 121 (241)
Q Consensus 42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~ 121 (241)
.+..+|||+|||+|..+ ..++. . . +...++++|+ +.+++.+++
T Consensus 192 ~~~~~vlDvG~G~G~~~-------------~~l~~----~---~----------p~~~~~~~D~-~~~~~~a~~------ 234 (358)
T 1zg3_A 192 EGLESLVDVGGGTGGVT-------------KLIHE----I---F----------PHLKCTVFDQ-PQVVGNLTG------ 234 (358)
T ss_dssp HTCSEEEEETCTTSHHH-------------HHHHH----H---C----------TTSEEEEEEC-HHHHSSCCC------
T ss_pred cCCCEEEEECCCcCHHH-------------HHHHH----H---C----------CCCeEEEecc-HHHHhhccc------
Confidence 45679999999999988 44443 1 0 2456889998 666643321
Q ss_pred CccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHH--HHHHHHHHhccC--
Q psy1420 122 IESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRID--KALSEAYRVLKP-- 197 (241)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~--~~l~~~~~~Lkp-- 197 (241)
. +++++..+|+.. +.+ +||+|++..++|++++.. ++|++++++|+|
T Consensus 235 -------------------------~--~~v~~~~~d~~~-~~~--~~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~p~~ 284 (358)
T 1zg3_A 235 -------------------------N--ENLNFVGGDMFK-SIP--SADAVLLKWVLHDWNDEQSLKILKNSKEAISHKG 284 (358)
T ss_dssp -------------------------C--SSEEEEECCTTT-CCC--CCSEEEEESCGGGSCHHHHHHHHHHHHHHTGGGG
T ss_pred -------------------------C--CCcEEEeCccCC-CCC--CceEEEEcccccCCCHHHHHHHHHHHHHhCCCCC
Confidence 1 258899999887 554 499999999999999877 999999999999
Q ss_pred -CcEEEEEecC-------------------------------HHHHHHHHHHCCCceEEEEEecCceeEEEeeec
Q psy1420 198 -GGRFLCLEFS-------------------------------HEEFKSMIESAGFQYVTYENLTFGVVAIHSGFK 240 (241)
Q Consensus 198 -gG~l~i~~~~-------------------------------~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~~ 240 (241)
||++++.+.. .++|.++++++||+.+++... .|...++.+++
T Consensus 285 ~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~-~~~~~vie~~~ 358 (358)
T 1zg3_A 285 KDGKVIIIDISIDETSDDRGLTELQLDYDLVMLTMFLGKERTKQEWEKLIYDAGFSSYKITPI-SGFKSLIEVYP 358 (358)
T ss_dssp GGCEEEEEECEECTTCSCHHHHHHHHHHHHHHHHHHSCCCEEHHHHHHHHHHTTCCEEEEEEE-TTTEEEEEEEC
T ss_pred CCcEEEEEEeccCCCCccchhhhHHHhhCHHHhccCCCCCCCHHHHHHHHHHcCCCeeEEEec-CCCcEEEEEeC
Confidence 9999987531 178999999999999998874 55556666543
No 138
>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*
Probab=99.41 E-value=2.6e-14 Score=121.03 Aligned_cols=131 Identities=13% Similarity=0.043 Sum_probs=99.9
Q ss_pred CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCC
Q psy1420 42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP 121 (241)
Q Consensus 42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~ 121 (241)
.++.+|||+|||+|..+ ..++. ....++++|+++.+++.+++++.
T Consensus 77 ~~~~~vLD~gcG~G~~~-------------~~la~-------------------~~~~v~~vD~s~~~~~~a~~~~~--- 121 (241)
T 3gdh_A 77 FKCDVVVDAFCGVGGNT-------------IQFAL-------------------TGMRVIAIDIDPVKIALARNNAE--- 121 (241)
T ss_dssp SCCSEEEETTCTTSHHH-------------HHHHH-------------------TTCEEEEEESCHHHHHHHHHHHH---
T ss_pred cCCCEEEECccccCHHH-------------HHHHH-------------------cCCEEEEEECCHHHHHHHHHHHH---
Confidence 36789999999999988 44444 34689999999999999999987
Q ss_pred CccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHHHHHHhccCCcEE
Q psy1420 122 IESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRF 201 (241)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l 201 (241)
..++. ++++++++|+...+ +.++||+|+++..+++..+....+.+++++|+|||.+
T Consensus 122 ----------------------~~~~~-~~~~~~~~d~~~~~-~~~~~D~v~~~~~~~~~~~~~~~~~~~~~~L~pgG~~ 177 (241)
T 3gdh_A 122 ----------------------VYGIA-DKIEFICGDFLLLA-SFLKADVVFLSPPWGGPDYATAETFDIRTMMSPDGFE 177 (241)
T ss_dssp ----------------------HTTCG-GGEEEEESCHHHHG-GGCCCSEEEECCCCSSGGGGGSSSBCTTTSCSSCHHH
T ss_pred ----------------------HcCCC-cCeEEEECChHHhc-ccCCCCEEEECCCcCCcchhhhHHHHHHhhcCCccee
Confidence 55553 36899999998876 4578999999998888887777888899999999996
Q ss_pred EEEec---------------CHHHHHHHHHHCCCceEEEEEecCc
Q psy1420 202 LCLEF---------------SHEEFKSMIESAGFQYVTYENLTFG 231 (241)
Q Consensus 202 ~i~~~---------------~~~~~~~~l~~~Gf~~~~~~~~~~~ 231 (241)
++... ..+++..++...|...+........
T Consensus 178 i~~~~~~~~~~~~~~lp~~~~~~~~~~~l~~~g~~~i~~~~~~~~ 222 (241)
T 3gdh_A 178 IFRLSKKITNNIVYFLPRNADIDQVASLAGPGGQVEIEQNFLNNK 222 (241)
T ss_dssp HHHHHHHHCSCEEEEEETTBCHHHHHHTTCTTCCEEEEEEEETTE
T ss_pred HHHHHHhhCCceEEECCCCCCHHHHHHHhccCCCEEEEehhhcCc
Confidence 54321 2266677777777655544444433
No 139
>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}
Probab=99.41 E-value=1.2e-12 Score=117.80 Aligned_cols=142 Identities=20% Similarity=0.211 Sum_probs=111.6
Q ss_pred HHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhH
Q psy1420 31 WKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRL 110 (241)
Q Consensus 31 ~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~ 110 (241)
....+.....+.++.+|||+|||+|..+ ..++...+ ....++|+|+++.++
T Consensus 191 la~~l~~~~~~~~~~~vLD~gcGsG~~~-------------ie~a~~~~----------------~~~~v~g~Di~~~~i 241 (354)
T 3tma_A 191 LAQALLRLADARPGMRVLDPFTGSGTIA-------------LEAASTLG----------------PTSPVYAGDLDEKRL 241 (354)
T ss_dssp HHHHHHHHTTCCTTCCEEESSCTTSHHH-------------HHHHHHHC----------------TTSCEEEEESCHHHH
T ss_pred HHHHHHHHhCCCCCCEEEeCCCCcCHHH-------------HHHHHhhC----------------CCceEEEEECCHHHH
Confidence 4456667777888899999999999988 44443110 246899999999999
Q ss_pred HHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehh--hcc------c
Q psy1420 111 RFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGI--RNV------T 182 (241)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l--~~~------~ 182 (241)
+.+++++. ..++. ++++.+.|+..++.+...||+|+++-.. +.. .
T Consensus 242 ~~a~~n~~-------------------------~~g~~--~i~~~~~D~~~~~~~~~~~D~Ii~npPyg~r~~~~~~~~~ 294 (354)
T 3tma_A 242 GLAREAAL-------------------------ASGLS--WIRFLRADARHLPRFFPEVDRILANPPHGLRLGRKEGLFH 294 (354)
T ss_dssp HHHHHHHH-------------------------HTTCT--TCEEEECCGGGGGGTCCCCSEEEECCCSCC----CHHHHH
T ss_pred HHHHHHHH-------------------------HcCCC--ceEEEeCChhhCccccCCCCEEEECCCCcCccCCcccHHH
Confidence 99999988 56654 6899999999987766779999995332 211 2
Q ss_pred cHHHHHHHHHHhccCCcEEEEEecCHHHHHHHHHHCCCceEEEEEec
Q psy1420 183 RIDKALSEAYRVLKPGGRFLCLEFSHEEFKSMIESAGFQYVTYENLT 229 (241)
Q Consensus 183 ~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~l~~~Gf~~~~~~~~~ 229 (241)
....+++++.++|||||++++.+...+.++++++ .||+..+...+.
T Consensus 295 ~~~~~~~~~~~~LkpgG~l~i~t~~~~~~~~~~~-~g~~~~~~~~l~ 340 (354)
T 3tma_A 295 LYWDFLRGALALLPPGGRVALLTLRPALLKRALP-PGFALRHARVVE 340 (354)
T ss_dssp HHHHHHHHHHHTSCTTCEEEEEESCHHHHHHHCC-TTEEEEEEEECC
T ss_pred HHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHhh-cCcEEEEEEEEE
Confidence 2378999999999999999999998888888888 999988877763
No 140
>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}
Probab=99.40 E-value=2.3e-12 Score=112.48 Aligned_cols=117 Identities=15% Similarity=0.121 Sum_probs=87.4
Q ss_pred HHHHHhhcC-CCCCCeEEEEecCC---CcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCCh
Q psy1420 32 KDIFIDRLG-PTHDTKLLDVAGGT---DPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPN 107 (241)
Q Consensus 32 ~~~~~~~l~-~~~~~~vLdvG~G~---G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~ 107 (241)
.+.+.+.+. ..+..+|||+|||+ |..+ ..+.. . .+..+++++|+|+
T Consensus 65 ~~~~~~~l~~~~~~~~vLDlGcG~pt~G~~~-------------~~~~~----~-------------~p~~~v~~vD~sp 114 (274)
T 2qe6_A 65 LVRGVRFLAGEAGISQFLDLGSGLPTVQNTH-------------EVAQS----V-------------NPDARVVYVDIDP 114 (274)
T ss_dssp HHHHHHHHHTTTCCCEEEEETCCSCCSSCHH-------------HHHHH----H-------------CTTCEEEEEESSH
T ss_pred HHHHHHHHhhccCCCEEEEECCCCCCCChHH-------------HHHHH----h-------------CCCCEEEEEECCh
Confidence 334444443 33446999999999 9765 21111 0 0256899999999
Q ss_pred HhHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCC-----------CCCCceeEEeeee
Q psy1420 108 PRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELP-----------IESDSYSAYTIAF 176 (241)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----------~~~~~~D~V~~~~ 176 (241)
.|++.+++++. . .++++++++|+...+ ++.++||+|++..
T Consensus 115 ~~l~~Ar~~~~-------------------------~----~~~v~~~~~D~~~~~~~~~~~~~~~~~d~~~~d~v~~~~ 165 (274)
T 2qe6_A 115 MVLTHGRALLA-------------------------K----DPNTAVFTADVRDPEYILNHPDVRRMIDFSRPAAIMLVG 165 (274)
T ss_dssp HHHHHHHHHHT-------------------------T----CTTEEEEECCTTCHHHHHHSHHHHHHCCTTSCCEEEETT
T ss_pred HHHHHHHHhcC-------------------------C----CCCeEEEEeeCCCchhhhccchhhccCCCCCCEEEEEec
Confidence 99999998875 2 146899999987531 2224799999999
Q ss_pred hhhcccc--HHHHHHHHHHhccCCcEEEEEecC
Q psy1420 177 GIRNVTR--IDKALSEAYRVLKPGGRFLCLEFS 207 (241)
Q Consensus 177 ~l~~~~~--~~~~l~~~~~~LkpgG~l~i~~~~ 207 (241)
++|++++ +..++++++++|+|||+|++.++.
T Consensus 166 vlh~~~d~~~~~~l~~~~~~L~pGG~l~i~~~~ 198 (274)
T 2qe6_A 166 MLHYLSPDVVDRVVGAYRDALAPGSYLFMTSLV 198 (274)
T ss_dssp TGGGSCTTTHHHHHHHHHHHSCTTCEEEEEEEB
T ss_pred hhhhCCcHHHHHHHHHHHHhCCCCcEEEEEEec
Confidence 9999987 899999999999999999987654
No 141
>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}
Probab=99.40 E-value=5.1e-13 Score=109.19 Aligned_cols=109 Identities=8% Similarity=0.043 Sum_probs=86.8
Q ss_pred CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCC
Q psy1420 42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP 121 (241)
Q Consensus 42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~ 121 (241)
.++.+|||+|||+|..+ ..++. . ...+++++|+++.+++.+++++.
T Consensus 43 ~~~~~vLDlgcG~G~~~-------------~~~~~--------~----------~~~~v~~vD~~~~~~~~a~~~~~--- 88 (189)
T 3p9n_A 43 LTGLAVLDLYAGSGALG-------------LEALS--------R----------GAASVLFVESDQRSAAVIARNIE--- 88 (189)
T ss_dssp CTTCEEEEETCTTCHHH-------------HHHHH--------T----------TCSEEEEEECCHHHHHHHHHHHH---
T ss_pred CCCCEEEEeCCCcCHHH-------------HHHHH--------C----------CCCeEEEEECCHHHHHHHHHHHH---
Confidence 56789999999999988 33222 1 24579999999999999999987
Q ss_pred CccccccccceecceeeeeeccccCCCCCCeeEEecccCCCC--CCCCceeEEeeeehhhcc-ccHHHHHHHHHH--hcc
Q psy1420 122 IESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELP--IESDSYSAYTIAFGIRNV-TRIDKALSEAYR--VLK 196 (241)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~D~V~~~~~l~~~-~~~~~~l~~~~~--~Lk 196 (241)
..++. +++++++|+.+.+ .+.++||+|+++...++. ++..+.+..+.+ +|+
T Consensus 89 ----------------------~~~~~--~v~~~~~d~~~~~~~~~~~~fD~i~~~~p~~~~~~~~~~~l~~~~~~~~L~ 144 (189)
T 3p9n_A 89 ----------------------ALGLS--GATLRRGAVAAVVAAGTTSPVDLVLADPPYNVDSADVDAILAALGTNGWTR 144 (189)
T ss_dssp ----------------------HHTCS--CEEEEESCHHHHHHHCCSSCCSEEEECCCTTSCHHHHHHHHHHHHHSSSCC
T ss_pred ----------------------HcCCC--ceEEEEccHHHHHhhccCCCccEEEECCCCCcchhhHHHHHHHHHhcCccC
Confidence 55543 6899999988763 335789999998777664 678899999999 999
Q ss_pred CCcEEEEEecCH
Q psy1420 197 PGGRFLCLEFSH 208 (241)
Q Consensus 197 pgG~l~i~~~~~ 208 (241)
|||++++.....
T Consensus 145 pgG~l~~~~~~~ 156 (189)
T 3p9n_A 145 EGTVAVVERATT 156 (189)
T ss_dssp TTCEEEEEEETT
T ss_pred CCeEEEEEecCC
Confidence 999999876443
No 142
>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*
Probab=99.39 E-value=5.5e-13 Score=122.88 Aligned_cols=129 Identities=15% Similarity=0.155 Sum_probs=93.7
Q ss_pred HHHHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChH
Q psy1420 29 RLWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNP 108 (241)
Q Consensus 29 ~~~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~ 108 (241)
......+++.+...++.+|||+|||+|..+ ..++. . .....++|+|+++.
T Consensus 159 ~~~i~~il~~l~l~~gd~VLDLGCGtG~l~-------------l~lA~----~-------------~g~~kVvGIDiS~~ 208 (438)
T 3uwp_A 159 FDLVAQMIDEIKMTDDDLFVDLGSGVGQVV-------------LQVAA----A-------------TNCKHHYGVEKADI 208 (438)
T ss_dssp HHHHHHHHHHHCCCTTCEEEEESCTTSHHH-------------HHHHH----H-------------CCCSEEEEEECCHH
T ss_pred HHHHHHHHHhcCCCCCCEEEEeCCCCCHHH-------------HHHHH----H-------------CCCCEEEEEeCCHH
Confidence 334566777788889999999999999988 44432 0 02335999999999
Q ss_pred hHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCC--CceeEEeeeehhhccccHHH
Q psy1420 109 RLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIES--DSYSAYTIAFGIRNVTRIDK 186 (241)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~--~~~D~V~~~~~l~~~~~~~~ 186 (241)
+++.|+++.... + .+....++..++++++++|+.++++.. +.+|+|+++..+ +.++...
T Consensus 209 ~lelAr~n~e~f----------------r--kr~~~~Gl~~~rVefi~GD~~~lp~~d~~~~aDVVf~Nn~~-F~pdl~~ 269 (438)
T 3uwp_A 209 PAKYAETMDREF----------------R--KWMKWYGKKHAEYTLERGDFLSEEWRERIANTSVIFVNNFA-FGPEVDH 269 (438)
T ss_dssp HHHHHHHHHHHH----------------H--HHHHHHTBCCCEEEEEECCTTSHHHHHHHHTCSEEEECCTT-CCHHHHH
T ss_pred HHHHHHHHHHHH----------------H--HHHHHhCCCCCCeEEEECcccCCccccccCCccEEEEcccc-cCchHHH
Confidence 999988754300 0 000023432247999999999987643 469999987665 4678889
Q ss_pred HHHHHHHhccCCcEEEEEec
Q psy1420 187 ALSEAYRVLKPGGRFLCLEF 206 (241)
Q Consensus 187 ~l~~~~~~LkpgG~l~i~~~ 206 (241)
.|.++++.|||||+|++.+.
T Consensus 270 aL~Ei~RvLKPGGrIVssE~ 289 (438)
T 3uwp_A 270 QLKERFANMKEGGRIVSSKP 289 (438)
T ss_dssp HHHHHHTTSCTTCEEEESSC
T ss_pred HHHHHHHcCCCCcEEEEeec
Confidence 99999999999999998753
No 143
>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...
Probab=99.38 E-value=8.3e-13 Score=110.78 Aligned_cols=127 Identities=10% Similarity=0.113 Sum_probs=93.5
Q ss_pred CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCC
Q psy1420 42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP 121 (241)
Q Consensus 42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~ 121 (241)
.++.+|||+|||+|..+ ..++. .+. ...+++++|+++.+++.+++++.
T Consensus 57 ~~~~~vLdiG~G~G~~~-------------~~la~----~~~------------~~~~v~~vD~~~~~~~~a~~~~~--- 104 (221)
T 3u81_A 57 YSPSLVLELGAYCGYSA-------------VRMAR----LLQ------------PGARLLTMEINPDCAAITQQMLN--- 104 (221)
T ss_dssp HCCSEEEEECCTTSHHH-------------HHHHT----TSC------------TTCEEEEEESCHHHHHHHHHHHH---
T ss_pred cCCCEEEEECCCCCHHH-------------HHHHH----hCC------------CCCEEEEEeCChHHHHHHHHHHH---
Confidence 46679999999999988 33333 110 35689999999999999999887
Q ss_pred CccccccccceecceeeeeeccccCCCCCCeeEEecccCC-CCCC-----CCceeEEeeeehhhccccHHHHHHHHHHhc
Q psy1420 122 IESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEE-LPIE-----SDSYSAYTIAFGIRNVTRIDKALSEAYRVL 195 (241)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~-----~~~~D~V~~~~~l~~~~~~~~~l~~~~~~L 195 (241)
..++. ++++++.+|+.+ ++.. .++||+|++....++..+....+..+ ++|
T Consensus 105 ----------------------~~~~~-~~v~~~~~d~~~~l~~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~-~~L 160 (221)
T 3u81_A 105 ----------------------FAGLQ-DKVTILNGASQDLIPQLKKKYDVDTLDMVFLDHWKDRYLPDTLLLEKC-GLL 160 (221)
T ss_dssp ----------------------HHTCG-GGEEEEESCHHHHGGGTTTTSCCCCCSEEEECSCGGGHHHHHHHHHHT-TCC
T ss_pred ----------------------HcCCC-CceEEEECCHHHHHHHHHHhcCCCceEEEEEcCCcccchHHHHHHHhc-ccc
Confidence 55554 468999999754 2321 26899999988777777777788888 999
Q ss_pred cCCcEEEEEecCH---HHHHHHHHHCC-CceEE
Q psy1420 196 KPGGRFLCLEFSH---EEFKSMIESAG-FQYVT 224 (241)
Q Consensus 196 kpgG~l~i~~~~~---~~~~~~l~~~G-f~~~~ 224 (241)
||||++++.+... .++.+.+++.. |....
T Consensus 161 kpgG~lv~~~~~~~~~~~~~~~l~~~~~~~~~~ 193 (221)
T 3u81_A 161 RKGTVLLADNVIVPGTPDFLAYVRGSSSFECTH 193 (221)
T ss_dssp CTTCEEEESCCCCCCCHHHHHHHHHCTTEEEEE
T ss_pred CCCeEEEEeCCCCcchHHHHHHHhhCCCceEEE
Confidence 9999998865433 56666666554 44433
No 144
>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A
Probab=99.37 E-value=1.1e-11 Score=104.03 Aligned_cols=140 Identities=16% Similarity=0.029 Sum_probs=98.2
Q ss_pred hcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHH
Q psy1420 38 RLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANA 117 (241)
Q Consensus 38 ~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~ 117 (241)
.+...++.+|||+|||+|..+ ..++..+| ....++++|+++.+++.+.+++
T Consensus 68 ~~~~~~~~~vLDlG~G~G~~~-------------~~la~~~~----------------~~~~v~~vD~s~~~~~~~~~~~ 118 (227)
T 1g8a_A 68 NFPIKPGKSVLYLGIASGTTA-------------SHVSDIVG----------------WEGKIFGIEFSPRVLRELVPIV 118 (227)
T ss_dssp CCCCCTTCEEEEETTTSTTHH-------------HHHHHHHC----------------TTSEEEEEESCHHHHHHHHHHH
T ss_pred hcCCCCCCEEEEEeccCCHHH-------------HHHHHHhC----------------CCeEEEEEECCHHHHHHHHHHH
Confidence 334678889999999999988 44443111 2357999999999999998887
Q ss_pred hcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCC---CCCCceeEEeeeehhhccccH-HHHHHHHHH
Q psy1420 118 EELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELP---IESDSYSAYTIAFGIRNVTRI-DKALSEAYR 193 (241)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~~D~V~~~~~l~~~~~~-~~~l~~~~~ 193 (241)
. .. +++.++.+|+.... ...++||+|++... .++. ..++.++.+
T Consensus 119 ~-------------------------~~----~~v~~~~~d~~~~~~~~~~~~~~D~v~~~~~---~~~~~~~~l~~~~~ 166 (227)
T 1g8a_A 119 E-------------------------ER----RNIVPILGDATKPEEYRALVPKVDVIFEDVA---QPTQAKILIDNAEV 166 (227)
T ss_dssp S-------------------------SC----TTEEEEECCTTCGGGGTTTCCCEEEEEECCC---STTHHHHHHHHHHH
T ss_pred h-------------------------cc----CCCEEEEccCCCcchhhcccCCceEEEECCC---CHhHHHHHHHHHHH
Confidence 6 22 36889999987732 12358999997654 2333 344999999
Q ss_pred hccCCcEEEEEecCH-------------HHHHHHHHHCCCceEEEEEec--CceeEEEeeec
Q psy1420 194 VLKPGGRFLCLEFSH-------------EEFKSMIESAGFQYVTYENLT--FGVVAIHSGFK 240 (241)
Q Consensus 194 ~LkpgG~l~i~~~~~-------------~~~~~~l~~~Gf~~~~~~~~~--~~~~~~~~~~~ 240 (241)
+|||||++++..... +++.++ +++ |++++..++. .....+++++|
T Consensus 167 ~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~l~~l-~~~-f~~~~~~~~~~~~~~~~~~~~~~ 226 (227)
T 1g8a_A 167 YLKRGGYGMIAVKSRSIDVTKEPEQVFREVEREL-SEY-FEVIERLNLEPYEKDHALFVVRK 226 (227)
T ss_dssp HEEEEEEEEEEEEGGGTCTTSCHHHHHHHHHHHH-HTT-SEEEEEEECTTTSSSEEEEEEEC
T ss_pred hcCCCCEEEEEEecCCCCCCCChhhhhHHHHHHH-Hhh-ceeeeEeccCcccCCCEEEEEEe
Confidence 999999998862111 456665 777 9998887763 22355566654
No 145
>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*
Probab=99.37 E-value=1e-12 Score=110.99 Aligned_cols=123 Identities=17% Similarity=0.109 Sum_probs=90.4
Q ss_pred CCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCC
Q psy1420 43 HDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPI 122 (241)
Q Consensus 43 ~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~ 122 (241)
++.+|||+|||+|..+ ..++. . .+...++|+|+++.+++.+++++.
T Consensus 34 ~~~~vLDiGcG~G~~~-------------~~lA~----~-------------~p~~~v~giD~s~~~l~~a~~~~~---- 79 (218)
T 3dxy_A 34 EAPVTLEIGFGMGASL-------------VAMAK----D-------------RPEQDFLGIEVHSPGVGACLASAH---- 79 (218)
T ss_dssp CCCEEEEESCTTCHHH-------------HHHHH----H-------------CTTSEEEEECSCHHHHHHHHHHHH----
T ss_pred CCCeEEEEeeeChHHH-------------HHHHH----H-------------CCCCeEEEEEecHHHHHHHHHHHH----
Confidence 5669999999999988 43333 1 134679999999999999999887
Q ss_pred ccccccccceecceeeeeeccccCCCCCCeeEEecccCCC-C--CCCCceeEEeeeehhhccccH--------HHHHHHH
Q psy1420 123 ESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL-P--IESDSYSAYTIAFGIRNVTRI--------DKALSEA 191 (241)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~--~~~~~~D~V~~~~~l~~~~~~--------~~~l~~~ 191 (241)
..++. +++++++|+..+ + ++++++|.|++.+...+.... ..+++++
T Consensus 80 ---------------------~~~l~--nv~~~~~Da~~~l~~~~~~~~~d~v~~~~~~p~~~~~~~~rr~~~~~~l~~~ 136 (218)
T 3dxy_A 80 ---------------------EEGLS--NLRVMCHDAVEVLHKMIPDNSLRMVQLFFPDPWHKARHNKRRIVQVPFAELV 136 (218)
T ss_dssp ---------------------HTTCS--SEEEECSCHHHHHHHHSCTTCEEEEEEESCCCCCSGGGGGGSSCSHHHHHHH
T ss_pred ---------------------HhCCC--cEEEEECCHHHHHHHHcCCCChheEEEeCCCCccchhhhhhhhhhHHHHHHH
Confidence 55554 699999998874 3 567899999987543322211 2599999
Q ss_pred HHhccCCcEEEEEecCH---HHHHHHHHHC-CCce
Q psy1420 192 YRVLKPGGRFLCLEFSH---EEFKSMIESA-GFQY 222 (241)
Q Consensus 192 ~~~LkpgG~l~i~~~~~---~~~~~~l~~~-Gf~~ 222 (241)
.++|||||++++.+-.. +.+.+.+.+. +|..
T Consensus 137 ~r~LkpGG~l~i~td~~~~~~~~~~~~~~~~~~~~ 171 (218)
T 3dxy_A 137 KSKLQLGGVFHMATDWEPYAEHMLEVMSSIDGYKN 171 (218)
T ss_dssp HHHEEEEEEEEEEESCHHHHHHHHHHHHTSTTEEE
T ss_pred HHHcCCCcEEEEEeCCHHHHHHHHHHHHhCCCccc
Confidence 99999999999987655 4455555544 4544
No 146
>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46
Probab=99.37 E-value=4.6e-13 Score=107.96 Aligned_cols=140 Identities=11% Similarity=0.104 Sum_probs=96.5
Q ss_pred HHHHHHhhcC-CCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHh
Q psy1420 31 WKDIFIDRLG-PTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPR 109 (241)
Q Consensus 31 ~~~~~~~~l~-~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~ 109 (241)
..+.+.+.+. ..++.+|||+|||+|..+ ..++. .....++++|+++.+
T Consensus 18 ~~~~~~~~l~~~~~~~~vLDlGcG~G~~~-------------~~l~~------------------~~~~~v~~vD~~~~~ 66 (177)
T 2esr_A 18 VRGAIFNMIGPYFNGGRVLDLFAGSGGLA-------------IEAVS------------------RGMSAAVLVEKNRKA 66 (177)
T ss_dssp CHHHHHHHHCSCCCSCEEEEETCTTCHHH-------------HHHHH------------------TTCCEEEEECCCHHH
T ss_pred HHHHHHHHHHhhcCCCeEEEeCCCCCHHH-------------HHHHH------------------cCCCEEEEEECCHHH
Confidence 3455555555 457789999999999988 43333 123579999999999
Q ss_pred HHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCC-CCCCCCceeEEeeeehhhccccHHHHH
Q psy1420 110 LRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEE-LPIESDSYSAYTIAFGIRNVTRIDKAL 188 (241)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~D~V~~~~~l~~~~~~~~~l 188 (241)
++.+++++. ..++. ++++++.+|+.+ ++...++||+|++....+ .......+
T Consensus 67 ~~~a~~~~~-------------------------~~~~~-~~~~~~~~d~~~~~~~~~~~fD~i~~~~~~~-~~~~~~~~ 119 (177)
T 2esr_A 67 QAIIQDNII-------------------------MTKAE-NRFTLLKMEAERAIDCLTGRFDLVFLDPPYA-KETIVATI 119 (177)
T ss_dssp HHHHHHHHH-------------------------TTTCG-GGEEEECSCHHHHHHHBCSCEEEEEECCSSH-HHHHHHHH
T ss_pred HHHHHHHHH-------------------------HcCCC-CceEEEECcHHHhHHhhcCCCCEEEECCCCC-cchHHHHH
Confidence 999999987 44443 468899999876 333346799999876543 23455667
Q ss_pred HHHH--HhccCCcEEEEEecCHHHHHHHHHHCCCceEEEEEecC
Q psy1420 189 SEAY--RVLKPGGRFLCLEFSHEEFKSMIESAGFQYVTYENLTF 230 (241)
Q Consensus 189 ~~~~--~~LkpgG~l~i~~~~~~~~~~~l~~~Gf~~~~~~~~~~ 230 (241)
+.+. ++|+|||++++.......+.+ ...+|...+......
T Consensus 120 ~~l~~~~~L~~gG~l~~~~~~~~~~~~--~~~~~~~~~~~~yg~ 161 (177)
T 2esr_A 120 EALAAKNLLSEQVMVVCETDKTVLLPK--EIATLGIWKEKIYGI 161 (177)
T ss_dssp HHHHHTTCEEEEEEEEEEEETTCCCCS--EETTEEEEEEEEETT
T ss_pred HHHHhCCCcCCCcEEEEEECCcccccc--ccCceEEEEeeecCc
Confidence 7776 999999999987655533222 224566655554433
No 147
>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38
Probab=99.35 E-value=3e-12 Score=113.83 Aligned_cols=136 Identities=14% Similarity=0.156 Sum_probs=100.8
Q ss_pred HHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHH
Q psy1420 35 FIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLE 114 (241)
Q Consensus 35 ~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~ 114 (241)
....+.+.++.+|||+|||+|..+ ..++..++ ....++++|+++.+++.++
T Consensus 110 ~~~~l~~~~g~~VLDlg~G~G~~t-------------~~la~~~~----------------~~~~v~avD~s~~~l~~a~ 160 (315)
T 1ixk_A 110 PPVALDPKPGEIVADMAAAPGGKT-------------SYLAQLMR----------------NDGVIYAFDVDENRLRETR 160 (315)
T ss_dssp HHHHHCCCTTCEEEECCSSCSHHH-------------HHHHHHTT----------------TCSEEEEECSCHHHHHHHH
T ss_pred HHHHhCCCCCCEEEEeCCCCCHHH-------------HHHHHHhC----------------CCCEEEEEcCCHHHHHHHH
Confidence 345567788899999999999988 44443111 2467999999999999999
Q ss_pred HHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeee------hhhcccc-----
Q psy1420 115 ANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAF------GIRNVTR----- 183 (241)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~------~l~~~~~----- 183 (241)
+++. +.++. ++.+++.|+..++...++||+|++.. .++..++
T Consensus 161 ~~~~-------------------------~~g~~--~v~~~~~D~~~~~~~~~~fD~Il~d~Pcsg~g~~~~~p~~~~~~ 213 (315)
T 1ixk_A 161 LNLS-------------------------RLGVL--NVILFHSSSLHIGELNVEFDKILLDAPCTGSGTIHKNPERKWNR 213 (315)
T ss_dssp HHHH-------------------------HHTCC--SEEEESSCGGGGGGGCCCEEEEEEECCTTSTTTCC--------C
T ss_pred HHHH-------------------------HhCCC--eEEEEECChhhcccccccCCEEEEeCCCCCcccccCChhHhhcC
Confidence 9988 55654 58899999888764456899999742 1222121
Q ss_pred -----------HHHHHHHHHHhccCCcEEEEEecCH------HHHHHHHHHCCCceEEEE
Q psy1420 184 -----------IDKALSEAYRVLKPGGRFLCLEFSH------EEFKSMIESAGFQYVTYE 226 (241)
Q Consensus 184 -----------~~~~l~~~~~~LkpgG~l~i~~~~~------~~~~~~l~~~Gf~~~~~~ 226 (241)
...+|+++.++|||||++++++.+. +.+..++++.||+.+.+.
T Consensus 214 ~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs~~~~Ene~~v~~~l~~~~~~~~~~~ 273 (315)
T 1ixk_A 214 TMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEPEENEFVIQWALDNFDVELLPLK 273 (315)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCGGGTHHHHHHHHHHSSEEEECCC
T ss_pred CHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCCCChHHhHHHHHHHHhcCCCEEecCC
Confidence 1588999999999999999876543 456778889998876553
No 148
>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}
Probab=99.35 E-value=9.6e-12 Score=105.08 Aligned_cols=129 Identities=12% Similarity=0.153 Sum_probs=97.7
Q ss_pred HHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHH
Q psy1420 33 DIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRF 112 (241)
Q Consensus 33 ~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~ 112 (241)
..+...+...++.+|||+|||+|..+ ..++. ...+++++|+++.+++.
T Consensus 81 ~~~~~~~~~~~~~~vldiG~G~G~~~-------------~~l~~-------------------~~~~v~~vD~~~~~~~~ 128 (248)
T 2yvl_A 81 FYIALKLNLNKEKRVLEFGTGSGALL-------------AVLSE-------------------VAGEVWTFEAVEEFYKT 128 (248)
T ss_dssp HHHHHHTTCCTTCEEEEECCTTSHHH-------------HHHHH-------------------HSSEEEEECSCHHHHHH
T ss_pred HHHHHhcCCCCCCEEEEeCCCccHHH-------------HHHHH-------------------hCCEEEEEecCHHHHHH
Confidence 34556667778889999999999988 44444 24579999999999999
Q ss_pred HHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHHHHH
Q psy1420 113 LEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAY 192 (241)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~~~ 192 (241)
++++.. ..++. +++++...|+.+...+.++||+|++ +.+++..+++++.
T Consensus 129 a~~~~~-------------------------~~~~~-~~~~~~~~d~~~~~~~~~~~D~v~~-----~~~~~~~~l~~~~ 177 (248)
T 2yvl_A 129 AQKNLK-------------------------KFNLG-KNVKFFNVDFKDAEVPEGIFHAAFV-----DVREPWHYLEKVH 177 (248)
T ss_dssp HHHHHH-------------------------HTTCC-TTEEEECSCTTTSCCCTTCBSEEEE-----CSSCGGGGHHHHH
T ss_pred HHHHHH-------------------------HcCCC-CcEEEEEcChhhcccCCCcccEEEE-----CCcCHHHHHHHHH
Confidence 999887 44543 4688899998875434568999997 4557778999999
Q ss_pred HhccCCcEEEEEecCHH---HHHHHHHHCCCceEEE
Q psy1420 193 RVLKPGGRFLCLEFSHE---EFKSMIESAGFQYVTY 225 (241)
Q Consensus 193 ~~LkpgG~l~i~~~~~~---~~~~~l~~~Gf~~~~~ 225 (241)
++|+|||++++.....+ ++.+.+++. |..++.
T Consensus 178 ~~L~~gG~l~~~~~~~~~~~~~~~~l~~~-f~~~~~ 212 (248)
T 2yvl_A 178 KSLMEGAPVGFLLPTANQVIKLLESIENY-FGNLEV 212 (248)
T ss_dssp HHBCTTCEEEEEESSHHHHHHHHHHSTTT-EEEEEE
T ss_pred HHcCCCCEEEEEeCCHHHHHHHHHHHHhh-CCcceE
Confidence 99999999999888664 444445555 654443
No 149
>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}
Probab=99.34 E-value=1.2e-11 Score=107.98 Aligned_cols=143 Identities=11% Similarity=0.050 Sum_probs=98.1
Q ss_pred HHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecC-ChHhHH
Q psy1420 33 DIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDI-PNPRLR 111 (241)
Q Consensus 33 ~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~-s~~~~~ 111 (241)
+.+.......++.+|||+|||+|..+ ..++. ....+++++|+ ++.+++
T Consensus 69 ~~l~~~~~~~~~~~vLDlG~G~G~~~-------------~~~a~------------------~~~~~v~~~D~s~~~~~~ 117 (281)
T 3bzb_A 69 DTLCWQPELIAGKTVCELGAGAGLVS-------------IVAFL------------------AGADQVVATDYPDPEILN 117 (281)
T ss_dssp HHHHHCGGGTTTCEEEETTCTTSHHH-------------HHHHH------------------TTCSEEEEEECSCHHHHH
T ss_pred HHHHhcchhcCCCeEEEecccccHHH-------------HHHHH------------------cCCCEEEEEeCCCHHHHH
Confidence 44444444456779999999999987 33322 01237999999 899999
Q ss_pred HHHHHHhcCCCccccccccceecceeeeeeccccCCC---CCCeeEEecccCCCC--C----CCCceeEEeeeehhhccc
Q psy1420 112 FLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIP---NPRLRFLEANAEELP--I----ESDSYSAYTIAFGIRNVT 182 (241)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~d~~~~~--~----~~~~~D~V~~~~~l~~~~ 182 (241)
.+++++...-. ...++. .+++++...+..... . +.++||+|+++.++++.+
T Consensus 118 ~a~~n~~~N~~--------------------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~dvl~~~~ 177 (281)
T 3bzb_A 118 SLESNIREHTA--------------------NSCSSETVKRASPKVVPYRWGDSPDSLQRCTGLQRFQVVLLADLLSFHQ 177 (281)
T ss_dssp HHHHHHHTTCC------------------------------CCCEEEECCTTSCTHHHHHHHSCSSBSEEEEESCCSCGG
T ss_pred HHHHHHHHhhh--------------------hhcccccCCCCCeEEEEecCCCccHHHHhhccCCCCCEEEEeCcccChH
Confidence 99998830000 011111 024666655543321 1 346899999999999999
Q ss_pred cHHHHHHHHHHhcc---C--CcEEEEEecC--------HHHHHHHHHHCC-CceEEEE
Q psy1420 183 RIDKALSEAYRVLK---P--GGRFLCLEFS--------HEEFKSMIESAG-FQYVTYE 226 (241)
Q Consensus 183 ~~~~~l~~~~~~Lk---p--gG~l~i~~~~--------~~~~~~~l~~~G-f~~~~~~ 226 (241)
+...+++.+.++|+ | ||+++++-.. ...+.+.++++| |.+.++.
T Consensus 178 ~~~~ll~~l~~~Lk~~~p~~gG~l~v~~~~~~~~~~~~~~~~~~~l~~~G~f~v~~~~ 235 (281)
T 3bzb_A 178 AHDALLRSVKMLLALPANDPTAVALVTFTHHRPHLAERDLAFFRLVNADGALIAEPWL 235 (281)
T ss_dssp GHHHHHHHHHHHBCCTTTCTTCEEEEEECC--------CTHHHHHHHHSTTEEEEEEE
T ss_pred HHHHHHHHHHHHhcccCCCCCCEEEEEEEeeecccchhHHHHHHHHHhcCCEEEEEec
Confidence 99999999999999 9 9987664322 256777889999 9988773
No 150
>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*
Probab=99.34 E-value=6.2e-12 Score=111.27 Aligned_cols=134 Identities=16% Similarity=0.245 Sum_probs=96.0
Q ss_pred CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCC
Q psy1420 42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP 121 (241)
Q Consensus 42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~ 121 (241)
.++.+|||+|||+|..+ ..++. . ....+++++|+++.+++.+++.+..+
T Consensus 94 ~~~~~VLdiG~G~G~~~-------------~~l~~--------~---------~~~~~v~~vDid~~~i~~a~~~~~~~- 142 (304)
T 3bwc_A 94 PKPERVLIIGGGDGGVL-------------REVLR--------H---------GTVEHCDLVDIDGEVMEQSKQHFPQI- 142 (304)
T ss_dssp SSCCEEEEEECTTSHHH-------------HHHHT--------C---------TTCCEEEEEESCHHHHHHHHHHCHHH-
T ss_pred CCCCeEEEEcCCCCHHH-------------HHHHh--------C---------CCCCEEEEEECCHHHHHHHHHHhHHh-
Confidence 45679999999999988 44433 0 02468999999999999999876300
Q ss_pred CccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCC--CCCceeEEeeeehhhccccH----HHHHHHHHHhc
Q psy1420 122 IESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPI--ESDSYSAYTIAFGIRNVTRI----DKALSEAYRVL 195 (241)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~~D~V~~~~~l~~~~~~----~~~l~~~~~~L 195 (241)
..+...++++++.+|+...+. +.++||+|++.......+.. ..+++++.++|
T Consensus 143 ----------------------~~~~~~~~v~~~~~D~~~~~~~~~~~~fDvIi~d~~~~~~~~~~l~~~~~l~~~~~~L 200 (304)
T 3bwc_A 143 ----------------------SRSLADPRATVRVGDGLAFVRQTPDNTYDVVIIDTTDPAGPASKLFGEAFYKDVLRIL 200 (304)
T ss_dssp ----------------------HGGGGCTTEEEEESCHHHHHHSSCTTCEEEEEEECC---------CCHHHHHHHHHHE
T ss_pred ----------------------hcccCCCcEEEEECcHHHHHHhccCCceeEEEECCCCccccchhhhHHHHHHHHHHhc
Confidence 001112478999999876543 36789999987655443322 68999999999
Q ss_pred cCCcEEEEEecCH-------HHHHHHHHHCCCceEEEEEe
Q psy1420 196 KPGGRFLCLEFSH-------EEFKSMIESAGFQYVTYENL 228 (241)
Q Consensus 196 kpgG~l~i~~~~~-------~~~~~~l~~~Gf~~~~~~~~ 228 (241)
||||++++...+. +.+.+.++++||..+.....
T Consensus 201 kpgG~lv~~~~~~~~~~~~~~~~~~~l~~~GF~~v~~~~~ 240 (304)
T 3bwc_A 201 KPDGICCNQGESIWLDLELIEKMSRFIRETGFASVQYALM 240 (304)
T ss_dssp EEEEEEEEEECCTTTCHHHHHHHHHHHHHHTCSEEEEEEC
T ss_pred CCCcEEEEecCCcccchHHHHHHHHHHHhCCCCcEEEEEe
Confidence 9999999865442 77888999999998877654
No 151
>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*
Probab=99.33 E-value=1.5e-11 Score=111.70 Aligned_cols=141 Identities=16% Similarity=0.168 Sum_probs=108.8
Q ss_pred HHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHH
Q psy1420 32 KDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLR 111 (241)
Q Consensus 32 ~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~ 111 (241)
...+.... +.++.+|||+|||+|..+ ..++. . .....++|+|+++.+++
T Consensus 207 a~~l~~~~-~~~~~~vLD~gCGsG~~~-------------i~~a~----~-------------~~~~~v~g~Dis~~~l~ 255 (373)
T 3tm4_A 207 ANAMIELA-ELDGGSVLDPMCGSGTIL-------------IELAL----R-------------RYSGEIIGIEKYRKHLI 255 (373)
T ss_dssp HHHHHHHH-TCCSCCEEETTCTTCHHH-------------HHHHH----T-------------TCCSCEEEEESCHHHHH
T ss_pred HHHHHHhh-cCCCCEEEEccCcCcHHH-------------HHHHH----h-------------CCCCeEEEEeCCHHHHH
Confidence 34455555 678889999999999988 44443 0 01237999999999999
Q ss_pred HHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhc-------ccc-
Q psy1420 112 FLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRN-------VTR- 183 (241)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~-------~~~- 183 (241)
.+++++. ..++. +++++.++|+..++.+.++||+|+++-.... ..+
T Consensus 256 ~A~~n~~-------------------------~~gl~-~~i~~~~~D~~~~~~~~~~fD~Ii~npPyg~r~~~~~~~~~l 309 (373)
T 3tm4_A 256 GAEMNAL-------------------------AAGVL-DKIKFIQGDATQLSQYVDSVDFAISNLPYGLKIGKKSMIPDL 309 (373)
T ss_dssp HHHHHHH-------------------------HTTCG-GGCEEEECCGGGGGGTCSCEEEEEEECCCC------CCHHHH
T ss_pred HHHHHHH-------------------------HcCCC-CceEEEECChhhCCcccCCcCEEEECCCCCcccCcchhHHHH
Confidence 9999988 55654 4689999999998877789999999643221 222
Q ss_pred HHHHHHHHHHhccCCcEEEEEecCHHHHHHHHHHCCCceEEEEEecCc
Q psy1420 184 IDKALSEAYRVLKPGGRFLCLEFSHEEFKSMIESAGFQYVTYENLTFG 231 (241)
Q Consensus 184 ~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~l~~~Gf~~~~~~~~~~~ 231 (241)
...+++++.++| +|.++++..+.+.+++.+.+.||+..+...+..|
T Consensus 310 y~~~~~~l~r~l--~g~~~~i~~~~~~~~~~~~~~G~~~~~~~~~~nG 355 (373)
T 3tm4_A 310 YMKFFNELAKVL--EKRGVFITTEKKAIEEAIAENGFEIIHHRVIGHG 355 (373)
T ss_dssp HHHHHHHHHHHE--EEEEEEEESCHHHHHHHHHHTTEEEEEEEEEEET
T ss_pred HHHHHHHHHHHc--CCeEEEEECCHHHHHHHHHHcCCEEEEEEEEEcC
Confidence 267888999988 7777777888899999999999999888777543
No 152
>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33
Probab=99.33 E-value=8.6e-12 Score=107.05 Aligned_cols=119 Identities=18% Similarity=0.233 Sum_probs=89.5
Q ss_pred CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCC
Q psy1420 42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP 121 (241)
Q Consensus 42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~ 121 (241)
.++.+|||+|||+|..+ ..++. .+ ....++++|+++.+++.++++..
T Consensus 84 ~~~~~vLdiG~G~G~~~-------------~~l~~----~~-------------~~~~v~~vD~s~~~~~~a~~~~~--- 130 (269)
T 1p91_A 84 DKATAVLDIGCGEGYYT-------------HAFAD----AL-------------PEITTFGLDVSKVAIKAAAKRYP--- 130 (269)
T ss_dssp TTCCEEEEETCTTSTTH-------------HHHHH----TC-------------TTSEEEEEESCHHHHHHHHHHCT---
T ss_pred CCCCEEEEECCCCCHHH-------------HHHHH----hC-------------CCCeEEEEeCCHHHHHHHHHhCC---
Confidence 56789999999999988 44443 10 14579999999999999887643
Q ss_pred CccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHHHHHHhccCCcEE
Q psy1420 122 IESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRF 201 (241)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l 201 (241)
++.+...|+..++.++++||+|++.... ..++++.++|||||++
T Consensus 131 -----------------------------~~~~~~~d~~~~~~~~~~fD~v~~~~~~-------~~l~~~~~~L~pgG~l 174 (269)
T 1p91_A 131 -----------------------------QVTFCVASSHRLPFSDTSMDAIIRIYAP-------CKAEELARVVKPGGWV 174 (269)
T ss_dssp -----------------------------TSEEEECCTTSCSBCTTCEEEEEEESCC-------CCHHHHHHHEEEEEEE
T ss_pred -----------------------------CcEEEEcchhhCCCCCCceeEEEEeCCh-------hhHHHHHHhcCCCcEE
Confidence 4778899998888877899999986553 3589999999999999
Q ss_pred EEEecCHHHHHH---------------HHHHCCCceEEEEEec
Q psy1420 202 LCLEFSHEEFKS---------------MIESAGFQYVTYENLT 229 (241)
Q Consensus 202 ~i~~~~~~~~~~---------------~l~~~Gf~~~~~~~~~ 229 (241)
++.+.....+.+ .+..+||++++.+.+.
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gf~~~~~~~~~ 217 (269)
T 1p91_A 175 ITATPGPRHLMELKGLIYNEVHLHAPHAEQLEGFTLQQSAELC 217 (269)
T ss_dssp EEEEECTTTTHHHHTTTCSSCCCCCCCCCCCTTEEEEEEEEEE
T ss_pred EEEEcCHHHHHHHHHHhhcccccccchhhHhcCCcEEEEEEEE
Confidence 998866533222 2235677777666554
No 153
>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54
Probab=99.32 E-value=1.2e-12 Score=111.86 Aligned_cols=133 Identities=11% Similarity=0.114 Sum_probs=87.1
Q ss_pred CCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCC
Q psy1420 43 HDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPI 122 (241)
Q Consensus 43 ~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~ 122 (241)
++.+|||+|||+|..+ ..++. .. ...+++++|+++.+++.+++++.
T Consensus 65 ~~~~vLDlG~G~G~~~-------------~~la~----~~-------------~~~~v~gvD~s~~~~~~a~~~~~---- 110 (254)
T 2h00_A 65 TLRRGIDIGTGASCIY-------------PLLGA----TL-------------NGWYFLATEVDDMCFNYAKKNVE---- 110 (254)
T ss_dssp CCCEEEEESCTTTTHH-------------HHHHH----HH-------------HCCEEEEEESCHHHHHHHHHHHH----
T ss_pred CCCEEEEeCCChhHHH-------------HHHHH----hC-------------CCCeEEEEECCHHHHHHHHHHHH----
Confidence 5679999999999987 33332 10 24689999999999999999987
Q ss_pred ccccccccceecceeeeeeccccCCCCCCeeEEecccCCC---CCCC---CceeEEeeeehhhccc--------------
Q psy1420 123 ESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL---PIES---DSYSAYTIAFGIRNVT-------------- 182 (241)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~~---~~~D~V~~~~~l~~~~-------------- 182 (241)
..++. .+++++++|+... +++. ++||+|+++-..+...
T Consensus 111 ---------------------~~~~~-~~v~~~~~d~~~~~~~~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~ 168 (254)
T 2h00_A 111 ---------------------QNNLS-DLIKVVKVPQKTLLMDALKEESEIIYDFCMCNPPFFANQLEAKGVNSRNPRRP 168 (254)
T ss_dssp ---------------------HTTCT-TTEEEEECCTTCSSTTTSTTCCSCCBSEEEECCCCC-----------------
T ss_pred ---------------------HcCCC-ccEEEEEcchhhhhhhhhhcccCCcccEEEECCCCccCcchhccccccccccc
Confidence 55554 4689999987652 3332 5899999973332211
Q ss_pred -cHHHHHHHH--------------------HHhccCCcEEEEEec--CH-HHHHHHHHHCCCceEEEEEecCc
Q psy1420 183 -RIDKALSEA--------------------YRVLKPGGRFLCLEF--SH-EEFKSMIESAGFQYVTYENLTFG 231 (241)
Q Consensus 183 -~~~~~l~~~--------------------~~~LkpgG~l~i~~~--~~-~~~~~~l~~~Gf~~~~~~~~~~~ 231 (241)
....++.++ .+.++++|.+.+..- .. +++.++++++||..++......|
T Consensus 169 ~~~~~l~~~~~~~LkpgG~l~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~Gf~~v~~~~~~~g 241 (254)
T 2h00_A 169 PPSSVNTGGITEIMAEGGELEFVKRIIHDSLQLKKRLRWYSCMLGKKCSLAPLKEELRIQGVPKVTYTEFCQG 241 (254)
T ss_dssp --------CTTTTHHHHTHHHHHHHHHHHHHHHGGGBSCEEEEESSTTSHHHHHHHHHHTTCSEEEEEEEEET
T ss_pred CCHHHHhhhHHHHEecCCEEEEEHHHHHHHHhcccceEEEEECCCChhHHHHHHHHHHHcCCCceEEEEEecC
Confidence 011223333 345555555543221 11 68889999999999988887655
No 154
>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}
Probab=99.32 E-value=1.5e-11 Score=105.23 Aligned_cols=129 Identities=16% Similarity=0.146 Sum_probs=101.2
Q ss_pred CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCC
Q psy1420 42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP 121 (241)
Q Consensus 42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~ 121 (241)
+++.+|+|+|||+|..+ ..++. . .+..+++++|+++.+++.|++++.
T Consensus 20 ~~g~~VlDIGtGsG~l~-------------i~la~--------~---------~~~~~V~AvDi~~~al~~A~~N~~--- 66 (230)
T 3lec_A 20 PKGARLLDVGSDHAYLP-------------IFLLQ--------M---------GYCDFAIAGEVVNGPYQSALKNVS--- 66 (230)
T ss_dssp CTTEEEEEETCSTTHHH-------------HHHHH--------T---------TCEEEEEEEESSHHHHHHHHHHHH---
T ss_pred CCCCEEEEECCchHHHH-------------HHHHH--------h---------CCCCEEEEEECCHHHHHHHHHHHH---
Confidence 46789999999999988 33332 0 024579999999999999999998
Q ss_pred CccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHHHHHHhccCCcEE
Q psy1420 122 IESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRF 201 (241)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l 201 (241)
..++. +++++..+|..+...+.++||+|+++.... .-....+....+.|+++|+|
T Consensus 67 ----------------------~~gl~-~~I~~~~gD~l~~~~~~~~~D~IviaGmGg--~lI~~IL~~~~~~l~~~~~l 121 (230)
T 3lec_A 67 ----------------------EHGLT-SKIDVRLANGLSAFEEADNIDTITICGMGG--RLIADILNNDIDKLQHVKTL 121 (230)
T ss_dssp ----------------------HTTCT-TTEEEEECSGGGGCCGGGCCCEEEEEEECH--HHHHHHHHHTGGGGTTCCEE
T ss_pred ----------------------HcCCC-CcEEEEECchhhccccccccCEEEEeCCch--HHHHHHHHHHHHHhCcCCEE
Confidence 66765 579999999887654444799988654332 33567888889999999999
Q ss_pred EEEecCH-HHHHHHHHHCCCceEEEEEe
Q psy1420 202 LCLEFSH-EEFKSMIESAGFQYVTYENL 228 (241)
Q Consensus 202 ~i~~~~~-~~~~~~l~~~Gf~~~~~~~~ 228 (241)
++..... +.+++++.+.||.+++..-.
T Consensus 122 Ilqp~~~~~~lr~~L~~~Gf~i~~E~lv 149 (230)
T 3lec_A 122 VLQPNNREDDLRKWLAANDFEIVAEDIL 149 (230)
T ss_dssp EEEESSCHHHHHHHHHHTTEEEEEEEEE
T ss_pred EEECCCChHHHHHHHHHCCCEEEEEEEE
Confidence 9876544 89999999999998887744
No 155
>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A
Probab=99.32 E-value=8.3e-12 Score=112.31 Aligned_cols=114 Identities=15% Similarity=0.189 Sum_probs=89.0
Q ss_pred HHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhH
Q psy1420 31 WKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRL 110 (241)
Q Consensus 31 ~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~ 110 (241)
+.+.+.+.+...++.+|||+|||+|..+ ..++. ....+++++|+++ ++
T Consensus 38 y~~~i~~~l~~~~~~~VLDiGcGtG~ls-------------~~la~------------------~g~~~V~~vD~s~-~~ 85 (348)
T 2y1w_A 38 YQRAILQNHTDFKDKIVLDVGCGSGILS-------------FFAAQ------------------AGARKIYAVEAST-MA 85 (348)
T ss_dssp HHHHHHHTGGGTTTCEEEEETCTTSHHH-------------HHHHH------------------TTCSEEEEEECST-HH
T ss_pred HHHHHHhccccCCcCEEEEcCCCccHHH-------------HHHHh------------------CCCCEEEEECCHH-HH
Confidence 4566667666678889999999999988 33333 1245899999996 88
Q ss_pred HHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhcc--ccHHHHH
Q psy1420 111 RFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNV--TRIDKAL 188 (241)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~--~~~~~~l 188 (241)
+.+++++. ..++. ++++++.+|+.+.+.+ ++||+|++....+++ +.....+
T Consensus 86 ~~a~~~~~-------------------------~~~l~-~~v~~~~~d~~~~~~~-~~~D~Ivs~~~~~~~~~~~~~~~l 138 (348)
T 2y1w_A 86 QHAEVLVK-------------------------SNNLT-DRIVVIPGKVEEVSLP-EQVDIIISEPMGYMLFNERMLESY 138 (348)
T ss_dssp HHHHHHHH-------------------------HTTCT-TTEEEEESCTTTCCCS-SCEEEEEECCCBTTBTTTSHHHHH
T ss_pred HHHHHHHH-------------------------HcCCC-CcEEEEEcchhhCCCC-CceeEEEEeCchhcCChHHHHHHH
Confidence 88888877 55554 5799999999987654 679999998776655 3456888
Q ss_pred HHHHHhccCCcEEEE
Q psy1420 189 SEAYRVLKPGGRFLC 203 (241)
Q Consensus 189 ~~~~~~LkpgG~l~i 203 (241)
..+.++|||||++++
T Consensus 139 ~~~~~~LkpgG~li~ 153 (348)
T 2y1w_A 139 LHAKKYLKPSGNMFP 153 (348)
T ss_dssp HHGGGGEEEEEEEES
T ss_pred HHHHhhcCCCeEEEE
Confidence 899999999999984
No 156
>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6
Probab=99.32 E-value=2e-12 Score=115.45 Aligned_cols=114 Identities=15% Similarity=0.188 Sum_probs=87.7
Q ss_pred HHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhH
Q psy1420 31 WKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRL 110 (241)
Q Consensus 31 ~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~ 110 (241)
+.+.+.+.....++.+|||+|||+|.++ ..++. ....+++++|++ .++
T Consensus 26 y~~ai~~~~~~~~~~~VLDiGcGtG~ls-------------~~la~------------------~g~~~v~~vD~s-~~~ 73 (328)
T 1g6q_1 26 YRNAIIQNKDLFKDKIVLDVGCGTGILS-------------MFAAK------------------HGAKHVIGVDMS-SII 73 (328)
T ss_dssp HHHHHHHHHHHHTTCEEEEETCTTSHHH-------------HHHHH------------------TCCSEEEEEESS-THH
T ss_pred HHHHHHhhHhhcCCCEEEEecCccHHHH-------------HHHHH------------------CCCCEEEEEChH-HHH
Confidence 3444544444456789999999999987 33333 123479999999 589
Q ss_pred HHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeee---hhhccccHHHH
Q psy1420 111 RFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAF---GIRNVTRIDKA 187 (241)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~---~l~~~~~~~~~ 187 (241)
+.+++++. ..++. ++++++.+|+.+.+.+.++||+|++.. .+.+...+..+
T Consensus 74 ~~a~~~~~-------------------------~~~~~-~~i~~~~~d~~~~~~~~~~~D~Ivs~~~~~~l~~~~~~~~~ 127 (328)
T 1g6q_1 74 EMAKELVE-------------------------LNGFS-DKITLLRGKLEDVHLPFPKVDIIISEWMGYFLLYESMMDTV 127 (328)
T ss_dssp HHHHHHHH-------------------------HTTCT-TTEEEEESCTTTSCCSSSCEEEEEECCCBTTBSTTCCHHHH
T ss_pred HHHHHHHH-------------------------HcCCC-CCEEEEECchhhccCCCCcccEEEEeCchhhcccHHHHHHH
Confidence 99988887 55554 579999999999887778999999874 34455678899
Q ss_pred HHHHHHhccCCcEEE
Q psy1420 188 LSEAYRVLKPGGRFL 202 (241)
Q Consensus 188 l~~~~~~LkpgG~l~ 202 (241)
+..+.++|||||+++
T Consensus 128 l~~~~~~LkpgG~li 142 (328)
T 1g6q_1 128 LYARDHYLVEGGLIF 142 (328)
T ss_dssp HHHHHHHEEEEEEEE
T ss_pred HHHHHhhcCCCeEEE
Confidence 999999999999987
No 157
>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7
Probab=99.32 E-value=7.7e-12 Score=104.86 Aligned_cols=110 Identities=13% Similarity=0.146 Sum_probs=86.9
Q ss_pred HHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhH
Q psy1420 31 WKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRL 110 (241)
Q Consensus 31 ~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~ 110 (241)
..+.+.+.+...++.+|||+|||+|..+ ..++. ....++++|+++.++
T Consensus 58 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~-------------~~l~~-------------------~~~~v~~vD~~~~~~ 105 (231)
T 1vbf_A 58 LGIFMLDELDLHKGQKVLEIGTGIGYYT-------------ALIAE-------------------IVDKVVSVEINEKMY 105 (231)
T ss_dssp HHHHHHHHTTCCTTCEEEEECCTTSHHH-------------HHHHH-------------------HSSEEEEEESCHHHH
T ss_pred HHHHHHHhcCCCCCCEEEEEcCCCCHHH-------------HHHHH-------------------HcCEEEEEeCCHHHH
Confidence 4456777777788899999999999988 44444 236799999999999
Q ss_pred HHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHHH
Q psy1420 111 RFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSE 190 (241)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~ 190 (241)
+.++++.. ..+ ++++..+|+.......++||+|++..+++++. .+
T Consensus 106 ~~a~~~~~-------------------------~~~----~v~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~------~~ 150 (231)
T 1vbf_A 106 NYASKLLS-------------------------YYN----NIKLILGDGTLGYEEEKPYDRVVVWATAPTLL------CK 150 (231)
T ss_dssp HHHHHHHT-------------------------TCS----SEEEEESCGGGCCGGGCCEEEEEESSBBSSCC------HH
T ss_pred HHHHHHHh-------------------------hcC----CeEEEECCcccccccCCCccEEEECCcHHHHH------HH
Confidence 99998876 222 58889999877322356899999999998876 36
Q ss_pred HHHhccCCcEEEEEecC
Q psy1420 191 AYRVLKPGGRFLCLEFS 207 (241)
Q Consensus 191 ~~~~LkpgG~l~i~~~~ 207 (241)
+.++|+|||++++....
T Consensus 151 ~~~~L~pgG~l~~~~~~ 167 (231)
T 1vbf_A 151 PYEQLKEGGIMILPIGV 167 (231)
T ss_dssp HHHTEEEEEEEEEEECS
T ss_pred HHHHcCCCcEEEEEEcC
Confidence 88999999999987643
No 158
>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}
Probab=99.32 E-value=5.9e-12 Score=104.45 Aligned_cols=114 Identities=14% Similarity=0.087 Sum_probs=87.3
Q ss_pred HHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhH
Q psy1420 31 WKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRL 110 (241)
Q Consensus 31 ~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~ 110 (241)
....+.+.+...++.+|||+|||+|..+ ..++...+ ...+++++|+++.++
T Consensus 65 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~-------------~~l~~~~~----------------~~~~v~~vD~~~~~~ 115 (215)
T 2yxe_A 65 MVGMMCELLDLKPGMKVLEIGTGCGYHA-------------AVTAEIVG----------------EDGLVVSIERIPELA 115 (215)
T ss_dssp HHHHHHHHTTCCTTCEEEEECCTTSHHH-------------HHHHHHHC----------------TTSEEEEEESCHHHH
T ss_pred HHHHHHHhhCCCCCCEEEEECCCccHHH-------------HHHHHHhC----------------CCCEEEEEeCCHHHH
Confidence 3456677777788899999999999988 44443110 236799999999999
Q ss_pred HHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHHH
Q psy1420 111 RFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSE 190 (241)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~ 190 (241)
+.++++.. ..++. ++.+...|+.......++||+|++..++++++ ++
T Consensus 116 ~~a~~~~~-------------------------~~~~~--~v~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~------~~ 162 (215)
T 2yxe_A 116 EKAERTLR-------------------------KLGYD--NVIVIVGDGTLGYEPLAPYDRIYTTAAGPKIP------EP 162 (215)
T ss_dssp HHHHHHHH-------------------------HHTCT--TEEEEESCGGGCCGGGCCEEEEEESSBBSSCC------HH
T ss_pred HHHHHHHH-------------------------HcCCC--CeEEEECCcccCCCCCCCeeEEEECCchHHHH------HH
Confidence 99998876 44444 58888888754322256899999999998876 47
Q ss_pred HHHhccCCcEEEEEec
Q psy1420 191 AYRVLKPGGRFLCLEF 206 (241)
Q Consensus 191 ~~~~LkpgG~l~i~~~ 206 (241)
+.++|||||++++...
T Consensus 163 ~~~~L~pgG~lv~~~~ 178 (215)
T 2yxe_A 163 LIRQLKDGGKLLMPVG 178 (215)
T ss_dssp HHHTEEEEEEEEEEES
T ss_pred HHHHcCCCcEEEEEEC
Confidence 8999999999998754
No 159
>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}
Probab=99.31 E-value=9.2e-12 Score=106.29 Aligned_cols=131 Identities=18% Similarity=0.196 Sum_probs=89.1
Q ss_pred CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCC
Q psy1420 42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP 121 (241)
Q Consensus 42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~ 121 (241)
.++.+|||+|||+|..+ ..++. . . +...++|+|+++.+++.+++++..+
T Consensus 45 ~~~~~vLDiGcG~G~~~-------------~~la~----~---~----------p~~~v~GiDis~~~l~~A~~~~~~l- 93 (235)
T 3ckk_A 45 QAQVEFADIGCGYGGLL-------------VELSP----L---F----------PDTLILGLEIRVKVSDYVQDRIRAL- 93 (235)
T ss_dssp -CCEEEEEETCTTCHHH-------------HHHGG----G---S----------TTSEEEEEESCHHHHHHHHHHHHHH-
T ss_pred CCCCeEEEEccCCcHHH-------------HHHHH----H---C----------CCCeEEEEECCHHHHHHHHHHHHHH-
Confidence 45678999999999988 44333 1 0 2467999999999999998776410
Q ss_pred CccccccccceecceeeeeeccccCCCCCCeeEEecccCC-CC--CCCCceeEEeeeehhhcccc--------HHHHHHH
Q psy1420 122 IESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEE-LP--IESDSYSAYTIAFGIRNVTR--------IDKALSE 190 (241)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~--~~~~~~D~V~~~~~l~~~~~--------~~~~l~~ 190 (241)
......+. .+++++++|+.. ++ ++.+++|.|++.+.-.+... ...++++
T Consensus 94 ------------------~~~~~~~~--~nv~~~~~d~~~~l~~~~~~~~~D~v~~~~~dp~~k~~h~krr~~~~~~l~~ 153 (235)
T 3ckk_A 94 ------------------RAAPAGGF--QNIACLRSNAMKHLPNFFYKGQLTKMFFLFPDPHFKRTKHKWRIISPTLLAE 153 (235)
T ss_dssp ------------------HHSTTCCC--TTEEEEECCTTTCHHHHCCTTCEEEEEEESCC-----------CCCHHHHHH
T ss_pred ------------------HHHHhcCC--CeEEEEECcHHHhhhhhCCCcCeeEEEEeCCCchhhhhhhhhhhhhHHHHHH
Confidence 00001122 369999999886 55 56789999987653322110 1479999
Q ss_pred HHHhccCCcEEEEEecCH---HHHHHHHHHCC-CceE
Q psy1420 191 AYRVLKPGGRFLCLEFSH---EEFKSMIESAG-FQYV 223 (241)
Q Consensus 191 ~~~~LkpgG~l~i~~~~~---~~~~~~l~~~G-f~~~ 223 (241)
+.++|||||.|++.+-.. ..+.+.+.+.| |..+
T Consensus 154 ~~~~LkpGG~l~~~td~~~~~~~~~~~l~~~~~f~~~ 190 (235)
T 3ckk_A 154 YAYVLRVGGLVYTITDVLELHDWMCTHFEEHPLFERV 190 (235)
T ss_dssp HHHHEEEEEEEEEEESCHHHHHHHHHHHHTSTTEEEE
T ss_pred HHHHCCCCCEEEEEeCCHHHHHHHHHHHHHCCCcccc
Confidence 999999999999876555 45566667776 5443
No 160
>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46
Probab=99.31 E-value=2e-12 Score=107.39 Aligned_cols=109 Identities=12% Similarity=0.192 Sum_probs=82.9
Q ss_pred CCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCC
Q psy1420 43 HDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPI 122 (241)
Q Consensus 43 ~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~ 122 (241)
++.+|||+|||+|..+ ..++. .....++++|+++.+++.+++++.
T Consensus 53 ~~~~vLDlGcGtG~~~-------------~~~~~------------------~~~~~v~gvD~s~~~l~~a~~~~~---- 97 (201)
T 2ift_A 53 HQSECLDGFAGSGSLG-------------FEALS------------------RQAKKVTFLELDKTVANQLKKNLQ---- 97 (201)
T ss_dssp TTCEEEETTCTTCHHH-------------HHHHH------------------TTCSEEEEECSCHHHHHHHHHHHH----
T ss_pred CCCeEEEcCCccCHHH-------------HHHHH------------------ccCCEEEEEECCHHHHHHHHHHHH----
Confidence 5679999999999988 33222 023579999999999999999987
Q ss_pred ccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCC--CCCc-eeEEeeeehhhccccHHHHHHHH--HHhccC
Q psy1420 123 ESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPI--ESDS-YSAYTIAFGIRNVTRIDKALSEA--YRVLKP 197 (241)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~-~D~V~~~~~l~~~~~~~~~l~~~--~~~Lkp 197 (241)
..++..++++++++|+.+... +.++ ||+|++...++ ..+....++.+ .++|+|
T Consensus 98 ---------------------~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~~~~-~~~~~~~l~~~~~~~~Lkp 155 (201)
T 2ift_A 98 ---------------------TLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFLDPPFH-FNLAEQAISLLCENNWLKP 155 (201)
T ss_dssp ---------------------HTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEECCCSS-SCHHHHHHHHHHHTTCEEE
T ss_pred ---------------------HhCCCccceEEEECCHHHHHHhhccCCCCCEEEECCCCC-CccHHHHHHHHHhcCccCC
Confidence 555421368999999876432 3568 99999887754 56677888888 678999
Q ss_pred CcEEEEEecCH
Q psy1420 198 GGRFLCLEFSH 208 (241)
Q Consensus 198 gG~l~i~~~~~ 208 (241)
||.+++.....
T Consensus 156 gG~l~i~~~~~ 166 (201)
T 2ift_A 156 NALIYVETEKD 166 (201)
T ss_dssp EEEEEEEEESS
T ss_pred CcEEEEEECCC
Confidence 99998876544
No 161
>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13
Probab=99.31 E-value=9.6e-12 Score=110.88 Aligned_cols=135 Identities=11% Similarity=0.214 Sum_probs=89.8
Q ss_pred HHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHH
Q psy1420 32 KDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLR 111 (241)
Q Consensus 32 ~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~ 111 (241)
...++..+...++.+|||+|||+|..+ ..++..+| ....++++|+++.+++
T Consensus 94 ~~~~l~~l~~~~g~~VLDiG~G~G~~~-------------~~la~~~g----------------~~~~v~~vD~~~~~~~ 144 (336)
T 2b25_A 94 INMILSMMDINPGDTVLEAGSGSGGMS-------------LFLSKAVG----------------SQGRVISFEVRKDHHD 144 (336)
T ss_dssp HHHHHHHHTCCTTCEEEEECCTTSHHH-------------HHHHHHHC----------------TTCEEEEEESSHHHHH
T ss_pred HHHHHHhcCCCCCCEEEEeCCCcCHHH-------------HHHHHHhC----------------CCceEEEEeCCHHHHH
Confidence 345566667788999999999999988 44443111 2368999999999999
Q ss_pred HHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCC--CCCCCceeEEeeeehhhccccHHHHHH
Q psy1420 112 FLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL--PIESDSYSAYTIAFGIRNVTRIDKALS 189 (241)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~D~V~~~~~l~~~~~~~~~l~ 189 (241)
.+++++..+-. ...+.+ -.+.. .++++..+|+.+. +++.++||+|++. .+++..++.
T Consensus 145 ~a~~~~~~~~~----------~~~ln~-----~~~~~-~~v~~~~~d~~~~~~~~~~~~fD~V~~~-----~~~~~~~l~ 203 (336)
T 2b25_A 145 LAKKNYKHWRD----------SWKLSH-----VEEWP-DNVDFIHKDISGATEDIKSLTFDAVALD-----MLNPHVTLP 203 (336)
T ss_dssp HHHHHHHHHHH----------HHTTTC-----SSCCC-CCEEEEESCTTCCC-------EEEEEEC-----SSSTTTTHH
T ss_pred HHHHHHHHhhc----------cccccc-----ccccC-CceEEEECChHHcccccCCCCeeEEEEC-----CCCHHHHHH
Confidence 99988761000 000000 00011 3689999998876 4455689999974 345556899
Q ss_pred HHHHhccCCcEEEEEecCHHHHHHHHH
Q psy1420 190 EAYRVLKPGGRFLCLEFSHEEFKSMIE 216 (241)
Q Consensus 190 ~~~~~LkpgG~l~i~~~~~~~~~~~l~ 216 (241)
++.++|+|||++++.......+.+.++
T Consensus 204 ~~~~~LkpgG~lv~~~~~~~~~~~~~~ 230 (336)
T 2b25_A 204 VFYPHLKHGGVCAVYVVNITQVIELLD 230 (336)
T ss_dssp HHGGGEEEEEEEEEEESSHHHHHHHHH
T ss_pred HHHHhcCCCcEEEEEeCCHHHHHHHHH
Confidence 999999999999998887755554444
No 162
>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}
Probab=99.31 E-value=1.2e-11 Score=106.83 Aligned_cols=136 Identities=11% Similarity=0.144 Sum_probs=97.2
Q ss_pred HhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHH
Q psy1420 36 IDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEA 115 (241)
Q Consensus 36 ~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~ 115 (241)
...+...++.+|||+|||+|..+ ..++. . .....++++|+++.+++.+++
T Consensus 29 ~~~~~~~~~~~VLDlG~G~G~~~-------------l~la~----~-------------~~~~~v~gvDi~~~~~~~a~~ 78 (260)
T 2ozv_A 29 ASLVADDRACRIADLGAGAGAAG-------------MAVAA----R-------------LEKAEVTLYERSQEMAEFARR 78 (260)
T ss_dssp HHTCCCCSCEEEEECCSSSSHHH-------------HHHHH----H-------------CTTEEEEEEESSHHHHHHHHH
T ss_pred HHHhcccCCCEEEEeCChHhHHH-------------HHHHH----h-------------CCCCeEEEEECCHHHHHHHHH
Confidence 34455567889999999999988 33332 0 024579999999999999999
Q ss_pred HHhcCCCccccccccceecceeeeeeccc---cCCCCCCeeEEecccCCC-------CCCCCceeEEeeeehhhc-----
Q psy1420 116 NAEELPIESDSYSAYTIAFGIRNVTRIDK---IDIPNPRLRFLEANAEEL-------PIESDSYSAYTIAFGIRN----- 180 (241)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~d~~~~-------~~~~~~~D~V~~~~~l~~----- 180 (241)
++. . .++. ++++++++|+.+. +++.++||+|+++-....
T Consensus 79 n~~-------------------------~~~~~~l~-~~v~~~~~D~~~~~~~~~~~~~~~~~fD~Vv~nPPy~~~~~~~ 132 (260)
T 2ozv_A 79 SLE-------------------------LPDNAAFS-ARIEVLEADVTLRAKARVEAGLPDEHFHHVIMNPPYNDAGDRR 132 (260)
T ss_dssp HTT-------------------------SGGGTTTG-GGEEEEECCTTCCHHHHHHTTCCTTCEEEEEECCCC-------
T ss_pred HHH-------------------------hhhhCCCc-ceEEEEeCCHHHHhhhhhhhccCCCCcCEEEECCCCcCCCCCC
Confidence 987 4 4443 4689999999876 245678999999732211
Q ss_pred -------------cccHHHHHHHHHHhccCCcEEEEEecCH--HHHHHHHHHCCCceEEEEEe
Q psy1420 181 -------------VTRIDKALSEAYRVLKPGGRFLCLEFSH--EEFKSMIESAGFQYVTYENL 228 (241)
Q Consensus 181 -------------~~~~~~~l~~~~~~LkpgG~l~i~~~~~--~~~~~~l~~~Gf~~~~~~~~ 228 (241)
......+++.+.++|||||++++..... .++.+.+++. |...++...
