RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1420
(241 letters)
>1vl5_A Unknown conserved protein BH2331; putative methyltransferase,
structural genomics, joint cente structural genomics,
JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP:
c.66.1.41
Length = 260
Score = 126 bits (318), Expect = 9e-36
Identities = 39/252 (15%), Positives = 74/252 (29%), Gaps = 94/252 (37%)
Query: 7 EVFENVAKSYDTMNDAMSFGIHRLWKDI--FIDRLGPTHDTKLLDVAGGTDPLANLLFVL 64
++ + Y ++ IH D+ + + ++LDVA G +A
Sbjct: 5 KIHHHHHHMY------VTSQIHAKGSDLAKLMQIAALKGNEEVLDVATGGGHVA------ 52
Query: 65 RAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIES 124
P + +++A D+ L+ A E
Sbjct: 53 -------NAFAPFVKKVVA-------------------FDLTEDILKVARAFIEGN---- 82
Query: 125 DSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRI 184
G + V +++ +AE++P + + T +
Sbjct: 83 ----------GHQQVE-------------YVQGDAEQMPFTDERFHIVTCRIAAHHFPNP 119
Query: 185 DKALSEAYRVLKPGGRFLCLEFSH---------------------------EEFKSMIES 217
+SEAYRVLK GG+ L ++ S ++ M+E
Sbjct: 120 ASFVSEAYRVLKKGGQLLLVDNSAPENDAFDVFYNYVEKERDYSHHRAWKKSDWLKMLEE 179
Query: 218 AGFQYVTYENLT 229
AGF+
Sbjct: 180 AGFELEELHCFH 191
>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC,
structural genomics, protein structure initiative; HET:
SAM; 2.72A {Aquifex aeolicus}
Length = 219
Score = 119 bits (301), Expect = 1e-33
Identities = 40/253 (15%), Positives = 74/253 (29%), Gaps = 80/253 (31%)
Query: 3 LPMYEVFE-NVAKSYDTMNDAMSFGIHRLWKDIFIDRLGPTHDTKLLDVAGGTDPLANLL 61
+ + F+ + K D + F ++ K G +LDV G L
Sbjct: 1 MSLAHKFDPSKIKKLDDPSRLELFDPEKVLK-----EFGLKEGMTVLDVGTGA---GFYL 52
Query: 62 FVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP 121
L V G++ A ID+ + + +L
Sbjct: 53 PYLSK------MVGE-KGKVYA-------------------IDVQEEMVNYAWEKVNKL- 85
Query: 122 IESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNV 181
G++NV L++ ++P+ ++ +AF +
Sbjct: 86 -------------GLKNVE-------------VLKSEENKIPLPDNTVDFIFMAFTFHEL 119
Query: 182 TRIDKALSEAYRVLKPGGRFLCLEFSH---------------EEFKSMIESAGFQYVTYE 226
+ K L E RV KP +++ E ++E AG +
Sbjct: 120 SEPLKFLEELKRVAKPFAYLAIIDWKKEERDKGPPPEEVYSEWEVGLILEDAGIRVGRVV 179
Query: 227 NL---TFGVVAIH 236
+ FGV A+
Sbjct: 180 EVGKYCFGVYAMI 192
Score = 40.4 bits (95), Expect = 2e-04
Identities = 4/39 (10%), Positives = 11/39 (28%), Gaps = 1/39 (2%)
Query: 65 RAYDQYSF-QVIPVMGQLIAGQWKPYQYLVESIRQFPNQ 102
Y ++ ++ G + + +Y Q
Sbjct: 157 EVYSEWEVGLILEDAGIRVGRVVEVGKYCFGVYAMIVKQ 195
>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics,
PSI-biology, protein structure in northeast structural
genomics; 2.20A {Methanosarcina mazei}
Length = 235
Score = 115 bits (290), Expect = 7e-32
Identities = 17/134 (12%), Positives = 32/134 (23%), Gaps = 46/134 (34%)
Query: 150 PRLRFLEANAEELPIESDSYSAYTIAFGIRNVTR---IDKALSEAYRVLKPGGRFLCLEF 206
+ F NA L S+ + + +V + + E +RVLKPG +EF
Sbjct: 83 GKAEFKVENASSLSFHDSSFDFAVMQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEF 142
Query: 207 SH-------------------------------------------EEFKSMIESAGFQYV 223
+E ++ F+
Sbjct: 143 GQNWHLKLYRKRYLHDFPITKEEGSFLARDPETGETEFIAHHFTEKELVFLLTDCRFEID 202
Query: 224 TYENLTFGVVAIHS 237
+ +
Sbjct: 203 YFRVKELETRTGNK 216
Score = 57.9 bits (140), Expect = 2e-10
Identities = 7/38 (18%), Positives = 11/38 (28%), Gaps = 2/38 (5%)
Query: 65 RAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQ 102
R + F + G +A P E I +
Sbjct: 152 RKRYLHDFPITKEEGSFLARD--PETGETEFIAHHFTE 187
>1xxl_A YCGJ protein; structural genomics, protein structure initiative,
PSI, NEW YORK SGX research center for structural
genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP:
c.66.1.41 PDB: 2glu_A*
Length = 239
Score = 114 bits (287), Expect = 3e-31
Identities = 37/231 (16%), Positives = 64/231 (27%), Gaps = 86/231 (37%)
Query: 23 MSFGIHRLWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLI 82
M+ H + I + ++LD+ G A P + + I
Sbjct: 1 MAHHHHHHSLGLMIKTAECRAEHRVLDIGAGAGHTA-------------LAFSPYVQECI 47
Query: 83 AGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRI 142
+D + + A+E G+ NV
Sbjct: 48 G-------------------VDATKEMVEVASSFAQEK--------------GVENVR-- 72
Query: 143 DKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFL 202
F + AE LP DS+ T + + + + KA+ E RVLK GRFL
Sbjct: 73 -----------FQQGTAESLPFPDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFL 121
Query: 203 CLEFSH---------------------------EEFKSMIESAGFQYVTYE 226
++ E+++M + Y +
Sbjct: 122 LVDHYAPEDPVLDEFVNHLNRLRDPSHVRESSLSEWQAMFSANQLAYQDIQ 172
>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase;
structural genomics, joint center for structural
genomics; HET: MSE SAM; 1.15A {Methanococcus
maripaludis}
Length = 219
Score = 107 bits (270), Expect = 4e-29
Identities = 33/255 (12%), Positives = 68/255 (26%), Gaps = 90/255 (35%)
Query: 9 FENVAKSYDTMNDAMSFGIHRLWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYD 68
+ AK+ D ++ + I+ + + I+R G T T +D+ G L+ L + D
Sbjct: 10 DKKGAKNMDEISKTLFAPIYPIIAENIINRFGITAGT-CIDIGSGPGALSIAL--AKQSD 66
Query: 69 QYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIESDSYS 128
+ A +D N +
Sbjct: 67 ----------FSIRA-------------------LDFSKHMNEIALKNIADA-------- 89
Query: 129 AYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKAL 188
+ + R++ ++ + +PIE + + + A
Sbjct: 90 ------NLND------------RIQIVQGDVHNIPIEDNYADLIVSRGSVFFWEDVATAF 131
Query: 189 SEAYRVLKPGGRFLCLE--------------------------------FSHEEFKSMIE 216
E YR+LK GG+ + E F+++++
Sbjct: 132 REIYRILKSGGKTYIGGGFGNKELRDSISAEMIRKNPDWKEFNRKNISQENVERFQNVLD 191
Query: 217 SAGFQYVTYENLTFG 231
G G
Sbjct: 192 EIGISSYEIILGDEG 206
>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein;
ubiquinone/menaquinone biosynthesis
methyltransferase-relate protein; HET: SAI; 2.35A
{Thermotoga maritima} SCOP: c.66.1.41
Length = 260
Score = 100 bits (251), Expect = 7e-26
Identities = 45/229 (19%), Positives = 78/229 (34%), Gaps = 74/229 (32%)
Query: 1 MKLPMYEVFENVAKSYDTMNDAMSFGI-HRLWKDIFIDRLGPTHDTKLLDVAGGTDPLAN 59
MKL +E ++ +A++YD+M + + + HRL + L ++LD+ GGT +
Sbjct: 13 MKLRSWEFYDRIARAYDSMYETPKWKLYHRLIGSFLEEYLKN--PCRVLDLGGGTGKWSL 70
Query: 60 LLFVLRAYDQYSFQVIPV---MGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEAN 116
L + F+V+ V L + K +EA
Sbjct: 71 FL------QERGFEVVLVDPSKEMLEVAREK--------------------GVKNVVEAK 104
Query: 117 AEELPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAF 176
AE+LP S ++ + + +
Sbjct: 105 AEDLPFPSGAF---------------EAV--------------------------LALGD 123
Query: 177 GIRNVTRIDKALSEAYRVLKPGGRFLCLEFS-HEEFKSMIESAGFQYVT 224
+ V DKA SE RVL P G + + + + MIE + +T
Sbjct: 124 VLSYVENKDKAFSEIRRVLVPDGLLIATVDNFYTFLQQMIEKDAWDQIT 172
Score = 40.6 bits (95), Expect = 2e-04
Identities = 5/43 (11%), Positives = 14/43 (32%)
Query: 62 FVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQID 104
F+ + ++ ++ I + + S P +D
Sbjct: 158 FLQQMIEKDAWDQITRFLKTQTTSVGTTLFSFNSYAFKPEDLD 200
>2gs9_A Hypothetical protein TT1324; methyl transferase, structural
genomics, NPPSFA, national PR protein structural and
functional analyses; HET: SAH; 2.60A {Thermus
thermophilus}
Length = 211
Score = 98.7 bits (246), Expect = 1e-25
Identities = 33/207 (15%), Positives = 58/207 (28%), Gaps = 73/207 (35%)
Query: 7 EVFENVAKSYDTMNDAMSFGIHRLWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRA 66
+ F ++A++Y+ ++ + L P + LL+V GT L L
Sbjct: 1 DPFASLAEAYEAWYGTPLGAYVIAEEERALKGLLPPGE-SLLEVGAGT---GYWLRRLPY 56
Query: 67 YDQYSFQVIPV---MGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIE 123
Q + V L G+ + P ++ A E LP
Sbjct: 57 P-----QKVGVEPSEAMLAVGRRR-------------------APEATWVRAWGEALPFP 92
Query: 124 SDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTR 183
+S+ D + + V
Sbjct: 93 GESF---------------D---------------------------VVLLFTTLEFVED 110
