RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy1420
(241 letters)
>gnl|CDD|234689 PRK00216, ubiE, ubiquinone/menaquinone biosynthesis
methyltransferase; Reviewed.
Length = 239
Score = 177 bits (451), Expect = 2e-55
Identities = 86/283 (30%), Positives = 118/283 (41%), Gaps = 106/283 (37%)
Query: 7 EVFENVAKSYDTMNDAMSFGIHRLWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRA 66
E+F+++A YD MND +SFG+HR+W+ I LG K+LD+A GT LA L +A
Sbjct: 15 EMFDSIAPKYDLMNDLLSFGLHRVWRRKTIKWLGVRPGDKVLDLACGTGDLAIAL--AKA 72
Query: 67 YDQYSFQVIPV---MGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIE 123
+ + +V+ + G L G+ K + N + F++ +AE LP
Sbjct: 73 VGK-TGEVVGLDFSEGMLAVGREK-----------LRDLGLSGN--VEFVQGDAEALPFP 118
Query: 124 SDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTR 183
+S+ D A TIAFG+RNV
Sbjct: 119 DNSF---------------D---------------------------AVTIAFGLRNVPD 136
Query: 184 IDKALSEAYRVLKPGGRFLCLEFSH----------------------------------- 208
IDKAL E YRVLKPGGR + LEFS
Sbjct: 137 IDKALREMYRVLKPGGRLVILEFSKPTNPPLKKAYDFYLFKVLPLIGKLISKNAEAYSYL 196
Query: 209 ----------EEFKSMIESAGFQYVTYENLTFGVVAIHSGFKL 241
EE +M+E AGF+ V Y NLT G+VA+H G+K
Sbjct: 197 AESIRAFPDQEELAAMLEEAGFERVRYRNLTGGIVALHVGYKP 239
>gnl|CDD|110227 pfam01209, Ubie_methyltran, ubiE/COQ5 methyltransferase family.
Length = 233
Score = 165 bits (420), Expect = 5e-51
Identities = 91/279 (32%), Positives = 113/279 (40%), Gaps = 101/279 (36%)
Query: 7 EVFENVAKSYDTMNDAMSFGIHRLWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRA 66
+VF +VA YD MND +SFGIHRLWKD + +G K LDVAGGT + F L
Sbjct: 11 DVFSSVASKYDLMNDVISFGIHRLWKDFTMKCMGVKRGNKFLDVAGGT---GDWTFGLSD 67
Query: 67 YDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIESDS 126
S +V+ + DI L+ E A+E
Sbjct: 68 SAGSSGKVVGL--------------------------DINENMLKEGEKKAKE------- 94
Query: 127 YSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDK 186
K +I FL+ NAEELP E DS+ TI+FG+RN K
Sbjct: 95 ---------------EGKYNI-----EFLQGNAEELPFEDDSFDIVTISFGLRNFPDYLK 134
Query: 187 ALSEAYRVLKPGGRFLCLEFSH-------------------------------------- 208
L EA+RVLKPGGR +CLEFS
Sbjct: 135 VLKEAFRVLKPGGRVVCLEFSKPENPLLSQAYELYFKYVMPFMGKMFAKSYKSYQYLQES 194
Query: 209 -------EEFKSMIESAGFQYVTYENLTFGVVAIHSGFK 240
+ SM E AGF+ V YE+LT G+ AIH G K
Sbjct: 195 IRDFPDQKTLASMFEKAGFKSVGYESLTGGIAAIHWGIK 233
>gnl|CDD|233645 TIGR01934, MenG_MenH_UbiE, ubiquinone/menaquinone biosynthesis
methyltransferases. This model represents a family of
methyltransferases involved in the biosynthesis of
menaquinone and ubiqinone. Some members such as the UbiE
enzyme from E. coli are believed to act in both
pathways, while others may act in only the menaquinone
pathway. These methyltransferases are members of the
UbiE/CoQ family of methyltransferases (pfam01209) which
also contains ubiquinone methyltransferases and other
methyltransferases. Members of this clade include a wide
distribution of bacteria and eukaryotes, but no archaea.
An outgroup for this clade is provided by the
phosphatidylethanolamine methyltransferase (EC 2.1.1.17)
from Rhodobacter sphaeroides. Note that a number of
non-orthologous genes which are members of pfam03737
have been erroneously annotated as MenG
methyltransferases [Biosynthesis of cofactors,
prosthetic groups, and carriers, Menaquinone and
ubiquinone].