T Consensus 133 ~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~l~~~-~~~~~i~~v 194 (260)
T 2ozv_A 133 TPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLISRPQSVAEIIAACGSR-FGGLEITLI 194 (260)
T ss_dssp --------------CCHHHHHHHHHHHEEEEEEEEEEECGGGHHHHHHHHTTT-EEEEEEEEE
T ss_pred CcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEEcHHHHHHHHHHHHhc-CCceEEEEE
Confidence 1246789999999999999998864333 5566677664 766655543
No 163
>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1
Probab=99.31 E-value=6.4e-12 Score=111.43 Aligned_cols=115 Identities=17% Similarity=0.283 Sum_probs=90.1
Q ss_pred HHHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHh
Q psy1420 30 LWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPR 109 (241)
Q Consensus 30 ~~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~ 109 (241)
...+.+++.+..+++.+|||+|||+|..+ ..++. ... ...+++++|+++.+
T Consensus 62 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~~-------------~~la~----~~~------------~~~~v~gvD~s~~~ 112 (317)
T 1dl5_A 62 SLMALFMEWVGLDKGMRVLEIGGGTGYNA-------------AVMSR----VVG------------EKGLVVSVEYSRKI 112 (317)
T ss_dssp HHHHHHHHHTTCCTTCEEEEECCTTSHHH-------------HHHHH----HHC------------TTCEEEEEESCHHH
T ss_pred HHHHHHHHhcCCCCcCEEEEecCCchHHH-------------HHHHH----hcC------------CCCEEEEEECCHHH
Confidence 34566777778888999999999999988 44443 100 13469999999999
Q ss_pred HHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHH
Q psy1420 110 LRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALS 189 (241)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~ 189 (241)
++.+++++. ..++. ++++..+|+...+.+.++||+|++...++++. +
T Consensus 113 ~~~a~~~~~-------------------------~~g~~--~v~~~~~d~~~~~~~~~~fD~Iv~~~~~~~~~------~ 159 (317)
T 1dl5_A 113 CEIAKRNVE-------------------------RLGIE--NVIFVCGDGYYGVPEFSPYDVIFVTVGVDEVP------E 159 (317)
T ss_dssp HHHHHHHHH-------------------------HTTCC--SEEEEESCGGGCCGGGCCEEEEEECSBBSCCC------H
T ss_pred HHHHHHHHH-------------------------HcCCC--CeEEEECChhhccccCCCeEEEEEcCCHHHHH------H
Confidence 999999887 55554 58899999887544457899999999998876 5
Q ss_pred HHHHhccCCcEEEEEec
Q psy1420 190 EAYRVLKPGGRFLCLEF 206 (241)
Q Consensus 190 ~~~~~LkpgG~l~i~~~ 206 (241)
.+.+.|||||++++...
T Consensus 160 ~~~~~LkpgG~lvi~~~ 176 (317)
T 1dl5_A 160 TWFTQLKEGGRVIVPIN 176 (317)
T ss_dssp HHHHHEEEEEEEEEEBC
T ss_pred HHHHhcCCCcEEEEEEC
Confidence 68889999999998643
No 164
>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*
Probab=99.30 E-value=2.5e-11 Score=103.49 Aligned_cols=128 Identities=19% Similarity=0.177 Sum_probs=98.6
Q ss_pred CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCC
Q psy1420 42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP 121 (241)
Q Consensus 42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~ 121 (241)
+++.+|+|+|||+|..+ ..++. . .+..+++++|+++.+++.|++++.
T Consensus 14 ~~g~~VlDIGtGsG~l~-------------i~la~--------~---------~~~~~V~avDi~~~al~~A~~N~~--- 60 (225)
T 3kr9_A 14 SQGAILLDVGSDHAYLP-------------IELVE--------R---------GQIKSAIAGEVVEGPYQSAVKNVE--- 60 (225)
T ss_dssp CTTEEEEEETCSTTHHH-------------HHHHH--------T---------TSEEEEEEEESSHHHHHHHHHHHH---
T ss_pred CCCCEEEEeCCCcHHHH-------------HHHHH--------h---------CCCCEEEEEECCHHHHHHHHHHHH---
Confidence 46779999999999988 33332 0 024579999999999999999998
Q ss_pred CccccccccceecceeeeeeccccCCCCCCeeEEecccCC-CCCCCCceeEEeeeehhhccccHHHHHHHHHHhccCCcE
Q psy1420 122 IESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEE-LPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGR 200 (241)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~ 200 (241)
..++. +++++..+|..+ ++. .++||+|+.+..-. .-...++....+.|+|+|+
T Consensus 61 ----------------------~~gl~-~~i~~~~~d~l~~l~~-~~~~D~IviaG~Gg--~~i~~Il~~~~~~L~~~~~ 114 (225)
T 3kr9_A 61 ----------------------AHGLK-EKIQVRLANGLAAFEE-TDQVSVITIAGMGG--RLIARILEEGLGKLANVER 114 (225)
T ss_dssp ----------------------HTTCT-TTEEEEECSGGGGCCG-GGCCCEEEEEEECH--HHHHHHHHHTGGGCTTCCE
T ss_pred ----------------------HcCCC-ceEEEEECchhhhccc-CcCCCEEEEcCCCh--HHHHHHHHHHHHHhCCCCE
Confidence 67776 579999999854 332 23699988754322 2356889999999999999
Q ss_pred EEEEecCH-HHHHHHHHHCCCceEEEEEe
Q psy1420 201 FLCLEFSH-EEFKSMIESAGFQYVTYENL 228 (241)
Q Consensus 201 l~i~~~~~-~~~~~~l~~~Gf~~~~~~~~ 228 (241)
+++..... ..+++++.+.||.+++..-.
T Consensus 115 lVlq~~~~~~~vr~~L~~~Gf~i~~e~lv 143 (225)
T 3kr9_A 115 LILQPNNREDDLRIWLQDHGFQIVAESIL 143 (225)
T ss_dssp EEEEESSCHHHHHHHHHHTTEEEEEEEEE
T ss_pred EEEECCCCHHHHHHHHHHCCCEEEEEEEE
Confidence 98865543 89999999999998877643
No 165
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}
Probab=99.29 E-value=9.6e-12 Score=122.64 Aligned_cols=125 Identities=10% Similarity=0.034 Sum_probs=93.5
Q ss_pred HHHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHh
Q psy1420 30 LWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPR 109 (241)
Q Consensus 30 ~~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~ 109 (241)
.+.+.+.+.+...++.+|||+|||+|..+ ..++. ... ...+++|+|+++.+
T Consensus 708 qRle~LLelL~~~~g~rVLDVGCGTG~la-------------i~LAr--------~g~--------p~a~VtGVDIS~em 758 (950)
T 3htx_A 708 QRVEYALKHIRESSASTLVDFGCGSGSLL-------------DSLLD--------YPT--------SLQTIIGVDISPKG 758 (950)
T ss_dssp HHHHHHHHHHHHSCCSEEEEETCSSSHHH-------------HHHTS--------SCC--------CCCEEEEEESCHHH
T ss_pred HHHHHHHHHhcccCCCEEEEECCCCCHHH-------------HHHHH--------hCC--------CCCeEEEEECCHHH
Confidence 34455566665567889999999999988 43333 100 13689999999999
Q ss_pred HHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHH--HH
Q psy1420 110 LRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRID--KA 187 (241)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~--~~ 187 (241)
++.+++++.... ...+.+. .++++.++|+..++.+.++||+|++..+++|++++. .+
T Consensus 759 Le~AReRLa~~l-------------------nAkr~gl--~nVefiqGDa~dLp~~d~sFDlVV~~eVLeHL~dp~l~~~ 817 (950)
T 3htx_A 759 LARAAKMLHVKL-------------------NKEACNV--KSATLYDGSILEFDSRLHDVDIGTCLEVIEHMEEDQACEF 817 (950)
T ss_dssp HHHHHHHHHHHT-------------------TTTCSSC--SEEEEEESCTTSCCTTSCSCCEEEEESCGGGSCHHHHHHH
T ss_pred HHHHHHHhhhcc-------------------chhhcCC--CceEEEECchHhCCcccCCeeEEEEeCchhhCChHHHHHH
Confidence 999988654100 0001122 378999999999988888999999999999998866 59
Q ss_pred HHHHHHhccCCcEEEEEe
Q psy1420 188 LSEAYRVLKPGGRFLCLE 205 (241)
Q Consensus 188 l~~~~~~LkpgG~l~i~~ 205 (241)
++++.++|||| .+++.+
T Consensus 818 L~eI~RvLKPG-~LIIST 834 (950)
T 3htx_A 818 GEKVLSLFHPK-LLIVST 834 (950)
T ss_dssp HHHHHHTTCCS-EEEEEE
T ss_pred HHHHHHHcCCC-EEEEEe
Confidence 99999999999 776654
No 166
>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}
Probab=99.29 E-value=9.4e-12 Score=105.35 Aligned_cols=111 Identities=14% Similarity=0.169 Sum_probs=84.7
Q ss_pred HHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHH
Q psy1420 35 FIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLE 114 (241)
Q Consensus 35 ~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~ 114 (241)
+...+...++.+|||+|||+|..+ ..++. . ....+++++|+++.+++.++
T Consensus 63 l~~~~~~~~~~~vLDiG~G~G~~~-------------~~la~----~-------------~~~~~v~~vD~~~~~~~~a~ 112 (232)
T 3ntv_A 63 IKQLIRMNNVKNILEIGTAIGYSS-------------MQFAS----I-------------SDDIHVTTIERNETMIQYAK 112 (232)
T ss_dssp HHHHHHHHTCCEEEEECCSSSHHH-------------HHHHT----T-------------CTTCEEEEEECCHHHHHHHH
T ss_pred HHHHHhhcCCCEEEEEeCchhHHH-------------HHHHH----h-------------CCCCEEEEEECCHHHHHHHH
Confidence 333333456779999999999988 33332 0 02568999999999999999
Q ss_pred HHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCC-C-CCCCceeEEeeeehhhccccHHHHHHHHH
Q psy1420 115 ANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL-P-IESDSYSAYTIAFGIRNVTRIDKALSEAY 192 (241)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~-~~~~~~D~V~~~~~l~~~~~~~~~l~~~~ 192 (241)
+++. ..++. ++++++.+|+.+. + ...++||+|++... ......+++.+.
T Consensus 113 ~~~~-------------------------~~~~~-~~v~~~~~d~~~~~~~~~~~~fD~V~~~~~---~~~~~~~l~~~~ 163 (232)
T 3ntv_A 113 QNLA-------------------------TYHFE-NQVRIIEGNALEQFENVNDKVYDMIFIDAA---KAQSKKFFEIYT 163 (232)
T ss_dssp HHHH-------------------------HTTCT-TTEEEEESCGGGCHHHHTTSCEEEEEEETT---SSSHHHHHHHHG
T ss_pred HHHH-------------------------HcCCC-CcEEEEECCHHHHHHhhccCCccEEEEcCc---HHHHHHHHHHHH
Confidence 9987 55654 5799999998764 3 23578999997643 456778999999
Q ss_pred HhccCCcEEEEE
Q psy1420 193 RVLKPGGRFLCL 204 (241)
Q Consensus 193 ~~LkpgG~l~i~ 204 (241)
++|||||++++-
T Consensus 164 ~~LkpgG~lv~d 175 (232)
T 3ntv_A 164 PLLKHQGLVITD 175 (232)
T ss_dssp GGEEEEEEEEEE
T ss_pred HhcCCCeEEEEe
Confidence 999999999883
No 167
>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}
Probab=99.29 E-value=1.5e-11 Score=112.17 Aligned_cols=129 Identities=15% Similarity=0.153 Sum_probs=93.7
Q ss_pred HHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHH
Q psy1420 32 KDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLR 111 (241)
Q Consensus 32 ~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~ 111 (241)
.+.+++.+...++.+|||+|||+|.++ ..++. . .+..+++++|+++.+++
T Consensus 211 ~~~ll~~l~~~~~~~VLDlGcG~G~~s-------------~~la~----~-------------~p~~~V~gvD~s~~al~ 260 (375)
T 4dcm_A 211 ARFFMQHLPENLEGEIVDLGCGNGVIG-------------LTLLD----K-------------NPQAKVVFVDESPMAVA 260 (375)
T ss_dssp HHHHHHTCCCSCCSEEEEETCTTCHHH-------------HHHHH----H-------------CTTCEEEEEESCHHHHH
T ss_pred HHHHHHhCcccCCCeEEEEeCcchHHH-------------HHHHH----H-------------CCCCEEEEEECcHHHHH
Confidence 456778888777789999999999988 44433 0 02568999999999999
Q ss_pred HHHHHHhcCCCccccccccceecceeeeeeccccCCCC-CCeeEEecccCCCCCCCCceeEEeeeehhhcccc-----HH
Q psy1420 112 FLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPN-PRLRFLEANAEELPIESDSYSAYTIAFGIRNVTR-----ID 185 (241)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~-----~~ 185 (241)
.+++++. ..++.. .++++...|+.. +.+.++||+|+++..+++... ..
T Consensus 261 ~Ar~n~~-------------------------~ngl~~~~~v~~~~~D~~~-~~~~~~fD~Ii~nppfh~~~~~~~~~~~ 314 (375)
T 4dcm_A 261 SSRLNVE-------------------------TNMPEALDRCEFMINNALS-GVEPFRFNAVLCNPPFHQQHALTDNVAW 314 (375)
T ss_dssp HHHHHHH-------------------------HHCGGGGGGEEEEECSTTT-TCCTTCEEEEEECCCC-------CCHHH
T ss_pred HHHHHHH-------------------------HcCCCcCceEEEEechhhc-cCCCCCeeEEEECCCcccCcccCHHHHH
Confidence 9999887 333321 147788999877 455678999999888775322 24
Q ss_pred HHHHHHHHhccCCcEEEEEecCHHHHHHHHH
Q psy1420 186 KALSEAYRVLKPGGRFLCLEFSHEEFKSMIE 216 (241)
Q Consensus 186 ~~l~~~~~~LkpgG~l~i~~~~~~~~~~~l~ 216 (241)
++++++.++|||||+++++..........++
T Consensus 315 ~~l~~~~~~LkpgG~l~iv~n~~~~~~~~l~ 345 (375)
T 4dcm_A 315 EMFHHARRCLKINGELYIVANRHLDYFHKLK 345 (375)
T ss_dssp HHHHHHHHHEEEEEEEEEEEETTSCHHHHHH
T ss_pred HHHHHHHHhCCCCcEEEEEEECCcCHHHHHH
Confidence 7899999999999999997765533333443
No 168
>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*
Probab=99.29 E-value=5.8e-12 Score=110.34 Aligned_cols=137 Identities=13% Similarity=0.110 Sum_probs=84.4
Q ss_pred CCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCC
Q psy1420 43 HDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPI 122 (241)
Q Consensus 43 ~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~ 122 (241)
++.+|+|+|||||..+ ..++-.+.+.+...+ ...+++|+|+|+.+++.|++.+.....
T Consensus 105 ~~~rIld~GCgTGee~-------------ysiAi~L~e~~~~~~---------~~~~I~atDis~~~L~~Ar~~~y~~~~ 162 (274)
T 1af7_A 105 GEYRVWSAAASTGEEP-------------YSIAITLADALGMAP---------GRWKVFASDIDTEVLEKARSGIYRLSE 162 (274)
T ss_dssp SCEEEEESCCTTTHHH-------------HHHHHHHHHHHCSCT---------TSEEEEEEESCHHHHHHHHHTEEEGGG
T ss_pred CCcEEEEeeccCChhH-------------HHHHHHHHHhcccCC---------CCeEEEEEECCHHHHHHHHhcCCchhh
Confidence 4579999999999865 222221111111110 124799999999999999987531000
Q ss_pred ccc-cccc-cceecc-e---eeeeeccccCCCCCCeeEEecccCCCCCC-CCceeEEeeeehhhccccH--HHHHHHHHH
Q psy1420 123 ESD-SYSA-YTIAFG-I---RNVTRIDKIDIPNPRLRFLEANAEELPIE-SDSYSAYTIAFGIRNVTRI--DKALSEAYR 193 (241)
Q Consensus 123 ~~~-~~~~-~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~D~V~~~~~l~~~~~~--~~~l~~~~~ 193 (241)
..+ +..+ ..+... . .+.... +..+. .++.|.+.|+.+.|++ .++||+|+|.+++.++++. .++++++++
T Consensus 163 ~~~~~~~~~~~~f~~~~~~~~~~~~v-~~~lr-~~V~F~~~dl~~~~~~~~~~fDlI~crnvliyf~~~~~~~vl~~~~~ 240 (274)
T 1af7_A 163 LKTLSPQQLQRYFMRGTGPHEGLVRV-RQELA-NYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVP 240 (274)
T ss_dssp GTTSCHHHHHHHEEECCTTSCSEEEE-CHHHH-TTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGG
T ss_pred hhcCCHHHHHHHhhccccCCCCceee-chhhc-ccCeEEecccCCCCCCcCCCeeEEEECCchHhCCHHHHHHHHHHHHH
Confidence 000 0000 000000 0 000000 00111 3689999999886654 5689999999999988766 799999999
Q ss_pred hccCCcEEEE
Q psy1420 194 VLKPGGRFLC 203 (241)
Q Consensus 194 ~LkpgG~l~i 203 (241)
.|+|||+|++
T Consensus 241 ~L~pgG~L~l 250 (274)
T 1af7_A 241 LLKPDGLLFA 250 (274)
T ss_dssp GEEEEEEEEE
T ss_pred HhCCCcEEEE
Confidence 9999999987
No 169
>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}
Probab=99.28 E-value=1e-11 Score=103.45 Aligned_cols=127 Identities=16% Similarity=0.227 Sum_probs=92.4
Q ss_pred CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCC
Q psy1420 42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP 121 (241)
Q Consensus 42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~ 121 (241)
.+..+|||+|||+|.++ ..+.. . .+..++.++|+++.|++.+++++.
T Consensus 48 ~~~~~VLDlGCG~GplA-------------l~l~~-------~----------~p~a~~~A~Di~~~~leiar~~~~--- 94 (200)
T 3fzg_A 48 KHVSSILDFGCGFNPLA-------------LYQWN-------E----------NEKIIYHAYDIDRAEIAFLSSIIG--- 94 (200)
T ss_dssp CCCSEEEEETCTTHHHH-------------HHHHC-------S----------SCCCEEEEECSCHHHHHHHHHHHH---
T ss_pred CCCCeEEEecCCCCHHH-------------HHHHh-------c----------CCCCEEEEEeCCHHHHHHHHHHHH---
Confidence 44679999999999998 33322 1 135699999999999999999998
Q ss_pred CccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHHHHHHhccCCcEE
Q psy1420 122 IESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRF 201 (241)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l 201 (241)
..+.. .++++ .|.... .+.++||+|+...++|++.+.+..+..+.+.|+|||.+
T Consensus 95 ----------------------~~g~~-~~v~~--~d~~~~-~~~~~~DvVLa~k~LHlL~~~~~al~~v~~~L~pggvf 148 (200)
T 3fzg_A 95 ----------------------KLKTT-IKYRF--LNKESD-VYKGTYDVVFLLKMLPVLKQQDVNILDFLQLFHTQNFV 148 (200)
T ss_dssp ----------------------HSCCS-SEEEE--ECCHHH-HTTSEEEEEEEETCHHHHHHTTCCHHHHHHTCEEEEEE
T ss_pred ----------------------hcCCC-ccEEE--eccccc-CCCCCcChhhHhhHHHhhhhhHHHHHHHHHHhCCCCEE
Confidence 55554 24555 454433 34678999999999999988888888999999999998
Q ss_pred EEEecCH-------------HHHHHHHHHCCCceEEEEEe
Q psy1420 202 LCLEFSH-------------EEFKSMIESAGFQYVTYENL 228 (241)
Q Consensus 202 ~i~~~~~-------------~~~~~~l~~~Gf~~~~~~~~ 228 (241)
+-..... ..|++.+ ...+.+++...+
T Consensus 149 ISfptksl~Gr~~gm~~~Y~~~~~~~~-~~~~~~~~~~~~ 187 (200)
T 3fzg_A 149 ISFPIKSLSGKEKGMEENYQLWFESFT-KGWIKILDSKVI 187 (200)
T ss_dssp EEEECCCCC--CTTCCCCHHHHHHHHT-TTTSCEEEEEEE
T ss_pred EEeChHHhcCCCcchhhhHHHHHHHhc-cCcceeeeeeee
Confidence 7655111 6666666 444544444444
No 170
>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}
Probab=99.28 E-value=3.4e-11 Score=103.11 Aligned_cols=109 Identities=12% Similarity=0.061 Sum_probs=83.4
Q ss_pred CCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcC
Q psy1420 41 PTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEEL 120 (241)
Q Consensus 41 ~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~ 120 (241)
..++.+|||+|||+|..+ ..++. .+ + ...+++++|+++.+++.+++++.
T Consensus 61 ~~~~~~VLdiG~G~G~~~-------------~~la~----~~---~---------~~~~v~~vD~s~~~~~~a~~~~~-- 109 (248)
T 3tfw_A 61 LTQAKRILEIGTLGGYST-------------IWMAR----EL---P---------ADGQLLTLEADAHHAQVARENLQ-- 109 (248)
T ss_dssp HHTCSEEEEECCTTSHHH-------------HHHHT----TS---C---------TTCEEEEEECCHHHHHHHHHHHH--
T ss_pred hcCCCEEEEecCCchHHH-------------HHHHH----hC---C---------CCCEEEEEECCHHHHHHHHHHHH--
Confidence 356779999999999988 43333 11 0 25689999999999999999988
Q ss_pred CCccccccccceecceeeeeeccccCCCCCCeeEEecccCC-CCCC--CCceeEEeeeehhhccccHHHHHHHHHHhccC
Q psy1420 121 PIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEE-LPIE--SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKP 197 (241)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~--~~~~D~V~~~~~l~~~~~~~~~l~~~~~~Lkp 197 (241)
+.++. ++++++.+|+.+ ++.. .++||+|++.. ...+....++++.++|||
T Consensus 110 -----------------------~~g~~-~~v~~~~~d~~~~l~~~~~~~~fD~V~~d~---~~~~~~~~l~~~~~~Lkp 162 (248)
T 3tfw_A 110 -----------------------LAGVD-QRVTLREGPALQSLESLGECPAFDLIFIDA---DKPNNPHYLRWALRYSRP 162 (248)
T ss_dssp -----------------------HTTCT-TTEEEEESCHHHHHHTCCSCCCCSEEEECS---CGGGHHHHHHHHHHTCCT
T ss_pred -----------------------HcCCC-CcEEEEEcCHHHHHHhcCCCCCeEEEEECC---chHHHHHHHHHHHHhcCC
Confidence 56665 579999999866 3322 34899999854 345667899999999999
Q ss_pred CcEEEEEecC
Q psy1420 198 GGRFLCLEFS 207 (241)
Q Consensus 198 gG~l~i~~~~ 207 (241)
||++++.+..
T Consensus 163 GG~lv~~~~~ 172 (248)
T 3tfw_A 163 GTLIIGDNVV 172 (248)
T ss_dssp TCEEEEECCS
T ss_pred CeEEEEeCCC
Confidence 9999886543
No 171
>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}
Probab=99.28 E-value=3e-11 Score=104.14 Aligned_cols=129 Identities=12% Similarity=0.086 Sum_probs=99.7
Q ss_pred CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCC
Q psy1420 42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP 121 (241)
Q Consensus 42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~ 121 (241)
+++.+|||+|||+|..+ ..++. . .+...++++|+++.+++.|++++.
T Consensus 20 ~~g~~VlDIGtGsG~l~-------------i~la~--------~---------~~~~~V~avDi~~~al~~A~~N~~--- 66 (244)
T 3gnl_A 20 TKNERIADIGSDHAYLP-------------CFAVK--------N---------QTASFAIAGEVVDGPFQSAQKQVR--- 66 (244)
T ss_dssp CSSEEEEEETCSTTHHH-------------HHHHH--------T---------TSEEEEEEEESSHHHHHHHHHHHH---
T ss_pred CCCCEEEEECCccHHHH-------------HHHHH--------h---------CCCCEEEEEECCHHHHHHHHHHHH---
Confidence 46789999999999988 33332 0 024579999999999999999998
Q ss_pred CccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHHHHHHhccCCcEE
Q psy1420 122 IESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRF 201 (241)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l 201 (241)
..++. +++++..+|..+...+.++||+|+++.... .-....+....+.|+++|+|
T Consensus 67 ----------------------~~gl~-~~I~v~~gD~l~~~~~~~~~D~IviagmGg--~lI~~IL~~~~~~L~~~~~l 121 (244)
T 3gnl_A 67 ----------------------SSGLT-EQIDVRKGNGLAVIEKKDAIDTIVIAGMGG--TLIRTILEEGAAKLAGVTKL 121 (244)
T ss_dssp ----------------------HTTCT-TTEEEEECSGGGGCCGGGCCCEEEEEEECH--HHHHHHHHHTGGGGTTCCEE
T ss_pred ----------------------HcCCC-ceEEEEecchhhccCccccccEEEEeCCch--HHHHHHHHHHHHHhCCCCEE
Confidence 66765 579999999887654334699988654322 23567888899999999999
Q ss_pred EEEecCH-HHHHHHHHHCCCceEEEEEe
Q psy1420 202 LCLEFSH-EEFKSMIESAGFQYVTYENL 228 (241)
Q Consensus 202 ~i~~~~~-~~~~~~l~~~Gf~~~~~~~~ 228 (241)
++..... ..+++++.+.||.+++..-.
T Consensus 122 Ilq~~~~~~~lr~~L~~~Gf~i~~E~lv 149 (244)
T 3gnl_A 122 ILQPNIAAWQLREWSEQNNWLITSEAIL 149 (244)
T ss_dssp EEEESSCHHHHHHHHHHHTEEEEEEEEE
T ss_pred EEEcCCChHHHHHHHHHCCCEEEEEEEE
Confidence 9876544 89999999999998766643
No 172
>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*
Probab=99.27 E-value=9.5e-12 Score=98.48 Aligned_cols=118 Identities=17% Similarity=0.184 Sum_probs=87.3
Q ss_pred CCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcC
Q psy1420 41 PTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEEL 120 (241)
Q Consensus 41 ~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~ 120 (241)
.+++.+|||+|||+|..+ ..++..++ ...+++++|+++ +++.
T Consensus 20 ~~~~~~vLd~G~G~G~~~-------------~~l~~~~~----------------~~~~v~~~D~~~-~~~~-------- 61 (180)
T 1ej0_A 20 FKPGMTVVDLGAAPGGWS-------------QYVVTQIG----------------GKGRIIACDLLP-MDPI-------- 61 (180)
T ss_dssp CCTTCEEEEESCTTCHHH-------------HHHHHHHC----------------TTCEEEEEESSC-CCCC--------
T ss_pred CCCCCeEEEeCCCCCHHH-------------HHHHHHhC----------------CCCeEEEEECcc-cccc--------
Confidence 567889999999999988 44433110 246899999988 6421
Q ss_pred CCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCC--------CCCCceeEEeeeehhhccccH--------
Q psy1420 121 PIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELP--------IESDSYSAYTIAFGIRNVTRI-------- 184 (241)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--------~~~~~~D~V~~~~~l~~~~~~-------- 184 (241)
.++++...|+...+ .+.++||+|++...+++....
T Consensus 62 -----------------------------~~~~~~~~d~~~~~~~~~~~~~~~~~~~D~i~~~~~~~~~~~~~~~~~~~~ 112 (180)
T 1ej0_A 62 -----------------------------VGVDFLQGDFRDELVMKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAM 112 (180)
T ss_dssp -----------------------------TTEEEEESCTTSHHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHH
T ss_pred -----------------------------CcEEEEEcccccchhhhhhhccCCCCceeEEEECCCccccCCCccchHHHH
Confidence 25778888988765 566789999998877765554
Q ss_pred ---HHHHHHHHHhccCCcEEEEEecCH---HHHHHHHHHCCCceEEEE
Q psy1420 185 ---DKALSEAYRVLKPGGRFLCLEFSH---EEFKSMIESAGFQYVTYE 226 (241)
Q Consensus 185 ---~~~l~~~~~~LkpgG~l~i~~~~~---~~~~~~l~~~Gf~~~~~~ 226 (241)
..+++++.++|+|||.+++..+.. ..+.+.+++. |..++..
T Consensus 113 ~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 159 (180)
T 1ej0_A 113 YLVELALEMCRDVLAPGGSFVVKVFQGEGFDEYLREIRSL-FTKVKVR 159 (180)
T ss_dssp HHHHHHHHHHHHHEEEEEEEEEEEESSTTHHHHHHHHHHH-EEEEEEE
T ss_pred HHHHHHHHHHHHHcCCCcEEEEEEecCCcHHHHHHHHHHh-hhhEEee
Confidence 689999999999999999977655 5556666664 6655543
No 173
>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46
Probab=99.27 E-value=6.9e-12 Score=104.11 Aligned_cols=118 Identities=14% Similarity=0.163 Sum_probs=86.4
Q ss_pred HHHHHhhcCC-CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhH
Q psy1420 32 KDIFIDRLGP-THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRL 110 (241)
Q Consensus 32 ~~~~~~~l~~-~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~ 110 (241)
.+.+.+.+.. .++.+|||+|||+|..+ ..++. . ...+++++|+++.++
T Consensus 42 ~~~l~~~l~~~~~~~~vLDlgcG~G~~~-------------~~l~~--------~----------~~~~V~~vD~s~~~l 90 (202)
T 2fpo_A 42 RETLFNWLAPVIVDAQCLDCFAGSGALG-------------LEALS--------R----------YAAGATLIEMDRAVS 90 (202)
T ss_dssp HHHHHHHHHHHHTTCEEEETTCTTCHHH-------------HHHHH--------T----------TCSEEEEECSCHHHH
T ss_pred HHHHHHHHHhhcCCCeEEEeCCCcCHHH-------------HHHHh--------c----------CCCEEEEEECCHHHH
Confidence 3444444433 25679999999999988 33332 0 234799999999999
Q ss_pred HHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCC-CCCCCCceeEEeeeehhhccccHHHHHH
Q psy1420 111 RFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEE-LPIESDSYSAYTIAFGIRNVTRIDKALS 189 (241)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~D~V~~~~~l~~~~~~~~~l~ 189 (241)
+.+++++. ..++ ++++++++|+.. ++...++||+|++...++ .......++
T Consensus 91 ~~a~~~~~-------------------------~~~~--~~v~~~~~D~~~~~~~~~~~fD~V~~~~p~~-~~~~~~~l~ 142 (202)
T 2fpo_A 91 QQLIKNLA-------------------------TLKA--GNARVVNSNAMSFLAQKGTPHNIVFVDPPFR-RGLLEETIN 142 (202)
T ss_dssp HHHHHHHH-------------------------HTTC--CSEEEECSCHHHHHSSCCCCEEEEEECCSSS-TTTHHHHHH
T ss_pred HHHHHHHH-------------------------HcCC--CcEEEEECCHHHHHhhcCCCCCEEEECCCCC-CCcHHHHHH
Confidence 99999987 4454 268999999876 455567899999876643 456778888
Q ss_pred HHHH--hccCCcEEEEEecCH
Q psy1420 190 EAYR--VLKPGGRFLCLEFSH 208 (241)
Q Consensus 190 ~~~~--~LkpgG~l~i~~~~~ 208 (241)
.+.+ +|+|||++++.....
T Consensus 143 ~l~~~~~L~pgG~l~i~~~~~ 163 (202)
T 2fpo_A 143 LLEDNGWLADEALIYVESEVE 163 (202)
T ss_dssp HHHHTTCEEEEEEEEEEEEGG
T ss_pred HHHhcCccCCCcEEEEEECCC
Confidence 8866 599999998876544
No 174
>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}
Probab=99.27 E-value=1.2e-11 Score=109.31 Aligned_cols=129 Identities=15% Similarity=0.186 Sum_probs=88.9
Q ss_pred HHHhhcCC-CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHH
Q psy1420 34 IFIDRLGP-THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRF 112 (241)
Q Consensus 34 ~~~~~l~~-~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~ 112 (241)
.+++.+.. .++.+|||+|||||.++ ..++. ....+++++|+++.|++.
T Consensus 75 ~~l~~~~~~~~g~~vLDiGcGTG~~t-------------~~L~~------------------~ga~~V~aVDvs~~mL~~ 123 (291)
T 3hp7_A 75 KALAVFNLSVEDMITIDIGASTGGFT-------------DVMLQ------------------NGAKLVYAVDVGTNQLVW 123 (291)
T ss_dssp HHHHHTTCCCTTCEEEEETCTTSHHH-------------HHHHH------------------TTCSEEEEECSSSSCSCH
T ss_pred HHHHhcCCCccccEEEecCCCccHHH-------------HHHHh------------------CCCCEEEEEECCHHHHHH
Confidence 44455554 45679999999999998 43433 124589999999999988
Q ss_pred HHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeE-EecccCCCC---CCCCceeEEeeeehhhccccHHHHH
Q psy1420 113 LEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRF-LEANAEELP---IESDSYSAYTIAFGIRNVTRIDKAL 188 (241)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~d~~~~~---~~~~~~D~V~~~~~l~~~~~~~~~l 188 (241)
+.+... ++.. ...|+..++ ++..+||+|++..++++ ...+|
T Consensus 124 a~r~~~--------------------------------rv~~~~~~ni~~l~~~~l~~~~fD~v~~d~sf~s---l~~vL 168 (291)
T 3hp7_A 124 KLRQDD--------------------------------RVRSMEQYNFRYAEPVDFTEGLPSFASIDVSFIS---LNLIL 168 (291)
T ss_dssp HHHTCT--------------------------------TEEEECSCCGGGCCGGGCTTCCCSEEEECCSSSC---GGGTH
T ss_pred HHHhCc--------------------------------ccceecccCceecchhhCCCCCCCEEEEEeeHhh---HHHHH
Confidence 544321 1111 112222221 22345999998877664 47899
Q ss_pred HHHHHhccCCcEEEEE---ecCH---------------------HHHHHHHHHCCCceEEEEEe
Q psy1420 189 SEAYRVLKPGGRFLCL---EFSH---------------------EEFKSMIESAGFQYVTYENL 228 (241)
Q Consensus 189 ~~~~~~LkpgG~l~i~---~~~~---------------------~~~~~~l~~~Gf~~~~~~~~ 228 (241)
.++.++|||||+++++ +|.. +++.++++++||.+......
T Consensus 169 ~e~~rvLkpGG~lv~lvkPqfe~~~~~~~~~G~vrd~~~~~~~~~~v~~~~~~~Gf~v~~~~~s 232 (291)
T 3hp7_A 169 PALAKILVDGGQVVALVKPQFEAGREQIGKNGIVRESSIHEKVLETVTAFAVDYGFSVKGLDFS 232 (291)
T ss_dssp HHHHHHSCTTCEEEEEECGGGTSCGGGCC-CCCCCCHHHHHHHHHHHHHHHHHTTEEEEEEEEC
T ss_pred HHHHHHcCcCCEEEEEECcccccChhhcCCCCccCCHHHHHHHHHHHHHHHHHCCCEEEEEEEC
Confidence 9999999999999987 3321 77889999999998777654
No 175
>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}
Probab=99.26 E-value=1e-11 Score=105.02 Aligned_cols=116 Identities=14% Similarity=0.194 Sum_probs=85.6
Q ss_pred HHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHH
Q psy1420 33 DIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRF 112 (241)
Q Consensus 33 ~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~ 112 (241)
..+......+++.+|||+|||+|..+ ..++..++ ...+++++|+++.+++.
T Consensus 46 ~~l~~~~~~~~~~~vLdiG~G~G~~~-------------~~la~~~~----------------~~~~v~~vD~~~~~~~~ 96 (221)
T 3dr5_A 46 TTLAATTNGNGSTGAIAITPAAGLVG-------------LYILNGLA----------------DNTTLTCIDPESEHQRQ 96 (221)
T ss_dssp HHHHHHSCCTTCCEEEEESTTHHHHH-------------HHHHHHSC----------------TTSEEEEECSCHHHHHH
T ss_pred HHHHHhhCCCCCCCEEEEcCCchHHH-------------HHHHHhCC----------------CCCEEEEEECCHHHHHH
Confidence 33444444455569999999999988 33333100 35789999999999999
Q ss_pred HHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCC-C-CCCCceeEEeeeehhhccccHHHHHHH
Q psy1420 113 LEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL-P-IESDSYSAYTIAFGIRNVTRIDKALSE 190 (241)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~-~~~~~~D~V~~~~~l~~~~~~~~~l~~ 190 (241)
+++++. +.++..++++++.+|+.+. + .+.++||+|++... ..+....+++
T Consensus 97 a~~~~~-------------------------~~g~~~~~i~~~~gda~~~l~~~~~~~fD~V~~d~~---~~~~~~~l~~ 148 (221)
T 3dr5_A 97 AKALFR-------------------------EAGYSPSRVRFLLSRPLDVMSRLANDSYQLVFGQVS---PMDLKALVDA 148 (221)
T ss_dssp HHHHHH-------------------------HTTCCGGGEEEECSCHHHHGGGSCTTCEEEEEECCC---TTTHHHHHHH
T ss_pred HHHHHH-------------------------HcCCCcCcEEEEEcCHHHHHHHhcCCCcCeEEEcCc---HHHHHHHHHH
Confidence 999988 5555424799999997654 2 33578999997643 3456678999
Q ss_pred HHHhccCCcEEEEEe
Q psy1420 191 AYRVLKPGGRFLCLE 205 (241)
Q Consensus 191 ~~~~LkpgG~l~i~~ 205 (241)
+.++|||||++++.+
T Consensus 149 ~~~~LkpGG~lv~dn 163 (221)
T 3dr5_A 149 AWPLLRRGGALVLAD 163 (221)
T ss_dssp HHHHEEEEEEEEETT
T ss_pred HHHHcCCCcEEEEeC
Confidence 999999999999843
No 176
>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}
Probab=99.26 E-value=9.7e-12 Score=111.53 Aligned_cols=118 Identities=14% Similarity=0.171 Sum_probs=90.9
Q ss_pred HHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhH
Q psy1420 31 WKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRL 110 (241)
Q Consensus 31 ~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~ 110 (241)
..+.+++.+...++.+|||+|||+|..+ ..++. . . +..+++++|+++.++
T Consensus 184 ~~~~ll~~l~~~~~~~VLDlGcG~G~~~-------------~~la~----~---~----------~~~~v~~vD~s~~~l 233 (343)
T 2pjd_A 184 GSQLLLSTLTPHTKGKVLDVGCGAGVLS-------------VAFAR----H---S----------PKIRLTLCDVSAPAV 233 (343)
T ss_dssp HHHHHHHHSCTTCCSBCCBTTCTTSHHH-------------HHHHH----H---C----------TTCBCEEEESBHHHH
T ss_pred HHHHHHHhcCcCCCCeEEEecCccCHHH-------------HHHHH----H---C----------CCCEEEEEECCHHHH
Confidence 3566777776666779999999999988 43333 0 0 235899999999999
Q ss_pred HHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhc-----cccHH
Q psy1420 111 RFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRN-----VTRID 185 (241)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~-----~~~~~ 185 (241)
+.+++++. ..++. .++...|+...+ .++||+|+++..+|+ ..+..
T Consensus 234 ~~a~~~~~-------------------------~~~~~---~~~~~~d~~~~~--~~~fD~Iv~~~~~~~g~~~~~~~~~ 283 (343)
T 2pjd_A 234 EASRATLA-------------------------ANGVE---GEVFASNVFSEV--KGRFDMIISNPPFHDGMQTSLDAAQ 283 (343)
T ss_dssp HHHHHHHH-------------------------HTTCC---CEEEECSTTTTC--CSCEEEEEECCCCCSSSHHHHHHHH
T ss_pred HHHHHHHH-------------------------HhCCC---CEEEEccccccc--cCCeeEEEECCCcccCccCCHHHHH
Confidence 99999887 43433 566788876643 568999999988774 44568
Q ss_pred HHHHHHHHhccCCcEEEEEecCH
Q psy1420 186 KALSEAYRVLKPGGRFLCLEFSH 208 (241)
Q Consensus 186 ~~l~~~~~~LkpgG~l~i~~~~~ 208 (241)
++++++.++|||||.+++.....
T Consensus 284 ~~l~~~~~~LkpgG~l~i~~~~~ 306 (343)
T 2pjd_A 284 TLIRGAVRHLNSGGELRIVANAF 306 (343)
T ss_dssp HHHHHHGGGEEEEEEEEEEEETT
T ss_pred HHHHHHHHhCCCCcEEEEEEcCC
Confidence 99999999999999999986555
No 177
>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46
Probab=99.26 E-value=5.1e-12 Score=102.04 Aligned_cols=120 Identities=14% Similarity=0.141 Sum_probs=87.8
Q ss_pred HHHHHHhhcC-CCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHh
Q psy1420 31 WKDIFIDRLG-PTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPR 109 (241)
Q Consensus 31 ~~~~~~~~l~-~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~ 109 (241)
+.+.+.+.+. ..++.+|||+|||+|..+ ..++. ....+++++|+++.+
T Consensus 31 ~~~~~~~~l~~~~~~~~vLD~GcG~G~~~-------------~~~~~------------------~~~~~v~~vD~~~~~ 79 (187)
T 2fhp_A 31 VKESIFNMIGPYFDGGMALDLYSGSGGLA-------------IEAVS------------------RGMDKSICIEKNFAA 79 (187)
T ss_dssp HHHHHHHHHCSCCSSCEEEETTCTTCHHH-------------HHHHH------------------TTCSEEEEEESCHHH
T ss_pred HHHHHHHHHHhhcCCCCEEEeCCccCHHH-------------HHHHH------------------cCCCEEEEEECCHHH
Confidence 4455555553 356789999999999988 33332 124579999999999
Q ss_pred HHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCC----CCCCceeEEeeeehhhccccHH
Q psy1420 110 LRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELP----IESDSYSAYTIAFGIRNVTRID 185 (241)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~~D~V~~~~~l~~~~~~~ 185 (241)
++.+++++. ..++. ++++++++|+.+.. .+.++||+|++....+ .....
T Consensus 80 ~~~a~~~~~-------------------------~~~~~-~~~~~~~~d~~~~~~~~~~~~~~fD~i~~~~~~~-~~~~~ 132 (187)
T 2fhp_A 80 LKVIKENIA-------------------------ITKEP-EKFEVRKMDANRALEQFYEEKLQFDLVLLDPPYA-KQEIV 132 (187)
T ss_dssp HHHHHHHHH-------------------------HHTCG-GGEEEEESCHHHHHHHHHHTTCCEEEEEECCCGG-GCCHH
T ss_pred HHHHHHHHH-------------------------HhCCC-cceEEEECcHHHHHHHHHhcCCCCCEEEECCCCC-chhHH
Confidence 999999887 44443 36889999987632 2256899999886643 45566
Q ss_pred HHHHHH--HHhccCCcEEEEEecCH
Q psy1420 186 KALSEA--YRVLKPGGRFLCLEFSH 208 (241)
Q Consensus 186 ~~l~~~--~~~LkpgG~l~i~~~~~ 208 (241)
..+..+ .++|+|||++++.....
T Consensus 133 ~~~~~l~~~~~L~~gG~l~~~~~~~ 157 (187)
T 2fhp_A 133 SQLEKMLERQLLTNEAVIVCETDKT 157 (187)
T ss_dssp HHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred HHHHHHHHhcccCCCCEEEEEeCCc
Confidence 777777 88999999999876554
No 178
>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0
Probab=99.25 E-value=3.7e-11 Score=100.26 Aligned_cols=108 Identities=14% Similarity=0.114 Sum_probs=82.1
Q ss_pred CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCC
Q psy1420 42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP 121 (241)
Q Consensus 42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~ 121 (241)
.++.+|||+|||+|..+ ..++. .+. ...+++++|+++.+++.+++++.
T Consensus 63 ~~~~~vLdiG~G~G~~~-------------~~la~----~~~------------~~~~v~~vD~~~~~~~~a~~~~~--- 110 (225)
T 3tr6_A 63 MQAKKVIDIGTFTGYSA-------------IAMGL----ALP------------KDGTLITCDVDEKSTALAKEYWE--- 110 (225)
T ss_dssp HTCSEEEEECCTTSHHH-------------HHHHT----TCC------------TTCEEEEEESCHHHHHHHHHHHH---
T ss_pred hCCCEEEEeCCcchHHH-------------HHHHH----hCC------------CCCEEEEEeCCHHHHHHHHHHHH---
Confidence 46679999999999988 43333 100 25689999999999999999987
Q ss_pred CccccccccceecceeeeeeccccCCCCCCeeEEecccCCC-C-CC----CCceeEEeeeehhhccccHHHHHHHHHHhc
Q psy1420 122 IESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL-P-IE----SDSYSAYTIAFGIRNVTRIDKALSEAYRVL 195 (241)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~-~~----~~~~D~V~~~~~l~~~~~~~~~l~~~~~~L 195 (241)
..++. ++++++++|+.+. + .. .++||+|++... ..+...+++.+.++|
T Consensus 111 ----------------------~~~~~-~~v~~~~~d~~~~~~~~~~~~~~~~fD~v~~~~~---~~~~~~~l~~~~~~L 164 (225)
T 3tr6_A 111 ----------------------KAGLS-DKIGLRLSPAKDTLAELIHAGQAWQYDLIYIDAD---KANTDLYYEESLKLL 164 (225)
T ss_dssp ----------------------HTTCT-TTEEEEESCHHHHHHHHHTTTCTTCEEEEEECSC---GGGHHHHHHHHHHHE
T ss_pred ----------------------HCCCC-CceEEEeCCHHHHHHHhhhccCCCCccEEEECCC---HHHHHHHHHHHHHhc
Confidence 55655 4689999998543 2 11 168999996443 456778999999999
Q ss_pred cCCcEEEEEecC
Q psy1420 196 KPGGRFLCLEFS 207 (241)
Q Consensus 196 kpgG~l~i~~~~ 207 (241)
||||++++.+..
T Consensus 165 ~pgG~lv~~~~~ 176 (225)
T 3tr6_A 165 REGGLIAVDNVL 176 (225)
T ss_dssp EEEEEEEEECSS
T ss_pred CCCcEEEEeCCC
Confidence 999999986644
No 179
>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51
Probab=99.24 E-value=2.2e-11 Score=109.27 Aligned_cols=134 Identities=13% Similarity=0.156 Sum_probs=94.7
Q ss_pred HHHHhhcC-CCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHH
Q psy1420 33 DIFIDRLG-PTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLR 111 (241)
Q Consensus 33 ~~~~~~l~-~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~ 111 (241)
+.+.+.+. ..++.+|||+|||+|..+ ..++. ....++++|+|+.+++
T Consensus 142 ~~l~~~~~~~~~~~~VLDlgcGtG~~s-------------l~la~-------------------~ga~V~~VD~s~~al~ 189 (332)
T 2igt_A 142 EWLKNAVETADRPLKVLNLFGYTGVAS-------------LVAAA-------------------AGAEVTHVDASKKAIG 189 (332)
T ss_dssp HHHHHHHHHSSSCCEEEEETCTTCHHH-------------HHHHH-------------------TTCEEEEECSCHHHHH
T ss_pred HHHHHHHHhcCCCCcEEEcccccCHHH-------------HHHHH-------------------cCCEEEEEECCHHHHH
Confidence 33444432 346679999999999988 44433 2348999999999999
Q ss_pred HHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCC----CCCceeEEeeee---h-------
Q psy1420 112 FLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPI----ESDSYSAYTIAF---G------- 177 (241)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~----~~~~~D~V~~~~---~------- 177 (241)
.+++++. ..++.+.+++++++|+..... ..++||+|++.- .
T Consensus 190 ~a~~n~~-------------------------~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~Ii~dPP~~~~~~~~~~ 244 (332)
T 2igt_A 190 WAKENQV-------------------------LAGLEQAPIRWICEDAMKFIQREERRGSTYDIILTDPPKFGRGTHGEV 244 (332)
T ss_dssp HHHHHHH-------------------------HHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEEECCCSEEECTTCCE
T ss_pred HHHHHHH-------------------------HcCCCccceEEEECcHHHHHHHHHhcCCCceEEEECCccccCCchHHH
Confidence 9999987 555552258999999876421 146899999842 1
Q ss_pred hhccccHHHHHHHHHHhccCCcEEEEEecC-----HHHHHHHHH----HCCCceE
Q psy1420 178 IRNVTRIDKALSEAYRVLKPGGRFLCLEFS-----HEEFKSMIE----SAGFQYV 223 (241)
Q Consensus 178 l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~-----~~~~~~~l~----~~Gf~~~ 223 (241)
.+...+...++..+.++|+|||.+++.... .+.+.++++ ++|+.+.
T Consensus 245 ~~~~~~~~~ll~~~~~~LkpgG~lli~~~~~~~~~~~~~~~~l~~a~~~~g~~v~ 299 (332)
T 2igt_A 245 WQLFDHLPLMLDICREILSPKALGLVLTAYSIRASFYSMHELMRETMRGAGGVVA 299 (332)
T ss_dssp EEHHHHHHHHHHHHHHTBCTTCCEEEEEECCTTSCHHHHHHHHHHHTTTSCSEEE
T ss_pred HHHHHHHHHHHHHHHHhcCcCcEEEEEECCCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence 223456788999999999999997765422 255555555 7888765
No 180
>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}
Probab=99.23 E-value=1.5e-11 Score=103.64 Aligned_cols=114 Identities=12% Similarity=0.166 Sum_probs=86.5
Q ss_pred HHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHH
Q psy1420 33 DIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRF 112 (241)
Q Consensus 33 ~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~ 112 (241)
..+...+...++.+|||+|||+|..+ ..++. .. +..+++++|+++.+++.
T Consensus 44 ~~l~~~~~~~~~~~vLdiG~G~G~~~-------------~~la~----~~-------------~~~~v~~vD~~~~~~~~ 93 (233)
T 2gpy_A 44 ESLLHLLKMAAPARILEIGTAIGYSA-------------IRMAQ----AL-------------PEATIVSIERDERRYEE 93 (233)
T ss_dssp HHHHHHHHHHCCSEEEEECCTTSHHH-------------HHHHH----HC-------------TTCEEEEECCCHHHHHH
T ss_pred HHHHHHHhccCCCEEEEecCCCcHHH-------------HHHHH----HC-------------CCCEEEEEECCHHHHHH
Confidence 33444444456779999999999988 44433 10 24689999999999999
Q ss_pred HHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCC-CCC--CCceeEEeeeehhhccccHHHHHH
Q psy1420 113 LEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL-PIE--SDSYSAYTIAFGIRNVTRIDKALS 189 (241)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~--~~~~D~V~~~~~l~~~~~~~~~l~ 189 (241)
+++++. ..++. .++.+..+|+... +.. .++||+|++.... .+...+++
T Consensus 94 a~~~~~-------------------------~~~~~-~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~~~---~~~~~~l~ 144 (233)
T 2gpy_A 94 AHKHVK-------------------------ALGLE-SRIELLFGDALQLGEKLELYPLFDVLFIDAAK---GQYRRFFD 144 (233)
T ss_dssp HHHHHH-------------------------HTTCT-TTEEEECSCGGGSHHHHTTSCCEEEEEEEGGG---SCHHHHHH
T ss_pred HHHHHH-------------------------HcCCC-CcEEEEECCHHHHHHhcccCCCccEEEECCCH---HHHHHHHH
Confidence 999887 55554 4688999998764 322 4689999987664 36788999
Q ss_pred HHHHhccCCcEEEEEe
Q psy1420 190 EAYRVLKPGGRFLCLE 205 (241)
Q Consensus 190 ~~~~~LkpgG~l~i~~ 205 (241)
.+.++|+|||++++.+
T Consensus 145 ~~~~~L~pgG~lv~~~ 160 (233)
T 2gpy_A 145 MYSPMVRPGGLILSDN 160 (233)
T ss_dssp HHGGGEEEEEEEEEET
T ss_pred HHHHHcCCCeEEEEEc
Confidence 9999999999999864
No 181
>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}
Probab=99.23 E-value=7.8e-12 Score=106.76 Aligned_cols=132 Identities=16% Similarity=0.179 Sum_probs=83.7
Q ss_pred HHHHhhcCC-CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHH
Q psy1420 33 DIFIDRLGP-THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLR 111 (241)
Q Consensus 33 ~~~~~~l~~-~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~ 111 (241)
+.+++.+.. .++.+|||+|||+|.++ ..++. ....+++++|+|+.|++
T Consensus 26 ~~~L~~~~~~~~g~~VLDiGcGtG~~t-------------~~la~------------------~g~~~V~gvDis~~ml~ 74 (232)
T 3opn_A 26 EKALKEFHLEINGKTCLDIGSSTGGFT-------------DVMLQ------------------NGAKLVYALDVGTNQLA 74 (232)
T ss_dssp HHHHHHTTCCCTTCEEEEETCTTSHHH-------------HHHHH------------------TTCSEEEEECSSCCCCC
T ss_pred HHHHHHcCCCCCCCEEEEEccCCCHHH-------------HHHHh------------------cCCCEEEEEcCCHHHHH
Confidence 344455554 45669999999999988 44443 11248999999999999
Q ss_pred HHHHHHhcCCCccccccccceecceeeeeeccccCC-CCCCeeEEe-cccCCCCCCCCceeEEeeeehhhccccHHHHHH
Q psy1420 112 FLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDI-PNPRLRFLE-ANAEELPIESDSYSAYTIAFGIRNVTRIDKALS 189 (241)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~ 189 (241)
.+.++.. +... ...++.+.. .++.........+|+++++ + ..++.
T Consensus 75 ~a~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~d~~~~D~v~~~-----l---~~~l~ 121 (232)
T 3opn_A 75 WKIRSDE-------------------------RVVVMEQFNFRNAVLADFEQGRPSFTSIDVSFIS-----L---DLILP 121 (232)
T ss_dssp HHHHTCT-------------------------TEEEECSCCGGGCCGGGCCSCCCSEEEECCSSSC-----G---GGTHH
T ss_pred HHHHhCc-------------------------cccccccceEEEeCHhHcCcCCCCEEEEEEEhhh-----H---HHHHH
Confidence 8776543 1000 000122222 2222211122345555543 2 67999
Q ss_pred HHHHhccCCcEEEEEe---cC---------------------HHHHHHHHHHCCCceEEEEEe
Q psy1420 190 EAYRVLKPGGRFLCLE---FS---------------------HEEFKSMIESAGFQYVTYENL 228 (241)
Q Consensus 190 ~~~~~LkpgG~l~i~~---~~---------------------~~~~~~~l~~~Gf~~~~~~~~ 228 (241)
+++++|||||++++.. +. .+++.++++++||++..+...
T Consensus 122 ~i~rvLkpgG~lv~~~~p~~e~~~~~~~~~G~~~d~~~~~~~~~~l~~~l~~aGf~v~~~~~~ 184 (232)
T 3opn_A 122 PLYEILEKNGEVAALIKPQFEAGREQVGKNGIIRDPKVHQMTIEKVLKTATQLGFSVKGLTFS 184 (232)
T ss_dssp HHHHHSCTTCEEEEEECHHHHSCHHHHC-CCCCCCHHHHHHHHHHHHHHHHHHTEEEEEEEEC
T ss_pred HHHHhccCCCEEEEEECcccccCHHHhCcCCeecCcchhHHHHHHHHHHHHHCCCEEEEEEEc
Confidence 9999999999998862 10 068899999999998887654
No 182
>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A
Probab=99.23 E-value=1e-11 Score=105.99 Aligned_cols=141 Identities=11% Similarity=-0.017 Sum_probs=84.2
Q ss_pred HHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhH
Q psy1420 31 WKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRL 110 (241)
Q Consensus 31 ~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~ 110 (241)
+.+.+++.+...++.+|||+|||+|..+ ..++. .+. ....+++++|+++.++
T Consensus 39 l~~~~l~~~~~~~~~~vLD~gcGsG~~~-------------~~la~----~~~-----------~~~~~v~gvDis~~~l 90 (250)
T 1o9g_A 39 IFQRALARLPGDGPVTLWDPCCGSGYLL-------------TVLGL----LHR-----------RSLRQVIASDVDPAPL 90 (250)
T ss_dssp HHHHHHHTSSCCSCEEEEETTCTTSHHH-------------HHHHH----HTG-----------GGEEEEEEEESCHHHH
T ss_pred HHHHHHHhcccCCCCeEEECCCCCCHHH-------------HHHHH----Hhc-----------cCCCeEEEEECCHHHH
Confidence 3344455554456789999999999887 33333 100 0245799999999999
Q ss_pred HHHHHHHhcCCCccccccccceecc----------eee------------ee-eccccCCCCCCeeEEecccCCCCC---
Q psy1420 111 RFLEANAEELPIESDSYSAYTIAFG----------IRN------------VT-RIDKIDIPNPRLRFLEANAEELPI--- 164 (241)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~------------~~-~~~~~~~~~~~~~~~~~d~~~~~~--- 164 (241)
+.+++++...... .+... ..+ +. .....+.. ....+.+.|+.....
T Consensus 91 ~~A~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~D~~~~~~~~~ 162 (250)
T 1o9g_A 91 ELAAKNLALLSPA-------GLTARELERREQSERFGKPSYLEAAQAARRLRERLTAEGGA-LPCAIRTADVFDPRALSA 162 (250)
T ss_dssp HHHHHHHHTTSHH-------HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHTTSS-CCEEEEECCTTCGGGHHH
T ss_pred HHHHHHHHHhhhc-------cccccchhhhhhhhhcccccchhhhhhhhhhhhhccccccc-cccceeeccccccccccc
Confidence 9999887611000 00000 000 00 00000000 012288888876421
Q ss_pred --CCCceeEEeeeehhhcc---------ccHHHHHHHHHHhccCCcEEEEEecC
Q psy1420 165 --ESDSYSAYTIAFGIRNV---------TRIDKALSEAYRVLKPGGRFLCLEFS 207 (241)
Q Consensus 165 --~~~~~D~V~~~~~l~~~---------~~~~~~l~~~~~~LkpgG~l~i~~~~ 207 (241)
...+||+|+++..+... .....+++++.++|+|||+++++...
T Consensus 163 ~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 216 (250)
T 1o9g_A 163 VLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPAHAVIAVTDRS 216 (250)
T ss_dssp HHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCTTCEEEEEESS
T ss_pred ccCCCCceEEEeCCCeeccccccccccccHHHHHHHHHHHhcCCCcEEEEeCcc
Confidence 33489999998655433 23568999999999999999986544
No 183
>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*
Probab=99.23 E-value=9.3e-11 Score=97.81 Aligned_cols=108 Identities=10% Similarity=0.062 Sum_probs=81.6
Q ss_pred CCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcC
Q psy1420 41 PTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEEL 120 (241)
Q Consensus 41 ~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~ 120 (241)
..++.+|||+|||+|..+ ..++. .+ + ...+++++|+++.+++.+++++.
T Consensus 56 ~~~~~~vLdiG~G~G~~~-------------~~la~----~~---~---------~~~~v~~vD~~~~~~~~a~~~~~-- 104 (223)
T 3duw_A 56 IQGARNILEIGTLGGYST-------------IWLAR----GL---S---------SGGRVVTLEASEKHADIARSNIE-- 104 (223)
T ss_dssp HHTCSEEEEECCTTSHHH-------------HHHHT----TC---C---------SSCEEEEEESCHHHHHHHHHHHH--
T ss_pred hhCCCEEEEecCCccHHH-------------HHHHH----hC---C---------CCCEEEEEECCHHHHHHHHHHHH--
Confidence 356779999999999988 43333 10 0 25689999999999999999987
Q ss_pred CCccccccccceecceeeeeeccccCCCCCCeeEEecccCCC-C-CC---CCceeEEeeeehhhccccHHHHHHHHHHhc
Q psy1420 121 PIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL-P-IE---SDSYSAYTIAFGIRNVTRIDKALSEAYRVL 195 (241)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~-~~---~~~~D~V~~~~~l~~~~~~~~~l~~~~~~L 195 (241)
..++. .+++++.+|+.+. + .. .++||+|++... .......++.+.++|
T Consensus 105 -----------------------~~~~~-~~v~~~~~d~~~~~~~~~~~~~~~fD~v~~d~~---~~~~~~~l~~~~~~L 157 (223)
T 3duw_A 105 -----------------------RANLN-DRVEVRTGLALDSLQQIENEKYEPFDFIFIDAD---KQNNPAYFEWALKLS 157 (223)
T ss_dssp -----------------------HTTCT-TTEEEEESCHHHHHHHHHHTTCCCCSEEEECSC---GGGHHHHHHHHHHTC
T ss_pred -----------------------HcCCC-CcEEEEEcCHHHHHHHHHhcCCCCcCEEEEcCC---cHHHHHHHHHHHHhc
Confidence 55655 4689999998653 1 11 257999997654 345678999999999
Q ss_pred cCCcEEEEEec
Q psy1420 196 KPGGRFLCLEF 206 (241)
Q Consensus 196 kpgG~l~i~~~ 206 (241)
+|||++++.+.
T Consensus 158 ~pgG~lv~~~~ 168 (223)
T 3duw_A 158 RPGTVIIGDNV 168 (223)
T ss_dssp CTTCEEEEESC
T ss_pred CCCcEEEEeCC
Confidence 99999887543
No 184
>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*
Probab=99.23 E-value=4e-11 Score=100.30 Aligned_cols=115 Identities=21% Similarity=0.159 Sum_probs=84.8
Q ss_pred HHHHhhcC--CCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhH
Q psy1420 33 DIFIDRLG--PTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRL 110 (241)
Q Consensus 33 ~~~~~~l~--~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~ 110 (241)
..+++.+. ..++.+|||+|||+|..+ ..++..++ ...+++++|+++.++
T Consensus 65 ~~~l~~l~~~~~~~~~vLDiG~G~G~~~-------------~~la~~~~----------------~~~~v~~vD~s~~~~ 115 (226)
T 1i1n_A 65 AYALELLFDQLHEGAKALDVGSGSGILT-------------ACFARMVG----------------CTGKVIGIDHIKELV 115 (226)
T ss_dssp HHHHHHTTTTSCTTCEEEEETCTTSHHH-------------HHHHHHHC----------------TTCEEEEEESCHHHH
T ss_pred HHHHHHHHhhCCCCCEEEEEcCCcCHHH-------------HHHHHHhC----------------CCcEEEEEeCCHHHH
Confidence 34555554 578889999999999988 44443111 235899999999999
Q ss_pred HHHHHHHhcCCCccccccccceecceeeeeeccccCC---CCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHH
Q psy1420 111 RFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDI---PNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKA 187 (241)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~ 187 (241)
+.+++++. ..+. ..+++.+...|+...+...++||+|++...++++
T Consensus 116 ~~a~~~~~-------------------------~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~i~~~~~~~~~------ 164 (226)
T 1i1n_A 116 DDSVNNVR-------------------------KDDPTLLSSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVV------ 164 (226)
T ss_dssp HHHHHHHH-------------------------HHCTHHHHTSSEEEEESCGGGCCGGGCCEEEEEECSBBSSC------
T ss_pred HHHHHHHH-------------------------hhcccccCCCcEEEEECCcccCcccCCCcCEEEECCchHHH------
Confidence 99998876 3221 0136888999987665456789999988877654
Q ss_pred HHHHHHhccCCcEEEEEecC
Q psy1420 188 LSEAYRVLKPGGRFLCLEFS 207 (241)
Q Consensus 188 l~~~~~~LkpgG~l~i~~~~ 207 (241)
++++.++|||||++++....
T Consensus 165 ~~~~~~~LkpgG~lv~~~~~ 184 (226)
T 1i1n_A 165 PQALIDQLKPGGRLILPVGP 184 (226)
T ss_dssp CHHHHHTEEEEEEEEEEESC
T ss_pred HHHHHHhcCCCcEEEEEEec
Confidence 36789999999999987644
No 185
>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*
Probab=99.23 E-value=2.5e-11 Score=102.61 Aligned_cols=111 Identities=14% Similarity=0.196 Sum_probs=84.8
Q ss_pred HHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhH
Q psy1420 31 WKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRL 110 (241)
Q Consensus 31 ~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~ 110 (241)
....+.+.+...++.+|||+|||+|..+ ..++. . ...+++++|+++.++
T Consensus 79 ~~~~~~~~l~~~~~~~vLdiG~G~G~~~-------------~~la~----~--------------~~~~v~~vD~~~~~~ 127 (235)
T 1jg1_A 79 MVAIMLEIANLKPGMNILEVGTGSGWNA-------------ALISE----I--------------VKTDVYTIERIPELV 127 (235)
T ss_dssp HHHHHHHHHTCCTTCCEEEECCTTSHHH-------------HHHHH----H--------------HCSCEEEEESCHHHH
T ss_pred HHHHHHHhcCCCCCCEEEEEeCCcCHHH-------------HHHHH----H--------------hCCEEEEEeCCHHHH
Confidence 3455666677788889999999999988 44443 1 115799999999999
Q ss_pred HHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCC-CceeEEeeeehhhccccHHHHHH
Q psy1420 111 RFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIES-DSYSAYTIAFGIRNVTRIDKALS 189 (241)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~~D~V~~~~~l~~~~~~~~~l~ 189 (241)
+.++++.. ..++. ++++..+|+ ..+++. .+||+|++..+++++.+
T Consensus 128 ~~a~~~~~-------------------------~~~~~--~v~~~~~d~-~~~~~~~~~fD~Ii~~~~~~~~~~------ 173 (235)
T 1jg1_A 128 EFAKRNLE-------------------------RAGVK--NVHVILGDG-SKGFPPKAPYDVIIVTAGAPKIPE------ 173 (235)
T ss_dssp HHHHHHHH-------------------------HTTCC--SEEEEESCG-GGCCGGGCCEEEEEECSBBSSCCH------
T ss_pred HHHHHHHH-------------------------HcCCC--CcEEEECCc-ccCCCCCCCccEEEECCcHHHHHH------
Confidence 99999887 44554 488888887 333333 35999999988877653
Q ss_pred HHHHhccCCcEEEEEec
Q psy1420 190 EAYRVLKPGGRFLCLEF 206 (241)
Q Consensus 190 ~~~~~LkpgG~l~i~~~ 206 (241)
++.+.|+|||++++...
T Consensus 174 ~~~~~L~pgG~lvi~~~ 190 (235)
T 1jg1_A 174 PLIEQLKIGGKLIIPVG 190 (235)
T ss_dssp HHHHTEEEEEEEEEEEC
T ss_pred HHHHhcCCCcEEEEEEe
Confidence 68899999999998654
No 186
>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31
Probab=99.23 E-value=3.1e-11 Score=112.02 Aligned_cols=119 Identities=8% Similarity=0.033 Sum_probs=87.4
Q ss_pred HHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhH
Q psy1420 31 WKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRL 110 (241)
Q Consensus 31 ~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~ 110 (241)
....+++.+...++.+|||+|||+|..+ ..++. .. ....++|+|+++.++
T Consensus 230 ~v~~ml~~l~l~~g~~VLDLGCGsG~la-------------~~LA~----~~-------------g~~~V~GVDis~~~l 279 (433)
T 1u2z_A 230 FLSDVYQQCQLKKGDTFMDLGSGVGNCV-------------VQAAL----EC-------------GCALSFGCEIMDDAS 279 (433)
T ss_dssp HHHHHHHHTTCCTTCEEEEESCTTSHHH-------------HHHHH----HH-------------CCSEEEEEECCHHHH
T ss_pred HHHHHHHhcCCCCCCEEEEeCCCcCHHH-------------HHHHH----HC-------------CCCEEEEEeCCHHHH
Confidence 3456777778888999999999999988 44333 10 134699999999998
Q ss_pred HHH-------HHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCC--CC--CCCceeEEeeeehhh
Q psy1420 111 RFL-------EANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL--PI--ESDSYSAYTIAFGIR 179 (241)
Q Consensus 111 ~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~--~~~~~D~V~~~~~l~ 179 (241)
+.| ++++. ..++...+++++.+|.... ++ ...+||+|+++..+
T Consensus 280 ~~A~~Ml~~ar~~~~-------------------------~~Gl~~~nV~~i~gD~~~~~~~~~~~~~~FDvIvvn~~l- 333 (433)
T 1u2z_A 280 DLTILQYEELKKRCK-------------------------LYGMRLNNVEFSLKKSFVDNNRVAELIPQCDVILVNNFL- 333 (433)
T ss_dssp HHHHHHHHHHHHHHH-------------------------HTTBCCCCEEEEESSCSTTCHHHHHHGGGCSEEEECCTT-
T ss_pred HHHHHhHHHHHHHHH-------------------------HcCCCCCceEEEEcCccccccccccccCCCCEEEEeCcc-
Confidence 888 66666 4443213688887754422 11 13689999987666
Q ss_pred ccccHHHHHHHHHHhccCCcEEEEEe
Q psy1420 180 NVTRIDKALSEAYRVLKPGGRFLCLE 205 (241)
Q Consensus 180 ~~~~~~~~l~~~~~~LkpgG~l~i~~ 205 (241)
+.+++...|.++.+.|||||++++.+
T Consensus 334 ~~~d~~~~L~el~r~LKpGG~lVi~d 359 (433)
T 1u2z_A 334 FDEDLNKKVEKILQTAKVGCKIISLK 359 (433)
T ss_dssp CCHHHHHHHHHHHTTCCTTCEEEESS
T ss_pred ccccHHHHHHHHHHhCCCCeEEEEee
Confidence 45778889999999999999999864
No 187
>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46
Probab=99.23 E-value=2.9e-12 Score=101.88 Aligned_cols=104 Identities=13% Similarity=0.233 Sum_probs=78.2
Q ss_pred CCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCC
Q psy1420 43 HDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPI 122 (241)
Q Consensus 43 ~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~ 122 (241)
++.+|||+|||+|..+ ..++. ....++++|+++.+++.+++++.
T Consensus 41 ~~~~vLD~GcG~G~~~-------------~~l~~-------------------~~~~v~~vD~~~~~~~~a~~~~~---- 84 (171)
T 1ws6_A 41 RRGRFLDPFAGSGAVG-------------LEAAS-------------------EGWEAVLVEKDPEAVRLLKENVR---- 84 (171)
T ss_dssp TCCEEEEETCSSCHHH-------------HHHHH-------------------TTCEEEEECCCHHHHHHHHHHHH----
T ss_pred CCCeEEEeCCCcCHHH-------------HHHHH-------------------CCCeEEEEeCCHHHHHHHHHHHH----
Confidence 6779999999999988 44433 22349999999999999999887
Q ss_pred ccccccccceecceeeeeeccccCCCCCCeeEEecccCCC-C-C--CCCceeEEeeeehhhccccHHHHHHHHH--Hhcc
Q psy1420 123 ESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL-P-I--ESDSYSAYTIAFGIRNVTRIDKALSEAY--RVLK 196 (241)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~-~--~~~~~D~V~~~~~l~~~~~~~~~l~~~~--~~Lk 196 (241)
..++ ++++.+.|+.+. + . ..++||+|++...++ ......++.+. ++||
T Consensus 85 ---------------------~~~~---~~~~~~~d~~~~~~~~~~~~~~~D~i~~~~~~~--~~~~~~~~~~~~~~~L~ 138 (171)
T 1ws6_A 85 ---------------------RTGL---GARVVALPVEVFLPEAKAQGERFTVAFMAPPYA--MDLAALFGELLASGLVE 138 (171)
T ss_dssp ---------------------HHTC---CCEEECSCHHHHHHHHHHTTCCEEEEEECCCTT--SCTTHHHHHHHHHTCEE
T ss_pred ---------------------HcCC---ceEEEeccHHHHHHhhhccCCceEEEEECCCCc--hhHHHHHHHHHhhcccC
Confidence 4333 478888887763 2 1 124799999987665 55566677777 9999
Q ss_pred CCcEEEEEecCH
Q psy1420 197 PGGRFLCLEFSH 208 (241)
Q Consensus 197 pgG~l~i~~~~~ 208 (241)
|||++++.....
T Consensus 139 ~gG~~~~~~~~~ 150 (171)
T 1ws6_A 139 AGGLYVLQHPKD 150 (171)
T ss_dssp EEEEEEEEEETT
T ss_pred CCcEEEEEeCCc
Confidence 999999876554
No 188
>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32
Probab=99.21 E-value=7.5e-10 Score=91.10 Aligned_cols=127 Identities=9% Similarity=0.105 Sum_probs=92.9
Q ss_pred CCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhc
Q psy1420 40 GPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEE 119 (241)
Q Consensus 40 ~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~ 119 (241)
...++.+|||+|||+|..+ ..++. .....++++|+++.+++.+++++.
T Consensus 46 ~~~~~~~vlD~g~G~G~~~-------------~~l~~------------------~~~~~v~~vD~~~~~~~~a~~~~~- 93 (207)
T 1wy7_A 46 GDIEGKVVADLGAGTGVLS-------------YGALL------------------LGAKEVICVEVDKEAVDVLIENLG- 93 (207)
T ss_dssp TSSTTCEEEEETCTTCHHH-------------HHHHH------------------TTCSEEEEEESCHHHHHHHHHHTG-
T ss_pred CCCCcCEEEEeeCCCCHHH-------------HHHHH------------------cCCCEEEEEECCHHHHHHHHHHHH-
Confidence 4557789999999999988 44333 112469999999999999999877
Q ss_pred CCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccc--cHHHHHHHHHHhccC
Q psy1420 120 LPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVT--RIDKALSEAYRVLKP 197 (241)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~--~~~~~l~~~~~~Lkp 197 (241)
..++ +++++++|+..++ .+||+|+++...+... .....++.+.+++
T Consensus 94 ------------------------~~~~---~~~~~~~d~~~~~---~~~D~v~~~~p~~~~~~~~~~~~l~~~~~~l-- 141 (207)
T 1wy7_A 94 ------------------------EFKG---KFKVFIGDVSEFN---SRVDIVIMNPPFGSQRKHADRPFLLKAFEIS-- 141 (207)
T ss_dssp ------------------------GGTT---SEEEEESCGGGCC---CCCSEEEECCCCSSSSTTTTHHHHHHHHHHC--
T ss_pred ------------------------HcCC---CEEEEECchHHcC---CCCCEEEEcCCCccccCCchHHHHHHHHHhc--
Confidence 4333 4889999998864 4799999987665543 3457888898888
Q ss_pred CcEEEEEec-CH---HHHHHHHHHCCCceEEEEEecCc
Q psy1420 198 GGRFLCLEF-SH---EEFKSMIESAGFQYVTYENLTFG 231 (241)
Q Consensus 198 gG~l~i~~~-~~---~~~~~~l~~~Gf~~~~~~~~~~~ 231 (241)
|+.+ +... .. +.+.+.+++.||++..+....++
T Consensus 142 ~~~~-~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~ 178 (207)
T 1wy7_A 142 DVVY-SIHLAKPEVRRFIEKFSWEHGFVVTHRLTTKIE 178 (207)
T ss_dssp SEEE-EEEECCHHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred CcEE-EEEeCCcCCHHHHHHHHHHCCCeEEEEEEEecC
Confidence 5544 4332 22 66778889999988777665544
No 189
>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}
Probab=99.21 E-value=9.1e-11 Score=109.15 Aligned_cols=135 Identities=19% Similarity=0.270 Sum_probs=100.0
Q ss_pred HHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHH
Q psy1420 35 FIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLE 114 (241)
Q Consensus 35 ~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~ 114 (241)
....+.+.++.+|||+|||+|..+ ..++..++ ....++++|+++.+++.++
T Consensus 251 ~~~~l~~~~g~~VLDlgaG~G~~t-------------~~la~~~~----------------~~~~v~a~D~s~~~l~~~~ 301 (450)
T 2yxl_A 251 ASIVLDPKPGETVVDLAAAPGGKT-------------THLAELMK----------------NKGKIYAFDVDKMRMKRLK 301 (450)
T ss_dssp HHHHHCCCTTCEEEESSCTTCHHH-------------HHHHHHTT----------------TCSEEEEECSCHHHHHHHH
T ss_pred HHHhcCCCCcCEEEEeCCCccHHH-------------HHHHHHcC----------------CCCEEEEEcCCHHHHHHHH
Confidence 344567788899999999999988 44444111 2368999999999999999
Q ss_pred HHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCC--CCCCceeEEeee------ehhhccccH--
Q psy1420 115 ANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELP--IESDSYSAYTIA------FGIRNVTRI-- 184 (241)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~D~V~~~------~~l~~~~~~-- 184 (241)
+++. +.++. ++.+.++|+...+ ++.++||+|++. ..++..++.
T Consensus 302 ~~~~-------------------------~~g~~--~v~~~~~D~~~~~~~~~~~~fD~Vl~D~Pcsg~g~~~~~pd~~~ 354 (450)
T 2yxl_A 302 DFVK-------------------------RMGIK--IVKPLVKDARKAPEIIGEEVADKVLLDAPCTSSGTIGKNPELRW 354 (450)
T ss_dssp HHHH-------------------------HTTCC--SEEEECSCTTCCSSSSCSSCEEEEEEECCCCCGGGTTTSTTHHH
T ss_pred HHHH-------------------------HcCCC--cEEEEEcChhhcchhhccCCCCEEEEcCCCCCCeeeccChhhhh
Confidence 9988 55654 6889999988775 444689999962 223333332
Q ss_pred --------------HHHHHHHHHhccCCcEEEEEecCH------HHHHHHHHHC-CCceEEE
Q psy1420 185 --------------DKALSEAYRVLKPGGRFLCLEFSH------EEFKSMIESA-GFQYVTY 225 (241)
Q Consensus 185 --------------~~~l~~~~~~LkpgG~l~i~~~~~------~~~~~~l~~~-Gf~~~~~ 225 (241)
..+++.+.++|||||++++++.+. +.+..++++. ||..+..
T Consensus 355 ~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~~~~ene~~v~~~l~~~~~~~~~~~ 416 (450)
T 2yxl_A 355 RLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSIFKEENEKNIRWFLNVHPEFKLVPL 416 (450)
T ss_dssp HCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCCGGGTHHHHHHHHHHCSSCEECCC
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhHHHHHHHHHHhCCCCEEeec
Confidence 578999999999999999877554 4567778776 6877654
No 190
>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E
Probab=99.19 E-value=1.2e-10 Score=99.28 Aligned_cols=116 Identities=22% Similarity=0.265 Sum_probs=85.8
Q ss_pred CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCC
Q psy1420 42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP 121 (241)
Q Consensus 42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~ 121 (241)
.++.+|||+|||+|.++ ..++. . .....++++|+++.+++.+++++.
