BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14202
(356 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 94.4 bits (233), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 57/163 (34%), Positives = 83/163 (50%), Gaps = 15/163 (9%)
Query: 133 LCLFAHEGNSEMIALLLEFHACIDLANSQGRTPLSLAAGRGHMEAVRTLVAAGASLGRTD 192
L A GN + + L+E A ++ ++S GRTPL AA GH E V+ L++ GA + D
Sbjct: 8 LIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKD 67
Query: 193 TTGRCALVHAARGGHLQNLSPLMLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQ 252
+ GR +PL A KEGH + L+ A ++ D +TPL AA+
Sbjct: 68 SDGR---------------TPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAK 112
Query: 253 EGHVGLLELLLDKGADILREDGEGLTALSWACMRGRIQAVTYL 295
EGH +++LL+ KGAD+ D +G T L A G + V L
Sbjct: 113 EGHKEIVKLLISKGADVNTSDSDGRTPLDLAREHGNEEIVKLL 155
Score = 83.6 bits (205), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 84/167 (50%), Gaps = 17/167 (10%)
Query: 169 AAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPLMLAVKEGHWATAEK 228
AA G+ + V+ L+ GA + +D+ GR +PL A KEGH +
Sbjct: 11 AAENGNKDRVKDLIENGADVNASDSDGR---------------TPLHYAAKEGHKEIVKL 55
Query: 229 LLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILREDGEGLTALSWACMRGR 288
L+ A ++ D +TPL AA+EGH +++LL+ KGAD+ +D +G T L +A G
Sbjct: 56 LISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGH 115
Query: 289 IQAVTYLLDRDRGAMIEHVDINGLRPLDRAISCRNVPVVQCFLRKGA 335
+ V L+ +GA + D +G PLD A N +V+ ++G
Sbjct: 116 KEIVKLLI--SKGADVNTSDSDGRTPLDLAREHGNEEIVKLLEKQGG 160
Score = 78.2 bits (191), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 51/155 (32%), Positives = 81/155 (52%), Gaps = 17/155 (10%)
Query: 113 LLLSGADANHITEFLGAAPALCLFAHEGNSEMIALLLEFHACIDLANSQGRTPLSLAAGR 172
L+ +GAD N ++ G P L A EG+ E++ LL+ A ++ +S GRTPL AA
Sbjct: 23 LIENGADVN-ASDSDGRTP-LHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKE 80
Query: 173 GHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPLMLAVKEGHWATAEKLLQH 232
GH E V+ L++ GA + D+ GR +PL A KEGH + L+
Sbjct: 81 GHKEIVKLLISKGADVNAKDSDGR---------------TPLHYAAKEGHKEIVKLLISK 125
Query: 233 HAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGA 267
A ++ +D +TPL +A + G+ +++LL +G
Sbjct: 126 GADVNTSDSDGRTPLDLAREHGNEEIVKLLEKQGG 160
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 70/127 (55%), Gaps = 2/127 (1%)
Query: 214 LMLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILRED 273
L+ A + G+ + L+++ A ++ +D +TPL AA+EGH +++LL+ KGAD+ +D
Sbjct: 8 LIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKD 67
Query: 274 GEGLTALSWACMRGRIQAVTYLLDRDRGAMIEHVDINGLRPLDRAISCRNVPVVQCFLRK 333
+G T L +A G + V L+ +GA + D +G PL A + +V+ + K
Sbjct: 68 SDGRTPLHYAAKEGHKEIVKLLI--SKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISK 125
Query: 334 GAKLGPT 340
GA + +
Sbjct: 126 GADVNTS 132
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 88.2 bits (217), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 56/163 (34%), Positives = 83/163 (50%), Gaps = 15/163 (9%)
Query: 133 LCLFAHEGNSEMIALLLEFHACIDLANSQGRTPLSLAAGRGHMEAVRTLVAAGASLGRTD 192
L A GN + + L+E A ++ ++S GRTPL AA GH E V+ L++ GA + D
Sbjct: 8 LIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKD 67
Query: 193 TTGRCALVHAARGGHLQNLSPLMLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQ 252
+ GR L HAA GH + + L + +G A ++ D +TPL AA+
Sbjct: 68 SDGRTPLHHAAENGHKE---VVKLLISKG------------ADVNAKDSDGRTPLHHAAE 112
Query: 253 EGHVGLLELLLDKGADILREDGEGLTALSWACMRGRIQAVTYL 295
GH +++LL+ KGAD+ D +G T L A G + V L
Sbjct: 113 NGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLL 155
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 83/167 (49%), Gaps = 17/167 (10%)
Query: 169 AAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPLMLAVKEGHWATAEK 228
AA G+ + V+ L+ GA + +D+ GR L HAA GH + + L + +G
Sbjct: 11 AAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKE---VVKLLISKG------- 60
Query: 229 LLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILREDGEGLTALSWACMRGR 288
A ++ D +TPL AA+ GH +++LL+ KGAD+ +D +G T L A G
Sbjct: 61 -----ADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGH 115
Query: 289 IQAVTYLLDRDRGAMIEHVDINGLRPLDRAISCRNVPVVQCFLRKGA 335
+ V L+ +GA + D +G PLD A N VV+ ++G
Sbjct: 116 KEVVKLLI--SKGADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQGG 160
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 81/155 (52%), Gaps = 17/155 (10%)
Query: 113 LLLSGADANHITEFLGAAPALCLFAHEGNSEMIALLLEFHACIDLANSQGRTPLSLAAGR 172
L+ +GAD N ++ G P L A G+ E++ LL+ A ++ +S GRTPL AA