Length = 223
Score = 152 bits (386), Expect = 6e-46
Identities = 83/279 (29%), Positives = 115/279 (41%), Gaps = 103/279 (36%)
Query: 7 EVFENVAKSYDTMNDAMSFGIHRLWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRA 66
E+F+ +A YD +ND +SFG+HRLW+ + +G K+LDVA GT LA L
Sbjct: 3 EMFDRIAPKYDLLNDLLSFGLHRLWRRRAVKLIGVFKGQKVLDVACGTGDLAIELA---- 58
Query: 67 YDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIESDS 126
+ P G++ + + L + ++ ++I F++A+AE LP E +S
Sbjct: 59 ------KSAPDRGKVTGVDFSS-EMLEVAKKKSELPLNIE-----FIQADAEALPFEDNS 106
Query: 127 YSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDK 186
+ A TIAF G+RNVT I K
Sbjct: 107 FDAVTIAF------------------------------------------GLRNVTDIQK 124
Query: 187 ALSEAYRVLKPGGRFLCLEFS--------------------------------------- 207
AL E YRVLKPGGR + LEFS
Sbjct: 125 ALREMYRVLKPGGRLVILEFSKPANALLKKFYKFYLKNVLPSIGGLISKNAEAYTYLPES 184
Query: 208 ------HEEFKSMIESAGFQYVTYENLTFGVVAIHSGFK 240
EE +M++ AGF+ V Y +LTFGV AIH G K
Sbjct: 185 IRAFPSQEELAAMLKEAGFEEVRYRSLTFGVAAIHVGKK 223
>gnl|CDD|225136 COG2226, UbiE, Methylase involved in ubiquinone/menaquinone
biosynthesis [Coenzyme metabolism].
Length = 238
Score = 150 bits (382), Expect = 3e-45
Identities = 89/282 (31%), Positives = 111/282 (39%), Gaps = 105/282 (37%)
Query: 7 EVFENVAKSYDTMNDAMSFGIHRLWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRA 66
+VF+ VAK YD MND MSFG+HRLW+ I LG K+LDVA GT +A L + ++
Sbjct: 15 KVFDKVAKKYDLMNDLMSFGLHRLWRRALISLLGIKPGDKVLDVACGTGDMA--LLLAKS 72
Query: 67 YDQYSFQVI-PVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIESD 125
+ L + K + F+ +AE LP +
Sbjct: 73 VGTGEVVGLDISESMLEVAREK--------------LKKKGVQNVEFVVGDAENLPFPDN 118
Query: 126 SYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRID 185
S+ A TI+F G+RNVT ID
Sbjct: 119 SFDAVTISF------------------------------------------GLRNVTDID 136
Query: 186 KALSEAYRVLKPGGRFLCLEFSH------------------------------------- 208
KAL E YRVLKPGGR L LEFS
Sbjct: 137 KALKEMYRVLKPGGRLLVLEFSKPDNPVLRKAYILYYFKYVLPLIGKLVAKDAEAYEYLA 196
Query: 209 ---------EEFKSMIESAGFQYVTYENLTFGVVAIHSGFKL 241
EE K MIE AGF+ V YENLTFG+VA+H G+K
Sbjct: 197 ESIRRFPDQEELKQMIEKAGFEEVRYENLTFGIVALHRGYKP 238
>gnl|CDD|131799 TIGR02752, MenG_heptapren, demethylmenaquinone methyltransferase.
MenG is a generic term for a methyltransferase that
catalyzes the last step in menaquinone biosynthesis; the
exact enzymatic activity differs for different MenG
because the menaquinone differ in their prenoid side
chains in different species. Members of this MenG
protein family are 2-heptaprenyl-1,4-naphthoquinone
methyltransferase, and are found together in operons
with the two subunits of the heptaprenyl diphosphate
synthase in Bacillus subtilis and related species
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Menaquinone and ubiquinone].