T Consensus 48 ~~~~~vLDiGcG~G~~~-------------~~la~----~-------------~~~~~v~gvD~s~~~l~~a~~~~~--- 94 (246)
T 2vdv_E 48 TKKVTIADIGCGFGGLM-------------IDLSP----A-------------FPEDLILGMEIRVQVTNYVEDRII--- 94 (246)
T ss_dssp SCCEEEEEETCTTSHHH-------------HHHHH----H-------------STTSEEEEEESCHHHHHHHHHHHH---
T ss_pred CCCCEEEEEcCCCCHHH-------------HHHHH----h-------------CCCCCEEEEEcCHHHHHHHHHHHH---
Confidence 46779999999999988 44443 1 024579999999999999988776
Q ss_pred Cccccccccceecceeeeeecccc--------CCCCCCeeEEecccCC-CC--CCCCceeEEeeeehhhccccH------
Q psy1420 122 IESDSYSAYTIAFGIRNVTRIDKI--------DIPNPRLRFLEANAEE-LP--IESDSYSAYTIAFGIRNVTRI------ 184 (241)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~d~~~-~~--~~~~~~D~V~~~~~l~~~~~~------ 184 (241)
.. ++. +++++.+|+.. ++ ++.+++|.|+..+ +++
T Consensus 95 ----------------------~~~~~~~~~~~~~--nv~~~~~D~~~~l~~~~~~~~~d~v~~~~-----p~p~~k~~~ 145 (246)
T 2vdv_E 95 ----------------------ALRNNTASKHGFQ--NINVLRGNAMKFLPNFFEKGQLSKMFFCF-----PDPHFKQRK 145 (246)
T ss_dssp ----------------------HHHHTC-CCSTTT--TEEEEECCTTSCGGGTSCTTCEEEEEEES-----CCCC-----
T ss_pred ----------------------HHhhccccccCCC--cEEEEeccHHHHHHHhccccccCEEEEEC-----CCcccccch
Confidence 22 333 68999999886 55 5567899998543 333
Q ss_pred -------HHHHHHHHHhccCCcEEEEEecCH---HHHHHHHHHCC
Q psy1420 185 -------DKALSEAYRVLKPGGRFLCLEFSH---EEFKSMIESAG 219 (241)
Q Consensus 185 -------~~~l~~~~~~LkpgG~l~i~~~~~---~~~~~~l~~~G 219 (241)
..+++++.++|+|||+|++.+-.. +.+.+.+...|
T Consensus 146 ~~~r~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~~ 190 (246)
T 2vdv_E 146 HKARIITNTLLSEYAYVLKEGGVVYTITDVKDLHEWMVKHLEEHP 190 (246)
T ss_dssp -CSSCCCHHHHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHHHST
T ss_pred hHHhhccHHHHHHHHHHcCCCCEEEEEeccHHHHHHHHHHHHhCc
Confidence 489999999999999999865444 44555666666
No 191
>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*
Probab=99.19 E-value=1.3e-11 Score=105.35 Aligned_cols=120 Identities=10% Similarity=0.024 Sum_probs=86.0
Q ss_pred CCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCC
Q psy1420 43 HDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPI 122 (241)
Q Consensus 43 ~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~ 122 (241)
++.+|||+|||+|..+ ..++. .+..- ....+++++|+++.+++.++ ...
T Consensus 81 ~~~~VLDiG~GtG~~t-------------~~la~----~~~~~---------~~~~~V~gvD~s~~~l~~a~-~~~---- 129 (236)
T 2bm8_A 81 RPRTIVELGVYNGGSL-------------AWFRD----LTKIM---------GIDCQVIGIDRDLSRCQIPA-SDM---- 129 (236)
T ss_dssp CCSEEEEECCTTSHHH-------------HHHHH----HHHHT---------TCCCEEEEEESCCTTCCCCG-GGC----
T ss_pred CCCEEEEEeCCCCHHH-------------HHHHH----hhhhc---------CCCCEEEEEeCChHHHHHHh-ccC----
Confidence 4579999999999988 33333 10000 03568999999999877654 111
Q ss_pred ccccccccceecceeeeeeccccCCCCCCeeEEecccCCC---CCCC-CceeEEeeeehhhccccHHHHHHHHHH-hccC
Q psy1420 123 ESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL---PIES-DSYSAYTIAFGIRNVTRIDKALSEAYR-VLKP 197 (241)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~~-~~~D~V~~~~~l~~~~~~~~~l~~~~~-~Lkp 197 (241)
++++++++|+... +... .+||+|++... + .+...++.++.+ +|||
T Consensus 130 ---------------------------~~v~~~~gD~~~~~~l~~~~~~~fD~I~~d~~-~--~~~~~~l~~~~r~~Lkp 179 (236)
T 2bm8_A 130 ---------------------------ENITLHQGDCSDLTTFEHLREMAHPLIFIDNA-H--ANTFNIMKWAVDHLLEE 179 (236)
T ss_dssp ---------------------------TTEEEEECCSSCSGGGGGGSSSCSSEEEEESS-C--SSHHHHHHHHHHHTCCT
T ss_pred ---------------------------CceEEEECcchhHHHHHhhccCCCCEEEECCc-h--HhHHHHHHHHHHhhCCC
Confidence 3688999998874 4333 37999997665 2 377889999997 9999
Q ss_pred CcEEEEEec-------CHHHHHHHHHHC--CCceE
Q psy1420 198 GGRFLCLEF-------SHEEFKSMIESA--GFQYV 223 (241)
Q Consensus 198 gG~l~i~~~-------~~~~~~~~l~~~--Gf~~~ 223 (241)
||++++.+. ..+.+.+++++. +|..+
T Consensus 180 GG~lv~~d~~~~~~~~~~~~~~~~l~~~~~~f~~~ 214 (236)
T 2bm8_A 180 GDYFIIEDMIPYWYRYAPQLFSEYLGAFRDVLSMD 214 (236)
T ss_dssp TCEEEECSCHHHHHHHCHHHHHHHHHTTTTTEEEE
T ss_pred CCEEEEEeCcccccccCHHHHHHHHHhCcccEEEc
Confidence 999999643 336788888888 56654
No 192
>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}
Probab=99.18 E-value=4.4e-11 Score=100.09 Aligned_cols=118 Identities=11% Similarity=0.107 Sum_probs=84.0
Q ss_pred HHHHhhc--CCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhH
Q psy1420 33 DIFIDRL--GPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRL 110 (241)
Q Consensus 33 ~~~~~~l--~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~ 110 (241)
..+++.+ ..+++.+|||+|||+|..+ ..++. ...... ....+++++|+++.++
T Consensus 68 ~~~~~~l~~~~~~~~~VLdiG~G~G~~~-------------~~la~----~~~~~~--------~~~~~v~~vD~~~~~~ 122 (227)
T 2pbf_A 68 ALSLKRLINVLKPGSRAIDVGSGSGYLT-------------VCMAI----KMNVLE--------NKNSYVIGLERVKDLV 122 (227)
T ss_dssp HHHHHHHTTTSCTTCEEEEESCTTSHHH-------------HHHHH----HTTTTT--------CTTCEEEEEESCHHHH
T ss_pred HHHHHHHHhhCCCCCEEEEECCCCCHHH-------------HHHHH----HhcccC--------CCCCEEEEEeCCHHHH
Confidence 3444554 3567889999999999988 43333 110000 0135899999999999
Q ss_pred HHHHHHHhcCCCccccccccceecceeeeeeccccCC---CCCCeeEEecccCCCC----CCCCceeEEeeeehhhcccc
Q psy1420 111 RFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDI---PNPRLRFLEANAEELP----IESDSYSAYTIAFGIRNVTR 183 (241)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~d~~~~~----~~~~~~D~V~~~~~l~~~~~ 183 (241)
+.++++.. ..++ ...++++..+|+.... ...++||+|++...++++
T Consensus 123 ~~a~~~~~-------------------------~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~I~~~~~~~~~-- 175 (227)
T 2pbf_A 123 NFSLENIK-------------------------RDKPELLKIDNFKIIHKNIYQVNEEEKKELGLFDAIHVGASASEL-- 175 (227)
T ss_dssp HHHHHHHH-------------------------HHCGGGGSSTTEEEEECCGGGCCHHHHHHHCCEEEEEECSBBSSC--
T ss_pred HHHHHHHH-------------------------HcCccccccCCEEEEECChHhcccccCccCCCcCEEEECCchHHH--
Confidence 99998876 3331 0136889999988754 445689999998887754
Q ss_pred HHHHHHHHHHhccCCcEEEEEec
Q psy1420 184 IDKALSEAYRVLKPGGRFLCLEF 206 (241)
Q Consensus 184 ~~~~l~~~~~~LkpgG~l~i~~~ 206 (241)
++.+.++|||||++++...
T Consensus 176 ----~~~~~~~LkpgG~lv~~~~ 194 (227)
T 2pbf_A 176 ----PEILVDLLAENGKLIIPIE 194 (227)
T ss_dssp ----CHHHHHHEEEEEEEEEEEE
T ss_pred ----HHHHHHhcCCCcEEEEEEc
Confidence 4778999999999988643
No 193
>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*
Probab=99.17 E-value=1.1e-10 Score=102.39 Aligned_cols=85 Identities=14% Similarity=0.051 Sum_probs=67.1
Q ss_pred cCCCceeecCChHhHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCC----C--CCce
Q psy1420 96 IRQFPNQIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPI----E--SDSY 169 (241)
Q Consensus 96 ~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~----~--~~~~ 169 (241)
+..+++++|.|+.|++.+++++. .. +..+++++++|+..++. + ...|
T Consensus 104 P~arVv~VD~sp~mLa~Ar~~l~-------------------------~~--~~~~~~~v~aD~~~~~~~l~~~~~~~~~ 156 (277)
T 3giw_A 104 PESRVVYVDNDPIVLTLSQGLLA-------------------------ST--PEGRTAYVEADMLDPASILDAPELRDTL 156 (277)
T ss_dssp TTCEEEEEECCHHHHHTTHHHHC-------------------------CC--SSSEEEEEECCTTCHHHHHTCHHHHTTC
T ss_pred CCCEEEEEeCChHHHHHHHHHhc-------------------------cC--CCCcEEEEEecccChhhhhccccccccc
Confidence 35789999999999999998876 21 11368999999987521 1 2345
Q ss_pred e-----EEeeeehhhcccc---HHHHHHHHHHhccCCcEEEEEecC
Q psy1420 170 S-----AYTIAFGIRNVTR---IDKALSEAYRVLKPGGRFLCLEFS 207 (241)
Q Consensus 170 D-----~V~~~~~l~~~~~---~~~~l~~~~~~LkpgG~l~i~~~~ 207 (241)
| .|+++.++|++++ +..+++++.+.|+|||+|++.++.
T Consensus 157 D~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~~~ 202 (277)
T 3giw_A 157 DLTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMSIGT 202 (277)
T ss_dssp CTTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEEEEC
T ss_pred CcCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEEEEecc
Confidence 4 5888999999988 568999999999999999998644
No 194
>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}
Probab=99.17 E-value=1.8e-10 Score=100.22 Aligned_cols=106 Identities=12% Similarity=0.172 Sum_probs=84.0
Q ss_pred CCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcC
Q psy1420 41 PTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEEL 120 (241)
Q Consensus 41 ~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~ 120 (241)
..++.+|||+|||+|.++ ..++. .. ...+++++|+++.+++.+++++.
T Consensus 117 ~~~~~~VLDlgcG~G~~s-------------~~la~----~~-------------~~~~V~~vD~s~~av~~a~~n~~-- 164 (272)
T 3a27_A 117 SNENEVVVDMFAGIGYFT-------------IPLAK----YS-------------KPKLVYAIEKNPTAYHYLCENIK-- 164 (272)
T ss_dssp CCTTCEEEETTCTTTTTH-------------HHHHH----HT-------------CCSEEEEEECCHHHHHHHHHHHH--
T ss_pred cCCCCEEEEecCcCCHHH-------------HHHHH----hC-------------CCCEEEEEeCCHHHHHHHHHHHH--
Confidence 467889999999999998 44443 00 23589999999999999999988
Q ss_pred CCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHHHHHHhccCCcE
Q psy1420 121 PIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGR 200 (241)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~ 200 (241)
..++. ++.++++|+...+. .++||+|++.... ....++..+.+.|+|||+
T Consensus 165 -----------------------~n~l~--~~~~~~~d~~~~~~-~~~~D~Vi~d~p~----~~~~~l~~~~~~LkpgG~ 214 (272)
T 3a27_A 165 -----------------------LNKLN--NVIPILADNRDVEL-KDVADRVIMGYVH----KTHKFLDKTFEFLKDRGV 214 (272)
T ss_dssp -----------------------HTTCS--SEEEEESCGGGCCC-TTCEEEEEECCCS----SGGGGHHHHHHHEEEEEE
T ss_pred -----------------------HcCCC--CEEEEECChHHcCc-cCCceEEEECCcc----cHHHHHHHHHHHcCCCCE
Confidence 55554 57899999988743 5689999986543 566789999999999999
Q ss_pred EEEEecCH
Q psy1420 201 FLCLEFSH 208 (241)
Q Consensus 201 l~i~~~~~ 208 (241)
+++..+..
T Consensus 215 l~~s~~~~ 222 (272)
T 3a27_A 215 IHYHETVA 222 (272)
T ss_dssp EEEEEEEE
T ss_pred EEEEEcCc
Confidence 99876644
No 195
>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7
Probab=99.16 E-value=6.8e-11 Score=99.27 Aligned_cols=119 Identities=17% Similarity=0.177 Sum_probs=83.7
Q ss_pred HHHHHhhc--CCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHh
Q psy1420 32 KDIFIDRL--GPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPR 109 (241)
Q Consensus 32 ~~~~~~~l--~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~ 109 (241)
...+++.+ ...++.+|||+|||+|..+ ..++..++ .... ....+++++|+++.+
T Consensus 71 ~~~~~~~l~~~~~~~~~VLdiG~G~G~~~-------------~~la~~~~----~~~~-------~~~~~v~~vD~~~~~ 126 (227)
T 1r18_A 71 HAFALEYLRDHLKPGARILDVGSGSGYLT-------------ACFYRYIK----AKGV-------DADTRIVGIEHQAEL 126 (227)
T ss_dssp HHHHHHHTTTTCCTTCEEEEESCTTSHHH-------------HHHHHHHH----HSCC-------CTTCEEEEEESCHHH
T ss_pred HHHHHHHHHhhCCCCCEEEEECCCccHHH-------------HHHHHhcc----cccC-------CccCEEEEEEcCHHH
Confidence 34555555 3577889999999999988 44433111 0000 012479999999999
Q ss_pred HHHHHHHHhcCCCccccccccceecceeeeeeccccCC---CCCCeeEEecccCCCCCCC-CceeEEeeeehhhccccHH
Q psy1420 110 LRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDI---PNPRLRFLEANAEELPIES-DSYSAYTIAFGIRNVTRID 185 (241)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~d~~~~~~~~-~~~D~V~~~~~l~~~~~~~ 185 (241)
++.+++++. ..+. ...++++..+|... +.+. ++||+|++...++++.
T Consensus 127 ~~~a~~~~~-------------------------~~~~~~~~~~~v~~~~~d~~~-~~~~~~~fD~I~~~~~~~~~~--- 177 (227)
T 1r18_A 127 VRRSKANLN-------------------------TDDRSMLDSGQLLIVEGDGRK-GYPPNAPYNAIHVGAAAPDTP--- 177 (227)
T ss_dssp HHHHHHHHH-------------------------HHHHHHHHHTSEEEEESCGGG-CCGGGCSEEEEEECSCBSSCC---
T ss_pred HHHHHHHHH-------------------------hcCccccCCCceEEEECCccc-CCCcCCCccEEEECCchHHHH---
Confidence 999998876 2220 00368888999876 3333 6899999998887754
Q ss_pred HHHHHHHHhccCCcEEEEEec
Q psy1420 186 KALSEAYRVLKPGGRFLCLEF 206 (241)
Q Consensus 186 ~~l~~~~~~LkpgG~l~i~~~ 206 (241)
+++.+.|||||++++...
T Consensus 178 ---~~~~~~LkpgG~lvi~~~ 195 (227)
T 1r18_A 178 ---TELINQLASGGRLIVPVG 195 (227)
T ss_dssp ---HHHHHTEEEEEEEEEEES
T ss_pred ---HHHHHHhcCCCEEEEEEe
Confidence 678999999999998654
No 196
>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}
Probab=99.16 E-value=8.3e-12 Score=106.88 Aligned_cols=107 Identities=12% Similarity=0.028 Sum_probs=82.5
Q ss_pred CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCC
Q psy1420 42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP 121 (241)
Q Consensus 42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~ 121 (241)
.++.+|||+|||+|..+ ..++..++ ...+++++|+++.+++.+++++.
T Consensus 59 ~~~~~VLDiG~G~G~~t-------------~~la~~~~----------------~~~~v~~iD~~~~~~~~a~~~~~--- 106 (242)
T 3r3h_A 59 TRAKKVLELGTFTGYSA-------------LAMSLALP----------------DDGQVITCDINEGWTKHAHPYWR--- 106 (242)
T ss_dssp HTCSEEEEEESCCSHHH-------------HHHHHTSC----------------TTCEEEEEECCCSSCCCSHHHHH---
T ss_pred cCcCEEEEeeCCcCHHH-------------HHHHHhCC----------------CCCEEEEEECCHHHHHHHHHHHH---
Confidence 45679999999999988 43333110 25689999999999999999887
Q ss_pred CccccccccceecceeeeeeccccCCCCCCeeEEecccCCC-CCC-----CCceeEEeeeehhhccccHHHHHHHHHHhc
Q psy1420 122 IESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL-PIE-----SDSYSAYTIAFGIRNVTRIDKALSEAYRVL 195 (241)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~-----~~~~D~V~~~~~l~~~~~~~~~l~~~~~~L 195 (241)
+.++. ++++++.+|+.+. +.. .++||+|++... ..+....++++.++|
T Consensus 107 ----------------------~~g~~-~~i~~~~gda~~~l~~~~~~~~~~~fD~V~~d~~---~~~~~~~l~~~~~~L 160 (242)
T 3r3h_A 107 ----------------------EAKQE-HKIKLRLGPALDTLHSLLNEGGEHQFDFIFIDAD---KTNYLNYYELALKLV 160 (242)
T ss_dssp ----------------------HTTCT-TTEEEEESCHHHHHHHHHHHHCSSCEEEEEEESC---GGGHHHHHHHHHHHE
T ss_pred ----------------------HcCCC-CcEEEEEcCHHHHHHHHhhccCCCCEeEEEEcCC---hHHhHHHHHHHHHhc
Confidence 55665 5799999998654 211 468999998654 456678899999999
Q ss_pred cCCcEEEEEec
Q psy1420 196 KPGGRFLCLEF 206 (241)
Q Consensus 196 kpgG~l~i~~~ 206 (241)
+|||++++-+.
T Consensus 161 kpGG~lv~d~~ 171 (242)
T 3r3h_A 161 TPKGLIAIDNI 171 (242)
T ss_dssp EEEEEEEEECS
T ss_pred CCCeEEEEECC
Confidence 99999998543
No 197
>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}
Probab=99.16 E-value=2.9e-10 Score=103.14 Aligned_cols=126 Identities=10% Similarity=0.091 Sum_probs=93.1
Q ss_pred CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCC
Q psy1420 42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP 121 (241)
Q Consensus 42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~ 121 (241)
.++.+|||+| |+|.++ ..+.. . . ...+++++|+++.+++.+++++.
T Consensus 171 ~~~~~VLDlG-G~G~~~-------------~~la~----~---~----------~~~~v~~vDi~~~~l~~a~~~~~--- 216 (373)
T 2qm3_A 171 LENKDIFVLG-DDDLTS-------------IALML----S---G----------LPKRIAVLDIDERLTKFIEKAAN--- 216 (373)
T ss_dssp STTCEEEEES-CTTCHH-------------HHHHH----H---T----------CCSEEEEECSCHHHHHHHHHHHH---
T ss_pred CCCCEEEEEC-CCCHHH-------------HHHHH----h---C----------CCCEEEEEECCHHHHHHHHHHHH---
Confidence 4678999999 999988 33332 0 0 23589999999999999999988
Q ss_pred CccccccccceecceeeeeeccccCCCCCCeeEEecccCC-CCC-CCCceeEEeeeehhhccccHHHHHHHHHHhccCCc
Q psy1420 122 IESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEE-LPI-ESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGG 199 (241)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~-~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG 199 (241)
+.++. +++++.+|+.. +|. ..++||+|+++..++.. ....+++++.++|||||
T Consensus 217 ----------------------~~g~~--~v~~~~~D~~~~l~~~~~~~fD~Vi~~~p~~~~-~~~~~l~~~~~~LkpgG 271 (373)
T 2qm3_A 217 ----------------------EIGYE--DIEIFTFDLRKPLPDYALHKFDTFITDPPETLE-AIRAFVGRGIATLKGPR 271 (373)
T ss_dssp ----------------------HHTCC--CEEEECCCTTSCCCTTTSSCBSEEEECCCSSHH-HHHHHHHHHHHTBCSTT
T ss_pred ----------------------HcCCC--CEEEEEChhhhhchhhccCCccEEEECCCCchH-HHHHHHHHHHHHcccCC
Confidence 55654 68999999988 653 34689999997554333 25889999999999999
Q ss_pred EE-EEEecC----H---HHHHHHHH-HCCCceEEEE
Q psy1420 200 RF-LCLEFS----H---EEFKSMIE-SAGFQYVTYE 226 (241)
Q Consensus 200 ~l-~i~~~~----~---~~~~~~l~-~~Gf~~~~~~ 226 (241)
++ ++.... . ..+.+.+. ..||......
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~ 307 (373)
T 2qm3_A 272 CAGYFGITRRESSLDKWREIQKLLLNEFNVVITDII 307 (373)
T ss_dssp CEEEEEECTTTCCHHHHHHHHHHHHHTSCCEEEEEE
T ss_pred eEEEEEEecCcCCHHHHHHHHHHHHHhcCcchhhhh
Confidence 54 443332 2 56677787 8999775543
No 198
>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}
Probab=99.16 E-value=2.7e-11 Score=100.41 Aligned_cols=105 Identities=10% Similarity=0.057 Sum_probs=79.8
Q ss_pred CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCC
Q psy1420 42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP 121 (241)
Q Consensus 42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~ 121 (241)
.++.+|||+|||+|..+ ..++. .+ + ...+++++|+++.+++.+++++.
T Consensus 55 ~~~~~vLdiG~G~G~~~-------------~~la~----~~---~---------~~~~v~~vD~~~~~~~~a~~~~~--- 102 (210)
T 3c3p_A 55 KQPQLVVVPGDGLGCAS-------------WWFAR----AI---S---------ISSRVVMIDPDRDNVEHARRMLH--- 102 (210)
T ss_dssp HCCSEEEEESCGGGHHH-------------HHHHT----TS---C---------TTCEEEEEESCHHHHHHHHHHHH---
T ss_pred hCCCEEEEEcCCccHHH-------------HHHHH----hC---C---------CCCEEEEEECCHHHHHHHHHHHH---
Confidence 35669999999999988 44333 10 0 25689999999999999998877
Q ss_pred CccccccccceecceeeeeeccccCCCCCCeeEEecccCCC-CCCCCceeEEeeeehhhccccHHHHHHHHHHhccCCcE
Q psy1420 122 IESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL-PIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGR 200 (241)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~ 200 (241)
..++. ++++++.+|+.+. +...+ ||+|++... ..+...+++++.++|||||+
T Consensus 103 ----------------------~~~~~-~~v~~~~~d~~~~~~~~~~-fD~v~~~~~---~~~~~~~l~~~~~~LkpgG~ 155 (210)
T 3c3p_A 103 ----------------------DNGLI-DRVELQVGDPLGIAAGQRD-IDILFMDCD---VFNGADVLERMNRCLAKNAL 155 (210)
T ss_dssp ----------------------HHSGG-GGEEEEESCHHHHHTTCCS-EEEEEEETT---TSCHHHHHHHHGGGEEEEEE
T ss_pred ----------------------HCCCC-ceEEEEEecHHHHhccCCC-CCEEEEcCC---hhhhHHHHHHHHHhcCCCeE
Confidence 44443 4688999998653 43345 999998632 45678999999999999999
Q ss_pred EEEEe
Q psy1420 201 FLCLE 205 (241)
Q Consensus 201 l~i~~ 205 (241)
+++.+
T Consensus 156 lv~~~ 160 (210)
T 3c3p_A 156 LIAVN 160 (210)
T ss_dssp EEEES
T ss_pred EEEEC
Confidence 98843
No 199
>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}
Probab=99.15 E-value=6.4e-11 Score=111.25 Aligned_cols=113 Identities=15% Similarity=0.172 Sum_probs=87.2
Q ss_pred HHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHH
Q psy1420 32 KDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLR 111 (241)
Q Consensus 32 ~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~ 111 (241)
.+.+++.+...++.+|||+|||+|..+ ..++. ....+++++|+++ +++
T Consensus 147 ~~~il~~l~~~~~~~VLDiGcGtG~la-------------~~la~------------------~~~~~V~gvD~s~-~l~ 194 (480)
T 3b3j_A 147 QRAILQNHTDFKDKIVLDVGCGSGILS-------------FFAAQ------------------AGARKIYAVEAST-MAQ 194 (480)
T ss_dssp HHHHHHTGGGTTTCEEEEESCSTTHHH-------------HHHHH------------------TTCSEEEEEECHH-HHH
T ss_pred HHHHHHhhhhcCCCEEEEecCcccHHH-------------HHHHH------------------cCCCEEEEEEcHH-HHH
Confidence 455566665567789999999999987 32222 1245899999998 999
Q ss_pred HHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccc--cHHHHHH
Q psy1420 112 FLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVT--RIDKALS 189 (241)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~--~~~~~l~ 189 (241)
.+++++. ..++. ++++++.+|+.+.+.+ ++||+|++...++++. +....+.
T Consensus 195 ~A~~~~~-------------------------~~gl~-~~v~~~~~d~~~~~~~-~~fD~Ivs~~~~~~~~~e~~~~~l~ 247 (480)
T 3b3j_A 195 HAEVLVK-------------------------SNNLT-DRIVVIPGKVEEVSLP-EQVDIIISEPMGYMLFNERMLESYL 247 (480)
T ss_dssp HHHHHHH-------------------------HTTCT-TTEEEEESCTTTCCCS-SCEEEEECCCCHHHHTCHHHHHHHH
T ss_pred HHHHHHH-------------------------HcCCC-CcEEEEECchhhCccC-CCeEEEEEeCchHhcCcHHHHHHHH
Confidence 9998887 55664 5799999999987654 5899999987766553 4467788
Q ss_pred HHHHhccCCcEEEE
Q psy1420 190 EAYRVLKPGGRFLC 203 (241)
Q Consensus 190 ~~~~~LkpgG~l~i 203 (241)
.+.++|||||++++
T Consensus 248 ~~~~~LkpgG~li~ 261 (480)
T 3b3j_A 248 HAKKYLKPSGNMFP 261 (480)
T ss_dssp HGGGGEEEEEEEES
T ss_pred HHHHhcCCCCEEEE
Confidence 89999999999984
No 200
>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A
Probab=99.15 E-value=1.1e-10 Score=101.44 Aligned_cols=135 Identities=13% Similarity=0.171 Sum_probs=97.1
Q ss_pred HHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHH
Q psy1420 35 FIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLE 114 (241)
Q Consensus 35 ~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~ 114 (241)
+...+.+.++.+|||+|||+|..+ ..++. .+. ....++++|+++.+++.++
T Consensus 75 ~~~~l~~~~g~~VLDlgaG~G~~t-------------~~la~----~~~------------~~~~v~avD~~~~~l~~~~ 125 (274)
T 3ajd_A 75 PPIVLNPREDDFILDMCAAPGGKT-------------THLAQ----LMK------------NKGTIVAVEISKTRTKALK 125 (274)
T ss_dssp HHHHHCCCTTCEEEETTCTTCHHH-------------HHHHH----HTT------------TCSEEEEEESCHHHHHHHH
T ss_pred HHHHhCCCCcCEEEEeCCCccHHH-------------HHHHH----HcC------------CCCEEEEECCCHHHHHHHH
Confidence 344556788899999999999988 44443 110 2368999999999999999
Q ss_pred HHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCC----CCCceeEEeeeeh------hh-----
Q psy1420 115 ANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPI----ESDSYSAYTIAFG------IR----- 179 (241)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~----~~~~~D~V~~~~~------l~----- 179 (241)
+++. ..++. ++++.+.|+...+. ..++||+|++.-. ++
T Consensus 126 ~~~~-------------------------~~g~~--~v~~~~~D~~~~~~~~~~~~~~fD~Vl~d~Pcs~~g~~~~~p~~ 178 (274)
T 3ajd_A 126 SNIN-------------------------RMGVL--NTIIINADMRKYKDYLLKNEIFFDKILLDAPCSGNIIKDKNRNV 178 (274)
T ss_dssp HHHH-------------------------HTTCC--SEEEEESCHHHHHHHHHHTTCCEEEEEEEECCC-----------
T ss_pred HHHH-------------------------HhCCC--cEEEEeCChHhcchhhhhccccCCEEEEcCCCCCCcccccCCCC
Confidence 9988 55554 68899999877643 2568999998621 11
Q ss_pred -------ccccHHHHHHHHHHhccCCcEEEEEecCH------HHHHHHHHHC-CCceEEE
Q psy1420 180 -------NVTRIDKALSEAYRVLKPGGRFLCLEFSH------EEFKSMIESA-GFQYVTY 225 (241)
Q Consensus 180 -------~~~~~~~~l~~~~~~LkpgG~l~i~~~~~------~~~~~~l~~~-Gf~~~~~ 225 (241)
......++++.+.++|||||++++.+.+. +.+..++++. +|+++..
T Consensus 179 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs~~~~ene~~v~~~l~~~~~~~~~~~ 238 (274)
T 3ajd_A 179 SEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSMEVEENEEVIKYILQKRNDVELIII 238 (274)
T ss_dssp -HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESCCCTTSSHHHHHHHHHHCSSEEEECC
T ss_pred CHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCChHHhHHHHHHHHHhCCCcEEecC
Confidence 11345789999999999999999876543 4556666554 4665543
No 201
>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*
Probab=99.15 E-value=2.4e-11 Score=111.56 Aligned_cols=132 Identities=10% Similarity=0.130 Sum_probs=89.3
Q ss_pred HHhhhhhccccchhhhhhhhHHHHHHHHHhhcCCCCCCeEEEEecC------CCcchhHHHHHHhhhhhhhhhhhhhhhh
Q psy1420 8 VFENVAKSYDTMNDAMSFGIHRLWKDIFIDRLGPTHDTKLLDVAGG------TDPLANLLFVLRAYDQYSFQVIPVMGQL 81 (241)
Q Consensus 8 ~f~~~~~~yd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vLdvG~G------~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (241)
.|++++..|++-......... ...+.++..+.. ++.+|||+||| +|..+ ..++.. +
T Consensus 183 ~fd~lA~~Y~tDK~~~~h~y~-~~Ye~lL~~l~~-~~~rVLDIGCG~~~~~~TGG~S-------------l~la~~---~ 244 (419)
T 3sso_A 183 DLSELSSRYFTPKFGFLHWFT-PHYDRHFRDYRN-QQVRVLEIGVGGYKHPEWGGGS-------------LRMWKS---F 244 (419)
T ss_dssp CHHHHHHHTTCTTBSSSCBCH-HHHHHHHGGGTT-SCCEEEEECCSCTTCSSCCCHH-------------HHHHHH---H
T ss_pred cHHHHHHHhCCCcccccchHH-HHHHHHHHhhcC-CCCEEEEEecCCCcCCCCCHHH-------------HHHHHH---h
Confidence 466777777542111011111 233444444443 45799999999 66665 222220 0
Q ss_pred hhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCC
Q psy1420 82 IAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEE 161 (241)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 161 (241)
.+..+++++|+++.|. .. .++++++++|+.+
T Consensus 245 -------------fP~a~V~GVDiSp~m~------~~------------------------------~~rI~fv~GDa~d 275 (419)
T 3sso_A 245 -------------FPRGQIYGLDIMDKSH------VD------------------------------ELRIRTIQGDQND 275 (419)
T ss_dssp -------------CTTCEEEEEESSCCGG------GC------------------------------BTTEEEEECCTTC
T ss_pred -------------CCCCEEEEEECCHHHh------hc------------------------------CCCcEEEEecccc
Confidence 0256899999999972 11 1468999999998
Q ss_pred CCCC------CCceeEEeeeehhhccccHHHHHHHHHHhccCCcEEEEEecC
Q psy1420 162 LPIE------SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFS 207 (241)
Q Consensus 162 ~~~~------~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 207 (241)
+++. .++||+|++.. .+++.+...+|++++++|||||++++.+..
T Consensus 276 lpf~~~l~~~d~sFDlVisdg-sH~~~d~~~aL~el~rvLKPGGvlVi~Dl~ 326 (419)
T 3sso_A 276 AEFLDRIARRYGPFDIVIDDG-SHINAHVRTSFAALFPHVRPGGLYVIEDMW 326 (419)
T ss_dssp HHHHHHHHHHHCCEEEEEECS-CCCHHHHHHHHHHHGGGEEEEEEEEEECGG
T ss_pred cchhhhhhcccCCccEEEECC-cccchhHHHHHHHHHHhcCCCeEEEEEecc
Confidence 8765 57899999864 567788899999999999999999997754
No 202
>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}
Probab=99.14 E-value=1e-10 Score=106.69 Aligned_cols=102 Identities=17% Similarity=0.225 Sum_probs=79.9
Q ss_pred CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCC
Q psy1420 42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP 121 (241)
Q Consensus 42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~ 121 (241)
.++.+|||||||+|.++ .-.+. ....+++++|.|+ +.+.|++.+.
T Consensus 82 ~~~k~VLDvG~GtGiLs-------------~~Aa~------------------aGA~~V~ave~s~-~~~~a~~~~~--- 126 (376)
T 4hc4_A 82 LRGKTVLDVGAGTGILS-------------IFCAQ------------------AGARRVYAVEASA-IWQQAREVVR--- 126 (376)
T ss_dssp HTTCEEEEETCTTSHHH-------------HHHHH------------------TTCSEEEEEECST-THHHHHHHHH---
T ss_pred cCCCEEEEeCCCccHHH-------------HHHHH------------------hCCCEEEEEeChH-HHHHHHHHHH---
Confidence 46789999999999877 22222 1235799999986 7888888887
Q ss_pred CccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeee---ehhhccccHHHHHHHHHHhccCC
Q psy1420 122 IESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIA---FGIRNVTRIDKALSEAYRVLKPG 198 (241)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~---~~l~~~~~~~~~l~~~~~~Lkpg 198 (241)
..++. +++++++++++++..+ +++|+|++- ..+.+-.....++....++||||
T Consensus 127 ----------------------~n~~~-~~i~~i~~~~~~~~lp-e~~DvivsE~~~~~l~~e~~l~~~l~a~~r~Lkp~ 182 (376)
T 4hc4_A 127 ----------------------FNGLE-DRVHVLPGPVETVELP-EQVDAIVSEWMGYGLLHESMLSSVLHARTKWLKEG 182 (376)
T ss_dssp ----------------------HTTCT-TTEEEEESCTTTCCCS-SCEEEEECCCCBTTBTTTCSHHHHHHHHHHHEEEE
T ss_pred ----------------------HcCCC-ceEEEEeeeeeeecCC-ccccEEEeecccccccccchhhhHHHHHHhhCCCC
Confidence 66766 6899999999998765 689999983 34445556788888899999999
Q ss_pred cEEE
Q psy1420 199 GRFL 202 (241)
Q Consensus 199 G~l~ 202 (241)
|.++
T Consensus 183 G~~i 186 (376)
T 4hc4_A 183 GLLL 186 (376)
T ss_dssp EEEE
T ss_pred ceEC
Confidence 9987
No 203
>3adn_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, polyamine biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} PDB: 3o4f_A
Probab=99.13 E-value=4.1e-10 Score=99.37 Aligned_cols=142 Identities=13% Similarity=0.170 Sum_probs=92.5
Q ss_pred CCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCC
Q psy1420 43 HDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPI 122 (241)
Q Consensus 43 ~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~ 122 (241)
++.+|||+|||+|..+ ..++. . ....+++++|+++.+++.+++++.
T Consensus 83 ~~~~VLdiG~G~G~~~-------------~~l~~--------~---------~~~~~V~~VDid~~vi~~ar~~~~---- 128 (294)
T 3adn_A 83 HAKHVLIIGGGDGAML-------------REVTR--------H---------KNVESITMVEIDAGVVSFCRQYLP---- 128 (294)
T ss_dssp TCCEEEEESCTTCHHH-------------HHHHT--------C---------TTCCEEEEECSCTTHHHHHHHHCH----
T ss_pred CCCEEEEEeCChhHHH-------------HHHHh--------C---------CCCCEEEEEECCHHHHHHHHHhhh----
Confidence 4569999999999988 44433 1 024679999999999999998765
Q ss_pred ccccccccceecceeeeeecccc---CCCCCCeeEEecccCCC-CCCCCceeEEeeeehhhccccH----HHHHHHHHHh
Q psy1420 123 ESDSYSAYTIAFGIRNVTRIDKI---DIPNPRLRFLEANAEEL-PIESDSYSAYTIAFGIRNVTRI----DKALSEAYRV 194 (241)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~d~~~~-~~~~~~~D~V~~~~~l~~~~~~----~~~l~~~~~~ 194 (241)
.. .+..++++++.+|+... +...++||+|++...-...+.. ..+++.+.++
T Consensus 129 ---------------------~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fDvIi~D~~~p~~~~~~l~~~~f~~~~~~~ 187 (294)
T 3adn_A 129 ---------------------NHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVIISDCTDPIGPGESLFTSAFYEGCKRC 187 (294)
T ss_dssp ---------------------HHHSSCTTCTTCCEECSCSCC---CCCCCEEEEEECC----------CCHHHHHHHHHT
T ss_pred ---------------------hcccccccCCceEEEEChHHHHHhhcCCCccEEEECCCCccCcchhccHHHHHHHHHHh
Confidence 21 12235789999997764 3345789999985443322221 6799999999
Q ss_pred ccCCcEEEEEecCH-------HHHHHHHHHCCCceEEEEEec-----CceeEEEeeec
Q psy1420 195 LKPGGRFLCLEFSH-------EEFKSMIESAGFQYVTYENLT-----FGVVAIHSGFK 240 (241)
Q Consensus 195 LkpgG~l~i~~~~~-------~~~~~~l~~~Gf~~~~~~~~~-----~~~~~~~~~~~ 240 (241)
|+|||++++...+. ..+.+.+++. |..+...... .|..+...+.|
T Consensus 188 LkpgG~lv~~~~s~~~~~~~~~~~~~~l~~~-F~~v~~~~~~vp~~p~g~~~f~~as~ 244 (294)
T 3adn_A 188 LNPGGIFVAQNGVCFLQQEEAIDSHRKLSHY-FSDVGFYQAAIPTYYGGIMTFAWATD 244 (294)
T ss_dssp EEEEEEEEEEEEECSSCCHHHHHHHHHHHHH-CSEEEEEEEECTTSSSSEEEEEEEES
T ss_pred cCCCCEEEEecCCcccchHHHHHHHHHHHHH-CCCeEEEEEEecccCCCceEEEEEeC
Confidence 99999999864221 3444445555 7666654432 35555555543
No 204
>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*
Probab=99.11 E-value=4.8e-10 Score=98.78 Aligned_cols=144 Identities=14% Similarity=0.093 Sum_probs=94.0
Q ss_pred CCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCC
Q psy1420 43 HDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPI 122 (241)
Q Consensus 43 ~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~ 122 (241)
++.+|||+|||+|..+ ..++. . ....+++++|+++.+++.+++++..+
T Consensus 90 ~~~~VLdiG~G~G~~~-------------~~l~~--------~---------~~~~~v~~vDid~~~~~~a~~~~~~~-- 137 (296)
T 1inl_A 90 NPKKVLIIGGGDGGTL-------------REVLK--------H---------DSVEKAILCEVDGLVIEAARKYLKQT-- 137 (296)
T ss_dssp SCCEEEEEECTTCHHH-------------HHHTT--------S---------TTCSEEEEEESCHHHHHHHHHHCHHH--
T ss_pred CCCEEEEEcCCcCHHH-------------HHHHh--------c---------CCCCEEEEEECCHHHHHHHHHHhHhh--
Confidence 4469999999999988 44433 0 02468999999999999999876410
Q ss_pred ccccccccceecceeeeeeccccCCCCCCeeEEecccCC-CCCCCCceeEEeeeehhhccc-----cHHHHHHHHHHhcc
Q psy1420 123 ESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEE-LPIESDSYSAYTIAFGIRNVT-----RIDKALSEAYRVLK 196 (241)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~D~V~~~~~l~~~~-----~~~~~l~~~~~~Lk 196 (241)
..++..++++++.+|+.. ++...++||+|++...-.+.. ....+++.+.++|+
T Consensus 138 ---------------------~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~d~~~~~~~~~~~l~~~~~l~~~~~~Lk 196 (296)
T 1inl_A 138 ---------------------SCGFDDPRAEIVIANGAEYVRKFKNEFDVIIIDSTDPTAGQGGHLFTEEFYQACYDALK 196 (296)
T ss_dssp ---------------------HGGGGCTTEEEEESCHHHHGGGCSSCEEEEEEEC----------CCSHHHHHHHHHHEE
T ss_pred ---------------------ccccCCCceEEEECcHHHHHhhCCCCceEEEEcCCCcccCchhhhhHHHHHHHHHHhcC
Confidence 011212478999999765 333356899999754322111 12688999999999
Q ss_pred CCcEEEEEecCH-------HHHHHHHHHCCCceEEEEEec-----CceeEEEeeec
Q psy1420 197 PGGRFLCLEFSH-------EEFKSMIESAGFQYVTYENLT-----FGVVAIHSGFK 240 (241)
Q Consensus 197 pgG~l~i~~~~~-------~~~~~~l~~~Gf~~~~~~~~~-----~~~~~~~~~~~ 240 (241)
|||++++...+. ..+.+.+++. |..+...... .|.-+...+.|
T Consensus 197 pgG~lv~~~~~~~~~~~~~~~~~~~l~~~-F~~v~~~~~~vp~~p~g~~~f~~as~ 251 (296)
T 1inl_A 197 EDGVFSAETEDPFYDIGWFKLAYRRISKV-FPITRVYLGFMTTYPSGMWSYTFASK 251 (296)
T ss_dssp EEEEEEEECCCTTTTHHHHHHHHHHHHHH-CSEEEEEEEECTTSTTSEEEEEEEES
T ss_pred CCcEEEEEccCcccCHHHHHHHHHHHHHH-CCceEEEEeecCccCCCceEEEEecC
Confidence 999999875432 4455556666 6666654432 35555555543
No 205
>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*
Probab=99.11 E-value=1.7e-10 Score=101.06 Aligned_cols=127 Identities=13% Similarity=0.155 Sum_probs=89.0
Q ss_pred HHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHH
Q psy1420 32 KDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLR 111 (241)
Q Consensus 32 ~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~ 111 (241)
.+.+++.+...++.+|||+|||+|..+ ..++. . +..+++++|+|+.+++
T Consensus 112 v~~~l~~~~~~~~~~vLDlG~GsG~~~-------------~~la~----~--------------~~~~v~~vDis~~al~ 160 (284)
T 1nv8_A 112 VELALELIRKYGIKTVADIGTGSGAIG-------------VSVAK----F--------------SDAIVFATDVSSKAVE 160 (284)
T ss_dssp HHHHHHHHHHHTCCEEEEESCTTSHHH-------------HHHHH----H--------------SSCEEEEEESCHHHHH
T ss_pred HHHHHHHhcccCCCEEEEEeCchhHHH-------------HHHHH----C--------------CCCEEEEEECCHHHHH
Confidence 344444443345679999999999988 44433 1 2568999999999999
Q ss_pred HHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCce---eEEeeeehhh---------
Q psy1420 112 FLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSY---SAYTIAFGIR--------- 179 (241)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~---D~V~~~~~l~--------- 179 (241)
.+++++. ..++. .+++++++|+... .+ ++| |+|+++--..
T Consensus 161 ~A~~n~~-------------------------~~~l~-~~v~~~~~D~~~~-~~-~~f~~~D~IvsnPPyi~~~~~l~~~ 212 (284)
T 1nv8_A 161 IARKNAE-------------------------RHGVS-DRFFVRKGEFLEP-FK-EKFASIEMILSNPPYVKSSAHLPKD 212 (284)
T ss_dssp HHHHHHH-------------------------HTTCT-TSEEEEESSTTGG-GG-GGTTTCCEEEECCCCBCGGGSCTTS
T ss_pred HHHHHHH-------------------------HcCCC-CceEEEECcchhh-cc-cccCCCCEEEEcCCCCCcccccChh
Confidence 9999988 55554 4689999998873 22 478 9999861110
Q ss_pred --cc--------ccHHHHHHHHH-HhccCCcEEEEEecCH---HHHHHHHHHC
Q psy1420 180 --NV--------TRIDKALSEAY-RVLKPGGRFLCLEFSH---EEFKSMIESA 218 (241)
Q Consensus 180 --~~--------~~~~~~l~~~~-~~LkpgG~l~i~~~~~---~~~~~~l~~~ 218 (241)
+- .+...+++++. +.|+|||++++ +... +++.+++++.
T Consensus 213 v~~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~-e~~~~q~~~v~~~~~~~ 264 (284)
T 1nv8_A 213 VLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLM-EIGEDQVEELKKIVSDT 264 (284)
T ss_dssp CCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEE-ECCTTCHHHHTTTSTTC
T ss_pred hccCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEE-EECchHHHHHHHHHHhC
Confidence 11 12237899999 99999999987 4443 5566666654
No 206
>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32
Probab=99.10 E-value=4.7e-10 Score=92.10 Aligned_cols=120 Identities=13% Similarity=0.166 Sum_probs=85.3
Q ss_pred CCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhc
Q psy1420 40 GPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEE 119 (241)
Q Consensus 40 ~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~ 119 (241)
...++.+|||+|||+|..+ ..+.. .....++++|+++.+++.+++++.
T Consensus 48 ~~~~~~~vlD~gcG~G~~~-------------~~l~~------------------~~~~~v~~vD~~~~~~~~a~~~~~- 95 (200)
T 1ne2_A 48 GNIGGRSVIDAGTGNGILA-------------CGSYL------------------LGAESVTAFDIDPDAIETAKRNCG- 95 (200)
T ss_dssp TSSBTSEEEEETCTTCHHH-------------HHHHH------------------TTBSEEEEEESCHHHHHHHHHHCT-
T ss_pred CCCCCCEEEEEeCCccHHH-------------HHHHH------------------cCCCEEEEEECCHHHHHHHHHhcC-
Confidence 4457789999999999988 43333 113469999999999999987753
Q ss_pred CCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhcccc--HHHHHHHHHHhccC
Q psy1420 120 LPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTR--IDKALSEAYRVLKP 197 (241)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~--~~~~l~~~~~~Lkp 197 (241)
+++++++|+..++ ++||+|+++..+++..+ ...+++++.+.+
T Consensus 96 -------------------------------~~~~~~~d~~~~~---~~~D~v~~~~p~~~~~~~~~~~~l~~~~~~~-- 139 (200)
T 1ne2_A 96 -------------------------------GVNFMVADVSEIS---GKYDTWIMNPPFGSVVKHSDRAFIDKAFETS-- 139 (200)
T ss_dssp -------------------------------TSEEEECCGGGCC---CCEEEEEECCCC-------CHHHHHHHHHHE--
T ss_pred -------------------------------CCEEEECcHHHCC---CCeeEEEECCCchhccCchhHHHHHHHHHhc--
Confidence 4788999988864 68999999988877654 357889999988
Q ss_pred CcEEEEEecC-HHHHHHHHHHCCCceEEEEEe
Q psy1420 198 GGRFLCLEFS-HEEFKSMIESAGFQYVTYENL 228 (241)
Q Consensus 198 gG~l~i~~~~-~~~~~~~l~~~Gf~~~~~~~~ 228 (241)
|+.+++.... ...+.+.++.+| .+..+...
T Consensus 140 g~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~ 170 (200)
T 1ne2_A 140 MWIYSIGNAKARDFLRREFSARG-DVFREEKV 170 (200)
T ss_dssp EEEEEEEEGGGHHHHHHHHHHHE-EEEEEEEE
T ss_pred CcEEEEEcCchHHHHHHHHHHCC-CEEEEEEE
Confidence 5544443332 267788888998 66555443
No 207
>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*
Probab=99.10 E-value=1.9e-10 Score=101.45 Aligned_cols=75 Identities=7% Similarity=-0.029 Sum_probs=56.4
Q ss_pred CeeE-EecccCCCCCCCCceeEEeeeehhhc-----------cccHHHHHHHHHHhccCCcEEEEEecCH---HHHHHHH
Q psy1420 151 RLRF-LEANAEELPIESDSYSAYTIAFGIRN-----------VTRIDKALSEAYRVLKPGGRFLCLEFSH---EEFKSMI 215 (241)
Q Consensus 151 ~~~~-~~~d~~~~~~~~~~~D~V~~~~~l~~-----------~~~~~~~l~~~~~~LkpgG~l~i~~~~~---~~~~~~l 215 (241)
++++ +++|+.+++.+ ++||+|+++...+. ......+++++.++|||||+|++..+.. +++.+.+
T Consensus 106 ~v~~~i~gD~~~~~~~-~~fD~Vvsn~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~~~~~~~l~~~l 184 (290)
T 2xyq_A 106 DADSTLIGDCATVHTA-NKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHSWNADLYKLM 184 (290)
T ss_dssp SSSEEEESCGGGCCCS-SCEEEEEECCCCCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSSCCHHHHHHH
T ss_pred CCEEEEECccccCCcc-CcccEEEEcCCccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEeccCCHHHHHHHH
Confidence 3677 89999887654 68999998643211 1123589999999999999999976544 7888899
Q ss_pred HHCCCceEEEE
Q psy1420 216 ESAGFQYVTYE 226 (241)
Q Consensus 216 ~~~Gf~~~~~~ 226 (241)
++.||..++..
T Consensus 185 ~~~GF~~v~~~ 195 (290)
T 2xyq_A 185 GHFSWWTAFVT 195 (290)
T ss_dssp TTEEEEEEEEE
T ss_pred HHcCCcEEEEE
Confidence 99999766654
No 208
>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}
Probab=99.10 E-value=2.4e-10 Score=96.73 Aligned_cols=109 Identities=9% Similarity=0.055 Sum_probs=80.9
Q ss_pred cCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHh
Q psy1420 39 LGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAE 118 (241)
Q Consensus 39 l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~ 118 (241)
+...++.+|||+|||+|..+ ..++..++ ...+++++|+++.+++.+++++.
T Consensus 56 ~~~~~~~~VLdiG~G~G~~~-------------~~la~~~~----------------~~~~v~~vD~~~~~~~~a~~~~~ 106 (239)
T 2hnk_A 56 TKISGAKRIIEIGTFTGYSS-------------LCFASALP----------------EDGKILCCDVSEEWTNVARKYWK 106 (239)
T ss_dssp HHHHTCSEEEEECCTTCHHH-------------HHHHHHSC----------------TTCEEEEEESCHHHHHHHHHHHH
T ss_pred HHhhCcCEEEEEeCCCCHHH-------------HHHHHhCC----------------CCCEEEEEECCHHHHHHHHHHHH
Confidence 33456779999999999988 44433100 24689999999999999999887
Q ss_pred cCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCC-C--------------CCC--CceeEEeeeehhhcc
Q psy1420 119 ELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL-P--------------IES--DSYSAYTIAFGIRNV 181 (241)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~--------------~~~--~~~D~V~~~~~l~~~ 181 (241)
+.++. .++++..+|+... + ++. ++||+|++... .
T Consensus 107 -------------------------~~g~~-~~v~~~~~d~~~~~~~~~~~~~~~~~~~~f~~~~~~fD~I~~~~~---~ 157 (239)
T 2hnk_A 107 -------------------------ENGLE-NKIFLKLGSALETLQVLIDSKSAPSWASDFAFGPSSIDLFFLDAD---K 157 (239)
T ss_dssp -------------------------HTTCG-GGEEEEESCHHHHHHHHHHCSSCCGGGTTTCCSTTCEEEEEECSC---G
T ss_pred -------------------------HcCCC-CCEEEEECCHHHHHHHHHhhcccccccccccCCCCCcCEEEEeCC---H
Confidence 44443 3578888886542 2 112 68999998754 3
Q ss_pred ccHHHHHHHHHHhccCCcEEEEEe
Q psy1420 182 TRIDKALSEAYRVLKPGGRFLCLE 205 (241)
Q Consensus 182 ~~~~~~l~~~~~~LkpgG~l~i~~ 205 (241)
.+....++.+.++|+|||++++.+
T Consensus 158 ~~~~~~l~~~~~~L~pgG~lv~~~ 181 (239)
T 2hnk_A 158 ENYPNYYPLILKLLKPGGLLIADN 181 (239)
T ss_dssp GGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred HHHHHHHHHHHHHcCCCeEEEEEc
Confidence 456688999999999999999865
No 209
>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}
Probab=99.09 E-value=2.5e-10 Score=93.43 Aligned_cols=117 Identities=11% Similarity=0.124 Sum_probs=78.4
Q ss_pred CCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhccc-CCCceeecCChHhHHHHHHHHhc
Q psy1420 41 PTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESI-RQFPNQIDIPNPRLRFLEANAEE 119 (241)
Q Consensus 41 ~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~D~s~~~~~~~~~~~~~ 119 (241)
.+++.+|||+|||+|.++ ..++. ... . ..+++++|+++.. .
T Consensus 20 ~~~~~~vLDlGcG~G~~~-------------~~l~~----~~~------------~~~~~v~gvD~s~~~--------~- 61 (201)
T 2plw_A 20 LKKNKIILDIGCYPGSWC-------------QVILE----RTK------------NYKNKIIGIDKKIMD--------P- 61 (201)
T ss_dssp CCTTEEEEEESCTTCHHH-------------HHHHH----HTT------------TSCEEEEEEESSCCC--------C-
T ss_pred CCCCCEEEEeCCCCCHHH-------------HHHHH----HcC------------CCCceEEEEeCCccC--------C-
Confidence 367789999999999988 43333 100 1 3579999998831 0
Q ss_pred CCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCC-------------------------CCCCceeEEee
Q psy1420 120 LPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELP-------------------------IESDSYSAYTI 174 (241)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-------------------------~~~~~~D~V~~ 174 (241)
. ++++++++|+...+ ++..+||+|++
T Consensus 62 ---------------------------~--~~v~~~~~d~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~fD~v~~ 112 (201)
T 2plw_A 62 ---------------------------I--PNVYFIQGEIGKDNMNNIKNINYIDNMNNNSVDYKLKEILQDKKIDIILS 112 (201)
T ss_dssp ---------------------------C--TTCEEEECCTTTTSSCCC-----------CHHHHHHHHHHTTCCEEEEEE
T ss_pred ---------------------------C--CCceEEEccccchhhhhhccccccccccchhhHHHHHhhcCCCcccEEEe
Confidence 0 24566677766654 34568999999
Q ss_pred eehhhcc----ccH-------HHHHHHHHHhccCCcEEEEEecCH---HHHHHHHHHCCCceEEE
Q psy1420 175 AFGIRNV----TRI-------DKALSEAYRVLKPGGRFLCLEFSH---EEFKSMIESAGFQYVTY 225 (241)
Q Consensus 175 ~~~l~~~----~~~-------~~~l~~~~~~LkpgG~l~i~~~~~---~~~~~~l~~~Gf~~~~~ 225 (241)
...+++. .+. ..+++++.++|||||.+++..+.. .++...++. .|..+..
T Consensus 113 ~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~l~~~l~~-~f~~v~~ 176 (201)
T 2plw_A 113 DAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMYLGSQTNNLKTYLKG-MFQLVHT 176 (201)
T ss_dssp CCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECSTTHHHHHHHHHT-TEEEEEE
T ss_pred CCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEeCCCCHHHHHHHHHH-HHheEEE
Confidence 8766542 222 247899999999999999876654 455555554 4655444
No 210
>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17
Probab=99.09 E-value=6e-10 Score=97.18 Aligned_cols=131 Identities=11% Similarity=0.150 Sum_probs=91.2
Q ss_pred CCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCC
Q psy1420 43 HDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPI 122 (241)
Q Consensus 43 ~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~ 122 (241)
.+.+|||+|||+|..+ ..++. . ....+++++|+++.+++.+++++..+
T Consensus 75 ~~~~VLdiG~G~G~~~-------------~~l~~--------~---------~~~~~v~~vEid~~~v~~ar~~~~~~-- 122 (275)
T 1iy9_A 75 NPEHVLVVGGGDGGVI-------------REILK--------H---------PSVKKATLVDIDGKVIEYSKKFLPSI-- 122 (275)
T ss_dssp SCCEEEEESCTTCHHH-------------HHHTT--------C---------TTCSEEEEEESCHHHHHHHHHHCHHH--
T ss_pred CCCEEEEECCchHHHH-------------HHHHh--------C---------CCCceEEEEECCHHHHHHHHHHhHhh--
Confidence 4569999999999988 44433 1 02468999999999999999876410
Q ss_pred ccccccccceecceeeeeeccccCCCCCCeeEEecccCC-CCCCCCceeEEeeeehhhcccc----HHHHHHHHHHhccC
Q psy1420 123 ESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEE-LPIESDSYSAYTIAFGIRNVTR----IDKALSEAYRVLKP 197 (241)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~D~V~~~~~l~~~~~----~~~~l~~~~~~Lkp 197 (241)
..++..++++++.+|+.. ++...++||+|++.......+. ...+++.+.++|+|
T Consensus 123 ---------------------~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii~d~~~~~~~~~~l~~~~~~~~~~~~L~p 181 (275)
T 1iy9_A 123 ---------------------AGKLDDPRVDVQVDDGFMHIAKSENQYDVIMVDSTEPVGPAVNLFTKGFYAGIAKALKE 181 (275)
T ss_dssp ---------------------HTTTTSTTEEEEESCSHHHHHTCCSCEEEEEESCSSCCSCCCCCSTTHHHHHHHHHEEE
T ss_pred ---------------------ccccCCCceEEEECcHHHHHhhCCCCeeEEEECCCCCCCcchhhhHHHHHHHHHHhcCC
Confidence 012223579999999765 3333578999998644322111 26899999999999
Q ss_pred CcEEEEEecCH-------HHHHHHHHHCCCceEEEEE
Q psy1420 198 GGRFLCLEFSH-------EEFKSMIESAGFQYVTYEN 227 (241)
Q Consensus 198 gG~l~i~~~~~-------~~~~~~l~~~Gf~~~~~~~ 227 (241)
||++++...+. ..+.+.+++. |..+....
T Consensus 182 gG~lv~~~~~~~~~~~~~~~~~~~l~~~-F~~v~~~~ 217 (275)
T 1iy9_A 182 DGIFVAQTDNPWFTPELITNVQRDVKEI-FPITKLYT 217 (275)
T ss_dssp EEEEEEECCCTTTCHHHHHHHHHHHHTT-CSEEEEEE
T ss_pred CcEEEEEcCCccccHHHHHHHHHHHHHh-CCCeEEEE
Confidence 99999875332 4555666666 77666554
No 211
>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*
Probab=99.09 E-value=8.2e-11 Score=100.96 Aligned_cols=106 Identities=12% Similarity=0.052 Sum_probs=81.2
Q ss_pred CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCC
Q psy1420 42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP 121 (241)
Q Consensus 42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~ 121 (241)
.++.+|||+|||+|..+ ..++. .+. ...+++++|+++.+++.+++++.
T Consensus 78 ~~~~~VLeiG~G~G~~~-------------~~la~----~~~------------~~~~v~~iD~s~~~~~~a~~~~~--- 125 (247)
T 1sui_A 78 INAKNTMEIGVYTGYSL-------------LATAL----AIP------------EDGKILAMDINKENYELGLPVIK--- 125 (247)
T ss_dssp TTCCEEEEECCGGGHHH-------------HHHHH----HSC------------TTCEEEEEESCCHHHHHHHHHHH---
T ss_pred hCcCEEEEeCCCcCHHH-------------HHHHH----hCC------------CCCEEEEEECCHHHHHHHHHHHH---
Confidence 45669999999999988 43333 110 25689999999999999999987
Q ss_pred CccccccccceecceeeeeeccccCCCCCCeeEEecccCCC-C-C-----CCCceeEEeeeehhhccccHHHHHHHHHHh
Q psy1420 122 IESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL-P-I-----ESDSYSAYTIAFGIRNVTRIDKALSEAYRV 194 (241)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~-~-----~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~ 194 (241)
+.++. ++++++.+|+.+. + . +.++||+|++... ..+....++.+.++
T Consensus 126 ----------------------~~g~~-~~i~~~~gda~~~l~~l~~~~~~~~~fD~V~~d~~---~~~~~~~l~~~~~~ 179 (247)
T 1sui_A 126 ----------------------KAGVD-HKIDFREGPALPVLDEMIKDEKNHGSYDFIFVDAD---KDNYLNYHKRLIDL 179 (247)
T ss_dssp ----------------------HTTCG-GGEEEEESCHHHHHHHHHHSGGGTTCBSEEEECSC---STTHHHHHHHHHHH
T ss_pred ----------------------HcCCC-CCeEEEECCHHHHHHHHHhccCCCCCEEEEEEcCc---hHHHHHHHHHHHHh
Confidence 55553 4789999997653 2 1 1468999998643 34678899999999
Q ss_pred ccCCcEEEEEe
Q psy1420 195 LKPGGRFLCLE 205 (241)
Q Consensus 195 LkpgG~l~i~~ 205 (241)
|||||++++.+
T Consensus 180 LkpGG~lv~d~ 190 (247)
T 1sui_A 180 VKVGGVIGYDN 190 (247)
T ss_dssp BCTTCCEEEEC
T ss_pred CCCCeEEEEec
Confidence 99999998754
No 212
>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*
Probab=99.08 E-value=5.9e-10 Score=99.43 Aligned_cols=131 Identities=14% Similarity=0.199 Sum_probs=88.7
Q ss_pred CCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCC
Q psy1420 43 HDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPI 122 (241)
Q Consensus 43 ~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~ 122 (241)
++.+|||+|||+|..+ ..++. . ....+++++|+++.+++.+++++..+
T Consensus 116 ~~~~VLdiG~G~G~~~-------------~~l~~--------~---------~~~~~v~~vDis~~~l~~ar~~~~~~-- 163 (321)
T 2pt6_A 116 EPKNVLVVGGGDGGII-------------RELCK--------Y---------KSVENIDICEIDETVIEVSKIYFKNI-- 163 (321)
T ss_dssp SCCEEEEEECTTCHHH-------------HHHTT--------C---------TTCCEEEEEESCHHHHHHHHHHCTTT--
T ss_pred CCCEEEEEcCCccHHH-------------HHHHH--------c---------CCCCEEEEEECCHHHHHHHHHHHHhh--
Confidence 4569999999999988 44433 1 02568999999999999999887610
Q ss_pred ccccccccceecceeeeeeccccCCCCCCeeEEecccCCC-CCCCCceeEEeeeehhhc--cccH--HHHHHHHHHhccC
Q psy1420 123 ESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL-PIESDSYSAYTIAFGIRN--VTRI--DKALSEAYRVLKP 197 (241)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~D~V~~~~~l~~--~~~~--~~~l~~~~~~Lkp 197 (241)
..++..++++++.+|+... +...++||+|++...-.. .... ..+++.+.++|+|
T Consensus 164 ---------------------~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi~d~~~p~~~~~~l~~~~~l~~~~~~Lkp 222 (321)
T 2pt6_A 164 ---------------------SCGYEDKRVNVFIEDASKFLENVTNTYDVIIVDSSDPIGPAETLFNQNFYEKIYNALKP 222 (321)
T ss_dssp ---------------------SGGGGSTTEEEEESCHHHHHHHCCSCEEEEEEECCCSSSGGGGGSSHHHHHHHHHHEEE
T ss_pred ---------------------ccccCCCcEEEEEccHHHHHhhcCCCceEEEECCcCCCCcchhhhHHHHHHHHHHhcCC
Confidence 0122124789999997653 223568999998653211 1111 6899999999999
Q ss_pred CcEEEEEecCH-------HHHHHHHHHCCCceEEEEE
Q psy1420 198 GGRFLCLEFSH-------EEFKSMIESAGFQYVTYEN 227 (241)
Q Consensus 198 gG~l~i~~~~~-------~~~~~~l~~~Gf~~~~~~~ 227 (241)
||++++...+. ..+.+.+++. |..++...
T Consensus 223 gG~lv~~~~~~~~~~~~~~~~~~~l~~~-F~~v~~~~ 258 (321)
T 2pt6_A 223 NGYCVAQCESLWIHVGTIKNMIGYAKKL-FKKVEYAN 258 (321)
T ss_dssp EEEEEEEECCTTTCHHHHHHHHHHHHTT-CSEEEEEE
T ss_pred CcEEEEEcCCcccCHHHHHHHHHHHHHH-CCCeEEEE
Confidence 99999865332 3444455555 66665554
No 213
>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}
Probab=99.07 E-value=2e-10 Score=107.20 Aligned_cols=136 Identities=16% Similarity=0.141 Sum_probs=100.2
Q ss_pred HHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHH
Q psy1420 35 FIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLE 114 (241)
Q Consensus 35 ~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~ 114 (241)
+...+.+.++.+|||+|||+|..+ ..++..++ ....++++|+++.+++.++
T Consensus 97 ~~~~L~~~~g~~VLDlcaGpGgkt-------------~~lA~~~~----------------~~g~V~AvDis~~rl~~~~ 147 (456)
T 3m4x_A 97 VGTAAAAKPGEKVLDLCAAPGGKS-------------TQLAAQMK----------------GKGLLVTNEIFPKRAKILS 147 (456)
T ss_dssp HHHHHCCCTTCEEEESSCTTCHHH-------------HHHHHHHT----------------TCSEEEEECSSHHHHHHHH
T ss_pred HHHHcCCCCCCEEEEECCCcCHHH-------------HHHHHHcC----------------CCCEEEEEeCCHHHHHHHH
Confidence 344556788999999999999988 44444111 2468999999999999999
Q ss_pred HHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCC-CCCCceeEEeeee------hhhcccc----
Q psy1420 115 ANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELP-IESDSYSAYTIAF------GIRNVTR---- 183 (241)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~D~V~~~~------~l~~~~~---- 183 (241)
+++. +.++. ++.+.+.|+..++ ...++||+|++.- .++.-++
T Consensus 148 ~n~~-------------------------r~g~~--nv~v~~~Da~~l~~~~~~~FD~Il~DaPCSg~G~~rr~p~~~~~ 200 (456)
T 3m4x_A 148 ENIE-------------------------RWGVS--NAIVTNHAPAELVPHFSGFFDRIVVDAPCSGEGMFRKDPNAIKE 200 (456)
T ss_dssp HHHH-------------------------HHTCS--SEEEECCCHHHHHHHHTTCEEEEEEECCCCCGGGTTTCHHHHHH
T ss_pred HHHH-------------------------HcCCC--ceEEEeCCHHHhhhhccccCCEEEECCCCCCccccccCHHHhhh
Confidence 9998 66665 5888888887764 2357899999732 1211111
Q ss_pred ------------HHHHHHHHHHhccCCcEEEEEecCH------HHHHHHHHHCCCceEEEE
Q psy1420 184 ------------IDKALSEAYRVLKPGGRFLCLEFSH------EEFKSMIESAGFQYVTYE 226 (241)
Q Consensus 184 ------------~~~~l~~~~~~LkpgG~l~i~~~~~------~~~~~~l~~~Gf~~~~~~ 226 (241)
..++|+.+.++|||||+|+.++.+. +.+..++++.+|+++.+.
T Consensus 201 ~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~eEne~vv~~~l~~~~~~l~~~~ 261 (456)
T 3m4x_A 201 WTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCTFAPEENEEIISWLVENYPVTIEEIP 261 (456)
T ss_dssp CCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCCCGGGTHHHHHHHHHHSSEEEECCC
T ss_pred cCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEeecccccCHHHHHHHHHhCCCEEEecc
Confidence 1278999999999999999876543 667888889888776654
No 214
>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}
Probab=99.06 E-value=1.6e-10 Score=97.86 Aligned_cols=107 Identities=9% Similarity=0.016 Sum_probs=80.3
Q ss_pred CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCC
Q psy1420 42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP 121 (241)
Q Consensus 42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~ 121 (241)
.++.+|||+|||+|..+ ..++..++ ...+++++|+++.+++.+++++.
T Consensus 71 ~~~~~vLdiG~G~G~~~-------------~~la~~~~----------------~~~~v~~iD~~~~~~~~a~~~~~--- 118 (232)
T 3cbg_A 71 TGAKQVLEIGVFRGYSA-------------LAMALQLP----------------PDGQIIACDQDPNATAIAKKYWQ--- 118 (232)
T ss_dssp HTCCEEEEECCTTSHHH-------------HHHHTTSC----------------TTCEEEEEESCHHHHHHHHHHHH---
T ss_pred cCCCEEEEecCCCCHHH-------------HHHHHhCC----------------CCCEEEEEECCHHHHHHHHHHHH---
Confidence 45669999999999988 44433100 24689999999999999998887
Q ss_pred CccccccccceecceeeeeeccccCCCCCCeeEEecccCCC----CCCC--CceeEEeeeehhhccccHHHHHHHHHHhc
Q psy1420 122 IESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL----PIES--DSYSAYTIAFGIRNVTRIDKALSEAYRVL 195 (241)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~----~~~~--~~~D~V~~~~~l~~~~~~~~~l~~~~~~L 195 (241)
+.++. .+++++.+|+.+. +.+. ++||+|++... ..+....++++.++|
T Consensus 119 ----------------------~~g~~-~~i~~~~~d~~~~l~~l~~~~~~~~fD~V~~d~~---~~~~~~~l~~~~~~L 172 (232)
T 3cbg_A 119 ----------------------KAGVA-EKISLRLGPALATLEQLTQGKPLPEFDLIFIDAD---KRNYPRYYEIGLNLL 172 (232)
T ss_dssp ----------------------HHTCG-GGEEEEESCHHHHHHHHHTSSSCCCEEEEEECSC---GGGHHHHHHHHHHTE
T ss_pred ----------------------HcCCC-CcEEEEEcCHHHHHHHHHhcCCCCCcCEEEECCC---HHHHHHHHHHHHHHc
Confidence 55554 4688888886542 2222 68999997643 356778999999999
Q ss_pred cCCcEEEEEec
Q psy1420 196 KPGGRFLCLEF 206 (241)
Q Consensus 196 kpgG~l~i~~~ 206 (241)
+|||++++.+.
T Consensus 173 kpgG~lv~~~~ 183 (232)
T 3cbg_A 173 RRGGLMVIDNV 183 (232)
T ss_dssp EEEEEEEEECT
T ss_pred CCCeEEEEeCC
Confidence 99999998643
No 215
>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24
Probab=99.06 E-value=5.9e-10 Score=97.65 Aligned_cols=113 Identities=15% Similarity=0.203 Sum_probs=82.2
Q ss_pred HHHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHh
Q psy1420 30 LWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPR 109 (241)
Q Consensus 30 ~~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~ 109 (241)
.+.+.+.+.+...++.+|||+|||+|..+ ..++. ...+++++|+++.+
T Consensus 15 ~i~~~i~~~~~~~~~~~VLDiG~G~G~lt-------------~~L~~-------------------~~~~v~~vD~~~~~ 62 (285)
T 1zq9_A 15 LIINSIIDKAALRPTDVVLEVGPGTGNMT-------------VKLLE-------------------KAKKVVACELDPRL 62 (285)
T ss_dssp HHHHHHHHHTCCCTTCEEEEECCTTSTTH-------------HHHHH-------------------HSSEEEEEESCHHH
T ss_pred HHHHHHHHhcCCCCCCEEEEEcCcccHHH-------------HHHHh-------------------hCCEEEEEECCHHH
Confidence 34566777777788889999999999999 55544 34589999999999
Q ss_pred HHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHH-HHH
Q psy1420 110 LRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRID-KAL 188 (241)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~-~~l 188 (241)
++.++++.. ..+.. ++++++++|+...+.+ +||+|+++...+...+.. ..+
T Consensus 63 ~~~a~~~~~-------------------------~~~~~-~~v~~~~~D~~~~~~~--~fD~vv~nlpy~~~~~~~~~~l 114 (285)
T 1zq9_A 63 VAELHKRVQ-------------------------GTPVA-SKLQVLVGDVLKTDLP--FFDTCVANLPYQISSPFVFKLL 114 (285)
T ss_dssp HHHHHHHHT-------------------------TSTTG-GGEEEEESCTTTSCCC--CCSEEEEECCGGGHHHHHHHHH
T ss_pred HHHHHHHHH-------------------------hcCCC-CceEEEEcceecccch--hhcEEEEecCcccchHHHHHHH
Confidence 999998876 33332 3689999999887654 699999976554332221 222
Q ss_pred --------------HHH--HHhccCCcEEE
Q psy1420 189 --------------SEA--YRVLKPGGRFL 202 (241)
Q Consensus 189 --------------~~~--~~~LkpgG~l~ 202 (241)
.++ +++++|||.++
T Consensus 115 ~~~~~~~~~~~m~qkEva~r~vlkPGg~~y 144 (285)
T 1zq9_A 115 LHRPFFRCAILMFQREFALRLVAKPGDKLY 144 (285)
T ss_dssp HCSSCCSEEEEEEEHHHHHHHHCCTTCTTC
T ss_pred hcCcchhhhhhhhhHHHHHHHhcCCCCccc
Confidence 222 36899999874
No 216
>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*
Probab=99.06 E-value=3.9e-10 Score=102.95 Aligned_cols=126 Identities=9% Similarity=0.087 Sum_probs=90.2
Q ss_pred CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCC
Q psy1420 42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP 121 (241)
Q Consensus 42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~ 121 (241)
.++.+|||+|||+|..+ ..++. ....+++++|+++.+++.+++++.
T Consensus 211 ~~~~~VLDl~cGtG~~s-------------l~la~------------------~ga~~V~~vD~s~~al~~A~~N~~--- 256 (385)
T 2b78_A 211 AAGKTVLNLFSYTAAFS-------------VAAAM------------------GGAMATTSVDLAKRSRALSLAHFE--- 256 (385)
T ss_dssp TBTCEEEEETCTTTHHH-------------HHHHH------------------TTBSEEEEEESCTTHHHHHHHHHH---
T ss_pred cCCCeEEEEeeccCHHH-------------HHHHH------------------CCCCEEEEEECCHHHHHHHHHHHH---
Confidence 46779999999999988 43333 023479999999999999999988
Q ss_pred CccccccccceecceeeeeeccccCCCCCCeeEEecccCCC-CC---CCCceeEEeeeehh---------hccccHHHHH
Q psy1420 122 IESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL-PI---ESDSYSAYTIAFGI---------RNVTRIDKAL 188 (241)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~---~~~~~D~V~~~~~l---------~~~~~~~~~l 188 (241)
..++...+++++++|+.+. +. ...+||+|++.-.. ....+..+++
T Consensus 257 ----------------------~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~Ii~DPP~~~~~~~~~~~~~~~~~~ll 314 (385)
T 2b78_A 257 ----------------------ANHLDMANHQLVVMDVFDYFKYARRHHLTYDIIIIDPPSFARNKKEVFSVSKDYHKLI 314 (385)
T ss_dssp ----------------------HTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEEECCCCC-----CCCCHHHHHHHHH
T ss_pred ----------------------HcCCCccceEEEECCHHHHHHHHHHhCCCccEEEECCCCCCCChhhHHHHHHHHHHHH
Confidence 5565422689999998763 21 23589999974211 1233456678
Q ss_pred HHHHHhccCCcEEEEEecCH--------HHHHHHHHHCCCceE
Q psy1420 189 SEAYRVLKPGGRFLCLEFSH--------EEFKSMIESAGFQYV 223 (241)
Q Consensus 189 ~~~~~~LkpgG~l~i~~~~~--------~~~~~~l~~~Gf~~~ 223 (241)
..+.++|+|||.+++...+. +.+.+.+..+|.+++
T Consensus 315 ~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~ 357 (385)
T 2b78_A 315 RQGLEILSENGLIIASTNAANMTVSQFKKQIEKGFGKQKHTYL 357 (385)
T ss_dssp HHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHTTCCCEEE
T ss_pred HHHHHhcCCCcEEEEEeCCCcCCHHHHHHHHHHHHHHcCCcEE
Confidence 88899999999999877555 334455666777643
No 217
>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1
Probab=99.06 E-value=1.2e-10 Score=97.41 Aligned_cols=107 Identities=11% Similarity=0.088 Sum_probs=80.6
Q ss_pred CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCC
Q psy1420 42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP 121 (241)
Q Consensus 42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~ 121 (241)
.++.+|||+|||+|..+ ..++. .+ + ...+++++|+++.+++.+++++.
T Consensus 68 ~~~~~vLdiG~G~G~~~-------------~~la~----~~---~---------~~~~v~~vD~~~~~~~~a~~~~~--- 115 (229)
T 2avd_A 68 IQAKKALDLGTFTGYSA-------------LALAL----AL---P---------ADGRVVTCEVDAQPPELGRPLWR--- 115 (229)
T ss_dssp TTCCEEEEECCTTSHHH-------------HHHHT----TS---C---------TTCEEEEEESCSHHHHHHHHHHH---
T ss_pred cCCCEEEEEcCCccHHH-------------HHHHH----hC---C---------CCCEEEEEECCHHHHHHHHHHHH---
Confidence 56679999999999988 43333 10 0 25689999999999999999887
Q ss_pred CccccccccceecceeeeeeccccCCCCCCeeEEecccCCC-C-CC----CCceeEEeeeehhhccccHHHHHHHHHHhc
Q psy1420 122 IESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL-P-IE----SDSYSAYTIAFGIRNVTRIDKALSEAYRVL 195 (241)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~-~~----~~~~D~V~~~~~l~~~~~~~~~l~~~~~~L 195 (241)
..++. .+++++.+|+.+. + .. .++||+|++... .......++.+.++|
T Consensus 116 ----------------------~~g~~-~~i~~~~~d~~~~~~~~~~~~~~~~~D~v~~d~~---~~~~~~~l~~~~~~L 169 (229)
T 2avd_A 116 ----------------------QAEAE-HKIDLRLKPALETLDELLAAGEAGTFDVAVVDAD---KENCSAYYERCLQLL 169 (229)
T ss_dssp ----------------------HTTCT-TTEEEEESCHHHHHHHHHHTTCTTCEEEEEECSC---STTHHHHHHHHHHHE
T ss_pred ----------------------HCCCC-CeEEEEEcCHHHHHHHHHhcCCCCCccEEEECCC---HHHHHHHHHHHHHHc
Confidence 55554 4789999987543 1 11 168999998543 345678999999999
Q ss_pred cCCcEEEEEec
Q psy1420 196 KPGGRFLCLEF 206 (241)
Q Consensus 196 kpgG~l~i~~~ 206 (241)
+|||++++.+.