Sbjct: 23 LIENGADVN-ASDSDGRTP-LHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAEN 80
Query: 173 GHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPLMLAVKEGHWATAEKLLQH 232
GH E V+ L++ GA + D+ GR L HAA GH + + L + +G
Sbjct: 81 GHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKE---VVKLLISKG----------- 126
Query: 233 HAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGA 267
A ++ +D +TPL +A + G+ +++LL +G
Sbjct: 127 -ADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQGG 160
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 68/127 (53%), Gaps = 2/127 (1%)
Query: 214 LMLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILRED 273
L+ A + G+ + L+++ A ++ +D +TPL AA+ GH +++LL+ KGAD+ +D
Sbjct: 8 LIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKD 67
Query: 274 GEGLTALSWACMRGRIQAVTYLLDRDRGAMIEHVDINGLRPLDRAISCRNVPVVQCFLRK 333
+G T L A G + V L+ +GA + D +G PL A + VV+ + K
Sbjct: 68 SDGRTPLHHAAENGHKEVVKLLI--SKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISK 125
Query: 334 GAKLGPT 340
GA + +
Sbjct: 126 GADVNTS 132
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 57/163 (34%), Positives = 81/163 (49%), Gaps = 15/163 (9%)
Query: 133 LCLFAHEGNSEMIALLLEFHACIDLANSQGRTPLSLAAGRGHMEAVRTLVAAGASLGRTD 192
L A GN + + LLE A ++ ++S G+TPL LAA GH E V+ L++ GA D
Sbjct: 8 LIEAAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKD 67
Query: 193 TTGRCALVHAARGGHLQNLSPLMLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQ 252
+ G+ +PL LA + GH + LL A + D KTPL +AA+
Sbjct: 68 SDGK---------------TPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAE 112
Query: 253 EGHVGLLELLLDKGADILREDGEGLTALSWACMRGRIQAVTYL 295
GH +++LLL +GAD D +G T L A G + V L
Sbjct: 113 NGHKEVVKLLLSQGADPNTSDSDGRTPLDLAREHGNEEVVKLL 155
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 80/167 (47%), Gaps = 17/167 (10%)
Query: 169 AAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPLMLAVKEGHWATAEK 228
AA G+ + V+ L+ GA + +D+ G+ +PL LA + GH +
Sbjct: 11 AAENGNKDRVKDLLENGADVNASDSDGK---------------TPLHLAAENGHKEVVKL 55
Query: 229 LLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILREDGEGLTALSWACMRGR 288
LL A + D KTPL +AA+ GH +++LLL +GAD +D +G T L A G
Sbjct: 56 LLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGH 115
Query: 289 IQAVTYLLDRDRGAMIEHVDINGLRPLDRAISCRNVPVVQCFLRKGA 335
+ V LL +GA D +G PLD A N VV+ ++G
Sbjct: 116 KEVVKLLL--SQGADPNTSDSDGRTPLDLAREHGNEEVVKLLEKQGG 160
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/155 (33%), Positives = 79/155 (50%), Gaps = 17/155 (10%)
Query: 113 LLLSGADANHITEFLGAAPALCLFAHEGNSEMIALLLEFHACIDLANSQGRTPLSLAAGR 172
LL +GAD N ++ G P L L A G+ E++ LLL A + +S G+TPL LAA
Sbjct: 23 LLENGADVN-ASDSDGKTP-LHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAEN 80
Query: 173 GHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPLMLAVKEGHWATAEKLLQH 232
GH E V+ L++ GA D+ G+ +PL LA + GH + LL
Sbjct: 81 GHKEVVKLLLSQGADPNAKDSDGK---------------TPLHLAAENGHKEVVKLLLSQ 125
Query: 233 HAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGA 267
A + +D +TPL +A + G+ +++LL +G
Sbjct: 126 GADPNTSDSDGRTPLDLAREHGNEEVVKLLEKQGG 160
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 65/122 (53%), Gaps = 2/122 (1%)
Query: 214 LMLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILRED 273
L+ A + G+ + LL++ A ++ +D KTPL +AA+ GH +++LLL +GAD +D
Sbjct: 8 LIEAAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKD 67
Query: 274 GEGLTALSWACMRGRIQAVTYLLDRDRGAMIEHVDINGLRPLDRAISCRNVPVVQCFLRK 333
+G T L A G + V LL +GA D +G PL A + VV+ L +
Sbjct: 68 SDGKTPLHLAAENGHKEVVKLLL--SQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQ 125
Query: 334 GA 335
GA
Sbjct: 126 GA 127
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 43/79 (54%), Gaps = 2/79 (2%)
Query: 108 KVSRLLLLSGADANHITEFLGAAPALCLFAHEGNSEMIALLLEFHACIDLANSQGRTPLS 167
+V +LLL GAD N + G P L L A G+ E++ LLL A + ++S GRTPL
Sbjct: 84 EVVKLLLSQGADPN-AKDSDGKTP-LHLAAENGHKEVVKLLLSQGADPNTSDSDGRTPLD 141
Query: 168 LAAGRGHMEAVRTLVAAGA 186
LA G+ E V+ L G
Sbjct: 142 LAREHGNEEVVKLLEKQGG 160
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/137 (37%), Positives = 75/137 (54%), Gaps = 15/137 (10%)
Query: 161 QGRTPLSLAAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPLMLAVKE 220
GRTPL LAA GH+E V+ L+ AGA + D GR +PL LA +
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGR---------------TPLHLAARN 45
Query: 221 GHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILREDGEGLTAL 280
GH + LL+ A ++ D + +TPL +AA+ GH+ +++LLL+ GAD+ +D G T L