Length = 231
Score = 73.3 bits (180), Expect = 1e-15
Identities = 40/134 (29%), Positives = 56/134 (41%), Gaps = 45/134 (33%)
Query: 152 LRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH--- 208
+ + NA ELP + +S+ TI FG+RNV + L E YRV+KPGG+ +CLE S
Sbjct: 98 VELVHGNAMELPFDDNSFDYVTIGFGLRNVPDYMQVLREMYRVVKPGGKVVCLETSQPTI 157
Query: 209 ------------------------------------------EEFKSMIESAGFQYVTYE 226
+E M + AGF+ V +
Sbjct: 158 PGFKQLYFFYFKYIMPLFGKLFAKSYKEYSWLQESTRDFPGMDELAEMFQEAGFKDVEVK 217
Query: 227 NLTFGVVAIHSGFK 240
+ T GV A+H GFK
Sbjct: 218 SYTGGVAAMHMGFK 231
Score = 37.5 bits (87), Expect = 0.003
Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 8/80 (10%)
Query: 61 LFVLR-AYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLR--FLEANA 117
+ + Y Y ++P+ G+L A +K Y +L ES R FP L F EA
Sbjct: 157 IPGFKQLYFFYFKYIMPLFGKLFAKSYKEYSWLQESTRDFPGM-----DELAEMFQEAGF 211
Query: 118 EELPIESDSYSAYTIAFGIR 137
+++ ++S + + G +
Sbjct: 212 KDVEVKSYTGGVAAMHMGFK 231
>gnl|CDD|177877 PLN02233, PLN02233, ubiquinone biosynthesis methyltransferase.
Length = 261
Score = 68.0 bits (166), Expect = 1e-13
Identities = 53/212 (25%), Positives = 89/212 (41%), Gaps = 55/212 (25%)
Query: 8 VFENVAKSYDTMNDAMSFGIHRLWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAY 67
+F +A YD +ND +S G HR+WK + + G ++LD+ G+ LA F+L
Sbjct: 38 LFNRIAPVYDNLNDLLSLGQHRIWKRMAVSWSGAKMGDRVLDLCCGSGDLA---FLLS-- 92
Query: 68 DQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIESDSY 127
+ + G+++ + Q V + RQ E +
Sbjct: 93 -----EKVGSDGKVMGLDFSSEQLAVAASRQ------------------------ELKAK 123
Query: 128 SAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKA 187
S Y + ++E +A +LP + + A T+ +G+RNV KA
Sbjct: 124 SCYK-------------------NIEWIEGDATDLPFDDCYFDAITMGYGLRNVVDRLKA 164
Query: 188 LSEAYRVLKPGGRFLCLEF--SHEEFKSMIES 217
+ E YRVLKPG R L+F S + F + ++
Sbjct: 165 MQEMYRVLKPGSRVSILDFNKSTQPFTTSMQE 196
>gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain. Members of
this family are SAM dependent methyltransferases.
Length = 92
Score = 58.8 bits (143), Expect = 1e-11
Identities = 16/55 (29%), Positives = 30/55 (54%)
Query: 149 NPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLC 203
+F+ +AE+LP +S+ + + ++ ++AL E RVLKPGG+ +
Sbjct: 38 RAPRKFVVGDAEDLPFPDESFDVVVSSLVLHHLPDPERALREIARVLKPGGKLVI 92
>gnl|CDD|165876 PLN02232, PLN02232, ubiquinone biosynthesis methyltransferase.
Length = 160
Score = 50.5 bits (120), Expect = 7e-08
Identities = 22/56 (39%), Positives = 36/56 (64%)
Query: 152 LRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFS 207
+ ++E +A +LP + + A T+ +G+RNV +A+ E YRVLKPG R L+F+
Sbjct: 28 IEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPGSRVSILDFN 83
>gnl|CDD|181382 PRK08317, PRK08317, hypothetical protein; Provisional.
Length = 241
Score = 45.7 bits (109), Expect = 6e-06
Identities = 18/58 (31%), Positives = 32/58 (55%)
Query: 149 NPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEF 206
P + F+ +A+ LP S+ A ++++ +AL+E RVL+PGGR + L+
Sbjct: 68 GPNVEFVRGDADGLPFPDGSFDAVRSDRVLQHLEDPARALAEIARVLRPGGRVVVLDT 125
>gnl|CDD|222415 pfam13847, Methyltransf_31, Methyltransferase domain. This family
appears to be have methyltransferase activity.
Length = 151
Score = 42.8 bits (101), Expect = 3e-05
Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
Query: 150 PRLRFLEANAEELP---IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEF 206
+ F++ + EELP +E +S+ + ++ DK L E RVLKPGG + +
Sbjct: 54 ENVEFIQGDIEELPQLQLEDNSFDVVISNEVLNHLPDPDKVLEEIIRVLKPGGVLIVSDP 113
Query: 207 SHE-EFKSMIES 217
E +++E
Sbjct: 114 VLLSELPALLED 125
>gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent
methyltransferases (SAM or AdoMet-MTase), class I;
AdoMet-MTases are enzymes that use
S-adenosyl-L-methionine (SAM or AdoMet) as a substrate
for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy). There are at least
five structurally distinct families of AdoMet-MTases,
class I being the largest and most diverse. Within this
class enzymes can be classified by different substrate
specificities (small molecules, lipids, nucleic acids,
etc.) and different target atoms for methylation
(nitrogen, oxygen, carbon, sulfur, etc.).