Query: 184 IDKALSEAYRVLKPGGRFLCLEFSHEE 210
+++ L EA RVL+PGG +
Sbjct: 111 VERVLLEARRVLRPGGALVVGVLEALS 137
Score = 29.8 bits (67), Expect = 0.62
Identities = 4/42 (9%), Positives = 11/42 (26%)
Query: 61 LFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQ 102
+ + Q F + L+ + + + P
Sbjct: 148 EKGVLPWAQARFLAREDLKALLGPPEAEGEAVFLAPEAHPPY 189
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown
function, PSI-2, protein structure initiative; 2.09A
{Methanosarcina mazei}
Length = 234
Score = 92.5 bits (230), Expect = 4e-23
Identities = 37/252 (14%), Positives = 82/252 (32%), Gaps = 48/252 (19%)
Query: 5 MYEVFENVAKSYDTMNDAMSFGIHRLWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVL 64
+ F+ V+ YD + T + +LD+ GT L+ L +
Sbjct: 6 IKRKFDAVSGKYDEQRRKFIPCFDDFYGVSVSIASVDTENPDILDLGAGTGLLSAFL--M 63
Query: 65 RAYDQYSFQVI---PVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP 121
Y + +F ++ M L + +F N +++++EA+ +
Sbjct: 64 EKYPEATFTLVDMSEKM-------------LEIAKNRFRG-----NLKVKYIEADYSKYD 105
Query: 122 IESDSYSAYTIAFGIRNVTRIDKIDI---------PNPRLRFLEANAEELPIESDSYSAY 172
E + Y A I ++ DK ++ + + E +
Sbjct: 106 FE-EKYDMVVSALSIHHLEDEDKKELYKRSYSILKESGIFINADLVHGETAFIENLNKTI 164
Query: 173 TIAFGIRNVTRIDKALS--EAYRVLKPGGRFLCLEFSHEEFKSMIESAGFQYVT--YENL 228
+ + ++ + E ++ K + + ++ AGF+ V+ Y+
Sbjct: 165 WRQYVENSGLTEEEIAAGYERSKLDKD--------IEMNQQLNWLKEAGFRDVSCIYKYY 216
Query: 229 TFGVVAIHSGFK 240
F A+ G K
Sbjct: 217 QF---AVMFGRK 225
>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM,
structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus
thermophilus} PDB: 2yr0_A
Length = 263
Score = 88.5 bits (219), Expect = 2e-21
Identities = 30/204 (14%), Positives = 54/204 (26%), Gaps = 60/204 (29%)
Query: 7 EVFENVAKSYDTMNDAMSFGIHRLWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRA 66
A +YD + ++ + + L++ GT +A L + R
Sbjct: 3 SALLRAAYAYDRLRAHPPEVAGQIATAMASAVHPKGEEPVFLELGVGTGRIA-LPLIARG 61
Query: 67 YDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIESDS 126
Y + +D L +
Sbjct: 62 YR--------YIA-----------------------LDADAAMLEVFRQKIAGVD----- 85
Query: 127 YSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDK 186
+++ ++A+A +P+ +S + V K
Sbjct: 86 -----------------------RKVQVVQADARAIPLPDESVHGVIVVHLWHLVPDWPK 122
Query: 187 ALSEAYRVLKPGGRFLCLEFSHEE 210
L+EA RVLKPGG L E
Sbjct: 123 VLAEAIRVLKPGGALLEGWDQAEA 146
>1vlm_A SAM-dependent methyltransferase; possible histamine
methyltransferase, structural genomics, JCSG, protein
struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP:
c.66.1.41
Length = 219
Score = 79.5 bits (196), Expect = 3e-18
Identities = 26/106 (24%), Positives = 40/106 (37%), Gaps = 26/106 (24%)
Query: 152 LRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE------ 205
+ L+ AE LP++ +S+ + I V ++AL EAYR+LK GG +
Sbjct: 86 VFVLKGTAENLPLKDESFDFALMVTTICFVDDPERALKEAYRILKKGGYLIVGIVDRESF 145
Query: 206 --------------------FSHEEFKSMIESAGFQYVTYENLTFG 231
FS EE ++ AGF+ F
Sbjct: 146 LGREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFKVVQTLFK 191
>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative,
structural genomics, NEW YORK SGX research center for
structural genomics; 1.86A {Methanosarcina mazei}
Length = 276
Score = 78.0 bits (192), Expect = 2e-17
Identities = 34/203 (16%), Positives = 56/203 (27%), Gaps = 57/203 (28%)
Query: 9 FENVAKSYDTMNDAMSFGIHRLWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYD 68
Y + + K+L+ G +L +
Sbjct: 3 LTEYVHGYSEREALRLSEQAETLEKLLHHDTVYPPGAKVLEAGCGIGAQTVIL--AKNNP 60
Query: 69 QYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIESDSYS 128
++ + IDI L N E+
Sbjct: 61 D---------AEITS-------------------IDISPESLEKARENTEKN-------- 84
Query: 129 AYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKAL 188
GI+NV +FL+AN LP E S+ + F + ++ ++AL
Sbjct: 85 ------GIKNV-------------KFLQANIFSLPFEDSSFDHIFVCFVLEHLQSPEEAL 125
Query: 189 SEAYRVLKPGGRFLCLEFSHEEF 211
+VLKPGG +E H
Sbjct: 126 KSLKKVLKPGGTITVIEGDHGSC 148
>3bkx_A SAM-dependent methyltransferase; YP_807781.1,
cyclopropane-fatty-acyl-phospholipid synthase-L protein,
methyltransferase domain; 1.85A {Lactobacillus casei}
Length = 275
Score = 75.8 bits (186), Expect = 1e-16
Identities = 27/207 (13%), Positives = 54/207 (26%), Gaps = 58/207 (28%)
Query: 12 VAKSYDTMNDAMSFGIHRLWKDI----------FIDRLGPTHDTKLLDVAGGTDPLANLL 61
+ K D + D M+ G + I + K+L++ G L+ +L
Sbjct: 2 MEKRLDYITDLMALGPTANARTIQRRQTAHRLAIAEAWQVKPGEKILEIGCGQGDLSAVL 61
Query: 62 FVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELP 121
+ QV G + IDI +P
Sbjct: 62 ---------ADQVGS-SGHVTG-------------------IDIASPDYG---------- 82
Query: 122 IESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEEL-PIESDSYSAYTIAFGIRN 180
+ T+ ++ D + F +++L PI + +A +
Sbjct: 83 ------APLTLGQAWNHLLAGPLGDRLT--VHFNTNLSDDLGPIADQHFDRVVLAHSLWY 134
Query: 181 VTRIDKALSEAYRVLKPGGRFLCLEFS 207
+ + E+S
Sbjct: 135 FASANALALLFKNMAAVCDHVDVAEWS 161
>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein
structure initiative, NEW YORK SGX research center for
structural genomics; 1.70A {Bacillus thuringiensis}
Length = 242
Score = 73.4 bits (180), Expect = 6e-16
Identities = 20/105 (19%), Positives = 35/105 (33%), Gaps = 24/105 (22%)
Query: 149 NPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEF-- 206
P L F++ + LP E++ + A + +AL+E RVLK G
Sbjct: 97 GPDLSFIKGDLSSLPFENEQFEAIMAINSLEWTEEPLRALNEIKRVLKSDGYACIAILGP 156
Query: 207 ----------------------SHEEFKSMIESAGFQYVTYENLT 229
EF+ +++ GF+ V +
Sbjct: 157 TAKPRENSYPRLYGKDVVCNTMMPWEFEQLVKEQGFKVVDGIGVY 201
>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2,
protein structure initiative; 2.50A {Sulfolobus
solfataricus}
Length = 170
Score = 68.9 bits (169), Expect = 7e-15
Identities = 11/60 (18%), Positives = 24/60 (40%)
Query: 151 RLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHEE 210
+ + ++ I +S A ++ +SE R+LK GR + +++ E
Sbjct: 58 KFDSVITLSDPKEIPDNSVDFILFANSFHDMDDKQHVISEVKRILKDDGRVIIIDWRKEN 117
>3ege_A Putative methyltransferase from antibiotic biosyn pathway;
YP_324569.1, putative methyltransferase from antibiotic
BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}
Length = 261
Score = 63.8 bits (155), Expect = 2e-12
Identities = 11/62 (17%), Positives = 24/62 (38%)
Query: 149 NPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH 208
+P++ + AE L + S I + + ++K+ E R+++ G L
Sbjct: 75 HPQVEWFTGYAENLALPDKSVDGVISILAIHHFSHLEKSFQEMQRIIRDGTIVLLTFDIR 134
Query: 209 EE 210
Sbjct: 135 LA 136
>1ve3_A Hypothetical protein PH0226; dimer, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, unknown function, NPPSFA; HET: SAM; 2.10A
{Pyrococcus horikoshii} SCOP: c.66.1.43
Length = 227
Score = 62.2 bits (151), Expect = 6e-12
Identities = 31/226 (13%), Positives = 63/226 (27%), Gaps = 70/226 (30%)
Query: 6 YEVFENVAKSYDTMNDAMSFGIHRLWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLR 65
++ + V +Y +N + + + + K+LD+A G + LL
Sbjct: 3 FKEYYRVFPTYTDINSQEYRSRIETLEPLLMKYMKK--RGKVLDLACGVGGFSFLL---- 56
Query: 66 AYDQYSFQVI-----PVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEEL 120
+ Y F+V+ M IR+ + F+ +A +L
Sbjct: 57 --EDYGFEVVGVDISEDM-----------------IRKAREYAKSRESNVEFIVGDARKL 97
Query: 121 PIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRN 180
E ++ I + ++
Sbjct: 98 SFEDKTFDYVIFIDSIVHFEPLEL------------------------------------ 121
Query: 181 VTRIDKALSEAYRVLKPGGRFLCLEFSHEEFKSMIESAGFQYVTYE 226
++ E RVLKP G+F+ E ++ + Y
Sbjct: 122 ----NQVFKEVRRVLKPSGKFIMYFTDLRELLPRLKESLVVGQKYW 163
>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding
protein, protein structure, N phosphoprotein, nuclear
protein; HET: SAH; 2.00A {Homo sapiens}
Length = 215
Score = 61.9 bits (150), Expect = 8e-12
Identities = 22/92 (23%), Positives = 35/92 (38%), Gaps = 6/92 (6%)