T Consensus 170 ~pgG~lv~~~~ 180 (229)
T 2avd_A 170 RPGGILAVLRV 180 (229)
T ss_dssp EEEEEEEEECC
T ss_pred CCCeEEEEECC
Confidence 99999998553
No 218
>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}
Probab=99.06 E-value=5.7e-10 Score=104.81 Aligned_cols=127 Identities=15% Similarity=0.196 Sum_probs=93.7
Q ss_pred hhcCCC--CCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHH
Q psy1420 37 DRLGPT--HDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLE 114 (241)
Q Consensus 37 ~~l~~~--~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~ 114 (241)
..+.+. ++.+|||+|||+|..+ ..++..++ ....++++|+++.+++.++
T Consensus 109 ~~L~~~~~~g~~VLDl~aGpG~kt-------------~~lA~~~~----------------~~g~V~avDis~~~l~~~~ 159 (479)
T 2frx_A 109 AALFADGNAPQRVMDVAAAPGSKT-------------TQISARMN----------------NEGAILANEFSASRVKVLH 159 (479)
T ss_dssp HHHTTTTCCCSEEEESSCTTSHHH-------------HHHHHHTT----------------TCSEEEEECSSHHHHHHHH
T ss_pred HHhCcccCCCCEEEEeCCCCCHHH-------------HHHHHhCC----------------CCCEEEEEECCHHHHHHHH
Confidence 345556 8899999999999988 44444111 2468999999999999999
Q ss_pred HHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCC-CCCceeEEeee---e---hhhcccc----
Q psy1420 115 ANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPI-ESDSYSAYTIA---F---GIRNVTR---- 183 (241)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~D~V~~~---~---~l~~~~~---- 183 (241)
+++. +.++. ++.+++.|+..++. ..++||+|++. . .++..++
T Consensus 160 ~n~~-------------------------r~g~~--nv~~~~~D~~~~~~~~~~~fD~Il~D~PcSg~G~~~~~pd~~~~ 212 (479)
T 2frx_A 160 ANIS-------------------------RCGIS--NVALTHFDGRVFGAAVPEMFDAILLDAPCSGEGVVRKDPDALKN 212 (479)
T ss_dssp HHHH-------------------------HHTCC--SEEEECCCSTTHHHHSTTCEEEEEEECCCCCGGGGGTCTTSSSS
T ss_pred HHHH-------------------------HcCCC--cEEEEeCCHHHhhhhccccCCEEEECCCcCCcccccCCHHHHhh
Confidence 9988 66654 68899999887653 35689999972 1 2222121
Q ss_pred ------------HHHHHHHHHHhccCCcEEEEEecCH------HHHHHHHHHCC
Q psy1420 184 ------------IDKALSEAYRVLKPGGRFLCLEFSH------EEFKSMIESAG 219 (241)
Q Consensus 184 ------------~~~~l~~~~~~LkpgG~l~i~~~~~------~~~~~~l~~~G 219 (241)
..++|+++.++|||||+|++++.+. +.+..++++.+
T Consensus 213 ~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs~~~~Ene~vv~~~l~~~~ 266 (479)
T 2frx_A 213 WSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTLNQEENEAVCLWLKETYP 266 (479)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCSSTTTHHHHHHHHHHST
T ss_pred cCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEecccCCcccCHHHHHHHHHHCC
Confidence 2478999999999999999877544 45567777776
No 219
>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*
Probab=99.05 E-value=1.2e-10 Score=111.22 Aligned_cols=120 Identities=14% Similarity=0.157 Sum_probs=90.6
Q ss_pred CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCC
Q psy1420 42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP 121 (241)
Q Consensus 42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~ 121 (241)
.++.+|||||||+|.++ ..++. .+..|+|+|.++.+++.|+..+.
T Consensus 65 ~~~~~vLDvGCG~G~~~-------------~~la~-------------------~ga~V~giD~~~~~i~~a~~~a~--- 109 (569)
T 4azs_A 65 GRPLNVLDLGCAQGFFS-------------LSLAS-------------------KGATIVGIDFQQENINVCRALAE--- 109 (569)
T ss_dssp TSCCEEEEETCTTSHHH-------------HHHHH-------------------TTCEEEEEESCHHHHHHHHHHHH---
T ss_pred CCCCeEEEECCCCcHHH-------------HHHHh-------------------CCCEEEEECCCHHHHHHHHHHHH---
Confidence 35679999999999988 44444 46789999999999999998887
Q ss_pred CccccccccceecceeeeeeccccCCCCCCeeEEecccCCC--CCCCCceeEEeeeehhhccccHH--HHHHHHHHhccC
Q psy1420 122 IESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL--PIESDSYSAYTIAFGIRNVTRID--KALSEAYRVLKP 197 (241)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~D~V~~~~~l~~~~~~~--~~l~~~~~~Lkp 197 (241)
..+.. ++++.+++++++ +.++++||+|+|..+++|++++. ..+..+.+.+++
T Consensus 110 ----------------------~~~~~--~~~~~~~~~~~~~~~~~~~~fD~v~~~e~~ehv~~~~~~~~~~~~~~tl~~ 165 (569)
T 4azs_A 110 ----------------------ENPDF--AAEFRVGRIEEVIAALEEGEFDLAIGLSVFHHIVHLHGIDEVKRLLSRLAD 165 (569)
T ss_dssp ----------------------TSTTS--EEEEEECCHHHHHHHCCTTSCSEEEEESCHHHHHHHHCHHHHHHHHHHHHH
T ss_pred ----------------------hcCCC--ceEEEECCHHHHhhhccCCCccEEEECcchhcCCCHHHHHHHHHHHHHhcc
Confidence 44322 589999999887 34567899999999999999875 334456677888
Q ss_pred CcEEEEEecCH------------HHHHHHHHHCCC
Q psy1420 198 GGRFLCLEFSH------------EEFKSMIESAGF 220 (241)
Q Consensus 198 gG~l~i~~~~~------------~~~~~~l~~~Gf 220 (241)
+|..++..... .+++++++...|
T Consensus 166 ~~~~~~~~~~~~e~~~~~~p~~~~~~~~~i~~~~~ 200 (569)
T 4azs_A 166 VTQAVILELAVKEEPFYWGVSQPDDPRELIEQCAF 200 (569)
T ss_dssp HSSEEEEECCCTTSSSGGGGGSCSSGGGGTTTSSE
T ss_pred ccceeeEEeccccccccccCCCCccHHHhcCHHHH
Confidence 88766654332 455666666655
No 220
>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17
Probab=99.05 E-value=7e-10 Score=98.78 Aligned_cols=130 Identities=12% Similarity=0.116 Sum_probs=86.5
Q ss_pred CCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCC
Q psy1420 43 HDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPI 122 (241)
Q Consensus 43 ~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~ 122 (241)
++.+|||+|||+|..+ ..++. . ....+++++|+++.+++.+++++.
T Consensus 108 ~~~~VLdIG~G~G~~~-------------~~l~~--------~---------~~~~~v~~vDid~~~i~~Ar~~~~---- 153 (314)
T 2b2c_A 108 DPKRVLIIGGGDGGIL-------------REVLK--------H---------ESVEKVTMCEIDEMVIDVAKKFLP---- 153 (314)
T ss_dssp SCCEEEEESCTTSHHH-------------HHHTT--------C---------TTCCEEEEECSCHHHHHHHHHHCT----
T ss_pred CCCEEEEEcCCcCHHH-------------HHHHH--------c---------CCCCEEEEEECCHHHHHHHHHHHH----
Confidence 4569999999999988 44433 0 025689999999999999998865
Q ss_pred ccccccccceecceeeeeecccc--CCCCCCeeEEecccCCC-CCCCCceeEEeeeehhhccccH----HHHHHHHHHhc
Q psy1420 123 ESDSYSAYTIAFGIRNVTRIDKI--DIPNPRLRFLEANAEEL-PIESDSYSAYTIAFGIRNVTRI----DKALSEAYRVL 195 (241)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~d~~~~-~~~~~~~D~V~~~~~l~~~~~~----~~~l~~~~~~L 195 (241)
.. ++..++++++.+|+... +...++||+|++...-+..+.. ..+++.+.++|
T Consensus 154 ---------------------~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~d~~~~~~~~~~l~t~~~l~~~~~~L 212 (314)
T 2b2c_A 154 ---------------------GMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVIITDSSDPVGPAESLFGQSYYELLRDAL 212 (314)
T ss_dssp ---------------------TTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEEECCC-------------HHHHHHHHE
T ss_pred ---------------------HhccccCCCCEEEEEChHHHHHHhcCCCceEEEEcCCCCCCcchhhhHHHHHHHHHhhc
Confidence 21 22125789999997652 3345789999986532211111 68899999999
Q ss_pred cCCcEEEEEecCH-------HHHHHHHHHCCCceEEEEEe
Q psy1420 196 KPGGRFLCLEFSH-------EEFKSMIESAGFQYVTYENL 228 (241)
Q Consensus 196 kpgG~l~i~~~~~-------~~~~~~l~~~Gf~~~~~~~~ 228 (241)
+|||++++..-+. ..+.+.+++. |..+.....
T Consensus 213 kpgG~lv~~~~~~~~~~~~~~~~~~~l~~v-F~~v~~~~~ 251 (314)
T 2b2c_A 213 KEDGILSSQGESVWLHLPLIAHLVAFNRKI-FPAVTYAQS 251 (314)
T ss_dssp EEEEEEEEECCCTTTCHHHHHHHHHHHHHH-CSEEEEEEE
T ss_pred CCCeEEEEECCCcccCHHHHHHHHHHHHHH-CCcceEEEE
Confidence 9999999864221 3444555555 776665544
No 221
>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*
Probab=99.05 E-value=2.5e-10 Score=106.86 Aligned_cols=135 Identities=19% Similarity=0.221 Sum_probs=97.5
Q ss_pred HHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHH
Q psy1420 35 FIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLE 114 (241)
Q Consensus 35 ~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~ 114 (241)
+...+...++.+|||+|||+|..+ ..++..++ ....++++|+++.+++.++
T Consensus 93 ~a~~L~~~~g~~VLDlgaGpG~kt-------------~~LA~~~~----------------~~g~V~AvDis~~~l~~a~ 143 (464)
T 3m6w_A 93 VGVLLDPKPGERVLDLAAAPGGKT-------------THLAARMG----------------GKGLLLANEVDGKRVRGLL 143 (464)
T ss_dssp HHHHHCCCTTCEEEESSCTTCHHH-------------HHHHHHTT----------------TCSEEEEECSCHHHHHHHH
T ss_pred HHHhcCcCCCCEEEEEcCCcCHHH-------------HHHHHhCC----------------CCCEEEEEECCHHHHHHHH
Confidence 444566788999999999999988 44444111 2357999999999999999
Q ss_pred HHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCC-CCCCceeEEeee------ehhhcccc----
Q psy1420 115 ANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELP-IESDSYSAYTIA------FGIRNVTR---- 183 (241)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~D~V~~~------~~l~~~~~---- 183 (241)
+++. +.++. +.+.++|+..++ ...++||+|++. ..++..++
T Consensus 144 ~n~~-------------------------r~G~~---v~~~~~Da~~l~~~~~~~FD~Il~D~PcSg~G~~rr~pd~~~~ 195 (464)
T 3m6w_A 144 ENVE-------------------------RWGAP---LAVTQAPPRALAEAFGTYFHRVLLDAPCSGEGMFRKDREAARH 195 (464)
T ss_dssp HHHH-------------------------HHCCC---CEEECSCHHHHHHHHCSCEEEEEEECCCCCGGGTTTCTTSGGG
T ss_pred HHHH-------------------------HcCCe---EEEEECCHHHhhhhccccCCEEEECCCcCCccccccChHHhhh
Confidence 9988 55554 778888887764 235789999952 12222122
Q ss_pred ------------HHHHHHHHHHhccCCcEEEEEecCH------HHHHHHHHHC-CCceEEEE
Q psy1420 184 ------------IDKALSEAYRVLKPGGRFLCLEFSH------EEFKSMIESA-GFQYVTYE 226 (241)
Q Consensus 184 ------------~~~~l~~~~~~LkpgG~l~i~~~~~------~~~~~~l~~~-Gf~~~~~~ 226 (241)
...+|+.+.++|||||+|+.++.+. +.+..++++. +|+++...
T Consensus 196 ~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs~~~eEne~vv~~~l~~~~~~~l~~~~ 257 (464)
T 3m6w_A 196 WGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCTFAPEENEGVVAHFLKAHPEFRLEDAR 257 (464)
T ss_dssp CCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCCGGGTHHHHHHHHHHCTTEEEECCC
T ss_pred cCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeccCchhcCHHHHHHHHHHCCCcEEEecc
Confidence 1678999999999999999876543 5566777776 57766543
No 222
>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}
Probab=99.05 E-value=8.8e-10 Score=100.64 Aligned_cols=129 Identities=14% Similarity=0.126 Sum_probs=94.3
Q ss_pred CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCC
Q psy1420 42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP 121 (241)
Q Consensus 42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~ 121 (241)
.++.+|||+|||+|.++ ..++. .....++++|+++.+++.+++++.
T Consensus 219 ~~~~~VLDl~cG~G~~s-------------l~la~------------------~g~~~V~~vD~s~~al~~a~~n~~--- 264 (396)
T 3c0k_A 219 VENKRVLNCFSYTGGFA-------------VSALM------------------GGCSQVVSVDTSQEALDIARQNVE--- 264 (396)
T ss_dssp CTTCEEEEESCTTCSHH-------------HHHHH------------------TTCSEEEEEESCHHHHHHHHHHHH---
T ss_pred hCCCeEEEeeccCCHHH-------------HHHHH------------------CCCCEEEEEECCHHHHHHHHHHHH---
Confidence 46779999999999998 44443 023579999999999999999988
Q ss_pred CccccccccceecceeeeeeccccCC-CCCCeeEEecccCCCCC----CCCceeEEeeeehh---------hccccHHHH
Q psy1420 122 IESDSYSAYTIAFGIRNVTRIDKIDI-PNPRLRFLEANAEELPI----ESDSYSAYTIAFGI---------RNVTRIDKA 187 (241)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~~~~~----~~~~~D~V~~~~~l---------~~~~~~~~~ 187 (241)
..++ . ++++++++|+..... ...+||+|++.-.. .........
T Consensus 265 ----------------------~ngl~~-~~v~~~~~D~~~~~~~~~~~~~~fD~Ii~dpP~~~~~~~~~~~~~~~~~~~ 321 (396)
T 3c0k_A 265 ----------------------LNKLDL-SKAEFVRDDVFKLLRTYRDRGEKFDVIVMDPPKFVENKSQLMGACRGYKDI 321 (396)
T ss_dssp ----------------------HTTCCG-GGEEEEESCHHHHHHHHHHTTCCEEEEEECCSSTTTCSSSSSCCCTHHHHH
T ss_pred ----------------------HcCCCc-cceEEEECCHHHHHHHHHhcCCCCCEEEECCCCCCCChhHHHHHHHHHHHH
Confidence 5555 3 368899999876421 14589999986321 123566789
Q ss_pred HHHHHHhccCCcEEEEEecCH--------HHHHHHHHHCCCceEEEEE
Q psy1420 188 LSEAYRVLKPGGRFLCLEFSH--------EEFKSMIESAGFQYVTYEN 227 (241)
Q Consensus 188 l~~~~~~LkpgG~l~i~~~~~--------~~~~~~l~~~Gf~~~~~~~ 227 (241)
+..+.+.|+|||++++...+. +.+.+.+.++|+....+..
T Consensus 322 l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~i~~ 369 (396)
T 3c0k_A 322 NMLAIQLLNEGGILLTFSCSGLMTSDLFQKIIADAAIDAGRDVQFIEQ 369 (396)
T ss_dssp HHHHHHTEEEEEEEEEEECCTTCCHHHHHHHHHHHHHHHTCCEEEEEE
T ss_pred HHHHHHhcCCCcEEEEEeCCCcCCHHHHHHHHHHHHHHcCCeEEEEEE
Confidence 999999999999999876554 3344566788866544443
No 223
>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*
Probab=99.04 E-value=1.7e-09 Score=94.63 Aligned_cols=133 Identities=14% Similarity=0.195 Sum_probs=90.0
Q ss_pred CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCC
Q psy1420 42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP 121 (241)
Q Consensus 42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~ 121 (241)
.++.+|||+|||+|..+ ..++. . ....+++++|+++.+++.+++.+..+
T Consensus 77 ~~~~~VLdiG~G~G~~~-------------~~l~~--------~---------~~~~~v~~vDid~~~i~~a~~~~~~~- 125 (283)
T 2i7c_A 77 KEPKNVLVVGGGDGGII-------------RELCK--------Y---------KSVENIDICEIDETVIEVSKIYFKNI- 125 (283)
T ss_dssp SSCCEEEEEECTTSHHH-------------HHHTT--------C---------TTCCEEEEEESCHHHHHHHHHHCTTT-
T ss_pred CCCCeEEEEeCCcCHHH-------------HHHHH--------c---------CCCCEEEEEECCHHHHHHHHHHhHHh-
Confidence 45579999999999988 44433 1 02468999999999999999876511
Q ss_pred CccccccccceecceeeeeeccccCCCCCCeeEEecccCCC-CCCCCceeEEeeeehhhccc--cH--HHHHHHHHHhcc
Q psy1420 122 IESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL-PIESDSYSAYTIAFGIRNVT--RI--DKALSEAYRVLK 196 (241)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~D~V~~~~~l~~~~--~~--~~~l~~~~~~Lk 196 (241)
..++..++++++.+|+... +...++||+|++.......+ .. ..+++.+.++|+
T Consensus 126 ----------------------~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~ 183 (283)
T 2i7c_A 126 ----------------------SCGYEDKRVNVFIEDASKFLENVTNTYDVIIVDSSDPIGPAETLFNQNFYEKIYNALK 183 (283)
T ss_dssp ----------------------SGGGGSTTEEEEESCHHHHHHHCCSCEEEEEEECCCTTTGGGGGSSHHHHHHHHHHEE
T ss_pred ----------------------ccccCCCcEEEEECChHHHHHhCCCCceEEEEcCCCCCCcchhhhHHHHHHHHHHhcC
Confidence 0011125789999997653 22257899999865333222 22 689999999999
Q ss_pred CCcEEEEEecCH-------HHHHHHHHHCCCceEEEEEe
Q psy1420 197 PGGRFLCLEFSH-------EEFKSMIESAGFQYVTYENL 228 (241)
Q Consensus 197 pgG~l~i~~~~~-------~~~~~~l~~~Gf~~~~~~~~ 228 (241)
|||++++...+. ..+.+.+++. |..++....
T Consensus 184 pgG~lv~~~~~~~~~~~~~~~~~~~l~~~-F~~v~~~~~ 221 (283)
T 2i7c_A 184 PNGYCVAQCESLWIHVGTIKNMIGYAKKL-FKKVEYANI 221 (283)
T ss_dssp EEEEEEEECCCTTTCHHHHHHHHHHHHTT-CSEEEEEEE
T ss_pred CCcEEEEECCCcccCHHHHHHHHHHHHHH-CCceEEEEE
Confidence 999999875332 3444455554 776655433
No 224
>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*
Probab=99.04 E-value=1.1e-09 Score=96.09 Aligned_cols=128 Identities=14% Similarity=0.192 Sum_probs=97.1
Q ss_pred HHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHH
Q psy1420 32 KDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLR 111 (241)
Q Consensus 32 ~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~ 111 (241)
+..+.+.+ ++|.+|||+|||+|.++ ..++. ....+++++|+++.+++
T Consensus 116 r~ri~~~~--~~g~~VlD~~aG~G~~~-------------i~~a~------------------~g~~~V~avD~np~a~~ 162 (278)
T 3k6r_A 116 RVRMAKVA--KPDELVVDMFAGIGHLS-------------LPIAV------------------YGKAKVIAIEKDPYTFK 162 (278)
T ss_dssp HHHHHHHC--CTTCEEEETTCTTTTTT-------------HHHHH------------------HTCCEEEEECCCHHHHH
T ss_pred HHHHHHhc--CCCCEEEEecCcCcHHH-------------HHHHH------------------hcCCeEEEEECCHHHHH
Confidence 34454443 46889999999999998 44333 12357999999999999
Q ss_pred HHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHHHH
Q psy1420 112 FLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEA 191 (241)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~~ 191 (241)
.+++++. ..++. ++++++++|+...+. .+.||.|+++.. +....++..+
T Consensus 163 ~~~~N~~-------------------------~N~v~-~~v~~~~~D~~~~~~-~~~~D~Vi~~~p----~~~~~~l~~a 211 (278)
T 3k6r_A 163 FLVENIH-------------------------LNKVE-DRMSAYNMDNRDFPG-ENIADRILMGYV----VRTHEFIPKA 211 (278)
T ss_dssp HHHHHHH-------------------------HTTCT-TTEEEECSCTTTCCC-CSCEEEEEECCC----SSGGGGHHHH
T ss_pred HHHHHHH-------------------------HcCCC-CcEEEEeCcHHHhcc-ccCCCEEEECCC----CcHHHHHHHH
Confidence 9999998 66776 679999999988753 568999987533 2334677788
Q ss_pred HHhccCCcEEEEEecCH---------HHHHHHHHHCCCceE
Q psy1420 192 YRVLKPGGRFLCLEFSH---------EEFKSMIESAGFQYV 223 (241)
Q Consensus 192 ~~~LkpgG~l~i~~~~~---------~~~~~~l~~~Gf~~~ 223 (241)
.++|||||.+.+.++.+ +.++++.++.|+.+.
T Consensus 212 ~~~lk~gG~ih~~~~~~e~~~~~~~~e~i~~~~~~~g~~v~ 252 (278)
T 3k6r_A 212 LSIAKDGAIIHYHNTVPEKLMPREPFETFKRITKEYGYDVE 252 (278)
T ss_dssp HHHEEEEEEEEEEEEEEGGGTTTTTHHHHHHHHHHTTCEEE
T ss_pred HHHcCCCCEEEEEeeecccccchhHHHHHHHHHHHcCCcEE
Confidence 89999999987654432 677888999999764
No 225
>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A
Probab=99.04 E-value=8.9e-10 Score=101.73 Aligned_cols=133 Identities=15% Similarity=0.224 Sum_probs=96.7
Q ss_pred HHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHH
Q psy1420 34 IFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFL 113 (241)
Q Consensus 34 ~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~ 113 (241)
.+...+++.++.+|||+|||+|..+ ..++..+ ....++++|+++.+++.+
T Consensus 237 ~~~~~l~~~~g~~VLDlgaG~G~~t-------------~~la~~~-----------------~~~~v~a~D~~~~~l~~~ 286 (429)
T 1sqg_A 237 GCMTWLAPQNGEHILDLCAAPGGKT-------------THILEVA-----------------PEAQVVAVDIDEQRLSRV 286 (429)
T ss_dssp THHHHHCCCTTCEEEEESCTTCHHH-------------HHHHHHC-----------------TTCEEEEEESSTTTHHHH
T ss_pred HHHHHcCCCCcCeEEEECCCchHHH-------------HHHHHHc-----------------CCCEEEEECCCHHHHHHH
Confidence 3445567788999999999999988 4444411 136899999999999999
Q ss_pred HHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCC--CCCCceeEEeee------ehhhccccH-
Q psy1420 114 EANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELP--IESDSYSAYTIA------FGIRNVTRI- 184 (241)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~D~V~~~------~~l~~~~~~- 184 (241)
++++. ..++. +.+.+.|+...+ ++.++||+|++. ..++..++.
T Consensus 287 ~~~~~-------------------------~~g~~---~~~~~~D~~~~~~~~~~~~fD~Vl~D~Pcsg~g~~~~~p~~~ 338 (429)
T 1sqg_A 287 YDNLK-------------------------RLGMK---ATVKQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRHPDIK 338 (429)
T ss_dssp HHHHH-------------------------HTTCC---CEEEECCTTCTHHHHTTCCEEEEEEECCCCCGGGTTTCTTHH
T ss_pred HHHHH-------------------------HcCCC---eEEEeCchhhchhhcccCCCCEEEEeCCCCcccccCCCcchh
Confidence 99987 44543 678888988765 445689999962 223333332
Q ss_pred ---------------HHHHHHHHHhccCCcEEEEEecCH------HHHHHHHHHC-CCceEE
Q psy1420 185 ---------------DKALSEAYRVLKPGGRFLCLEFSH------EEFKSMIESA-GFQYVT 224 (241)
Q Consensus 185 ---------------~~~l~~~~~~LkpgG~l~i~~~~~------~~~~~~l~~~-Gf~~~~ 224 (241)
..+++.+.++|||||++++++.+. +.+...+++. +|..+.
T Consensus 339 ~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs~~~~ene~~v~~~l~~~~~~~~~~ 400 (429)
T 1sqg_A 339 WLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLPEENSLQIKAFLQRTADAELCE 400 (429)
T ss_dssp HHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCCGGGTHHHHHHHHHHCTTCEECS
T ss_pred hcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChhhHHHHHHHHHHhCCCCEEeC
Confidence 478999999999999999877443 4566777765 576654
No 226
>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*
Probab=99.04 E-value=9.3e-10 Score=97.74 Aligned_cols=130 Identities=18% Similarity=0.195 Sum_probs=89.9
Q ss_pred CCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCC
Q psy1420 43 HDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPI 122 (241)
Q Consensus 43 ~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~ 122 (241)
++.+|||+|||+|..+ ..++. . ....+++++|+++.+++.+++++..+
T Consensus 77 ~~~~VLdiG~G~G~~~-------------~~l~~--------~---------~~~~~v~~vDid~~~i~~ar~~~~~~-- 124 (314)
T 1uir_A 77 EPKRVLIVGGGEGATL-------------REVLK--------H---------PTVEKAVMVDIDGELVEVAKRHMPEW-- 124 (314)
T ss_dssp CCCEEEEEECTTSHHH-------------HHHTT--------S---------TTCCEEEEEESCHHHHHHHHHHCHHH--
T ss_pred CCCeEEEEcCCcCHHH-------------HHHHh--------c---------CCCCEEEEEECCHHHHHHHHHHhHhh--
Confidence 4569999999999988 44433 1 02468999999999999999876410
Q ss_pred ccccccccceecceeeeeeccccC-CCCCCeeEEecccCC-CCCCCCceeEEeeeehhhc---cc--c--HHHHHHHHHH
Q psy1420 123 ESDSYSAYTIAFGIRNVTRIDKID-IPNPRLRFLEANAEE-LPIESDSYSAYTIAFGIRN---VT--R--IDKALSEAYR 193 (241)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~~~-~~~~~~~~D~V~~~~~l~~---~~--~--~~~~l~~~~~ 193 (241)
..+ +..++++++.+|+.. ++...++||+|++....+. .+ . ...+++++.+
T Consensus 125 ---------------------~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~d~~~~~~~~~~~~~l~~~~~l~~~~~ 183 (314)
T 1uir_A 125 ---------------------HQGAFDDPRAVLVIDDARAYLERTEERYDVVIIDLTDPVGEDNPARLLYTVEFYRLVKA 183 (314)
T ss_dssp ---------------------HTTGGGCTTEEEEESCHHHHHHHCCCCEEEEEEECCCCBSTTCGGGGGSSHHHHHHHHH
T ss_pred ---------------------ccccccCCceEEEEchHHHHHHhcCCCccEEEECCCCcccccCcchhccHHHHHHHHHH
Confidence 011 112478999999876 3334578999998765543 11 1 3689999999
Q ss_pred hccCCcEEEEEecC-----H---HHHHHHHHHCCCceEEEE
Q psy1420 194 VLKPGGRFLCLEFS-----H---EEFKSMIESAGFQYVTYE 226 (241)
Q Consensus 194 ~LkpgG~l~i~~~~-----~---~~~~~~l~~~Gf~~~~~~ 226 (241)
+|||||++++...+ . ..+.+.+++. |..+...
T Consensus 184 ~LkpgG~lv~~~~~~~~~~~~~~~~~~~~l~~~-F~~v~~~ 223 (314)
T 1uir_A 184 HLNPGGVMGMQTGMILLTHHRVHPVVHRTVREA-FRYVRSY 223 (314)
T ss_dssp TEEEEEEEEEEEEEECC---CHHHHHHHHHHTT-CSEEEEE
T ss_pred hcCCCcEEEEEccCccccCHHHHHHHHHHHHHH-CCceEEE
Confidence 99999999886422 1 4555666666 6665544
No 227
>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}
Probab=99.04 E-value=1.7e-10 Score=98.07 Aligned_cols=106 Identities=15% Similarity=0.073 Sum_probs=81.0
Q ss_pred CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCC
Q psy1420 42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP 121 (241)
Q Consensus 42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~ 121 (241)
.++.+|||+|||+|..+ ..++. .+. ...+++++|+++.+++.+++++.
T Consensus 69 ~~~~~VLeiG~G~G~~~-------------~~la~----~~~------------~~~~v~~iD~~~~~~~~a~~~~~--- 116 (237)
T 3c3y_A 69 VNAKKTIEVGVFTGYSL-------------LLTAL----SIP------------DDGKITAIDFDREAYEIGLPFIR--- 116 (237)
T ss_dssp TTCCEEEEECCTTSHHH-------------HHHHH----HSC------------TTCEEEEEESCHHHHHHHHHHHH---
T ss_pred hCCCEEEEeCCCCCHHH-------------HHHHH----hCC------------CCCEEEEEECCHHHHHHHHHHHH---
Confidence 45669999999999988 44433 110 25689999999999999999987
Q ss_pred CccccccccceecceeeeeeccccCCCCCCeeEEecccCCC-C-C-----CCCceeEEeeeehhhccccHHHHHHHHHHh
Q psy1420 122 IESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL-P-I-----ESDSYSAYTIAFGIRNVTRIDKALSEAYRV 194 (241)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~-~-----~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~ 194 (241)
+.++. ++++++.+|+.+. + . +.++||+|++... ..+....++.+.++
T Consensus 117 ----------------------~~g~~-~~i~~~~gda~~~l~~l~~~~~~~~~fD~I~~d~~---~~~~~~~l~~~~~~ 170 (237)
T 3c3y_A 117 ----------------------KAGVE-HKINFIESDAMLALDNLLQGQESEGSYDFGFVDAD---KPNYIKYHERLMKL 170 (237)
T ss_dssp ----------------------HTTCG-GGEEEEESCHHHHHHHHHHSTTCTTCEEEEEECSC---GGGHHHHHHHHHHH
T ss_pred ----------------------HcCCC-CcEEEEEcCHHHHHHHHHhccCCCCCcCEEEECCc---hHHHHHHHHHHHHh
Confidence 55654 4689999987653 2 1 1468999997632 34567899999999
Q ss_pred ccCCcEEEEEe
Q psy1420 195 LKPGGRFLCLE 205 (241)
Q Consensus 195 LkpgG~l~i~~ 205 (241)
|+|||++++.+
T Consensus 171 L~pGG~lv~d~ 181 (237)
T 3c3y_A 171 VKVGGIVAYDN 181 (237)
T ss_dssp EEEEEEEEEEC
T ss_pred cCCCeEEEEec
Confidence 99999998854
No 228
>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*
Probab=99.03 E-value=6.2e-10 Score=101.24 Aligned_cols=125 Identities=22% Similarity=0.176 Sum_probs=92.9
Q ss_pred CCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCC
Q psy1420 43 HDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPI 122 (241)
Q Consensus 43 ~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~ 122 (241)
++.+|||+|||+|..+ ..++. ...+++++|+++.+++.+++++.
T Consensus 209 ~~~~VLDlg~G~G~~~-------------~~la~-------------------~~~~v~~vD~s~~~~~~a~~n~~---- 252 (382)
T 1wxx_A 209 RGERALDVFSYAGGFA-------------LHLAL-------------------GFREVVAVDSSAEALRRAEENAR---- 252 (382)
T ss_dssp CEEEEEEETCTTTHHH-------------HHHHH-------------------HEEEEEEEESCHHHHHHHHHHHH----
T ss_pred CCCeEEEeeeccCHHH-------------HHHHH-------------------hCCEEEEEECCHHHHHHHHHHHH----
Confidence 6779999999999998 44444 23579999999999999999988
Q ss_pred ccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCC----CCCceeEEeeeeh---------hhccccHHHHHH
Q psy1420 123 ESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPI----ESDSYSAYTIAFG---------IRNVTRIDKALS 189 (241)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~----~~~~~D~V~~~~~---------l~~~~~~~~~l~ 189 (241)
..++. +++++++|+.+... ...+||+|++.-. .........++.
T Consensus 253 ---------------------~n~~~--~~~~~~~d~~~~~~~~~~~~~~fD~Ii~dpP~~~~~~~~~~~~~~~~~~~l~ 309 (382)
T 1wxx_A 253 ---------------------LNGLG--NVRVLEANAFDLLRRLEKEGERFDLVVLDPPAFAKGKKDVERAYRAYKEVNL 309 (382)
T ss_dssp ---------------------HTTCT--TEEEEESCHHHHHHHHHHTTCCEEEEEECCCCSCCSTTSHHHHHHHHHHHHH
T ss_pred ---------------------HcCCC--CceEEECCHHHHHHHHHhcCCCeeEEEECCCCCCCChhHHHHHHHHHHHHHH
Confidence 55655 48899999876421 1468999998421 122345678999
Q ss_pred HHHHhccCCcEEEEEecCH--------HHHHHHHHHCCCceEEEE
Q psy1420 190 EAYRVLKPGGRFLCLEFSH--------EEFKSMIESAGFQYVTYE 226 (241)
Q Consensus 190 ~~~~~LkpgG~l~i~~~~~--------~~~~~~l~~~Gf~~~~~~ 226 (241)
.+.++|+|||.+++.+.+. +.+.+.+.++|.....+.
T Consensus 310 ~~~~~LkpgG~l~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~i~ 354 (382)
T 1wxx_A 310 RAIKLLKEGGILATASCSHHMTEPLFYAMVAEAAQDAHRLLRVVE 354 (382)
T ss_dssp HHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 9999999999999987654 344556677886554443
No 229
>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}
Probab=99.03 E-value=1.3e-09 Score=99.87 Aligned_cols=127 Identities=13% Similarity=0.082 Sum_probs=89.3
Q ss_pred CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCC
Q psy1420 42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP 121 (241)
Q Consensus 42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~ 121 (241)
+++.+|||+|||+|.++ ..++. ....++++|+|+.+++.+++++.
T Consensus 213 ~~g~~VLDlg~GtG~~s-------------l~~a~-------------------~ga~V~avDis~~al~~a~~n~~--- 257 (393)
T 4dmg_A 213 RPGERVLDVYSYVGGFA-------------LRAAR-------------------KGAYALAVDKDLEALGVLDQAAL--- 257 (393)
T ss_dssp CTTCEEEEESCTTTHHH-------------HHHHH-------------------TTCEEEEEESCHHHHHHHHHHHH---
T ss_pred cCCCeEEEcccchhHHH-------------HHHHH-------------------cCCeEEEEECCHHHHHHHHHHHH---
Confidence 35789999999999998 44443 23449999999999999999987
Q ss_pred CccccccccceecceeeeeeccccCCCCCCeeEEecccCCC-CCCCCceeEEeeeehh---------hccccHHHHHHHH
Q psy1420 122 IESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL-PIESDSYSAYTIAFGI---------RNVTRIDKALSEA 191 (241)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~D~V~~~~~l---------~~~~~~~~~l~~~ 191 (241)
..++. .++.++|+.+. +...+.||+|++.-.. ....+...++..+
T Consensus 258 ----------------------~ng~~---~~~~~~D~~~~l~~~~~~fD~Ii~dpP~f~~~~~~~~~~~~~~~~ll~~a 312 (393)
T 4dmg_A 258 ----------------------RLGLR---VDIRHGEALPTLRGLEGPFHHVLLDPPTLVKRPEELPAMKRHLVDLVREA 312 (393)
T ss_dssp ----------------------HHTCC---CEEEESCHHHHHHTCCCCEEEEEECCCCCCSSGGGHHHHHHHHHHHHHHH
T ss_pred ----------------------HhCCC---CcEEEccHHHHHHHhcCCCCEEEECCCcCCCCHHHHHHHHHHHHHHHHHH
Confidence 55554 24567887654 1213349999975322 1123556889999
Q ss_pred HHhccCCcEEEEEecCH--------HHHHHHHHHCCCceEEEEEe
Q psy1420 192 YRVLKPGGRFLCLEFSH--------EEFKSMIESAGFQYVTYENL 228 (241)
Q Consensus 192 ~~~LkpgG~l~i~~~~~--------~~~~~~l~~~Gf~~~~~~~~ 228 (241)
.++|+|||+|++.+.+. +.+.+.+..+|....-....
T Consensus 313 ~~~LkpGG~Lv~~s~s~~~~~~~f~~~v~~a~~~~g~~~~i~~~~ 357 (393)
T 4dmg_A 313 LRLLAEEGFLWLSSCSYHLRLEDLLEVARRAAADLGRRLRVHRVT 357 (393)
T ss_dssp HHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHHTCCEEEEEEE
T ss_pred HHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHHhCCeEEEEEEc
Confidence 99999999999777655 34555666777665544433
No 230
>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*
Probab=99.03 E-value=1.5e-09 Score=96.20 Aligned_cols=132 Identities=15% Similarity=0.184 Sum_probs=87.3
Q ss_pred CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCC
Q psy1420 42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP 121 (241)
Q Consensus 42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~ 121 (241)
.++.+|||+|||+|..+ ..++. . ....+++++|+++.+++.+++++..+
T Consensus 94 ~~~~~VLdiG~G~G~~~-------------~~l~~--------~---------~~~~~v~~vDid~~~i~~ar~~~~~~- 142 (304)
T 2o07_A 94 PNPRKVLIIGGGDGGVL-------------REVVK--------H---------PSVESVVQCEIDEDVIQVSKKFLPGM- 142 (304)
T ss_dssp SSCCEEEEEECTTSHHH-------------HHHTT--------C---------TTCCEEEEEESCHHHHHHHHHHCHHH-
T ss_pred CCCCEEEEECCCchHHH-------------HHHHH--------c---------CCCCEEEEEECCHHHHHHHHHHhHHh-
Confidence 45579999999999988 44433 1 02468999999999999999876510
Q ss_pred CccccccccceecceeeeeeccccCCCCCCeeEEecccCC-CCCCCCceeEEeeeehhhccc----cHHHHHHHHHHhcc
Q psy1420 122 IESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEE-LPIESDSYSAYTIAFGIRNVT----RIDKALSEAYRVLK 196 (241)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~D~V~~~~~l~~~~----~~~~~l~~~~~~Lk 196 (241)
..++..++++++.+|+.. ++...++||+|++....+..+ ....+++++.++|+
T Consensus 143 ----------------------~~~~~~~rv~v~~~Da~~~l~~~~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~Lk 200 (304)
T 2o07_A 143 ----------------------AIGYSSSKLTLHVGDGFEFMKQNQDAFDVIITDSSDPMGPAESLFKESYYQLMKTALK 200 (304)
T ss_dssp ----------------------HGGGGCTTEEEEESCHHHHHHTCSSCEEEEEEECC-----------CHHHHHHHHHEE
T ss_pred ----------------------hcccCCCcEEEEECcHHHHHhhCCCCceEEEECCCCCCCcchhhhHHHHHHHHHhccC
Confidence 012212578999999765 333457899999865433221 12478999999999
Q ss_pred CCcEEEEEecCH-------HHHHHHHHHCCCceEEEEE
Q psy1420 197 PGGRFLCLEFSH-------EEFKSMIESAGFQYVTYEN 227 (241)
Q Consensus 197 pgG~l~i~~~~~-------~~~~~~l~~~Gf~~~~~~~ 227 (241)
|||++++...+. ..+.+.+++. |..++...
T Consensus 201 pgG~lv~~~~~~~~~~~~~~~~~~~l~~~-f~~v~~~~ 237 (304)
T 2o07_A 201 EDGVLCCQGECQWLHLDLIKEMRQFCQSL-FPVVAYAY 237 (304)
T ss_dssp EEEEEEEEEECTTTCHHHHHHHHHHHHHH-CSEEEEEE
T ss_pred CCeEEEEecCCcccchHHHHHHHHHHHHh-CCCceeEE
Confidence 999999865331 3344444444 76666553
No 231
>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*
Probab=99.02 E-value=7.5e-10 Score=99.15 Aligned_cols=120 Identities=12% Similarity=0.170 Sum_probs=92.6
Q ss_pred CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCC
Q psy1420 42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP 121 (241)
Q Consensus 42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~ 121 (241)
.++.+|||+|||+|.++ .. +. ...+++++|+++.+++.+++++.
T Consensus 194 ~~~~~VLDlg~G~G~~~-------------l~-a~-------------------~~~~V~~vD~s~~ai~~a~~n~~--- 237 (336)
T 2yx1_A 194 SLNDVVVDMFAGVGPFS-------------IA-CK-------------------NAKKIYAIDINPHAIELLKKNIK--- 237 (336)
T ss_dssp CTTCEEEETTCTTSHHH-------------HH-TT-------------------TSSEEEEEESCHHHHHHHHHHHH---
T ss_pred CCCCEEEEccCccCHHH-------------Hh-cc-------------------CCCEEEEEECCHHHHHHHHHHHH---
Confidence 46789999999999988 33 32 35679999999999999999988
Q ss_pred CccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHHHHHHhccCCcEE
Q psy1420 122 IESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRF 201 (241)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l 201 (241)
..++. ++++++++|+.... ++||+|++...- ....++..+.++|+|||.+
T Consensus 238 ----------------------~n~l~-~~v~~~~~D~~~~~---~~fD~Vi~dpP~----~~~~~l~~~~~~L~~gG~l 287 (336)
T 2yx1_A 238 ----------------------LNKLE-HKIIPILSDVREVD---VKGNRVIMNLPK----FAHKFIDKALDIVEEGGVI 287 (336)
T ss_dssp ----------------------HTTCT-TTEEEEESCGGGCC---CCEEEEEECCTT----TGGGGHHHHHHHEEEEEEE
T ss_pred ----------------------HcCCC-CcEEEEECChHHhc---CCCcEEEECCcH----hHHHHHHHHHHHcCCCCEE
Confidence 55654 47899999998775 789999985321 1237888999999999999
Q ss_pred EEEecCH--HHHHHHHHHC-CCceEEEEE
Q psy1420 202 LCLEFSH--EEFKSMIESA-GFQYVTYEN 227 (241)
Q Consensus 202 ~i~~~~~--~~~~~~l~~~-Gf~~~~~~~ 227 (241)
++.+++. +.+.+.++++ |+.+.....
T Consensus 288 ~~~~~~~~~~~~~~~l~~~~~~~i~~~~~ 316 (336)
T 2yx1_A 288 HYYTIGKDFDKAIKLFEKKCDCEVLEKRI 316 (336)
T ss_dssp EEEEEESSSHHHHHHHHHHSEEEEEEEEE
T ss_pred EEEEeecCchHHHHHHHHhcCCcEEEEEE
Confidence 8876655 6667777777 776544443
No 232
>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*
Probab=99.02 E-value=1e-10 Score=102.46 Aligned_cols=113 Identities=9% Similarity=-0.010 Sum_probs=74.4
Q ss_pred HHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHH
Q psy1420 34 IFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFL 113 (241)
Q Consensus 34 ~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~ 113 (241)
.+.+....+++.+|||+|||+|.++ ..++. . ..++++|+++ +...+
T Consensus 73 ~i~~~~~~~~g~~VLDlGcGtG~~s-------------~~la~-------------------~-~~V~gVD~s~-m~~~a 118 (276)
T 2wa2_A 73 WIDERGGVELKGTVVDLGCGRGSWS-------------YYAAS-------------------Q-PNVREVKAYT-LGTSG 118 (276)
T ss_dssp HHHHTTSCCCCEEEEEESCTTCHHH-------------HHHHT-------------------S-TTEEEEEEEC-CCCTT
T ss_pred HHHHcCCCCCCCEEEEeccCCCHHH-------------HHHHH-------------------c-CCEEEEECch-hhhhh
Confidence 3334434467889999999999998 33333 2 5799999998 53221
Q ss_pred HHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEE--ecccCCCCCCCCceeEEeeeehhhcccc-----H--
Q psy1420 114 EANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFL--EANAEELPIESDSYSAYTIAFGIRNVTR-----I-- 184 (241)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~d~~~~~~~~~~~D~V~~~~~l~~~~~-----~-- 184 (241)
..... ...... .++.++ ++|+..+| +++||+|+|..+ +...+ .
T Consensus 119 ~~~~~------------------------~~~~~~-~~v~~~~~~~D~~~l~--~~~fD~Vvsd~~-~~~~~~~~d~~~~ 170 (276)
T 2wa2_A 119 HEKPR------------------------LVETFG-WNLITFKSKVDVTKME--PFQADTVLCDIG-ESNPTAAVEASRT 170 (276)
T ss_dssp SCCCC------------------------CCCCTT-GGGEEEECSCCGGGCC--CCCCSEEEECCC-CCCSCHHHHHHHH
T ss_pred hhchh------------------------hhhhcC-CCeEEEeccCcHhhCC--CCCcCEEEECCC-cCCCchhhhHHHH
Confidence 11000 000000 157888 88988876 578999999876 33222 1
Q ss_pred HHHHHHHHHhccCCc--EEEEEecCH
Q psy1420 185 DKALSEAYRVLKPGG--RFLCLEFSH 208 (241)
Q Consensus 185 ~~~l~~~~~~LkpgG--~l~i~~~~~ 208 (241)
..+|+.+.++||||| .+++..+..
T Consensus 171 l~~L~~~~r~LkpGG~~~~v~~~~~~ 196 (276)
T 2wa2_A 171 LTVLNVISRWLEYNQGCGFCVKVLNP 196 (276)
T ss_dssp HHHHHHHHHHHHHSTTCEEEEEESCC
T ss_pred HHHHHHHHHHhccCCCcEEEEEeCCC
Confidence 147899999999999 998876654
No 233
>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A
Probab=99.01 E-value=9.8e-10 Score=95.39 Aligned_cols=133 Identities=11% Similarity=-0.019 Sum_probs=90.1
Q ss_pred CCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCC
Q psy1420 43 HDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPI 122 (241)
Q Consensus 43 ~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~ 122 (241)
.+.+|||+|||+|..+ ..++. .. .+++++|+++.+++.+++.+..+
T Consensus 72 ~~~~VL~iG~G~G~~~-------------~~ll~------------------~~-~~v~~veid~~~i~~ar~~~~~~-- 117 (262)
T 2cmg_A 72 ELKEVLIVDGFDLELA-------------HQLFK------------------YD-THIDFVQADEKILDSFISFFPHF-- 117 (262)
T ss_dssp CCCEEEEESSCCHHHH-------------HHHTT------------------SS-CEEEEECSCHHHHGGGTTTSTTH--
T ss_pred CCCEEEEEeCCcCHHH-------------HHHHh------------------CC-CEEEEEECCHHHHHHHHHHHHhh--
Confidence 4569999999999988 54444 12 57999999999999987654300
Q ss_pred ccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHHHHHHhccCCcEEE
Q psy1420 123 ESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFL 202 (241)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~ 202 (241)
..++..++++++.+|+.... ++||+|++. ..++..+++.+.++|+|||+++
T Consensus 118 ---------------------~~~~~~~rv~~~~~D~~~~~---~~fD~Ii~d-----~~dp~~~~~~~~~~L~pgG~lv 168 (262)
T 2cmg_A 118 ---------------------HEVKNNKNFTHAKQLLDLDI---KKYDLIFCL-----QEPDIHRIDGLKRMLKEDGVFI 168 (262)
T ss_dssp ---------------------HHHHTCTTEEEESSGGGSCC---CCEEEEEES-----SCCCHHHHHHHHTTEEEEEEEE
T ss_pred ---------------------ccccCCCeEEEEechHHHHH---hhCCEEEEC-----CCChHHHHHHHHHhcCCCcEEE
Confidence 00112247889999987754 689999975 3466679999999999999999
Q ss_pred EEecCH----HHHH---HHHHHCCCceEEEEEec---CceeEEEeee
Q psy1420 203 CLEFSH----EEFK---SMIESAGFQYVTYENLT---FGVVAIHSGF 239 (241)
Q Consensus 203 i~~~~~----~~~~---~~l~~~Gf~~~~~~~~~---~~~~~~~~~~ 239 (241)
+...+. ..+. ..+++. |..+...... .|..++..+.
T Consensus 169 ~~~~~~~~~~~~~~~~~~~l~~~-F~~~~~~~~~vP~~g~~~~~~as 214 (262)
T 2cmg_A 169 SVAKHPLLEHVSMQNALKNMGGV-FSVAMPFVAPLRILSNKGYIYAS 214 (262)
T ss_dssp EEEECTTTCHHHHHHHHHHHHTT-CSEEEEECCTTCTTCCEEEEEEE
T ss_pred EEcCCcccCHHHHHHHHHHHHHh-CCceEEEEEccCCCcccEEEEee
Confidence 864332 2333 334443 7766554432 3555554444
No 234
>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*
Probab=99.01 E-value=4.2e-10 Score=110.26 Aligned_cols=128 Identities=12% Similarity=0.124 Sum_probs=95.7
Q ss_pred CCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCC
Q psy1420 43 HDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPI 122 (241)
Q Consensus 43 ~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~ 122 (241)
++.+|||+|||+|.++ ..++. ....+++++|+|+.+++.+++++.
T Consensus 539 ~g~~VLDlg~GtG~~s-------------l~aa~------------------~ga~~V~aVD~s~~al~~a~~N~~---- 583 (703)
T 3v97_A 539 KGKDFLNLFSYTGSAT-------------VHAGL------------------GGARSTTTVDMSRTYLEWAERNLR---- 583 (703)
T ss_dssp TTCEEEEESCTTCHHH-------------HHHHH------------------TTCSEEEEEESCHHHHHHHHHHHH----
T ss_pred CCCcEEEeeechhHHH-------------HHHHH------------------CCCCEEEEEeCCHHHHHHHHHHHH----
Confidence 5779999999999988 43332 023469999999999999999988
Q ss_pred ccccccccceecceeeeeeccccCCCCCCeeEEecccCC-CCCCCCceeEEeeee-----------hhhccccHHHHHHH
Q psy1420 123 ESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEE-LPIESDSYSAYTIAF-----------GIRNVTRIDKALSE 190 (241)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~D~V~~~~-----------~l~~~~~~~~~l~~ 190 (241)
..++..++++++++|+.. ++...++||+|++.- .+....+....+..
T Consensus 584 ---------------------~ngl~~~~v~~i~~D~~~~l~~~~~~fD~Ii~DPP~f~~~~~~~~~~~~~~~~~~ll~~ 642 (703)
T 3v97_A 584 ---------------------LNGLTGRAHRLIQADCLAWLREANEQFDLIFIDPPTFSNSKRMEDAFDVQRDHLALMKD 642 (703)
T ss_dssp ---------------------HTTCCSTTEEEEESCHHHHHHHCCCCEEEEEECCCSBC-------CCBHHHHHHHHHHH
T ss_pred ---------------------HcCCCccceEEEecCHHHHHHhcCCCccEEEECCccccCCccchhHHHHHHHHHHHHHH
Confidence 556653479999999876 333457899999853 22334567788999
Q ss_pred HHHhccCCcEEEEEecCH--HHHHHHHHHCCCceEEEE
Q psy1420 191 AYRVLKPGGRFLCLEFSH--EEFKSMIESAGFQYVTYE 226 (241)
Q Consensus 191 ~~~~LkpgG~l~i~~~~~--~~~~~~l~~~Gf~~~~~~ 226 (241)
+.++|+|||+|++...+. ..-.+.+++.||+...+.
T Consensus 643 a~~~LkpgG~L~~s~~~~~~~~~~~~l~~~g~~~~~i~ 680 (703)
T 3v97_A 643 LKRLLRAGGTIMFSNNKRGFRMDLDGLAKLGLKAQEIT 680 (703)
T ss_dssp HHHHEEEEEEEEEEECCTTCCCCHHHHHHTTEEEEECT
T ss_pred HHHhcCCCcEEEEEECCcccccCHHHHHHcCCceeeee
Confidence 999999999999876552 223567888998754443
No 235
>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}
Probab=99.00 E-value=1.3e-10 Score=101.07 Aligned_cols=113 Identities=8% Similarity=-0.014 Sum_probs=74.2
Q ss_pred HHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHH
Q psy1420 34 IFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFL 113 (241)
Q Consensus 34 ~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~ 113 (241)
.+.+....+++.+|||+|||+|.++ ..++. . ..++++|+++ +...+
T Consensus 65 ~i~~~~~~~~g~~VLDlGcGtG~~s-------------~~la~-------------------~-~~V~gvD~s~-m~~~a 110 (265)
T 2oxt_A 65 WMEERGYVELTGRVVDLGCGRGGWS-------------YYAAS-------------------R-PHVMDVRAYT-LGVGG 110 (265)
T ss_dssp HHHHHTSCCCCEEEEEESCTTSHHH-------------HHHHT-------------------S-TTEEEEEEEC-CCCSS
T ss_pred HHHHcCCCCCCCEEEEeCcCCCHHH-------------HHHHH-------------------c-CcEEEEECch-hhhhh
Confidence 3444444567889999999999998 33333 2 5799999988 42211
Q ss_pred HHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEE--ecccCCCCCCCCceeEEeeeehhhccccH-------
Q psy1420 114 EANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFL--EANAEELPIESDSYSAYTIAFGIRNVTRI------- 184 (241)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~d~~~~~~~~~~~D~V~~~~~l~~~~~~------- 184 (241)
..... . ....+ .++.++ ++|+..++ +++||+|+|..+ +...++
T Consensus 111 ~~~~~----~------------------~~~~~---~~v~~~~~~~D~~~l~--~~~fD~V~sd~~-~~~~~~~~d~~~~ 162 (265)
T 2oxt_A 111 HEVPR----I------------------TESYG---WNIVKFKSRVDIHTLP--VERTDVIMCDVG-ESSPKWSVESERT 162 (265)
T ss_dssp CCCCC----C------------------CCBTT---GGGEEEECSCCTTTSC--CCCCSEEEECCC-CCCSCHHHHHHHH
T ss_pred hhhhh----h------------------hhccC---CCeEEEecccCHhHCC--CCCCcEEEEeCc-ccCCccchhHHHH
Confidence 10000 0 00001 147788 88988876 578999999766 332221
Q ss_pred HHHHHHHHHhccCCc--EEEEEecCH
Q psy1420 185 DKALSEAYRVLKPGG--RFLCLEFSH 208 (241)
Q Consensus 185 ~~~l~~~~~~LkpgG--~l~i~~~~~ 208 (241)
..+|..+.++||||| .+++..+..
T Consensus 163 l~~L~~~~r~LkpGG~~~fv~kv~~~ 188 (265)
T 2oxt_A 163 IKILELLEKWKVKNPSADFVVKVLCP 188 (265)
T ss_dssp HHHHHHHHHHHHHCTTCEEEEEESCT
T ss_pred HHHHHHHHHHhccCCCeEEEEEeCCC
Confidence 138899999999999 999877654
No 236
>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45
Probab=99.00 E-value=1.2e-09 Score=97.68 Aligned_cols=128 Identities=16% Similarity=0.172 Sum_probs=90.6
Q ss_pred CCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhc
Q psy1420 40 GPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEE 119 (241)
Q Consensus 40 ~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~ 119 (241)
.+.++.+|||+|||+|.++ ..+.. .+..... ....++|+|+++.+++.++.++.
T Consensus 127 ~~~~~~~VlDp~cGsG~~l-------------~~~~~----~~~~~~~--------~~~~v~GiDi~~~~~~~a~~n~~- 180 (344)
T 2f8l_A 127 QKKKNVSILDPACGTANLL-------------TTVIN----QLELKGD--------VDVHASGVDVDDLLISLALVGAD- 180 (344)
T ss_dssp TTCSEEEEEETTCTTSHHH-------------HHHHH----HHHTTSS--------CEEEEEEEESCHHHHHHHHHHHH-
T ss_pred CCCCCCEEEeCCCCccHHH-------------HHHHH----HHHHhcC--------CCceEEEEECCHHHHHHHHHHHH-
Confidence 4456789999999999987 43333 1111000 12579999999999999998876
Q ss_pred CCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccH---------------
Q psy1420 120 LPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRI--------------- 184 (241)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~--------------- 184 (241)
..++ ++.+.++|..... ..++||+|+++-.+.+++..
T Consensus 181 ------------------------~~g~---~~~i~~~D~l~~~-~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~g~~ 232 (344)
T 2f8l_A 181 ------------------------LQRQ---KMTLLHQDGLANL-LVDPVDVVISDLPVGYYPDDENAKTFELCREEGHS 232 (344)
T ss_dssp ------------------------HHTC---CCEEEESCTTSCC-CCCCEEEEEEECCCSEESCHHHHTTSTTCCSSSCE
T ss_pred ------------------------hCCC---CceEEECCCCCcc-ccCCccEEEECCCCCCcCchhhhhhccccCCCCcc
Confidence 3333 3677888876532 35689999998665444322
Q ss_pred ---HHHHHHHHHhccCCcEEEEEecC-------HHHHHHHHHHCCCc
Q psy1420 185 ---DKALSEAYRVLKPGGRFLCLEFS-------HEEFKSMIESAGFQ 221 (241)
Q Consensus 185 ---~~~l~~~~~~LkpgG~l~i~~~~-------~~~~~~~l~~~Gf~ 221 (241)
..++..+.+.|+|||+++++... ...+++++.+.|+.
T Consensus 233 ~~~~~~l~~~~~~Lk~gG~~~~v~p~~~~~~~~~~~ir~~l~~~~~~ 279 (344)
T 2f8l_A 233 FAHFLFIEQGMRYTKPGGYLFFLVPDAMFGTSDFAKVDKFIKKNGHI 279 (344)
T ss_dssp EHHHHHHHHHHHTEEEEEEEEEEEEGGGGGSTTHHHHHHHHHHHEEE
T ss_pred hHHHHHHHHHHHHhCCCCEEEEEECchhcCCchHHHHHHHHHhCCeE
Confidence 25799999999999999887622 27888888888763
No 237
>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A
Probab=98.99 E-value=5.7e-10 Score=100.19 Aligned_cols=110 Identities=15% Similarity=0.213 Sum_probs=78.6
Q ss_pred CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCC
Q psy1420 42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP 121 (241)
Q Consensus 42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~ 121 (241)
.++.+|||+|||+|..+ ..++. . ....+++++|+++.+++.+++++..+
T Consensus 119 ~~~~~VLdIG~G~G~~a-------------~~la~--------~---------~~~~~V~~VDis~~~l~~Ar~~~~~~- 167 (334)
T 1xj5_A 119 PNPKKVLVIGGGDGGVL-------------REVAR--------H---------ASIEQIDMCEIDKMVVDVSKQFFPDV- 167 (334)
T ss_dssp SCCCEEEEETCSSSHHH-------------HHHTT--------C---------TTCCEEEEEESCHHHHHHHHHHCHHH-
T ss_pred CCCCEEEEECCCccHHH-------------HHHHH--------c---------CCCCEEEEEECCHHHHHHHHHHHHhh-
Confidence 45579999999999988 44433 1 02468999999999999999876510
Q ss_pred CccccccccceecceeeeeeccccCCCCCCeeEEecccCCC--CCCCCceeEEeeeehh--hcccc--HHHHHHHHHHhc
Q psy1420 122 IESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL--PIESDSYSAYTIAFGI--RNVTR--IDKALSEAYRVL 195 (241)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~D~V~~~~~l--~~~~~--~~~~l~~~~~~L 195 (241)
..++..++++++.+|+... ..+.++||+|++.... +.... ...+++.+.++|
T Consensus 168 ----------------------~~gl~~~rv~~~~~D~~~~l~~~~~~~fDlIi~d~~~p~~~~~~l~~~~~l~~~~~~L 225 (334)
T 1xj5_A 168 ----------------------AIGYEDPRVNLVIGDGVAFLKNAAEGSYDAVIVDSSDPIGPAKELFEKPFFQSVARAL 225 (334)
T ss_dssp ----------------------HGGGGSTTEEEEESCHHHHHHTSCTTCEEEEEECCCCTTSGGGGGGSHHHHHHHHHHE
T ss_pred ----------------------ccccCCCcEEEEECCHHHHHHhccCCCccEEEECCCCccCcchhhhHHHHHHHHHHhc
Confidence 0122224789999997653 2335689999986432 11111 368999999999
Q ss_pred cCCcEEEEE
Q psy1420 196 KPGGRFLCL 204 (241)
Q Consensus 196 kpgG~l~i~ 204 (241)
+|||++++.
T Consensus 226 kpgG~lv~~ 234 (334)
T 1xj5_A 226 RPGGVVCTQ 234 (334)
T ss_dssp EEEEEEEEE
T ss_pred CCCcEEEEe
Confidence 999999985
No 238
>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0
Probab=98.97 E-value=1e-09 Score=90.62 Aligned_cols=114 Identities=14% Similarity=0.206 Sum_probs=78.3
Q ss_pred CCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcC
Q psy1420 41 PTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEEL 120 (241)
Q Consensus 41 ~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~ 120 (241)
.+++.+|||+|||+|.++ ..++. ....++++|+++.. .
T Consensus 23 ~~~g~~VLDlG~G~G~~s-------------~~la~-------------------~~~~V~gvD~~~~~--------~-- 60 (191)
T 3dou_A 23 VRKGDAVIEIGSSPGGWT-------------QVLNS-------------------LARKIISIDLQEME--------E-- 60 (191)
T ss_dssp SCTTCEEEEESCTTCHHH-------------HHHTT-------------------TCSEEEEEESSCCC--------C--
T ss_pred CCCCCEEEEEeecCCHHH-------------HHHHH-------------------cCCcEEEEeccccc--------c--
Confidence 367889999999999998 33333 25679999998741 0
Q ss_pred CCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCC-------C----CceeEEeeeehhh-----c----
Q psy1420 121 PIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIE-------S----DSYSAYTIAFGIR-----N---- 180 (241)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-------~----~~~D~V~~~~~l~-----~---- 180 (241)
. ++++++++|+.+.+.. . ++||+|++..... .
T Consensus 61 --------------------------~--~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~D~Vlsd~~~~~~g~~~~d~~ 112 (191)
T 3dou_A 61 --------------------------I--AGVRFIRCDIFKETIFDDIDRALREEGIEKVDDVVSDAMAKVSGIPSRDHA 112 (191)
T ss_dssp --------------------------C--TTCEEEECCTTSSSHHHHHHHHHHHHTCSSEEEEEECCCCCCCSCHHHHHH
T ss_pred --------------------------C--CCeEEEEccccCHHHHHHHHHHhhcccCCcceEEecCCCcCCCCCcccCHH
Confidence 0 2578899998876421 1 4899999854221 1
Q ss_pred --cccHHHHHHHHHHhccCCcEEEEEecCHH---HHHHHHHHCCCceEEE
Q psy1420 181 --VTRIDKALSEAYRVLKPGGRFLCLEFSHE---EFKSMIESAGFQYVTY 225 (241)
Q Consensus 181 --~~~~~~~l~~~~~~LkpgG~l~i~~~~~~---~~~~~l~~~Gf~~~~~ 225 (241)
......+++.+.++|||||.|++..+..+ ++...++. .|..+++
T Consensus 113 ~~~~l~~~~l~~a~~~LkpGG~lv~k~~~~~~~~~~~~~l~~-~F~~v~~ 161 (191)
T 3dou_A 113 VSYQIGQRVMEIAVRYLRNGGNVLLKQFQGDMTNDFIAIWRK-NFSSYKI 161 (191)
T ss_dssp HHHHHHHHHHHHHHHHEEEEEEEEEEEECSTHHHHHHHHHGG-GEEEEEE
T ss_pred HHHHHHHHHHHHHHHHccCCCEEEEEEcCCCCHHHHHHHHHH-hcCEEEE
Confidence 11235788999999999999998877663 44444533 3665554
No 239
>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*
Probab=98.97 E-value=9.7e-09 Score=94.98 Aligned_cols=136 Identities=12% Similarity=0.113 Sum_probs=95.1
Q ss_pred HHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhH
Q psy1420 31 WKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRL 110 (241)
Q Consensus 31 ~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~ 110 (241)
+.+.+++.+...++.+|||+|||+|.++ ..++. ...+++++|+++.++
T Consensus 274 l~~~~~~~l~~~~~~~VLDlgcG~G~~~-------------~~la~-------------------~~~~V~gvD~s~~al 321 (433)
T 1uwv_A 274 MVARALEWLDVQPEDRVLDLFCGMGNFT-------------LPLAT-------------------QAASVVGVEGVPALV 321 (433)
T ss_dssp HHHHHHHHHTCCTTCEEEEESCTTTTTH-------------HHHHT-------------------TSSEEEEEESCHHHH
T ss_pred HHHHHHHhhcCCCCCEEEECCCCCCHHH-------------HHHHh-------------------hCCEEEEEeCCHHHH
Confidence 4455666666677889999999999998 44443 356899999999999
Q ss_pred HHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCC----CCCCCCceeEEeeeehhhccccHHH
Q psy1420 111 RFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEE----LPIESDSYSAYTIAFGIRNVTRIDK 186 (241)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~----~~~~~~~~D~V~~~~~l~~~~~~~~ 186 (241)
+.+++++. ..++. +++++++|+.+ ++.+.++||+|++.---... ..
T Consensus 322 ~~A~~n~~-------------------------~~~~~--~v~f~~~d~~~~l~~~~~~~~~fD~Vv~dPPr~g~---~~ 371 (433)
T 1uwv_A 322 EKGQQNAR-------------------------LNGLQ--NVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGA---AG 371 (433)
T ss_dssp HHHHHHHH-------------------------HTTCC--SEEEEECCTTSCCSSSGGGTTCCSEEEECCCTTCC---HH
T ss_pred HHHHHHHH-------------------------HcCCC--ceEEEECCHHHHhhhhhhhcCCCCEEEECCCCccH---HH
Confidence 99999987 55554 68999999877 23445689999974322211 23
Q ss_pred HHHHHHHhccCCcEEEEEecCH--HHHHHHHHHCCCceEEEEEec
Q psy1420 187 ALSEAYRVLKPGGRFLCLEFSH--EEFKSMIESAGFQYVTYENLT 229 (241)
Q Consensus 187 ~l~~~~~~LkpgG~l~i~~~~~--~~~~~~l~~~Gf~~~~~~~~~ 229 (241)
.++.+.+ ++|++.++++.... ..-...+.+.||++.++....
T Consensus 372 ~~~~l~~-~~p~~ivyvsc~p~tlard~~~l~~~Gy~~~~~~~~d 415 (433)
T 1uwv_A 372 VMQQIIK-LEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLD 415 (433)
T ss_dssp HHHHHHH-HCCSEEEEEESCHHHHHHHHHHHHHTTCEEEEEEEEC
T ss_pred HHHHHHh-cCCCeEEEEECChHHHHhhHHHHHHCCcEEEEEEEec
Confidence 4444443 68888887753322 222355677899988876653
No 240
>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51
Probab=98.97 E-value=6e-10 Score=101.67 Aligned_cols=124 Identities=15% Similarity=0.103 Sum_probs=90.3
Q ss_pred CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCC
Q psy1420 42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP 121 (241)
Q Consensus 42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~ 121 (241)
+++.+|||+|||+|..+ ..++. ....+++++|+++.+++.+++++.
T Consensus 216 ~~~~~VLDl~~G~G~~~-------------~~la~------------------~g~~~v~~vD~s~~~l~~a~~n~~--- 261 (396)
T 2as0_A 216 QPGDRVLDVFTYTGGFA-------------IHAAI------------------AGADEVIGIDKSPRAIETAKENAK--- 261 (396)
T ss_dssp CTTCEEEETTCTTTHHH-------------HHHHH------------------TTCSEEEEEESCHHHHHHHHHHHH---
T ss_pred hCCCeEEEecCCCCHHH-------------HHHHH------------------CCCCEEEEEeCCHHHHHHHHHHHH---
Confidence 36789999999999988 44443 113479999999999999999988
Q ss_pred CccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCC----CCCceeEEeeeeh---------hhccccHHHHH
Q psy1420 122 IESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPI----ESDSYSAYTIAFG---------IRNVTRIDKAL 188 (241)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~----~~~~~D~V~~~~~---------l~~~~~~~~~l 188 (241)
..++. ++++++++|+.+... +..+||+|++.-. .+...+...++
T Consensus 262 ----------------------~n~~~-~~v~~~~~d~~~~~~~~~~~~~~fD~Vi~dpP~~~~~~~~~~~~~~~~~~~l 318 (396)
T 2as0_A 262 ----------------------LNGVE-DRMKFIVGSAFEEMEKLQKKGEKFDIVVLDPPAFVQHEKDLKAGLRAYFNVN 318 (396)
T ss_dssp ----------------------HTTCG-GGEEEEESCHHHHHHHHHHTTCCEEEEEECCCCSCSSGGGHHHHHHHHHHHH
T ss_pred ----------------------HcCCC-ccceEEECCHHHHHHHHHhhCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHH
Confidence 55554 368899999876421 2468999998421 12235567899
Q ss_pred HHHHHhccCCcEEEEEecCH----HH----HHHHHHHCCCce
Q psy1420 189 SEAYRVLKPGGRFLCLEFSH----EE----FKSMIESAGFQY 222 (241)
Q Consensus 189 ~~~~~~LkpgG~l~i~~~~~----~~----~~~~l~~~Gf~~ 222 (241)
..+.++|+|||.+++.+.+. +. +.+.+..+|...
T Consensus 319 ~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 360 (396)
T 2as0_A 319 FAGLNLVKDGGILVTCSCSQHVDLQMFKDMIIAAGAKAGKFL 360 (396)
T ss_dssp HHHHTTEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHTTEEE
T ss_pred HHHHHhcCCCcEEEEEECCCCCCHHHHHHHHHHHHHHcCCeE
Confidence 99999999999998887654 33 344555666543
No 241
>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}
Probab=98.96 E-value=9.1e-10 Score=89.56 Aligned_cols=124 Identities=16% Similarity=0.203 Sum_probs=76.8
Q ss_pred CCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcC
Q psy1420 41 PTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEEL 120 (241)
Q Consensus 41 ~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~ 120 (241)
.+++.+|||+|||+|.++ ..++..++.- ..... .....++++|+++.+ .
T Consensus 20 ~~~~~~vLDlGcG~G~~~-------------~~la~~~~~~-~~~~~-------~~~~~v~~vD~s~~~--------~-- 68 (196)
T 2nyu_A 20 LRPGLRVLDCGAAPGAWS-------------QVAVQKVNAA-GTDPS-------SPVGFVLGVDLLHIF--------P-- 68 (196)
T ss_dssp CCTTCEEEEETCCSCHHH-------------HHHHHHTTTT-CCCTT-------SCCCEEEEECSSCCC--------C--
T ss_pred CCCCCEEEEeCCCCCHHH-------------HHHHHHhccc-ccccc-------CCCceEEEEechhcc--------c--
Confidence 467889999999999988 4444311100 00000 012679999998831 0
Q ss_pred CCccccccccceecceeeeeeccccCCCCCCeeEE-ecccCCCC--------CCCCceeEEeeeehhhc----cccH---
Q psy1420 121 PIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFL-EANAEELP--------IESDSYSAYTIAFGIRN----VTRI--- 184 (241)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~~~~~--------~~~~~~D~V~~~~~l~~----~~~~--- 184 (241)
. .+++++ .+|+...+ .+.++||+|++...++. ..+.
T Consensus 69 --------------------------~--~~~~~~~~~d~~~~~~~~~~~~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~ 120 (196)
T 2nyu_A 69 --------------------------L--EGATFLCPADVTDPRTSQRILEVLPGRRADVILSDMAPNATGFRDLDHDRL 120 (196)
T ss_dssp --------------------------C--TTCEEECSCCTTSHHHHHHHHHHSGGGCEEEEEECCCCCCCSCHHHHHHHH
T ss_pred --------------------------C--CCCeEEEeccCCCHHHHHHHHHhcCCCCCcEEEeCCCCCCCCCcccCHHHH
Confidence 0 135666 67765432 23458999998654432 2232
Q ss_pred ----HHHHHHHHHhccCCcEEEEEecCH---HHHHHHHHHCCCceEE
Q psy1420 185 ----DKALSEAYRVLKPGGRFLCLEFSH---EEFKSMIESAGFQYVT 224 (241)
Q Consensus 185 ----~~~l~~~~~~LkpgG~l~i~~~~~---~~~~~~l~~~Gf~~~~ 224 (241)
..+++++.++|||||++++..+.. .++.+.++.. |..++
T Consensus 121 ~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~-f~~v~ 166 (196)
T 2nyu_A 121 ISLCLTLLSVTPDILQPGGTFLCKTWAGSQSRRLQRRLTEE-FQNVR 166 (196)
T ss_dssp HHHHHHHHHHHHHHEEEEEEEEEEECCSGGGHHHHHHHHHH-EEEEE
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEEecCCccHHHHHHHHHHH-hcceE
Confidence 488999999999999999987765 4455555543 54443
No 242
>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*
Probab=98.96 E-value=3.5e-09 Score=92.49 Aligned_cols=141 Identities=11% Similarity=0.083 Sum_probs=91.5
Q ss_pred CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCC
Q psy1420 42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP 121 (241)
Q Consensus 42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~ 121 (241)
.++.+|||+|||+|..+ ..++. ....+++++|+++.+++.+++++. +
T Consensus 74 ~~~~~VLdiG~G~G~~~-------------~~l~~------------------~~~~~v~~vDid~~~i~~ar~~~~-~- 120 (281)
T 1mjf_A 74 PKPKRVLVIGGGDGGTV-------------REVLQ------------------HDVDEVIMVEIDEDVIMVSKDLIK-I- 120 (281)
T ss_dssp SCCCEEEEEECTTSHHH-------------HHHTT------------------SCCSEEEEEESCHHHHHHHHHHTC-T-
T ss_pred CCCCeEEEEcCCcCHHH-------------HHHHh------------------CCCCEEEEEECCHHHHHHHHHHHh-h-
Confidence 34569999999999988 44443 124589999999999999998762 1
Q ss_pred CccccccccceecceeeeeeccccCC-------CCCCeeEEecccCCC-CCCCCceeEEeeeehhhccc--c--HHHHHH
Q psy1420 122 IESDSYSAYTIAFGIRNVTRIDKIDI-------PNPRLRFLEANAEEL-PIESDSYSAYTIAFGIRNVT--R--IDKALS 189 (241)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~d~~~~-~~~~~~~D~V~~~~~l~~~~--~--~~~~l~ 189 (241)
..++ ..++++++.+|+... +. .++||+|++....+..+ . ...+++
T Consensus 121 ----------------------~~~l~~~~~~~~~~~v~~~~~D~~~~l~~-~~~fD~Ii~d~~~~~~~~~~l~~~~~l~ 177 (281)
T 1mjf_A 121 ----------------------DNGLLEAMLNGKHEKAKLTIGDGFEFIKN-NRGFDVIIADSTDPVGPAKVLFSEEFYR 177 (281)
T ss_dssp ----------------------TTTHHHHHHTTCCSSEEEEESCHHHHHHH-CCCEEEEEEECCCCC-----TTSHHHHH
T ss_pred ----------------------ccccccccccCCCCcEEEEECchHHHhcc-cCCeeEEEECCCCCCCcchhhhHHHHHH
Confidence 0011 124789999987642 22 56899999865432211 1 267899
Q ss_pred HHHHhccCCcEEEEEecC----H---HHHHHHHHHCCCceEEEEEec----CceeEEEeee
Q psy1420 190 EAYRVLKPGGRFLCLEFS----H---EEFKSMIESAGFQYVTYENLT----FGVVAIHSGF 239 (241)
Q Consensus 190 ~~~~~LkpgG~l~i~~~~----~---~~~~~~l~~~Gf~~~~~~~~~----~~~~~~~~~~ 239 (241)
.+.++|+|||++++...+ . ..+.+.+++. |..+...... .|..+...+.
T Consensus 178 ~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~-f~~v~~~~~~vP~~~g~~~~~~as 237 (281)
T 1mjf_A 178 YVYDALNNPGIYVTQAGSVYLFTDELISAYKEMKKV-FDRVYYYSFPVIGYASPWAFLVGV 237 (281)
T ss_dssp HHHHHEEEEEEEEEEEEETTTSHHHHHHHHHHHHHH-CSEEEEEEECCTTSSSSEEEEEEE
T ss_pred HHHHhcCCCcEEEEEcCCcccCHHHHHHHHHHHHHH-CCceEEEEEecCCCCceEEEEEee
Confidence 999999999999886422 2 3444445444 7666654432 2444444444
No 243
>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}
Probab=98.93 E-value=6.8e-09 Score=92.63 Aligned_cols=126 Identities=13% Similarity=0.121 Sum_probs=86.8
Q ss_pred CCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCCc
Q psy1420 44 DTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIE 123 (241)
Q Consensus 44 ~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~ 123 (241)
..+|||+|||+|..+ ..++. . . +..+++++|+++.+++.+++.+.