Sbjct: 46 GHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPL 105
Query: 281 SWACMRGRIQAVTYLLD 297
A G ++ V LL+
Sbjct: 106 HLAARNGHLEVVKLLLE 122
Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/135 (37%), Positives = 76/135 (56%), Gaps = 15/135 (11%)
Query: 133 LCLFAHEGNSEMIALLLEFHACIDLANSQGRTPLSLAAGRGHMEAVRTLVAAGASLGRTD 192
L L A G+ E++ LLLE A ++ + GRTPL LAA GH+E V+ L+ AGA + D
Sbjct: 6 LHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKD 65
Query: 193 TTGRCALVHAARGGHLQNLSPLMLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQ 252
GR +PL LA + GH + LL+ A ++ D + +TPL +AA+
Sbjct: 66 KNGR---------------TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAAR 110
Query: 253 EGHVGLLELLLDKGA 267
GH+ +++LLL+ GA
Sbjct: 111 NGHLEVVKLLLEAGA 125
Score = 72.4 bits (176), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 45/124 (36%), Positives = 69/124 (55%), Gaps = 2/124 (1%)
Query: 212 SPLMLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILR 271
+PL LA + GH + LL+ A ++ D + +TPL +AA+ GH+ +++LLL+ GAD+
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA 63
Query: 272 EDGEGLTALSWACMRGRIQAVTYLLDRDRGAMIEHVDINGLRPLDRAISCRNVPVVQCFL 331
+D G T L A G ++ V LL + GA + D NG PL A ++ VV+ L
Sbjct: 64 KDKNGRTPLHLAARNGHLEVVKLLL--EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL 121
Query: 332 RKGA 335
GA
Sbjct: 122 EAGA 125
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/163 (34%), Positives = 77/163 (47%), Gaps = 15/163 (9%)
Query: 133 LCLFAHEGNSEMIALLLEFHACIDLANSQGRTPLSLAAGRGHMEAVRTLVAAGASLGRTD 192
L A GN + + LLE A + ++S GRTPL AA GH E V+ L++ GA D
Sbjct: 8 LIEAAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKD 67
Query: 193 TTGRCALVHAARGGHLQNLSPLMLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQ 252
+ GR +PL A + GH + LL A + D +TPL AA+
Sbjct: 68 SDGR---------------TPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAE 112
Query: 253 EGHVGLLELLLDKGADILREDGEGLTALSWACMRGRIQAVTYL 295
GH +++LLL KGAD D +G T L A G + V L
Sbjct: 113 NGHKEIVKLLLSKGADPNTSDSDGRTPLDLAREHGNEEIVKLL 155
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 78/167 (46%), Gaps = 17/167 (10%)
Query: 169 AAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPLMLAVKEGHWATAEK 228
AA G+ + V+ L+ GA +D+ GR +PL A + GH +
Sbjct: 11 AAENGNKDRVKDLLENGADPNASDSDGR---------------TPLHYAAENGHKEIVKL 55
Query: 229 LLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILREDGEGLTALSWACMRGR 288
LL A + D +TPL AA+ GH +++LLL KGAD +D +G T L +A G
Sbjct: 56 LLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGH 115
Query: 289 IQAVTYLLDRDRGAMIEHVDINGLRPLDRAISCRNVPVVQCFLRKGA 335
+ V LL +GA D +G PLD A N +V+ ++G
Sbjct: 116 KEIVKLLL--SKGADPNTSDSDGRTPLDLAREHGNEEIVKLLEKQGG 160
Score = 67.8 bits (164), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 51/155 (32%), Positives = 76/155 (49%), Gaps = 17/155 (10%)
Query: 113 LLLSGADANHITEFLGAAPALCLFAHEGNSEMIALLLEFHACIDLANSQGRTPLSLAAGR 172
LL +GAD N ++ G P L A G+ E++ LLL A + +S GRTPL AA
Sbjct: 23 LLENGADPN-ASDSDGRTP-LHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAEN 80
Query: 173 GHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPLMLAVKEGHWATAEKLLQH 232
GH E V+ L++ GA D+ GR +PL A + GH + LL
Sbjct: 81 GHKEIVKLLLSKGADPNAKDSDGR---------------TPLHYAAENGHKEIVKLLLSK 125
Query: 233 HAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGA 267
A + +D +TPL +A + G+ +++LL +G
Sbjct: 126 GADPNTSDSDGRTPLDLAREHGNEEIVKLLEKQGG 160
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 64/122 (52%), Gaps = 2/122 (1%)
Query: 214 LMLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILRED 273
L+ A + G+ + LL++ A + +D +TPL AA+ GH +++LLL KGAD +D
Sbjct: 8 LIEAAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKD 67
Query: 274 GEGLTALSWACMRGRIQAVTYLLDRDRGAMIEHVDINGLRPLDRAISCRNVPVVQCFLRK 333
+G T L +A G + V LL +GA D +G PL A + +V+ L K
Sbjct: 68 SDGRTPLHYAAENGHKEIVKLLL--SKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSK 125
Query: 334 GA 335
GA
Sbjct: 126 GA 127
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 82.4 bits (202), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 51/152 (33%), Positives = 77/152 (50%), Gaps = 15/152 (9%)
Query: 137 AHEGNSEMIALLLEFHACIDLANSQGRTPLSLAAGRGHMEAVRTLVAAGASLGRTDTTGR 196
A G + + +L+ A ++ ++ G TPL LAA GH+E V L+ GA + +D TG
Sbjct: 22 ARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASDLTG- 80
Query: 197 CALVHAARGGHLQNLSPLMLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHV 256
++PL LA GH E LL+H A ++ D TPL +AA+ GH+