Query: 141 RIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGR 200
+ D+ + R + ++P+E +S + T I L EA RVLKPGG
Sbjct: 88 PVHCFDLASLDPRVTVCDMAQVPLEDESVDVAVFCLSLMG-TNIRDFLEEANRVLKPGGL 146
Query: 201 FLCLE-----FSHEEFKSMIESAGFQYVTYEN 227
E F + GF+ V+ +
Sbjct: 147 LKVAEVSSRFEDVRTFLRAVTKLGFKIVSKDL 178
>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon
SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A
Length = 383
Score = 61.3 bits (148), Expect = 4e-11
Identities = 32/244 (13%), Positives = 64/244 (26%), Gaps = 80/244 (32%)
Query: 16 YDTMNDAMSFGIHRLWKDIF-IDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQV 74
+ D + + + + G +LD+ GT +++ ++
Sbjct: 55 RKILADIADEVLEKFYGCGSTLPADGSLEGATVLDLGCGT---GRDVYLAS-------KL 104
Query: 75 IPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIESDSYSAYTIAF 134
+ G++I +D+ + +L E + +
Sbjct: 105 VGEHGKVIG-------------------VDMLDNQLEVARKYVEYHA------EKFFGSP 139
Query: 135 GIRNVTRIDKIDIPNPRLRFLEANAEEL------PIESDSYSAYTIAFGIRNVTRIDKAL 188
NV RFL+ E L + S T
Sbjct: 140 SRSNV-------------RFLKGFIENLATAEPEGVPDSSVDIVISNCVCNLSTNKLALF 186
Query: 189 SEAYRVLKPGGRFLCLE-------------------------FSHEEFKSMIESAGFQYV 223
E +RVL+ GG + E+F+ ++ AGF+ V
Sbjct: 187 KEIHRVLRDGGELYFSDVYADRRLSEAAQQDPILYGECLGGALYLEDFRRLVAEAGFRDV 246
Query: 224 TYEN 227
+
Sbjct: 247 RLVS 250
>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2,
protein STRU initiative, northeast structural genomics
consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} PDB:
2gh1_A
Length = 284
Score = 57.6 bits (139), Expect = 4e-10
Identities = 16/80 (20%), Positives = 30/80 (37%), Gaps = 1/80 (1%)
Query: 149 NPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH 208
FLE +A E+ + D Y + ++T + L + +K GG+ +C E
Sbjct: 71 PYDSEFLEGDATEIELN-DKYDIAICHAFLLHMTTPETMLQKMIHSVKKGGKIICFEPHW 129
Query: 209 EEFKSMIESAGFQYVTYENL 228
+ G + + L
Sbjct: 130 ISNMASYLLDGEKQSEFIQL 149
>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; HET: SAH;
2.00A {Corynebacterium glutamicum atcc 13032}
Length = 203
Score = 55.6 bits (134), Expect = 1e-09
Identities = 15/92 (16%), Positives = 28/92 (30%), Gaps = 20/92 (21%)
Query: 150 PRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRID--KALSEAYRVLKPGGRFLCLEF- 206
P + F +L ++ + + ++ + AL ++ GG L F
Sbjct: 84 PSVTFHHGTITDLSDSPKRWAGLLAWYSLIHMGPGELPDALVALRMAVEDGGGLLMSFFS 143
Query: 207 -----------------SHEEFKSMIESAGFQ 221
E +E+AGFQ
Sbjct: 144 GPSLEPMYHPVATAYRWPLPELAQALETAGFQ 175
>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A
{Lechevalieria aerocolonigenes}
Length = 273
Score = 55.6 bits (134), Expect = 2e-09
Identities = 22/106 (20%), Positives = 40/106 (37%), Gaps = 27/106 (25%)
Query: 151 RLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEF---- 206
R+ F A+A +LP E S+ A + ++ +AL E RVL+PGG +F
Sbjct: 112 RVTFSYADAMDLPFEDASFDAVWALESLHHMPDRGRALREMARVLRPGGTVAIADFVLLA 171
Query: 207 -----------------------SHEEFKSMIESAGFQYVTYENLT 229
+E++S + A + +++
Sbjct: 172 PVEGAKKEAVDAFRAGGGVLSLGGIDEYESDVRQAELVVTSTVDIS 217
>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase
domain, structural genomics; HET: NHE CIT; 2.00A
{Corynebacterium glutamicum atcc 13032}
Length = 195
Score = 54.4 bits (131), Expect = 2e-09
Identities = 16/83 (19%), Positives = 28/83 (33%), Gaps = 12/83 (14%)
Query: 150 PRLRFLEANAEELPIESDSY----SAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 205
P R++ + I + SA G + AL+ +R L GR + +
Sbjct: 89 PEARWVVGDLSVDQISETDFDLIVSAGN-VMGFLAEDGREPALANIHRALGADGRAV-IG 146
Query: 206 FSH------EEFKSMIESAGFQY 222
F +F + E G +
Sbjct: 147 FGAGRGWVFGDFLEVAERVGLEL 169
>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2,
protein structure initiative; 2.80A {Bacillus
thuringiensis serovarkonkukian}
Length = 220
Score = 54.9 bits (132), Expect = 2e-09
Identities = 16/125 (12%), Positives = 36/125 (28%), Gaps = 38/125 (30%)
Query: 151 RLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDK--ALSEAYRVLKPGGRFLCLEF-- 206
E + + S + ++T +K A+++ ++L GG+ + +
Sbjct: 90 EFSITEGDFLSFEVP-TSIDTIVSTYAFHHLTDDEKNVAIAKYSQLLNKGGKIVFADTIF 148
Query: 207 -------------------------------SHEEFKSMIESAGFQYVTYENLTFGVVAI 235
+++ E+ GF VT+ L V +
Sbjct: 149 ADQDAYDKTVEAAKQRGFHQLANDLQTEYYTRIPVMQTIFENNGFH-VTFTRL-NHFVWV 206
Query: 236 HSGFK 240
K
Sbjct: 207 MEATK 211
>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A
{Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A*
3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*
Length = 266
Score = 54.8 bits (132), Expect = 4e-09
Identities = 16/107 (14%), Positives = 39/107 (36%), Gaps = 26/107 (24%)
Query: 149 NPRLRFLEANAEELPIESDSY-SAYTI-AFGIRNVTRIDKALSEAYRVLKPGGRFLCLEF 206
N ++ F + +++ Y+ A ++ +K + Y+ LKP G L ++
Sbjct: 101 NNKIIFEANDILTKEFPENNFDLIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLITDY 160
Query: 207 ------------------------SHEEFKSMIESAGFQYVTYENLT 229
+ EE+ ++ + F+ V ++L+
Sbjct: 161 CATEKENWDDEFKEYVKQRKYTLITVEEYADILTACNFKNVVSKDLS 207
>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250,
NESG, structural genomics, PSI-2; HET: SAM; 1.68A
{Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A*
3t7r_A* 3t7t_A*
Length = 267
Score = 54.1 bits (130), Expect = 6e-09
Identities = 17/101 (16%), Positives = 32/101 (31%), Gaps = 24/101 (23%)
Query: 151 RLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEF---- 206
R+ + + ++LP ++ I N+ ++ L+E + LK GG E
Sbjct: 97 RVTGIVGSMDDLPFRNEELDLIWSEGAIYNIGF-ERGLNEWRKYLKKGGYLAVSECSWFT 155
Query: 207 -------------------SHEEFKSMIESAGFQYVTYENL 228
+ + I AG+ V L
Sbjct: 156 DERPAEINDFWMDAYPEIDTIPNQVAKIHKAGYLPVATFIL 196
>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.30A {Bacteroides thetaiotaomicron}
PDB: 3t0i_A* 3svz_A* 3sxj_A*
Length = 257
Score = 53.3 bits (128), Expect = 1e-08
Identities = 15/102 (14%), Positives = 32/102 (31%), Gaps = 24/102 (23%)
Query: 151 RLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEF---- 206
R++ + + + LP +++ I N+ ++ ++E + LK GG E
Sbjct: 97 RVKGITGSMDNLPFQNEELDLIWSEGAIYNIGF-ERGMNEWSKYLKKGGFIAVSEASWFT 155
Query: 207 -------------------SHEEFKSMIESAGFQYVTYENLT 229
+E AG+ + L
Sbjct: 156 SERPAEIEDFWMDAYPEISVIPTCIDKMERAGYTPTAHFILP 197
>3g5l_A Putative S-adenosylmethionine dependent methyltransferase;
structural genomics, PSI-2, protein structure
initiative; 2.35A {Listeria monocytogenes str}
Length = 253
Score = 53.0 bits (127), Expect = 1e-08
Identities = 20/103 (19%), Positives = 37/103 (35%), Gaps = 10/103 (9%)
Query: 127 YSAYTIAFGIRNVTRID---------KIDIPNPRLRFLEANAEELPIESDSYSAYTIAFG 177
+ Y G + V ID K +P + + + E++ IE D+Y+ +
Sbjct: 58 HCIYAAEHGAKKVLGIDLSERMLTEAKRKTTSPVVCYEQKAIEDIAIEPDAYNVVLSSLA 117
Query: 178 IRNVTRIDKALSEAYRVLKPGGRFLCLEFSHEEFKSMIESAGF 220
+ + D + Y LK G F+ H F + +
Sbjct: 118 LHYIASFDDICKKVYINLKSSGSFIFSVE-HPVFTADGRQDWY 159
>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET:
PGE GOL; 2.00A {Clostridium acetobutylicum}
Length = 209
Score = 52.2 bits (125), Expect = 2e-08
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 6/68 (8%)
Query: 149 NPRLRFLEANAEELPIESDS----YSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCL 204
N +L + + +LP + +S YS TI +N + +A+ E RVLKPGG
Sbjct: 70 NFKLNISKGDIRKLPFKDESMSFVYSYGTIFHMRKN--DVKEAIDEIKRVLKPGGLACIN 127
Query: 205 EFSHEEFK 212
+ ++ +
Sbjct: 128 FLTTKDER 135
>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase;
NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}
Length = 243
Score = 51.7 bits (124), Expect = 4e-08
Identities = 16/115 (13%), Positives = 40/115 (34%), Gaps = 11/115 (9%)
Query: 127 YSAYTIAFGIRNVTRID---------KIDIPNPRLRFLEANAEELPIESDSYSAYTIAFG 177
+ + G V +D + P+ + + A+ ++L + DS+ +
Sbjct: 57 FCRWAHEHGASYVLGLDLSEKMLARARAAGPDTGITYERADLDKLHLPQDSFDLAYSSLA 116
Query: 178 IRNVTRIDKALSEAYRVLKPGGRFLCLEFSHEEFKSMIESAGFQYVTYENLTFGV 232