T Consensus 90 ~~rVLdIG~G~G~la-------------~~la~----~---~----------p~~~v~~VEidp~vi~~Ar~~~~----- 134 (317)
T 3gjy_A 90 KLRITHLGGGACTMA-------------RYFAD----V---Y----------PQSRNTVVELDAELARLSREWFD----- 134 (317)
T ss_dssp GCEEEEESCGGGHHH-------------HHHHH----H---S----------TTCEEEEEESCHHHHHHHHHHSC-----
T ss_pred CCEEEEEECCcCHHH-------------HHHHH----H---C----------CCcEEEEEECCHHHHHHHHHhcc-----
Confidence 359999999999988 33332 0 1 24579999999999999998765
Q ss_pred cccccccceecceeeeeeccccCCCCCCeeEEecccCCC--CCCCCceeEEeeeehhhcc-c-c--HHHHHHHHHHhccC
Q psy1420 124 SDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL--PIESDSYSAYTIAFGIRNV-T-R--IDKALSEAYRVLKP 197 (241)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~D~V~~~~~l~~~-~-~--~~~~l~~~~~~Lkp 197 (241)
.. ..++++++.+|+... ..+.++||+|++....+.. + . ...+++.++++|+|
T Consensus 135 --------------------~~--~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~~~~~~~~~L~t~efl~~~~r~Lkp 192 (317)
T 3gjy_A 135 --------------------IP--RAPRVKIRVDDARMVAESFTPASRDVIIRDVFAGAITPQNFTTVEFFEHCHRGLAP 192 (317)
T ss_dssp --------------------CC--CTTTEEEEESCHHHHHHTCCTTCEEEEEECCSTTSCCCGGGSBHHHHHHHHHHEEE
T ss_pred --------------------cc--CCCceEEEECcHHHHHhhccCCCCCEEEECCCCccccchhhhHHHHHHHHHHhcCC
Confidence 11 124799999997754 2345789999986433321 1 1 26899999999999
Q ss_pred CcEEEEEecCH------HHHHHHHHHCCCceEEEEE
Q psy1420 198 GGRFLCLEFSH------EEFKSMIESAGFQYVTYEN 227 (241)
Q Consensus 198 gG~l~i~~~~~------~~~~~~l~~~Gf~~~~~~~ 227 (241)
||++++...+. ..+...+++. |..+....
T Consensus 193 gGvlv~~~~~~~~~~~~~~~~~tL~~v-F~~v~~~~ 227 (317)
T 3gjy_A 193 GGLYVANCGDHSDLRGAKSELAGMMEV-FEHVAVIA 227 (317)
T ss_dssp EEEEEEEEEECTTCHHHHHHHHHHHHH-CSEEEEEE
T ss_pred CcEEEEEecCCcchHHHHHHHHHHHHH-CCceEEEE
Confidence 99998865432 2344455554 66555543
No 244
>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}
Probab=98.89 E-value=9.9e-09 Score=90.47 Aligned_cols=89 Identities=16% Similarity=0.161 Sum_probs=65.8
Q ss_pred HHHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHh
Q psy1420 30 LWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPR 109 (241)
Q Consensus 30 ~~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~ 109 (241)
.+.+.+.+.+...++.+|||+|||+|..+ ..++. ....++++|+++.+
T Consensus 29 ~i~~~i~~~~~~~~~~~VLDiG~G~G~lt-------------~~La~-------------------~~~~v~~vDi~~~~ 76 (299)
T 2h1r_A 29 GILDKIIYAAKIKSSDIVLEIGCGTGNLT-------------VKLLP-------------------LAKKVITIDIDSRM 76 (299)
T ss_dssp HHHHHHHHHHCCCTTCEEEEECCTTSTTH-------------HHHTT-------------------TSSEEEEECSCHHH
T ss_pred HHHHHHHHhcCCCCcCEEEEEcCcCcHHH-------------HHHHh-------------------cCCEEEEEECCHHH
Confidence 34566777777788889999999999999 44444 34689999999999
Q ss_pred HHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhh
Q psy1420 110 LRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIR 179 (241)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~ 179 (241)
++.+++++. ..+. ++++++++|+...+. .+||+|+++...+
T Consensus 77 ~~~a~~~~~-------------------------~~~~--~~v~~~~~D~~~~~~--~~~D~Vv~n~py~ 117 (299)
T 2h1r_A 77 ISEVKKRCL-------------------------YEGY--NNLEVYEGDAIKTVF--PKFDVCTANIPYK 117 (299)
T ss_dssp HHHHHHHHH-------------------------HTTC--CCEEC----CCSSCC--CCCSEEEEECCGG
T ss_pred HHHHHHHHH-------------------------HcCC--CceEEEECchhhCCc--ccCCEEEEcCCcc
Confidence 999998876 3343 368899999988765 3799999876554
No 245
>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*
Probab=98.89 E-value=3.3e-09 Score=93.98 Aligned_cols=56 Identities=11% Similarity=0.132 Sum_probs=41.2
Q ss_pred CeeEEec-ccCCCCCCCCceeEEeeeehhh---ccccHH---HHHHHHHHhccCCcEEEEEecCH
Q psy1420 151 RLRFLEA-NAEELPIESDSYSAYTIAFGIR---NVTRID---KALSEAYRVLKPGGRFLCLEFSH 208 (241)
Q Consensus 151 ~~~~~~~-d~~~~~~~~~~~D~V~~~~~l~---~~~~~~---~~l~~~~~~LkpgG~l~i~~~~~ 208 (241)
++.++++ |+..++ ..+||+|+|....+ +..+.. .+|..+.++|||||.|++..+..
T Consensus 132 ~v~~~~~~D~~~l~--~~~fD~V~sd~~~~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~kv~~~ 194 (305)
T 2p41_A 132 LVRLQSGVDVFFIP--PERCDTLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLNP 194 (305)
T ss_dssp GEEEECSCCTTTSC--CCCCSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESCC
T ss_pred CeEEEeccccccCC--cCCCCEEEECCccccCcchhhHHHHHHHHHHHHHHhCCCCEEEEEeCCC
Confidence 5788888 877664 46899999976543 222222 58899999999999999876655
No 246
>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*
Probab=98.88 E-value=2.6e-08 Score=86.67 Aligned_cols=125 Identities=14% Similarity=0.150 Sum_probs=94.9
Q ss_pred CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCC
Q psy1420 42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP 121 (241)
Q Consensus 42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~ 121 (241)
.+..+|||+|||+|.++ ..+.. . .+...|.++|+++.+++.++.++.
T Consensus 131 ~~p~~VLDLGCG~GpLA-------------l~~~~-------~----------~p~a~y~a~DId~~~le~a~~~l~--- 177 (281)
T 3lcv_B 131 PRPNTLRDLACGLNPLA-------------APWMG-------L----------PAETVYIASDIDARLVGFVDEALT--- 177 (281)
T ss_dssp CCCSEEEETTCTTGGGC-------------CTTTT-------C----------CTTCEEEEEESBHHHHHHHHHHHH---
T ss_pred CCCceeeeeccCccHHH-------------HHHHh-------h----------CCCCEEEEEeCCHHHHHHHHHHHH---
Confidence 34669999999999988 33322 1 246789999999999999999988
Q ss_pred CccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHH--HHHHHHHHhccCCc
Q psy1420 122 IESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRID--KALSEAYRVLKPGG 199 (241)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~--~~l~~~~~~LkpgG 199 (241)
..++. .++...|....+ +.+++|++++.-.++++++.. ..+ ++...|+|+|
T Consensus 178 ----------------------~~g~~---~~~~v~D~~~~~-p~~~~DvaL~lkti~~Le~q~kg~g~-~ll~aL~~~~ 230 (281)
T 3lcv_B 178 ----------------------RLNVP---HRTNVADLLEDR-LDEPADVTLLLKTLPCLETQQRGSGW-EVIDIVNSPN 230 (281)
T ss_dssp ----------------------HTTCC---EEEEECCTTTSC-CCSCCSEEEETTCHHHHHHHSTTHHH-HHHHHSSCSE
T ss_pred ----------------------hcCCC---ceEEEeeecccC-CCCCcchHHHHHHHHHhhhhhhHHHH-HHHHHhCCCC
Confidence 55544 677788877655 357899999999999887653 445 8999999999
Q ss_pred EEEEEecCH-------------HHHHHHHHHCCCceEEEE
Q psy1420 200 RFLCLEFSH-------------EEFKSMIESAGFQYVTYE 226 (241)
Q Consensus 200 ~l~i~~~~~-------------~~~~~~l~~~Gf~~~~~~ 226 (241)
.++-..... +.|++.+.+.|..+.+.+
T Consensus 231 vvVSfp~ksl~Grs~gm~~~Y~~~~e~~~~~~g~~~~~~~ 270 (281)
T 3lcv_B 231 IVVTFPTKSLGQRSKGMFQNYSQSFESQARERSCRIQRLE 270 (281)
T ss_dssp EEEEEECC-------CHHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred EEEeccchhhcCCCcchhhHHHHHHHHHHHhcCCceeeee
Confidence 988655411 888888999998544333
No 247
>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}
Probab=98.77 E-value=4.2e-08 Score=89.87 Aligned_cols=154 Identities=14% Similarity=0.105 Sum_probs=97.4
Q ss_pred HHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcC--------CCc-----chhhh-----
Q psy1420 32 KDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQ--------WKP-----YQYLV----- 93 (241)
Q Consensus 32 ~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~-----~~~~~----- 93 (241)
...++....+.++..|||++||+|.++ +..+....+...+. |.. |+-+.
T Consensus 190 Aa~ll~l~~~~~~~~vlDp~CGSGt~~-------------ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~ 256 (393)
T 3k0b_A 190 AAALVLLTSWHPDRPFYDPVCGSGTIP-------------IEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAED 256 (393)
T ss_dssp HHHHHHHSCCCTTSCEEETTCTTSHHH-------------HHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCeEEEcCCCCCHHH-------------HHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHH
Confidence 456677778888899999999999987 33332111100000 000 00000
Q ss_pred ---cccCCCceeecCChHhHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCcee
Q psy1420 94 ---ESIRQFPNQIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYS 170 (241)
Q Consensus 94 ---~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D 170 (241)
......++++|+++.+++.++.++. ..++. .++++.+.|+...+.+ ++||
T Consensus 257 ~~~~~~~~~V~GvDid~~al~~Ar~Na~-------------------------~~gl~-~~I~~~~~D~~~~~~~-~~fD 309 (393)
T 3k0b_A 257 LANYDQPLNIIGGDIDARLIEIAKQNAV-------------------------EAGLG-DLITFRQLQVADFQTE-DEYG 309 (393)
T ss_dssp HCCTTCCCCEEEEESCHHHHHHHHHHHH-------------------------HTTCT-TCSEEEECCGGGCCCC-CCSC
T ss_pred hhcccCCceEEEEECCHHHHHHHHHHHH-------------------------HcCCC-CceEEEECChHhCCCC-CCCC
Confidence 0022569999999999999999998 66665 4689999999988754 5899
Q ss_pred EEeee--ehhhcc--ccHHHHHHHHHHhccC--CcEEEEEecCHHHHHHHHHHCCCceEEEEEec
Q psy1420 171 AYTIA--FGIRNV--TRIDKALSEAYRVLKP--GGRFLCLEFSHEEFKSMIESAGFQYVTYENLT 229 (241)
Q Consensus 171 ~V~~~--~~l~~~--~~~~~~l~~~~~~Lkp--gG~l~i~~~~~~~~~~~l~~~Gf~~~~~~~~~ 229 (241)
+|+++ ++.+.. .+...+...+.+.||+ ||.+++.+...+ +.+..|.+..+...+.
T Consensus 310 ~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit~~~~----l~~~~g~~~~~~~~l~ 370 (393)
T 3k0b_A 310 VVVANPPYGERLEDEEAVRQLYREMGIVYKRMPTWSVYVLTSYEL----FEEVYGKKATKKRKLY 370 (393)
T ss_dssp EEEECCCCCCSHHHHHHHHHHHHHHHHHHHTCTTCEEEEEECCTT----HHHHHTSCCSEEEEEC
T ss_pred EEEECCCCccccCCchhHHHHHHHHHHHHhcCCCCEEEEEECCHH----HHHHhCCCcccceEEe
Confidence 99998 444322 2334455555556655 898888765443 2334466655555554
No 248
>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45
Probab=98.75 E-value=2.7e-08 Score=92.22 Aligned_cols=134 Identities=14% Similarity=0.032 Sum_probs=87.6
Q ss_pred HHHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHh
Q psy1420 30 LWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPR 109 (241)
Q Consensus 30 ~~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~ 109 (241)
...+.+.+.+.+.++.+|+|+|||+|.+. ..+... +......-.-........++|+|+++.+
T Consensus 158 ~v~~~mv~~l~~~~~~~VlDpacGsG~fl-------------~~~~~~----l~~~~~~~~~~~~~~~~~i~G~Ei~~~~ 220 (445)
T 2okc_A 158 PLIQAMVDCINPQMGETVCDPACGTGGFL-------------LTAYDY----MKGQSASKEKRDFLRDKALHGVDNTPLV 220 (445)
T ss_dssp HHHHHHHHHHCCCTTCCEEETTCTTCHHH-------------HHHHHH----HHTCC-CCHHHHHHHHTTEEEEESCHHH
T ss_pred HHHHHHHHHhCCCCCCEEeccCCCcchHH-------------HHHHHH----HHHhcCCHHHHHhhcCeEEEEEeCCHHH
Confidence 34566777777788889999999999987 333331 1110000000000023579999999999
Q ss_pred HHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhcccc------
Q psy1420 110 LRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTR------ 183 (241)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~------ 183 (241)
++.|+.++. ..++...+..+.++|....+.. .+||+|+++-.+.....
T Consensus 221 ~~lA~~nl~-------------------------l~g~~~~~~~i~~gD~l~~~~~-~~fD~Iv~NPPf~~~~~~~~~~~ 274 (445)
T 2okc_A 221 VTLASMNLY-------------------------LHGIGTDRSPIVCEDSLEKEPS-TLVDVILANPPFGTRPAGSVDIN 274 (445)
T ss_dssp HHHHHHHHH-------------------------HTTCCSSCCSEEECCTTTSCCS-SCEEEEEECCCSSCCCTTCCCCC
T ss_pred HHHHHHHHH-------------------------HhCCCcCCCCEeeCCCCCCccc-CCcCEEEECCCCCCcccccchhh
Confidence 999998876 3343211466788888776543 48999998744432111
Q ss_pred -----------HHHHHHHHHHhccCCcEEEEEec
Q psy1420 184 -----------IDKALSEAYRVLKPGGRFLCLEF 206 (241)
Q Consensus 184 -----------~~~~l~~~~~~LkpgG~l~i~~~ 206 (241)
...++..+.++|||||++.++..
T Consensus 275 ~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V~p 308 (445)
T 2okc_A 275 RPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLP 308 (445)
T ss_dssp CTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred HhhcCCCCcchHHHHHHHHHHHhccCCEEEEEEC
Confidence 14789999999999999987763
No 249
>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*
Probab=98.75 E-value=2.2e-07 Score=79.92 Aligned_cols=102 Identities=16% Similarity=0.061 Sum_probs=79.1
Q ss_pred CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCC
Q psy1420 42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP 121 (241)
Q Consensus 42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~ 121 (241)
.++.+|||+|||+|.++ ..+.+ ...++++|+++.+++.+++.+.
T Consensus 104 ~~p~~VLDlGCG~gpLa-------------l~~~~--------------------~~~y~a~DId~~~i~~ar~~~~--- 147 (253)
T 3frh_A 104 ETPRRVLDIACGLNPLA-------------LYERG--------------------IASVWGCDIHQGLGDVITPFAR--- 147 (253)
T ss_dssp CCCSEEEEETCTTTHHH-------------HHHTT--------------------CSEEEEEESBHHHHHHHHHHHH---
T ss_pred CCCCeEEEecCCccHHH-------------HHhcc--------------------CCeEEEEeCCHHHHHHHHHHHH---
Confidence 45779999999999888 22222 5689999999999999999987
Q ss_pred CccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccH-HHHHHHHHHhccCCcE
Q psy1420 122 IESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRI-DKALSEAYRVLKPGGR 200 (241)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~-~~~l~~~~~~LkpgG~ 200 (241)
..+. +.++...|....+.+ +++|+|++.-.+|++++. ....-++...|+++|.
T Consensus 148 ----------------------~~g~---~~~~~v~D~~~~~~~-~~~DvvLllk~lh~LE~q~~~~~~~ll~aL~~~~v 201 (253)
T 3frh_A 148 ----------------------EKDW---DFTFALQDVLCAPPA-EAGDLALIFKLLPLLEREQAGSAMALLQSLNTPRM 201 (253)
T ss_dssp ----------------------HTTC---EEEEEECCTTTSCCC-CBCSEEEEESCHHHHHHHSTTHHHHHHHHCBCSEE
T ss_pred ----------------------hcCC---CceEEEeecccCCCC-CCcchHHHHHHHHHhhhhchhhHHHHHHHhcCCCE
Confidence 4442 478888998887754 589999999888887654 2333378889999988
Q ss_pred EEEEe
Q psy1420 201 FLCLE 205 (241)
Q Consensus 201 l~i~~ 205 (241)
++-..
T Consensus 202 vVsfP 206 (253)
T 3frh_A 202 AVSFP 206 (253)
T ss_dssp EEEEE
T ss_pred EEEcC
Confidence 87554
No 250
>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24
Probab=98.73 E-value=5e-10 Score=95.57 Aligned_cols=111 Identities=12% Similarity=0.123 Sum_probs=78.7
Q ss_pred HHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhH
Q psy1420 31 WKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRL 110 (241)
Q Consensus 31 ~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~ 110 (241)
..+.+.+.+...++.+|||+|||+|..+ ..++. ...+++++|+++.++
T Consensus 17 ~~~~i~~~~~~~~~~~VLDiG~G~G~~~-------------~~l~~-------------------~~~~v~~id~~~~~~ 64 (245)
T 1yub_A 17 VLNQIIKQLNLKETDTVYEIGTGKGHLT-------------TKLAK-------------------ISKQVTSIELDSHLF 64 (245)
T ss_dssp THHHHHHHCCCCSSEEEEECSCCCSSCS-------------HHHHH-------------------HSSEEEESSSSCSSS
T ss_pred HHHHHHHhcCCCCCCEEEEEeCCCCHHH-------------HHHHH-------------------hCCeEEEEECCHHHH
Confidence 4566777777788889999999999998 44444 346799999999998
Q ss_pred HHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCC-CceeEEeeeehh-----------
Q psy1420 111 RFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIES-DSYSAYTIAFGI----------- 178 (241)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~~D~V~~~~~l----------- 178 (241)
+.++++.. . .++++++++|+...+++. ++| .|+++...
T Consensus 65 ~~a~~~~~---------------------------~--~~~v~~~~~D~~~~~~~~~~~f-~vv~n~Py~~~~~~~~~~~ 114 (245)
T 1yub_A 65 NLSSEKLK---------------------------L--NTRVTLIHQDILQFQFPNKQRY-KIVGNIPYHLSTQIIKKVV 114 (245)
T ss_dssp SSSSCTTT---------------------------T--CSEEEECCSCCTTTTCCCSSEE-EEEEECCSSSCHHHHHHHH
T ss_pred HHHHHHhc---------------------------c--CCceEEEECChhhcCcccCCCc-EEEEeCCccccHHHHHHHH
Confidence 87765543 1 136889999999887653 578 56654221
Q ss_pred hccccHHHHH----HHHHHhccCCcEEEE
Q psy1420 179 RNVTRIDKAL----SEAYRVLKPGGRFLC 203 (241)
Q Consensus 179 ~~~~~~~~~l----~~~~~~LkpgG~l~i 203 (241)
.+.......+ +.+.|+|+|||.+.+
T Consensus 115 ~~~~~~~~~lm~q~e~a~rll~~~G~l~v 143 (245)
T 1yub_A 115 FESRASDIYLIVEEGFYKRTLDIHRTLGL 143 (245)
T ss_dssp HHCCCEEEEEEEESSHHHHHHCGGGSHHH
T ss_pred hCCCCCeEEEEeeHHHHHHHhCCCCchhh
Confidence 1122233344 668899999998765
No 251
>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A
Probab=98.73 E-value=5e-08 Score=83.36 Aligned_cols=86 Identities=10% Similarity=0.204 Sum_probs=65.3
Q ss_pred HHHHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChH
Q psy1420 29 RLWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNP 108 (241)
Q Consensus 29 ~~~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~ 108 (241)
..+.+.+.+.+...++.+|||+|||+|..+ ..++. ...+++++|+++.
T Consensus 16 ~~~~~~i~~~~~~~~~~~VLDiG~G~G~lt-------------~~l~~-------------------~~~~v~~vD~~~~ 63 (244)
T 1qam_A 16 KHNIDKIMTNIRLNEHDNIFEIGSGKGHFT-------------LELVQ-------------------RCNFVTAIEIDHK 63 (244)
T ss_dssp HHHHHHHHTTCCCCTTCEEEEECCTTSHHH-------------HHHHH-------------------HSSEEEEECSCHH
T ss_pred HHHHHHHHHhCCCCCCCEEEEEeCCchHHH-------------HHHHH-------------------cCCeEEEEECCHH
Confidence 345677777878788889999999999998 54444 3468999999999
Q ss_pred hHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCC-CceeEEeeee
Q psy1420 109 RLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIES-DSYSAYTIAF 176 (241)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~~D~V~~~~ 176 (241)
+++.++++.. . . ++++++++|+...+++. ..+ .|+++.
T Consensus 64 ~~~~a~~~~~-------------------------~--~--~~v~~~~~D~~~~~~~~~~~~-~vv~nl 102 (244)
T 1qam_A 64 LCKTTENKLV-------------------------D--H--DNFQVLNKDILQFKFPKNQSY-KIFGNI 102 (244)
T ss_dssp HHHHHHHHTT-------------------------T--C--CSEEEECCCGGGCCCCSSCCC-EEEEEC
T ss_pred HHHHHHHhhc-------------------------c--C--CCeEEEEChHHhCCcccCCCe-EEEEeC
Confidence 9999988765 2 1 36899999999887653 345 355443
No 252
>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}
Probab=98.72 E-value=3.6e-08 Score=89.23 Aligned_cols=131 Identities=11% Similarity=0.123 Sum_probs=90.3
Q ss_pred HHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhH
Q psy1420 31 WKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRL 110 (241)
Q Consensus 31 ~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~ 110 (241)
..+.+.+.+... +.+|||++||+|.++ ..++. ...+++++|+++.++
T Consensus 202 l~~~~~~~~~~~-~~~vLDl~cG~G~~~-------------l~la~-------------------~~~~V~gvd~~~~ai 248 (369)
T 3bt7_A 202 MLEWALDVTKGS-KGDLLELYCGNGNFS-------------LALAR-------------------NFDRVLATEIAKPSV 248 (369)
T ss_dssp HHHHHHHHTTTC-CSEEEEESCTTSHHH-------------HHHGG-------------------GSSEEEEECCCHHHH
T ss_pred HHHHHHHHhhcC-CCEEEEccCCCCHHH-------------HHHHh-------------------cCCEEEEEECCHHHH
Confidence 345555655543 568999999999998 43333 345799999999999
Q ss_pred HHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCC--CCC--------------CceeEEee
Q psy1420 111 RFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELP--IES--------------DSYSAYTI 174 (241)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~--------------~~~D~V~~ 174 (241)
+.+++++. ..++. +++++.+|+.+.. ... .+||+|++
T Consensus 249 ~~a~~n~~-------------------------~ng~~--~v~~~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~fD~Vv~ 301 (369)
T 3bt7_A 249 AAAQYNIA-------------------------ANHID--NVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFV 301 (369)
T ss_dssp HHHHHHHH-------------------------HTTCC--SEEEECCCSHHHHHHHSSCCCCTTGGGSCGGGCCEEEEEE
T ss_pred HHHHHHHH-------------------------HcCCC--ceEEEECCHHHHHHHHhhccccccccccccccCCCCEEEE
Confidence 99999988 55554 6888988876541 111 37999986
Q ss_pred eehhhccccHHHHHHHHHHhccCCcEEEEEecCH----HHHHHHHHHCCCceEEEEEec
Q psy1420 175 AFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH----EEFKSMIESAGFQYVTYENLT 229 (241)
Q Consensus 175 ~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~----~~~~~~l~~~Gf~~~~~~~~~ 229 (241)
.--- ..+..++.+.|+|+|+++.++..+ +++..+. + ||++.+...+.
T Consensus 302 dPPr------~g~~~~~~~~l~~~g~ivyvsc~p~t~ard~~~l~-~-~y~~~~~~~~D 352 (369)
T 3bt7_A 302 DPPR------SGLDSETEKMVQAYPRILYISCNPETLCKNLETLS-Q-THKVERLALFD 352 (369)
T ss_dssp CCCT------TCCCHHHHHHHTTSSEEEEEESCHHHHHHHHHHHH-H-HEEEEEEEEEC
T ss_pred CcCc------cccHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHh-h-CcEEEEEEeec
Confidence 3211 123445667778999998888777 4444443 2 68887777664
No 253
>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}
Probab=98.71 E-value=1.2e-07 Score=86.71 Aligned_cols=154 Identities=12% Similarity=0.112 Sum_probs=99.3
Q ss_pred HHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcC--------CCc-----chhhh----
Q psy1420 31 WKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQ--------WKP-----YQYLV---- 93 (241)
Q Consensus 31 ~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~-----~~~~~---- 93 (241)
+...++....+.++..++|.+||+|.++ +..+....+...+. |.. |+-+.
T Consensus 182 LAaall~l~~~~~~~~llDp~CGSGt~l-------------IEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~ 248 (384)
T 3ldg_A 182 MAAAIILLSNWFPDKPFVDPTCGSGTFC-------------IEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEAD 248 (384)
T ss_dssp HHHHHHHHTTCCTTSCEEETTCTTSHHH-------------HHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCeEEEeCCcCCHHH-------------HHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHH
Confidence 3455677778888999999999999987 44332111100000 000 00000
Q ss_pred ----cccCCCceeecCChHhHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCce
Q psy1420 94 ----ESIRQFPNQIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSY 169 (241)
Q Consensus 94 ----~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 169 (241)
......++|+|+++.+++.+++++. ..++. +.+++.+.|+...+.+ ++|
T Consensus 249 ~~~~~~~~~~v~GvDid~~al~~Ar~Na~-------------------------~~gl~-~~I~~~~~D~~~l~~~-~~f 301 (384)
T 3ldg_A 249 EQADYDIQLDISGFDFDGRMVEIARKNAR-------------------------EVGLE-DVVKLKQMRLQDFKTN-KIN 301 (384)
T ss_dssp HHCCTTCCCCEEEEESCHHHHHHHHHHHH-------------------------HTTCT-TTEEEEECCGGGCCCC-CCS
T ss_pred HhhhccCCceEEEEECCHHHHHHHHHHHH-------------------------HcCCC-CceEEEECChHHCCcc-CCc
Confidence 0012569999999999999999998 66765 4699999999988754 589
Q ss_pred eEEeee--ehhhc--cccHHHHHHHHHHhccC--CcEEEEEecCHHHHHHHHHHCCCceEEEEEe
Q psy1420 170 SAYTIA--FGIRN--VTRIDKALSEAYRVLKP--GGRFLCLEFSHEEFKSMIESAGFQYVTYENL 228 (241)
Q Consensus 170 D~V~~~--~~l~~--~~~~~~~l~~~~~~Lkp--gG~l~i~~~~~~~~~~~l~~~Gf~~~~~~~~ 228 (241)
|+|+++ ++.+. ..+...+...+.+.||+ ||.+++.+...+ +.+..|.+..+...+
T Consensus 302 D~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit~~~~----l~~~~g~~~~~~~~l 362 (384)
T 3ldg_A 302 GVLISNPPYGERLLDDKAVDILYNEMGETFAPLKTWSQFILTNDTD----FEQKFGRKADKKRKL 362 (384)
T ss_dssp CEEEECCCCTTTTSCHHHHHHHHHHHHHHHTTCTTSEEEEEESCTT----HHHHHTSCCSEEEEE
T ss_pred CEEEECCchhhccCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCHH----HHHHhCCCccceeEE
Confidence 999998 54442 23445666666667766 999888776443 233446665555444
No 254
>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*
Probab=98.70 E-value=4.4e-08 Score=89.14 Aligned_cols=125 Identities=14% Similarity=0.120 Sum_probs=87.3
Q ss_pred HHHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHh
Q psy1420 30 LWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPR 109 (241)
Q Consensus 30 ~~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~ 109 (241)
...+.+.+.+...++.+|||+|||+|.++ ..++..++ ....++|+|+++.+
T Consensus 26 ~l~~~~~~~~~~~~~~~vLD~gcGtG~~~-------------~~~~~~~~----------------~~~~i~gvDi~~~~ 76 (421)
T 2ih2_A 26 EVVDFMVSLAEAPRGGRVLEPACAHGPFL-------------RAFREAHG----------------TAYRFVGVEIDPKA 76 (421)
T ss_dssp HHHHHHHHHCCCCTTCEEEEETCTTCHHH-------------HHHHHHHC----------------SCSEEEEEESCTTT
T ss_pred HHHHHHHHhhccCCCCEEEECCCCChHHH-------------HHHHHHhC----------------CCCeEEEEECCHHH
Confidence 34566777776656679999999999987 33332100 24579999999987
Q ss_pred HHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhh---c------
Q psy1420 110 LRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIR---N------ 180 (241)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~---~------ 180 (241)
++.+ . ++.+.++|+...+. .++||+|+++--.. .
T Consensus 77 ~~~a----~--------------------------------~~~~~~~D~~~~~~-~~~fD~Ii~NPPy~~~~~~~~~~~ 119 (421)
T 2ih2_A 77 LDLP----P--------------------------------WAEGILADFLLWEP-GEAFDLILGNPPYGIVGEASKYPI 119 (421)
T ss_dssp CCCC----T--------------------------------TEEEEESCGGGCCC-SSCEEEEEECCCCCCBSCTTTCSB
T ss_pred HHhC----C--------------------------------CCcEEeCChhhcCc-cCCCCEEEECcCccCccccccccc
Confidence 7554 1 46788888877643 46899999852111 0
Q ss_pred -ccc-------------------HHHHHHHHHHhccCCcEEEEEecCH-------HHHHHHHHHCCC
Q psy1420 181 -VTR-------------------IDKALSEAYRVLKPGGRFLCLEFSH-------EEFKSMIESAGF 220 (241)
Q Consensus 181 -~~~-------------------~~~~l~~~~~~LkpgG~l~i~~~~~-------~~~~~~l~~~Gf 220 (241)
..+ ...+++.+.++|+|||+++++.... +.+++.+.+.|+
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p~~~l~~~~~~~lr~~l~~~~~ 186 (421)
T 2ih2_A 120 HVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPATWLVLEDFALLREFLAREGK 186 (421)
T ss_dssp CCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEGGGGTCGGGHHHHHHHHHHSE
T ss_pred ccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEEChHHhcCccHHHHHHHHHhcCC
Confidence 111 1266899999999999988875432 788898888887
No 255
>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38
Probab=98.69 E-value=1.2e-07 Score=84.24 Aligned_cols=133 Identities=12% Similarity=0.143 Sum_probs=89.6
Q ss_pred HHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHH
Q psy1420 35 FIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLE 114 (241)
Q Consensus 35 ~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~ 114 (241)
....+.+.++.+|||+|||+|..+ ..++..++ ....++++|+++.+++.++
T Consensus 94 ~~~~l~~~~g~~VLDlcaG~G~kt-------------~~la~~~~----------------~~g~V~a~D~~~~~l~~~~ 144 (309)
T 2b9e_A 94 PAMLLDPPPGSHVIDACAAPGNKT-------------SHLAALLK----------------NQGKIFAFDLDAKRLASMA 144 (309)
T ss_dssp HHHHHCCCTTCEEEESSCTTCHHH-------------HHHHHHHT----------------TCSEEEEEESCHHHHHHHH
T ss_pred HHHHhCCCCCCEEEEeCCChhHHH-------------HHHHHHhC----------------CCCEEEEEeCCHHHHHHHH
Confidence 334556788999999999999988 44444211 2468999999999999999
Q ss_pred HHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCC---CceeEEeee-----eh-hhccc---
Q psy1420 115 ANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIES---DSYSAYTIA-----FG-IRNVT--- 182 (241)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~---~~~D~V~~~-----~~-l~~~~--- 182 (241)
+++. +.++. ++.++..|+..++... .+||.|++. .+ ++..+
T Consensus 145 ~n~~-------------------------r~g~~--~v~~~~~D~~~~~~~~~~~~~fD~Vl~D~PcSg~G~~~r~pd~~ 197 (309)
T 2b9e_A 145 TLLA-------------------------RAGVS--CCELAEEDFLAVSPSDPRYHEVHYILLDPSCSGSGMPSRQLEEP 197 (309)
T ss_dssp HHHH-------------------------HTTCC--SEEEEECCGGGSCTTCGGGTTEEEEEECCCCCC-----------
T ss_pred HHHH-------------------------HcCCC--eEEEEeCChHhcCccccccCCCCEEEEcCCcCCCCCCccCCChh
Confidence 9998 55654 6889999988764321 479999962 22 22111
Q ss_pred --------cH-------HHHHHHHHHhccCCcEEEEEecCH------HHHHHHHHHC-C-CceEE
Q psy1420 183 --------RI-------DKALSEAYRVLKPGGRFLCLEFSH------EEFKSMIESA-G-FQYVT 224 (241)
Q Consensus 183 --------~~-------~~~l~~~~~~LkpgG~l~i~~~~~------~~~~~~l~~~-G-f~~~~ 224 (241)
+. .++|+.+.++++ ||+|+.++.+. +.+..++++. + |+.+.
T Consensus 198 ~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsTCs~~~~Ene~~v~~~l~~~~~~~~~~~ 261 (309)
T 2b9e_A 198 GAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYSTCSLCQEENEDVVRDALQQNPGAFRLAP 261 (309)
T ss_dssp -------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEESCCCGGGTHHHHHHHHTTSTTTEEECC
T ss_pred hhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEECCCCChHHhHHHHHHHHHhCCCcEEEec
Confidence 11 246777777776 99988765443 4556666655 3 65543
No 256
>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}
Probab=98.63 E-value=1.6e-07 Score=85.74 Aligned_cols=154 Identities=12% Similarity=0.098 Sum_probs=96.5
Q ss_pred HHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhc--------CCCcc-----hhhh----
Q psy1420 31 WKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAG--------QWKPY-----QYLV---- 93 (241)
Q Consensus 31 ~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~-----~~~~---- 93 (241)
....++....+.++.+|||++||+|.++ ..++....+...+ .|..+ +-+.
T Consensus 183 lAa~ll~~~~~~~~~~vlDp~CGSGt~l-------------ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~ 249 (385)
T 3ldu_A 183 LAAGLIYLTPWKAGRVLVDPMCGSGTIL-------------IEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAF 249 (385)
T ss_dssp HHHHHHHTSCCCTTSCEEETTCTTCHHH-------------HHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHhhCCCCCCeEEEcCCCCCHHH-------------HHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHH
Confidence 3456667778888999999999999987 4333211100000 00000 0000
Q ss_pred ----cccCCCceeecCChHhHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCce
Q psy1420 94 ----ESIRQFPNQIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSY 169 (241)
Q Consensus 94 ----~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 169 (241)
......++|+|+++.+++.++.++. ..++. +.+++.+.|+.+++.+ ++|
T Consensus 250 ~~~~~~~~~~V~GvDid~~ai~~Ar~Na~-------------------------~~gl~-~~i~~~~~D~~~l~~~-~~~ 302 (385)
T 3ldu_A 250 NKIDNESKFKIYGYDIDEESIDIARENAE-------------------------IAGVD-EYIEFNVGDATQFKSE-DEF 302 (385)
T ss_dssp HHSCCSCCCCEEEEESCHHHHHHHHHHHH-------------------------HHTCG-GGEEEEECCGGGCCCS-CBS
T ss_pred HHhhccCCceEEEEECCHHHHHHHHHHHH-------------------------HcCCC-CceEEEECChhhcCcC-CCC
Confidence 0022579999999999999999988 55654 4689999999988654 589
Q ss_pred eEEeeeehh--hc--cccHHHHHHHHHHhccC--CcEEEEEecCHHHHHHHHHHCCCceEEEEEe
Q psy1420 170 SAYTIAFGI--RN--VTRIDKALSEAYRVLKP--GGRFLCLEFSHEEFKSMIESAGFQYVTYENL 228 (241)
Q Consensus 170 D~V~~~~~l--~~--~~~~~~~l~~~~~~Lkp--gG~l~i~~~~~~~~~~~l~~~Gf~~~~~~~~ 228 (241)
|+|+++--. +. ..+...+.+.+.+.||+ |+.+++.+...+ +.+..|.+..+...+
T Consensus 303 D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit~~~~----l~~~~g~~~~~~~~l 363 (385)
T 3ldu_A 303 GFIITNPPYGERLEDKDSVKQLYKELGYAFRKLKNWSYYLITSYED----FEYEFGQKADKKRKL 363 (385)
T ss_dssp CEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTSBSCEEEEEESCTT----HHHHHTSCCSEEEEE
T ss_pred cEEEECCCCcCccCCHHHHHHHHHHHHHHHhhCCCCEEEEEECCHH----HHHhhCCCcccceEE
Confidence 999996432 21 23445666666667776 888888765432 233445554444444
No 257
>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*
Probab=98.63 E-value=3.5e-07 Score=84.51 Aligned_cols=123 Identities=13% Similarity=0.135 Sum_probs=83.7
Q ss_pred CCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcC
Q psy1420 41 PTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEEL 120 (241)
Q Consensus 41 ~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~ 120 (241)
..++.+|||+|||+|.++ ..++. ...+++++|+++.+++.+++++.
T Consensus 288 ~~~~~~VLDlgcG~G~~s-------------l~la~-------------------~~~~V~gvD~s~~ai~~A~~n~~-- 333 (425)
T 2jjq_A 288 LVEGEKILDMYSGVGTFG-------------IYLAK-------------------RGFNVKGFDSNEFAIEMARRNVE-- 333 (425)
T ss_dssp HCCSSEEEEETCTTTHHH-------------HHHHH-------------------TTCEEEEEESCHHHHHHHHHHHH--
T ss_pred cCCCCEEEEeeccchHHH-------------HHHHH-------------------cCCEEEEEECCHHHHHHHHHHHH--
Confidence 356779999999999998 44443 34579999999999999999887
Q ss_pred CCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHHHHHHhccCCcE
Q psy1420 121 PIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGR 200 (241)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~ 200 (241)
..++. +++..+|+.+... .+||+|++.-.-... ...+++.+. .|+|+|.
T Consensus 334 -----------------------~ngl~---v~~~~~d~~~~~~--~~fD~Vv~dPPr~g~--~~~~~~~l~-~l~p~gi 382 (425)
T 2jjq_A 334 -----------------------INNVD---AEFEVASDREVSV--KGFDTVIVDPPRAGL--HPRLVKRLN-REKPGVI 382 (425)
T ss_dssp -----------------------HHTCC---EEEEECCTTTCCC--TTCSEEEECCCTTCS--CHHHHHHHH-HHCCSEE
T ss_pred -----------------------HcCCc---EEEEECChHHcCc--cCCCEEEEcCCccch--HHHHHHHHH-hcCCCcE
Confidence 44443 7899999888642 279999975332111 124555554 5899999
Q ss_pred EEEEecCHHHHHHHHHHCCCceEEEEEec
Q psy1420 201 FLCLEFSHEEFKSMIESAGFQYVTYENLT 229 (241)
Q Consensus 201 l~i~~~~~~~~~~~l~~~Gf~~~~~~~~~ 229 (241)
++++. .+..+..-+....|++.+...+.
T Consensus 383 vyvsc-~p~tlarDl~~l~y~l~~~~~~D 410 (425)
T 2jjq_A 383 VYVSC-NPETFARDVKMLDYRIDEIVALD 410 (425)
T ss_dssp EEEES-CHHHHHHHHHHSSCCEEEEEEEC
T ss_pred EEEEC-ChHHHHhHHhhCeEEEEEEEEEC
Confidence 88854 44333322222227777766553
No 258
>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*
Probab=98.63 E-value=8.4e-08 Score=84.71 Aligned_cols=89 Identities=10% Similarity=0.110 Sum_probs=72.0
Q ss_pred HHHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHh
Q psy1420 30 LWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPR 109 (241)
Q Consensus 30 ~~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~ 109 (241)
.+.+.+.+.+...++.+|||+|||+|..+ ..++. ...+++++|+++.+
T Consensus 37 ~i~~~Iv~~l~~~~~~~VLEIG~G~G~lT-------------~~La~-------------------~~~~V~aVEid~~l 84 (295)
T 3gru_A 37 NFVNKAVESANLTKDDVVLEIGLGKGILT-------------EELAK-------------------NAKKVYVIEIDKSL 84 (295)
T ss_dssp HHHHHHHHHTTCCTTCEEEEECCTTSHHH-------------HHHHH-------------------HSSEEEEEESCGGG
T ss_pred HHHHHHHHhcCCCCcCEEEEECCCchHHH-------------HHHHh-------------------cCCEEEEEECCHHH
Confidence 45677778888888999999999999998 44444 35679999999999
Q ss_pred HHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhh
Q psy1420 110 LRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIR 179 (241)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~ 179 (241)
++.+++++. . . ++++++++|+...+++..+||+|+++...+
T Consensus 85 i~~a~~~~~-------------------------~--~--~~v~vi~gD~l~~~~~~~~fD~Iv~NlPy~ 125 (295)
T 3gru_A 85 EPYANKLKE-------------------------L--Y--NNIEIIWGDALKVDLNKLDFNKVVANLPYQ 125 (295)
T ss_dssp HHHHHHHHH-------------------------H--C--SSEEEEESCTTTSCGGGSCCSEEEEECCGG
T ss_pred HHHHHHHhc-------------------------c--C--CCeEEEECchhhCCcccCCccEEEEeCccc
Confidence 999998875 1 1 368999999999887777899999875544
No 259
>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}
Probab=98.61 E-value=2.9e-07 Score=83.86 Aligned_cols=133 Identities=10% Similarity=0.083 Sum_probs=76.0
Q ss_pred CCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhh-hcccCCCceeecCChHhHHHHHHHHhcCCC
Q psy1420 44 DTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYL-VESIRQFPNQIDIPNPRLRFLEANAEELPI 122 (241)
Q Consensus 44 ~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~ 122 (241)
..+|+|+|||+|.++ ..++..+.+.+..... -. .+.+..+++..|+..+.-....+.+...
T Consensus 53 ~~~IaDlGCssG~Nt-------------~~~v~~ii~~i~~~~~---~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~-- 114 (374)
T 3b5i_A 53 PFTAVDLGCSSGANT-------------VHIIDFIVKHISKRFD---AAGIDPPEFTAFFSDLPSNDFNTLFQLLPPL-- 114 (374)
T ss_dssp CEEEEEETCCSSHHH-------------HHHHHHHHHHHHHHHH---HTTCCCCCEEEEEEECTTSCHHHHHHHSCCB--
T ss_pred ceEEEecCCCCChhH-------------HHHHHHHHHHHHHHHh---hcCCCCCceeEEecCCCccchHHHHhhhhhh--
Confidence 578999999999999 2222222111111100 00 0014567888898888777766665411
Q ss_pred ccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccc--------------------
Q psy1420 123 ESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVT-------------------- 182 (241)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~-------------------- 182 (241)
.... ..+.... ..+..+.-+.-+.+.+..-.++++++|+|+++.++||+.
T Consensus 115 -~~~~-------~~~~~~~--~~~~~~~f~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~ 184 (374)
T 3b5i_A 115 -VSNT-------CMEECLA--ADGNRSYFVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVF 184 (374)
T ss_dssp -CCCC---------CCC-----CCCBCSEEEEEESCTTSCCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSS
T ss_pred -hhhc-------chhhhcc--ccCCCceEEEecChhhhcccCCCcceEEEEecceeeeeccCchhhhccccccccCCceE
Confidence 0000 0000000 000010112334455555557789999999999999976
Q ss_pred ------------------cHHHHHHHHHHhccCCcEEEEE
Q psy1420 183 ------------------RIDKALSEAYRVLKPGGRFLCL 204 (241)
Q Consensus 183 ------------------~~~~~l~~~~~~LkpgG~l~i~ 204 (241)
|...+|+..++.|+|||++++.
T Consensus 185 ~~~~~~~v~~ay~~Qf~~D~~~fL~~ra~eL~pGG~mvl~ 224 (374)
T 3b5i_A 185 IHGAGEKTTTAYKRQFQADLAEFLRARAAEVKRGGAMFLV 224 (374)
T ss_dssp SSSCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred eCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 3345688899999999999875
No 260
>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*
Probab=98.54 E-value=8.4e-07 Score=86.86 Aligned_cols=156 Identities=15% Similarity=0.131 Sum_probs=99.7
Q ss_pred HHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhc---------CCC-----cchhhhc--
Q psy1420 31 WKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAG---------QWK-----PYQYLVE-- 94 (241)
Q Consensus 31 ~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~-----~~~~~~~-- 94 (241)
+...++....+.++..++|.+||+|.++ +..+....+...+ .|. .|+-+.+
T Consensus 178 LAa~ll~~~~~~~~~~llDP~CGSGt~l-------------IeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea 244 (703)
T 3v97_A 178 LAAAIVMRSGWQPGTPLLDPMCGSGTLL-------------IEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEA 244 (703)
T ss_dssp HHHHHHHHTTCCTTSCEEETTCTTSHHH-------------HHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHH
T ss_pred HHHHHHHhhCCCCCCeEEecCCCCcHHH-------------HHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHH
Confidence 3466777778888899999999999987 4333211000000 000 0000000
Q ss_pred ---------ccCCCceeecCChHhHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCC
Q psy1420 95 ---------SIRQFPNQIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIE 165 (241)
Q Consensus 95 ---------~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 165 (241)
.....++|+|+++.+++.|+.++. ..++. +.+.+.+.|+.++..+
T Consensus 245 ~~~~~~~~~~~~~~i~G~Did~~av~~A~~N~~-------------------------~agv~-~~i~~~~~D~~~~~~~ 298 (703)
T 3v97_A 245 QTRARKGLAEYSSHFYGSDSDARVIQRARTNAR-------------------------LAGIG-ELITFEVKDVAQLTNP 298 (703)
T ss_dssp HHHHHHHHHHCCCCEEEEESCHHHHHHHHHHHH-------------------------HTTCG-GGEEEEECCGGGCCCS
T ss_pred HHHhhhccccCCccEEEEECCHHHHHHHHHHHH-------------------------HcCCC-CceEEEECChhhCccc
Confidence 123579999999999999999998 66766 4689999999887432
Q ss_pred --CCceeEEeee--ehhhcc-----ccHHHHHHHHHHhccCCcEEEEEecCHHHHHHHHHHCCCceEEEEEec
Q psy1420 166 --SDSYSAYTIA--FGIRNV-----TRIDKALSEAYRVLKPGGRFLCLEFSHEEFKSMIESAGFQYVTYENLT 229 (241)
Q Consensus 166 --~~~~D~V~~~--~~l~~~-----~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~l~~~Gf~~~~~~~~~ 229 (241)
.+++|+|+++ ++.+.- ...-+.+.+..+.+.|||.+++.+...+ +.+..|.+..+...+.
T Consensus 299 ~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~l~~~lk~~~~g~~~~ilt~~~~----l~~~~glk~~k~~~l~ 367 (703)
T 3v97_A 299 LPKGPYGTVLSNPPYGERLDSEPALIALHSLLGRIMKNQFGGWNLSLFSASPD----LLSCLQLRADKQYKAK 367 (703)
T ss_dssp CTTCCCCEEEECCCCCC---CCHHHHHHHHHHHHHHHHHCTTCEEEEEESCHH----HHHTTCCCEEEEEEEE
T ss_pred cccCCCCEEEeCCCccccccchhHHHHHHHHHHHHHHhhCCCCeEEEEeCCHH----HHHHhCCCcccceeee
Confidence 3389999998 544422 2223445555666678999998875442 3457788876666664
No 261
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=98.50 E-value=4.8e-07 Score=78.09 Aligned_cols=85 Identities=9% Similarity=0.192 Sum_probs=66.4
Q ss_pred HHHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHh
Q psy1420 30 LWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPR 109 (241)
Q Consensus 30 ~~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~ 109 (241)
.+.+.+.+.+...++.+|||+|||+|..+ ..++. ...+++++|+++.+
T Consensus 16 ~i~~~iv~~~~~~~~~~VLEIG~G~G~lt-------------~~La~-------------------~~~~V~avEid~~~ 63 (255)
T 3tqs_A 16 FVLQKIVSAIHPQKTDTLVEIGPGRGALT-------------DYLLT-------------------ECDNLALVEIDRDL 63 (255)
T ss_dssp HHHHHHHHHHCCCTTCEEEEECCTTTTTH-------------HHHTT-------------------TSSEEEEEECCHHH
T ss_pred HHHHHHHHhcCCCCcCEEEEEcccccHHH-------------HHHHH-------------------hCCEEEEEECCHHH
Confidence 35566777888888999999999999999 55544 34689999999999
Q ss_pred HHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCC----CCceeEEeeee
Q psy1420 110 LRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIE----SDSYSAYTIAF 176 (241)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~----~~~~D~V~~~~ 176 (241)
++.+++++. . .++++++++|+...+++ .+++| |+++.
T Consensus 64 ~~~~~~~~~-------------------------~----~~~v~~i~~D~~~~~~~~~~~~~~~~-vv~Nl 104 (255)
T 3tqs_A 64 VAFLQKKYN-------------------------Q----QKNITIYQNDALQFDFSSVKTDKPLR-VVGNL 104 (255)
T ss_dssp HHHHHHHHT-------------------------T----CTTEEEEESCTTTCCGGGSCCSSCEE-EEEEC
T ss_pred HHHHHHHHh-------------------------h----CCCcEEEEcchHhCCHHHhccCCCeE-EEecC
Confidence 999998876 2 14789999999988754 24688 55544
No 262
>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*
Probab=98.48 E-value=5e-07 Score=85.95 Aligned_cols=155 Identities=14% Similarity=0.044 Sum_probs=95.4
Q ss_pred HHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhh-----hcccCCCceeecC
Q psy1420 31 WKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYL-----VESIRQFPNQIDI 105 (241)
Q Consensus 31 ~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~D~ 105 (241)
..+.+.+.+.+.++.+|+|.+||+|.+. ..+... +.........+ .......++|+|+
T Consensus 157 iv~~mv~~l~p~~~~~VlDPaCGSG~fL-------------i~a~~~----l~~~~~~~~~~~~~~~~~~~~~~i~GiEi 219 (541)
T 2ar0_A 157 LIKTIIHLLKPQPREVVQDPAAGTAGFL-------------IEADRY----VKSQTNDLDDLDGDTQDFQIHRAFIGLEL 219 (541)
T ss_dssp HHHHHHHHHCCCTTCCEEETTCTTTHHH-------------HHHHHH----HHTTTTTTTTSCHHHHHHHHHTSEEEEES
T ss_pred HHHHHHHHhccCCCCeEecCCcccchHH-------------HHHHHH----HHHhhcccccCCHHHHhhhhcceEEEEcC
Confidence 3456677777788889999999999977 333331 11110000000 0001347999999
Q ss_pred ChHhHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCC---CCeeEEecccCCCC-CCCCceeEEeeeehhhcc
Q psy1420 106 PNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPN---PRLRFLEANAEELP-IESDSYSAYTIAFGIRNV 181 (241)
Q Consensus 106 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~d~~~~~-~~~~~~D~V~~~~~l~~~ 181 (241)
++.+++.|+.++. ..++.. .+..+.++|....+ ....+||+|+++-.+...
T Consensus 220 d~~~~~lA~~nl~-------------------------l~gi~~~~~~~~~I~~gDtL~~~~~~~~~fD~Vv~NPPf~~~ 274 (541)
T 2ar0_A 220 VPGTRRLALMNCL-------------------------LHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSA 274 (541)
T ss_dssp CHHHHHHHHHHHH-------------------------TTTCCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTC
T ss_pred CHHHHHHHHHHHH-------------------------HhCCCccccccCCeEeCCCcccccccccCCeEEEECCCcccc
Confidence 9999999998876 222220 12567788866543 234689999987433211
Q ss_pred --------------ccHHHHHHHHHHhccCCcEEEEEecCH--------HHHHHHHHHCCCceEEEEEe
Q psy1420 182 --------------TRIDKALSEAYRVLKPGGRFLCLEFSH--------EEFKSMIESAGFQYVTYENL 228 (241)
Q Consensus 182 --------------~~~~~~l~~~~~~LkpgG~l~i~~~~~--------~~~~~~l~~~Gf~~~~~~~~ 228 (241)
.....++..+.+.|||||++.++.... +.+++.|.+.+ .+..+..+
T Consensus 275 ~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a~V~p~~~L~~~~~~~~iR~~L~~~~-~l~~ii~L 342 (541)
T 2ar0_A 275 AGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKC-HLHTILRL 342 (541)
T ss_dssp SSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHHHHHCCTHHHHHHHHHHHHE-EEEEEEEC
T ss_pred cchhhHhhcCCCCCchHHHHHHHHHHHhCCCCEEEEEecCcceecCcHHHHHHHHHhhcC-CEEEEEEc
Confidence 112478999999999999988765322 45766666654 34444444
No 263
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=98.44 E-value=5e-07 Score=78.77 Aligned_cols=88 Identities=14% Similarity=0.088 Sum_probs=69.0
Q ss_pred HHHHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChH
Q psy1420 29 RLWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNP 108 (241)
Q Consensus 29 ~~~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~ 108 (241)
..+.+.+.+.++..++ +|||+|||+|..+ ..++. ...+++++|+++.
T Consensus 33 ~~i~~~Iv~~~~~~~~-~VLEIG~G~G~lt-------------~~L~~-------------------~~~~V~avEid~~ 79 (271)
T 3fut_A 33 EAHLRRIVEAARPFTG-PVFEVGPGLGALT-------------RALLE-------------------AGAEVTAIEKDLR 79 (271)
T ss_dssp HHHHHHHHHHHCCCCS-CEEEECCTTSHHH-------------HHHHH-------------------TTCCEEEEESCGG
T ss_pred HHHHHHHHHhcCCCCC-eEEEEeCchHHHH-------------HHHHH-------------------cCCEEEEEECCHH
Confidence 3456777788888888 9999999999999 55555 3468999999999
Q ss_pred hHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCC-CceeEEeeeehhh
Q psy1420 109 RLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIES-DSYSAYTIAFGIR 179 (241)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~~D~V~~~~~l~ 179 (241)
+++.+++++. . .+++++++|+...+++. ..+|.|+++.-.+
T Consensus 80 ~~~~l~~~~~-------------------------~-----~~v~vi~~D~l~~~~~~~~~~~~iv~NlPy~ 121 (271)
T 3fut_A 80 LRPVLEETLS-------------------------G-----LPVRLVFQDALLYPWEEVPQGSLLVANLPYH 121 (271)
T ss_dssp GHHHHHHHTT-------------------------T-----SSEEEEESCGGGSCGGGSCTTEEEEEEECSS
T ss_pred HHHHHHHhcC-------------------------C-----CCEEEEECChhhCChhhccCccEEEecCccc
Confidence 9999988765 1 36899999999887653 2678888776544
No 264
>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*
Probab=98.39 E-value=7.5e-07 Score=86.09 Aligned_cols=141 Identities=15% Similarity=0.112 Sum_probs=89.2
Q ss_pred cchHHHHHhhhhhccccchhhhhhhhHHHHHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhh
Q psy1420 2 KLPMYEVFENVAKSYDTMNDAMSFGIHRLWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQL 81 (241)
Q Consensus 2 ~~~~~~~f~~~~~~yd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (241)
.+..+++|+.=.-+|+...+++...+ .+...+.-...++.+|+|+|||+|-++ ...+.... .
T Consensus 320 ~s~tYevFEkD~vKy~~Ye~AI~~Al----~d~~~~~~~~~~~~vVldVGaGrGpLv-------------~~al~A~a-~ 381 (637)
T 4gqb_A 320 ESQTYEVFEKDPIKYSQYQQAIYKCL----LDRVPEEEKDTNVQVLMVLGAGRGPLV-------------NASLRAAK-Q 381 (637)
T ss_dssp CHHHHHHHTTCHHHHHHHHHHHHHHH----HHHSCGGGTTTCEEEEEEESCTTSHHH-------------HHHHHHHH-H
T ss_pred hhhhhhhhcCChhhHHHHHHHHHHHH----HHhhhhccccCCCcEEEEECCCCcHHH-------------HHHHHHHH-h
Confidence 34678888877777877654443221 111111212234557999999999886 22222100 0
Q ss_pred hhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCC
Q psy1420 82 IAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEE 161 (241)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 161 (241)
+. ...+++++|.++. ...+++... ..++. ++++++++|+++
T Consensus 382 --~~----------~~vkVyAVEknp~-A~~a~~~v~-------------------------~N~~~-dkVtVI~gd~ee 422 (637)
T 4gqb_A 382 --AD----------RRIKLYAVEKNPN-AVVTLENWQ-------------------------FEEWG-SQVTVVSSDMRE 422 (637)
T ss_dssp --TT----------CEEEEEEEESCHH-HHHHHHHHH-------------------------HHTTG-GGEEEEESCTTT
T ss_pred --cC----------CCcEEEEEECCHH-HHHHHHHHH-------------------------hccCC-CeEEEEeCccee
Confidence 00 2236899999975 445555555 55665 689999999999
Q ss_pred CCCCCCceeEEeeee----hhhccccHHHHHHHHHHhccCCcEEE
Q psy1420 162 LPIESDSYSAYTIAF----GIRNVTRIDKALSEAYRVLKPGGRFL 202 (241)
Q Consensus 162 ~~~~~~~~D~V~~~~----~l~~~~~~~~~l~~~~~~LkpgG~l~ 202 (241)
...+ +++|+|++=+ .++ +.....+....|.|||||.++
T Consensus 423 v~LP-EKVDIIVSEwMG~fLl~--E~mlevL~Ardr~LKPgGimi 464 (637)
T 4gqb_A 423 WVAP-EKADIIVSELLGSFADN--ELSPECLDGAQHFLKDDGVSI 464 (637)
T ss_dssp CCCS-SCEEEEECCCCBTTBGG--GCHHHHHHHHGGGEEEEEEEE
T ss_pred ccCC-cccCEEEEEcCcccccc--cCCHHHHHHHHHhcCCCcEEc
Confidence 8765 6899999632 222 223357777889999999976
No 265
>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}
Probab=98.36 E-value=7.9e-07 Score=76.88 Aligned_cols=73 Identities=16% Similarity=0.298 Sum_probs=52.4
Q ss_pred CeeEEecccCC-CCCCC----CceeEEeee-ehhhcccc--HHHHHHHHHHhccCCcEEEEEecCH-HHHHHHHHHCCCc
Q psy1420 151 RLRFLEANAEE-LPIES----DSYSAYTIA-FGIRNVTR--IDKALSEAYRVLKPGGRFLCLEFSH-EEFKSMIESAGFQ 221 (241)
Q Consensus 151 ~~~~~~~d~~~-~~~~~----~~~D~V~~~-~~l~~~~~--~~~~l~~~~~~LkpgG~l~i~~~~~-~~~~~~l~~~Gf~ 221 (241)
++++..+|+.+ ++... ..||+|+.- +.-...++ ...+++.+.++|+|||+|+. ++. ..++..|+++||.
T Consensus 151 ~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~fsp~~~p~lw~~~~l~~l~~~L~pGG~l~t--ysaa~~vrr~L~~aGF~ 228 (257)
T 2qy6_A 151 TLDLWFGDINELISQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLAT--FTSAGFVRRGLQEAGFT 228 (257)
T ss_dssp EEEEEESCHHHHGGGSCGGGTTCEEEEEECSSCTTTCGGGCCHHHHHHHHHHEEEEEEEEE--SCCBHHHHHHHHHHTEE
T ss_pred EEEEEECcHHHHHhhcccccCCeEEEEEECCCCcccChhhcCHHHHHHHHHHcCCCcEEEE--EeCCHHHHHHHHHCCCE
Confidence 57888999776 34222 279999974 33222233 25799999999999999874 333 6789999999999
Q ss_pred eEEE
Q psy1420 222 YVTY 225 (241)
Q Consensus 222 ~~~~ 225 (241)
+.+.
T Consensus 229 v~~~ 232 (257)
T 2qy6_A 229 MQKR 232 (257)
T ss_dssp EEEE
T ss_pred EEeC
Confidence 7654
No 266
>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35
Probab=98.35 E-value=1.5e-06 Score=78.66 Aligned_cols=124 Identities=9% Similarity=0.022 Sum_probs=77.2
Q ss_pred CCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhh--cccCCCceeecCChHhHHHHHHHHhcC
Q psy1420 43 HDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLV--ESIRQFPNQIDIPNPRLRFLEANAEEL 120 (241)
Q Consensus 43 ~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~D~s~~~~~~~~~~~~~~ 120 (241)
...+|+|+||++|.++ ..++..+=+.+.... +-+- +.+..+++..|+..+.-..+.+.+...
T Consensus 51 ~~~~IaDlGCs~G~Nt-------------~~~v~~ii~~i~~~~---~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~ 114 (359)
T 1m6e_X 51 TRLAIADLGCSSGPNA-------------LFAVTELIKTVEELR---KKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIE 114 (359)
T ss_dssp SEECCEEESCCSSTTT-------------TTGGGTTHHHHHHHH---HSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTS
T ss_pred CceEEEecCCCCCcch-------------HHHHHHHHHHHHHHH---HhcCCCCCCceEEEecCCCchHHHHHHHhcchh
Confidence 3468999999999999 322221111111100 0000 124568899999998888887766511
Q ss_pred CCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccH----------------
Q psy1420 121 PIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRI---------------- 184 (241)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~---------------- 184 (241)
+ . .+ .+.-+.-+.+.+..-.++++++|+|+++.++||..+.
T Consensus 115 ~-------------------~-~~---~~~f~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~ 171 (359)
T 1m6e_X 115 N-------------------D-VD---GVCFINGVPGSFYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANT 171 (359)
T ss_dssp C-------------------S-CT---TCEEEEEEESCSSSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSS
T ss_pred c-------------------c-cC---CCEEEEecchhhhhccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCC
Confidence 0 0 00 1011223445555556788999999999999986542
Q ss_pred -----------------HHHHHHHHHhccCCcEEEEEe
Q psy1420 185 -----------------DKALSEAYRVLKPGGRFLCLE 205 (241)
Q Consensus 185 -----------------~~~l~~~~~~LkpgG~l~i~~ 205 (241)
..+|+..++.|+|||++++..
T Consensus 172 ~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl~~ 209 (359)
T 1m6e_X 172 CPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTI 209 (359)
T ss_dssp SCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEE
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEE
Confidence 234888899999999998864
No 267
>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}
Probab=98.35 E-value=5.6e-06 Score=78.73 Aligned_cols=145 Identities=12% Similarity=0.061 Sum_probs=96.3
Q ss_pred HHHHHhhcC----CCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCCh
Q psy1420 32 KDIFIDRLG----PTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPN 107 (241)
Q Consensus 32 ~~~~~~~l~----~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~ 107 (241)
.+.|.+.+. +.++.+|+|.+||+|.+. ..+.. .+.. .....++|+|+++
T Consensus 206 v~lmv~ll~~~~~~~~~~~VlDPaCGSG~fL-------------i~a~~----~l~~----------~~~~~i~G~Eid~ 258 (542)
T 3lkd_A 206 AKLMTQIAFLGREDKQGFTLYDATMGSGSLL-------------LNAKR----YSRQ----------PQTVVYFGQELNT 258 (542)
T ss_dssp HHHHHHHHHTTCTTCTTCEEEETTCTTSTTG-------------GGHHH----HCSC----------TTTCEEEEEESCH
T ss_pred HHHHHHHHhcccCCCCCCEEeecccchhHHH-------------HHHHH----HHHh----------ccCceEEEEECcH
Confidence 344444443 457789999999999987 44433 2211 1356799999999
Q ss_pred HhHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCC--C-CCCCceeEEeeeehh--hc--
Q psy1420 108 PRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL--P-IESDSYSAYTIAFGI--RN-- 180 (241)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~-~~~~~~D~V~~~~~l--~~-- 180 (241)
.+...|+.++. -.++..++..+.++|.... | ....+||+|+++--. .+
T Consensus 259 ~~~~lA~~Nl~-------------------------l~gi~~~~~~I~~gDtL~~d~p~~~~~~fD~IvaNPPf~~~~~~ 313 (542)
T 3lkd_A 259 STYNLARMNMI-------------------------LHGVPIENQFLHNADTLDEDWPTQEPTNFDGVLMNPPYSAKWSA 313 (542)
T ss_dssp HHHHHHHHHHH-------------------------HTTCCGGGEEEEESCTTTSCSCCSSCCCBSEEEECCCTTCCCCC
T ss_pred HHHHHHHHHHH-------------------------HcCCCcCccceEecceecccccccccccccEEEecCCcCCcccc
Confidence 99999998876 3344322467788887765 3 345689999986211 11
Q ss_pred ---------------cc---c-HHHHHHHHHHhcc-CCcEEEEEecCH--------HHHHHHHHHCCCceEEEEEec
Q psy1420 181 ---------------VT---R-IDKALSEAYRVLK-PGGRFLCLEFSH--------EEFKSMIESAGFQYVTYENLT 229 (241)
Q Consensus 181 ---------------~~---~-~~~~l~~~~~~Lk-pgG~l~i~~~~~--------~~~~~~l~~~Gf~~~~~~~~~ 229 (241)
++ + --.++..+.+.|+ |||++.++.... ..+++.+.+.+. +..+..+.
T Consensus 314 ~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~gGr~a~VlP~g~Lf~~~~~~~iRk~Lle~~~-l~~II~LP 389 (542)
T 3lkd_A 314 SSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDNGVMAIVLPHGVLFRGNAEGTIRKALLEEGA-IDTVIGLP 389 (542)
T ss_dssp CGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTTCEEEEEEETHHHHCCTHHHHHHHHHHHTTC-EEEEEECC
T ss_pred chhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCceeEEEEecchHhhCCchhHHHHHHHHhCCc-eeEEEEcc
Confidence 00 0 1248899999999 999988766443 668888887754 44455553
No 268
>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}
Probab=98.34 E-value=2.8e-06 Score=80.87 Aligned_cols=157 Identities=10% Similarity=0.015 Sum_probs=95.3
Q ss_pred HHHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHh
Q psy1420 30 LWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPR 109 (241)
Q Consensus 30 ~~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~ 109 (241)
...+.|.+.+.+.++ +|+|.+||+|.+. ..+...+.+...... +.=........++|+|+++.+
T Consensus 232 ~Vv~lmv~ll~p~~~-~VlDPaCGSG~fL-------------i~a~~~l~~~~~~~~--~~~~~~~~~~~i~G~Eid~~~ 295 (544)
T 3khk_A 232 SIVTLIVEMLEPYKG-RVYDPAMGSGGFF-------------VSSDKFIEKHANVKH--YNASEQKKQISVYGQESNPTT 295 (544)
T ss_dssp HHHHHHHHHHCCCSE-EEEESSCTTCHHH-------------HHHHHHHHHHHHHHT--SCHHHHGGGEEEEECCCCHHH
T ss_pred HHHHHHHHHHhcCCC-eEeCcccCcCcHH-------------HHHHHHHHHhccccc--cchHHHhhhceEEEEeCCHHH
Confidence 345667777776665 9999999999876 332221110000000 000000013579999999999
Q ss_pred HHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCC-CCCCceeEEeee--ehhhc------
Q psy1420 110 LRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELP-IESDSYSAYTIA--FGIRN------ 180 (241)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~D~V~~~--~~l~~------ 180 (241)
.+.|+.++. ..++. .++.+.++|....+ ....+||+|+++ ++...
T Consensus 296 ~~lA~~Nl~-------------------------l~gi~-~~i~i~~gDtL~~~~~~~~~fD~Iv~NPPf~~~~~~~~~~ 349 (544)
T 3khk_A 296 WKLAAMNMV-------------------------IRGID-FNFGKKNADSFLDDQHPDLRADFVMTNPPFNMKDWWHEKL 349 (544)
T ss_dssp HHHHHHHHH-------------------------HTTCC-CBCCSSSCCTTTSCSCTTCCEEEEEECCCSSCCSCCCGGG
T ss_pred HHHHHHHHH-------------------------HhCCC-cccceeccchhcCcccccccccEEEECCCcCCccccchhh
Confidence 999998876 33333 22334666655443 345689999986 32211
Q ss_pred -----------------cc----cHHHHHHHHHHhccCCcEEEEEecCH---------HHHHHHHHHCCCceEEEEEec
Q psy1420 181 -----------------VT----RIDKALSEAYRVLKPGGRFLCLEFSH---------EEFKSMIESAGFQYVTYENLT 229 (241)
Q Consensus 181 -----------------~~----~~~~~l~~~~~~LkpgG~l~i~~~~~---------~~~~~~l~~~Gf~~~~~~~~~ 229 (241)
.+ ..-.++..+.+.|+|||++.++.... ..+++.+.+.+. +..+..+.
T Consensus 350 ~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~aiVlP~g~L~~~~~~~~~iRk~Lle~~~-l~aII~LP 427 (544)
T 3khk_A 350 ADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLAPTGSMALLLANGSMSSNTNNEGEIRKTLVEQDL-VECMVALP 427 (544)
T ss_dssp TTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHTEEEEEEEEEEEETHHHHCCGGGHHHHHHHHHHTTC-EEEEEECC
T ss_pred hhhhhhhcCcccccccccCCCcchhHHHHHHHHHHhccCceEEEEecchhhhcCcchHHHHHHHHHhCCc-HhEEEECC
Confidence 11 01268899999999999988775332 678888888765 45555554
No 269
>2qfm_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC; HET: SPD MTA; 1.80A {Homo sapiens} PDB: 3c6k_A* 3c6m_A*
Probab=98.31 E-value=2.2e-06 Score=77.67 Aligned_cols=130 Identities=12% Similarity=0.092 Sum_probs=82.1
Q ss_pred CCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCC
Q psy1420 43 HDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPI 122 (241)
Q Consensus 43 ~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~ 122 (241)
++.+||++|||+|..+ ..++. ....+++++|+++.+++.+++.+..+-
T Consensus 188 ~pkrVL~IGgG~G~~a-------------rellk------------------~~~~~Vt~VEID~~vie~Ar~~~~~l~- 235 (364)
T 2qfm_A 188 TGKDVLILGGGDGGIL-------------CEIVK------------------LKPKMVTMVEIDQMVIDGCKKYMRKTC- 235 (364)
T ss_dssp TTCEEEEEECTTCHHH-------------HHHHT------------------TCCSEEEEEESCHHHHHHHHHHCCC---
T ss_pred CCCEEEEEECChhHHH-------------HHHHH------------------CCCCEEEEEECCHHHHHHHHHHHHHhc-
Confidence 4679999999999988 44433 123579999999999999998865110
Q ss_pred ccccccccceecceeeeeeccccCCCC---CCeeEEecccCCCCC----CCCceeEEeeeehh-hc--cc---cHHHHHH
Q psy1420 123 ESDSYSAYTIAFGIRNVTRIDKIDIPN---PRLRFLEANAEELPI----ESDSYSAYTIAFGI-RN--VT---RIDKALS 189 (241)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~d~~~~~~----~~~~~D~V~~~~~l-~~--~~---~~~~~l~ 189 (241)
...+.. ++++++.+|+...-. +.++||+|++...- .. .+ --..+++
T Consensus 236 ---------------------~~~l~dp~~~rv~vi~~Da~~~L~~~~~~~~~fDvII~D~~d~P~~~~p~~L~t~eFy~ 294 (364)
T 2qfm_A 236 ---------------------GDVLDNLKGDCYQVLIEDCIPVLKRYAKEGREFDYVINDLTAVPISTSPEEDSTWEFLR 294 (364)
T ss_dssp -----------------------CCSSSEETTEEEEESCHHHHHHHHHHHTCCEEEEEEECCSSCCCCC----CHHHHHH
T ss_pred ---------------------cccccccCCCcEEEEECcHHHHHHhhhccCCCceEEEECCCCcccCcCchhhhHHHHHH
Confidence 000111 268899999776421 25689999976422 11 11 1135555
Q ss_pred HH----HHhccCCcEEEEEecCH--HHHHHHHHH---CCCceEEE
Q psy1420 190 EA----YRVLKPGGRFLCLEFSH--EEFKSMIES---AGFQYVTY 225 (241)
Q Consensus 190 ~~----~~~LkpgG~l~i~~~~~--~~~~~~l~~---~Gf~~~~~ 225 (241)
.+ .++|+|||.+++..-+. .+...++++ .-|..+..
T Consensus 295 ~~~~~~~~~L~pgGilv~qs~s~~~~e~~~~~~~~l~~~F~~v~~ 339 (364)
T 2qfm_A 295 LILDLSMKVLKQDGKYFTQGNCVNLTEALSLYEEQLGRLYCPVEF 339 (364)
T ss_dssp HHHHHHHHTEEEEEEEEEEEEETTCHHHHHHHHHHHTTSSSCEEE
T ss_pred HHHHHHHhhCCCCcEEEEEcCCcchHHHHHHHHHHHHHhCCceEE
Confidence 55 89999999998764333 333333332 34766665
No 270
>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*
Probab=98.29 E-value=9.4e-07 Score=80.93 Aligned_cols=105 Identities=11% Similarity=0.043 Sum_probs=77.7
Q ss_pred CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCC
Q psy1420 42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP 121 (241)
Q Consensus 42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~ 121 (241)
.++.+|||++||+|..+ ..++. .. . ...+++++|+++.+++.+++++.
T Consensus 51 ~~g~~VLDlfaGtG~~s-------------l~aa~----~~--~----------ga~~V~avDi~~~av~~~~~N~~--- 98 (392)
T 3axs_A 51 GRPVKVADPLSASGIRA-------------IRFLL----ET--S----------CVEKAYANDISSKAIEIMKENFK--- 98 (392)
T ss_dssp CSCEEEEESSCTTSHHH-------------HHHHH----HC--S----------CEEEEEEECSCHHHHHHHHHHHH---
T ss_pred CCCCEEEECCCcccHHH-------------HHHHH----hC--C----------CCCEEEEEECCHHHHHHHHHHHH---
Confidence 46789999999999988 43333 00 0 12579999999999999999998
Q ss_pred CccccccccceecceeeeeeccccCCCCCC-eeEEecccCCCC--CCCCceeEEeeeehhhccccHHHHHHHHHHhccCC
Q psy1420 122 IESDSYSAYTIAFGIRNVTRIDKIDIPNPR-LRFLEANAEELP--IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPG 198 (241)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~~~~--~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~Lkpg 198 (241)
..++. ++ ++++++|+...- ...++||+|++.- ...+..++..+.+.|+||
T Consensus 99 ----------------------~Ngl~-~~~v~v~~~Da~~~l~~~~~~~fD~V~lDP----~g~~~~~l~~a~~~Lk~g 151 (392)
T 3axs_A 99 ----------------------LNNIP-EDRYEIHGMEANFFLRKEWGFGFDYVDLDP----FGTPVPFIESVALSMKRG 151 (392)
T ss_dssp ----------------------HTTCC-GGGEEEECSCHHHHHHSCCSSCEEEEEECC----SSCCHHHHHHHHHHEEEE
T ss_pred ----------------------HhCCC-CceEEEEeCCHHHHHHHhhCCCCcEEEECC----CcCHHHHHHHHHHHhCCC
Confidence 66665 34 889999976531 1245799999754 123356888999999999
Q ss_pred cEEEEEe
Q psy1420 199 GRFLCLE 205 (241)
Q Consensus 199 G~l~i~~ 205 (241)
|++++..
T Consensus 152 Gll~~t~ 158 (392)
T 3axs_A 152 GILSLTA 158 (392)
T ss_dssp EEEEEEE
T ss_pred CEEEEEe
Confidence 9887754
No 271
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=98.24 E-value=2.5e-06 Score=74.61 Aligned_cols=76 Identities=14% Similarity=0.190 Sum_probs=57.7
Q ss_pred HHHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhccc-CCCceeecCChH
Q psy1420 30 LWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESI-RQFPNQIDIPNP 108 (241)
Q Consensus 30 ~~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~D~s~~ 108 (241)
.+.+.+.+.+...++.+|||+|||+|..+ ..++. ... . ..+++++|+++.
T Consensus 29 ~i~~~iv~~~~~~~~~~VLEIG~G~G~lt-------------~~La~----~~~------------~~~~~V~avDid~~ 79 (279)
T 3uzu_A 29 GVIDAIVAAIRPERGERMVEIGPGLGALT-------------GPVIA----RLA------------TPGSPLHAVELDRD 79 (279)
T ss_dssp HHHHHHHHHHCCCTTCEEEEECCTTSTTH-------------HHHHH----HHC------------BTTBCEEEEECCHH
T ss_pred HHHHHHHHhcCCCCcCEEEEEccccHHHH-------------HHHHH----hCC------------CcCCeEEEEECCHH
Confidence 35567777778888899999999999999 44444 100 1 234999999999
Q ss_pred hHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCC
Q psy1420 109 RLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIE 165 (241)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 165 (241)
+++.++++.. ++++++++|+...+++
T Consensus 80 ~l~~a~~~~~-------------------------------~~v~~i~~D~~~~~~~ 105 (279)
T 3uzu_A 80 LIGRLEQRFG-------------------------------ELLELHAGDALTFDFG 105 (279)
T ss_dssp HHHHHHHHHG-------------------------------GGEEEEESCGGGCCGG
T ss_pred HHHHHHHhcC-------------------------------CCcEEEECChhcCChh
Confidence 9999987632 3688999999988754
No 272
>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A
Probab=98.23 E-value=1.1e-06 Score=85.63 Aligned_cols=142 Identities=15% Similarity=0.143 Sum_probs=85.6
Q ss_pred chHHHHHhhhhhccccchhhhhhhhHHHHHHHHHhhcC-CCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhh
Q psy1420 3 LPMYEVFENVAKSYDTMNDAMSFGIHRLWKDIFIDRLG-PTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQL 81 (241)
Q Consensus 3 ~~~~~~f~~~~~~yd~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (241)
+..+++|++=.-+|+...+++...+ .+... ..++..|||+|||+|-++ ...+.... .