Sbjct: 81 --------------ITPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHL 126
Query: 257 GLLELLLDKGADILREDGEGLTALSWACMRGR 288
++E+LL GAD+ +D G TA + G
Sbjct: 127 EIVEVLLKHGADVNAQDKFGKTAFDISIDNGN 158
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 76/152 (50%), Gaps = 17/152 (11%)
Query: 111 RLLLLSGADANHITEFLGAAPALCLFAHEGNSEMIALLLEFHACIDLANSQGRTPLSLAA 170
R+L+ +GAD N T+ G P L L A G+ E++ +LL+ A ++ ++ G TPL LAA
Sbjct: 31 RILMANGADVN-ATDNDGYTP-LHLAASNGHLEIVEVLLKNGADVNASDLTGITPLHLAA 88
Query: 171 GRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPLMLAVKEGHWATAEKLL 230
GH+E V L+ GA + D G +PL LA K GH E LL
Sbjct: 89 ATGHLEIVEVLLKHGADVNAYDNDGH---------------TPLHLAAKYGHLEIVEVLL 133
Query: 231 QHHAPLDQTDGSHKTPLMIAAQEGHVGLLELL 262
+H A ++ D KT I+ G+ L E+L
Sbjct: 134 KHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 75/162 (46%), Gaps = 17/162 (10%)
Query: 169 AAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPLMLAVKEGHWATAEK 228
AA G + VR L+A GA + TD G +PL LA GH E
Sbjct: 21 AARAGQDDEVRILMANGADVNATDNDG---------------YTPLHLAASNGHLEIVEV 65
Query: 229 LLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILREDGEGLTALSWACMRGR 288
LL++ A ++ +D + TPL +AA GH+ ++E+LL GAD+ D +G T L A G
Sbjct: 66 LLKNGADVNASDLTGITPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGH 125
Query: 289 IQAVTYLLDRDRGAMIEHVDINGLRPLDRAISCRNVPVVQCF 330
++ V LL GA + D G D +I N + +
Sbjct: 126 LEIVEVLL--KHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 68/138 (49%), Gaps = 8/138 (5%)
Query: 214 LMLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILRED 273
L+ A + G L+ + A ++ TD TPL +AA GH+ ++E+LL GAD+ D
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASD 77
Query: 274 GEGLTALSWACMRGRIQAVTYLLDRDRGAMIEHVDINGLRPLDRAISCRNVPVVQCFLRK 333
G+T L A G ++ V LL GA + D +G PL A ++ +V+ L+
Sbjct: 78 LTGITPLHLAAATGHLEIVEVLL--KHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKH 135
Query: 334 GA------KLGPTTWSMA 345
GA K G T + ++
Sbjct: 136 GADVNAQDKFGKTAFDIS 153
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 81.6 bits (200), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 52/151 (34%), Positives = 76/151 (50%), Gaps = 15/151 (9%)
Query: 137 AHEGNSEMIALLLEFHACIDLANSQGRTPLSLAAGRGHMEAVRTLVAAGASLGRTDTTGR 196
A G + + +L+ A ++ + G TPL LAA GH+E V L+ AGA + D G
Sbjct: 22 ARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDG- 80
Query: 197 CALVHAARGGHLQNLSPLMLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHV 256
+PL LA +EGH E LL+ A ++ D TPL +AA+EGH+
Sbjct: 81 --------------YTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHL 126
Query: 257 GLLELLLDKGADILREDGEGLTALSWACMRG 287
++E+LL GAD+ +D G TA + G
Sbjct: 127 EIVEVLLKAGADVNAQDKFGKTAFDISIDNG 157
Score = 72.0 bits (175), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 76/152 (50%), Gaps = 17/152 (11%)
Query: 111 RLLLLSGADANHITEFLGAAPALCLFAHEGNSEMIALLLEFHACIDLANSQGRTPLSLAA 170
R+L+ +GAD N + G P L L A EG+ E++ +LL+ A ++ + G TPL LAA
Sbjct: 31 RILMANGADVN-AKDKDGYTP-LHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAA 88
Query: 171 GRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPLMLAVKEGHWATAEKLL 230
GH+E V L+ AGA + D G +PL LA +EGH E LL
Sbjct: 89 REGHLEIVEVLLKAGADVNAKDKDG---------------YTPLHLAAREGHLEIVEVLL 133
Query: 231 QHHAPLDQTDGSHKTPLMIAAQEGHVGLLELL 262
+ A ++ D KT I+ G+ L E+L
Sbjct: 134 KAGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 71.2 bits (173), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 53/162 (32%), Positives = 76/162 (46%), Gaps = 17/162 (10%)
Query: 169 AAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPLMLAVKEGHWATAEK 228
AA G + VR L+A GA + D G +PL LA +EGH E
Sbjct: 21 AARAGQDDEVRILMANGADVNAKDKDG---------------YTPLHLAAREGHLEIVEV 65
Query: 229 LLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILREDGEGLTALSWACMRGR 288
LL+ A ++ D TPL +AA+EGH+ ++E+LL GAD+ +D +G T L A G
Sbjct: 66 LLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGH 125
Query: 289 IQAVTYLLDRDRGAMIEHVDINGLRPLDRAISCRNVPVVQCF 330
++ V LL GA + D G D +I N + +
Sbjct: 126 LEIVEVLL--KAGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 70/140 (50%), Gaps = 8/140 (5%)
Query: 212 SPLMLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILR 271
L+ A + G L+ + A ++ D TPL +AA+EGH+ ++E+LL GAD+
Sbjct: 16 KKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNA 75
Query: 272 EDGEGLTALSWACMRGRIQAVTYLLDRDRGAMIEHVDINGLRPLDRAISCRNVPVVQCFL 331
+D +G T L A G ++ V LL GA + D +G PL A ++ +V+ L
Sbjct: 76 KDKDGYTPLHLAAREGHLEIVEVLL--KAGADVNAKDKDGYTPLHLAAREGHLEIVEVLL 133