+ V + + ++ L PGG F+ H + + + T+ +
Sbjct: 117 LHYVEDVARLFRTVHQALSPGGHFVFSTE-HPIYMAPARPG-WAIDAEGRRTWPI 169
>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural
genomics, SGC, structural genomics consortium; HET: SAH;
1.75A {Homo sapiens} SCOP: c.66.1.42
Length = 241
Score = 51.6 bits (123), Expect = 4e-08
Identities = 31/169 (18%), Positives = 56/169 (33%), Gaps = 44/169 (26%)
Query: 101 NQIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTR---------IDKIDI---- 147
+ IDI + R +FL+ E P ++ + A GI +T+ +D +DI
Sbjct: 56 SSIDINSSR-KFLQRFLREGPNKTGTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDF 114
Query: 148 -----------PNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRID--KALSEAYRV 194
+ ++ E DSY I + I ++T + L
Sbjct: 115 LVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGS 174
Query: 195 LKPGGRFLCLE-----------------FSHEEFKSMIESAGFQYVTYE 226
L+P G + + + + +I SAG + E
Sbjct: 175 LRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSAGLSLLAEE 223
>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural
genomics, protein structure initiative, PSI-2; 1.95A
{Galdieria sulphuraria} SCOP: c.66.1.18
Length = 297
Score = 51.4 bits (123), Expect = 6e-08
Identities = 16/104 (15%), Positives = 31/104 (29%), Gaps = 26/104 (25%)
Query: 151 RLRFLEANAEELPIESDSY-SAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEF--- 206
+ + E+P E +SY ++ + + K E RVLKP G +
Sbjct: 133 NITVKYGSFLEIPCEDNSYDFIWSQDAFL-HSPDKLKVFQECARVLKPRGVMAITDPMKE 191
Query: 207 ---------------------SHEEFKSMIESAGFQYVTYENLT 229
S ++S+ + G + +
Sbjct: 192 DGIDKSSIQPILDRIKLHDMGSLGLYRSLAKECGLVTLRTFSRP 235
>3ocj_A Putative exported protein; structural genomics, PSI-2, protein
structure initiative, MI center for structural genomics,
MCSG; HET: PLM; 1.39A {Bordetella parapertussis}
Length = 305
Score = 49.7 bits (118), Expect = 2e-07
Identities = 17/136 (12%), Positives = 36/136 (26%), Gaps = 45/136 (33%)
Query: 149 NPRLRFLEANAEELPIESDSYSAYTIAFGIRNVT---RIDKALSEAYRVLKPGGRFLCLE 205
++ +A +L + Y T R+ + ++ LKPGG +
Sbjct: 169 AGQITLHRQDAWKLDTR-EGYDLLTSNGLNIYEPDDARVTELYRRFWQALKPGGALVTSF 227
Query: 206 F-----------------------------------------SHEEFKSMIESAGFQYVT 224
+H + ++ +E AGF +
Sbjct: 228 LTPPPALSPDSPWDMQAIDPHDLQLQQLVFTRLIQPRWNALRTHAQTRAQLEEAGFTDLR 287
Query: 225 YENLTFGVVAIHSGFK 240
+E+ + K
Sbjct: 288 FEDDRARLFPTVIARK 303
>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1,
putative methyltransferase; 1.90A {Anabaena variabilis
atcc 29413}
Length = 279
Score = 47.4 bits (113), Expect = 9e-07
Identities = 16/67 (23%), Positives = 28/67 (41%), Gaps = 1/67 (1%)
Query: 150 PRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHE 209
P L F A+A ++ A + V + A++ ++ LK GGRF+
Sbjct: 100 PHLHFDVADARNFRVD-KPLDAVFSNAMLHWVKEPEAAIASIHQALKSGGRFVAEFGGKG 158
Query: 210 EFKSMIE 216
K ++E
Sbjct: 159 NIKYILE 165
>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold,
protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo
sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A*
2aox_A* 1jqe_A* 2aow_A*
Length = 292
Score = 47.4 bits (112), Expect = 1e-06
Identities = 13/113 (11%), Positives = 33/113 (29%), Gaps = 32/113 (28%)
Query: 146 DIPNPRLRFLEANAEEL------PIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGG 199
++ N + + + + E E + + + V I L + +L
Sbjct: 107 NLENVKFAWHKETSSEYQSRMLEKKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNA 166
Query: 200 RFLCLEFSH--------------------------EEFKSMIESAGFQYVTYE 226
+ L + S ++ M+++ G +Y Y+
Sbjct: 167 KMLIIVVSGSSGWDKLWKKYGSRFPQDDLCQYITSDDLTQMLDNLGLKYECYD 219
>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics
consortium (NESG), PSI-2, protein structure initiative,
unknown function; NMR {Synechocystis} PDB: 3mer_A
Length = 202
Score = 46.0 bits (109), Expect = 2e-06
Identities = 13/64 (20%), Positives = 30/64 (46%)
Query: 149 NPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH 208
++ +++N + I +D++ F + + + Y+ LKPGG F+ F+
Sbjct: 75 GVKITTVQSNLADFDIVADAWEGIVSIFCHLPSSLRQQLYPKVYQGLKPGGVFILEGFAP 134
Query: 209 EEFK 212
E+ +
Sbjct: 135 EQLQ 138
>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET:
SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*
Length = 218
Score = 46.1 bits (109), Expect = 2e-06
Identities = 8/63 (12%), Positives = 21/63 (33%), Gaps = 3/63 (4%)
Query: 150 PRLRFLEANAEELPIESDSYSAYTIAFGIRNVTR--IDKALSEAYRVLKPGGRFLCLEFS 207
+ F + + + + + A A + +V + + PGG ++ +
Sbjct: 90 DNVEFRQQDLFDWTPD-RQWDAVFFAHWLAHVPDDRFEAFWESVRSAVAPGGVVEFVDVT 148
Query: 208 HEE 210
E
Sbjct: 149 DHE 151
>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure
initiative dependent methyltransferase; HET: SAI; 1.94A
{Leishmania major} SCOP: c.66.1.42
Length = 254
Score = 46.2 bits (109), Expect = 2e-06
Identities = 17/97 (17%), Positives = 30/97 (30%), Gaps = 20/97 (20%)
Query: 150 PRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRID--KALSEAYRVLKPGGRFLCLEF- 206
P +F+ A+ E + ++Y I + +T D K + L P G E
Sbjct: 140 PVGKFILASMETATLPPNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENC 199
Query: 207 -----------------SHEEFKSMIESAGFQYVTYE 226
S +K + +G + V
Sbjct: 200 STGDRFLVDKEDSSLTRSDIHYKRLFNESGVRVVKEA 236
>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold,
methyltransferase fold, SAM-dependent methyltransferase;
HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB:
3vc2_A*
Length = 312
Score = 44.5 bits (105), Expect = 1e-05
Identities = 15/106 (14%), Positives = 31/106 (29%), Gaps = 30/106 (28%)
Query: 151 RLRFLEANAEELPIESDSY-SAYTI-AFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH 208
+R N + P + + +++ + + + SE R LK GGR++ +
Sbjct: 168 HVRSRVCNMLDTPFDKGAVTASWNNESTMYVD---LHDLFSEHSRFLKVGGRYVTITGCW 224
Query: 209 -------------------------EEFKSMIESAGFQYVTYENLT 229
E+ + T +LT
Sbjct: 225 NPRYGQPSKWVSQINAHFECNIHSRREYLRAMADNRLVPHTIVDLT 270
>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium,
SGC, methyltransferase, LOC84291, transferase; HET: SAH;
1.30A {Homo sapiens}
Length = 215
Score = 43.9 bits (103), Expect = 1e-05
Identities = 25/102 (24%), Positives = 36/102 (35%), Gaps = 25/102 (24%)
Query: 135 GIRNVTRID----------KIDIPNPRLRFLEANAEELPIESDSY--------------- 169
G NVT +D P+LR+ + +L S S+
Sbjct: 64 GFPNVTSVDYSSVVVAAMQACYAHVPQLRWETMDVRKLDFPSASFDVVLEKGTLDALLAG 123
Query: 170 SAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHEEF 211
V +D+ LSE RVL PGGRF+ + + F
Sbjct: 124 ERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAAPHF 165
>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S
rRNA, NESG, structural genomics, PSI, protein structure
initiative; HET: SAM; 2.80A {Escherichia coli} SCOP:
c.66.1.33
Length = 269
Score = 41.8 bits (98), Expect = 8e-05
Identities = 17/99 (17%), Positives = 27/99 (27%), Gaps = 22/99 (22%)
Query: 149 NPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH 208
P++ F A++ LP S A + E RV+KPGG +
Sbjct: 129 YPQVTFCVASSHRLPFSDTSMDAIIRIYAPCK-------AEELARVVKPGGWVITATPGP 181
Query: 209 EEFKSMIES---------------AGFQYVTYENLTFGV 232
+ GF L + +
Sbjct: 182 RHLMELKGLIYNEVHLHAPHAEQLEGFTLQQSAELCYPM 220
Score = 28.0 bits (62), Expect = 2.4
Identities = 7/33 (21%), Positives = 12/33 (36%)
Query: 107 NPRLRFLEANAEELPIESDSYSAYTIAFGIRNV 139
P++ F A++ LP S A +
Sbjct: 129 YPQVTFCVASSHRLPFSDTSMDAIIRIYAPCKA 161
>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint
center for structural genomics, JCSG; HET: MSE; 1.90A
{Exiguobacterium sibiricum 255-15}
Length = 243
Score = 41.6 bits (98), Expect = 8e-05
Identities = 13/58 (22%), Positives = 23/58 (39%), Gaps = 5/58 (8%)
Query: 149 NPRLRFLEANAEELPIESDSYSAYTIAFG----IRNVTRIDKALSEAYRVLKPGGRFL 202
N + F + EL + + A TI ++ + + A R+L GG+ L
Sbjct: 78 NRHVDFWVQDMRELELP-EPVDAITILCDSLNYLQTEADVKQTFDSAARLLTDGGKLL 134