T Consensus 376 s~tYe~fekD~vRy~~Y~~AI~~al--------~d~~~~~~~~~VVldVGaGtGpLs-------------~~al~A~~-~ 433 (745)
T 3ua3_A 376 SGVYNTFEQDQIKYDVYGEAVVGAL--------KDLGADGRKTVVIYLLGGGRGPIG-------------TKILKSER-E 433 (745)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHH--------HHHHTTCCSEEEEEEESCTTCHHH-------------HHHHHHHH-H
T ss_pred hHHHHHHcCChhhHHHHHHHHHHHH--------HHhhcccCCCcEEEEECCCCCHHH-------------HHHHHHHH-H
Confidence 3566677666666666544443221 11111 123557999999999986 22222100 0
Q ss_pred hh-----cCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEe
Q psy1420 82 IA-----GQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLE 156 (241)
Q Consensus 82 ~~-----~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (241)
.. +.. ....+++++|.++.+...++.... .++. ++++++.
T Consensus 434 a~~~~~~~~~--------~~~~kVyAVEknp~A~~~l~~~~~--------------------------Ng~~-d~VtVI~ 478 (745)
T 3ua3_A 434 YNNTFRQGQE--------SLKVKLYIVEKNPNAIVTLKYMNV--------------------------RTWK-RRVTIIE 478 (745)
T ss_dssp HHHHHSTTSC--------CCEEEEEEEECCHHHHHHHHHHHH--------------------------HTTT-TCSEEEE
T ss_pred hCcccccccc--------ccccEEEEEeCChHHHHHHHHHHh--------------------------cCCC-CeEEEEe
Confidence 00 000 012489999999977655544432 3444 5799999
Q ss_pred cccCCCCCC-----CCceeEEeeeehhhcc---ccHHHHHHHHHHhccCCcEEE
Q psy1420 157 ANAEELPIE-----SDSYSAYTIAFGIRNV---TRIDKALSEAYRVLKPGGRFL 202 (241)
Q Consensus 157 ~d~~~~~~~-----~~~~D~V~~~~~l~~~---~~~~~~l~~~~~~LkpgG~l~ 202 (241)
+++++...+ .+++|+|++=+. ..+ +-....|..+.+.|||||.++
T Consensus 479 gd~eev~lp~~~~~~ekVDIIVSElm-Gsfl~nEL~pe~Ld~v~r~Lkp~Gi~i 531 (745)
T 3ua3_A 479 SDMRSLPGIAKDRGFEQPDIIVSELL-GSFGDNELSPECLDGVTGFLKPTTISI 531 (745)
T ss_dssp SCGGGHHHHHHHTTCCCCSEEEECCC-BTTBGGGSHHHHHHTTGGGSCTTCEEE
T ss_pred CchhhcccccccCCCCcccEEEEecc-ccccchhccHHHHHHHHHhCCCCcEEE
Confidence 999988653 578999997432 222 123467788889999999876
No 273
>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*
Probab=98.20 E-value=9.9e-07 Score=78.00 Aligned_cols=89 Identities=16% Similarity=0.228 Sum_probs=67.0
Q ss_pred HHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHH
Q psy1420 32 KDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLR 111 (241)
Q Consensus 32 ~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~ 111 (241)
.+.+++.+...++.+|||+|||+|..+ ..++. .. +...++++|.++.+++
T Consensus 15 l~e~l~~L~~~~g~~vLD~g~G~G~~s-------------~~la~----~~-------------~~~~VigvD~d~~al~ 64 (301)
T 1m6y_A 15 VREVIEFLKPEDEKIILDCTVGEGGHS-------------RAILE----HC-------------PGCRIIGIDVDSEVLR 64 (301)
T ss_dssp HHHHHHHHCCCTTCEEEETTCTTSHHH-------------HHHHH----HC-------------TTCEEEEEESCHHHHH
T ss_pred HHHHHHhcCCCCCCEEEEEeCCcCHHH-------------HHHHH----HC-------------CCCEEEEEECCHHHHH
Confidence 455667777788899999999999998 44444 10 1468999999999999
Q ss_pred HHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCC--CC---CCceeEEeeeehh
Q psy1420 112 FLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELP--IE---SDSYSAYTIAFGI 178 (241)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~---~~~~D~V~~~~~l 178 (241)
.+++++. ..+ .+++++++|+..++ .. ..+||.|++..+.
T Consensus 65 ~A~~~~~-------------------------~~g---~~v~~v~~d~~~l~~~l~~~g~~~~D~Vl~D~gv 108 (301)
T 1m6y_A 65 IAEEKLK-------------------------EFS---DRVSLFKVSYREADFLLKTLGIEKVDGILMDLGV 108 (301)
T ss_dssp HHHHHTG-------------------------GGT---TTEEEEECCGGGHHHHHHHTTCSCEEEEEEECSC
T ss_pred HHHHHHH-------------------------hcC---CcEEEEECCHHHHHHHHHhcCCCCCCEEEEcCcc
Confidence 9999887 433 36899999988764 11 1579999976543
No 274
>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*
Probab=98.19 E-value=1e-06 Score=80.29 Aligned_cols=116 Identities=12% Similarity=-0.055 Sum_probs=74.7
Q ss_pred CCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCC
Q psy1420 43 HDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPI 122 (241)
Q Consensus 43 ~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~ 122 (241)
++.+|||+|||+|..+ ..++. . .....++++|+++.+++.+++++..+..
T Consensus 47 ~~~~VLDl~aGtG~~~-------------l~~a~----~-------------~~~~~V~avDi~~~av~~a~~N~~~n~~ 96 (378)
T 2dul_A 47 NPKIVLDALSATGIRG-------------IRFAL----E-------------TPAEEVWLNDISEDAYELMKRNVMLNFD 96 (378)
T ss_dssp CCSEEEESSCTTSHHH-------------HHHHH----H-------------SSCSEEEEEESCHHHHHHHHHHHHHHCC
T ss_pred CCCEEEECCCchhHHH-------------HHHHH----h-------------CCCCeEEEEECCHHHHHHHHHHHHHhcc
Confidence 5779999999999988 44443 0 0234699999999999999999882100
Q ss_pred ccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCC-CCCceeEEeeeehhhccccHHHHHHHHHHhccCCcEE
Q psy1420 123 ESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPI-ESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRF 201 (241)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l 201 (241)
. ............++. +++++++|+..... ..++||+|+..- ......++..+.+.|||||.+
T Consensus 97 ~----------~~~~~~~~~~~~gl~--~i~v~~~Da~~~~~~~~~~fD~I~lDP----~~~~~~~l~~a~~~lk~gG~l 160 (378)
T 2dul_A 97 G----------ELRESKGRAILKGEK--TIVINHDDANRLMAERHRYFHFIDLDP----FGSPMEFLDTALRSAKRRGIL 160 (378)
T ss_dssp S----------CCEECSSEEEEESSS--EEEEEESCHHHHHHHSTTCEEEEEECC----SSCCHHHHHHHHHHEEEEEEE
T ss_pred c----------ccccccccccccCCC--ceEEEcCcHHHHHHhccCCCCEEEeCC----CCCHHHHHHHHHHhcCCCCEE
Confidence 0 000000000000433 37888898766421 135799998532 123467889999999999988
Q ss_pred EEE
Q psy1420 202 LCL 204 (241)
Q Consensus 202 ~i~ 204 (241)
++.
T Consensus 161 ~vt 163 (378)
T 2dul_A 161 GVT 163 (378)
T ss_dssp EEE
T ss_pred EEE
Confidence 775
No 275
>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*
Probab=98.15 E-value=2.7e-06 Score=74.12 Aligned_cols=63 Identities=11% Similarity=0.097 Sum_probs=41.0
Q ss_pred EEecccCCCCCCCCceeEEeeeehhh----ccccH--HHHHHHHHHhccCC-cEEEEEecC--HHHHHHHHH
Q psy1420 154 FLEANAEELPIESDSYSAYTIAFGIR----NVTRI--DKALSEAYRVLKPG-GRFLCLEFS--HEEFKSMIE 216 (241)
Q Consensus 154 ~~~~d~~~~~~~~~~~D~V~~~~~l~----~~~~~--~~~l~~~~~~Lkpg-G~l~i~~~~--~~~~~~~l~ 216 (241)
.+..+++...+..+++|+|+|....+ ..... ...|+.+.++|+|| |.|++-.|. .++..++++
T Consensus 126 ~~~~~~dv~~l~~~~~DlVlsD~apnsG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~KVf~pyg~~~~~l~~ 197 (277)
T 3evf_A 126 TFKDKTDIHRLEPVKCDTLLCDIGESSSSSVTEGERTVRVLDTVEKWLACGVDNFCVKVLAPYMPDVLEKLE 197 (277)
T ss_dssp EEECSCCTTTSCCCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESCTTSHHHHHHHH
T ss_pred EEeccceehhcCCCCccEEEecCccCcCchHHHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCCccHHHHHH
Confidence 34444444445567899999976554 22221 13478889999999 999998888 444444443
No 276
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Probab=98.10 E-value=2.9e-06 Score=73.02 Aligned_cols=85 Identities=11% Similarity=0.116 Sum_probs=62.0
Q ss_pred HHHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCC--ceeecCCh
Q psy1420 30 LWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQF--PNQIDIPN 107 (241)
Q Consensus 30 ~~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~D~s~ 107 (241)
.+.+.+.+.+...++.+|||+|||+|..+ . + . .... ++++|+++
T Consensus 8 ~i~~~iv~~~~~~~~~~VLEIG~G~G~lt-------------~-l-~-------------------~~~~~~v~avEid~ 53 (252)
T 1qyr_A 8 FVIDSIVSAINPQKGQAMVEIGPGLAALT-------------E-P-V-------------------GERLDQLTVIELDR 53 (252)
T ss_dssp HHHHHHHHHHCCCTTCCEEEECCTTTTTH-------------H-H-H-------------------HTTCSCEEEECCCH
T ss_pred HHHHHHHHhcCCCCcCEEEEECCCCcHHH-------------H-h-h-------------------hCCCCeEEEEECCH
Confidence 34566777777788889999999999999 4 2 2 1234 99999999
Q ss_pred HhHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCC-----CceeEEeeeeh
Q psy1420 108 PRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIES-----DSYSAYTIAFG 177 (241)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~-----~~~D~V~~~~~ 177 (241)
.+++.++++.. .. ++++++++|+...++++ +..|.|+++..
T Consensus 54 ~~~~~a~~~~~-------------------------~~----~~v~~i~~D~~~~~~~~~~~~~~~~~~vvsNlP 99 (252)
T 1qyr_A 54 DLAARLQTHPF-------------------------LG----PKLTIYQQDAMTFNFGELAEKMGQPLRVFGNLP 99 (252)
T ss_dssp HHHHHHHTCTT-------------------------TG----GGEEEECSCGGGCCHHHHHHHHTSCEEEEEECC
T ss_pred HHHHHHHHHhc-------------------------cC----CceEEEECchhhCCHHHhhcccCCceEEEECCC
Confidence 99999987664 11 36899999998876532 12456666543
No 277
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Probab=98.08 E-value=1.4e-05 Score=68.45 Aligned_cols=76 Identities=17% Similarity=0.231 Sum_probs=58.8
Q ss_pred HHHHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChH
Q psy1420 29 RLWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNP 108 (241)
Q Consensus 29 ~~~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~ 108 (241)
..+.+.+.+.+...++.+|||+|||+|..+ ..++. ....+++++|+++.
T Consensus 17 ~~i~~~iv~~~~~~~~~~VLDiG~G~G~lt-------------~~L~~------------------~~~~~v~avEid~~ 65 (249)
T 3ftd_A 17 EGVLKKIAEELNIEEGNTVVEVGGGTGNLT-------------KVLLQ------------------HPLKKLYVIELDRE 65 (249)
T ss_dssp HHHHHHHHHHTTCCTTCEEEEEESCHHHHH-------------HHHTT------------------SCCSEEEEECCCHH
T ss_pred HHHHHHHHHhcCCCCcCEEEEEcCchHHHH-------------HHHHH------------------cCCCeEEEEECCHH
Confidence 345677778888888899999999999988 44444 12368999999999
Q ss_pred hHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCC
Q psy1420 109 RLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIES 166 (241)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 166 (241)
+++.++++ . ..+++++++|+...++++
T Consensus 66 ~~~~~~~~-~------------------------------~~~v~~i~~D~~~~~~~~ 92 (249)
T 3ftd_A 66 MVENLKSI-G------------------------------DERLEVINEDASKFPFCS 92 (249)
T ss_dssp HHHHHTTS-C------------------------------CTTEEEECSCTTTCCGGG
T ss_pred HHHHHHhc-c------------------------------CCCeEEEEcchhhCChhH
Confidence 99988754 2 136899999999887653
No 278
>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}
Probab=98.06 E-value=1.1e-06 Score=75.86 Aligned_cols=85 Identities=15% Similarity=0.127 Sum_probs=60.2
Q ss_pred HhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCCh-------H
Q psy1420 36 IDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPN-------P 108 (241)
Q Consensus 36 ~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~-------~ 108 (241)
.+.+...++.+|||+|||+|..+ ..++. ...+++++|+++ .
T Consensus 76 ~~a~~~~~~~~VLDlgcG~G~~a-------------~~lA~-------------------~g~~V~~vD~s~~~~~ll~~ 123 (258)
T 2r6z_A 76 AKAVNHTAHPTVWDATAGLGRDS-------------FVLAS-------------------LGLTVTAFEQHPAVACLLSD 123 (258)
T ss_dssp HHHTTGGGCCCEEETTCTTCHHH-------------HHHHH-------------------TTCCEEEEECCHHHHHHHHH
T ss_pred HHHhCcCCcCeEEEeeCccCHHH-------------HHHHH-------------------hCCEEEEEECChhhhHHHHH
Confidence 33344456779999999999988 43333 346899999999 8
Q ss_pred hHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCC-C-CCC--CceeEEeeeehh
Q psy1420 109 RLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL-P-IES--DSYSAYTIAFGI 178 (241)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~-~~~--~~~D~V~~~~~l 178 (241)
+++.+++++. ..++. .+++++++|+.+. + .+. ++||+|++.-.+
T Consensus 124 ~l~~a~~n~~-------------------------~~~~~-~ri~~~~~d~~~~l~~~~~~~~~fD~V~~dP~~ 171 (258)
T 2r6z_A 124 GIRRALLNPE-------------------------TQDTA-ARINLHFGNAAEQMPALVKTQGKPDIVYLDPMY 171 (258)
T ss_dssp HHHHHHHSHH-------------------------HHHHH-TTEEEEESCHHHHHHHHHHHHCCCSEEEECCCC
T ss_pred HHHHHHhHHH-------------------------hhCCc-cCeEEEECCHHHHHHhhhccCCCccEEEECCCC
Confidence 8888887665 33332 3588999998764 2 333 679999986443
No 279
>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}
Probab=98.03 E-value=4.9e-05 Score=66.92 Aligned_cols=144 Identities=15% Similarity=0.172 Sum_probs=92.0
Q ss_pred CCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCC
Q psy1420 43 HDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPI 122 (241)
Q Consensus 43 ~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~ 122 (241)
...+||-+|.|.|..+ +.++. . ....+++.+|+++..++.+++.+..+
T Consensus 83 ~pk~VLIiGgGdG~~~-------------revlk--------~---------~~v~~v~~VEID~~Vv~~a~~~lp~~-- 130 (294)
T 3o4f_A 83 HAKHVLIIGGGDGAML-------------REVTR--------H---------KNVESITMVEIDAGVVSFCRQYLPNH-- 130 (294)
T ss_dssp CCCEEEEESCTTSHHH-------------HHHHT--------C---------TTCCEEEEEESCHHHHHHHHHHCHHH--
T ss_pred CCCeEEEECCCchHHH-------------HHHHH--------c---------CCcceEEEEcCCHHHHHHHHhcCccc--
Confidence 3459999999999988 55544 1 13568999999999999998765310
Q ss_pred ccccccccceecceeeeeeccccCCCCCCeeEEecccCCC-CCCCCceeEEeeeehhhccc----cHHHHHHHHHHhccC
Q psy1420 123 ESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL-PIESDSYSAYTIAFGIRNVT----RIDKALSEAYRVLKP 197 (241)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~D~V~~~~~l~~~~----~~~~~l~~~~~~Lkp 197 (241)
.......++++++.+|+... ....++||+|+.-..=...+ --..+++.+++.|+|
T Consensus 131 --------------------~~~~~~dpRv~v~~~Dg~~~l~~~~~~yDvIi~D~~dp~~~~~~L~t~eFy~~~~~~L~p 190 (294)
T 3o4f_A 131 --------------------NAGSYDDPRFKLVIDDGVNFVNQTSQTFDVIISDCTDPIGPGESLFTSAFYEGCKRCLNP 190 (294)
T ss_dssp --------------------HTTGGGCTTEEEEESCTTTTTSCSSCCEEEEEESCCCCCCTTCCSSCCHHHHHHHHTEEE
T ss_pred --------------------cccccCCCcEEEEechHHHHHhhccccCCEEEEeCCCcCCCchhhcCHHHHHHHHHHhCC
Confidence 00112236899999997764 33467899998643211000 124789999999999
Q ss_pred CcEEEEEecCH----HHHH---HHHHHCCCceEEEEEec-----CceeEEEeee
Q psy1420 198 GGRFLCLEFSH----EEFK---SMIESAGFQYVTYENLT-----FGVVAIHSGF 239 (241)
Q Consensus 198 gG~l~i~~~~~----~~~~---~~l~~~Gf~~~~~~~~~-----~~~~~~~~~~ 239 (241)
||+++...-+. +.+. +.+++. |..+...... .|..+...|.
T Consensus 191 ~Gv~v~q~~sp~~~~~~~~~~~~~l~~~-F~~v~~~~~~vPty~~g~w~f~~as 243 (294)
T 3o4f_A 191 GGIFVAQNGVCFLQQEEAIDSHRKLSHY-FSDVGFYQAAIPTYYGGIMTFAWAT 243 (294)
T ss_dssp EEEEEEEEEESSSCCHHHHHHHHHHHHH-CSEEEEEEECCTTSSSSCEEEEEEE
T ss_pred CCEEEEecCCcccChHHHHHHHHHHHhh-CCceeeeeeeeccCCCcceeheeEE
Confidence 99998754222 3333 334444 7666665443 2555554443
No 280
>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*
Probab=97.97 E-value=7.5e-06 Score=74.70 Aligned_cols=73 Identities=18% Similarity=0.223 Sum_probs=53.2
Q ss_pred ecccCCCCCCCCceeEEeeeehhhccccHH---------------------------------------HHHHHHHHhcc
Q psy1420 156 EANAEELPIESDSYSAYTIAFGIRNVTRID---------------------------------------KALSEAYRVLK 196 (241)
Q Consensus 156 ~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~---------------------------------------~~l~~~~~~Lk 196 (241)
.+.+..-.++++++|+|+++.++||+.+.. .+|+..++.|+
T Consensus 137 pgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL~~Ra~eL~ 216 (384)
T 2efj_A 137 PGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLRIHSEELI 216 (384)
T ss_dssp CSCTTSCCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHEE
T ss_pred chhhhhccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334444557789999999999999965432 12666689999
Q ss_pred CCcEEEEEec-------C-----H-------------------------------HHHHHHHHHCC-CceEEEEEe
Q psy1420 197 PGGRFLCLEF-------S-----H-------------------------------EEFKSMIESAG-FQYVTYENL 228 (241)
Q Consensus 197 pgG~l~i~~~-------~-----~-------------------------------~~~~~~l~~~G-f~~~~~~~~ 228 (241)
|||++++... . . ++++.+++++| |.+..++..
T Consensus 217 pGG~mvl~~~gr~~~~~~~~~~~~l~~al~~lv~eGli~~ek~dsf~~P~y~ps~~E~~~~le~~g~F~i~~le~~ 292 (384)
T 2efj_A 217 SRGRMLLTFICKEDEFDHPNSMDLLEMSINDLVIEGHLEEEKLDSFNVPIYAPSTEEVKRIVEEEGSFEILYLETF 292 (384)
T ss_dssp EEEEEEEEEECCCTTTCCCCHHHHHHHHHHHHHHHTSSCHHHHHTCCCSBCCCCHHHHHHHHHHHCSEEEEEEEEE
T ss_pred cCCeEEEEEecCCCcccCcccHHHHHHHHHHHHHhCCcchhhhcccCCcccCCCHHHHHHHHHHcCCceEEEEEEE
Confidence 9999998632 1 1 78888898875 788777654
No 281
>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}
Probab=97.94 E-value=2.7e-06 Score=78.31 Aligned_cols=74 Identities=14% Similarity=0.131 Sum_probs=57.7
Q ss_pred CCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCC
Q psy1420 43 HDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPI 122 (241)
Q Consensus 43 ~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~ 122 (241)
++.+|||+|||+|..+ ..+.. ...+++++|+++.+++.++.++.
T Consensus 93 ~g~~VLDLgcG~G~~a-------------l~LA~-------------------~g~~V~~VD~s~~~l~~Ar~N~~---- 136 (410)
T 3ll7_A 93 EGTKVVDLTGGLGIDF-------------IALMS-------------------KASQGIYIERNDETAVAARHNIP---- 136 (410)
T ss_dssp TTCEEEESSCSSSHHH-------------HHHHT-------------------TCSEEEEEESCHHHHHHHHHHHH----
T ss_pred CCCEEEEeCCCchHHH-------------HHHHh-------------------cCCEEEEEECCHHHHHHHHHhHH----
Confidence 4789999999999987 33333 35689999999999999999987
Q ss_pred ccccccccceecceeeeeecccc--CCCCCCeeEEecccCCC-CC-CCCceeEEeee
Q psy1420 123 ESDSYSAYTIAFGIRNVTRIDKI--DIPNPRLRFLEANAEEL-PI-ESDSYSAYTIA 175 (241)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~d~~~~-~~-~~~~~D~V~~~ 175 (241)
.. ++ .+++++++|+... +. +..+||+|++.
T Consensus 137 ---------------------~~~~gl--~~i~~i~~Da~~~L~~~~~~~fDvV~lD 170 (410)
T 3ll7_A 137 ---------------------LLLNEG--KDVNILTGDFKEYLPLIKTFHPDYIYVD 170 (410)
T ss_dssp ---------------------HHSCTT--CEEEEEESCGGGSHHHHHHHCCSEEEEC
T ss_pred ---------------------HhccCC--CcEEEEECcHHHhhhhccCCCceEEEEC
Confidence 44 44 3689999998874 32 23579999984
No 282
>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*
Probab=97.92 E-value=6.2e-05 Score=68.28 Aligned_cols=112 Identities=11% Similarity=0.140 Sum_probs=77.8
Q ss_pred CCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcC
Q psy1420 41 PTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEEL 120 (241)
Q Consensus 41 ~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~ 120 (241)
.++|.++||+||++|.++ ..++. ....++++|+.+-. ... ..
T Consensus 209 l~~G~~vlDLGAaPGGWT-------------~~l~~-------------------rg~~V~aVD~~~l~-~~l---~~-- 250 (375)
T 4auk_A 209 LANGMWAVDLGACPGGWT-------------YQLVK-------------------RNMWVYSVDNGPMA-QSL---MD-- 250 (375)
T ss_dssp SCTTCEEEEETCTTCHHH-------------HHHHH-------------------TTCEEEEECSSCCC-HHH---HT--
T ss_pred CCCCCEEEEeCcCCCHHH-------------HHHHH-------------------CCCEEEEEEhhhcC-hhh---cc--
Confidence 368999999999999999 44443 45689999986532 111 11
Q ss_pred CCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHHHHHHhccCC--
Q psy1420 121 PIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPG-- 198 (241)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~Lkpg-- 198 (241)
.+++++++.|+.....+..++|+|+|-. ...+...+..+.+.+..+
T Consensus 251 ----------------------------~~~V~~~~~d~~~~~~~~~~~D~vvsDm----~~~p~~~~~l~~~wl~~~~~ 298 (375)
T 4auk_A 251 ----------------------------TGQVTWLREDGFKFRPTRSNISWMVCDM----VEKPAKVAALMAQWLVNGWC 298 (375)
T ss_dssp ----------------------------TTCEEEECSCTTTCCCCSSCEEEEEECC----SSCHHHHHHHHHHHHHTTSC
T ss_pred ----------------------------CCCeEEEeCccccccCCCCCcCEEEEcC----CCChHHhHHHHHHHHhcccc
Confidence 1478999999888776667899999844 345666777777766655
Q ss_pred -cEEEEEecCH-----------HHHHHHHHHCCCce
Q psy1420 199 -GRFLCLEFSH-----------EEFKSMIESAGFQY 222 (241)
Q Consensus 199 -G~l~i~~~~~-----------~~~~~~l~~~Gf~~ 222 (241)
+.++...... ..+.+.++..||..
T Consensus 299 ~~aI~~lKL~mk~~~~~l~~~~~~i~~~l~~~g~~~ 334 (375)
T 4auk_A 299 RETIFNLKLPMKKRYEEVSHNLAYIQAQLDEHGINA 334 (375)
T ss_dssp SEEEEEEECCSSSHHHHHHHHHHHHHHHHHHTTCCE
T ss_pred ceEEEEEEecccchHHHHHHHHHHHHHHHHhcCcch
Confidence 4444443322 66777888999864
No 283
>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}
Probab=97.88 E-value=6.1e-05 Score=62.84 Aligned_cols=77 Identities=6% Similarity=-0.056 Sum_probs=57.0
Q ss_pred CCCceeecCChHhHHHHHHHHhcCCCccccccccceecceeeeeeccccCC--CCCCeeEEecccCCC------------
Q psy1420 97 RQFPNQIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDI--PNPRLRFLEANAEEL------------ 162 (241)
Q Consensus 97 ~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~d~~~~------------ 162 (241)
..+++.+|.++...+.+++++. +.++ . .+++++.+|+.+.
T Consensus 51 ~g~VvtvE~d~~~~~~ar~~l~-------------------------~~g~~~~-~~I~~~~gda~~~~~wg~p~~~~~~ 104 (202)
T 3cvo_A 51 GKHVTSVESDRAWARMMKAWLA-------------------------ANPPAEG-TEVNIVWTDIGPTGDWGHPVSDAKW 104 (202)
T ss_dssp TCEEEEEESCHHHHHHHHHHHH-------------------------HSCCCTT-CEEEEEECCCSSBCGGGCBSSSTTG
T ss_pred CCEEEEEeCCHHHHHHHHHHHH-------------------------HcCCCCC-CceEEEEeCchhhhcccccccchhh
Confidence 4689999999999999999988 6665 3 5788888886432
Q ss_pred ---C--------C-CCCceeEEeeeehhhccccHHHHHHHHHHhccCCcEEEEE
Q psy1420 163 ---P--------I-ESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCL 204 (241)
Q Consensus 163 ---~--------~-~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~ 204 (241)
+ . ..++||+|++-.... ...+..+.+.|+|||++++-
T Consensus 105 ~~l~~~~~~i~~~~~~~~fDlIfIDg~k~-----~~~~~~~l~~l~~GG~Iv~D 153 (202)
T 3cvo_A 105 RSYPDYPLAVWRTEGFRHPDVVLVDGRFR-----VGCALATAFSITRPVTLLFD 153 (202)
T ss_dssp GGTTHHHHGGGGCTTCCCCSEEEECSSSH-----HHHHHHHHHHCSSCEEEEET
T ss_pred hhHHHHhhhhhccccCCCCCEEEEeCCCc-----hhHHHHHHHhcCCCeEEEEe
Confidence 1 1 136899999765322 35566677999999999663
No 284
>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}
Probab=97.84 E-value=0.0001 Score=64.50 Aligned_cols=85 Identities=13% Similarity=0.212 Sum_probs=59.9
Q ss_pred ccCCCCCCeeEEecccCC-CC-CCCCceeEEeeeehhhccccHHHHHHHHHHhccCCcEEEEEecCH-----HHHHHHHH
Q psy1420 144 KIDIPNPRLRFLEANAEE-LP-IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH-----EEFKSMIE 216 (241)
Q Consensus 144 ~~~~~~~~~~~~~~d~~~-~~-~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~-----~~~~~~l~ 216 (241)
+.++..++++++.+++.+ +| .+.++||+|+.-... -......|+.+.+.|+|||++++-+... +.+.+..+
T Consensus 183 ~~gl~~~~I~li~Gda~etL~~~~~~~~d~vfIDaD~--y~~~~~~Le~~~p~L~pGGiIv~DD~~~~~G~~~Av~Ef~~ 260 (282)
T 2wk1_A 183 NYDLLDEQVRFLPGWFKDTLPTAPIDTLAVLRMDGDL--YESTWDTLTNLYPKVSVGGYVIVDDYMMCPPCKDAVDEYRA 260 (282)
T ss_dssp HTTCCSTTEEEEESCHHHHSTTCCCCCEEEEEECCCS--HHHHHHHHHHHGGGEEEEEEEEESSCTTCHHHHHHHHHHHH
T ss_pred HcCCCcCceEEEEeCHHHHHhhCCCCCEEEEEEcCCc--cccHHHHHHHHHhhcCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 666633689999999865 33 334689999876532 2334578999999999999999866542 67788888
Q ss_pred HCCCceEEEEEecCc
Q psy1420 217 SAGFQYVTYENLTFG 231 (241)
Q Consensus 217 ~~Gf~~~~~~~~~~~ 231 (241)
+.|... .+..+.++
T Consensus 261 ~~~i~~-~i~~~~~~ 274 (282)
T 2wk1_A 261 KFDIAD-ELITIDRD 274 (282)
T ss_dssp HTTCCS-CCEECSSS
T ss_pred hcCCce-EEEEecCE
Confidence 888764 34444433
No 285
>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}
Probab=97.83 E-value=1.2e-05 Score=70.17 Aligned_cols=53 Identities=15% Similarity=0.083 Sum_probs=35.7
Q ss_pred CCCCceeEEeeeehhh----ccccH--HHHHHHHHHhccCC--cEEEEEecC--HHHHHHHHH
Q psy1420 164 IESDSYSAYTIAFGIR----NVTRI--DKALSEAYRVLKPG--GRFLCLEFS--HEEFKSMIE 216 (241)
Q Consensus 164 ~~~~~~D~V~~~~~l~----~~~~~--~~~l~~~~~~Lkpg--G~l~i~~~~--~~~~~~~l~ 216 (241)
++..++|+|+|..... ..... ..+|+-+.++|+|| |.|++-.|. .++..++++
T Consensus 152 l~~~~~DvVLSDmApnsG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~KvF~pyg~~~~~l~~ 214 (282)
T 3gcz_A 152 MEVIPGDTLLCDIGESSPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIKVLCPYTPLIMEELS 214 (282)
T ss_dssp SCCCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEESCCCSHHHHHHHH
T ss_pred cCCCCcCEEEecCccCCCChHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEecCCCccHHHHHH
Confidence 3457899999876554 12211 23577778999999 999998888 544444443
No 286
>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}
Probab=97.80 E-value=0.00023 Score=67.41 Aligned_cols=156 Identities=16% Similarity=0.103 Sum_probs=93.8
Q ss_pred HHHHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChH
Q psy1420 29 RLWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNP 108 (241)
Q Consensus 29 ~~~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~ 108 (241)
+...+.|.+.+.+.++.+|+|.+||+|.+. ..... .+.................++|.|+++.
T Consensus 203 ~~Vv~lmv~l~~p~~~~~I~DPacGsGgfL-------------~~a~~----~l~~~~~~~~~~~~~~~~~i~G~E~~~~ 265 (530)
T 3ufb_A 203 RPVVRFMVEVMDPQLGESVLDPACGTGGFL-------------VEAFE----HLERQCKTVEDREVLQESSIFGGEAKSL 265 (530)
T ss_dssp HHHHHHHHHHHCCCTTCCEEETTCTTTHHH-------------HHHHH----HHHTTCCSHHHHHHHHTCCEEEECCSHH
T ss_pred HHHHHHHHHhhccCCCCEEEeCCCCcchHH-------------HHHHH----HHHHhccchhHHHHHhhhhhhhhhccHH
Confidence 345677888888888999999999999876 33333 2211110000000012357999999999
Q ss_pred hHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCC----CCCceeEEeeeehhh--c--
Q psy1420 109 RLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPI----ESDSYSAYTIAFGIR--N-- 180 (241)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~----~~~~~D~V~~~~~l~--~-- 180 (241)
+...++.++. -.++. ...+..+|....|. ...+||+|+++--+. .
T Consensus 266 ~~~la~mNl~-------------------------lhg~~--~~~I~~~dtL~~~~~~~~~~~~fD~Il~NPPf~~~~~~ 318 (530)
T 3ufb_A 266 PYLLVQMNLL-------------------------LHGLE--YPRIDPENSLRFPLREMGDKDRVDVILTNPPFGGEEEK 318 (530)
T ss_dssp HHHHHHHHHH-------------------------HHTCS--CCEEECSCTTCSCGGGCCGGGCBSEEEECCCSSCBCCH
T ss_pred HHHHHHHHHH-------------------------hcCCc--cccccccccccCchhhhcccccceEEEecCCCCccccc
Confidence 9999887765 22332 22345566554332 234799999873331 1
Q ss_pred -----cc-------cHHHHHHHHHHhcc-------CCcEEEEEecCH--------HHHHHHHHHCCCceEEEEEec
Q psy1420 181 -----VT-------RIDKALSEAYRVLK-------PGGRFLCLEFSH--------EEFKSMIESAGFQYVTYENLT 229 (241)
Q Consensus 181 -----~~-------~~~~~l~~~~~~Lk-------pgG~l~i~~~~~--------~~~~~~l~~~Gf~~~~~~~~~ 229 (241)
.+ .-..++..+.+.|| |||++.++.... ..+++.|-+. +.+..+..+.
T Consensus 319 ~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~~~~~l~~gGr~avVlP~g~Lf~~~~~~~iRk~Lle~-~~l~aII~LP 393 (530)
T 3ufb_A 319 GILGNFPEDMQTAETAMLFLQLIMRKLKRPGHGSDNGGRAAVVVPNGTLFSDGISARIKEELLKN-FNLHTIVRLP 393 (530)
T ss_dssp HHHTTSCGGGCCCBHHHHHHHHHHHHBCCTTSSSSSCCEEEEEEEHHHHHCCTHHHHHHHHHHHH-SEEEEEEECC
T ss_pred cccccCchhcccchhHHHHHHHHHHHhhhhhhccCCCceEEEEecchhhhccchHHHHHHHHhhc-CEEEEEEECC
Confidence 00 11356777778886 799988875432 4577777666 3455566654
No 287
>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*
Probab=97.71 E-value=1.2e-05 Score=88.15 Aligned_cols=130 Identities=15% Similarity=0.161 Sum_probs=65.0
Q ss_pred CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCC
Q psy1420 42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP 121 (241)
Q Consensus 42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~ 121 (241)
++..+|||+|.|+|..+ ..++..++ ..+. ....++.+|+|+...+.+++++.
T Consensus 1239 ~~~~~ilEigagtg~~t-------------~~il~~l~----~~~~--------~~~~yt~td~s~~~~~~a~~~f~--- 1290 (2512)
T 2vz8_A 1239 SPKMKVVEVLAGDGQLY-------------SRIPALLN----TQPV--------MDLDYTATDRNPQALEAAQAKLE--- 1290 (2512)
T ss_dssp SSEEEEEEESCSSSCCT-------------TTHHHHTT----TSSS--------CEEEEEEECSSSSSTTTTTTTHH---
T ss_pred CCCceEEEECCCccHHH-------------HHHHHhhc----ccCc--------ccceEEEecCChHHHHHHHHHhh---
Confidence 46789999999999988 55555222 1110 13468889999877766665544
Q ss_pred CccccccccceecceeeeeeccccCCCCCCeeEEecccCCC-CCCCCceeEEeeeehhhccccHHHHHHHHHHhccCCcE
Q psy1420 122 IESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL-PIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGR 200 (241)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~ 200 (241)
.. .+.....|.... ++....||+|+++.++|..++....|++++++|||||+
T Consensus 1291 ----------------------~~-----di~~~~~d~~~~~~~~~~~ydlvia~~vl~~t~~~~~~l~~~~~lL~p~G~ 1343 (2512)
T 2vz8_A 1291 ----------------------QL-----HVTQGQWDPANPAPGSLGKADLLVCNCALATLGDPAVAVGNMAATLKEGGF 1343 (2512)
T ss_dssp ----------------------HH-----TEEEECCCSSCCCC-----CCEEEEECC--------------------CCE
T ss_pred ----------------------hc-----ccccccccccccccCCCCceeEEEEcccccccccHHHHHHHHHHhcCCCcE
Confidence 10 011211232221 22345799999999999888999999999999999999
Q ss_pred EEEEecCH------------------------HHHHHHHHHCCCceEEEE
Q psy1420 201 FLCLEFSH------------------------EEFKSMIESAGFQYVTYE 226 (241)
Q Consensus 201 l~i~~~~~------------------------~~~~~~l~~~Gf~~~~~~ 226 (241)
+++.+... ++|.+.|+++||..+...
T Consensus 1344 l~~~e~~~~~~~g~~~~~~~~~~r~~~~~~~~~~w~~~l~~~gf~~~~~~ 1393 (2512)
T 2vz8_A 1344 LLLHTLLAGHPLGEMVGFLTSPEQGGRHLLSQDQWESLFAGASLHLVALK 1393 (2512)
T ss_dssp EEEEEC--------------------------CTTTTSSTTTTEEEEEEE
T ss_pred EEEEeccccccccccccccccccccCCcccCHHHHHHHHHhCCCceeeec
Confidence 98865221 345556677888776654
No 288
>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*
Probab=97.69 E-value=0.00012 Score=66.27 Aligned_cols=119 Identities=15% Similarity=0.172 Sum_probs=81.6
Q ss_pred HHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHH
Q psy1420 35 FIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLE 114 (241)
Q Consensus 35 ~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~ 114 (241)
....+++++|.+|||+.+|+|.=+ .+++. +. ....+++.|+++..++.+.
T Consensus 140 ~~~~L~~~pg~~VLD~CAaPGGKT-------------~~la~----~~-------------~~~~l~A~D~~~~R~~~l~ 189 (359)
T 4fzv_A 140 PVLALGLQPGDIVLDLCAAPGGKT-------------LALLQ----TG-------------CCRNLAANDLSPSRIARLQ 189 (359)
T ss_dssp HHHHHCCCTTEEEEESSCTTCHHH-------------HHHHH----TT-------------CEEEEEEECSCHHHHHHHH
T ss_pred HHHHhCCCCCCEEEEecCCccHHH-------------HHHHH----hc-------------CCCcEEEEcCCHHHHHHHH
Confidence 344567899999999999999877 44443 11 2346999999999999998
Q ss_pred HHHhcCCCccccccccceecceeeeeeccccCCC----CCCeeEEecccCCCC-CCCCceeEEee----ee---hhh-cc
Q psy1420 115 ANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIP----NPRLRFLEANAEELP-IESDSYSAYTI----AF---GIR-NV 181 (241)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~d~~~~~-~~~~~~D~V~~----~~---~l~-~~ 181 (241)
+++. +.+.. ..++.+...|....+ ...+.||.|++ +. +.. .-
T Consensus 190 ~~l~-------------------------r~~~~~~~~~~~v~v~~~D~~~~~~~~~~~fD~VLlDaPCSg~g~g~~r~~ 244 (359)
T 4fzv_A 190 KILH-------------------------SYVPEEIRDGNQVRVTSWDGRKWGELEGDTYDRVLVDVPCTTDRHSLHEEE 244 (359)
T ss_dssp HHHH-------------------------HHSCTTTTTSSSEEEECCCGGGHHHHSTTCEEEEEEECCCCCHHHHTTCCT
T ss_pred HHHH-------------------------HhhhhhhccCCceEEEeCchhhcchhccccCCEEEECCccCCCCCcccccC
Confidence 8877 22221 135777788877653 33568999994 33 111 00
Q ss_pred c------c----------HHHHHHHHHHhccCCcEEEEEecCH
Q psy1420 182 T------R----------IDKALSEAYRVLKPGGRFLCLEFSH 208 (241)
Q Consensus 182 ~------~----------~~~~l~~~~~~LkpgG~l~i~~~~~ 208 (241)
+ . -.++|..+.+.|||||+|+-++-+.
T Consensus 245 ~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsTCSl 287 (359)
T 4fzv_A 245 NNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYSTCSL 287 (359)
T ss_dssp TCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEESCC
T ss_pred hhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCC
Confidence 0 0 1367888999999999998876554
No 289
>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A
Probab=97.67 E-value=2.3e-05 Score=67.76 Aligned_cols=98 Identities=10% Similarity=0.063 Sum_probs=61.6
Q ss_pred HHHHHhhcCCCCC--CeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHh
Q psy1420 32 KDIFIDRLGPTHD--TKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPR 109 (241)
Q Consensus 32 ~~~~~~~l~~~~~--~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~ 109 (241)
.+.+.+.+..+++ .+|||++||+|..+ ..++. ...+++++|.++.+
T Consensus 75 ~e~l~~al~l~~g~~~~VLDl~~G~G~da-------------l~lA~-------------------~g~~V~~vE~~~~~ 122 (258)
T 2oyr_A 75 GEAVAKAVGIKGDYLPDVVDATAGLGRDA-------------FVLAS-------------------VGCRVRMLERNPVV 122 (258)
T ss_dssp GSHHHHHTTCBTTBCCCEEETTCTTCHHH-------------HHHHH-------------------HTCCEEEEECCHHH
T ss_pred HHHHHHHhcccCCCCCEEEEcCCcCCHHH-------------HHHHH-------------------cCCEEEEEECCHHH
Confidence 3555666666666 89999999999988 43333 35579999999987
Q ss_pred HHHHHHHHhcCCCccccccccceecceeeeeeccccC-CCCCCeeEEecccCCC-CCCCCceeEEeeeehhhc
Q psy1420 110 LRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKID-IPNPRLRFLEANAEEL-PIESDSYSAYTIAFGIRN 180 (241)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~~~~-~~~~~~~D~V~~~~~l~~ 180 (241)
.+.++..+.... .+....+ +. .+++++++|..+. +...++||+|++.-...+
T Consensus 123 ~~l~~~~l~~a~------------------~~~~~~~~l~-~~i~~~~~D~~~~L~~~~~~fDvV~lDP~y~~ 176 (258)
T 2oyr_A 123 AALLDDGLARGY------------------ADAEIGGWLQ-ERLQLIHASSLTALTDITPRPQVVYLDPMFPH 176 (258)
T ss_dssp HHHHHHHHHHHH------------------HCTTTHHHHH-HHEEEEESCHHHHSTTCSSCCSEEEECCCCCC
T ss_pred HHHHHHHHHHHH------------------hhHhhhhhhh-cCEEEEECCHHHHHHhCcccCCEEEEcCCCCC
Confidence 666655443000 0000001 11 2588999997763 322347999998765544
No 290
>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}
Probab=97.50 E-value=0.00052 Score=67.89 Aligned_cols=136 Identities=13% Similarity=-0.000 Sum_probs=79.8
Q ss_pred CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHH--HHHHhc
Q psy1420 42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFL--EANAEE 119 (241)
Q Consensus 42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~--~~~~~~ 119 (241)
.++.+|||.|||+|.+. ..++. .+... ....++|+|+++.+++.| +.++..
T Consensus 320 ~~g~rVLDPaCGSG~FL-------------IaaA~----~l~ei----------~~~~IyGvEIDp~Al~LAK~RlNL~l 372 (878)
T 3s1s_A 320 TEDEVISDPAAGSGNLL-------------ATVSA----GFNNV----------MPRQIWANDIETLFLELLSIRLGLLF 372 (878)
T ss_dssp CTTCEEEETTCTTSHHH-------------HHHHH----TSTTC----------CGGGEEEECSCGGGHHHHHHHHHTTS
T ss_pred CCCCEEEECCCCccHHH-------------HHHHH----Hhccc----------CCCeEEEEECCHHHHHHHHHHHHHHH
Confidence 46789999999999987 33333 11100 135789999999999998 444330
Q ss_pred CCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCC-CCCCCceeEEeeeehhh--c-cc-------------
Q psy1420 120 LPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL-PIESDSYSAYTIAFGIR--N-VT------------- 182 (241)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~D~V~~~~~l~--~-~~------------- 182 (241)
. ....++. ...+...|+... +....+||+|+++--.. . ..
T Consensus 373 N---------------------~LlhGi~--~~~I~~dD~L~~~~~~~~kFDVVIgNPPYg~~~~~~~e~kd~~~r~~~g 429 (878)
T 3s1s_A 373 P---------------------QLVSSNN--APTITGEDVCSLNPEDFANVSVVVMNPPYVSGVTDPAIKRKFAHKIIQL 429 (878)
T ss_dssp T---------------------TTCBTTB--CCEEECCCGGGCCGGGGTTEEEEEECCBCCSSCCCHHHHHHHHHHHHHH
T ss_pred h---------------------hhhcCCC--cceEEecchhcccccccCCCCEEEECCCccccccchhhhhhHHHHhhhh
Confidence 0 0001111 123444555442 22346799999863221 0 00
Q ss_pred -------------cHHHHHHHHHHhccCCcEEEEEecCH---------HHHHHHHHHCCCceEEEEEe
Q psy1420 183 -------------RIDKALSEAYRVLKPGGRFLCLEFSH---------EEFKSMIESAGFQYVTYENL 228 (241)
Q Consensus 183 -------------~~~~~l~~~~~~LkpgG~l~i~~~~~---------~~~~~~l~~~Gf~~~~~~~~ 228 (241)
-...++..+.+.|+|||++.++.... +.+++.+.+. +.+..+..+
T Consensus 430 ~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrLAfIlP~s~Lf~sg~~~kkLRk~LLe~-~~I~aIIdL 496 (878)
T 3s1s_A 430 TGNRPQTLFGQIGVEALFLELVTELVQDGTVISAIMPKQYLTAQGNESKAFREFLVGN-FGLEHIFLY 496 (878)
T ss_dssp HSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEEEEEEETHHHHCCSHHHHHHHHHHTTT-TCEEEEEEC
T ss_pred ccccccccccccchHHHHHHHHHHhcCCCcEEEEEEChHHhccCChHHHHHHHHHHhC-CCeEEEEEC
Confidence 12356788999999999998876443 5566666555 333444444
No 291
>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23
Probab=97.49 E-value=0.00013 Score=63.75 Aligned_cols=85 Identities=13% Similarity=0.091 Sum_probs=63.6
Q ss_pred HHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhH
Q psy1420 31 WKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRL 110 (241)
Q Consensus 31 ~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~ 110 (241)
+.+.+++.+.+++++.++|++||.|..+ ..++. ....++|+|.++.++
T Consensus 10 Ll~e~le~L~~~~gg~~VD~T~G~GGHS-------------~~il~-------------------~~g~VigiD~Dp~Ai 57 (285)
T 1wg8_A 10 LYQEALDLLAVRPGGVYVDATLGGAGHA-------------RGILE-------------------RGGRVIGLDQDPEAV 57 (285)
T ss_dssp THHHHHHHHTCCTTCEEEETTCTTSHHH-------------HHHHH-------------------TTCEEEEEESCHHHH
T ss_pred HHHHHHHhhCCCCCCEEEEeCCCCcHHH-------------HHHHH-------------------CCCEEEEEeCCHHHH
Confidence 4566777888889999999999999999 55554 246899999999999
Q ss_pred HHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCC-----CCCCceeEEeeeehh
Q psy1420 111 RFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELP-----IESDSYSAYTIAFGI 178 (241)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~~~~~D~V~~~~~l 178 (241)
+.+++ +. . +++.++++++.+++ ...+++|.|++..+.
T Consensus 58 ~~A~~-L~-------------------------~-----~rv~lv~~~f~~l~~~L~~~g~~~vDgIL~DLGv 99 (285)
T 1wg8_A 58 ARAKG-LH-------------------------L-----PGLTVVQGNFRHLKRHLAALGVERVDGILADLGV 99 (285)
T ss_dssp HHHHH-TC-------------------------C-----TTEEEEESCGGGHHHHHHHTTCSCEEEEEEECSC
T ss_pred HHHHh-hc-------------------------c-----CCEEEEECCcchHHHHHHHcCCCCcCEEEeCCcc
Confidence 99987 65 2 26778888877653 112468888865443
No 292
>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*
Probab=97.46 E-value=0.00048 Score=59.39 Aligned_cols=61 Identities=11% Similarity=0.079 Sum_probs=39.5
Q ss_pred eEEec-ccCCCCCCCCceeEEeeeehhh----cccc--HHHHHHHHHHhccCCc-EEEEEecCH--HHHHHHH
Q psy1420 153 RFLEA-NAEELPIESDSYSAYTIAFGIR----NVTR--IDKALSEAYRVLKPGG-RFLCLEFSH--EEFKSMI 215 (241)
Q Consensus 153 ~~~~~-d~~~~~~~~~~~D~V~~~~~l~----~~~~--~~~~l~~~~~~LkpgG-~l~i~~~~~--~~~~~~l 215 (241)
.+..+ |+.+++ ..++|+|+|-..-. .+.. ...+|+-+.++|+||| .|++-.|.. +++.+.+
T Consensus 125 ~~~~G~Df~~~~--~~~~DvVLSDMAPnSG~~~vD~~Rs~~aL~~A~~~Lk~gG~~FvvKVFqg~~~~~~~~l 195 (269)
T 2px2_A 125 TMKSGVDVFYKP--SEISDTLLCDIGESSPSAEIEEQRTLRILEMVSDWLSRGPKEFCIKILCPYMPKVIEKL 195 (269)
T ss_dssp EEECSCCGGGSC--CCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESCTTSHHHHHHH
T ss_pred EeeccCCccCCC--CCCCCEEEeCCCCCCCccHHHHHHHHHHHHHHHHHhhcCCcEEEEEECCCCchHHHHHH
Confidence 44445 887653 45799999854332 1111 1136777889999999 899888877 5665543
No 293
>3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A*
Probab=97.44 E-value=0.00036 Score=61.70 Aligned_cols=85 Identities=13% Similarity=0.060 Sum_probs=54.9
Q ss_pred eeEEecccCC-CC-CCCCceeEEeeee-hhhccccH--HHHHHHHHHhccCCcEEEEEecCH-HHHHHHHHHCCCceEEE
Q psy1420 152 LRFLEANAEE-LP-IESDSYSAYTIAF-GIRNVTRI--DKALSEAYRVLKPGGRFLCLEFSH-EEFKSMIESAGFQYVTY 225 (241)
Q Consensus 152 ~~~~~~d~~~-~~-~~~~~~D~V~~~~-~l~~~~~~--~~~l~~~~~~LkpgG~l~i~~~~~-~~~~~~l~~~Gf~~~~~ 225 (241)
+++..+|+.. ++ +...++|+++.-. +-..-+++ ..+++.++++++|||.+. +++. ..++..|+++||.+.+.
T Consensus 168 L~l~~GDa~~~l~~l~~~~~Da~flDgFsP~kNPeLWs~e~f~~l~~~~~pgg~la--TYtaag~VRR~L~~aGF~V~k~ 245 (308)
T 3vyw_A 168 LKVLLGDARKRIKEVENFKADAVFHDAFSPYKNPELWTLDFLSLIKERIDEKGYWV--SYSSSLSVRKSLLTLGFKVGSS 245 (308)
T ss_dssp EEEEESCHHHHGGGCCSCCEEEEEECCSCTTTSGGGGSHHHHHHHHTTEEEEEEEE--ESCCCHHHHHHHHHTTCEEEEE
T ss_pred EEEEechHHHHHhhhcccceeEEEeCCCCcccCcccCCHHHHHHHHHHhCCCcEEE--EEeCcHHHHHHHHHCCCEEEec
Confidence 4566777654 22 3344799988532 22222222 589999999999999886 5655 88999999999997766
Q ss_pred EEecCceeEEEeee
Q psy1420 226 ENLTFGVVAIHSGF 239 (241)
Q Consensus 226 ~~~~~~~~~~~~~~ 239 (241)
.- .++=-.+.+|.
T Consensus 246 ~G-~g~KReml~A~ 258 (308)
T 3vyw_A 246 RE-IGRKRKGTVAS 258 (308)
T ss_dssp EC-C---CEEEEEE
T ss_pred CC-CCCCCceeEEe
Confidence 52 23333444443
No 294
>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*
Probab=97.30 E-value=0.00035 Score=61.39 Aligned_cols=51 Identities=16% Similarity=0.120 Sum_probs=34.3
Q ss_pred CCCceeEEeeeehhh----ccccH--HHHHHHHHHhccCC-cEEEEEecC--HHHHHHHH
Q psy1420 165 ESDSYSAYTIAFGIR----NVTRI--DKALSEAYRVLKPG-GRFLCLEFS--HEEFKSMI 215 (241)
Q Consensus 165 ~~~~~D~V~~~~~l~----~~~~~--~~~l~~~~~~Lkpg-G~l~i~~~~--~~~~~~~l 215 (241)
...++|+|+|...-. ..... ...|+-+.++|+|| |.|++-.|. .++..+++
T Consensus 144 ~~~~~DlVlsD~APnsG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~KvF~~yG~~~~~ll 203 (300)
T 3eld_A 144 PTEPSDTLLCDIGESSSNPLVERDRTMKVLENFERWKHVNTENFCVKVLAPYHPDVIEKL 203 (300)
T ss_dssp CCCCCSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCCEEEEEESSTTSHHHHHHH
T ss_pred CCCCcCEEeecCcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeccccCccHHHHH
Confidence 356899999865544 11111 24577788999999 999999888 54444443
No 295
>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}
Probab=97.21 E-value=0.0015 Score=57.43 Aligned_cols=123 Identities=15% Similarity=0.109 Sum_probs=74.9
Q ss_pred HHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHH
Q psy1420 33 DIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRF 112 (241)
Q Consensus 33 ~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~ 112 (241)
..+.+....+++.+|+|+||++|.++ ..++. .. ....++++|+...--
T Consensus 84 ~ei~~~~~l~~~~~VlDLGaapGGws-------------q~~~~--------~~---------gv~~V~avdvG~~~h-- 131 (321)
T 3lkz_A 84 RWLVERRFLEPVGKVIDLGCGRGGWC-------------YYMAT--------QK---------RVQEVRGYTKGGPGH-- 131 (321)
T ss_dssp HHHHHTTSCCCCEEEEEETCTTCHHH-------------HHHTT--------CT---------TEEEEEEECCCSTTS--
T ss_pred HHHHHhcCCCCCCEEEEeCCCCCcHH-------------HHHHh--------hc---------CCCEEEEEEcCCCCc--
Confidence 34455556678889999999999999 21221 11 234789999865411
Q ss_pred HHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEec-ccCCCCCCCCceeEEeeeehhhccccH-------
Q psy1420 113 LEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEA-NAEELPIESDSYSAYTIAFGIRNVTRI------- 184 (241)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-d~~~~~~~~~~~D~V~~~~~l~~~~~~------- 184 (241)
..|....++ +.+ -+.+... |+..++. .++|+|+|--+ ..-+++
T Consensus 132 ------e~P~~~~ql------------------~w~--lV~~~~~~Dv~~l~~--~~~D~ivcDig-eSs~~~~ve~~Rt 182 (321)
T 3lkz_A 132 ------EEPQLVQSY------------------GWN--IVTMKSGVDVFYRPS--ECCDTLLCDIG-ESSSSAEVEEHRT 182 (321)
T ss_dssp ------CCCCCCCBT------------------TGG--GEEEECSCCTTSSCC--CCCSEEEECCC-CCCSCHHHHHHHH
T ss_pred ------cCcchhhhc------------------CCc--ceEEEeccCHhhCCC--CCCCEEEEECc-cCCCChhhhhhHH
Confidence 011111111 111 2556655 6666543 56899998766 333322
Q ss_pred HHHHHHHHHhccCC-cEEEEEecCH--HHHHHHHH
Q psy1420 185 DKALSEAYRVLKPG-GRFLCLEFSH--EEFKSMIE 216 (241)
Q Consensus 185 ~~~l~~~~~~Lkpg-G~l~i~~~~~--~~~~~~l~ 216 (241)
-++|+-+.+.|++| |-++|-.+.+ .++.+.++
T Consensus 183 l~vLel~~~wL~~~~~~f~~KVl~pY~~~v~e~l~ 217 (321)
T 3lkz_A 183 IRVLEMVEDWLHRGPREFCVKVLCPYMPKVIEKME 217 (321)
T ss_dssp HHHHHHHHHHHTTCCCEEEEEESCTTSHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCcEEEEEcCCCChHHHHHHH
Confidence 24777778999999 8999888777 55544444
No 296
>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*
Probab=97.12 E-value=0.002 Score=58.58 Aligned_cols=131 Identities=11% Similarity=0.138 Sum_probs=80.9
Q ss_pred CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCC
Q psy1420 42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP 121 (241)
Q Consensus 42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~ 121 (241)
.++.+||-+|.|.|..+ +.++. ....+++.+|+++..++.+++....+.
T Consensus 204 ~~pkrVLIIGgGdG~~~-------------revlk------------------h~~~~V~~VEIDp~VVe~ar~yfp~~~ 252 (381)
T 3c6k_A 204 YTGKDVLILGGGDGGIL-------------CEIVK------------------LKPKMVTMVEIDQMVIDGCKKYMRKTC 252 (381)
T ss_dssp CTTCEEEEEECTTCHHH-------------HHHHT------------------TCCSEEEEEESCHHHHHHHHHHCCC--
T ss_pred CCCCeEEEECCCcHHHH-------------HHHHh------------------cCCceeEEEccCHHHHHHHHhhchhhh
Confidence 34569999999999988 54444 123579999999999999987654110
Q ss_pred CccccccccceecceeeeeeccccCC-CCCCeeEEecccCCC----CCCCCceeEEeeeehhhc-ccc---------HHH
Q psy1420 122 IESDSYSAYTIAFGIRNVTRIDKIDI-PNPRLRFLEANAEEL----PIESDSYSAYTIAFGIRN-VTR---------IDK 186 (241)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~~~----~~~~~~~D~V~~~~~l~~-~~~---------~~~ 186 (241)
.. .... ..++++++..|+... +...++||+|+.-..-.. ..+ ...
T Consensus 253 --~~------------------~~d~pr~~rv~vii~Da~~fl~~~~~~~~~yDvIIvDl~D~~~s~~p~g~a~~Lft~e 312 (381)
T 3c6k_A 253 --GD------------------VLDNLKGDCYQVLIEDCIPVLKRYAKEGREFDYVINDLTAVPISTSPEEDSTWEFLRL 312 (381)
T ss_dssp ----------------------CCSSSEETTEEEEESCHHHHHHHHHHHTCCEEEEEEECCSSCCCCC----CHHHHHHH
T ss_pred --hh------------------hhccccccceeeehHHHHHHHHhhhhccCceeEEEECCCCCcccCcccCcchHHHHHH
Confidence 00 0000 013578888886542 122467999986532110 011 246
Q ss_pred HHHHHHHhccCCcEEEEEe---cCH---HHHHHHHHHCCCceEE
Q psy1420 187 ALSEAYRVLKPGGRFLCLE---FSH---EEFKSMIESAGFQYVT 224 (241)
Q Consensus 187 ~l~~~~~~LkpgG~l~i~~---~~~---~~~~~~l~~~Gf~~~~ 224 (241)
+++.+++.|+|||+++... +.. ..+.+.+++. |..+.
T Consensus 313 Fy~~~~~~L~p~GVlv~Q~~s~~~~~~~~~i~~tl~~v-F~~v~ 355 (381)
T 3c6k_A 313 ILDLSMKVLKQDGKYFTQGNCVNLTEALSLYEEQLGRL-YCPVE 355 (381)
T ss_dssp HHHHHHHTEEEEEEEEEEEEETTCHHHHHHHHHHHTTS-SSCEE
T ss_pred HHHHHHHhcCCCCEEEEecCCCcchhHHHHHHHHHHHh-CCcce
Confidence 7889999999999998642 222 4455566665 44443
No 297
>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*
Probab=96.91 E-value=0.0094 Score=50.91 Aligned_cols=115 Identities=13% Similarity=0.137 Sum_probs=71.1
Q ss_pred HHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHH
Q psy1420 33 DIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRF 112 (241)
Q Consensus 33 ~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~ 112 (241)
..+.+....+++.+|+|+||++|.++ ..++. .. ....++++|+...-.
T Consensus 68 ~ei~ek~~l~~g~~VvDLGaapGGWS-------------q~~a~--------~~---------g~~~V~avdvG~~gh-- 115 (267)
T 3p8z_A 68 QWFVERNMVIPEGRVIDLGCGRGGWS-------------YYCAG--------LK---------KVTEVRGYTKGGPGH-- 115 (267)
T ss_dssp HHHHHTTSSCCCEEEEEESCTTSHHH-------------HHHHT--------ST---------TEEEEEEECCCSTTS--
T ss_pred HHHHHhcCCCCCCEEEEcCCCCCcHH-------------HHHHH--------hc---------CCCEEEEEecCCCCc--
Confidence 44555556678899999999999999 21221 11 234789999865421
Q ss_pred HHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEec-ccCCCCCCCCceeEEeeeehhhccc------cHH
Q psy1420 113 LEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEA-NAEELPIESDSYSAYTIAFGIRNVT------RID 185 (241)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-d~~~~~~~~~~~D~V~~~~~l~~~~------~~~ 185 (241)
+.|.... .-+++ .++|... |+..++. .++|.|+|.-+=..-. ..-
T Consensus 116 ------e~P~~~~------------------s~gwn--~v~fk~gvDv~~~~~--~~~DtllcDIgeSs~~~~vE~~Rtl 167 (267)
T 3p8z_A 116 ------EEPVPMS------------------TYGWN--IVKLMSGKDVFYLPP--EKCDTLLCDIGESSPSPTVEESRTI 167 (267)
T ss_dssp ------CCCCCCC------------------CTTTT--SEEEECSCCGGGCCC--CCCSEEEECCCCCCSCHHHHHHHHH
T ss_pred ------cCcchhh------------------hcCcC--ceEEEeccceeecCC--ccccEEEEecCCCCCChhhhhhHHH
Confidence 1122111 22333 5778877 8765543 5699999865442211 112
Q ss_pred HHHHHHHHhccCCcEEEEEecCH
Q psy1420 186 KALSEAYRVLKPGGRFLCLEFSH 208 (241)
Q Consensus 186 ~~l~~~~~~LkpgG~l~i~~~~~ 208 (241)
++|+-+.+.|++ |-++|-.+.+
T Consensus 168 rvLela~~wL~~-~~fc~KVl~p 189 (267)
T 3p8z_A 168 RVLKMVEPWLKN-NQFCIKVLNP 189 (267)
T ss_dssp HHHHHHGGGCSS-CEEEEEESCC
T ss_pred HHHHHHHHhccc-CCEEEEEccC
Confidence 477777899998 7888876665
No 298
>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A
Probab=96.32 E-value=0.0034 Score=54.66 Aligned_cols=54 Identities=7% Similarity=0.051 Sum_probs=42.1
Q ss_pred HHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHH
Q psy1420 32 KDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLR 111 (241)
Q Consensus 32 ~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~ 111 (241)
.+.+++... .++..|||++||+|.++ ..+.. .+..++++|+++.+++
T Consensus 225 ~~~~i~~~~-~~~~~vlD~f~GsGt~~-------------~~a~~-------------------~g~~~~g~e~~~~~~~ 271 (297)
T 2zig_A 225 AERLVRMFS-FVGDVVLDPFAGTGTTL-------------IAAAR-------------------WGRRALGVELVPRYAQ 271 (297)
T ss_dssp HHHHHHHHC-CTTCEEEETTCTTTHHH-------------HHHHH-------------------TTCEEEEEESCHHHHH
T ss_pred HHHHHHHhC-CCCCEEEECCCCCCHHH-------------HHHHH-------------------cCCeEEEEeCCHHHHH
Confidence 344444444 57889999999999988 44433 4568999999999999
Q ss_pred HHHHHHh
Q psy1420 112 FLEANAE 118 (241)
Q Consensus 112 ~~~~~~~ 118 (241)
.+++++.
T Consensus 272 ~a~~r~~ 278 (297)
T 2zig_A 272 LAKERFA 278 (297)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998876
No 299
>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}
Probab=96.14 E-value=0.0053 Score=54.94 Aligned_cols=55 Identities=15% Similarity=0.066 Sum_probs=44.0
Q ss_pred HHHHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhH
Q psy1420 31 WKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRL 110 (241)
Q Consensus 31 ~~~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~ 110 (241)
+.+.+++.+.+++++.++|+.+|.|..+ ..++..++ ....++++|.++.++
T Consensus 45 Ll~Evl~~L~i~pggiyVD~TlG~GGHS-------------~~iL~~lg----------------~~GrVig~D~Dp~Al 95 (347)
T 3tka_A 45 LLDEAVNGLNIRPDGIYIDGTFGRGGHS-------------RLILSQLG----------------EEGRLLAIDRDPQAI 95 (347)
T ss_dssp TTHHHHHHTCCCTTCEEEESCCTTSHHH-------------HHHHTTCC----------------TTCEEEEEESCHHHH
T ss_pred cHHHHHHhhCCCCCCEEEEeCcCCCHHH-------------HHHHHhCC----------------CCCEEEEEECCHHHH
Confidence 4577788888899999999999999998 44444221 356899999999999
Q ss_pred HHHH
Q psy1420 111 RFLE 114 (241)
Q Consensus 111 ~~~~ 114 (241)
+.++
T Consensus 96 ~~A~ 99 (347)
T 3tka_A 96 AVAK 99 (347)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 9873
No 300
>3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus}
Probab=95.41 E-value=0.073 Score=46.86 Aligned_cols=71 Identities=10% Similarity=0.046 Sum_probs=45.6
Q ss_pred EEecccCCCCCCCCceeEEeeeehh-----hcccc------HHHHHHHHHHhccCCcEEEEEecCH---HHHHHHHHHCC
Q psy1420 154 FLEANAEELPIESDSYSAYTIAFGI-----RNVTR------IDKALSEAYRVLKPGGRFLCLEFSH---EEFKSMIESAG 219 (241)
Q Consensus 154 ~~~~d~~~~~~~~~~~D~V~~~~~l-----~~~~~------~~~~l~~~~~~LkpgG~l~i~~~~~---~~~~~~l~~~G 219 (241)
++++|...... .++||+|++-..- ..... -+.+++-+.+.|+|||.|++-.|.. +.+.++. + -
T Consensus 156 ~IqGD~~~~~~-~~k~DLVISDMAPNtTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvVKVFQGsg~~~L~~lr-k-~ 232 (344)
T 3r24_A 156 TLIGDCATVHT-ANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHSWNADLYKLM-G-H 232 (344)
T ss_dssp EEESCGGGEEE-SSCEEEEEECCCCTTSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSSCCHHHHHHH-T-T
T ss_pred EEEcccccccc-CCCCCEEEecCCCCcCCccccchhHHHHHHHHHHHHHHHhCcCCCEEEEEEecCCCHHHHHHHH-h-h
Confidence 47777655432 4789999964221 11111 3577788889999999999987766 3444433 3 6
Q ss_pred CceEEEEE
Q psy1420 220 FQYVTYEN 227 (241)
Q Consensus 220 f~~~~~~~ 227 (241)
|..++...
T Consensus 233 F~~VK~fK 240 (344)
T 3r24_A 233 FSWWTAFV 240 (344)
T ss_dssp EEEEEEEE
T ss_pred CCeEEEEC
Confidence 87776663
No 301
>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A
Probab=94.96 E-value=0.056 Score=46.81 Aligned_cols=78 Identities=21% Similarity=0.301 Sum_probs=54.4
Q ss_pred CeeEEecccCC-CC-CCCCceeEEeeeehhhc--------------------cccHHHHHHHHHHhccCCcEEEEEecC-
Q psy1420 151 RLRFLEANAEE-LP-IESDSYSAYTIAFGIRN--------------------VTRIDKALSEAYRVLKPGGRFLCLEFS- 207 (241)
Q Consensus 151 ~~~~~~~d~~~-~~-~~~~~~D~V~~~~~l~~--------------------~~~~~~~l~~~~~~LkpgG~l~i~~~~- 207 (241)
+.+++++|..+ ++ +++++||+|+++--... .......+.++.++|||||.+++..-.
T Consensus 21 ~~~i~~gD~~~~l~~l~~~s~DlIvtdPPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~rvLk~~G~l~i~~~d~ 100 (297)
T 2zig_A 21 VHRLHVGDAREVLASFPEASVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVFRLLVPGGRLVIVVGDV 100 (297)
T ss_dssp CEEEEESCHHHHHTTSCTTCEEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCE
T ss_pred CCEEEECcHHHHHhhCCCCceeEEEECCCCCCccccCCChhhhcccccHHHHHHHHHHHHHHHHHHcCCCcEEEEEECCC
Confidence 57889999776 22 45678999998632210 112356788999999999998875321
Q ss_pred ---------------HHHHHHHHHHCCCceEEEEEe
Q psy1420 208 ---------------HEEFKSMIESAGFQYVTYENL 228 (241)
Q Consensus 208 ---------------~~~~~~~l~~~Gf~~~~~~~~ 228 (241)
+..+..+++++||......-|
T Consensus 101 ~~~~~~~g~~~~~~~~~~l~~~~~~~Gf~~~~~iiW 136 (297)
T 2zig_A 101 AVARRRFGRHLVFPLHADIQVRCRKLGFDNLNPIIW 136 (297)
T ss_dssp EEECC----EEEECHHHHHHHHHHHTTCEEEEEEEE
T ss_pred ccccccCCcccccccHHHHHHHHHHcCCeeeccEEE
Confidence 146888999999987765544
No 302
>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=94.71 E-value=0.0084 Score=47.49 Aligned_cols=39 Identities=13% Similarity=0.026 Sum_probs=28.2
Q ss_pred CCCCeEEEEecCCCc-chhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHH
Q psy1420 42 THDTKLLDVAGGTDP-LANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLR 111 (241)
Q Consensus 42 ~~~~~vLdvG~G~G~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~ 111 (241)
.++.+|||+|||.|. ++ ..+. +..+..++++|+++..++
T Consensus 34 ~~~~rVlEVG~G~g~~vA-------------~~La------------------~~~g~~V~atDInp~Av~ 73 (153)
T 2k4m_A 34 GPGTRVVEVGAGRFLYVS-------------DYIR------------------KHSKVDLVLTDIKPSHGG 73 (153)
T ss_dssp CSSSEEEEETCTTCCHHH-------------HHHH------------------HHSCCEEEEECSSCSSTT
T ss_pred CCCCcEEEEccCCChHHH-------------HHHH------------------HhCCCeEEEEECCccccc
Confidence 345799999999995 65 2221 124567999999998776
No 303
>3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A*
Probab=94.21 E-value=0.16 Score=43.47 Aligned_cols=75 Identities=11% Similarity=0.088 Sum_probs=54.8
Q ss_pred CCeeEEecccCCC-C-----CCCCceeEEeeeehhhccccHHHHHHHHHHhccCCcEEEEEecCH-------HHHHHHHH
Q psy1420 150 PRLRFLEANAEEL-P-----IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH-------EEFKSMIE 216 (241)
Q Consensus 150 ~~~~~~~~d~~~~-~-----~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~-------~~~~~~l~ 216 (241)
++++++.+++.+. | .+..++|++..-... -......++.+...|+|||++++-++.. +.+.+.+.
T Consensus 158 ~~i~li~G~~~dTL~~~l~~~~~~~~dlv~ID~D~--Y~~t~~~le~~~p~l~~GGvIv~DD~~~~~w~G~~~A~~ef~~ 235 (257)
T 3tos_A 158 QRSVLVEGDVRETVPRYLAENPQTVIALAYFDLDL--YEPTKAVLEAIRPYLTKGSIVAFDELDNPKWPGENIAMRKVLG 235 (257)
T ss_dssp CSEEEEESCHHHHHHHHHHHCTTCCEEEEEECCCC--HHHHHHHHHHHGGGEEEEEEEEESSTTCTTCTHHHHHHHHHTC
T ss_pred CcEEEEEecHHHHHHHHHHhCCCCceEEEEEcCcc--cchHHHHHHHHHHHhCCCcEEEEcCCCCCCChHHHHHHHHHHh
Confidence 6899999998764 2 234579999876542 2344567889999999999999977632 77788888
Q ss_pred HCCCceEEEE
Q psy1420 217 SAGFQYVTYE 226 (241)
Q Consensus 217 ~~Gf~~~~~~ 226 (241)
+.|.++...-
T Consensus 236 ~~~~~i~~~p 245 (257)
T 3tos_A 236 LDHAPLRLLP 245 (257)
T ss_dssp TTSSCCEECT
T ss_pred hCCCeEEEcc
Confidence 8887755443
No 304
>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*
Probab=94.15 E-value=0.13 Score=49.57 Aligned_cols=75 Identities=16% Similarity=0.263 Sum_probs=50.2
Q ss_pred CeeEEecccCCC-C-CC---CCceeEEeeeehhhcc-cc--HHHHHHHHHHhccCCcEEEEEecCHHHHHHHHHHCCCce
Q psy1420 151 RLRFLEANAEEL-P-IE---SDSYSAYTIAFGIRNV-TR--IDKALSEAYRVLKPGGRFLCLEFSHEEFKSMIESAGFQY 222 (241)
Q Consensus 151 ~~~~~~~d~~~~-~-~~---~~~~D~V~~~~~l~~~-~~--~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~l~~~Gf~~ 222 (241)
.+++..+|+.+. + .. ...+|+++.-..--.- ++ -..++..+.++++|||.+.- -.....++..+.++||.+
T Consensus 149 ~l~l~~gd~~~~l~~~~~~~~~~~da~flD~f~p~~np~~w~~~~~~~l~~~~~~g~~~~t-~~~~~~vr~~l~~aGf~~ 227 (689)
T 3pvc_A 149 TLDLWFGDVNTLLPTLDDSLNNQVDAWFLDGFAPAKNPDMWNEQLFNAMARMTRPGGTFST-FTAAGFVRRGLQQAGFNV 227 (689)
T ss_dssp EEEEEESCHHHHGGGCCGGGTTCEEEEEECSSCC--CCTTCSHHHHHHHHHHEEEEEEEEE-SCCCHHHHHHHHHTTCEE
T ss_pred EEEEEccCHHHHHhhcccccCCceeEEEECCCCCCCChhhhhHHHHHHHHHHhCCCCEEEe-ccCcHHHHHHHHhCCeEE
Confidence 477888887542 2 11 3679999863211110 11 15788999999999998753 223378999999999987
Q ss_pred EEEE
Q psy1420 223 VTYE 226 (241)
Q Consensus 223 ~~~~ 226 (241)
.+..
T Consensus 228 ~~~~ 231 (689)
T 3pvc_A 228 TKVK 231 (689)
T ss_dssp EEEE
T ss_pred Eecc
Confidence 7655
No 305
>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11
Probab=94.12 E-value=0.054 Score=45.99 Aligned_cols=53 Identities=11% Similarity=0.020 Sum_probs=41.1
Q ss_pred HHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHH
Q psy1420 33 DIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRF 112 (241)
Q Consensus 33 ~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~ 112 (241)
+.+++... .++..|||..||+|.++ ..... .+..++++|+++..++.
T Consensus 203 ~~~i~~~~-~~~~~vlD~f~GsGtt~-------------~~a~~-------------------~gr~~ig~e~~~~~~~~ 249 (260)
T 1g60_A 203 ERIIRASS-NPNDLVLDCFMGSGTTA-------------IVAKK-------------------LGRNFIGCDMNAEYVNQ 249 (260)
T ss_dssp HHHHHHHC-CTTCEEEESSCTTCHHH-------------HHHHH-------------------TTCEEEEEESCHHHHHH
T ss_pred HHHHHHhC-CCCCEEEECCCCCCHHH-------------HHHHH-------------------cCCeEEEEeCCHHHHHH
Confidence 33444433 67889999999999988 43333 46789999999999999
Q ss_pred HHHHHh
Q psy1420 113 LEANAE 118 (241)
Q Consensus 113 ~~~~~~ 118 (241)
+.+++.
T Consensus 250 ~~~r~~ 255 (260)
T 1g60_A 250 ANFVLN 255 (260)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998887
No 306
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24
Probab=93.49 E-value=0.11 Score=46.50 Aligned_cols=56 Identities=18% Similarity=0.183 Sum_probs=40.0
Q ss_pred HHHHHhhcCCC------CCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecC
Q psy1420 32 KDIFIDRLGPT------HDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDI 105 (241)
Q Consensus 32 ~~~~~~~l~~~------~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~ 105 (241)
.+.+.+.++.. ++..|||+|.|.|.++ ..++. .. ...+++++|+
T Consensus 41 ~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT-------------~~Ll~----~~-------------~~~~vvavE~ 90 (353)
T 1i4w_A 41 YNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQS-------------AIFYN----KY-------------CPRQYSLLEK 90 (353)
T ss_dssp HHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHH-------------HHHHH----HH-------------CCSEEEEECC
T ss_pred HHHHHHhccCCcccCcCCCCEEEEECCCCCHHH-------------HHHHh----hC-------------CCCEEEEEec
Confidence 44555555543 3578999999999999 55554 00 1357999999
Q ss_pred ChHhHHHHHHHH
Q psy1420 106 PNPRLRFLEANA 117 (241)
Q Consensus 106 s~~~~~~~~~~~ 117 (241)
++.++...+...