Length = 107
Score = 39.0 bits (91), Expect = 2e-04
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Query: 138 NVTRIDKIDIPNPRLRFLEANAEELPIESD-SYS-AYTIAFGIRNVTRIDKALSEAYRVL 195
+ R + + L+ +AEELP E+D S+ + V + + L EA R+L
Sbjct: 35 ELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHHLVEDLARFLEEARRLL 94
Query: 196 KPGGRFLC 203
KPGG +
Sbjct: 95 KPGGVLVL 102
>gnl|CDD|237007 PRK11873, arsM, arsenite S-adenosylmethyltransferase; Reviewed.
Length = 272
Score = 40.7 bits (96), Expect = 3e-04
Identities = 26/97 (26%), Positives = 35/97 (36%), Gaps = 35/97 (36%)
Query: 154 FLEANAEELPIESDSYSAYTIAFGIRN-----VTRIDKALSEAYRVLKPGGRFL------ 202
F E LP+ +S I I N ++ EA+RVLKPGGRF
Sbjct: 132 FRLGEIEALPVADNS--VDVI---ISNCVINLSPDKERVFKEAFRVLKPGGRFAISDVVL 186
Query: 203 -----------------CLE--FSHEEFKSMIESAGF 220
C+ EE+ +M+ AGF
Sbjct: 187 RGELPEEIRNDAELYAGCVAGALQEEEYLAMLAEAGF 223
>gnl|CDD|215270 PLN02490, PLN02490, MPBQ/MSBQ methyltransferase.
Length = 340
Score = 40.3 bits (94), Expect = 5e-04
Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 9/73 (12%)
Query: 137 RNVTRID---------KIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKA 187
+NVT +D K P + +E +AE+LP +D Y A I +
Sbjct: 138 KNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRG 197
Query: 188 LSEAYRVLKPGGR 200
+ EAYRVLK GG+
Sbjct: 198 IKEAYRVLKIGGK 210
>gnl|CDD|233708 TIGR02072, BioC, biotin biosynthesis protein BioC. This enzyme,
which is found in biotin biosynthetic gene clusters in
proteobacteria, firmicutes, green-sulfur bacteria,
fusobacterium and bacteroides, is believed to carry out
an enzymatic step prior to the formation of pimeloyl-CoA
(although attribution of this annotation is not
traceable). The enzyme appears related to
methyltransferases by homology [Biosynthesis of
cofactors, prosthetic groups, and carriers, Biotin].
Length = 240
Score = 37.3 bits (87), Expect = 0.004
Identities = 19/64 (29%), Positives = 31/64 (48%)
Query: 149 NPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH 208
+ ++F+ +AE+LP+E S+ ++ + +ALSE RVLKPGG F
Sbjct: 79 SENVQFICGDAEKLPLEDSSFDLIVSNLALQWCDDLSQALSELARVLKPGGLLAFSTFGP 138
Query: 209 EEFK 212
Sbjct: 139 GTLH 142
>gnl|CDD|222287 pfam13649, Methyltransf_25, Methyltransferase domain. This family
appears to be a methyltransferase domain.
Length = 97
Score = 34.2 bits (79), Expect = 0.009
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 144 KIDIPNPRLRFLEANAEELPIESDSYSAYTIA---FGIRNVTRIDKALSEAYRVLKPGG 199
++ P++RF+ A+A +LP E S+ A + ++ L EA R+L+PGG
Sbjct: 39 RLRDKGPKVRFVVADARDLPFEEGSFDLVICAGLSLDYLSPKQLRALLREAARLLRPGG 97
>gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain. Protein in
this family function as methyltransferases.
Length = 104
Score = 32.7 bits (75), Expect = 0.037
Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 150 PRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFL 202
PR+ F++ +A + + + A I G ++ + L +LKPGGR +
Sbjct: 51 PRITFVQGDAPDALDLLEGFDAVFIGGGGGDL---LELLDALASLLKPGGRLV 100
>gnl|CDD|203179 pfam05148, Methyltransf_8, Hypothetical methyltransferase. This
family consists of several uncharacterized eukaryotic
proteins which are related to methyltransferases
pfam01209.