>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein
structure initiative, MCSG, midwest center for
structural genomics; 2.19A {Deinococcus radiodurans}
Length = 226
Score = 40.8 bits (95), Expect = 1e-04
Identities = 13/81 (16%), Positives = 23/81 (28%), Gaps = 10/81 (12%)
Query: 150 PRLRFLEANA-EELPIESDS-YSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFS 207
P E N ELP + + G + + + P FL +
Sbjct: 91 PHADVYEWNGKGELPAGLGAPFGLIVSRRGPTS------VILRLPELAAPDAHFLYVGPR 144
Query: 208 H--EEFKSMIESAGFQYVTYE 226
E + + G+ V +
Sbjct: 145 LNVPEVPERLAAVGWDIVAED 165
>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein
structure initiative, PSI, center for eukaryotic
structural genomics; HET: MSE SAH T8N; 1.12A
{Saccharomyces cerevisiae}
Length = 299
Score = 40.8 bits (95), Expect = 2e-04
Identities = 8/77 (10%), Positives = 22/77 (28%), Gaps = 7/77 (9%)
Query: 141 RIDKIDIPNPRLRFLEANAEEL------PIESDSYSAYTIAFGIRNVTRIDKALSEAYRV 194
+ + F +++++ ++ T + +K AY
Sbjct: 80 IKEGSPDTYKNVSFKISSSDDFKFLGADSVDKQKIDMITAVECA-HWFDFEKFQRSAYAN 138
Query: 195 LKPGGRFLCLEFSHEEF 211
L+ G ++ F
Sbjct: 139 LRKDGTIAIWGYADPIF 155
>1wzn_A SAM-dependent methyltransferase; structural genomics, riken
structural genomics/proteomics initiative, RSGI; HET:
SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43
Length = 252
Score = 39.4 bits (92), Expect = 4e-04
Identities = 15/62 (24%), Positives = 28/62 (45%), Gaps = 4/62 (6%)
Query: 144 KIDIPNPRLRFLEANAEELPIESDSYSAYTI---AFGIRNVTRIDKALSEAYRVLKPGGR 200
K N ++ FL+ + E+ + + + A T+ + + K S+ LKPGG
Sbjct: 82 KAKERNLKIEFLQGDVLEIAFK-NEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGV 140
Query: 201 FL 202
F+
Sbjct: 141 FI 142
>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold,
iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens}
PDB: 2yui_A
Length = 176
Score = 39.1 bits (90), Expect = 4e-04
Identities = 13/79 (16%), Positives = 26/79 (32%), Gaps = 16/79 (20%)
Query: 158 NAEELPIESDSYSAY----TIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH----- 208
N ++L + S++ + + L+E R+L+PGG E
Sbjct: 50 NIKQLLQSAHKESSFDIILSGLVPGSTTLHSAEILAEIARILRPGGCLFLKEPVETAVDN 109
Query: 209 -------EEFKSMIESAGF 220
+ S + +G
Sbjct: 110 NSKVKTASKLCSALTLSGL 128
>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH;
1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A*
3mte_A*
Length = 225
Score = 38.6 bits (89), Expect = 7e-04
Identities = 21/122 (17%), Positives = 34/122 (27%), Gaps = 33/122 (27%)
Query: 90 QYLVESIRQFPNQ----IDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKI 145
+ + + N ID L + + P + G+ NV
Sbjct: 37 RNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSK----------GGLSNV------ 80
Query: 146 DIPNPRLRFLEANAEELPIE-SDSYSAYTIAF---GIRNVTRIDKA--LSEAYRVLKPGG 199
F+ A AE LP E + + +I F + LS + K
Sbjct: 81 -------VFVIAAAESLPFELKNIADSISILFPWGTLLEYVIKPNRDILSNVADLAKKEA 133
Query: 200 RF 201
F
Sbjct: 134 HF 135
>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine,
structural genomics structure initiative, PSI; HET: SAM;
2.20A {Clostridium thermocellum atcc 27405}
Length = 197
Score = 38.4 bits (89), Expect = 8e-04
Identities = 12/79 (15%), Positives = 25/79 (31%), Gaps = 13/79 (16%)
Query: 151 RLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDK-----------ALSEAYRVLKPGG 199
R+ ++ + + D + F + + D ALS+A +L GG
Sbjct: 75 RVTLIKDGHQNMDKYIDCPVK-AVMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGG 133
Query: 200 RFLCLEFS-HEEFKSMIES 217
+ + + E
Sbjct: 134 IITVVIYYGGDTGFEEKEK 152
>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide
antibiotics biosynthesis, structural genomics; 2.00A
{Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*
Length = 299
Score = 38.4 bits (89), Expect = 0.001
Identities = 11/58 (18%), Positives = 22/58 (37%), Gaps = 4/58 (6%)
Query: 148 PNPRLRFLEANAEELPIESDSYSAYTIAFG-IRNVTRID--KALSEAYRVLKPGGRFL 202
R ++ + ++ + I+ G I + D + L+PGG+FL
Sbjct: 131 VRDRCTLVQGDMSAFALD-KRFGTVVISSGSINELDEADRRGLYASVREHLEPGGKFL 187
Score = 29.5 bits (66), Expect = 0.89
Identities = 25/244 (10%), Positives = 59/244 (24%), Gaps = 53/244 (21%)
Query: 10 ENVAKSYDTMNDAMSFGIHRLWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQ 69
E A +Y D + F R GP +L++A G L
Sbjct: 53 EGAADTYR---DLIQDADGTSEAREFATRTGPVSG-PVLELAAGMGRLTFPF------LD 102
Query: 70 YSFQVI-----PVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIES 124
++V + L ++ R ++ + ++
Sbjct: 103 LGWEVTALELSTSV-------------LAAFRKRLAEAPADVRDRCTLVQGDMSAFALD- 148
Query: 125 DSYSAYTIAFG-------------IRNVTRIDK------IDIPNPRLRFLEANAEELPIE 165
+ I+ G +V + + + E + +
Sbjct: 149 KRFGTVVISSGSINELDEADRRGLYASVREHLEPGGKFLLSLAMSEAAESEPLERKQELP 208
Query: 166 SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE----FSHEEFKSMIESAGFQ 221
S Y + I + ++ +C + ++ + +GF
Sbjct: 209 GRSGRRYVLHVRHLPAEEIQE-ITIHPADETTDPFVVCTHRRRLLAPDQVVRELVRSGFD 267
Query: 222 YVTY 225
+
Sbjct: 268 VIAQ 271
>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding,
DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A
{Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*
Length = 263
Score = 37.9 bits (88), Expect = 0.002
Identities = 11/58 (18%), Positives = 19/58 (32%), Gaps = 5/58 (8%)
Query: 149 NPRLRFLEANAEELPIESDSYSAYTIAFG----IRNVTRIDKALSEAYRVLKPGGRFL 202
NP + + + +SA T F + +D AL + P G +
Sbjct: 92 NPDAVLHHGDMRDFSLG-RRFSAVTCMFSSIGHLAGQAELDAALERFAAHVLPDGVVV 148
Score = 31.8 bits (72), Expect = 0.16
Identities = 40/271 (14%), Positives = 67/271 (24%), Gaps = 75/271 (27%)
Query: 4 PMYEVFENVAKSYDTMNDAMSFGIHRLWKDI--FIDRLGPTHDTKLLDVAGGTDPLANLL 61
P + +A+ YD ++ HR D+ + R P LLDVA GT L
Sbjct: 10 PQADYSGEIAELYDLVHQGKGKDYHREAADLAALVRRHSP-KAASLLDVACGTGMHLRHL 68
Query: 62 FVLRAYDQYSFQVI-----PVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEAN 116
V M + R+ NP +
Sbjct: 69 ------ADSFGTVEGLELSADM--------------LAIARRR-------NPDAVLHHGD 101
Query: 117 AEELPIESDSYSAYTIAFG--------------IRNVTRIDK------IDIPNPRLRFLE 156
+ + +SA T F + ++ F
Sbjct: 102 MRDFSLG-RRFSAVTCMFSSIGHLAGQAELDAALERFAAHVLPDGVVVVEPWWFPENFTP 160
Query: 157 ANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH-------E 209
+E+ + ++ R + Y V P E SH E
Sbjct: 161 GYVAAGTVEAGGTTVTRVSHSSREGEATRIEVH--YLVAGPDRGITHHEESHRITLFTRE 218
Query: 210 EFKSMIESAGFQYVTYENLTFGVVAIHSGFK 240
+++ +AG V + G
Sbjct: 219 QYERAFTAAGLS----------VEFMPGGPS 239
>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural
genomics, joint center for structural genom JCSG; HET:
SAH; 2.10A {Pseudomonas putida KT2440}
Length = 227
Score = 37.9 bits (88), Expect = 0.002
Identities = 10/65 (15%), Positives = 22/65 (33%), Gaps = 11/65 (16%)
Query: 148 PNPRLRFLEANAEELPIESDSY----SAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLC 203
+ + ++P+ Y + + + I + LS +L PGG +
Sbjct: 97 EVHLASYAQLAEAKVPVG-KDYDLICANFALLH-----QDIIELLSAMRTLLVPGGALVI 150
Query: 204 LEFSH 208
+ H
Sbjct: 151 -QTLH 154
>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate,
antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A
{Streptomyces venezuelae}
Length = 239
Score = 37.0 bits (86), Expect = 0.003
Identities = 9/58 (15%), Positives = 21/58 (36%), Gaps = 5/58 (8%)
Query: 149 NPRLRFLEANAEELPIESDSYSAYTIAFG----IRNVTRIDKALSEAYRVLKPGGRFL 202
P + + + + +SA F ++ + A++ L+PGG +
Sbjct: 82 LPDATLHQGDMRDFRLG-RKFSAVVSMFSSVGYLKTTEELGAAVASFAEHLEPGGVVV 138
Score = 29.3 bits (66), Expect = 0.86
Identities = 10/84 (11%), Positives = 25/84 (29%), Gaps = 9/84 (10%)
Query: 145 IDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCL 204
++ F + + D + ++ +R + + V PG
Sbjct: 139 VEPWWFPETFADGWVSADVVRRDGRTVARVSHSVREGNATRMEVH--FTVADPGKGVRHF 196
Query: 205 EFSH-------EEFKSMIESAGFQ 221
H E+++ +AG +
Sbjct: 197 SDVHLITLFHQAEYEAAFTAAGLR 220