Query: 332 RKGA------KLGPTTWSMA 345
+ GA K G T + ++
Sbjct: 134 KAGADVNAQDKFGKTAFDIS 153
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 81.6 bits (200), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 52/151 (34%), Positives = 75/151 (49%), Gaps = 15/151 (9%)
Query: 137 AHEGNSEMIALLLEFHACIDLANSQGRTPLSLAAGRGHMEAVRTLVAAGASLGRTDTTGR 196
A G + + +L+ A ++ + G TPL LAA GH+E V L+ AGA + D G
Sbjct: 10 ARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDG- 68
Query: 197 CALVHAARGGHLQNLSPLMLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHV 256
+PL LA +EGH E LL+ A ++ D TPL +AA+EGH+
Sbjct: 69 --------------YTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHL 114
Query: 257 GLLELLLDKGADILREDGEGLTALSWACMRG 287
++E+LL GAD+ +D G T A G
Sbjct: 115 EIVEVLLKAGADVNAQDKFGKTPFDLAIREG 145
Score = 79.0 bits (193), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 55/152 (36%), Positives = 79/152 (51%), Gaps = 17/152 (11%)
Query: 111 RLLLLSGADANHITEFLGAAPALCLFAHEGNSEMIALLLEFHACIDLANSQGRTPLSLAA 170
R+L+ +GAD N + G P L L A EG+ E++ +LL+ A ++ + G TPL LAA
Sbjct: 19 RILMANGADVN-AKDKDGYTP-LHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAA 76
Query: 171 GRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPLMLAVKEGHWATAEKLL 230
GH+E V L+ AGA + D G +PL LA +EGH E LL
Sbjct: 77 REGHLEIVEVLLKAGADVNAKDKDG---------------YTPLHLAAREGHLEIVEVLL 121
Query: 231 QHHAPLDQTDGSHKTPLMIAAQEGHVGLLELL 262
+ A ++ D KTP +A +EGH + E+L
Sbjct: 122 KAGADVNAQDKFGKTPFDLAIREGHEDIAEVL 153
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 54/151 (35%), Positives = 74/151 (49%), Gaps = 17/151 (11%)
Query: 169 AAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPLMLAVKEGHWATAEK 228
AA G + VR L+A GA + D G +PL LA +EGH E
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDG---------------YTPLHLAAREGHLEIVEV 53
Query: 229 LLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILREDGEGLTALSWACMRGR 288
LL+ A ++ D TPL +AA+EGH+ ++E+LL GAD+ +D +G T L A G
Sbjct: 54 LLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGH 113
Query: 289 IQAVTYLLDRDRGAMIEHVDINGLRPLDRAI 319
++ V LL GA + D G P D AI
Sbjct: 114 LEIVEVLL--KAGADVNAQDKFGKTPFDLAI 142
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 70/138 (50%), Gaps = 8/138 (5%)
Query: 214 LMLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILRED 273
L+ A + G L+ + A ++ D TPL +AA+EGH+ ++E+LL GAD+ +D
Sbjct: 6 LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD 65
Query: 274 GEGLTALSWACMRGRIQAVTYLLDRDRGAMIEHVDINGLRPLDRAISCRNVPVVQCFLRK 333
+G T L A G ++ V LL GA + D +G PL A ++ +V+ L+
Sbjct: 66 KDGYTPLHLAAREGHLEIVEVLL--KAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKA 123
Query: 334 GA------KLGPTTWSMA 345
GA K G T + +A
Sbjct: 124 GADVNAQDKFGKTPFDLA 141
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 57/117 (48%), Gaps = 10/117 (8%)
Query: 76 SSRDLQAHWISSVCQSPAQALCSLRNVYSP--------NVKVSRLLLLSGADANHITEFL 127
++R+ + + ++ A ++ Y+P ++++ +LL +GAD N +
Sbjct: 42 AAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN-AKDKD 100
Query: 128 GAAPALCLFAHEGNSEMIALLLEFHACIDLANSQGRTPLSLAAGRGHMEAVRTLVAA 184
G P L L A EG+ E++ +LL+ A ++ + G+TP LA GH + L A
Sbjct: 101 GYTP-LHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAIREGHEDIAEVLQKA 156
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 81.3 bits (199), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 52/151 (34%), Positives = 75/151 (49%), Gaps = 15/151 (9%)
Query: 137 AHEGNSEMIALLLEFHACIDLANSQGRTPLSLAAGRGHMEAVRTLVAAGASLGRTDTTGR 196
A G + + +L+ A ++ + G TPL LAA GH+E V L+ AGA + D G
Sbjct: 10 ARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDG- 68
Query: 197 CALVHAARGGHLQNLSPLMLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHV 256
+PL LA +EGH E LL+ A ++ D TPL +AA+EGH+
Sbjct: 69 --------------YTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHL 114
Query: 257 GLLELLLDKGADILREDGEGLTALSWACMRG 287
++E+LL GAD+ +D G T A G
Sbjct: 115 EIVEVLLKAGADVNAQDKFGKTPFDLAIDNG 145
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/164 (33%), Positives = 78/164 (47%), Gaps = 17/164 (10%)
Query: 169 AAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPLMLAVKEGHWATAEK 228
AA G + VR L+A GA + D G +PL LA +EGH E
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDG---------------YTPLHLAAREGHLEIVEV 53
Query: 229 LLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILREDGEGLTALSWACMRGR 288
LL+ A ++ D TPL +AA+EGH+ ++E+LL GAD+ +D +G T L A G
Sbjct: 54 LLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGH 113