Length = 219
Score = 34.0 bits (78), Expect = 0.039
Identities = 24/95 (25%), Positives = 35/95 (36%), Gaps = 6/95 (6%)
Query: 132 IAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEA 191
IAF R + D+ R + + +P+E +S + T I L EA
Sbjct: 86 IAFRKREFENVHSFDLVAVNKRVIPCDMARVPLEDESVDVAVFCLSLM-GTNIADFLKEA 144
Query: 192 YRVLKPGGRFLCLEF-----SHEEFKSMIESAGFQ 221
R+LK GG E S F+ GF+
Sbjct: 145 NRILKNGGLLKIAEVRSRFPSVGLFERAFTKLGFE 179
>gnl|CDD|226594 COG4109, COG4109, Predicted transcriptional regulator containing
CBS domains [Transcription].
Length = 432
Score = 33.9 bits (78), Expect = 0.066
Identities = 25/92 (27%), Positives = 38/92 (41%), Gaps = 20/92 (21%)
Query: 157 ANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAY---------RVLKPGGR--FLCLE 205
AN + LP+ S SY +T+A T I+KALS ++ P +L
Sbjct: 153 ANEKGLPVLSTSYDTFTVA------TMINKALSNQLIKKDIITVEDIMTPLEDTSYLRET 206
Query: 206 FSHEEFKSMIESAG---FQYVTYENLTFGVVA 234
+ E++ ++E G F V GVV
Sbjct: 207 DTVEDWLDLVEKTGHSRFPVVNRSMKVVGVVT 238
>gnl|CDD|223574 COG0500, SmtA, SAM-dependent methyltransferases [Secondary
metabolites biosynthesis, transport, and catabolism /
General function prediction only].
Length = 257
Score = 32.9 bits (72), Expect = 0.12
Identities = 18/71 (25%), Positives = 29/71 (40%)
Query: 141 RIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGR 200
R + + +A LP E + I+ + ++ KAL E RVLKPGGR
Sbjct: 91 RAEGAGLGLVDFVVADALGGVLPFEDSASFDLVISLLVLHLLPPAKALRELLRVLKPGGR 150
Query: 201 FLCLEFSHEEF 211
+ + +
Sbjct: 151 LVLSDLLRDGL 161
>gnl|CDD|239282 cd02984, TRX_PICOT, TRX domain, PICOT (for PKC-interacting cousin
of TRX) subfamily; PICOT is a protein that interacts
with protein kinase C (PKC) theta, a calcium independent
PKC isoform selectively expressed in skeletal muscle and
T lymphocytes. PICOT contains an N-terminal TRX-like
domain, which does not contain the catalytic CXXC motif,
followed by one to three glutaredoxin domains. The
TRX-like domain is required for interaction with PKC
theta. PICOT inhibits the activation of c-Jun N-terminal
kinase and the transcription factors, AP-1 and NF-kB,
induced by PKC theta or T-cell activating stimuli.
Length = 97
Score = 30.7 bits (70), Expect = 0.16
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Query: 106 PNPRLRFLEANAEELPIESDSY---SAYTIAFGIRNVTRIDKIDIPNP 150
P + FL AEELP S+ + + T F RN T +D++ +P
Sbjct: 43 AFPSVLFLSIEAEELPEISEKFEITAVPTFVF-FRNGTIVDRVSGADP 89
Score = 26.9 bits (60), Expect = 4.1
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 4/41 (9%)
Query: 148 PNPRLRFLEANAEELPIESDSY---SAYTIAFGIRNVTRID 185
P + FL AEELP S+ + + T F RN T +D
Sbjct: 43 AFPSVLFLSIEAEELPEISEKFEITAVPTFVF-FRNGTIVD 82
>gnl|CDD|237872 PRK14968, PRK14968, putative methyltransferase; Provisional.
Length = 188
Score = 31.8 bits (73), Expect = 0.18
Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Query: 184 IDKALSEAYRVLKPGGRFLCLEFS---HEEFKSMIESAGFQY 222
ID+ L E R LKPGGR L L+ S +E +E GF+
Sbjct: 127 IDRFLDEVGRYLKPGGRILLLQSSLTGEDEVLEYLEKLGFEA 168
>gnl|CDD|222171 pfam13489, Methyltransf_23, Methyltransferase domain. This family
appears to be a methyltransferase domain.