>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural
genomics, protein structure initiative, PSI; 2.50A
{Clostridium acetobutylicum} SCOP: c.66.1.43
Length = 246
Score = 37.0 bits (86), Expect = 0.003
Identities = 16/88 (18%), Positives = 28/88 (31%), Gaps = 5/88 (5%)
Query: 143 DKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFG----IRNVTRIDKALSEAYRVLKPG 198
+K + R + L I + T I + + K LK G
Sbjct: 77 NKFRSQGLKPRLACQDISNLNIN-RKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEG 135
Query: 199 GRFLCLEFSHEEFKSMIESAGFQYVTYE 226
G F+ S+ + ++ + F Y E
Sbjct: 136 GVFIFDINSYYKLSQVLGNNDFNYDDDE 163
>1im8_A YECO; methyltransferase, adenosylhomocysteine, structural genomics
hypothetical protein, structure 2 function project, S2F,
TR; HET: SAI; 2.20A {Haemophilus influenzae RD} SCOP:
c.66.1.14
Length = 244
Score = 36.8 bits (84), Expect = 0.004
Identities = 34/243 (13%), Positives = 62/243 (25%), Gaps = 40/243 (16%)
Query: 10 ENVAKSYDTMNDAMSFGIHRLWKDI-FIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYD 68
ENVA+ + M G + I + T D+ + D+
Sbjct: 24 ENVAEVFPDMIQRSVPGYSNIITAIGMLAERFVTADSNVYDLGCSRGAATLSARRNINQP 83
Query: 69 QYSFQVI---PVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEELPIESD 125
I M + Y + L + + I++
Sbjct: 84 NVKIIGIDNSQPMVERCRQHIAAYH---------------SEIPVEILCNDIRHVEIKNA 128
Query: 126 SYSAYTIAFGIRNVT-------RIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGI 178
S +I + PN L E E + F
Sbjct: 129 SMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKINHLLIDLHHQFKR 188
Query: 179 RN---VTRIDKALSEAYRVLKPGGRFLCLEFSHEEFKSMIESAGFQYVT--YENLTFGV- 232
N + + + V++ S E K +++ GF V ++ FG
Sbjct: 189 ANGYSELEVSQKRTALENVMRT--------DSIETHKVRLKNVGFSQVELWFQCFNFGSM 240
Query: 233 VAI 235
+A+
Sbjct: 241 IAV 243
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 36.8 bits (84), Expect = 0.006
Identities = 24/179 (13%), Positives = 52/179 (29%), Gaps = 49/179 (27%)
Query: 73 QVIPVMGQLIAGQWKPYQYLVESIRQFPNQID----IPNPRL-RFLEANAEELPIESDSY 127
P +IA ESIR D + +L +E++ L E Y
Sbjct: 324 TTNPRRLSIIA----------ESIRDGLATWDNWKHVNCDKLTTIIESSLNVL--EPAEY 371
Query: 128 SAYTIAFGIRNVTRIDKIDIPNPRLRFL---------EANAEELP----IESD----SYS 170
+ IP L + +L +E + S
Sbjct: 372 RKMFDRLSVFP----PSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTIS 427
Query: 171 AYTIAFGIR----NVTRIDKALSEAYRVLKPGGRFLCLEFSHEEFKSMIESAGFQYVTY 225
+I ++ N + +++ + Y + K + S + ++ + ++ +
Sbjct: 428 IPSIYLELKVKLENEYALHRSIVDHYNIPK------TFD-SDDLIPPYLDQYFYSHIGH 479
Score = 34.1 bits (77), Expect = 0.038
Identities = 16/94 (17%), Positives = 36/94 (38%), Gaps = 19/94 (20%)
Query: 60 LLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQFPNQIDIPNPRLRFLEANAEE 119
L + L + + Q + +++ Y++L+ I+ Q P+ R +
Sbjct: 67 LFWTLLSKQEEMVQKF--VEEVLR---INYKFLMSPIKTEQRQ---PSMMTRMYIEQRDR 118
Query: 120 LPIESDSYSAYTIAFGIRNVTRIDKIDIPNPRLR 153
L ++ ++ Y NV+R+ +LR
Sbjct: 119 LYNDNQVFAKY-------NVSRLQPYL----KLR 141
Score = 33.7 bits (76), Expect = 0.064
Identities = 32/199 (16%), Positives = 66/199 (33%), Gaps = 66/199 (33%)
Query: 31 WKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQ 90
WK + D+L T +++ + L L + ++ K +
Sbjct: 347 WKHVNCDKL-----TTIIESS-----LNVL-------EPAEYR-------------KMFD 376
Query: 91 YLVESIRQFPNQIDIPNPRLRFL-----EANAEELPIESDSYSA-------YTIAFGIRN 138
L S+ FP IP L + +++ + + YS TI I +
Sbjct: 377 RL--SV--FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTI--SIPS 430
Query: 139 VTRIDKIDIPN-PRL--RFLEA--------NAEELPIESDSYSAYTIAFGIRNVTRIDKA 187
+ K+ + N L ++ + + +P D Y I ++N+ ++
Sbjct: 431 IYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERM 490
Query: 188 LSEAYRVLKPGGRFLCLEF 206
+R++ FL F
Sbjct: 491 --TLFRMV-----FLDFRF 502
Score = 31.4 bits (70), Expect = 0.30
Identities = 41/290 (14%), Positives = 82/290 (28%), Gaps = 91/290 (31%)
Query: 11 NVAKSYDTMNDAMSFGIHRLWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRA-YDQ 69
+V SY M F I W ++ L + + + + L LL+ + +
Sbjct: 169 DVCLSYKVQ-CKMDFKIF--W----LN-LKNCNSPETV-----LEMLQKLLYQIDPNWTS 215
Query: 70 YSFQVIPVMGQLIAGQ--------WKPYQ--YLV-------ESIRQFPNQ---------- 102
S + ++ + Q KPY+ LV ++ F
Sbjct: 216 RSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFK 275
Query: 103 --IDIPNPR-----------------------LRFLEANAEELPIESDSYSAYTIA-FG- 135
D + L++L+ ++LP E + + ++
Sbjct: 276 QVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAE 335
Query: 136 -IRN-VTRIDKIDIPN-PRL-RFLEANAEELPIESDSYSAYTIAFGI-RNVTRI-DKALS 189
IR+ + D N +L +E++ L E Y + I LS
Sbjct: 336 SIRDGLATWDNWKHVNCDKLTTIIESSLNVL--EPAEYRKMFDRLSVFPPSAHIPTILLS 393
Query: 190 EAYRVLKPGGRFLCLEFSHEEF--KSMIESAGFQYVTYENLTFGVVAIHS 237
++ + + S++E + I S
Sbjct: 394 ----LIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTIS---------IPS 430
Score = 30.6 bits (68), Expect = 0.48
Identities = 22/111 (19%), Positives = 41/111 (36%), Gaps = 27/111 (24%)
Query: 30 LWKDIFID------RLGPTHDTKLLDVAGGTDPLANLLFVLRAYDQYSFQVIPVMGQLIA 83
L++ +F+D ++ HD+ + +G + N L L+ Y Y P
Sbjct: 492 LFRMVFLDFRFLEQKI--RHDSTAWNASGS---ILNTLQQLKFYKPYICDNDPK------ 540
Query: 84 GQWKPYQYLVESIRQF---PNQIDIPNPRLRFLEA--NAEELPIESDSYSA 129
Y+ LV +I F + I + L AE+ I +++
Sbjct: 541 -----YERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQ 586
>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; HET: SAM;
1.60A {Rhodopseudomonas palustris}
Length = 211
Score = 34.8 bits (80), Expect = 0.011
Identities = 18/91 (19%), Positives = 26/91 (28%), Gaps = 20/91 (21%)
Query: 149 NPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRID--KALSEAYRVLKPGGRFLC--- 203
+L D+Y A + +V R + L +R LKPGG F
Sbjct: 84 RLGRPVRTMLFHQLD-AIDAYDAVWAHACLLHVPRDELADVLKLIWRALKPGGLFYASYK 142
Query: 204 --------------LEFSHEEFKSMIESAGF 220
S E ++ AG
Sbjct: 143 SGEGEGRDKLARYYNYPSEEWLRARYAEAGT 173
>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint
center for structural genomics, JCSG; HET: SAH; 2.11A
{Anabaena variabilis atcc 29413}
Length = 245
Score = 34.3 bits (78), Expect = 0.025
Identities = 9/63 (14%), Positives = 15/63 (23%), Gaps = 3/63 (4%)
Query: 151 RLRFLEANAEELPIESDSYSAYTIAFGI---RNVTRIDKALSEAYRVLKPGGRFLCLEFS 207
RL + I S+ A V + + +L G +E
Sbjct: 106 RLLDGLVPEQAAQIHSEIGDANIYMRTGFHHIPVEKRELLGQSLRILLGKQGAMYLIELG 165
Query: 208 HEE 210
Sbjct: 166 TGC 168
>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance,
transferase; HET: SAH; 1.48A {Escherichia coli} PDB:
2xva_A* 4dq0_A* 2i6g_A*
Length = 199
Score = 33.6 bits (77), Expect = 0.032
Identities = 11/63 (17%), Positives = 17/63 (26%), Gaps = 3/63 (4%)
Query: 150 PRLRFLEANAEELPIESDSYSAY--TIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFS 207
L + L + Y T+ I ++ R KPGG L +
Sbjct: 80 DNLHTRVVDLNNLTFD-RQYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAM 138
Query: 208 HEE 210
Sbjct: 139 DTA 141
>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic
resistance, aminoglycoside, S-adenosyl-L-methionine;
HET: SAH; 1.69A {Streptomyces SP}
Length = 218
Score = 33.1 bits (75), Expect = 0.044
Identities = 21/102 (20%), Positives = 37/102 (36%), Gaps = 14/102 (13%)
Query: 111 RFLEANAEELP----IESDSYSAYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIES 166
+ A + P + D+ + + + K +PN L +L A AE LP S
Sbjct: 40 KHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLPN--LLYLWATAERLPPLS 97
Query: 167 DSYSAY------TIAFGIRNVTRIDKALSEAYRVLKPGGRFL 202
+ ++ G+ + + L V +PG FL
Sbjct: 98 GVGELHVLMPWGSLLRGVLGSSP--EMLRGMAAVCRPGASFL 137
>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}
Length = 354
Score = 33.6 bits (77), Expect = 0.049
Identities = 20/81 (24%), Positives = 26/81 (32%), Gaps = 11/81 (13%)
Query: 150 PRLRFLEANAEELPIESDSYSAYTIA---FGIRNVTRID------KALSEAYRVLKPGGR 200
+RFL A+A LP +A G+R + L A +L PGGR
Sbjct: 254 SWIRFLRADARHLPRFFPEVDRI-LANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGR 312