Query: 289 IQAVTYLLDRDRGAMIEHVDINGLRPLDRAISCRNVPVVQCFLR 332
++ V LL GA + D G P D AI N + + +
Sbjct: 114 LEIVEVLL--KAGADVNAQDKFGKTPFDLAIDNGNEDIAEVLQK 155
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 77/152 (50%), Gaps = 17/152 (11%)
Query: 111 RLLLLSGADANHITEFLGAAPALCLFAHEGNSEMIALLLEFHACIDLANSQGRTPLSLAA 170
R+L+ +GAD N + G P L L A EG+ E++ +LL+ A ++ + G TPL LAA
Sbjct: 19 RILMANGADVN-AKDKDGYTP-LHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAA 76
Query: 171 GRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPLMLAVKEGHWATAEKLL 230
GH+E V L+ AGA + D G +PL LA +EGH E LL
Sbjct: 77 REGHLEIVEVLLKAGADVNAKDKDG---------------YTPLHLAAREGHLEIVEVLL 121
Query: 231 QHHAPLDQTDGSHKTPLMIAAQEGHVGLLELL 262
+ A ++ D KTP +A G+ + E+L
Sbjct: 122 KAGADVNAQDKFGKTPFDLAIDNGNEDIAEVL 153
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 70/138 (50%), Gaps = 8/138 (5%)
Query: 214 LMLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILRED 273
L+ A + G L+ + A ++ D TPL +AA+EGH+ ++E+LL GAD+ +D
Sbjct: 6 LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD 65
Query: 274 GEGLTALSWACMRGRIQAVTYLLDRDRGAMIEHVDINGLRPLDRAISCRNVPVVQCFLRK 333
+G T L A G ++ V LL GA + D +G PL A ++ +V+ L+
Sbjct: 66 KDGYTPLHLAAREGHLEIVEVLL--KAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKA 123
Query: 334 GA------KLGPTTWSMA 345
GA K G T + +A
Sbjct: 124 GADVNAQDKFGKTPFDLA 141
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 57/117 (48%), Gaps = 10/117 (8%)
Query: 76 SSRDLQAHWISSVCQSPAQALCSLRNVYSP--------NVKVSRLLLLSGADANHITEFL 127
++R+ + + ++ A ++ Y+P ++++ +LL +GAD N +
Sbjct: 42 AAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN-AKDKD 100
Query: 128 GAAPALCLFAHEGNSEMIALLLEFHACIDLANSQGRTPLSLAAGRGHMEAVRTLVAA 184
G P L L A EG+ E++ +LL+ A ++ + G+TP LA G+ + L A
Sbjct: 101 GYTP-LHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAIDNGNEDIAEVLQKA 156
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 79.0 bits (193), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 66/203 (32%), Positives = 89/203 (43%), Gaps = 25/203 (12%)
Query: 101 NVYSP--------NVKVSRLLLLSGADANHITEFLGAAPALCLFAHEGNSEMIALLLEFH 152
N Y+P V+V+R LL G AN E + L L A EG++EM+ALLL
Sbjct: 211 NGYTPLHIAAKQNQVEVARSLLQYGGSAN--AESVQGVTPLHLAAQEGHAEMVALLLSKQ 268
Query: 153 ACIDLANSQGRTPLSLAAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLS 212
A +L N G TPL L A GH+ L+ G + T G +
Sbjct: 269 ANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMG---------------YT 313
Query: 213 PLMLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILRE 272
PL +A G+ + LLQH A ++ +PL AAQ+GH ++ LLL GA
Sbjct: 314 PLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEV 373
Query: 273 DGEGLTALSWACMRGRIQAVTYL 295
+G T L+ A G I L
Sbjct: 374 SSDGTTPLAIAKRLGYISVTDVL 396
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 68/221 (30%), Positives = 103/221 (46%), Gaps = 21/221 (9%)
Query: 102 VYSPNVKVSRLLLLSGADANHITEFLGAAPALCLFAHEGNSEMIALLLEFHACIDLANSQ 161
V+ N+ + +LLL G H + G P L + A + E+ LL++ + + Q
Sbjct: 187 VHHNNLDIVKLLLPRGGSP-HSPAWNGYTP-LHIAAKQNQVEVARSLLQYGGSANAESVQ 244
Query: 162 GRTPLSLAAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPLMLAVKEG 221
G TPL LAA GH E V L++ A+ + +G L+PL L +EG
Sbjct: 245 GVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSG---------------LTPLHLVAQEG 289
Query: 222 HWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILREDGEGLTALS 281
H A+ L++H +D T TPL +A+ G++ L++ LL AD+ + G + L
Sbjct: 290 HVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLH 349
Query: 282 WACMRGRIQAVTYLLDRDRGAMIEHVDINGLRPLDRAISCR 322
A +G VT LL GA V +G PL AI+ R
Sbjct: 350 QAAQQGHTDIVTLLL--KNGASPNEVSSDGTTPL--AIAKR 386
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 63/198 (31%), Positives = 92/198 (46%), Gaps = 20/198 (10%)
Query: 164 TPLSLAAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGH-------LQN------ 210
TPL +A+ GH+ V+ L+ GAS ++ L AAR GH LQN
Sbjct: 16 TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNA 75
Query: 211 -----LSPLMLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDK 265
+PL A + GH + LL+++A + + TPL IAA+EGHV + LL+K
Sbjct: 76 KAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEK 135
Query: 266 GADILREDGEGLTALSWACMRGRIQAVTYLLDRDRGAMIEHVDINGLRPLDRAISCRNVP 325
A +G T L A G+++ LL+RD A NGL PL A+ N+
Sbjct: 136 EASQACMTKKGFTPLHVAAKYGKVRVAELLLERD--AHPNAAGKNGLTPLHVAVHHNNLD 193
Query: 326 VVQCFLRKGAKLGPTTWS 343
+V+ L +G W+
Sbjct: 194 IVKLLLPRGGSPHSPAWN 211
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 63/220 (28%), Positives = 94/220 (42%), Gaps = 20/220 (9%)