T Consensus 91 D~~l~~~L~~~~ 102 (353)
T 1i4w_A 91 RSSLYKFLNAKF 102 (353)
T ss_dssp CHHHHHHHHHHT
T ss_pred CHHHHHHHHHhc
Confidence 999998887654
No 307
>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*
Probab=93.48 E-value=0.21 Score=47.89 Aligned_cols=75 Identities=16% Similarity=0.238 Sum_probs=49.5
Q ss_pred CeeEEecccCCC-C-CC---CCceeEEeeee-hhhcccc--HHHHHHHHHHhccCCcEEEEEecCHHHHHHHHHHCCCce
Q psy1420 151 RLRFLEANAEEL-P-IE---SDSYSAYTIAF-GIRNVTR--IDKALSEAYRVLKPGGRFLCLEFSHEEFKSMIESAGFQY 222 (241)
Q Consensus 151 ~~~~~~~d~~~~-~-~~---~~~~D~V~~~~-~l~~~~~--~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~l~~~Gf~~ 222 (241)
.+++..+|+.+. + .. ...+|+++.-. .-..-++ -..++..+.++++|||.+.- -.....++..+.++||.+
T Consensus 157 ~l~l~~gd~~~~l~~~~~~~~~~~d~~~~D~f~p~~np~~w~~~~~~~l~~~~~~g~~~~t-~~~~~~vr~~L~~aGf~v 235 (676)
T 3ps9_A 157 TLDLWFGDINELTSQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLAT-FTSAGFVRRGLQDAGFTM 235 (676)
T ss_dssp EEEEEESCHHHHGGGBCGGGTTCEEEEEECCSCGGGCGGGSCHHHHHHHHHHEEEEEEEEE-SCCCHHHHHHHHHHTCEE
T ss_pred EEEEecCCHHHHHHhcccccCCcccEEEECCCCCcCChhhhhHHHHHHHHHHhCCCCEEEe-ccCcHHHHHHHHhCCeEE
Confidence 366777776542 2 11 35799998632 1111122 15789999999999998763 223378999999999987
Q ss_pred EEEE
Q psy1420 223 VTYE 226 (241)
Q Consensus 223 ~~~~ 226 (241)
.+..
T Consensus 236 ~~~~ 239 (676)
T 3ps9_A 236 QKRK 239 (676)
T ss_dssp EEEE
T ss_pred Eecc
Confidence 7644
No 308
>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11
Probab=92.54 E-value=0.29 Score=42.90 Aligned_cols=79 Identities=18% Similarity=0.102 Sum_probs=53.7
Q ss_pred CCeeEEecccCC-CC-CCCCceeEEeeeehhh--------------ccccHHHHHHHHHHhccCCcEEEEEecC------
Q psy1420 150 PRLRFLEANAEE-LP-IESDSYSAYTIAFGIR--------------NVTRIDKALSEAYRVLKPGGRFLCLEFS------ 207 (241)
Q Consensus 150 ~~~~~~~~d~~~-~~-~~~~~~D~V~~~~~l~--------------~~~~~~~~l~~~~~~LkpgG~l~i~~~~------ 207 (241)
.+..++++|..+ ++ ++++++|+|++.--.. +.......+.+++++|+|||.+++..-.
T Consensus 13 ~~~~ii~gD~~~~l~~l~~~svDlI~tDPPY~~~~~~~y~~~~~~~~~~~l~~~l~~~~rvLk~~G~i~i~~~d~~~~g~ 92 (323)
T 1boo_A 13 SNGSMYIGDSLELLESFPEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDFGGAYMKGV 92 (323)
T ss_dssp SSEEEEESCHHHHGGGSCSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCCEETTE
T ss_pred CCceEEeCcHHHHHhhCCCCCeeEEEECCCCCCCcccccCCcCHHHHHHHHHHHHHHHHHHCcCCcEEEEEECCEecCCC
Confidence 356788888654 33 4567899999862221 1224678899999999999999885221
Q ss_pred -------HHHHHHHHHHCCCceEEEEEe
Q psy1420 208 -------HEEFKSMIESAGFQYVTYENL 228 (241)
Q Consensus 208 -------~~~~~~~l~~~Gf~~~~~~~~ 228 (241)
...+.++++..||.......|
T Consensus 93 ~~~~~~~~~~i~~~~~~~Gf~~~~~iiW 120 (323)
T 1boo_A 93 PARSIYNFRVLIRMIDEVGFFLAEDFYW 120 (323)
T ss_dssp EEECCHHHHHHHHHHHTTCCEEEEEEEE
T ss_pred cccccchHHHHHHHHHhCCCEEEEEEEE
Confidence 134556678999987765544
No 309
>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}
Probab=91.99 E-value=0.84 Score=40.95 Aligned_cols=43 Identities=12% Similarity=0.134 Sum_probs=31.4
Q ss_pred CeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHh
Q psy1420 45 TKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAE 118 (241)
Q Consensus 45 ~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~ 118 (241)
.+++|+-||.|..+ ..+.. .....+.++|+++.+.+..+.+..
T Consensus 3 ~~vidLFsG~GGls-------------lG~~~------------------aG~~~v~avE~d~~a~~t~~~N~~ 45 (376)
T 3g7u_A 3 LNVIDLFSGVGGLS-------------LGAAR------------------AGFDVKMAVEIDQHAINTHAINFP 45 (376)
T ss_dssp CEEEEETCTTSHHH-------------HHHHH------------------HTCEEEEEECSCHHHHHHHHHHCT
T ss_pred CeEEEEccCcCHHH-------------HHHHH------------------CCCcEEEEEeCCHHHHHHHHHhCC
Confidence 58999999999988 33322 123347799999999888877653
No 310
>2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A*
Probab=90.82 E-value=2.9 Score=36.36 Aligned_cols=106 Identities=14% Similarity=0.114 Sum_probs=67.7
Q ss_pred CeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCCcc
Q psy1420 45 TKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIES 124 (241)
Q Consensus 45 ~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~ 124 (241)
..|+++|||--.-. .++.. .....++-+| -|..++..++.+.+..
T Consensus 104 ~QvV~LGaGlDTra-------------~Rl~~------------------~~~~~v~evD-~P~vi~~k~~lL~~~~--- 148 (310)
T 2uyo_A 104 RQFVILASGLDSRA-------------YRLDW------------------PTGTTVYEID-QPKVLAYKSTTLAEHG--- 148 (310)
T ss_dssp CEEEEETCTTCCHH-------------HHSCC------------------CTTCEEEEEE-CHHHHHHHHHHHHHTT---
T ss_pred CeEEEeCCCCCchh-------------hhccC------------------CCCcEEEEcC-CHHHHHHHHHHHHhcC---
Confidence 47999999987765 33321 0245788888 4788877777765210
Q ss_pred ccccccceecceeeeeeccccCCCCCCeeEEecccCCCC---------CCCCceeEEeeeehhhcccc--HHHHHHHHHH
Q psy1420 125 DSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELP---------IESDSYSAYTIAFGIRNVTR--IDKALSEAYR 193 (241)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~---------~~~~~~D~V~~~~~l~~~~~--~~~~l~~~~~ 193 (241)
..++++..++.+|+.. . +..+..-++++-.+++++++ ...+++.+..
T Consensus 149 ---------------------~~~~~~~~~v~~Dl~d-~~~~~l~~~g~d~~~Pt~~i~Egvl~Yl~~~~~~~ll~~l~~ 206 (310)
T 2uyo_A 149 ---------------------VTPTADRREVPIDLRQ-DWPPALRSAGFDPSARTAWLAEGLLMYLPATAQDGLFTEIGG 206 (310)
T ss_dssp ---------------------CCCSSEEEEEECCTTS-CHHHHHHHTTCCTTSCEEEEECSCGGGSCHHHHHHHHHHHHH
T ss_pred ---------------------CCCCCCeEEEecchHh-hHHHHHHhccCCCCCCEEEEEechHhhCCHHHHHHHHHHHHH
Confidence 0122467777787765 2 11223345666677777754 4578888888
Q ss_pred hccCCcEEEEEecC
Q psy1420 194 VLKPGGRFLCLEFS 207 (241)
Q Consensus 194 ~LkpgG~l~i~~~~ 207 (241)
.+.||+.+++....
T Consensus 207 ~~~~gs~l~~d~~~ 220 (310)
T 2uyo_A 207 LSAVGSRIAVETSP 220 (310)
T ss_dssp TCCTTCEEEEECCC
T ss_pred hCCCCeEEEEEecC
Confidence 88899888876443
No 311
>1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A
Probab=90.62 E-value=0.76 Score=40.60 Aligned_cols=126 Identities=9% Similarity=0.071 Sum_probs=68.2
Q ss_pred CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCC
Q psy1420 42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP 121 (241)
Q Consensus 42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~ 121 (241)
.+...|+.+|||..... .++.. ......++-+|. |..++.-++.+.+.+
T Consensus 96 ~~~~qVV~LGaGlDTr~-------------~RL~~-----------------~~~~~~~~EvD~-P~vi~~K~~~l~~~~ 144 (334)
T 1rjd_A 96 NEKVQVVNLGCGSDLRM-------------LPLLQ-----------------MFPHLAYVDIDY-NESVELKNSILRESE 144 (334)
T ss_dssp CSSEEEEEETCTTCCTH-------------HHHHH-----------------HCTTEEEEEEEC-HHHHHHHHHHHHHSH
T ss_pred CCCcEEEEeCCCCccHH-------------HHhcC-----------------cCCCCEEEECCC-HHHHHHHHHHhhhcc
Confidence 45678999999999877 44432 012446777777 666666555554221
Q ss_pred CccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCC---------CCCceeEEeeeehhhcccc--HHHHHHH
Q psy1420 122 IESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPI---------ESDSYSAYTIAFGIRNVTR--IDKALSE 190 (241)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~---------~~~~~D~V~~~~~l~~~~~--~~~~l~~ 190 (241)
............... ....+.+++..++.+|+.+... ..+...++++-.++.+++. ....++.
T Consensus 145 ~l~~~l~~~~~~~~~------~~~~~~~~~~~~v~~DL~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~~~~~~~ll~~ 218 (334)
T 1rjd_A 145 ILRISLGLSKEDTAK------SPFLIDQGRYKLAACDLNDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINT 218 (334)
T ss_dssp HHHHHHTCCSSCCCC------TTEEEECSSEEEEECCTTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHH
T ss_pred chhhhcccccccccc------cccccCCCceEEEecCCCCcHHHHHHHHhcCCCCCCEEEEEcchhhCCCHHHHHHHHHH
Confidence 000000000000000 0000112467788888776321 2245677777777777654 4577787
Q ss_pred HHHhccCCcEEEEEe
Q psy1420 191 AYRVLKPGGRFLCLE 205 (241)
Q Consensus 191 ~~~~LkpgG~l~i~~ 205 (241)
+.+.. |+|.+++.+
T Consensus 219 ia~~~-~~~~~v~~e 232 (334)
T 1rjd_A 219 IMSKF-SHGLWISYD 232 (334)
T ss_dssp HHHHC-SSEEEEEEE
T ss_pred HHhhC-CCcEEEEEe
Confidence 87776 778776554
No 312
>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11
Probab=90.30 E-value=0.44 Score=40.24 Aligned_cols=76 Identities=12% Similarity=0.155 Sum_probs=48.2
Q ss_pred eEEecccCCC--CCCCCceeEEeeeehh--h------------ccccHHHHHHHHHHhccCCcEEEEEe--cCHHHHHHH
Q psy1420 153 RFLEANAEEL--PIESDSYSAYTIAFGI--R------------NVTRIDKALSEAYRVLKPGGRFLCLE--FSHEEFKSM 214 (241)
Q Consensus 153 ~~~~~d~~~~--~~~~~~~D~V~~~~~l--~------------~~~~~~~~l~~~~~~LkpgG~l~i~~--~~~~~~~~~ 214 (241)
+++++|.... ..+++++|+|++.--. . +..-....++++.++|+|||.+++.. +....+..+
T Consensus 6 ~l~~gD~~~~l~~l~~~~vdlI~~DPPY~~~~~~~d~~~~~~~y~~~~~~~l~~~~~~Lk~~g~i~v~~~d~~~~~~~~~ 85 (260)
T 1g60_A 6 KIHQMNCFDFLDQVENKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIFNTPFNCAFICQY 85 (260)
T ss_dssp SEEECCHHHHHHHSCTTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEEECHHHHHHHHHH
T ss_pred eEEechHHHHHHhccccccCEEEECCCCCCCcccccccCCHHHHHHHHHHHHHHHHHHhcCCeEEEEEcCcHHHHHHHHH
Confidence 4566665331 1335678888865211 1 01234578888999999999988763 112455667
Q ss_pred HHHCCCceEEEEEe
Q psy1420 215 IESAGFQYVTYENL 228 (241)
Q Consensus 215 l~~~Gf~~~~~~~~ 228 (241)
+.+.||.......|
T Consensus 86 ~~~~gf~~~~~iiW 99 (260)
T 1g60_A 86 LVSKGMIFQNWITW 99 (260)
T ss_dssp HHHTTCEEEEEEEE
T ss_pred HHhhccceeEEEEE
Confidence 88999987765555
No 313
>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59
Probab=90.07 E-value=0.42 Score=41.47 Aligned_cols=122 Identities=11% Similarity=0.023 Sum_probs=81.9
Q ss_pred CCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHhcCCCc
Q psy1420 44 DTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIE 123 (241)
Q Consensus 44 ~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~ 123 (241)
+..+||+=+|+|..+ ...+. ...+++.+|.++...+..++++.
T Consensus 92 ~~~~LDlfaGSGaLg-------------iEaLS-------------------~~d~~vfvE~~~~a~~~L~~Nl~----- 134 (283)
T 2oo3_A 92 LNSTLSYYPGSPYFA-------------INQLR-------------------SQDRLYLCELHPTEYNFLLKLPH----- 134 (283)
T ss_dssp SSSSCCEEECHHHHH-------------HHHSC-------------------TTSEEEEECCSHHHHHHHTTSCC-----
T ss_pred CCCceeEeCCcHHHH-------------HHHcC-------------------CCCeEEEEeCCHHHHHHHHHHhC-----
Confidence 457899999999988 55444 35789999999999999887776
Q ss_pred cccccccceecceeeeeeccccCCCCCCeeEEecccCC-CC---CCCCceeEEeeeehhhccccHHHHHHHHHH--hccC
Q psy1420 124 SDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEE-LP---IESDSYSAYTIAFGIRNVTRIDKALSEAYR--VLKP 197 (241)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~---~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~--~Lkp 197 (241)
. .+++++++.|... +. .+..+||+|++-=....-.+..+.++.+.+ .+.|
T Consensus 135 --------------------~----~~~~~V~~~D~~~~L~~l~~~~~~fdLVfiDPPYe~k~~~~~vl~~L~~~~~r~~ 190 (283)
T 2oo3_A 135 --------------------F----NKKVYVNHTDGVSKLNALLPPPEKRGLIFIDPSYERKEEYKEIPYAIKNAYSKFS 190 (283)
T ss_dssp --------------------T----TSCEEEECSCHHHHHHHHCSCTTSCEEEEECCCCCSTTHHHHHHHHHHHHHHHCT
T ss_pred --------------------c----CCcEEEEeCcHHHHHHHhcCCCCCccEEEECCCCCCCcHHHHHHHHHHHhCccCC
Confidence 2 1468888888543 21 223579999975444323355666666655 4568
Q ss_pred CcEEEEEec--CH---HHHHHHHHHCCCceEEEE
Q psy1420 198 GGRFLCLEF--SH---EEFKSMIESAGFQYVTYE 226 (241)
Q Consensus 198 gG~l~i~~~--~~---~~~~~~l~~~Gf~~~~~~ 226 (241)
+|.+++.=. .. +.+.+-+++.|..+...+
T Consensus 191 ~Gi~v~WYPi~~~~~~~~~~~~l~~~~~~~l~~e 224 (283)
T 2oo3_A 191 TGLYCVWYPVVNKAWTEQFLRKMREISSKSVRIE 224 (283)
T ss_dssp TSEEEEEEEESSHHHHHHHHHHHHHHCSSEEEEE
T ss_pred CeEEEEEEeccchHHHHHHHHHHHhcCCCeEEEE
Confidence 999887522 22 566666666676554443
No 314
>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1
Probab=88.89 E-value=0.76 Score=40.48 Aligned_cols=32 Identities=13% Similarity=0.066 Sum_probs=24.2
Q ss_pred ceeEEeeeehhhccccHHHHHHHHHHhccCCcEEEEEe
Q psy1420 168 SYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 205 (241)
Q Consensus 168 ~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 205 (241)
.+|+|+.+.+- ...++.+.+.|+|+|++++..
T Consensus 258 g~D~vid~~g~------~~~~~~~~~~l~~~G~iv~~G 289 (371)
T 1f8f_A 258 GVNFALESTGS------PEILKQGVDALGILGKIAVVG 289 (371)
T ss_dssp CEEEEEECSCC------HHHHHHHHHTEEEEEEEEECC
T ss_pred CCcEEEECCCC------HHHHHHHHHHHhcCCEEEEeC
Confidence 69999865432 246788889999999988753
No 315
>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26
Probab=88.01 E-value=0.94 Score=39.97 Aligned_cols=46 Identities=13% Similarity=0.117 Sum_probs=32.9
Q ss_pred CCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHh
Q psy1420 44 DTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAE 118 (241)
Q Consensus 44 ~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~ 118 (241)
..+++|+-||.|..+ ..+.. ++. ....+.++|+++.+++..+.+..
T Consensus 2 ~~~v~dLFaG~Gg~~-------------~g~~~------~G~----------~~~~v~~~E~d~~a~~~~~~N~~ 47 (343)
T 1g55_A 2 PLRVLELYSGVGGMH-------------HALRE------SCI----------PAQVVAAIDVNTVANEVYKYNFP 47 (343)
T ss_dssp CEEEEEETCTTCHHH-------------HHHHH------HTC----------SEEEEEEECCCHHHHHHHHHHCT
T ss_pred CCeEEEeCcCccHHH-------------HHHHH------CCC----------CceEEEEEeCCHHHHHHHHHhcc
Confidence 358999999999988 33322 000 02358999999999999888765
No 316
>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1
Probab=87.83 E-value=1.1 Score=39.89 Aligned_cols=39 Identities=13% Similarity=0.085 Sum_probs=28.3
Q ss_pred CceeEEeeeehhh---------ccccHHHHHHHHHHhccCCcEEEEEe
Q psy1420 167 DSYSAYTIAFGIR---------NVTRIDKALSEAYRVLKPGGRFLCLE 205 (241)
Q Consensus 167 ~~~D~V~~~~~l~---------~~~~~~~~l~~~~~~LkpgG~l~i~~ 205 (241)
..+|+|+.+-+-. +.+++...++.+.++|+++|++++..
T Consensus 253 ~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~G 300 (398)
T 1kol_A 253 PEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPG 300 (398)
T ss_dssp SCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECS
T ss_pred CCCCEEEECCCCcccccccccccccchHHHHHHHHHHHhcCCEEEEec
Confidence 3689998765432 23445567888999999999987653
No 317
>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}
Probab=87.17 E-value=1 Score=40.17 Aligned_cols=38 Identities=18% Similarity=0.204 Sum_probs=26.0
Q ss_pred ceeEEeeeehhhcc--------ccHHHHHHHHHHhccCCcEEEEEe
Q psy1420 168 SYSAYTIAFGIRNV--------TRIDKALSEAYRVLKPGGRFLCLE 205 (241)
Q Consensus 168 ~~D~V~~~~~l~~~--------~~~~~~l~~~~~~LkpgG~l~i~~ 205 (241)
.+|+|+.+-+-... .++...++.+.++|+|+|++++..
T Consensus 254 g~Dvvid~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~gG~iv~~G 299 (398)
T 2dph_A 254 EVDCGVDAVGFEAHGLGDEANTETPNGALNSLFDVVRAGGAIGIPG 299 (398)
T ss_dssp CEEEEEECSCTTCBCSGGGTTSBCTTHHHHHHHHHEEEEEEEECCS
T ss_pred CCCEEEECCCCccccccccccccccHHHHHHHHHHHhcCCEEEEec
Confidence 69999876543211 113356888899999999987643
No 318
>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A
Probab=86.25 E-value=1.7 Score=37.92 Aligned_cols=32 Identities=22% Similarity=0.297 Sum_probs=23.6
Q ss_pred CceeEEeeeehhhccccHHHHHHHHHHhccCCcEEEEE
Q psy1420 167 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCL 204 (241)
Q Consensus 167 ~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~ 204 (241)
..+|+|+.+.+- ...++.+.+.|+|+|++++.
T Consensus 234 ~g~D~v~d~~g~------~~~~~~~~~~l~~~G~~v~~ 265 (352)
T 3fpc_A 234 KGVDKVVIAGGD------VHTFAQAVKMIKPGSDIGNV 265 (352)
T ss_dssp CCEEEEEECSSC------TTHHHHHHHHEEEEEEEEEC
T ss_pred CCCCEEEECCCC------hHHHHHHHHHHhcCCEEEEe
Confidence 469999864432 13577788899999998864
No 319
>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}
Probab=86.20 E-value=0.82 Score=39.91 Aligned_cols=95 Identities=9% Similarity=0.046 Sum_probs=57.4
Q ss_pred hhcCCCCCCeEEEEecCC-CcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHH
Q psy1420 37 DRLGPTHDTKLLDVAGGT-DPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEA 115 (241)
Q Consensus 37 ~~l~~~~~~~vLdvG~G~-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~ 115 (241)
.....+++.+||-.|+|. |..+ .+++.. ...++++++.++...+.+++
T Consensus 170 ~~~~~~~g~~VlV~GaG~vG~~a-------------~qla~~------------------~Ga~Vi~~~~~~~~~~~~~~ 218 (348)
T 3two_A 170 KFSKVTKGTKVGVAGFGGLGSMA-------------VKYAVA------------------MGAEVSVFARNEHKKQDALS 218 (348)
T ss_dssp HHTTCCTTCEEEEESCSHHHHHH-------------HHHHHH------------------TTCEEEEECSSSTTHHHHHH
T ss_pred HhcCCCCCCEEEEECCcHHHHHH-------------HHHHHH------------------CCCeEEEEeCCHHHHHHHHh
Confidence 344678899999998642 2222 333331 34579999999988887764
Q ss_pred HHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHHHHHHhc
Q psy1420 116 NAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVL 195 (241)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~L 195 (241)
. +.. .++ .+.... ...+|+|+.+.+-. ..++.+.+.|
T Consensus 219 l-----------------------------Ga~----~v~-~~~~~~---~~~~D~vid~~g~~------~~~~~~~~~l 255 (348)
T 3two_A 219 M-----------------------------GVK----HFY-TDPKQC---KEELDFIISTIPTH------YDLKDYLKLL 255 (348)
T ss_dssp T-----------------------------TCS----EEE-SSGGGC---CSCEEEEEECCCSC------CCHHHHHTTE
T ss_pred c-----------------------------CCC----eec-CCHHHH---hcCCCEEEECCCcH------HHHHHHHHHH
Confidence 2 111 122 222222 12799998654322 2466677899
Q ss_pred cCCcEEEEEe
Q psy1420 196 KPGGRFLCLE 205 (241)
Q Consensus 196 kpgG~l~i~~ 205 (241)
+|+|++++..
T Consensus 256 ~~~G~iv~~G 265 (348)
T 3two_A 256 TYNGDLALVG 265 (348)
T ss_dssp EEEEEEEECC
T ss_pred hcCCEEEEEC
Confidence 9999988753
No 320
>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*
Probab=85.62 E-value=0.93 Score=40.08 Aligned_cols=33 Identities=18% Similarity=0.341 Sum_probs=24.8
Q ss_pred CceeEEeeeehhhccccHHHHHHHHHHhccCCcEEEEEe
Q psy1420 167 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 205 (241)
Q Consensus 167 ~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 205 (241)
+.+|+|+.+.+- ...++.+.++|++||++++..
T Consensus 252 gg~Dvvid~~G~------~~~~~~~~~~l~~~G~vv~~G 284 (370)
T 4ej6_A 252 GGVDVVIECAGV------AETVKQSTRLAKAGGTVVILG 284 (370)
T ss_dssp TCEEEEEECSCC------HHHHHHHHHHEEEEEEEEECS
T ss_pred CCCCEEEECCCC------HHHHHHHHHHhccCCEEEEEe
Confidence 479999965432 246788889999999998753
No 321
>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica}
Probab=85.50 E-value=4.4 Score=35.50 Aligned_cols=47 Identities=11% Similarity=0.059 Sum_probs=32.6
Q ss_pred CCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCc-eeecCChHhHHHHHHHHh
Q psy1420 43 HDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFP-NQIDIPNPRLRFLEANAE 118 (241)
Q Consensus 43 ~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~D~s~~~~~~~~~~~~ 118 (241)
...+++|+-||.|..+ ..+.. ++- ....+ .++|+++.+.+..+.+..
T Consensus 9 ~~~~vidLFaG~GG~~-------------~G~~~------aG~----------~~~~v~~a~e~d~~a~~ty~~N~~ 56 (327)
T 3qv2_A 9 KQVNVIEFFSGIGGLR-------------SSYER------SSI----------NINATFIPFDINEIANKIYSKNFK 56 (327)
T ss_dssp CCEEEEEETCTTTHHH-------------HHHHH------SSC----------CCCEEEEEECCCHHHHHHHHHHHC
T ss_pred CCCEEEEECCChhHHH-------------HHHHH------cCC----------CceEEEEEEECCHHHHHHHHHHCC
Confidence 4568999999999987 32222 000 01345 699999999988887765
No 322
>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}
Probab=85.48 E-value=3 Score=36.36 Aligned_cols=34 Identities=15% Similarity=0.256 Sum_probs=24.9
Q ss_pred CCceeEEeeeehhhccccHHHHHHHHHHhccCCcEEEEEe
Q psy1420 166 SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 205 (241)
Q Consensus 166 ~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 205 (241)
...+|+|+.+.+- ...++.+.++|+++|++++..
T Consensus 250 g~g~Dvvid~~g~------~~~~~~~~~~l~~~G~iv~~G 283 (363)
T 3m6i_A 250 GIEPAVALECTGV------ESSIAAAIWAVKFGGKVFVIG 283 (363)
T ss_dssp SCCCSEEEECSCC------HHHHHHHHHHSCTTCEEEECC
T ss_pred CCCCCEEEECCCC------hHHHHHHHHHhcCCCEEEEEc
Confidence 3478999865432 235778889999999998753
No 323
>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...
Probab=85.31 E-value=5.6 Score=34.75 Aligned_cols=45 Identities=9% Similarity=0.055 Sum_probs=33.7
Q ss_pred CCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHh
Q psy1420 43 HDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAE 118 (241)
Q Consensus 43 ~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~ 118 (241)
.+.+++|+-||.|..+ ..+.. .....+.++|+++.+.+..+.+..
T Consensus 10 ~~~~~~dLFaG~Gg~~-------------~g~~~------------------aG~~~v~~~e~d~~a~~t~~~N~~ 54 (327)
T 2c7p_A 10 TGLRFIDLFAGLGGFR-------------LALES------------------CGAECVYSNEWDKYAQEVYEMNFG 54 (327)
T ss_dssp TTCEEEEETCTTTHHH-------------HHHHH------------------TTCEEEEEECCCHHHHHHHHHHHS
T ss_pred CCCcEEEECCCcCHHH-------------HHHHH------------------CCCeEEEEEeCCHHHHHHHHHHcC
Confidence 3568999999999988 33322 023458899999999999888765
No 324
>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A
Probab=83.32 E-value=1.8 Score=37.81 Aligned_cols=77 Identities=14% Similarity=0.067 Sum_probs=50.1
Q ss_pred eeEE-ecccCCC--CCCCCceeEEeeeehh--h---------ccccHHHHHHHHHHhccCCcEEEEEecCH---------
Q psy1420 152 LRFL-EANAEEL--PIESDSYSAYTIAFGI--R---------NVTRIDKALSEAYRVLKPGGRFLCLEFSH--------- 208 (241)
Q Consensus 152 ~~~~-~~d~~~~--~~~~~~~D~V~~~~~l--~---------~~~~~~~~l~~~~~~LkpgG~l~i~~~~~--------- 208 (241)
..++ ++|.... .++++++|+|++.--. . +.......+.++.++|+|||.+++..-..
T Consensus 39 ~~l~i~gD~l~~L~~l~~~svDlI~tDPPY~~~~d~~~~~~~~~~~~~~~l~~~~rvLk~~G~i~i~~~~~~~~~~~~~~ 118 (319)
T 1eg2_A 39 RHVYDVCDCLDTLAKLPDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIFGGLQYQGEAGSGD 118 (319)
T ss_dssp EEEEEECCHHHHHHTSCTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEECSCCCCCTTBCC
T ss_pred ceEEECCcHHHHHHhCccCCcCEEEECCCCCCCCCCccCHHHHHHHHHHHHHHHHHHcCCCeEEEEEcCccccccccccc
Confidence 4566 7886542 2345689999975221 1 12235678889999999999998853221
Q ss_pred -HHHHHHHHHCC-CceEEEEEe
Q psy1420 209 -EEFKSMIESAG-FQYVTYENL 228 (241)
Q Consensus 209 -~~~~~~l~~~G-f~~~~~~~~ 228 (241)
..+...+...| |......-|
T Consensus 119 l~~l~~~i~~~G~~~~~~~IIW 140 (319)
T 1eg2_A 119 LISIISHMRQNSKMLLANLIIW 140 (319)
T ss_dssp HHHHHHHHHHHCCCEEEEEEEE
T ss_pred HHHHHHHHhCcccceeEEEEEE
Confidence 45556667778 887765555
No 325
>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56
Probab=83.16 E-value=1.3 Score=40.10 Aligned_cols=50 Identities=14% Similarity=0.071 Sum_probs=37.6
Q ss_pred CCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHh
Q psy1420 41 PTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAE 118 (241)
Q Consensus 41 ~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~ 118 (241)
.+++..++|+|++.|..+ ..++. .... ...+++++|++|...+.+++++.
T Consensus 224 l~~~~~viDvGAn~G~~s-------------~~~a~----~~~~-----------~~~~V~afEP~p~~~~~L~~n~~ 273 (409)
T 2py6_A 224 FSDSEKMVDCGASIGESL-------------AGLIG----VTKG-----------KFERVWMIEPDRINLQTLQNVLR 273 (409)
T ss_dssp CCSSCEEEEETCTTSHHH-------------HHHHH----HHTS-----------CCSEEEEECCCHHHHHHHHHHHH
T ss_pred cCCCCEEEECCCCcCHHH-------------HHHHH----HhcC-----------CCCEEEEEcCCHHHHHHHHHHHH
Confidence 368889999999999988 33221 0000 23689999999999999999887
No 326
>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*
Probab=81.65 E-value=1.9 Score=37.32 Aligned_cols=32 Identities=19% Similarity=0.175 Sum_probs=23.5
Q ss_pred ceeEEeeeehhhccccHHHHHHHHHHhccCCcEEEEEe
Q psy1420 168 SYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 205 (241)
Q Consensus 168 ~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 205 (241)
.+|.|+...+ -...++.+.+.|+|+|++++..
T Consensus 232 ~~d~vid~~g------~~~~~~~~~~~l~~~G~iv~~G 263 (340)
T 3s2e_A 232 GAHGVLVTAV------SPKAFSQAIGMVRRGGTIALNG 263 (340)
T ss_dssp SEEEEEESSC------CHHHHHHHHHHEEEEEEEEECS
T ss_pred CCCEEEEeCC------CHHHHHHHHHHhccCCEEEEeC
Confidence 6888875432 1346788889999999988753
No 327
>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1
Probab=81.38 E-value=2.9 Score=32.98 Aligned_cols=32 Identities=25% Similarity=0.477 Sum_probs=24.2
Q ss_pred CceeEEeeeehhhccccHHHHHHHHHHhccCCcEEEEEe
Q psy1420 167 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 205 (241)
Q Consensus 167 ~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 205 (241)
..+|+++.+.+ ...++.+.+.|+|+|+++...
T Consensus 106 ~~~D~vi~~~g-------~~~~~~~~~~l~~~G~~v~~g 137 (198)
T 1pqw_A 106 YGVDVVLNSLA-------GEAIQRGVQILAPGGRFIELG 137 (198)
T ss_dssp CCEEEEEECCC-------THHHHHHHHTEEEEEEEEECS
T ss_pred CCCeEEEECCc-------hHHHHHHHHHhccCCEEEEEc
Confidence 36999986543 145778889999999988753
No 328
>1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52
Probab=81.35 E-value=5.2 Score=36.05 Aligned_cols=57 Identities=5% Similarity=-0.022 Sum_probs=35.8
Q ss_pred cCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHh
Q psy1420 39 LGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAE 118 (241)
Q Consensus 39 l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~ 118 (241)
+.......|+|+|.|+|.++ ..++.. +...+.. ....++..+|+|+...+.-++.+.
T Consensus 76 ~g~p~~~~ivElGaG~GtLa-------------~diL~~----l~~~p~~------~~~~~y~iVE~Sp~Lr~~Q~~~L~ 132 (387)
T 1zkd_A 76 ADEPQTLRLIEIGPGRGTMM-------------ADALRA----LRVLPIL------YQSLSVHLVEINPVLRQKQQTLLA 132 (387)
T ss_dssp TTCCSSEEEEEECCTTSHHH-------------HHHHHH----HTTSHHH------HTTEEEEEECCCHHHHHHHHHHST
T ss_pred cCCCCCcEEEEECCCcchHH-------------HHHHHH----HHhCCcc------ccccEEEEEecCHHHHHHHHHHhc
Confidence 34344567999999999988 455442 1111100 023478999999988876555544
No 329
>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}
Probab=80.71 E-value=1.5 Score=38.46 Aligned_cols=32 Identities=16% Similarity=0.244 Sum_probs=23.8
Q ss_pred CceeEEeeeehhhccccHHHHHHHHHHhccCCcEEEEEe
Q psy1420 167 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 205 (241)
Q Consensus 167 ~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 205 (241)
..+|+|+.+.+- ..+..+.+.|+|+|++++..
T Consensus 256 ~g~D~vid~~g~-------~~~~~~~~~l~~~G~iv~~G 287 (363)
T 3uog_A 256 RGADHILEIAGG-------AGLGQSLKAVAPDGRISVIG 287 (363)
T ss_dssp CCEEEEEEETTS-------SCHHHHHHHEEEEEEEEEEC
T ss_pred CCceEEEECCCh-------HHHHHHHHHhhcCCEEEEEe
Confidence 379999976551 24666778999999988763
No 330
>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}
Probab=80.45 E-value=1.7 Score=37.24 Aligned_cols=94 Identities=12% Similarity=0.175 Sum_probs=54.9
Q ss_pred hhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHH
Q psy1420 37 DRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEAN 116 (241)
Q Consensus 37 ~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~ 116 (241)
+....+++.+||-.|+ |... ....+++.. .+.++++++ ++...+.+++.
T Consensus 136 ~~~~~~~g~~VlV~Ga--G~vG----------~~a~qlak~------------------~Ga~Vi~~~-~~~~~~~~~~l 184 (315)
T 3goh_A 136 EKIPLTKQREVLIVGF--GAVN----------NLLTQMLNN------------------AGYVVDLVS-ASLSQALAAKR 184 (315)
T ss_dssp TTSCCCSCCEEEEECC--SHHH----------HHHHHHHHH------------------HTCEEEEEC-SSCCHHHHHHH
T ss_pred hhcCCCCCCEEEEECC--CHHH----------HHHHHHHHH------------------cCCEEEEEE-ChhhHHHHHHc
Confidence 5566788999999998 3333 011333331 345799999 88888877653
Q ss_pred HhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHHHHHHhcc
Q psy1420 117 AEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLK 196 (241)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~Lk 196 (241)
-. ..++. |.+.+ ...+|+|+.+.+-. .+..+.++|+
T Consensus 185 Ga---------------------------------~~v~~-d~~~v---~~g~Dvv~d~~g~~-------~~~~~~~~l~ 220 (315)
T 3goh_A 185 GV---------------------------------RHLYR-EPSQV---TQKYFAIFDAVNSQ-------NAAALVPSLK 220 (315)
T ss_dssp TE---------------------------------EEEES-SGGGC---CSCEEEEECC--------------TTGGGEE
T ss_pred CC---------------------------------CEEEc-CHHHh---CCCccEEEECCCch-------hHHHHHHHhc
Confidence 21 11111 22222 45799998654321 2345678999
Q ss_pred CCcEEEEEe
Q psy1420 197 PGGRFLCLE 205 (241)
Q Consensus 197 pgG~l~i~~ 205 (241)
|+|++++..
T Consensus 221 ~~G~~v~~g 229 (315)
T 3goh_A 221 ANGHIICIQ 229 (315)
T ss_dssp EEEEEEEEC
T ss_pred CCCEEEEEe
Confidence 999988763
No 331
>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11
Probab=79.58 E-value=1 Score=39.34 Aligned_cols=45 Identities=9% Similarity=0.028 Sum_probs=37.6
Q ss_pred CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHh
Q psy1420 42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAE 118 (241)
Q Consensus 42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~ 118 (241)
+++..|||.-||+|+++ ..... .+...+++|+++...+.+..++.
T Consensus 251 ~~~~~VlDpF~GsGtt~-------------~aa~~-------------------~gr~~ig~e~~~~~~~~~~~r~~ 295 (323)
T 1boo_A 251 EPDDLVVDIFGGSNTTG-------------LVAER-------------------ESRKWISFEMKPEYVAASAFRFL 295 (323)
T ss_dssp CTTCEEEETTCTTCHHH-------------HHHHH-------------------TTCEEEEEESCHHHHHHHHGGGS
T ss_pred CCCCEEEECCCCCCHHH-------------HHHHH-------------------cCCCEEEEeCCHHHHHHHHHHHH
Confidence 67889999999999988 33333 46789999999999999998876
No 332
>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1
Probab=78.96 E-value=2.4 Score=37.37 Aligned_cols=33 Identities=15% Similarity=0.186 Sum_probs=22.6
Q ss_pred CceeEEeeeehhhccccHHHHHHHHHHhccCCcEEEEEe
Q psy1420 167 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 205 (241)
Q Consensus 167 ~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 205 (241)
..+|+|+.+.+-. ..++.+.+.|+|+|+++...
T Consensus 256 ~g~Dvvid~~g~~------~~~~~~~~~l~~~G~iv~~G 288 (369)
T 1uuf_A 256 KSFDFILNTVAAP------HNLDDFTTLLKRDGTMTLVG 288 (369)
T ss_dssp TCEEEEEECCSSC------CCHHHHHTTEEEEEEEEECC
T ss_pred cCCCEEEECCCCH------HHHHHHHHHhccCCEEEEec
Confidence 4689998654431 13566778899999987653
No 333
>3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A*
Probab=78.56 E-value=7.6 Score=33.26 Aligned_cols=43 Identities=12% Similarity=0.093 Sum_probs=30.3
Q ss_pred CeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHh
Q psy1420 45 TKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAE 118 (241)
Q Consensus 45 ~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~ 118 (241)
++|+|+=||.|.++ .-+-. ....-+.++|+++.+.+..+.+..
T Consensus 1 mkvidLFsG~GG~~-------------~G~~~------------------aG~~~v~a~e~d~~a~~ty~~N~~ 43 (331)
T 3ubt_Y 1 MNLISLFSGAGGLD-------------LGFQK------------------AGFRIICANEYDKSIWKTYESNHS 43 (331)
T ss_dssp CEEEEESCTTCHHH-------------HHHHH------------------TTCEEEEEEECCTTTHHHHHHHCC
T ss_pred CeEEEeCcCccHHH-------------HHHHH------------------CCCEEEEEEeCCHHHHHHHHHHCC
Confidence 47999999999887 22211 123357799999998888776643
No 334
>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A
Probab=78.53 E-value=2.7 Score=36.70 Aligned_cols=33 Identities=9% Similarity=0.160 Sum_probs=24.0
Q ss_pred CceeEEeeeehhhccccHHHHHHHHHHhccCCcEEEEEe
Q psy1420 167 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 205 (241)
Q Consensus 167 ~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 205 (241)
..+|+|+.+-+- ...++.+.++|+|+|++++..
T Consensus 241 ~g~D~vid~~g~------~~~~~~~~~~l~~~G~iv~~G 273 (356)
T 1pl8_A 241 CKPEVTIECTGA------EASIQAGIYATRSGGTLVLVG 273 (356)
T ss_dssp SCCSEEEECSCC------HHHHHHHHHHSCTTCEEEECS
T ss_pred CCCCEEEECCCC------hHHHHHHHHHhcCCCEEEEEe
Confidence 468999865432 235677889999999988753
No 335
>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}
Probab=78.50 E-value=3.1 Score=36.00 Aligned_cols=51 Identities=16% Similarity=-0.027 Sum_probs=33.5
Q ss_pred HhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHH
Q psy1420 36 IDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEA 115 (241)
Q Consensus 36 ~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~ 115 (241)
.+....+++.+||-.|+|+|--. ...+++. ..+.++++++.++...+.+++
T Consensus 137 ~~~~~~~~g~~VlV~Ga~g~iG~-----------~~~~~a~------------------~~Ga~Vi~~~~~~~~~~~~~~ 187 (340)
T 3gms_A 137 TETLNLQRNDVLLVNACGSAIGH-----------LFAQLSQ------------------ILNFRLIAVTRNNKHTEELLR 187 (340)
T ss_dssp HTTSCCCTTCEEEESSTTSHHHH-----------HHHHHHH------------------HHTCEEEEEESSSTTHHHHHH
T ss_pred HHhcccCCCCEEEEeCCccHHHH-----------HHHHHHH------------------HcCCEEEEEeCCHHHHHHHHh
Confidence 35566788999999998754322 0033332 134579999999888877765
No 336
>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*
Probab=78.40 E-value=6.7 Score=34.23 Aligned_cols=32 Identities=16% Similarity=0.133 Sum_probs=23.6
Q ss_pred CceeEEeeeehhhccccHHHHHHHHHHhccCC-cEEEEE
Q psy1420 167 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPG-GRFLCL 204 (241)
Q Consensus 167 ~~~D~V~~~~~l~~~~~~~~~l~~~~~~Lkpg-G~l~i~ 204 (241)
+.+|+|+.+.+- ...++.+.+.|+|+ |++++.
T Consensus 259 ~g~D~vid~~g~------~~~~~~~~~~l~~~~G~iv~~ 291 (373)
T 2fzw_A 259 GGVDYSFECIGN------VKVMRAALEACHKGWGVSVVV 291 (373)
T ss_dssp SCBSEEEECSCC------HHHHHHHHHTBCTTTCEEEEC
T ss_pred CCCCEEEECCCc------HHHHHHHHHhhccCCcEEEEE
Confidence 368999865432 24577888999999 998864
No 337
>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}
Probab=78.25 E-value=5.1 Score=35.19 Aligned_cols=33 Identities=12% Similarity=0.096 Sum_probs=24.2
Q ss_pred CceeEEeeeehhhccccHHHHHHHHHHhccCC-cEEEEEe
Q psy1420 167 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPG-GRFLCLE 205 (241)
Q Consensus 167 ~~~D~V~~~~~l~~~~~~~~~l~~~~~~Lkpg-G~l~i~~ 205 (241)
+.+|+|+.+.+- ...++.+.+.|++| |++++..
T Consensus 262 gg~D~vid~~g~------~~~~~~~~~~l~~g~G~iv~~G 295 (378)
T 3uko_A 262 GGVDYSFECIGN------VSVMRAALECCHKGWGTSVIVG 295 (378)
T ss_dssp SCBSEEEECSCC------HHHHHHHHHTBCTTTCEEEECS
T ss_pred CCCCEEEECCCC------HHHHHHHHHHhhccCCEEEEEc
Confidence 379999865432 24678888999997 9988753
No 338
>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*
Probab=77.99 E-value=6.3 Score=34.47 Aligned_cols=33 Identities=15% Similarity=0.062 Sum_probs=24.1
Q ss_pred CceeEEeeeehhhccccHHHHHHHHHHhccCC-cEEEEEe
Q psy1420 167 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPG-GRFLCLE 205 (241)
Q Consensus 167 ~~~D~V~~~~~l~~~~~~~~~l~~~~~~Lkpg-G~l~i~~ 205 (241)
+.+|+|+.+.+- ...++.+.+.|+++ |++++..
T Consensus 260 gg~Dvvid~~g~------~~~~~~~~~~l~~~~G~iv~~G 293 (373)
T 1p0f_A 260 GGVDYAVECAGR------IETMMNALQSTYCGSGVTVVLG 293 (373)
T ss_dssp SCBSEEEECSCC------HHHHHHHHHTBCTTTCEEEECC
T ss_pred CCCCEEEECCCC------HHHHHHHHHHHhcCCCEEEEEc
Confidence 368999865432 24577888999999 9988653
No 339
>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}
Probab=77.73 E-value=7 Score=34.71 Aligned_cols=18 Identities=6% Similarity=-0.180 Sum_probs=14.7
Q ss_pred CceeecCChHhHHHHHHH
Q psy1420 99 FPNQIDIPNPRLRFLEAN 116 (241)
Q Consensus 99 ~~~~~D~s~~~~~~~~~~ 116 (241)
.++++|.++...+.+++.
T Consensus 240 ~Vi~~~~~~~~~~~~~~l 257 (404)
T 3ip1_A 240 KVILSEPSEVRRNLAKEL 257 (404)
T ss_dssp EEEEECSCHHHHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHc
Confidence 799999999888877643
No 340
>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23
Probab=77.15 E-value=1.6 Score=37.87 Aligned_cols=42 Identities=26% Similarity=0.578 Sum_probs=33.5
Q ss_pred cccHHHHHHHHHHhccCCcEEEEEecCH---HHHHHHHHHCCCce
Q psy1420 181 VTRIDKALSEAYRVLKPGGRFLCLEFSH---EEFKSMIESAGFQY 222 (241)
Q Consensus 181 ~~~~~~~l~~~~~~LkpgG~l~i~~~~~---~~~~~~l~~~Gf~~ 222 (241)
+...+.+|..+.++|+|||++.+++|.. .-+++.+++.+|.+
T Consensus 209 L~~L~~~L~~a~~~L~~gGrl~visfHSLEDRiVK~~~~~~~~~~ 253 (285)
T 1wg8_A 209 LNALKEFLEQAAEVLAPGGRLVVIAFHSLEDRVVKRFLRESGLKV 253 (285)
T ss_dssp HHHHHHHHHHHHHHEEEEEEEEEEECSHHHHHHHHHHHHHHCSEE
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEEecCcHHHHHHHHHHHhCCccc
Confidence 4456899999999999999999999988 66677777655543
No 341
>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1
Probab=76.69 E-value=6 Score=34.31 Aligned_cols=33 Identities=15% Similarity=0.261 Sum_probs=23.9
Q ss_pred CceeEEeeeehhhccccHHHHHHHHHHhccCCcEEEEEe
Q psy1420 167 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 205 (241)
Q Consensus 167 ~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 205 (241)
..+|+|+.+.+- ...++.+.+.|+|+|+++...
T Consensus 239 ~g~D~vid~~g~------~~~~~~~~~~l~~~G~iv~~G 271 (352)
T 1e3j_A 239 DLPNVTIDCSGN------EKCITIGINITRTGGTLMLVG 271 (352)
T ss_dssp SCCSEEEECSCC------HHHHHHHHHHSCTTCEEEECS
T ss_pred CCCCEEEECCCC------HHHHHHHHHHHhcCCEEEEEe
Confidence 468999865432 235777889999999988753
No 342
>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...
Probab=76.59 E-value=7.4 Score=34.03 Aligned_cols=32 Identities=9% Similarity=0.017 Sum_probs=23.4
Q ss_pred CceeEEeeeehhhccccHHHHHHHHHHhccCC-cEEEEE
Q psy1420 167 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPG-GRFLCL 204 (241)
Q Consensus 167 ~~~D~V~~~~~l~~~~~~~~~l~~~~~~Lkpg-G~l~i~ 204 (241)
+.+|+|+.+-+- ...++.+.+.|+++ |++++.
T Consensus 260 ~g~D~vid~~g~------~~~~~~~~~~l~~~~G~iv~~ 292 (374)
T 2jhf_A 260 GGVDFSFEVIGR------LDTMVTALSCCQEAYGVSVIV 292 (374)
T ss_dssp SCBSEEEECSCC------HHHHHHHHHHBCTTTCEEEEC
T ss_pred CCCcEEEECCCC------HHHHHHHHHHhhcCCcEEEEe
Confidence 368999865432 24577888999999 998764
No 343
>4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda}
Probab=76.16 E-value=9.7 Score=33.35 Aligned_cols=45 Identities=16% Similarity=0.163 Sum_probs=31.1
Q ss_pred CeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHh
Q psy1420 45 TKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAE 118 (241)
Q Consensus 45 ~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~ 118 (241)
.+++|+-||.|..+ ..+.. ++- ....+.++|+++.+.+..+.+..
T Consensus 4 ~~~idLFaG~GG~~-------------~G~~~------aG~----------~~~~v~a~e~d~~a~~ty~~N~~ 48 (333)
T 4h0n_A 4 HKILELYSGIGGMH-------------CAWKE------SGL----------DGEIVAAVDINTVANSVYKHNFP 48 (333)
T ss_dssp EEEEEETCTTTHHH-------------HHHHH------HTC----------SEEEEEEECCCHHHHHHHHHHCT
T ss_pred CEEEEECcCccHHH-------------HHHHH------cCC----------CceEEEEEeCCHHHHHHHHHhCC
Confidence 47999999999987 22221 010 01347899999999888877754
No 344
>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1
Probab=76.09 E-value=7.4 Score=34.01 Aligned_cols=31 Identities=13% Similarity=0.042 Sum_probs=23.2
Q ss_pred ceeEEeeeehhhccccHHHHHHHHHHhccCC-cEEEEE
Q psy1420 168 SYSAYTIAFGIRNVTRIDKALSEAYRVLKPG-GRFLCL 204 (241)
Q Consensus 168 ~~D~V~~~~~l~~~~~~~~~l~~~~~~Lkpg-G~l~i~ 204 (241)
.+|+|+.+.+- ...++.+.++|+|+ |++++.
T Consensus 262 g~D~vid~~g~------~~~~~~~~~~l~~~~G~iv~~ 293 (374)
T 1cdo_A 262 GVDFSLECVGN------VGVMRNALESCLKGWGVSVLV 293 (374)
T ss_dssp CBSEEEECSCC------HHHHHHHHHTBCTTTCEEEEC
T ss_pred CCCEEEECCCC------HHHHHHHHHHhhcCCcEEEEE
Confidence 68999864432 24577888999999 998864
No 345
>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A
Probab=75.13 E-value=2.4 Score=37.07 Aligned_cols=53 Identities=13% Similarity=0.045 Sum_probs=39.4
Q ss_pred HHHHhhcCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCCh---Hh
Q psy1420 33 DIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPN---PR 109 (241)
Q Consensus 33 ~~~~~~l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~---~~ 109 (241)
+.+++.. ..++..|||.=||+|.++ ..... .+...+++|+++ ..
T Consensus 233 ~~~i~~~-~~~~~~vlDpF~GsGtt~-------------~aa~~-------------------~~r~~ig~e~~~~~~~~ 279 (319)
T 1eg2_A 233 ERLVRAL-SHPGSTVLDFFAGSGVTA-------------RVAIQ-------------------EGRNSICTDAAPVFKEY 279 (319)
T ss_dssp HHHHHHH-SCTTCEEEETTCTTCHHH-------------HHHHH-------------------HTCEEEEEESSTHHHHH
T ss_pred HHHHHHh-CCCCCEEEecCCCCCHHH-------------HHHHH-------------------cCCcEEEEECCccHHHH
Confidence 3444443 367889999999999988 33333 467899999999 88
Q ss_pred HHHHHHHHh
Q psy1420 110 LRFLEANAE 118 (241)
Q Consensus 110 ~~~~~~~~~ 118 (241)
.+.+.+++.
T Consensus 280 ~~~~~~Rl~ 288 (319)
T 1eg2_A 280 YQKQLTFLQ 288 (319)
T ss_dssp HHHHHHHC-
T ss_pred HHHHHHHHH
Confidence 888888766
No 346
>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*
Probab=74.49 E-value=4.7 Score=34.60 Aligned_cols=31 Identities=23% Similarity=0.284 Sum_probs=23.7
Q ss_pred CceeEEeeeehhhccccHHHHHHHHHHhccCCcEEEEE
Q psy1420 167 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCL 204 (241)
Q Consensus 167 ~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~ 204 (241)
+.+|+++.+.+- ..+..+.+.|+|+|++++.
T Consensus 213 ~~~d~vi~~~g~-------~~~~~~~~~l~~~G~~v~~ 243 (333)
T 1v3u_A 213 DGYDCYFDNVGG-------EFLNTVLSQMKDFGKIAIC 243 (333)
T ss_dssp TCEEEEEESSCH-------HHHHHHHTTEEEEEEEEEC
T ss_pred CCCeEEEECCCh-------HHHHHHHHHHhcCCEEEEE
Confidence 469999876542 2477788999999998765
No 347
>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}
Probab=73.85 E-value=46 Score=29.25 Aligned_cols=122 Identities=11% Similarity=0.157 Sum_probs=72.7
Q ss_pred HHHHhhcCC-CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHH
Q psy1420 33 DIFIDRLGP-THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLR 111 (241)
Q Consensus 33 ~~~~~~l~~-~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~ 111 (241)
+.+++.+.. ..+.+||.++.+-|..+ ..+.. ..+..+.-|-....
T Consensus 27 ~~ll~~~~~~~~~~~~~~~~d~~gal~-------------~~~~~---------------------~~~~~~~ds~~~~~ 72 (375)
T 4dcm_A 27 EYLLQQLDDTEIRGPVLILNDAFGALS-------------CALAE---------------------HKPYSIGDSYISEL 72 (375)
T ss_dssp HHHHHTTTTCCCCSCEEEECCSSSHHH-------------HHTGG---------------------GCCEEEESCHHHHH
T ss_pred HHHHHhhhhccCCCCEEEECCCCCHHH-------------Hhhcc---------------------CCceEEEhHHHHHH
Confidence 344554433 24568999999999876 22211 12344433555556
Q ss_pred HHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCCCCCceeEEeeeehhhccccHHHHHHHH
Q psy1420 112 FLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEA 191 (241)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~V~~~~~l~~~~~~~~~l~~~ 191 (241)
....++. ..++....+.+... ...+ ...+|+|+.... .+.......|..+
T Consensus 73 ~~~~n~~-------------------------~~~~~~~~~~~~~~-~~~~---~~~~~~v~~~lp-k~~~~l~~~L~~l 122 (375)
T 4dcm_A 73 ATRENLR-------------------------LNGIDESSVKFLDS-TADY---PQQPGVVLIKVP-KTLALLEQQLRAL 122 (375)
T ss_dssp HHHHHHH-------------------------HTTCCGGGSEEEET-TSCC---CSSCSEEEEECC-SCHHHHHHHHHHH
T ss_pred HHHHHHH-------------------------HcCCCccceEeccc-cccc---ccCCCEEEEEcC-CCHHHHHHHHHHH
Confidence 6777777 55655334555432 2222 356899886332 2344556778889
Q ss_pred HHhccCCcEEEEEecCH---HHHHHHHHHC
Q psy1420 192 YRVLKPGGRFLCLEFSH---EEFKSMIESA 218 (241)
Q Consensus 192 ~~~LkpgG~l~i~~~~~---~~~~~~l~~~ 218 (241)
...|+||+.+++..-.. ....+.+++.
T Consensus 123 ~~~l~~~~~i~~~g~~~~~~~~~~~~l~~~ 152 (375)
T 4dcm_A 123 RKVVTSDTRIIAGAKARDIHTSTLELFEKV 152 (375)
T ss_dssp HTTCCTTSEEEEEEEGGGCCHHHHHHHHHH
T ss_pred HhhCCCCCEEEEEecccchHHHHHHHHHhh
Confidence 99999999998765443 5555556554
No 348
>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*
Probab=73.66 E-value=8.5 Score=33.27 Aligned_cols=33 Identities=24% Similarity=0.383 Sum_probs=24.0
Q ss_pred CceeEEeeeehhhccccHHHHHHHHHHhccCCcEEEEEe
Q psy1420 167 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 205 (241)
Q Consensus 167 ~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 205 (241)
..+|+|+.+.+. ...++.+.+.|+++|+++...
T Consensus 235 ~g~D~vid~~g~------~~~~~~~~~~l~~~G~iv~~g 267 (348)
T 2d8a_A 235 NGVDVFLEFSGA------PKALEQGLQAVTPAGRVSLLG 267 (348)
T ss_dssp SCEEEEEECSCC------HHHHHHHHHHEEEEEEEEECC
T ss_pred CCCCEEEECCCC------HHHHHHHHHHHhcCCEEEEEc
Confidence 369999865432 245777888999999988653
No 349
>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*
Probab=73.59 E-value=9.1 Score=33.45 Aligned_cols=31 Identities=16% Similarity=0.100 Sum_probs=23.2
Q ss_pred ceeEEeeeehhhccccHHHHHHHHHHhccCC-cEEEEE
Q psy1420 168 SYSAYTIAFGIRNVTRIDKALSEAYRVLKPG-GRFLCL 204 (241)
Q Consensus 168 ~~D~V~~~~~l~~~~~~~~~l~~~~~~Lkpg-G~l~i~ 204 (241)
.+|+|+.+-+- ...++.+.+.|+++ |++++.
T Consensus 265 g~Dvvid~~G~------~~~~~~~~~~l~~~~G~iv~~ 296 (376)
T 1e3i_A 265 GVDYSLDCAGT------AQTLKAAVDCTVLGWGSCTVV 296 (376)
T ss_dssp CBSEEEESSCC------HHHHHHHHHTBCTTTCEEEEC
T ss_pred CccEEEECCCC------HHHHHHHHHHhhcCCCEEEEE
Confidence 68999864432 24577888999999 998764
No 350
>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*
Probab=73.28 E-value=4 Score=35.07 Aligned_cols=31 Identities=10% Similarity=0.078 Sum_probs=24.1
Q ss_pred CceeEEeeeehhhccccHHHHHHHHHHhccCCcEEEEE
Q psy1420 167 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCL 204 (241)
Q Consensus 167 ~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~ 204 (241)
+.+|+|+.+.+- ..+..+.+.|+++|++++.
T Consensus 217 ~~~d~vi~~~g~-------~~~~~~~~~l~~~G~iv~~ 247 (336)
T 4b7c_A 217 KGIDVFFDNVGG-------EILDTVLTRIAFKARIVLC 247 (336)
T ss_dssp TCEEEEEESSCH-------HHHHHHHTTEEEEEEEEEC
T ss_pred CCceEEEECCCc-------chHHHHHHHHhhCCEEEEE
Confidence 469999875542 3678888999999998875
No 351
>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A
Probab=72.29 E-value=8.2 Score=33.27 Aligned_cols=32 Identities=19% Similarity=0.297 Sum_probs=23.4
Q ss_pred CceeEEeeeehhhccccHHHHHHHHHHhccCCcEEEEE
Q psy1420 167 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCL 204 (241)
Q Consensus 167 ~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~ 204 (241)
+.+|+|+.+.+. ...++.+.++|+++|+++..
T Consensus 229 ~~~d~vid~~g~------~~~~~~~~~~l~~~G~~v~~ 260 (339)
T 1rjw_A 229 GGVHAAVVTAVS------KPAFQSAYNSIRRGGACVLV 260 (339)
T ss_dssp SSEEEEEESSCC------HHHHHHHHHHEEEEEEEEEC
T ss_pred CCCCEEEECCCC------HHHHHHHHHHhhcCCEEEEe
Confidence 368999865432 24577788899999998864
No 352
>2hwk_A Helicase NSP2; rossman fold, alpha/beta/alpha, multi-domain, hydrolase; 2.45A {Venezuelan equine encephalitis virus}
Probab=71.73 E-value=8.6 Score=33.47 Aligned_cols=58 Identities=16% Similarity=0.304 Sum_probs=37.1
Q ss_pred CceeEEeeeehh----hc-c--cc----HHHHHHHHHHhccCCcEEEEEecCH-----HHHHHHHHHCCCceEEE
Q psy1420 167 DSYSAYTIAFGI----RN-V--TR----IDKALSEAYRVLKPGGRFLCLEFSH-----EEFKSMIESAGFQYVTY 225 (241)
Q Consensus 167 ~~~D~V~~~~~l----~~-~--~~----~~~~l~~~~~~LkpgG~l~i~~~~~-----~~~~~~l~~~Gf~~~~~ 225 (241)
+++|+|++...- |+ . .| ..-++.-+..+|+|||.+++..+.. +.+.+.+++. |+.++.
T Consensus 205 ~k~DvV~SDMApn~sGh~yqQC~DHarii~Lal~fA~~vLkPGGtfV~KvyggaDr~se~lv~~LaR~-F~~Vr~ 278 (320)
T 2hwk_A 205 PKYDIIFVNVRTPYKYHHYQQCEDHAIKLSMLTKKACLHLNPGGTCVSIGYGYADRASESIIGAIARQ-FKFSRV 278 (320)
T ss_dssp CCEEEEEEECCCCCCSCHHHHHHHHHHHHHHTHHHHGGGEEEEEEEEEEECCCCSHHHHHHHHHHHTT-EEEEEE
T ss_pred CcCCEEEEcCCCCCCCccccccchHHHHHHHHHHHHHHhcCCCceEEEEEecCCcccHHHHHHHHHHh-cceeee
Confidence 679999986322 22 2 11 2346677788999999999987665 4555555444 655443
No 353
>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*
Probab=70.86 E-value=8 Score=33.75 Aligned_cols=32 Identities=16% Similarity=0.216 Sum_probs=24.4
Q ss_pred CceeEEeeeehhhccccHHHHHHHHHHhccCCcEEEEEe
Q psy1420 167 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 205 (241)
Q Consensus 167 ~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 205 (241)
..+|+|+.+.+- ..++.+.+.|+++|++++..
T Consensus 230 ~g~D~vid~~g~-------~~~~~~~~~l~~~G~iv~~g 261 (362)
T 2c0c_A 230 EGVDVVYESVGG-------AMFDLAVDALATKGRLIVIG 261 (362)
T ss_dssp TCEEEEEECSCT-------HHHHHHHHHEEEEEEEEECC
T ss_pred CCCCEEEECCCH-------HHHHHHHHHHhcCCEEEEEe
Confidence 469999876542 46778889999999988754
No 354
>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*
Probab=70.82 E-value=5.2 Score=34.39 Aligned_cols=31 Identities=19% Similarity=0.243 Sum_probs=23.6
Q ss_pred CceeEEeeeehhhccccHHHHHHHHHHhccCCcEEEEE
Q psy1420 167 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCL 204 (241)
Q Consensus 167 ~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~ 204 (241)
..+|+|+.+.+- ..++.+.++|+|+|++++.
T Consensus 216 ~g~D~vid~~g~-------~~~~~~~~~l~~~G~iv~~ 246 (334)
T 3qwb_A 216 KGVDASFDSVGK-------DTFEISLAALKRKGVFVSF 246 (334)
T ss_dssp SCEEEEEECCGG-------GGHHHHHHHEEEEEEEEEC
T ss_pred CCceEEEECCCh-------HHHHHHHHHhccCCEEEEE
Confidence 469999976543 3467778899999998875
No 355
>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*
Probab=70.45 E-value=6.5 Score=33.85 Aligned_cols=31 Identities=19% Similarity=0.203 Sum_probs=23.7
Q ss_pred CceeEEeeeehhhccccHHHHHHHHHHhccCCcEEEEE
Q psy1420 167 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCL 204 (241)
Q Consensus 167 ~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~ 204 (241)
+.+|+|+.+.+- ..+..+.+.|+++|++++.
T Consensus 224 ~~~d~vi~~~g~-------~~~~~~~~~l~~~G~~v~~ 254 (345)
T 2j3h_A 224 NGIDIYFENVGG-------KMLDAVLVNMNMHGRIAVC 254 (345)
T ss_dssp TCEEEEEESSCH-------HHHHHHHTTEEEEEEEEEC
T ss_pred CCCcEEEECCCH-------HHHHHHHHHHhcCCEEEEE
Confidence 469999865442 3677888999999998864
No 356
>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}
Probab=70.03 E-value=5.3 Score=34.61 Aligned_cols=32 Identities=25% Similarity=0.333 Sum_probs=23.0
Q ss_pred CceeEEeeeehhhccccHHHHHHHHHHhccCCcEEEEEe
Q psy1420 167 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 205 (241)
Q Consensus 167 ~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 205 (241)
..+|+|+.+.+- ..+..+.+.|+++|++++..
T Consensus 226 ~g~Dvvid~~g~-------~~~~~~~~~l~~~G~iv~~G 257 (342)
T 4eye_A 226 AGVDMVVDPIGG-------PAFDDAVRTLASEGRLLVVG 257 (342)
T ss_dssp SCEEEEEESCC---------CHHHHHHTEEEEEEEEEC-
T ss_pred CCceEEEECCch-------hHHHHHHHhhcCCCEEEEEE
Confidence 369999976543 24677888999999988753
No 357
>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*
Probab=69.85 E-value=5.1 Score=34.36 Aligned_cols=32 Identities=9% Similarity=0.134 Sum_probs=23.9
Q ss_pred CceeEEeeeehhhccccHHHHHHHHHHhccCCcEEEEEe
Q psy1420 167 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 205 (241)
Q Consensus 167 ~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 205 (241)
..+|+|+.+.+- ..+..+.++|+|+|++++..
T Consensus 208 ~g~Dvvid~~g~-------~~~~~~~~~l~~~G~iv~~g 239 (325)
T 3jyn_A 208 KKCPVVYDGVGQ-------DTWLTSLDSVAPRGLVVSFG 239 (325)
T ss_dssp CCEEEEEESSCG-------GGHHHHHTTEEEEEEEEECC
T ss_pred CCceEEEECCCh-------HHHHHHHHHhcCCCEEEEEe
Confidence 479999875543 34667788999999988753
No 358
>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}
Probab=68.56 E-value=4.2 Score=35.16 Aligned_cols=32 Identities=13% Similarity=0.120 Sum_probs=23.9
Q ss_pred ceeEEeeeehhhccccHHHHHHHHHHhccCCcEEEEEe
Q psy1420 168 SYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 205 (241)
Q Consensus 168 ~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 205 (241)
.+|+|+.+-+- ...++.+.++|+|+|+++...
T Consensus 238 g~D~vid~~g~------~~~~~~~~~~l~~~G~iv~~g 269 (344)
T 2h6e_A 238 GASIAIDLVGT------EETTYNLGKLLAQEGAIILVG 269 (344)
T ss_dssp CEEEEEESSCC------HHHHHHHHHHEEEEEEEEECC
T ss_pred CccEEEECCCC------hHHHHHHHHHhhcCCEEEEeC
Confidence 69999865432 236778889999999988653
No 359
>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*
Probab=65.86 E-value=6.6 Score=33.97 Aligned_cols=32 Identities=19% Similarity=0.199 Sum_probs=23.3
Q ss_pred CceeEEeeeehhhccccHHHHHHHHHHhccCCcEEEEE
Q psy1420 167 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCL 204 (241)
Q Consensus 167 ~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~ 204 (241)
+.+|+++.+.+- ...++.+.+.|+|+|++++.
T Consensus 239 ~~~d~vi~~~g~------~~~~~~~~~~l~~~G~iv~~ 270 (347)
T 1jvb_A 239 KGVDAVIDLNNS------EKTLSVYPKALAKQGKYVMV 270 (347)
T ss_dssp SCEEEEEESCCC------HHHHTTGGGGEEEEEEEEEC
T ss_pred CCceEEEECCCC------HHHHHHHHHHHhcCCEEEEE
Confidence 478999865432 23567788899999998764
No 360
>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*
Probab=65.80 E-value=6.8 Score=33.79 Aligned_cols=33 Identities=15% Similarity=0.171 Sum_probs=24.4
Q ss_pred CceeEEeeeehhhccccHHHHHHHHHHhccCCcEEEEEe
Q psy1420 167 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 205 (241)
Q Consensus 167 ~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 205 (241)
..+|+|+.+-+- ...++.+.+.|+|+|++++..
T Consensus 238 ~g~d~v~d~~G~------~~~~~~~~~~l~~~G~iv~~G 270 (345)
T 3jv7_A 238 QGATAVFDFVGA------QSTIDTAQQVVAVDGHISVVG 270 (345)
T ss_dssp GCEEEEEESSCC------HHHHHHHHHHEEEEEEEEECS
T ss_pred CCCeEEEECCCC------HHHHHHHHHHHhcCCEEEEEC
Confidence 369999864432 246788889999999988753
No 361
>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1
Probab=64.76 E-value=10 Score=32.91 Aligned_cols=31 Identities=19% Similarity=0.294 Sum_probs=23.3
Q ss_pred CceeEEeeeehhhccccHHHHHHHHHHhccCCcEEEEE
Q psy1420 167 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCL 204 (241)
Q Consensus 167 ~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~ 204 (241)
..+|+|+.+.+- ..+....++|+|+|++++.
T Consensus 238 ~~~D~vi~~~G~-------~~~~~~~~~l~~~G~iv~~ 268 (351)
T 1yb5_A 238 KGIDIIIEMLAN-------VNLSKDLSLLSHGGRVIVV 268 (351)
T ss_dssp TCEEEEEESCHH-------HHHHHHHHHEEEEEEEEEC
T ss_pred CCcEEEEECCCh-------HHHHHHHHhccCCCEEEEE
Confidence 369999876542 2467778999999998764
No 362
>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}
Probab=64.73 E-value=5.7 Score=34.81 Aligned_cols=33 Identities=21% Similarity=0.227 Sum_probs=24.7
Q ss_pred CCceeEEeeeehhhccccHHHHHHHHHHhccCCcEEEEE
Q psy1420 166 SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCL 204 (241)
Q Consensus 166 ~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~ 204 (241)
.+.+|+|+.+.+ -...++.+.++|+|+|++++.
T Consensus 237 ~~g~Dvvid~~g------~~~~~~~~~~~l~~~G~iv~~ 269 (363)
T 4dvj_A 237 LGAPAFVFSTTH------TDKHAAEIADLIAPQGRFCLI 269 (363)
T ss_dssp SCCEEEEEECSC------HHHHHHHHHHHSCTTCEEEEC
T ss_pred CCCceEEEECCC------chhhHHHHHHHhcCCCEEEEE
Confidence 357999986433 224678888999999999875
No 363
>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}
Probab=64.45 E-value=5.2 Score=35.56 Aligned_cols=38 Identities=29% Similarity=0.566 Sum_probs=30.9
Q ss_pred cccHHHHHHHHHHhccCCcEEEEEecCH---HHHHHHHHHC
Q psy1420 181 VTRIDKALSEAYRVLKPGGRFLCLEFSH---EEFKSMIESA 218 (241)
Q Consensus 181 ~~~~~~~l~~~~~~LkpgG~l~i~~~~~---~~~~~~l~~~ 218 (241)
+..++.+|..+.++|+|||+|.+++|.. .-+++.+++.
T Consensus 250 L~~L~~~L~~a~~~L~~gGRl~VISFHSLEDRiVK~~f~~~ 290 (347)
T 3tka_A 250 LEEIEQALKSSLNVLAPGGRLSIISFHSLEDRIVKRFMREN 290 (347)
T ss_dssp HHHHHHHHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEEecCchhHHHHHHHHHHh
Confidence 3456789999999999999999999987 5566666653
No 364
>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}
Probab=63.47 E-value=21 Score=30.49 Aligned_cols=33 Identities=9% Similarity=0.097 Sum_probs=23.2
Q ss_pred CceeEEeeeehhhccccHHHHHHHHHHhccCCcEEEEEe
Q psy1420 167 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 205 (241)
Q Consensus 167 ~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 205 (241)
..+|+|+...+- ...++.+.++++++|++.+..
T Consensus 228 ~g~d~v~d~~G~------~~~~~~~~~~l~~~G~~v~~g 260 (346)
T 4a2c_A 228 RFNQLILETAGV------PQTVELAVEIAGPHAQLALVG 260 (346)
T ss_dssp CSSEEEEECSCS------HHHHHHHHHHCCTTCEEEECC
T ss_pred CCcccccccccc------cchhhhhhheecCCeEEEEEe
Confidence 457888754332 345777888999999988753
No 365
>4f3n_A Uncharacterized ACR, COG1565 superfamily; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.75A {Burkholderia thailandensis} PDB: 4g67_A*
Probab=63.42 E-value=6.3 Score=36.11 Aligned_cols=50 Identities=12% Similarity=0.120 Sum_probs=34.4
Q ss_pred CCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHHh
Q psy1420 44 DTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAE 118 (241)
Q Consensus 44 ~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~ 118 (241)
..+|+|+|.|+|.+. ..++..+.+. .+ ...++..+|+|+...+.-++.+.
T Consensus 138 ~~~ivE~GaG~GtLa-------------~DiL~~l~~~---~~---------~~~~y~iVE~Sp~Lr~~Q~~~L~ 187 (432)
T 4f3n_A 138 TRRVMEFGAGTGKLA-------------AGLLTALAAL---GV---------ELDEYAIVDLSGELRARQRETLG 187 (432)
T ss_dssp CCEEEEESCTTSHHH-------------HHHHHHHHHT---TC---------CCSEEEEECTTSSSHHHHHHHHH
T ss_pred CCeEEEeCCCccHHH-------------HHHHHHHHhc---CC---------CCceEEEEEcCHHHHHHHHHHHh
Confidence 468999999999998 5555532211 00 12378999999988777666554
No 366
>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}
Probab=63.37 E-value=13 Score=31.87 Aligned_cols=31 Identities=13% Similarity=0.099 Sum_probs=22.9
Q ss_pred CceeEEeeeehhhccccHHHHHHHHHHhccCCcEEEEE
Q psy1420 167 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCL 204 (241)
Q Consensus 167 ~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~ 204 (241)
..+|+|+.+.+ . ..++.+.+.|+++|+++..
T Consensus 234 ~~~d~vi~~~g-~------~~~~~~~~~l~~~G~~v~~ 264 (343)
T 2eih_A 234 KGADKVVDHTG-A------LYFEGVIKATANGGRIAIA 264 (343)
T ss_dssp TCEEEEEESSC-S------SSHHHHHHHEEEEEEEEES
T ss_pred CCceEEEECCC-H------HHHHHHHHhhccCCEEEEE
Confidence 46999987655 2 2466778889999998764
No 367
>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1
Probab=63.35 E-value=7.7 Score=33.11 Aligned_cols=32 Identities=9% Similarity=0.154 Sum_probs=23.9
Q ss_pred CceeEEeeeehhhccccHHHHHHHHHHhccCCcEEEEEe
Q psy1420 167 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 205 (241)
Q Consensus 167 ~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 205 (241)
..+|+++.+.+ ...++.+.++|+++|++++..
T Consensus 208 ~~~D~vi~~~g-------~~~~~~~~~~l~~~G~iv~~g 239 (327)
T 1qor_A 208 KKVRVVYDSVG-------RDTWERSLDCLQRRGLMVSFG 239 (327)
T ss_dssp CCEEEEEECSC-------GGGHHHHHHTEEEEEEEEECC
T ss_pred CCceEEEECCc-------hHHHHHHHHHhcCCCEEEEEe
Confidence 36999987655 134677888999999988753
No 368
>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A
Probab=63.26 E-value=6.1 Score=34.42 Aligned_cols=47 Identities=11% Similarity=-0.065 Sum_probs=30.5
Q ss_pred cCCCCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHH
Q psy1420 39 LGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEA 115 (241)
Q Consensus 39 l~~~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~ 115 (241)
...+++.+||.+|+| ... ....+++.. ...++++++.++...+.+++
T Consensus 175 ~~~~~g~~VlV~GaG--~vG----------~~~~qlak~------------------~Ga~Vi~~~~~~~~~~~~~~ 221 (360)
T 1piw_A 175 NGCGPGKKVGIVGLG--GIG----------SMGTLISKA------------------MGAETYVISRSSRKREDAMK 221 (360)
T ss_dssp TTCSTTCEEEEECCS--HHH----------HHHHHHHHH------------------HTCEEEEEESSSTTHHHHHH
T ss_pred cCCCCCCEEEEECCC--HHH----------HHHHHHHHH------------------CCCEEEEEcCCHHHHHHHHH
Confidence 566788999999973 333 001333331 24569999999888887764
No 369
>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A*
Probab=62.64 E-value=9.8 Score=32.35 Aligned_cols=33 Identities=15% Similarity=0.181 Sum_probs=24.7
Q ss_pred CCceeEEeeeehhhccccHHHHHHHHHHhccCCcEEEEEe
Q psy1420 166 SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 205 (241)
Q Consensus 166 ~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 205 (241)
.+.+|+|+.+.+- ..++.+.++|+|+|+++...