Query: 201 FLCLEFSHEEFKSMIESAGFQ 221
L GF
Sbjct: 313 VALL-TLRPALLKRALPPGFA 332
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent
methyltransfer structural genomics, PSI-2; HET: MSE;
1.90A {Burkholderia thailandensis}
Length = 352
Score = 32.4 bits (74), Expect = 0.11
Identities = 16/106 (15%), Positives = 26/106 (24%), Gaps = 38/106 (35%)
Query: 151 RLRFLEANA-EELPIESDSYSAYTIA-----FGIRNVTRIDKALSEAYRVLKPGGRFLCL 204
R+ F E N + E + + F R + + A ++KPGG L L
Sbjct: 230 RVEFFEKNLLDARNFEGGAADVVMLNDCLHYFDAREAREV---IGHAAGLVKPGGALLIL 286
Query: 205 EF-----------------------------SHEEFKSMIESAGFQ 221
++ AG
Sbjct: 287 TMTMNDDRVTPALSADFSLHMMVNTNHGELHPTPWIAGVVRDAGLA 332
Score = 28.5 bits (64), Expect = 1.7
Identities = 13/65 (20%), Positives = 25/65 (38%), Gaps = 3/65 (4%)
Query: 3 LPMYEVFENVAKSYDTMNDAMSFGIHRLWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLF 62
F + ++ D NDAM + + D+ + ++D+AGG +
Sbjct: 140 FQQESRFAHDTRARDAFNDAMV-RLSQPMVDVVSELGVFARARTVIDLAGGHGTYLAQV- 197
Query: 63 VLRAY 67
LR +
Sbjct: 198 -LRRH 201
>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase
binding, liver cytosol, transferase-transferase
inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus}
PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A*
2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A
1r74_A* 2azt_A*
Length = 293
Score = 31.5 bits (71), Expect = 0.20
Identities = 5/19 (26%), Positives = 9/19 (47%)
Query: 184 IDKALSEAYRVLKPGGRFL 202
AL +++PGG +
Sbjct: 154 HRLALKNIASMVRPGGLLV 172
>3cc8_A Putative methyltransferase; structural genomics, joint center for
structural genomics, JCSG, protein structure initiative,
PS transferase; 1.64A {Bacillus cereus}
Length = 230
Score = 30.9 bits (70), Expect = 0.29
Identities = 5/54 (9%), Positives = 17/54 (31%)
Query: 150 PRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLC 203
+ + ++P E + + + ++ + + +K G L
Sbjct: 75 DHVVLGDIETMDMPYEEEQFDCVIFGDVLEHLFDPWAVIEKVKPYIKQNGVILA 128
>2r3s_A Uncharacterized protein; methyltransferase domain, structural
genomics, joint center structural genomics, JCSG,
protein structure initiative; HET: MSE; 2.15A {Nostoc
punctiforme}
Length = 335
Score = 30.8 bits (70), Expect = 0.31
Identities = 12/82 (14%), Positives = 24/82 (29%), Gaps = 29/82 (35%)
Query: 188 LSEAYRVLKPGGRFLCLEF-----------------------------SHEEFKSMIESA 218
L + L G+ + +F + E++SM +A
Sbjct: 254 LRKIKTALAVEGKVIVFDFIPNSDRITPPDAAAFSLVMLATTPNGDAYTFAEYESMFSNA 313
Query: 219 GFQYVTYENLTFGVVAIHSGFK 240
GF + +L + +K
Sbjct: 314 GFSHSQLHSLPTTQQQVIVAYK 335
>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.90A {Escherichia coli} SCOP:
c.66.1.21
Length = 256
Score = 30.9 bits (70), Expect = 0.33
Identities = 11/53 (20%), Positives = 17/53 (32%), Gaps = 3/53 (5%)
Query: 151 RLRFLEANAEELPIESDSYSAYTIAFG-IRNVTRIDKALSEAYRVLKPGGRFL 202
R+ F+ +A ++ G A + LKPGG L
Sbjct: 87 RVHFIHNDAAGYV-ANEKCDV-AACVGATWIAGGFAGAEELLAQSLKPGGIML 137
>3lcc_A Putative methyl chloride transferase; halide methyltransferase;
HET: SAH; 1.80A {Arabidopsis thaliana}
Length = 235
Score = 30.8 bits (69), Expect = 0.34
Identities = 11/55 (20%), Positives = 19/55 (34%), Gaps = 13/55 (23%)
Query: 185 DKALSEAYRVLKPGGRFLCLEF-------------SHEEFKSMIESAGFQYVTYE 226
Y +LKP G + L + F+ ++ GF+ V+ E
Sbjct: 151 PAWAKSMYELLKPDGELITLMYPITDHVGGPPYKVDVSTFEEVLVPIGFKAVSVE 205
>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative,
structural genomics, methyltransferase fold, PSI; 1.60A
{Bacillus subtilis} SCOP: c.66.1.20
Length = 240
Score = 30.4 bits (69), Expect = 0.41
Identities = 21/103 (20%), Positives = 35/103 (33%), Gaps = 11/103 (10%)
Query: 132 IAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEA 191
I F + + + + + N F AE D +Y I R V R+
Sbjct: 107 ITF-LEKL--SEALQLEN--TTFCHDRAETFGQRKDVRESYDIVT-ARAVARLSVLSELC 160
Query: 192 YRVLKPGGRFLCL--EFSHEE---FKSMIESAGFQYVTYENLT 229
++K G F+ L + EE K I + G + +
Sbjct: 161 LPLVKKNGLFVALKAASAEEELNAGKKAITTLGGELENIHSFK 203
>2zig_A TTHA0409, putative modification methylase; methyltransferase, S-
adenosylmethionine, structural genomics, NPPSFA; 2.10A
{Thermus thermophilus} PDB: 2zie_A* 2zif_A
Length = 297
Score = 30.4 bits (69), Expect = 0.47
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 188 LSEAYRVLKPGGRF 201
E +R+L PGGR
Sbjct: 80 WREVFRLLVPGGRL 93
>3lti_A DNA-directed RNA polymerase subunit beta; BBM2,
nucleotidyltransferase, transcription, transferase; HET:
MLY MSE; 1.60A {Escherichia coli} PDB: 3e7h_A
Length = 296
Score = 30.2 bits (69), Expect = 0.48
Identities = 16/109 (14%), Positives = 39/109 (35%), Gaps = 22/109 (20%)
Query: 107 NPRL--RFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKI-----DIPNPRLRFL-EAN 158
R + + + + + + + + +A + + + I ++ L L ++
Sbjct: 123 TARHIRQLEKDDVKLIEVPVEYIAGXVVAXDYIDESTGELICAANMELSLDLLAXLSQSG 182
Query: 159 AEELP---IESDSYSAYTIAFGIRNVTRIDK------ALSEAYRVLKPG 198
+ + + Y I R+D AL E YR+++PG
Sbjct: 183 HKRIETLFTNDLDHGPY-----ISETLRVDPTNDRLSALVEIYRMMRPG 226
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.4 bits (68), Expect = 0.68
Identities = 45/272 (16%), Positives = 81/272 (29%), Gaps = 97/272 (35%)
Query: 1 MKLPMYEVFENVAKS-YDTMN----DAMSFGIHRLWKDIFIDRLGPTHDTKLLDVAGGTD 55
M + +Y+ + A+ ++ + D F I + I P + T G
Sbjct: 1631 MGMDLYKTSK-AAQDVWNRADNHFKDTYGFSI------LDIVINNPVNLTIHFGGEKGKR 1683
Query: 56 PLANLLFVLRAYDQYSFQVIPVMGQLIAGQWKPYQYLVESIRQ--FPNQIDIPN------ 107
N Y F+ I G+L K ++ + E F ++ + +
Sbjct: 1684 IREN-------YSAMIFETIV-DGKLKTE--KIFKEINEHSTSYTFRSEKGLLSATQFTQ 1733
Query: 108 PRL--------RFLEANAEELPIESDSYSA------YTIAFGIRNVTRIDKIDIPNPRLR 153
P L L+ + I +D+ A Y A
Sbjct: 1734 PALTLMEKAAFEDLK---SKGLIPADATFAGHSLGEYA-A-------------------- 1769
Query: 154 FLEANAEELPIESDSYSAYTIAF--G--IRNVTRIDKALSEAYRV--LKPGGRFLCLEFS 207
L + A+ + IES + F G ++ D+ Y + + PG + FS
Sbjct: 1770 -LASLADVMSIES----LVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGR--VAASFS 1822
Query: 208 HEEFKSMIE----------------SAGFQYV 223
E + ++E QYV
Sbjct: 1823 QEALQYVVERVGKRTGWLVEIVNYNVENQQYV 1854
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein
structure initiative, NEW YORK structural genomix
research; 2.33A {Bacteroides vulgatus}
Length = 363
Score = 29.7 bits (67), Expect = 0.76
Identities = 12/63 (19%), Positives = 24/63 (38%), Gaps = 6/63 (9%)
Query: 5 MYEVFENVAKSYDTMNDAMSFGIHRLWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVL 64
+ ++ E V KS+ + S ++ + H +LLD+ G T A +
Sbjct: 145 LSQLPEQVQKSWFGFDHFYS----DQSFGKALEIVFSHHPKRLLDIGGNTGKWATQC--V 198
Query: 65 RAY 67
+
Sbjct: 199 QYN 201
Score = 28.5 bits (64), Expect = 1.8
Identities = 6/74 (8%), Positives = 16/74 (21%), Gaps = 32/74 (43%)
Query: 183 RIDKALSEAYRVLKPGGRFLCLEF--------------------------------SHEE 210
+ L+ + + + +E ++
Sbjct: 265 EVISILTRVAQSIGKDSKVYIMETLWDRQRYETASYCLTQISLYFTAMANGNSKMFHSDD 324
Query: 211 FKSMIESAGFQYVT 224
IE+AG +
Sbjct: 325 LIRCIENAGLEVEE 338
>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein
structure initiative; 2.46A {Archaeoglobus fulgidus}
Length = 240
Score = 29.5 bits (66), Expect = 0.78
Identities = 11/62 (17%), Positives = 18/62 (29%), Gaps = 21/62 (33%)
Query: 183 RIDKALSEAYRVLKPGGRFLC---------------------LEFSHEEFKSMIESAGFQ 221
R+ + LS Y +K + E K ++E GF+
Sbjct: 118 RLFELLSLCYSKMKYSSYIVIESPNPTSLYSLINFYIDPTHKKPVHPETLKFILEYLGFR 177
Query: 222 YV 223
V
Sbjct: 178 DV 179
>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics,
midwest cente structural genomics, protein structure
initiative; 1.95A {Streptococcus thermophilus} PDB:
3lby_A*
Length = 185
Score = 29.5 bits (66), Expect = 0.79
Identities = 6/26 (23%), Positives = 13/26 (50%), Gaps = 1/26 (3%)
Query: 186 KALSEAYRVLKPGGRFLCLEFS-HEE 210
+A+ + L+ GGR + + H+
Sbjct: 116 EAIEKILDRLEVGGRLAIMIYYGHDG 141