Length = 154
Score = 30.9 bits (70), Expect = 0.27
Identities = 22/105 (20%), Positives = 36/105 (34%), Gaps = 26/105 (24%)
Query: 145 IDI-PNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFL- 202
+D P L F +A + + + Y T + ++ L + +LKPGG L
Sbjct: 50 VDPSPAAVLIFSLFDAPDPAVLAGKYDLITAFEVLEHLPDPPALLQQLRELLKPGGVLLI 109
Query: 203 ------------------------CLEFSHEEFKSMIESAGFQYV 223
+S E K ++E AGF+ V
Sbjct: 110 STPLADDDARLFANWHYLRPRNTHISFYSEESLKRLLEKAGFELV 154
>gnl|CDD|219760 pfam08242, Methyltransf_12, Methyltransferase domain. Members of
this family are SAM dependent methyltransferases.
Length = 98
Score = 28.9 bits (65), Expect = 0.70
Identities = 12/54 (22%), Positives = 21/54 (38%), Gaps = 2/54 (3%)
Query: 148 PNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRF 201
R+R +A +L S + + + ++ L R+LKPGG
Sbjct: 47 DAVRVRLDVLDAIDLDPGS--FDVVVASNVLHHLADPRAVLRNLRRLLKPGGVL 98
>gnl|CDD|232976 TIGR00438, rrmJ, cell division protein FtsJ. Methylates the 23S
rRNA. Previously known as cell division protein ftsJ.//
Trusted cutoff too high? [SS 10/1/04] [Protein
synthesis, tRNA and rRNA base modification].
Length = 188
Score = 29.8 bits (67), Expect = 0.79
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 179 RNVTRIDKALSEAYRVLKPGGRFLCLEFSHEEF 211
R++ ++ AL A VLKP G F+ F EE
Sbjct: 120 RSIDLVELALDIAKEVLKPKGNFVVKVFQGEEI 152
>gnl|CDD|178092 PLN02474, PLN02474, UTP--glucose-1-phosphate uridylyltransferase.
Length = 469
Score = 30.2 bits (68), Expect = 1.1
Identities = 21/49 (42%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Query: 95 SIRQFPNQIDIPNPRLRFL--EANAEELPIESDSYSAYTIAFGIRNVTR 141
+IR F N I I PR RFL +A ++ L ++SD Y+ F IRN R
Sbjct: 339 AIRFFDNAIGINVPRSRFLPVKATSDLLLVQSDLYTLVD-GFVIRNKAR 386
>gnl|CDD|222295 pfam13659, Methyltransf_26, Methyltransferase domain. This family
contains methyltransferase domains.
Length = 117
Score = 28.6 bits (64), Expect = 1.2
Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 9/64 (14%)
Query: 150 PRLRFLEANAEELP-IESDSYSA--------YTIAFGIRNVTRIDKALSEAYRVLKPGGR 200
PR+R + +A EL + S+ N D+ L+ A R+LKPGG
Sbjct: 51 PRVRVVVGDARELLELPDGSFDLVLGNPPYGPRAGDPKDNRDLYDRFLAAALRLLKPGGV 110
Query: 201 FLCL 204
+ +
Sbjct: 111 LVVI 114
>gnl|CDD|234285 TIGR03625, L3_bact, 50S ribosomal protein L3, bacterial. This
model describes bacterial (and mitochondrial and
chloroplast) class of ribosomal protein L3. A separate
model describes the archaeal form, where both belong to
Pfam family pfam00297. The name is phrased to meet the
needs of bacterial genome annotation. Organellar forms
typically will have transit peptides, N-terminal to the
region modeled here.
Length = 202
Score = 29.4 bits (67), Expect = 1.4
Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 8/41 (19%)
Query: 164 IESDSYSAYTIAFGIRNVTRIDKALS--------EAYRVLK 196
+E D YSA + FG + R++K + E R L+
Sbjct: 38 VEKDGYSAVQLGFGEKKEKRVNKPEAGHFAKAGVEPKRHLR 78
>gnl|CDD|180751 PRK06922, PRK06922, hypothetical protein; Provisional.
Length = 677
Score = 29.8 bits (67), Expect = 1.6
Identities = 13/23 (56%), Positives = 14/23 (60%)
Query: 180 NVTRIDKALSEAYRVLKPGGRFL 202
N I K L AY VLKPGGR +
Sbjct: 512 NHEVIKKGLQSAYEVLKPGGRII 534
>gnl|CDD|233303 TIGR01177, TIGR01177, TIGR01177 family protein. This family is
found exclusively in the Archaea [Hypothetical proteins,
Conserved].