Query: 140 GNSEMIALLLEFHACIDLANSQGRTPLSLAAGRGHMEAVRTLVAAGASLGRTDTTGRCAL 199
G++ M+ LLLE +A +LA + G TPL +AA GH+E V L+ AS G L
Sbjct: 91 GHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPL 150
Query: 200 VHAARGGHLQ------------------NLSPLMLAVKEGHWATAEKLLQHHAPLDQTDG 241
AA+ G ++ L+PL +AV + + LL
Sbjct: 151 HVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAW 210
Query: 242 SHKTPLMIAAQEGHVGLLELLLDKGADILREDGEGLTALSWACMRGRIQAVTYLLDRDRG 301
+ TPL IAA++ V + LL G E +G+T L A G + V LL +
Sbjct: 211 NGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQAN 270
Query: 302 AMIEHVDINGLRPLDRAISCRNVPVVQCFLRKGAKLGPTT 341
+ + +GL PL +VPV ++ G + TT
Sbjct: 271 GNLG--NKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATT 308
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 66/226 (29%), Positives = 93/226 (41%), Gaps = 19/226 (8%)
Query: 109 VSRLLLLSGADANHITEFLGAAPALCLFAHEGNSEMIALLLEFHACIDLANSQGRTPLSL 168
+ + LL GA N ++ P L + A G++E+ LL+ A ++ +TPL
Sbjct: 29 IVKNLLQRGASPN-VSNVKVETP-LHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHC 86
Query: 169 AAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPLMLAVKEGHWATAEK 228
AA GH V+ L+ A+ T G +PL +A +EGH T
Sbjct: 87 AARIGHTNMVKLLLENNANPNLATTAGH---------------TPLHIAAREGHVETVLA 131
Query: 229 LLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILREDGEGLTALSWACMRGR 288
LL+ A TPL +AA+ G V + ELLL++ A GLT L A
Sbjct: 132 LLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNN 191
Query: 289 IQAVTYLLDRDRGAMIEHVDINGLRPLDRAISCRNVPVVQCFLRKG 334
+ V LL RG NG PL A V V + L+ G
Sbjct: 192 LDIVKLLL--PRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYG 235
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 64/151 (42%), Gaps = 10/151 (6%)
Query: 211 LSPLMLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADIL 270
L+PL +A GH + LLQ A + ++ +TPL +AA+ GH + + LL A +
Sbjct: 15 LTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVN 74
Query: 271 REDGEGLTALSWACMRGRIQAVTYLLDRDRGAMIEHVDINGLRPLDRAISCRNVPVVQCF 330
+ + T L A G V LL+ + + G PL A +V V
Sbjct: 75 AKAKDDQTPLHCAARIGHTNMVKLLLENNANPNL--ATTAGHTPLHIAAREGHVETVLAL 132
Query: 331 LRKGA------KLGPTTWSMAA--GKPEVME 353
L K A K G T +AA GK V E
Sbjct: 133 LEKEASQACMTKKGFTPLHVAAKYGKVRVAE 163
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 48/149 (32%), Positives = 77/149 (51%), Gaps = 15/149 (10%)
Query: 140 GNSEMIALLLEFHACIDLANSQGRTPLSLAAGRGHMEAVRTLVAAGASLGRTDTTGRCAL 199
G + + +L+ A ++ + G TPL LAA G +E V L+ GA + +D+ G
Sbjct: 17 GQDDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNASDSAG---- 72
Query: 200 VHAARGGHLQNLSPLMLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLL 259
++PL LA +GH E LL+H A ++ D + TPL +AA G + ++
Sbjct: 73 -----------ITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIV 121
Query: 260 ELLLDKGADILREDGEGLTALSWACMRGR 288
E+LL GAD+ +D GLTA + +G+
Sbjct: 122 EVLLKHGADVNAQDALGLTAFDISINQGQ 150
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 76/152 (50%), Gaps = 17/152 (11%)
Query: 169 AAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPLMLAVKEGHWATAEK 228
AA G + VR L+A GA + TD G L+PL LA G E
Sbjct: 13 AAAAGQDDEVRILMANGADVNATDDNG---------------LTPLHLAAANGQLEIVEV 57
Query: 229 LLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILREDGEGLTALSWACMRGR 288
LL++ A ++ +D + TPL +AA +GH+ ++E+LL GAD+ D G T L A + G+
Sbjct: 58 LLKNGADVNASDSAGITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQ 117
Query: 289 IQAVTYLLDRDRGAMIEHVDINGLRPLDRAIS 320
++ V LL GA + D GL D +I+
Sbjct: 118 LEIVEVLL--KHGADVNAQDALGLTAFDISIN 147
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/152 (33%), Positives = 73/152 (48%), Gaps = 17/152 (11%)
Query: 111 RLLLLSGADANHITEFLGAAPALCLFAHEGNSEMIALLLEFHACIDLANSQGRTPLSLAA 170
R+L+ +GAD N T+ G P L L A G E++ +LL+ A ++ ++S G TPL LAA
Sbjct: 23 RILMANGADVN-ATDDNGLTP-LHLAAANGQLEIVEVLLKNGADVNASDSAGITPLHLAA 80
Query: 171 GRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPLMLAVKEGHWATAEKLL 230
GH+E V L+ GA + D G +PL LA G E LL
Sbjct: 81 YDGHLEIVEVLLKHGADVNAYDRAG---------------WTPLHLAALSGQLEIVEVLL 125
Query: 231 QHHAPLDQTDGSHKTPLMIAAQEGHVGLLELL 262
+H A ++ D T I+ +G L E+L
Sbjct: 126 KHGADVNAQDALGLTAFDISINQGQEDLAEIL 157
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 60/124 (48%), Gaps = 2/124 (1%)
Query: 214 LMLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILRED 273
L+ A G L+ + A ++ TD + TPL +AA G + ++E+LL GAD+ D
Sbjct: 10 LLEAAAAGQDDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNASD 69