>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA
methyltransferase RSRI, D binding, DNA modification, DNA
methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides}
SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A
Length = 319
Score = 29.4 bits (66), Expect = 0.90
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 188 LSEAYRVLKPGGRF 201
L+EA RVL P G
Sbjct: 89 LAEAERVLSPTGSI 102
>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine,
nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A
{Methanothermobacter thermautotrophicusorganism_taxid}
PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*
Length = 298
Score = 29.4 bits (65), Expect = 0.99
Identities = 2/53 (3%), Positives = 12/53 (22%), Gaps = 5/53 (9%)
Query: 151 RLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLC 203
+ + + + + + + +R + R +
Sbjct: 173 GVNVITGDETVIDGLE-----FDVLMVAALAEPKRRVFRNIHRYVDTETRIIY 220
>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA
methylation, S- adenosylmethionine, PSI, protein
structure initiative; HET: SAM; 1.74A {Moraxella bovis}
SCOP: c.66.1.11
Length = 260
Score = 29.2 bits (66), Expect = 1.1
Identities = 5/37 (13%), Positives = 10/37 (27%), Gaps = 2/37 (5%)
Query: 188 LSEAYRVLKPGGRF--LCLEFSHEEFKSMIESAGFQY 222
+ + L G F+ + S G +
Sbjct: 57 IDKVLDKLDKDGSLYIFNTPFNCAFICQYLVSKGMIF 93
>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II
DNA-(cytosine N4) methyltransferase, amino methylation,
selenomethionine; HET: SAH; 2.80A {Proteus vulgaris}
SCOP: c.66.1.11
Length = 323
Score = 29.0 bits (65), Expect = 1.4
Identities = 5/16 (31%), Positives = 7/16 (43%)
Query: 188 LSEAYRVLKPGGRFLC 203
+ LKP G F+
Sbjct: 67 AKVVNKKLKPDGSFVV 82
>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA
methyltransferase, translation, cytoplasm, rRNA
processing; HET: HIC SAM AMP; 1.50A {Thermus
thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*
Length = 249
Score = 28.6 bits (64), Expect = 1.8
Identities = 22/103 (21%), Positives = 34/103 (33%), Gaps = 11/103 (10%)
Query: 132 IAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEA 191
+AF + I+ + + R L AE L E+ AY A R V +
Sbjct: 117 VAF-VERA--IEVLGLKG--ARALWGRAEVLAREAGHREAYARAVA-RAVAPLCVLSELL 170
Query: 192 YRVLKPGGRFLCL--EFSHEE---FKSMIESAGFQYVTYENLT 229
L+ GG + + EE +E G + L
Sbjct: 171 LPFLEVGGAAVAMKGPRVEEELAPLPPALERLGGRLGEVLALQ 213
>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo
sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A*
2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A*
3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A*
3kqm_A* 3kqo_A* 3kqp_A* ...
Length = 289
Score = 28.6 bits (63), Expect = 1.8
Identities = 20/112 (17%), Positives = 37/112 (33%), Gaps = 20/112 (17%)
Query: 137 RNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLK 196
V R+ ID+ P+ L A + SA+ + ++ +AL +L+
Sbjct: 149 ARVKRVLPIDVHQPQP--LGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLR 206
Query: 197 PGG------------------RFLCLEFSHEEFKSMIESAGFQYVTYENLTF 230
PGG R + S EE + + +G++
Sbjct: 207 PGGHLLLIGALEESWYLAGEARLTVVPVSEEEVREALVRSGYKVRDLRTYIM 258
>3nwo_A PIP, proline iminopeptidase; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, mycobac smegmatis; 1.90A {Mycobacterium
smegmatis}
Length = 330
Score = 28.5 bits (64), Expect = 2.1
Identities = 13/54 (24%), Positives = 20/54 (37%), Gaps = 1/54 (1%)
Query: 23 MSFGIHRLWKDIFIDRLGPTHDTKLLDVAGGTDPLANLLFVLRAY-DQYSFQVI 75
+ FG H W + H L+ + GG N + + A D+ VI
Sbjct: 33 VPFGDHETWVQVTTPENAQPHALPLIVLHGGPGMAHNYVANIAALADETGRTVI 86
>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4;
2.25A {Escherichia coli}
Length = 347
Score = 28.3 bits (64), Expect = 2.2
Identities = 9/17 (52%), Positives = 12/17 (70%)
Query: 184 IDKALSEAYRVLKPGGR 200
I++AL + VL PGGR
Sbjct: 253 IEQALKSSLNVLAPGGR 269
>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein
structure initiative, midwest center for structural
genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} SCOP:
c.66.1.47 PDB: 3k6r_A 3a25_A* 3a26_A*
Length = 278
Score = 28.0 bits (62), Expect = 2.4
Identities = 10/93 (10%), Positives = 24/93 (25%), Gaps = 11/93 (11%)
Query: 129 AYTIAFGIRNVTRIDKIDIPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRID--- 185
++ + ++ I+ +FL N +E + D
Sbjct: 138 HLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRIL 197
Query: 186 --------KALSEAYRVLKPGGRFLCLEFSHEE 210
+ + +A + K G E+
Sbjct: 198 MGYVVRTHEFIPKALSIAKDGAIIHYHNTVPEK 230
>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase;
S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A
{Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23
Length = 285
Score = 28.2 bits (64), Expect = 2.6
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 184 IDKALSEAYRVLKPGGR 200
+ + L +A VL PGGR
Sbjct: 212 LKEFLEQAAEVLAPGGR 228
>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP,
structural genomics, PSI, protein structure initiative;
2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB:
1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*
Length = 298
Score = 27.8 bits (61), Expect = 3.4
Identities = 12/82 (14%), Positives = 26/82 (31%), Gaps = 5/82 (6%)
Query: 149 NPRLRFLEANAEELPIESDS-----YSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLC 203
++ F ++ ++ S ++ + +D A R L+PGG F+
Sbjct: 113 RFKVFFRAQDSYGRHMDLGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIM 172
Query: 204 LEFSHEEFKSMIESAGFQYVTY 225
S + + Y
Sbjct: 173 TVPSRDVILERYKQGRMSNDFY 194
>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural
genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus}
PDB: 2iip_A* 3rod_A*
Length = 265
Score = 27.7 bits (61), Expect = 3.4
Identities = 14/59 (23%), Positives = 20/59 (33%), Gaps = 18/59 (30%)
Query: 186 KALSEAYRVLKPGG------------------RFLCLEFSHEEFKSMIESAGFQYVTYE 226
AL +LKPGG +F L E + +E AG+ +E
Sbjct: 179 TALRNLGSLLKPGGFLVMVDALKSSYYMIGEQKFSSLPLGWETVRDAVEEAGYTIEQFE 237
>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase
fold, protein-cofactor product complex, structural
genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima}
SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*
Length = 301
Score = 27.1 bits (61), Expect = 4.9
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 184 IDKALSEAYRVLKPGGRF 201
+ + L +A +L PGGR
Sbjct: 224 LKEFLKKAEDLLNPGGRI 241
>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural
genomics, protein structure initiative, pyrococc
furiosus, PSI-2; 2.20A {Pyrococcus furiosus}
Length = 230
Score = 26.7 bits (60), Expect = 5.8
Identities = 11/37 (29%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 188 LSEAYRVLKPGGRFLCLEFSH-EEFKSMIESAGFQYV 223
L EA+ L PGG+ + L E+ ++I+ G +
Sbjct: 162 LEEAFDHLNPGGK-VALYLPDKEKLLNVIKERGIKLG 197
>4f4f_A Threonine synthase; structural genomics, niaid, national institute
of allergy AN infectious diseases; HET: PLP; 1.90A
{Brucella melitensis BV}
Length = 468
Score = 26.9 bits (60), Expect = 7.8
Identities = 9/28 (32%), Positives = 12/28 (42%), Gaps = 3/28 (10%)
Query: 191 AYRVLKPGGRFLCLEFSHEEFKSMIESA 218
A VL P F E +F+ M+ A
Sbjct: 60 ALAVLTP---FTGGEIPAADFERMVREA 84
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.140 0.413
Gapped
Lambda K H
0.267 0.0528 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,854,635
Number of extensions: 236160
Number of successful extensions: 784
Number of sequences better than 10.0: 1
Number of HSP's gapped: 738
Number of HSP's successfully gapped: 168
Length of query: 241
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 150
Effective length of database: 4,160,982
Effective search space: 624147300
Effective search space used: 624147300
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (25.8 bits)