Length = 329
Score = 29.3 bits (66), Expect = 1.7
Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 9/73 (12%)
Query: 157 ANAEELPIESDS---------YSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFS 207
+A +LP+ S+S Y T A G + +++L E + VLK G + +
Sbjct: 237 GDATKLPLSSESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPT 296
Query: 208 HEEFKSMIESAGF 220
+ +S+ E A
Sbjct: 297 RIDLESLAEDAFR 309
>gnl|CDD|236467 PRK09328, PRK09328, N5-glutamine S-adenosyl-L-methionine-dependent
methyltransferase; Provisional.
Length = 275
Score = 29.0 bits (66), Expect = 1.8
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 4/38 (10%)
Query: 190 EAYRVLKPGGRFLCLEFSH---EEFKSMIESAGFQYVT 224
+A R LKPGG +L LE + E ++++ +AGF V
Sbjct: 223 QAPRYLKPGG-WLLLEIGYDQGEAVRALLAAAGFADVE 259
>gnl|CDD|234547 TIGR04330, cas_Cpf1, CRISPR-associated protein Cpf1, subtype PREFRAN.
This family is the long protein of a novel CRISPR
subtype, PREFRAN, which is most common in Prevotella and
Francisella, although widely distributed. The PREFRAN
type has Cas1, Cas2, and Cas4, but lacks the helicase
Cas3 and endonuclease Cas3-HD.
Length = 1287
Score = 29.4 bits (66), Expect = 2.0
Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 9/59 (15%)
Query: 154 FLEANAEELPIESDSYSAYTIAF-GIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHEEF 211
F N +LP ++D+ AY IA G+ + +I + G + L L S+ E+
Sbjct: 1229 FDSRNDPKLPKDADANGAYNIAKKGLMLIRKIKQE--------YRGDKKLDLSISNTEW 1279
>gnl|CDD|216666 pfam01728, FtsJ, FtsJ-like methyltransferase. This family consists
of FtsJ from various bacterial and archaeal sources FtsJ
is a methyltransferase, but actually has no effect on
cell division. FtsJ's substrate is the 23S rRNA. The 1.5
A crystal structure of FtsJ in complex with its cofactor
S-adenosylmethionine revealed that FtsJ has a
methyltransferase fold. This family also includes the N
terminus of flaviviral NS5 protein. It has been
hypothesised that the N-terminal domain of NS5 is a
methyltransferase involved in viral RNA capping.
Length = 177
Score = 28.7 bits (65), Expect = 2.1
Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 3/50 (6%)
Query: 179 RNVTRIDKALSEAYRVLKPGGRFLCLEFSHEEFKSMIE---SAGFQYVTY 225
++ + AL A VL+PGG F+ F EF + GF+ V
Sbjct: 108 ISLQLVLAALLLALEVLRPGGNFVVKVFKGFEFSVELLEKLKKGFEKVGI 157
>gnl|CDD|182340 PRK10258, PRK10258, biotin biosynthesis protein BioC; Provisional.
Length = 251
Score = 29.0 bits (65), Expect = 2.2
Identities = 9/14 (64%), Positives = 11/14 (78%)
Query: 187 ALSEAYRVLKPGGR 200
AL E YRV++PGG
Sbjct: 122 ALRELYRVVRPGGV 135
>gnl|CDD|217086 pfam02527, GidB, rRNA small subunit methyltransferase G. This is a
family of bacterial glucose inhibited division proteins
these are probably involved in the regulation of cell
devision. GidB has been shown to be a methyltransferase
G specific to the rRNA small subunit. Previously
identified as a glucose-inhibited division protein B
that appears to be present and in a single copy in all
complete eubacterial genomes so far sequenced. GidB
specifically methylates the N7 position of a guanosine
in 16S rRNA.
Length = 184
Score = 28.4 bits (64), Expect = 2.3
Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 7/69 (10%)
Query: 144 KIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLC 203
K ++ + + A AEE E Y T R V +++ A +LKPGG FL
Sbjct: 92 KKELNLENVTIVHARAEEYQHEEQ-YDVITS----RAVASLNELTEWALPLLKPGGYFLA 146
Query: 204 L--EFSHEE 210
+ + +E
Sbjct: 147 YKGKQAEDE 155
>gnl|CDD|236418 PRK09225, PRK09225, threonine synthase; Validated.