T Consensus 209 ~~~~d~v~d~~g~-------~~~~~~~~~l~~~G~iv~~G 241 (324)
T 3nx4_A 209 KQLWAGAIDTVGD-------KVLAKVLAQMNYGGCVAACG 241 (324)
T ss_dssp CCCEEEEEESSCH-------HHHHHHHHTEEEEEEEEECC
T ss_pred CCCccEEEECCCc-------HHHHHHHHHHhcCCEEEEEe
Confidence 3579998864331 27888899999999998753
No 370
>2km1_A Protein DRE2; yeast, antiapoptotic, protein binding; NMR {Saccharomyces cerevisiae}
Probab=61.75 E-value=5.4 Score=30.72 Aligned_cols=59 Identities=20% Similarity=0.269 Sum_probs=38.9
Q ss_pred CCCCCceeEEeeeehhh-c-cccHHHHHHHHHHhccCCcEEEEEecCHHHHHHHHHHCCCceEE
Q psy1420 163 PIESDSYSAYTIAFGIR-N-VTRIDKALSEAYRVLKPGGRFLCLEFSHEEFKSMIESAGFQYVT 224 (241)
Q Consensus 163 ~~~~~~~D~V~~~~~l~-~-~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~l~~~Gf~~~~ 224 (241)
.++...||.|+.-..-. . ..-+.+.+..+.+.|||||.|.- ... ....=+.-+||.+++
T Consensus 54 sLp~stYD~V~~lt~~~~~~~~l~r~li~~l~~aLkpgG~L~g--l~~-~~~~EailaGfvv~~ 114 (136)
T 2km1_A 54 TLENAKYETVHYLTPEAQTDIKFPKKLISVLADSLKPNGSLIG--LSD-IYKVDALINGFEIIN 114 (136)
T ss_dssp CCCSSSCCSEEEECCCSSCSCCCCHHHHHHHHTTCCTTCCEEC--CCH-HHHHHHHHHTEEEEC
T ss_pred cCCcccccEEEEecCCccchhhcCHHHHHHHHHHhCCCCEEEe--cCc-chhhHHHhhccEecc
Confidence 34578899988543222 1 22347899999999999999986 332 333344457887554
No 371
>3trk_A Nonstructural polyprotein; hydrolase; 2.40A {Chikungunya virus}
Probab=61.60 E-value=9.7 Score=32.88 Aligned_cols=43 Identities=23% Similarity=0.433 Sum_probs=28.8
Q ss_pred CCceeEEeeeeh----hhccc-------cHHHHHHHHHHhccCCcEEEEEecCH
Q psy1420 166 SDSYSAYTIAFG----IRNVT-------RIDKALSEAYRVLKPGGRFLCLEFSH 208 (241)
Q Consensus 166 ~~~~D~V~~~~~----l~~~~-------~~~~~l~~~~~~LkpgG~l~i~~~~~ 208 (241)
-++||+|+++-. .||.. ...-+-....++|+|||.+++..++-
T Consensus 209 ~grYDlVfvNv~TpyR~HHYQQCeDHA~~l~mL~~~al~~L~pGGtlv~~aYGy 262 (324)
T 3trk_A 209 LGRYDLVVINIHTPFRIHHYQQCVDHAMKLQMLGGDSLRLLKPGGSLLIRAYGY 262 (324)
T ss_dssp GCCEEEEEEECCCCCCSSHHHHHHHHHHHHHHHHHHGGGGEEEEEEEEEEECCC
T ss_pred CCceeEEEEecCCccccchHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEeecc
Confidence 479999998732 23321 12334456667999999999987665
No 372
>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*
Probab=61.27 E-value=5.4 Score=34.94 Aligned_cols=31 Identities=13% Similarity=0.259 Sum_probs=20.8
Q ss_pred ceeEEeeeehhhccccHHHHHHHHHHhccCCcEEEEE
Q psy1420 168 SYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCL 204 (241)
Q Consensus 168 ~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~ 204 (241)
.+|+|+.+.+... .++.+.+.|+++|+++..
T Consensus 251 ~~D~vid~~g~~~------~~~~~~~~l~~~G~iv~~ 281 (366)
T 1yqd_A 251 TLDGIIDTVSAVH------PLLPLFGLLKSHGKLILV 281 (366)
T ss_dssp CEEEEEECCSSCC------CSHHHHHHEEEEEEEEEC
T ss_pred CCCEEEECCCcHH------HHHHHHHHHhcCCEEEEE
Confidence 6899986554321 234566788999988764
No 373
>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*
Probab=61.05 E-value=6.1 Score=34.11 Aligned_cols=32 Identities=22% Similarity=0.254 Sum_probs=23.5
Q ss_pred CceeEEeeeehhhccccHHHHHHHHHHhccCCcEEEEE
Q psy1420 167 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCL 204 (241)
Q Consensus 167 ~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~ 204 (241)
..+|+|+.+.+- ...++.+.+.|+++|++++.
T Consensus 230 ~g~D~vid~~g~------~~~~~~~~~~l~~~G~iv~~ 261 (343)
T 2dq4_A 230 SGVEVLLEFSGN------EAAIHQGLMALIPGGEARIL 261 (343)
T ss_dssp SCEEEEEECSCC------HHHHHHHHHHEEEEEEEEEC
T ss_pred CCCCEEEECCCC------HHHHHHHHHHHhcCCEEEEE
Confidence 468999865432 24577788899999998765
No 374
>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}
Probab=61.01 E-value=12 Score=31.95 Aligned_cols=32 Identities=16% Similarity=0.245 Sum_probs=23.3
Q ss_pred CceeEEeeeehhhccccHHHHHHHHHHhccCCcEEEEEe
Q psy1420 167 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 205 (241)
Q Consensus 167 ~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 205 (241)
..+|+++.+.+- ..++.+.++|+++|+++...
T Consensus 213 ~~~d~vi~~~g~-------~~~~~~~~~l~~~G~iv~~g 244 (333)
T 1wly_A 213 KGVDVVYDSIGK-------DTLQKSLDCLRPRGMCAAYG 244 (333)
T ss_dssp CCEEEEEECSCT-------TTHHHHHHTEEEEEEEEECC
T ss_pred CCCeEEEECCcH-------HHHHHHHHhhccCCEEEEEe
Confidence 368999865542 34677888999999987653
No 375
>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}
Probab=60.61 E-value=6.2 Score=34.13 Aligned_cols=32 Identities=9% Similarity=0.079 Sum_probs=23.9
Q ss_pred ceeEEeeeehhhccccHHHHHHHHHHhccCCcEEEEEe
Q psy1420 168 SYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 205 (241)
Q Consensus 168 ~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 205 (241)
.+|+|+.+.+. ...++.+.+.|+++|+++...
T Consensus 238 ~~D~vi~~~g~------~~~~~~~~~~l~~~G~iv~~g 269 (347)
T 2hcy_A 238 GAHGVINVSVS------EAAIEASTRYVRANGTTVLVG 269 (347)
T ss_dssp CEEEEEECSSC------HHHHHHHTTSEEEEEEEEECC
T ss_pred CCCEEEECCCc------HHHHHHHHHHHhcCCEEEEEe
Confidence 68999865442 246788889999999988653
No 376
>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1
Probab=59.76 E-value=7.6 Score=34.16 Aligned_cols=32 Identities=25% Similarity=0.245 Sum_probs=23.3
Q ss_pred ceeEEeeeehhhccccHHHHHHHHHHhccCCcEEEEEe
Q psy1420 168 SYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 205 (241)
Q Consensus 168 ~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 205 (241)
.+|+|+.+.+- ...++.+.++|+|+|++++..
T Consensus 267 g~Dvvid~~g~------~~~~~~~~~~l~~~G~iv~~G 298 (380)
T 1vj0_A 267 GADFILEATGD------SRALLEGSELLRRGGFYSVAG 298 (380)
T ss_dssp CEEEEEECSSC------TTHHHHHHHHEEEEEEEEECC
T ss_pred CCcEEEECCCC------HHHHHHHHHHHhcCCEEEEEe
Confidence 69999865432 135677888999999988653
No 377
>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}
Probab=58.48 E-value=9.8 Score=33.02 Aligned_cols=31 Identities=10% Similarity=0.074 Sum_probs=23.2
Q ss_pred CceeEEeeeehhhccccHHHHHHHHHHhccCCcEEEEE
Q psy1420 167 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCL 204 (241)
Q Consensus 167 ~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~ 204 (241)
..+|+|+.+.+- ..+..+.+.|+++|++++.
T Consensus 234 ~g~Dvvid~~g~-------~~~~~~~~~l~~~G~iv~~ 264 (353)
T 4dup_A 234 QGVDIILDMIGA-------AYFERNIASLAKDGCLSII 264 (353)
T ss_dssp SCEEEEEESCCG-------GGHHHHHHTEEEEEEEEEC
T ss_pred CCceEEEECCCH-------HHHHHHHHHhccCCEEEEE
Confidence 469999876543 2466778899999998864
No 378
>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*
Probab=57.58 E-value=16 Score=31.71 Aligned_cols=32 Identities=13% Similarity=0.104 Sum_probs=23.4
Q ss_pred CceeEEeeeehhhccccHHHHHHHHHHhccCCcEEEEEe
Q psy1420 167 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 205 (241)
Q Consensus 167 ~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 205 (241)
..+|+++.+.+- ..+..+.++|+++|++++..
T Consensus 230 ~~~d~vi~~~G~-------~~~~~~~~~l~~~G~iv~~G 261 (354)
T 2j8z_A 230 AGVNLILDCIGG-------SYWEKNVNCLALDGRWVLYG 261 (354)
T ss_dssp SCEEEEEESSCG-------GGHHHHHHHEEEEEEEEECC
T ss_pred CCceEEEECCCc-------hHHHHHHHhccCCCEEEEEe
Confidence 469999876543 13666788999999988754
No 379
>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*
Probab=57.57 E-value=28 Score=29.72 Aligned_cols=33 Identities=18% Similarity=0.213 Sum_probs=22.1
Q ss_pred CceeEEeeeehhhccccHHHHHHHHHHhccCCcEEEEEe
Q psy1420 167 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 205 (241)
Q Consensus 167 ~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 205 (241)
..+|.++...+ -...+....+.|+++|++++..
T Consensus 231 ~g~d~~~~~~~------~~~~~~~~~~~l~~~G~~v~~g 263 (348)
T 4eez_A 231 LGVQSAIVCAV------ARIAFEQAVASLKPMGKMVAVA 263 (348)
T ss_dssp SCEEEEEECCS------CHHHHHHHHHTEEEEEEEEECC
T ss_pred CCceEEEEecc------CcchhheeheeecCCceEEEEe
Confidence 35677664322 1346777888999999988753
No 380
>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*
Probab=55.50 E-value=7.6 Score=33.55 Aligned_cols=37 Identities=24% Similarity=0.508 Sum_probs=30.0
Q ss_pred cccHHHHHHHHHHhccCCcEEEEEecCH---HHHHHHHHH
Q psy1420 181 VTRIDKALSEAYRVLKPGGRFLCLEFSH---EEFKSMIES 217 (241)
Q Consensus 181 ~~~~~~~l~~~~~~LkpgG~l~i~~~~~---~~~~~~l~~ 217 (241)
+...+.+|..+.++|+|||++.+++|.. .-+++.+++
T Consensus 221 l~~l~~~l~~~~~~l~~ggr~~visfhsledr~vk~~~~~ 260 (301)
T 1m6y_A 221 LENLKEFLKKAEDLLNPGGRIVVISFHSLEDRIVKETFRN 260 (301)
T ss_dssp HHHHHHHHHHGGGGEEEEEEEEEEESSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCCCCEEEEEecCcHHHHHHHHHhhc
Confidence 3456789999999999999999999887 556666665
No 381
>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A*
Probab=54.94 E-value=16 Score=31.45 Aligned_cols=31 Identities=6% Similarity=0.046 Sum_probs=24.1
Q ss_pred ceeEEeeeehhhccccHHHHHHHHHHhccCCcEEEEEe
Q psy1420 168 SYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 205 (241)
Q Consensus 168 ~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 205 (241)
.+|+++.+.+- ..+..+.++|+++|++++..
T Consensus 230 ~~d~vi~~~G~-------~~~~~~~~~l~~~G~iv~~G 260 (357)
T 2zb4_A 230 GVDVYFDNVGG-------NISDTVISQMNENSHIILCG 260 (357)
T ss_dssp CEEEEEESCCH-------HHHHHHHHTEEEEEEEEECC
T ss_pred CCCEEEECCCH-------HHHHHHHHHhccCcEEEEEC
Confidence 68999876551 56788889999999988653
No 382
>3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A
Probab=54.41 E-value=42 Score=30.93 Aligned_cols=43 Identities=14% Similarity=0.064 Sum_probs=30.9
Q ss_pred CCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHH
Q psy1420 44 DTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANA 117 (241)
Q Consensus 44 ~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~ 117 (241)
..+++|+=||.|..+ .-+-. .....+.++|+++.+.+..+.+.
T Consensus 88 ~~~viDLFaG~GGls-------------lG~~~------------------aG~~~v~avE~d~~A~~ty~~N~ 130 (482)
T 3me5_A 88 AFRFIDLFAGIGGIR-------------RGFES------------------IGGQCVFTSEWNKHAVRTYKANH 130 (482)
T ss_dssp SEEEEEESCTTSHHH-------------HHHHT------------------TTEEEEEEECCCHHHHHHHHHHS
T ss_pred cceEEEecCCccHHH-------------HHHHH------------------CCCEEEEEEeCCHHHHHHHHHhc
Confidence 468999999999987 22221 01234789999999888877665
No 383
>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*
Probab=53.29 E-value=6.5 Score=34.24 Aligned_cols=31 Identities=19% Similarity=0.263 Sum_probs=20.3
Q ss_pred ceeEEeeeehhhccccHHHHHHHHHHhccCCcEEEEE
Q psy1420 168 SYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCL 204 (241)
Q Consensus 168 ~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~ 204 (241)
.+|+|+.+.+-. ..++...++|+|+|+++..
T Consensus 244 g~D~vid~~g~~------~~~~~~~~~l~~~G~iv~~ 274 (357)
T 2cf5_A 244 SLDYVIDTVPVH------HALEPYLSLLKLDGKLILM 274 (357)
T ss_dssp TEEEEEECCCSC------CCSHHHHTTEEEEEEEEEC
T ss_pred CCCEEEECCCCh------HHHHHHHHHhccCCEEEEe
Confidence 589888654321 1244566788999988764
No 384
>1jdq_A TM006 protein, hypothetical protein TM0983; structural genomics; NMR {Thermotoga maritima} SCOP: d.68.3.3
Probab=53.28 E-value=58 Score=23.11 Aligned_cols=50 Identities=16% Similarity=0.125 Sum_probs=33.7
Q ss_pred HHHHHHhccCCcEEEEEecCH---HHHHHHHHHCCCceEEEEEecCceeEEEe
Q psy1420 188 LSEAYRVLKPGGRFLCLEFSH---EEFKSMIESAGFQYVTYENLTFGVVAIHS 237 (241)
Q Consensus 188 l~~~~~~LkpgG~l~i~~~~~---~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~ 237 (241)
.....+-|++|..|.+..-.. +.+..++++.|++++..+....|...+++
T Consensus 43 tkkaL~~l~~Ge~L~Vl~dd~~a~~dI~~~~~~~G~~v~~~e~~~~g~~~i~I 95 (98)
T 1jdq_A 43 TKRALQNMKPGEILEVWIDYPMSKERIPETVKKLGHEVLEIEEVGPSEWKIYI 95 (98)
T ss_dssp HHHHHHTCCTTCEEEEEESSCTHHHHHHHHHHHSSCCEEEEEECSSSCEEEEE
T ss_pred HHHHHHhCCCCCEEEEEECCccHHHHHHHHHHHCCCEEEEEEEecCCEEEEEE
Confidence 344455678998776653222 89999999999999877654235544444
No 385
>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9
Probab=51.33 E-value=62 Score=22.91 Aligned_cols=51 Identities=14% Similarity=0.150 Sum_probs=28.1
Q ss_pred CceeEEeeeehhhccccHHHHHHHHHHhccCCcEEEEEecCHHHHHHHHHHCCCce
Q psy1420 167 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHEEFKSMIESAGFQY 222 (241)
Q Consensus 167 ~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~l~~~Gf~~ 222 (241)
...|+|+.+-.-. .....+..+.+.++++ .+++... .....+.+++.|...
T Consensus 68 ~~~d~vi~~~~~~---~~~~~~~~~~~~~~~~-~ii~~~~-~~~~~~~l~~~g~~~ 118 (140)
T 1lss_A 68 EDADMYIAVTGKE---EVNLMSSLLAKSYGIN-KTIARIS-EIEYKDVFERLGVDV 118 (140)
T ss_dssp TTCSEEEECCSCH---HHHHHHHHHHHHTTCC-CEEEECS-STTHHHHHHHTTCSE
T ss_pred ccCCEEEEeeCCc---hHHHHHHHHHHHcCCC-EEEEEec-CHhHHHHHHHcCCCE
Confidence 3578888653221 1223444555667775 4544333 334456788888753
No 386
>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}
Probab=49.44 E-value=23 Score=30.07 Aligned_cols=32 Identities=16% Similarity=0.087 Sum_probs=23.0
Q ss_pred CceeEEeeeehhhccccHHHHHHHHHHhccCCcEEEEEe
Q psy1420 167 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 205 (241)
Q Consensus 167 ~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 205 (241)
..+|+|+.+-+- ..+..+.++|+++|+++...
T Consensus 214 ~g~D~v~d~~g~-------~~~~~~~~~l~~~G~iv~~g 245 (321)
T 3tqh_A 214 TPVDAVIDLVGG-------DVGIQSIDCLKETGCIVSVP 245 (321)
T ss_dssp SCEEEEEESSCH-------HHHHHHGGGEEEEEEEEECC
T ss_pred cCCCEEEECCCc-------HHHHHHHHhccCCCEEEEeC
Confidence 468999865432 23377889999999988753
No 387
>1ej6_A Lambda2; icosahedral, non-equivalence, dsRNA virus, methylase, methyltransferase, guanylyltransferase, zinc finger, icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1 PDB: 2cse_U
Probab=49.11 E-value=9.8 Score=38.81 Aligned_cols=50 Identities=18% Similarity=0.105 Sum_probs=37.3
Q ss_pred CCeeEEecccCCCCCC-CCceeEEeeeehhhc-----cccHHHHHHHHHHhccCCc
Q psy1420 150 PRLRFLEANAEELPIE-SDSYSAYTIAFGIRN-----VTRIDKALSEAYRVLKPGG 199 (241)
Q Consensus 150 ~~~~~~~~d~~~~~~~-~~~~D~V~~~~~l~~-----~~~~~~~l~~~~~~LkpgG 199 (241)
....+++.|.....+- ..++|.|.|.++|.. -.+....++.+.+.+++.|
T Consensus 863 ~~T~f~~~DyL~~~~~~~~~~D~vt~i~SLGAA~A~a~~tl~~~~~q~l~~~~~~~ 918 (1289)
T 1ej6_A 863 VRTTFLELDYLSDGWITGVRGDIVTCMLSLGAAAAGKSMTFDAAFQQLIKVLSKST 918 (1289)
T ss_dssp SCEEEEESCTTSSSCGGGCCCSEEEECSCHHHHHHHHTCCHHHHHHHHHHHHHTSC
T ss_pred ccceeeEccccccceeecCCCcEEEEEeechhhhhccCCcHHHHHHHHHHHHHhcC
Confidence 4588999998876543 457899999988863 2467788888888777765
No 388
>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A
Probab=48.85 E-value=26 Score=31.54 Aligned_cols=31 Identities=13% Similarity=0.128 Sum_probs=23.7
Q ss_pred CceeEEeeeehhhccccHHHHHHHHHHhccCCcEEEEE
Q psy1420 167 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCL 204 (241)
Q Consensus 167 ~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~ 204 (241)
..+|+|+.+-+- ..+..+.++|+++|++++.
T Consensus 313 ~g~Dvvid~~G~-------~~~~~~~~~l~~~G~iv~~ 343 (456)
T 3krt_A 313 EDIDIVFEHPGR-------ETFGASVFVTRKGGTITTC 343 (456)
T ss_dssp CCEEEEEECSCH-------HHHHHHHHHEEEEEEEEES
T ss_pred CCCcEEEEcCCc-------hhHHHHHHHhhCCcEEEEE
Confidence 479999865432 4677788899999998874
No 389
>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*
Probab=48.31 E-value=1.2e+02 Score=26.70 Aligned_cols=43 Identities=21% Similarity=0.323 Sum_probs=30.1
Q ss_pred CCceeEEeeeehhh-ccccHHHHHHHHHHhccCCcEEEEEecCH
Q psy1420 166 SDSYSAYTIAFGIR-NVTRIDKALSEAYRVLKPGGRFLCLEFSH 208 (241)
Q Consensus 166 ~~~~D~V~~~~~l~-~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 208 (241)
...||+|+...--+ ........|..+.+.|+|||.+++.--..
T Consensus 99 ~~~~d~v~~~~Pk~k~~~~~~~~l~~~~~~l~~g~~i~~~g~~~ 142 (381)
T 3dmg_A 99 AGAYDLVVLALPAGRGTAYVQASLVAAARALRMGGRLYLAGDKN 142 (381)
T ss_dssp TTCEEEEEEECCGGGCHHHHHHHHHHHHHHEEEEEEEEEEEEGG
T ss_pred cCCCCEEEEECCcchhHHHHHHHHHHHHHhCCCCCEEEEEEccH
Confidence 46799998644321 11234678889999999999998876444
No 390
>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans}
Probab=47.06 E-value=21 Score=30.77 Aligned_cols=31 Identities=13% Similarity=0.220 Sum_probs=23.5
Q ss_pred CceeEEeeeehhhccccHHHHHHHHHHhccCCcEEEEE
Q psy1420 167 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCL 204 (241)
Q Consensus 167 ~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~ 204 (241)
..+|+|+.+.+- ..+..+.+.|+++|+++..
T Consensus 215 ~g~D~vid~~g~-------~~~~~~~~~l~~~G~iv~~ 245 (343)
T 3gaz_A 215 QGFDLVYDTLGG-------PVLDASFSAVKRFGHVVSC 245 (343)
T ss_dssp SCEEEEEESSCT-------HHHHHHHHHEEEEEEEEES
T ss_pred CCceEEEECCCc-------HHHHHHHHHHhcCCeEEEE
Confidence 469999865441 4677888899999998864
No 391
>3iei_A Leucine carboxyl methyltransferase 1; LCMT-1, S-adenosyl-L-methionine; HET: SAH MES; 1.90A {Homo sapiens} PDB: 3p71_T* 3mnt_A* 3o7w_A*
Probab=46.82 E-value=1.4e+02 Score=25.82 Aligned_cols=78 Identities=15% Similarity=0.155 Sum_probs=49.0
Q ss_pred CCeeEEecccCCC----------CCCCCceeEEeeeehhhcccc--HHHHHHHHHHhccCCcEEEEEecCH---------
Q psy1420 150 PRLRFLEANAEEL----------PIESDSYSAYTIAFGIRNVTR--IDKALSEAYRVLKPGGRFLCLEFSH--------- 208 (241)
Q Consensus 150 ~~~~~~~~d~~~~----------~~~~~~~D~V~~~~~l~~~~~--~~~~l~~~~~~LkpgG~l~i~~~~~--------- 208 (241)
++..++..|+.+. .+..+..-++++=.++.+++. ....++.+.+.. |+|.+++.+...
T Consensus 163 ~~y~~v~~DL~d~~~l~~~L~~~g~d~~~Ptl~iaEGvL~YL~~~~~~~ll~~ia~~f-~~~~~i~yE~i~p~d~fg~~M 241 (334)
T 3iei_A 163 KRYAVIGADLRDLSELEEKLKKCNMNTQLPTLLIAECVLVYMTPEQSANLLKWAANSF-ERAMFINYEQVNMGDRFGQIM 241 (334)
T ss_dssp SSEEEEECCTTCHHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC-SSEEEEEEEECCTTSHHHHHH
T ss_pred CceEEEccccccchhHHHHHHhcCCCCCCCEEEEEchhhhCCCHHHHHHHHHHHHHhC-CCceEEEEeccCCCCHHHHHH
Confidence 5677888887653 122334456666566666653 467777777766 456655555321
Q ss_pred --------------------HHHHHHHHHCCCceEEEEEe
Q psy1420 209 --------------------EEFKSMIESAGFQYVTYENL 228 (241)
Q Consensus 209 --------------------~~~~~~l~~~Gf~~~~~~~~ 228 (241)
+...+.+.++||+.++..++
T Consensus 242 ~~~l~~~g~pl~sl~~y~t~~~~~~r~~~~Gw~~~~~~d~ 281 (334)
T 3iei_A 242 IENLRRRQCDLAGVETCKSLESQKERLLSNGWETASAVDM 281 (334)
T ss_dssp HHHHHTTTCCCTTGGGGGCHHHHHHHHHTTTCSEEEEEEH
T ss_pred HHHHHHhCCCCcccccCCCHHHHHHHHHHcCCCcceeecH
Confidence 66678888899987665544
No 392
>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}
Probab=46.43 E-value=16 Score=31.54 Aligned_cols=33 Identities=15% Similarity=0.265 Sum_probs=23.8
Q ss_pred CCceeEEeeeehhhccccHHHHHHHHHHhccCCcEEEEE
Q psy1420 166 SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCL 204 (241)
Q Consensus 166 ~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~ 204 (241)
.+.+|+|+.+.+ -...++.+.++|+|+|+++..
T Consensus 215 ~~g~Dvv~d~~g------~~~~~~~~~~~l~~~G~iv~~ 247 (346)
T 3fbg_A 215 IELVDYVFCTFN------TDMYYDDMIQLVKPRGHIATI 247 (346)
T ss_dssp CCCEEEEEESSC------HHHHHHHHHHHEEEEEEEEES
T ss_pred CCCccEEEECCC------chHHHHHHHHHhccCCEEEEE
Confidence 346999986433 234567888999999998653
No 393
>2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens}
Probab=46.20 E-value=24 Score=30.29 Aligned_cols=44 Identities=5% Similarity=-0.032 Sum_probs=31.4
Q ss_pred CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCC---ceeecCChHhHHHHHHHH
Q psy1420 42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQF---PNQIDIPNPRLRFLEANA 117 (241)
Q Consensus 42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~D~s~~~~~~~~~~~ 117 (241)
+...+++|+=||.|..+ ..+.. .+.. +.++|+++.+.+..+.+.
T Consensus 14 ~~~~~vidLFaG~GG~~-------------~g~~~-------------------aG~~~~~v~a~E~d~~a~~ty~~N~ 60 (295)
T 2qrv_A 14 RKPIRVLSLFDGIATGL-------------LVLKD-------------------LGIQVDRYIASEVCEDSITVGMVRH 60 (295)
T ss_dssp CCCEEEEEETCTTTHHH-------------HHHHH-------------------TTBCEEEEEEECCCHHHHHHHHHHT
T ss_pred CCCCEEEEeCcCccHHH-------------HHHHH-------------------CCCccceEEEEECCHHHHHHHHHhC
Confidence 56678999999999887 22222 1222 589999999888776654
No 394
>1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A*
Probab=45.81 E-value=18 Score=30.81 Aligned_cols=31 Identities=16% Similarity=0.202 Sum_probs=23.3
Q ss_pred CceeEEeeeehhhccccHHHHHHHHHHhccCCcEEEEE
Q psy1420 167 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCL 204 (241)
Q Consensus 167 ~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~ 204 (241)
..+|+|+.+.+- ..+..+.++++++|++++.
T Consensus 216 ~~~d~vid~~g~-------~~~~~~~~~l~~~G~iv~~ 246 (330)
T 1tt7_A 216 QQWQGAVDPVGG-------KQLASLLSKIQYGGSVAVS 246 (330)
T ss_dssp CCEEEEEESCCT-------HHHHHHHTTEEEEEEEEEC
T ss_pred CCccEEEECCcH-------HHHHHHHHhhcCCCEEEEE
Confidence 468999865431 3577888999999998865
No 395
>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1
Probab=44.13 E-value=24 Score=29.92 Aligned_cols=31 Identities=16% Similarity=0.247 Sum_probs=22.8
Q ss_pred CceeEEeeeehhhccccHHHHHHHHHHhccCCcEEEEE
Q psy1420 167 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCL 204 (241)
Q Consensus 167 ~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~ 204 (241)
..+|+|+.+.+- ..+..+.++++++|++++.
T Consensus 215 ~~~d~vid~~g~-------~~~~~~~~~l~~~G~~v~~ 245 (328)
T 1xa0_A 215 QRWAAAVDPVGG-------RTLATVLSRMRYGGAVAVS 245 (328)
T ss_dssp CCEEEEEECSTT-------TTHHHHHHTEEEEEEEEEC
T ss_pred CcccEEEECCcH-------HHHHHHHHhhccCCEEEEE
Confidence 469999865442 1466778899999998875
No 396
>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A
Probab=42.82 E-value=7.2 Score=34.34 Aligned_cols=21 Identities=29% Similarity=0.252 Sum_probs=15.6
Q ss_pred CCCceeecCChHhHHHHHHHH
Q psy1420 97 RQFPNQIDIPNPRLRFLEANA 117 (241)
Q Consensus 97 ~~~~~~~D~s~~~~~~~~~~~ 117 (241)
+.+++.+|.++...+.+.+..
T Consensus 190 Ga~V~v~dr~~~r~~~~~~~~ 210 (361)
T 1pjc_A 190 GAQVQIFDINVERLSYLETLF 210 (361)
T ss_dssp TCEEEEEESCHHHHHHHHHHH
T ss_pred CCEEEEEeCCHHHHHHHHHhh
Confidence 347999999988777765543
No 397
>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D
Probab=41.92 E-value=8.2 Score=32.57 Aligned_cols=30 Identities=20% Similarity=0.296 Sum_probs=22.0
Q ss_pred CceeEEeeeehhhccccHHHHHHHHHHhccCCcEEEEE
Q psy1420 167 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCL 204 (241)
Q Consensus 167 ~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~ 204 (241)
..+|+|+. .+- ..++.+.+.|+++|+++..
T Consensus 188 ~~~d~vid-~g~-------~~~~~~~~~l~~~G~~v~~ 217 (302)
T 1iz0_A 188 GGLDLVLE-VRG-------KEVEESLGLLAHGGRLVYI 217 (302)
T ss_dssp TSEEEEEE-CSC-------TTHHHHHTTEEEEEEEEEC
T ss_pred cCceEEEE-CCH-------HHHHHHHHhhccCCEEEEE
Confidence 46899986 432 2467788899999998764
No 398
>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}
Probab=41.78 E-value=8.4 Score=33.96 Aligned_cols=38 Identities=8% Similarity=0.021 Sum_probs=19.9
Q ss_pred ceeEEeeeehhhccccHHHHHHHHHHhccCCcEEEEEe
Q psy1420 168 SYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 205 (241)
Q Consensus 168 ~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 205 (241)
..|+|+.+-.......+.-..+...+.|+|||.++.+.
T Consensus 229 ~~DvVi~~~g~~~~~~~~li~~~~l~~mk~gg~iV~v~ 266 (369)
T 2eez_A 229 HADLLIGAVLVPGAKAPKLVTRDMLSLMKEGAVIVDVA 266 (369)
T ss_dssp HCSEEEECCC-------CCSCHHHHTTSCTTCEEEECC
T ss_pred CCCEEEECCCCCccccchhHHHHHHHhhcCCCEEEEEe
Confidence 46888765443211111112355667789999876543
No 399
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=40.56 E-value=1e+02 Score=22.36 Aligned_cols=89 Identities=12% Similarity=0.056 Sum_probs=52.4
Q ss_pred CCCceeecCChHhHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCC----CCCCceeEE
Q psy1420 97 RQFPNQIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELP----IESDSYSAY 172 (241)
Q Consensus 97 ~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~~D~V 172 (241)
+..++++|.++..++.+.. . .+.++.+|..... ..-...|+|
T Consensus 30 g~~v~vid~~~~~~~~~~~--~--------------------------------g~~~i~gd~~~~~~l~~a~i~~ad~v 75 (140)
T 3fwz_A 30 DIPLVVIETSRTRVDELRE--R--------------------------------GVRAVLGNAANEEIMQLAHLECAKWL 75 (140)
T ss_dssp TCCEEEEESCHHHHHHHHH--T--------------------------------TCEEEESCTTSHHHHHHTTGGGCSEE
T ss_pred CCCEEEEECCHHHHHHHHH--c--------------------------------CCCEEECCCCCHHHHHhcCcccCCEE
Confidence 5689999999988776653 1 2456667765432 112467888
Q ss_pred eeeehhhccccHHHHHHHHHHhccCCcEEEEEecCHHHHHHHHHHCCCceE
Q psy1420 173 TIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHEEFKSMIESAGFQYV 223 (241)
Q Consensus 173 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~l~~~Gf~~~ 223 (241)
++...-. .....+....+.+.|+..++..... .+..+.+++.|-..+
T Consensus 76 i~~~~~~---~~n~~~~~~a~~~~~~~~iiar~~~-~~~~~~l~~~G~d~v 122 (140)
T 3fwz_A 76 ILTIPNG---YEAGEIVASARAKNPDIEIIARAHY-DDEVAYITERGANQV 122 (140)
T ss_dssp EECCSCH---HHHHHHHHHHHHHCSSSEEEEEESS-HHHHHHHHHTTCSEE
T ss_pred EEECCCh---HHHHHHHHHHHHHCCCCeEEEEECC-HHHHHHHHHCCCCEE
Confidence 7532211 1112233455667788887665544 445577888887643
No 400
>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*
Probab=39.61 E-value=71 Score=27.37 Aligned_cols=32 Identities=22% Similarity=0.150 Sum_probs=23.6
Q ss_pred ceeEEeeeehhhccccHHHHHHHHHHhccCCcEEEEEe
Q psy1420 168 SYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 205 (241)
Q Consensus 168 ~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 205 (241)
.+|+|+.+.+- ...++.+.++|+|+|+++...
T Consensus 242 g~Dvvid~~g~------~~~~~~~~~~l~~~G~iv~~g 273 (357)
T 2b5w_A 242 QMDFIYEATGF------PKHAIQSVQALAPNGVGALLG 273 (357)
T ss_dssp CEEEEEECSCC------HHHHHHHHHHEEEEEEEEECC
T ss_pred CCCEEEECCCC------hHHHHHHHHHHhcCCEEEEEe
Confidence 69999865432 235778889999999988753
No 401
>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*
Probab=38.62 E-value=35 Score=29.54 Aligned_cols=33 Identities=12% Similarity=0.135 Sum_probs=23.4
Q ss_pred CceeEEeeeehhhccccHHHHH-HHHHHhccCCcEEEEEe
Q psy1420 167 DSYSAYTIAFGIRNVTRIDKAL-SEAYRVLKPGGRFLCLE 205 (241)
Q Consensus 167 ~~~D~V~~~~~l~~~~~~~~~l-~~~~~~LkpgG~l~i~~ 205 (241)
..+|+|+.+.+.. ..+ +.+.+.|+++|++++..
T Consensus 245 ~~~d~vid~~g~~------~~~~~~~~~~l~~~G~iv~~g 278 (366)
T 2cdc_A 245 GKFDVIIDATGAD------VNILGNVIPLLGRNGVLGLFG 278 (366)
T ss_dssp CCEEEEEECCCCC------THHHHHHGGGEEEEEEEEECS
T ss_pred CCCCEEEECCCCh------HHHHHHHHHHHhcCCEEEEEe
Confidence 4689998655431 145 77889999999988653
No 402
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=38.42 E-value=1.8e+02 Score=27.49 Aligned_cols=77 Identities=14% Similarity=0.301 Sum_probs=46.8
Q ss_pred CCeeEEecccCCCC----------C-CCCceeEEeeeehhhccc--cHHHHHHHHHHhccCCcEEEEEecC---------
Q psy1420 150 PRLRFLEANAEELP----------I-ESDSYSAYTIAFGIRNVT--RIDKALSEAYRVLKPGGRFLCLEFS--------- 207 (241)
Q Consensus 150 ~~~~~~~~d~~~~~----------~-~~~~~D~V~~~~~l~~~~--~~~~~l~~~~~~LkpgG~l~i~~~~--------- 207 (241)
++..++..|+.+.. + ..+..-++++=.++.+++ ...++|+.+.+. |+|.+++.+.-
T Consensus 188 ~~y~~v~~Dl~~~~~~~~~l~~~g~~d~~~ptl~i~Egvl~Yl~~~~~~~ll~~~~~~--~~~~~~~~e~~~~~~~~d~f 265 (695)
T 2zwa_A 188 PKYLARPCDLNDSKMFSTLLNECQLYDPNVVKVFVAEVSLAYMKPERSDSIIEATSKM--ENSHFIILEQLIPKGPFEPF 265 (695)
T ss_dssp SSEEEEECCTTCHHHHHHHHHHTTTTCTTEEEEEEEESSGGGSCHHHHHHHHHHHHTS--SSEEEEEEEECCTTCTTSHH
T ss_pred CCeeEEeCcCCCcHHHHHHHhhccCCCCCCCEEEeeeeEEEEcCHHHHHHHHHHHhhC--CCceEEEEEeecCCCCCChH
Confidence 36778888887641 1 223334455555666654 345777777754 67776665411
Q ss_pred -----------------------HHHHHHHHHHCCCceEEEEEe
Q psy1420 208 -----------------------HEEFKSMIESAGFQYVTYENL 228 (241)
Q Consensus 208 -----------------------~~~~~~~l~~~Gf~~~~~~~~ 228 (241)
.++..+.+.+.||+.+...++
T Consensus 266 ~~~m~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~Gw~~v~~~~~ 309 (695)
T 2zwa_A 266 SKQMLAHFKRNDSPLQSVLKYNTIESQVQRFNKLGFAYVNVGDM 309 (695)
T ss_dssp HHHHHHHHHHTTCCCCGGGTCCSHHHHHHHHHHTTCCEEEEEEH
T ss_pred HHHHHHHHHHcCCCCCccccCCCHHHHHHHHHHCCCCCcceeeH
Confidence 167788888999986655543
No 403
>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*
Probab=38.05 E-value=8.8 Score=34.02 Aligned_cols=19 Identities=32% Similarity=0.331 Sum_probs=14.4
Q ss_pred CCCceeecCChHhHHHHHH
Q psy1420 97 RQFPNQIDIPNPRLRFLEA 115 (241)
Q Consensus 97 ~~~~~~~D~s~~~~~~~~~ 115 (241)
+..+++.|.++...+.+.+
T Consensus 191 Ga~V~~~d~~~~~l~~~~~ 209 (377)
T 2vhw_A 191 GATVTVLDINIDKLRQLDA 209 (377)
T ss_dssp TCEEEEEESCHHHHHHHHH
T ss_pred CCEEEEEeCCHHHHHHHHH
Confidence 4479999999887766654
No 404
>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A
Probab=36.94 E-value=54 Score=26.65 Aligned_cols=78 Identities=10% Similarity=0.132 Sum_probs=45.1
Q ss_pred CCCceeecCChHhHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCC----------CC
Q psy1420 97 RQFPNQIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPI----------ES 166 (241)
Q Consensus 97 ~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~----------~~ 166 (241)
+.++..++.++..++...+... .++.++.+|+.+... .-
T Consensus 32 G~~V~~~~r~~~~~~~~~~~~~-------------------------------~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 80 (255)
T 4eso_A 32 GAEVLLTGRNESNIARIREEFG-------------------------------PRVHALRSDIADLNEIAVLGAAAGQTL 80 (255)
T ss_dssp TCEEEEEESCHHHHHHHHHHHG-------------------------------GGEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCEEEEEeCCHHHHHHHHHHhC-------------------------------CcceEEEccCCCHHHHHHHHHHHHHHh
Confidence 5678888888876665544432 245667777665320 01
Q ss_pred CceeEEeeeehhhccc--------c-----------HHHHHHHHHHhccCCcEEEEEe
Q psy1420 167 DSYSAYTIAFGIRNVT--------R-----------IDKALSEAYRVLKPGGRFLCLE 205 (241)
Q Consensus 167 ~~~D~V~~~~~l~~~~--------~-----------~~~~l~~~~~~LkpgG~l~i~~ 205 (241)
+++|+++.+-++.... + +-..++.+.+.++++|+++.+.
T Consensus 81 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~is 138 (255)
T 4eso_A 81 GAIDLLHINAGVSELEPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIREGGSIVFTS 138 (255)
T ss_dssp SSEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCEEEEEC
Confidence 3678888765443211 1 1234455666777788877654
No 405
>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}
Probab=34.35 E-value=12 Score=32.61 Aligned_cols=35 Identities=9% Similarity=0.089 Sum_probs=23.3
Q ss_pred CceeEEeeeehhhccccHHHHHHHHHHhccCCcEEEEEec
Q psy1420 167 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEF 206 (241)
Q Consensus 167 ~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 206 (241)
..+|+|+.+.+- ....+....++|+++|+++....
T Consensus 247 ~g~D~vid~~g~-----~~~~~~~~~~~l~~~G~iv~~g~ 281 (375)
T 2vn8_A 247 KPFDFILDNVGG-----STETWAPDFLKKWSGATYVTLVT 281 (375)
T ss_dssp CCBSEEEESSCT-----THHHHGGGGBCSSSCCEEEESCC
T ss_pred CCCCEEEECCCC-----hhhhhHHHHHhhcCCcEEEEeCC
Confidence 368999865432 22345667788999999887543
No 406
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*
Probab=34.30 E-value=2.2e+02 Score=25.24 Aligned_cols=88 Identities=10% Similarity=0.049 Sum_probs=53.2
Q ss_pred CCCceeecCChHhHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCC----CCCCceeEE
Q psy1420 97 RQFPNQIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELP----IESDSYSAY 172 (241)
Q Consensus 97 ~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~~D~V 172 (241)
+..++.+|.++..++.++.. .+.++.+|+.... ..-...|+|
T Consensus 27 g~~vvvId~d~~~v~~~~~~----------------------------------g~~vi~GDat~~~~L~~agi~~A~~v 72 (413)
T 3l9w_A 27 GVKMVVLDHDPDHIETLRKF----------------------------------GMKVFYGDATRMDLLESAGAAKAEVL 72 (413)
T ss_dssp TCCEEEEECCHHHHHHHHHT----------------------------------TCCCEESCTTCHHHHHHTTTTTCSEE
T ss_pred CCCEEEEECCHHHHHHHHhC----------------------------------CCeEEEcCCCCHHHHHhcCCCccCEE
Confidence 56899999999988877532 2446777776542 113457887
Q ss_pred eeeehhhccccHHHHHHHHHHhccCCcEEEEEecCHHHHHHHHHHCCCce
Q psy1420 173 TIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHEEFKSMIESAGFQY 222 (241)
Q Consensus 173 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~l~~~Gf~~ 222 (241)
++...= ......+....+.+.|+..+++...... -...|.++|-..
T Consensus 73 iv~~~~---~~~n~~i~~~ar~~~p~~~Iiara~~~~-~~~~L~~~Gad~ 118 (413)
T 3l9w_A 73 INAIDD---PQTNLQLTEMVKEHFPHLQIIARARDVD-HYIRLRQAGVEK 118 (413)
T ss_dssp EECCSS---HHHHHHHHHHHHHHCTTCEEEEEESSHH-HHHHHHHTTCSS
T ss_pred EECCCC---hHHHHHHHHHHHHhCCCCeEEEEECCHH-HHHHHHHCCCCE
Confidence 754321 1223344555667788888877655543 344556676543
No 407
>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9
Probab=33.97 E-value=1.4e+02 Score=21.88 Aligned_cols=67 Identities=4% Similarity=-0.083 Sum_probs=36.7
Q ss_pred CeeEEecccCCCC----CCCCceeEEeeeehhhccccHHHHHHHHHHhccCCcEEEEEecCHHHHHHHHHHCCCc
Q psy1420 151 RLRFLEANAEELP----IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHEEFKSMIESAGFQ 221 (241)
Q Consensus 151 ~~~~~~~d~~~~~----~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~l~~~Gf~ 221 (241)
.+.++.+|..... ..-+..|+|++...- ......+....+.+.|...++..... .+..+.+++.|-.
T Consensus 50 ~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~---d~~n~~~~~~a~~~~~~~~ii~~~~~-~~~~~~l~~~G~~ 120 (153)
T 1id1_A 50 NADVIPGDSNDSSVLKKAGIDRCRAILALSDN---DADNAFVVLSAKDMSSDVKTVLAVSD-SKNLNKIKMVHPD 120 (153)
T ss_dssp TCEEEESCTTSHHHHHHHTTTTCSEEEECSSC---HHHHHHHHHHHHHHTSSSCEEEECSS-GGGHHHHHTTCCS
T ss_pred CCeEEEcCCCCHHHHHHcChhhCCEEEEecCC---hHHHHHHHHHHHHHCCCCEEEEEECC-HHHHHHHHHcCCC
Confidence 3567777765431 112457888764321 12234445556667777777664433 3344556777765
No 408
>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A
Probab=33.05 E-value=55 Score=29.10 Aligned_cols=31 Identities=13% Similarity=0.053 Sum_probs=23.3
Q ss_pred CceeEEeeeehhhccccHHHHHHHHHHhccCCcEEEEE
Q psy1420 167 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCL 204 (241)
Q Consensus 167 ~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~ 204 (241)
..+|+|+.+.+- ..+....++|+++|+++..
T Consensus 305 ~g~Dvvid~~G~-------~~~~~~~~~l~~~G~iv~~ 335 (447)
T 4a0s_A 305 REPDIVFEHTGR-------VTFGLSVIVARRGGTVVTC 335 (447)
T ss_dssp SCCSEEEECSCH-------HHHHHHHHHSCTTCEEEES
T ss_pred CCceEEEECCCc-------hHHHHHHHHHhcCCEEEEE
Confidence 468999865442 3567778899999998875
No 409
>4gua_A Non-structural polyprotein; viral precursor polyprotein, protease, zinc-binding, hydrola; HET: MES; 2.85A {Sindbis virus}
Probab=32.16 E-value=69 Score=30.52 Aligned_cols=43 Identities=16% Similarity=0.308 Sum_probs=29.0
Q ss_pred CCceeEEeeee----hhhccc-------cHHHHHHHHHHhccCCcEEEEEecCH
Q psy1420 166 SDSYSAYTIAF----GIRNVT-------RIDKALSEAYRVLKPGGRFLCLEFSH 208 (241)
Q Consensus 166 ~~~~D~V~~~~----~l~~~~-------~~~~~l~~~~~~LkpgG~l~i~~~~~ 208 (241)
..+||+|+++- -.||.. ...-+-....++|+|||.+++..++-
T Consensus 219 ~~ryDlvfvn~~t~yr~HHyqQCeDHa~~l~ml~~~al~~l~pGGt~v~~~YGy 272 (670)
T 4gua_A 219 QARYDLVFINIGTKYRNHHFQQCEDHAATLKTLSRSALNCLNPGGTLVVKSYGY 272 (670)
T ss_dssp CCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCC
T ss_pred CCcccEEEEecCCCcccchHHHHHHHHHHHHHHhHHHHhhcCCCceEEEEEeec
Confidence 46999999863 223322 12344466778999999999887665
No 410
>3iht_A S-adenosyl-L-methionine methyl transferase; YP_165822.1, STR genomics, joint center for structural genomics, JCSG; HET: MSE SAM; 1.80A {Ruegeria pomeroyi dss-3}
Probab=31.63 E-value=58 Score=25.79 Aligned_cols=26 Identities=8% Similarity=0.014 Sum_probs=17.6
Q ss_pred HHHHHhhcCCCCCCeEEEEecCCCcch
Q psy1420 32 KDIFIDRLGPTHDTKLLDVAGGTDPLA 58 (241)
Q Consensus 32 ~~~~~~~l~~~~~~~vLdvG~G~G~~~ 58 (241)
.+.........+ +-|||+|-|+|.+-
T Consensus 30 L~~a~~~v~~~~-GpVlElGLGNGRTy 55 (174)
T 3iht_A 30 LEHAIAQTAGLS-GPVYELGLGNGRTY 55 (174)
T ss_dssp HHHHHHHTTTCC-SCEEEECCTTCHHH
T ss_pred HHHHHHHhcCCC-CceEEecCCCChhH
Confidence 344444444333 37999999999887
No 411
>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*
Probab=30.30 E-value=65 Score=25.73 Aligned_cols=22 Identities=5% Similarity=-0.300 Sum_probs=13.7
Q ss_pred CCCceeecCChHhHHHHHHHHh
Q psy1420 97 RQFPNQIDIPNPRLRFLEANAE 118 (241)
Q Consensus 97 ~~~~~~~D~s~~~~~~~~~~~~ 118 (241)
+..++.++.++...+...+.+.
T Consensus 29 g~~V~~~~r~~~~~~~~~~~l~ 50 (276)
T 1wma_A 29 SGDVVLTARDVTRGQAAVQQLQ 50 (276)
T ss_dssp SSEEEEEESSHHHHHHHHHHHH
T ss_pred CCeEEEEeCChHHHHHHHHHHH
Confidence 4568888887765555544443
No 412
>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*
Probab=28.57 E-value=2.2e+02 Score=22.66 Aligned_cols=82 Identities=10% Similarity=0.037 Sum_probs=46.6
Q ss_pred CCCceeecCChHhHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCCC----------CC
Q psy1420 97 RQFPNQIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPI----------ES 166 (241)
Q Consensus 97 ~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~----------~~ 166 (241)
+.+++.++.++...+.+.+... ..+ ..++.++.+|+.+... ..
T Consensus 33 G~~V~~~~r~~~~~~~~~~~~~-------------------------~~~--~~~~~~~~~D~~~~~~v~~~~~~~~~~~ 85 (266)
T 3oig_A 33 GARLIFTYAGERLEKSVHELAG-------------------------TLD--RNDSIILPCDVTNDAEIETCFASIKEQV 85 (266)
T ss_dssp TCEEEEEESSGGGHHHHHHHHH-------------------------TSS--SCCCEEEECCCSSSHHHHHHHHHHHHHH
T ss_pred CCEEEEecCchHHHHHHHHHHH-------------------------hcC--CCCceEEeCCCCCHHHHHHHHHHHHHHh
Confidence 4567888777666555555444 111 1256777888776420 01
Q ss_pred CceeEEeeeehhhc-------c-----ccH-----------HHHHHHHHHhccCCcEEEEEe
Q psy1420 167 DSYSAYTIAFGIRN-------V-----TRI-----------DKALSEAYRVLKPGGRFLCLE 205 (241)
Q Consensus 167 ~~~D~V~~~~~l~~-------~-----~~~-----------~~~l~~~~~~LkpgG~l~i~~ 205 (241)
+++|.++.+.++.. + .+. ...++.+...++++|+++.+.
T Consensus 86 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~is 147 (266)
T 3oig_A 86 GVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTEGGSIVTLT 147 (266)
T ss_dssp SCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEE
T ss_pred CCeeEEEEccccccccccccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhcCCCceEEEEe
Confidence 36788887654422 0 011 124456667778888887765
No 413
>1je3_A EC005, hypothetical 8.6 kDa protein in AMYA-FLIE intergenic region; mixed alpha-beta structure, structural genomics; NMR {Escherichia coli} SCOP: d.68.3.3
Probab=28.54 E-value=1.2e+02 Score=21.37 Aligned_cols=48 Identities=13% Similarity=0.042 Sum_probs=32.0
Q ss_pred HHHHHHhccCCcEEEEEecCH---HHHHHHHHHCCCceEEEEEecCceeEEE
Q psy1420 188 LSEAYRVLKPGGRFLCLEFSH---EEFKSMIESAGFQYVTYENLTFGVVAIH 236 (241)
Q Consensus 188 l~~~~~~LkpgG~l~i~~~~~---~~~~~~l~~~Gf~~~~~~~~~~~~~~~~ 236 (241)
.....+-|++|..|.+..-.. +.+..++++.|++++..+.- .|...+.
T Consensus 44 tkkaL~~l~~Ge~L~Vl~dd~~a~~dIp~~~~~~G~~v~~~e~~-~~~~~i~ 94 (97)
T 1je3_A 44 TLEAMPQLKKGEILEVVSDCPQSINNIPLDARNHGYTVLDIQQD-GPTIRYL 94 (97)
T ss_dssp HHHHTTTCCSSCEEEEEEBCSSSSCHHHHHHHHHTCSEEEEEEC-SSSEEEE
T ss_pred HHHHHHcCCCCCEEEEEECCcchHHHHHHHHHHCCCEEEEEEee-CCEEEEE
Confidence 344445678888776653222 88999999999998876543 4444443
No 414
>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0
Probab=28.39 E-value=1.7e+02 Score=23.73 Aligned_cols=55 Identities=5% Similarity=-0.039 Sum_probs=34.9
Q ss_pred CCCceeecCChHhHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCC-C--------C--C
Q psy1420 97 RQFPNQIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL-P--------I--E 165 (241)
Q Consensus 97 ~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~--------~--~ 165 (241)
+..++.++.++...+.+.+.+. ..+ ..++.++.+|+... . . .
T Consensus 36 G~~V~~~~r~~~~~~~~~~~l~-------------------------~~~--~~~~~~~~~Dl~~~~~~v~~~~~~~~~~ 88 (311)
T 3o26_A 36 GIMVVLTCRDVTKGHEAVEKLK-------------------------NSN--HENVVFHQLDVTDPIATMSSLADFIKTH 88 (311)
T ss_dssp TCEEEEEESCHHHHHHHHHHHH-------------------------TTT--CCSEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCEEEEEeCCHHHHHHHHHHHH-------------------------hcC--CCceEEEEccCCCcHHHHHHHHHHHHHh
Confidence 5678899988877666655554 111 13577888887764 2 0 0
Q ss_pred CCceeEEeeeehh
Q psy1420 166 SDSYSAYTIAFGI 178 (241)
Q Consensus 166 ~~~~D~V~~~~~l 178 (241)
.+++|+++.+-++
T Consensus 89 ~g~iD~lv~nAg~ 101 (311)
T 3o26_A 89 FGKLDILVNNAGV 101 (311)
T ss_dssp HSSCCEEEECCCC
T ss_pred CCCCCEEEECCcc
Confidence 1368998877654
No 415
>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}
Probab=28.18 E-value=2.6e+02 Score=23.32 Aligned_cols=22 Identities=18% Similarity=-0.049 Sum_probs=15.7
Q ss_pred CCCceeecCChHhHHHHHHHHh
Q psy1420 97 RQFPNQIDIPNPRLRFLEANAE 118 (241)
Q Consensus 97 ~~~~~~~D~s~~~~~~~~~~~~ 118 (241)
+..+..++.++...+...+.+.
T Consensus 32 G~~Vv~~~r~~~~~~~~~~~l~ 53 (319)
T 3ioy_A 32 GCKVAIADIRQDSIDKALATLE 53 (319)
T ss_dssp TCEEEEEESCHHHHHHHHHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHHH
Confidence 5578899998887766655544
No 416
>3iyl_W VP1; non-enveloped virus, membrane penetration protein, autocleav myristol group, icosahedral virus; HET: MYR; 3.30A {Grass carp reovirus} PDB: 3k1q_A
Probab=28.00 E-value=30 Score=35.61 Aligned_cols=49 Identities=10% Similarity=0.067 Sum_probs=37.4
Q ss_pred eeEEecccCCCCCC-CCceeEEeeeehhhc-----cccHHHHHHHHHHhccCCcE
Q psy1420 152 LRFLEANAEELPIE-SDSYSAYTIAFGIRN-----VTRIDKALSEAYRVLKPGGR 200 (241)
Q Consensus 152 ~~~~~~d~~~~~~~-~~~~D~V~~~~~l~~-----~~~~~~~l~~~~~~LkpgG~ 200 (241)
..+++.|....... ..++|.+.|.+.|.. -.+....++.+.+.+++.|.
T Consensus 872 T~yi~~DYl~~~~~~~~~~d~vtailSLGAA~a~a~~tl~~~l~~~l~~~~~~~v 926 (1299)
T 3iyl_W 872 TAYVQGDYSTAAFWNGIRCDSATAIFTIGAAAAAAGTDLIAFVQQLIPRIVAAGG 926 (1299)
T ss_dssp EEEEESCSSSGGGGSSCCCSEEEETTTHHHHHHHTTCCHHHHHHHHHHHHHHTTC
T ss_pred ceeEEeccccceeEecCCCCEEEEeeechhhhhhCCCcHHHHHHHHHHHHHhcCc
Confidence 78999998876533 457899999888763 34678888888888887764
No 417
>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}
Probab=27.50 E-value=1.7e+02 Score=22.75 Aligned_cols=72 Identities=7% Similarity=-0.047 Sum_probs=40.0
Q ss_pred CCCceeecCChHhHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCC----CCCCceeEE
Q psy1420 97 RQFPNQIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELP----IESDSYSAY 172 (241)
Q Consensus 97 ~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~~D~V 172 (241)
+..+..+|.++..++...... ...++.+|..... ..-...|+|
T Consensus 23 g~~v~vid~~~~~~~~l~~~~---------------------------------~~~~i~gd~~~~~~l~~a~i~~ad~v 69 (218)
T 3l4b_C 23 KYGVVIINKDRELCEEFAKKL---------------------------------KATIIHGDGSHKEILRDAEVSKNDVV 69 (218)
T ss_dssp TCCEEEEESCHHHHHHHHHHS---------------------------------SSEEEESCTTSHHHHHHHTCCTTCEE
T ss_pred CCeEEEEECCHHHHHHHHHHc---------------------------------CCeEEEcCCCCHHHHHhcCcccCCEE
Confidence 567999999988776644321 2456677765431 112357888
Q ss_pred eeeehhhccccHHHHHHHHHHhccCCcEEEEE
Q psy1420 173 TIAFGIRNVTRIDKALSEAYRVLKPGGRFLCL 204 (241)
Q Consensus 173 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~ 204 (241)
++...-. .....+....+.+.|...++..
T Consensus 70 i~~~~~d---~~n~~~~~~a~~~~~~~~iia~ 98 (218)
T 3l4b_C 70 VILTPRD---EVNLFIAQLVMKDFGVKRVVSL 98 (218)
T ss_dssp EECCSCH---HHHHHHHHHHHHTSCCCEEEEC
T ss_pred EEecCCc---HHHHHHHHHHHHHcCCCeEEEE
Confidence 7643211 1223444445555666666553
No 418
>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A
Probab=26.32 E-value=1.7e+02 Score=24.81 Aligned_cols=30 Identities=20% Similarity=0.218 Sum_probs=20.5
Q ss_pred ceeEEeeeehhhccccHHHHHHHHHHhccCCcEEEEE
Q psy1420 168 SYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCL 204 (241)
Q Consensus 168 ~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~ 204 (241)
.+|+|+.+-+-. .+....++|+|+|++++.
T Consensus 240 ~~Dvvid~~g~~-------~~~~~~~~l~~~G~iv~~ 269 (357)
T 1zsy_A 240 QPRLALNCVGGK-------SSTELLRQLARGGTMVTY 269 (357)
T ss_dssp CCSEEEESSCHH-------HHHHHHTTSCTTCEEEEC
T ss_pred CceEEEECCCcH-------HHHHHHHhhCCCCEEEEE
Confidence 489998654321 123467899999998875
No 419
>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*
Probab=26.31 E-value=2.3e+02 Score=23.27 Aligned_cols=20 Identities=25% Similarity=0.419 Sum_probs=13.7
Q ss_pred HHHHHHHHhccCCcEEEEEe
Q psy1420 186 KALSEAYRVLKPGGRFLCLE 205 (241)
Q Consensus 186 ~~l~~~~~~LkpgG~l~i~~ 205 (241)
..++.+.+.++++|+++.+.
T Consensus 150 ~l~~~~~~~m~~~g~Iv~is 169 (293)
T 3grk_A 150 AVSRRAEKLMADGGSILTLT 169 (293)
T ss_dssp HHHHHHHHHTTTCEEEEEEE
T ss_pred HHHHHHHHhccCCCEEEEEe
Confidence 34456667777888887765
No 420
>3lvj_C Sulfurtransferase TUSA; protein-protein complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PLP; 2.44A {Escherichia coli} SCOP: d.68.3.3 PDB: 3lvk_B* 1dcj_A
Probab=25.87 E-value=1.5e+02 Score=19.83 Aligned_cols=48 Identities=13% Similarity=0.119 Sum_probs=32.2
Q ss_pred HHHHHHhccCCcEEEEEecCH---HHHHHHHHHCCCceEEEEEecCceeEEE
Q psy1420 188 LSEAYRVLKPGGRFLCLEFSH---EEFKSMIESAGFQYVTYENLTFGVVAIH 236 (241)
Q Consensus 188 l~~~~~~LkpgG~l~i~~~~~---~~~~~~l~~~Gf~~~~~~~~~~~~~~~~ 236 (241)
.....+-|++|..|.+..-.. +.+..++++.|++++..+. ..|...++
T Consensus 27 ~kkal~~l~~G~~l~V~~dd~~a~~di~~~~~~~G~~~~~~~~-~~~~~~i~ 77 (82)
T 3lvj_C 27 VRKTVRNMQPGETLLIIADDPATTRDIPGFCTFMEHELVAKET-DGLPYRYL 77 (82)
T ss_dssp HHHHHHTSCTTCEEEEEECCTTHHHHHHHHHHHTTCEEEEEEC-SSSSEEEE
T ss_pred HHHHHHhCCCCCEEEEEECCccHHHHHHHHHHHCCCEEEEEEe-cCCEEEEE
Confidence 344445678898776654333 7899999999999887753 34444443
No 421
>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans}
Probab=25.70 E-value=1.9e+02 Score=23.52 Aligned_cols=22 Identities=9% Similarity=-0.159 Sum_probs=16.0
Q ss_pred CCCceeecCChHhHHHHHHHHh
Q psy1420 97 RQFPNQIDIPNPRLRFLEANAE 118 (241)
Q Consensus 97 ~~~~~~~D~s~~~~~~~~~~~~ 118 (241)
+.++..++.++...+...+.+.
T Consensus 35 G~~V~~~~r~~~~~~~~~~~l~ 56 (281)
T 3svt_A 35 GASVMIVGRNPDKLAGAVQELE 56 (281)
T ss_dssp TCEEEEEESCHHHHHHHHHHHH
T ss_pred CCEEEEEeCCHHHHHHHHHHHH
Confidence 5678888988887766665555
No 422
>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}
Probab=25.65 E-value=2.1e+02 Score=21.41 Aligned_cols=53 Identities=8% Similarity=0.024 Sum_probs=28.7
Q ss_pred CceeEEeeeehhhccccHHHHHHHHHHhccCCcEEEEEecCHHHHHHHHHHCCCceE
Q psy1420 167 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHEEFKSMIESAGFQYV 223 (241)
Q Consensus 167 ~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~l~~~Gf~~~ 223 (241)
..+|+|+....- ......+-...+.+.|++.+++.....+. .+.+++.|-..+
T Consensus 104 ~~ad~vi~~~~~---~~~~~~~~~~~~~~~~~~~ii~~~~~~~~-~~~l~~~G~~~v 156 (183)
T 3c85_A 104 GHVKLVLLAMPH---HQGNQTALEQLQRRNYKGQIAAIAEYPDQ-LEGLLESGVDAA 156 (183)
T ss_dssp CCCCEEEECCSS---HHHHHHHHHHHHHTTCCSEEEEEESSHHH-HHHHHHHTCSEE
T ss_pred CCCCEEEEeCCC---hHHHHHHHHHHHHHCCCCEEEEEECCHHH-HHHHHHcCCCEE
Confidence 457888864321 11122233345566777888776655433 446667776543
No 423
>4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens}
Probab=25.38 E-value=48 Score=28.39 Aligned_cols=32 Identities=13% Similarity=0.165 Sum_probs=20.0
Q ss_pred CceeEEeeeehhhccccHHHHHHHHHHhccCCcEEEEEe
Q psy1420 167 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 205 (241)
Q Consensus 167 ~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 205 (241)
+.+|+|+.+-+-. .+..+.++|+++|++++..
T Consensus 207 ~g~Dvv~d~~g~~-------~~~~~~~~l~~~G~~v~~G 238 (349)
T 4a27_A 207 EGVDIVLDCLCGD-------NTGKGLSLLKPLGTYILYG 238 (349)
T ss_dssp TCEEEEEEECC--------------CTTEEEEEEEEEEC
T ss_pred CCceEEEECCCch-------hHHHHHHHhhcCCEEEEEC
Confidence 5799999654321 2356778999999998754
No 424
>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*
Probab=25.36 E-value=1.4e+02 Score=24.91 Aligned_cols=75 Identities=15% Similarity=0.171 Sum_probs=43.8
Q ss_pred CeeEEecccCCCC-----CCCCceeEEeeeehhhccccHHHHHHHHHHhccCCcEEEEEecCH-----------------
Q psy1420 151 RLRFLEANAEELP-----IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH----------------- 208 (241)
Q Consensus 151 ~~~~~~~d~~~~~-----~~~~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~----------------- 208 (241)
++.++.+|+.+.. +....+|+|+...+..++.....+++.+.+. ..-.+++.+.++.
T Consensus 61 ~v~~~~~Dl~d~~~l~~~~~~~~~d~Vi~~a~~~n~~~~~~l~~aa~~~-g~v~~~v~S~~g~~~~e~~~~~p~~~y~~s 139 (346)
T 3i6i_A 61 GAIIVYGLINEQEAMEKILKEHEIDIVVSTVGGESILDQIALVKAMKAV-GTIKRFLPSEFGHDVNRADPVEPGLNMYRE 139 (346)
T ss_dssp TCEEEECCTTCHHHHHHHHHHTTCCEEEECCCGGGGGGHHHHHHHHHHH-CCCSEEECSCCSSCTTTCCCCTTHHHHHHH
T ss_pred CcEEEEeecCCHHHHHHHHhhCCCCEEEECCchhhHHHHHHHHHHHHHc-CCceEEeecccCCCCCccCcCCCcchHHHH
Confidence 5778888876532 1112689999887776665555555554432 1112454433221
Q ss_pred -HHHHHHHHHCCCceEEEE
Q psy1420 209 -EEFKSMIESAGFQYVTYE 226 (241)
Q Consensus 209 -~~~~~~l~~~Gf~~~~~~ 226 (241)
...++.+++.|+...-+.
T Consensus 140 K~~~e~~l~~~g~~~tivr 158 (346)
T 3i6i_A 140 KRRVRQLVEESGIPFTYIC 158 (346)
T ss_dssp HHHHHHHHHHTTCCBEEEE
T ss_pred HHHHHHHHHHcCCCEEEEE
Confidence 556778888887765444
No 425
>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A*
Probab=24.51 E-value=97 Score=26.73 Aligned_cols=32 Identities=9% Similarity=0.235 Sum_probs=22.0
Q ss_pred CceeEEeeeehhhccccHHHHHHHHHHhc-cCCcEEEEE
Q psy1420 167 DSYSAYTIAFGIRNVTRIDKALSEAYRVL-KPGGRFLCL 204 (241)
Q Consensus 167 ~~~D~V~~~~~l~~~~~~~~~l~~~~~~L-kpgG~l~i~ 204 (241)
+.+|+|+.+-+- ...++.+.+.| +++|++++.
T Consensus 230 g~~d~v~d~~g~------~~~~~~~~~~l~~~~G~iv~~ 262 (371)
T 3gqv_A 230 NNLRYALDCITN------VESTTFCFAAIGRAGGHYVSL 262 (371)
T ss_dssp TCCCEEEESSCS------HHHHHHHHHHSCTTCEEEEES
T ss_pred CCccEEEECCCc------hHHHHHHHHHhhcCCCEEEEE
Confidence 458999864432 24566777888 699998764
No 426
>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A
Probab=24.00 E-value=1.6e+02 Score=23.64 Aligned_cols=20 Identities=25% Similarity=0.072 Sum_probs=13.3
Q ss_pred CCCceeecCChHhHHHHHHH
Q psy1420 97 RQFPNQIDIPNPRLRFLEAN 116 (241)
Q Consensus 97 ~~~~~~~D~s~~~~~~~~~~ 116 (241)
+.++..+|.++...+...+.
T Consensus 32 G~~V~~~~r~~~~~~~~~~~ 51 (259)
T 4e6p_A 32 GATVAIADIDIERARQAAAE 51 (259)
T ss_dssp TCEEEEEESCHHHHHHHHHH
T ss_pred CCEEEEEeCCHHHHHHHHHH
Confidence 55788888887766554443
No 427
>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*
Probab=23.58 E-value=1.6e+02 Score=21.62 Aligned_cols=51 Identities=10% Similarity=0.011 Sum_probs=27.0
Q ss_pred CceeEEeeeehhhccccHHHHHHHHHHhccCCcEEEEEecCHHHHHHHHHHCCCc
Q psy1420 167 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHEEFKSMIESAGFQ 221 (241)
Q Consensus 167 ~~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~l~~~Gf~ 221 (241)
..+|+|+.+..- ......+..+.+.+.|...++....... ..+.+++.|-.
T Consensus 83 ~~ad~Vi~~~~~---~~~~~~~~~~~~~~~~~~~iv~~~~~~~-~~~~l~~~G~~ 133 (155)
T 2g1u_A 83 EKADMVFAFTND---DSTNFFISMNARYMFNVENVIARVYDPE-KIKIFEENGIK 133 (155)
T ss_dssp GGCSEEEECSSC---HHHHHHHHHHHHHTSCCSEEEEECSSGG-GHHHHHTTTCE
T ss_pred ccCCEEEEEeCC---cHHHHHHHHHHHHHCCCCeEEEEECCHH-HHHHHHHCCCc
Confidence 357888865322 1122334444455556666666554443 34567777755
No 428
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=23.40 E-value=2e+02 Score=20.40 Aligned_cols=86 Identities=16% Similarity=0.145 Sum_probs=46.7
Q ss_pred CCCceeecCChHhHHHHHHHHhcCCCccccccccceecceeeeeeccccCCCCCCeeEEecccCCCC----CCCCceeEE
Q psy1420 97 RQFPNQIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELP----IESDSYSAY 172 (241)
Q Consensus 97 ~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~~D~V 172 (241)
+..+.++|.++..++.+... ...++.+|..... ......|+|
T Consensus 29 g~~V~~id~~~~~~~~~~~~----------------------------------~~~~~~gd~~~~~~l~~~~~~~~d~v 74 (141)
T 3llv_A 29 GKKVLAVDKSKEKIELLEDE----------------------------------GFDAVIADPTDESFYRSLDLEGVSAV 74 (141)
T ss_dssp TCCEEEEESCHHHHHHHHHT----------------------------------TCEEEECCTTCHHHHHHSCCTTCSEE
T ss_pred CCeEEEEECCHHHHHHHHHC----------------------------------CCcEEECCCCCHHHHHhCCcccCCEE
Confidence 56799999998876665431 2345566655431 112457888
Q ss_pred eeeehhhccccHHHHHHHHHHhccCCcEEEEEecCHHHHHHHHHHCCCc
Q psy1420 173 TIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHEEFKSMIESAGFQ 221 (241)
Q Consensus 173 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~l~~~Gf~ 221 (241)
+.... .. .....+....+.+. ...++..... ....+.+++.|-.
T Consensus 75 i~~~~--~~-~~n~~~~~~a~~~~-~~~iia~~~~-~~~~~~l~~~G~~ 118 (141)
T 3llv_A 75 LITGS--DD-EFNLKILKALRSVS-DVYAIVRVSS-PKKKEEFEEAGAN 118 (141)
T ss_dssp EECCS--CH-HHHHHHHHHHHHHC-CCCEEEEESC-GGGHHHHHHTTCS
T ss_pred EEecC--CH-HHHHHHHHHHHHhC-CceEEEEEcC-hhHHHHHHHcCCC
Confidence 76443 11 11222333444455 5555554433 3445667888865
No 429
>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*
Probab=21.27 E-value=2.6e+02 Score=22.99 Aligned_cols=20 Identities=30% Similarity=0.395 Sum_probs=13.5
Q ss_pred HHHHHHHHhccCCcEEEEEe
Q psy1420 186 KALSEAYRVLKPGGRFLCLE 205 (241)
Q Consensus 186 ~~l~~~~~~LkpgG~l~i~~ 205 (241)
..++.+.+.++++|+++.+.
T Consensus 149 ~l~~~~~~~m~~~g~IV~is 168 (296)
T 3k31_A 149 YIASKAEPLMTNGGSILTLS 168 (296)
T ss_dssp HHHHHHGGGCTTCEEEEEEE
T ss_pred HHHHHHHHHhhcCCEEEEEE
Confidence 34455666777888887765
No 430
>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A*
Probab=21.27 E-value=4.1e+02 Score=26.78 Aligned_cols=46 Identities=20% Similarity=0.108 Sum_probs=32.3
Q ss_pred CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccC-CCceeecCChHhHHHHHHHHh
Q psy1420 42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIR-QFPNQIDIPNPRLRFLEANAE 118 (241)
Q Consensus 42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~s~~~~~~~~~~~~ 118 (241)
.+..+++|+=||.|.++ .-+-. + .. ..+.++|+++.+.+..+.+..
T Consensus 538 ~~~l~~iDLFaG~GGls-------------lGl~~------A------------G~~~vv~avEid~~A~~ty~~N~p 584 (1002)
T 3swr_A 538 LPKLRTLDVFSGCGGLS-------------EGFHQ------A------------GISDTLWAIEMWDPAAQAFRLNNP 584 (1002)
T ss_dssp CCCEEEEEESCTTSHHH-------------HHHHH------H------------TSEEEEEEECSSHHHHHHHHHHCT
T ss_pred CCCCeEEEeccCccHHH-------------HHHHH------C------------CCCceEEEEECCHHHHHHHHHhCC
Confidence 35568999999999988 32222 0 11 257799999999887776643
No 431
>2hfq_A Hypothetical protein; A/B protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Nitrosomonas europaea} SCOP: d.375.1.1
Probab=21.07 E-value=62 Score=23.64 Aligned_cols=53 Identities=23% Similarity=0.235 Sum_probs=39.6
Q ss_pred ceeEEeeeehhhccccHHHHHHHHHHhcc-----------CCcEEEEEecCHHHHHHHHHHCCCceEEEE
Q psy1420 168 SYSAYTIAFGIRNVTRIDKALSEAYRVLK-----------PGGRFLCLEFSHEEFKSMIESAGFQYVTYE 226 (241)
Q Consensus 168 ~~D~V~~~~~l~~~~~~~~~l~~~~~~Lk-----------pgG~l~i~~~~~~~~~~~l~~~Gf~~~~~~ 226 (241)
.||+++-. .+.+++++-....|+ ...++.-++...++++..+++.||-+.+++
T Consensus 41 HFDVlv~~------~n~eka~~yaK~yL~siG~~~~~vT~~eC~FCHsE~A~~ev~~~I~~~Gy~I~~ME 104 (109)
T 2hfq_A 41 HFDVFTDV------RDDKKAIEFAKQWLSSIGEEGATVTSEECRFCHSEKAPDEVIEAIKQNGYFIYKME 104 (109)
T ss_dssp EEEEEESC------CCHHHHHHHHHHHHHHHTCCCSCCCTTTBCCCEEEECCHHHHHHHHHHSEEEECCS
T ss_pred EEEEEeCC------cCHHHHHHHHHHHHHhcCcCCCccchhhCcccccccCCHHHHHHHHHCCEEEEEcC
Confidence 68998843 677777777777775 234455566666999999999999988776
No 432
>4ft4_B DNA (cytosine-5)-methyltransferase 1; chromodomain, BAH domain, DNA methyltransferase domain, H3K9 binding, methylation, transferase; HET: DNA MLY SAH; 2.70A {Zea mays} PDB: 4ft2_A* 4fsx_A*
Probab=20.78 E-value=1.9e+02 Score=27.76 Aligned_cols=51 Identities=20% Similarity=0.165 Sum_probs=32.3
Q ss_pred CCCCeEEEEecCCCcchhHHHHHHhhhhhhhhhhhhhhhhhhcCCCcchhhhcccCCCceeecCChHhHHHHHHHH
Q psy1420 42 THDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANA 117 (241)
Q Consensus 42 ~~~~~vLdvG~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~ 117 (241)
++..+|+|+=||.|.++ .-+...-+ . .+. ....+.++|.++.+.+..+.+.
T Consensus 210 ~k~ltvIDLFAG~GGls-------------~Gfe~AG~-~-~~~----------~f~vv~AvE~d~~A~~Ty~~Nh 260 (784)
T 4ft4_B 210 TRTATLLDLYSGCGGMS-------------TGLCLGAA-L-SGL----------KLETRWAVDFNSFACQSLKYNH 260 (784)
T ss_dssp CEEEEEEEETCTTSHHH-------------HHHHHHHH-H-HTE----------EEEEEEEEESCHHHHHHHHHHC
T ss_pred CCCCeEEEeCcCccHHH-------------HHHHHhCc-c-cCC----------ceeEEEEEeCCHHHHHHHHHHC
Confidence 45578999999999988 22221000 0 000 1235779999999888877764
No 433
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=20.47 E-value=2.3e+02 Score=21.13 Aligned_cols=56 Identities=14% Similarity=0.116 Sum_probs=34.1
Q ss_pred ceeEEeeeehhhcccc-HHHHHHHHHHhccCCcEEEEEec------CHHHHHHHHHHCCCceE
Q psy1420 168 SYSAYTIAFGIRNVTR-IDKALSEAYRVLKPGGRFLCLEF------SHEEFKSMIESAGFQYV 223 (241)
Q Consensus 168 ~~D~V~~~~~l~~~~~-~~~~l~~~~~~LkpgG~l~i~~~------~~~~~~~~l~~~Gf~~~ 223 (241)
.+|.|+.....+...- ...++..+.....+|-.+.+... ....+.+.+++.||.++
T Consensus 56 ~~d~ii~Gspty~g~~p~~~~l~~l~~~~~~~k~va~fgs~g~~~~a~~~l~~~l~~~G~~~v 118 (159)
T 3fni_A 56 RCTGLVIGMSPAASAASIQGALSTILGSVNEKQAVGIFETGGGDDEPIDPLLSKFRNLGLTTA 118 (159)
T ss_dssp TEEEEEEECCBTTSHHHHHHHHHHHHHHCCTTSEEEEECCSSSCBCCHHHHHHHHHHTTCEES
T ss_pred hCCEEEEEcCcCCCCccHHHHHHHHHhhcccCCEEEEEEcCCCCcHHHHHHHHHHHHCCCEEe
Confidence 4788887655544221 24667776654444444444321 12899999999999865
No 434
>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*
Probab=20.39 E-value=3.8e+02 Score=22.46 Aligned_cols=33 Identities=9% Similarity=0.020 Sum_probs=22.8
Q ss_pred ceeEEeeeehhhccccHHHHHHHHHHhccCCcEEEE
Q psy1420 168 SYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLC 203 (241)
Q Consensus 168 ~~D~V~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i 203 (241)
..|+|+.+-... .....+.++...++||..++-
T Consensus 94 ~aDvVilavp~~---~~~~vl~~l~~~l~~~~iv~d 126 (314)
T 3ggo_A 94 SPDFVMLSSPVR---TFREIAKKLSYILSEDATVTD 126 (314)
T ss_dssp CCSEEEECSCGG---GHHHHHHHHHHHSCTTCEEEE
T ss_pred cCCEEEEeCCHH---HHHHHHHHHhhccCCCcEEEE
Confidence 468988654332 245677888888999886654
Done!