Length = 462
Score = 28.6 bits (65), Expect = 3.6
Identities = 6/28 (21%), Positives = 14/28 (50%), Gaps = 3/28 (10%)
Query: 191 AYRVLKPGGRFLCLEFSHEEFKSMIESA 218
A+ +L F+ + ++ K++I A
Sbjct: 55 AFEILSA---FVGDDIPEDDLKAIIARA 79
>gnl|CDD|234248 TIGR03534, RF_mod_PrmC, protein-(glutamine-N5) methyltransferase,
release factor-specific. Members of this protein family
are HemK (PrmC), a protein once thought to be involved
in heme biosynthesis but now recognized to be a
protein-glutamine methyltransferase that modifies the
peptide chain release factors. All members of the seed
alignment are encoded next to the release factor 1 gene
(prfA) and confirmed by phylogenetic analysis. SIMBAL
analysis (manuscript in prep.) shows the motif
[LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers
specificity for the release factors rather than for
ribosomal protein L3 [Protein fate, Protein modification
and repair].
Length = 251
Score = 28.2 bits (64), Expect = 3.6
Identities = 15/40 (37%), Positives = 26/40 (65%), Gaps = 4/40 (10%)
Query: 184 IDKALSEAYRVLKPGGRFLCLEFSH---EEFKSMIESAGF 220
+ +++A R+LKPGG +L LE + E +++ E+AGF
Sbjct: 196 YRRIIAQAPRLLKPGG-WLLLEIGYDQGEAVRALFEAAGF 234
>gnl|CDD|216568 pfam01555, N6_N4_Mtase, DNA methylase. Members of this family are
DNA methylases. The family contains both N-4
cytosine-specific DNA methylases and N-6
Adenine-specific DNA methylases.
Length = 219
Score = 27.7 bits (62), Expect = 4.6
Identities = 12/39 (30%), Positives = 17/39 (43%), Gaps = 8/39 (20%)
Query: 165 ESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLC 203
+ DS Y + +++ L E RVLKPGG
Sbjct: 21 DKDSIEEY--------LEWLEEWLKEVRRVLKPGGSIFI 51
>gnl|CDD|237615 PRK14121, PRK14121, tRNA (guanine-N(7)-)-methyltransferase;
Provisional.
Length = 390
Score = 28.0 bits (63), Expect = 4.9
Identities = 16/31 (51%), Positives = 17/31 (54%), Gaps = 7/31 (22%)
Query: 188 LSEAYRVLKPGGRF-------LCLEFSHEEF 211
L+EA RVLKPGG L EFS E F
Sbjct: 218 LNEALRVLKPGGTLELRTDSELYFEFSLELF 248
>gnl|CDD|234564 PRK00001, rplC, 50S ribosomal protein L3; Validated.
Length = 210
Score = 27.4 bits (62), Expect = 5.2
Identities = 11/41 (26%), Positives = 18/41 (43%), Gaps = 8/41 (19%)
Query: 164 IESDSYSAYTIAFGIRNVTRIDKAL--------SEAYRVLK 196
+E D Y+A + FG + R++K E R L+
Sbjct: 41 VEKDGYNAVQLGFGDKKEKRVNKPEAGHFAKAGVEPKRHLR 81
>gnl|CDD|202663 pfam03484, B5, tRNA synthetase B5 domain. This domain is found in
phenylalanine-tRNA synthetase beta subunits.
Length = 70
Score = 25.2 bits (56), Expect = 8.1
Identities = 11/35 (31%), Positives = 17/35 (48%)
Query: 200 RFLCLEFSHEEFKSMIESAGFQYVTYENLTFGVVA 234
R L +E S EE K +++ GF+ + T V
Sbjct: 13 RLLGIELSPEEIKKILKRLGFKVEVSDEDTLKVTV 47
>gnl|CDD|223352 COG0275, COG0275, Predicted S-adenosylmethionine-dependent
methyltransferase involved in cell envelope biogenesis
[Cell envelope biogenesis, outer membrane].
Length = 314
Score = 27.2 bits (61), Expect = 8.5
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Query: 183 RIDKALSEAYRVLKPGGRFLCLEF-SHEE 210
+++AL A +LKPGGR + F S E+
Sbjct: 222 ELEEALEAALDLLKPGGRLAVISFHSLED 250
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.140 0.413
Gapped
Lambda K H
0.267 0.0668 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 12,839,787
Number of extensions: 1253162
Number of successful extensions: 1310
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1299
Number of HSP's successfully gapped: 74
Length of query: 241
Length of database: 10,937,602
Length adjustment: 94
Effective length of query: 147
Effective length of database: 6,768,326
Effective search space: 994943922
Effective search space used: 994943922
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.2 bits)