Query: 274 GEGLTALSWACMRGRIQAVTYLLDRDRGAMIEHVDINGLRPLDRAISCRNVPVVQCFLRK 333
G+T L A G ++ V LL GA + D G PL A + +V+ L+
Sbjct: 70 SAGITPLHLAAYDGHLEIVEVLL--KHGADVNAYDRAGWTPLHLAALSGQLEIVEVLLKH 127
Query: 334 GAKL 337
GA +
Sbjct: 128 GADV 131
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/152 (32%), Positives = 75/152 (49%), Gaps = 15/152 (9%)
Query: 137 AHEGNSEMIALLLEFHACIDLANSQGRTPLSLAAGRGHMEAVRTLVAAGASLGRTDTTGR 196
A G + + +L+ A ++ ++ G TPL LAA GH+E V L+ GA + D G
Sbjct: 22 ARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAADVYG- 80
Query: 197 CALVHAARGGHLQNLSPLMLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHV 256
+PL LA GH E LL++ A ++ D + TPL +AA EGH+
Sbjct: 81 --------------FTPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHL 126
Query: 257 GLLELLLDKGADILREDGEGLTALSWACMRGR 288
++E+LL GAD+ +D G TA + G
Sbjct: 127 EIVEVLLKYGADVNAQDKFGKTAFDISIDNGN 158
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/164 (35%), Positives = 74/164 (45%), Gaps = 26/164 (15%)
Query: 169 AAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPLMLAVKEGHWATAEK 228
AA G + VR L+A GA + D TG L+PL LA GH E
Sbjct: 21 AARAGQDDEVRILIANGADVNAVDNTG---------------LTPLHLAAVSGHLEIVEV 65
Query: 229 LLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILREDGEGLTALSWACMRGR 288
LL+H A +D D TPL +AA GH+ ++E+LL GAD+ D G T L A G
Sbjct: 66 LLKHGADVDAADVYGFTPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGH 125
Query: 289 IQAVTYLLDRDRGAMIEHVDINGLRPLDRAI---------SCRN 323
++ V LL GA + D G D +I SCRN
Sbjct: 126 LEIVEVLL--KYGADVNAQDKFGKTAFDISIDNGNEDLAKSCRN 167
Score = 68.6 bits (166), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 51/145 (35%), Positives = 73/145 (50%), Gaps = 17/145 (11%)
Query: 111 RLLLLSGADANHITEFLGAAPALCLFAHEGNSEMIALLLEFHACIDLANSQGRTPLSLAA 170
R+L+ +GAD N + + G P L L A G+ E++ +LL+ A +D A+ G TPL LAA
Sbjct: 31 RILIANGADVNAV-DNTGLTP-LHLAAVSGHLEIVEVLLKHGADVDAADVYGFTPLHLAA 88
Query: 171 GRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPLMLAVKEGHWATAEKLL 230
GH+E V L+ GA + D TG +PL LA EGH E LL
Sbjct: 89 MTGHLEIVEVLLKYGADVNAFDMTGS---------------TPLHLAADEGHLEIVEVLL 133
Query: 231 QHHAPLDQTDGSHKTPLMIAAQEGH 255
++ A ++ D KT I+ G+
Sbjct: 134 KYGADVNAQDKFGKTAFDISIDNGN 158
Score = 61.2 bits (147), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 68/138 (49%), Gaps = 8/138 (5%)
Query: 214 LMLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILRED 273
L+ A + G L+ + A ++ D + TPL +AA GH+ ++E+LL GAD+ D
Sbjct: 18 LLEAARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAAD 77
Query: 274 GEGLTALSWACMRGRIQAVTYLLDRDRGAMIEHVDINGLRPLDRAISCRNVPVVQCFLRK 333
G T L A M G ++ V LL GA + D+ G PL A ++ +V+ L+
Sbjct: 78 VYGFTPLHLAAMTGHLEIVEVLL--KYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKY 135
Query: 334 GA------KLGPTTWSMA 345
GA K G T + ++
Sbjct: 136 GADVNAQDKFGKTAFDIS 153
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 107 VKVSRLLLLSGADANHITEFLGAAPALCLFAHEGNSEMIALLLEFHACIDLANSQGRTPL 166
+++ +LL GAD N + G+ P L L A EG+ E++ +LL++ A ++ + G+T
Sbjct: 93 LEIVEVLLKYGADVNAF-DMTGSTP-LHLAADEGHLEIVEVLLKYGADVNAQDKFGKTAF 150
Query: 167 SLAAGRGHMEAVRT 180
++ G+ + ++
Sbjct: 151 DISIDNGNEDLAKS 164
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/152 (33%), Positives = 79/152 (51%), Gaps = 17/152 (11%)
Query: 111 RLLLLSGADANHITEFLGAAPALCLFAHEGNSEMIALLLEFHACIDLANSQGRTPLSLAA 170
R+L+ +GAD N ++ G P L L + G+ E+I +LL++ A ++ ++ G TPL LAA
Sbjct: 31 RILMANGADVN-ANDWFGITP-LHLVVNNGHLEIIEVLLKYAADVNASDKSGWTPLHLAA 88
Query: 171 GRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPLMLAVKEGHWATAEKLL 230
RGH+E V L+ GA + D G +PL LA ++GH E LL
Sbjct: 89 YRGHLEIVEVLLKYGADVNAMDYQG---------------YTPLHLAAEDGHLEIVEVLL 133
Query: 231 QHHAPLDQTDGSHKTPLMIAAQEGHVGLLELL 262
++ A ++ D KT I+ G+ L E+L
Sbjct: 134 KYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 73/152 (48%), Gaps = 15/152 (9%)
Query: 137 AHEGNSEMIALLLEFHACIDLANSQGRTPLSLAAGRGHMEAVRTLVAAGASLGRTDTTGR 196
A G + + +L+ A ++ + G TPL L GH+E + L+ A + +D +G
Sbjct: 22 ARAGQDDEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNASDKSG- 80
Query: 197 CALVHAARGGHLQNLSPLMLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHV 256
+PL LA GH E LL++ A ++ D TPL +AA++GH+
Sbjct: 81 --------------WTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHL 126
Query: 257 GLLELLLDKGADILREDGEGLTALSWACMRGR 288
++E+LL GAD+ +D G TA + G
Sbjct: 127 EIVEVLLKYGADVNAQDKFGKTAFDISIDNGN 158
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 76/164 (46%), Gaps = 17/164 (10%)
Query: 169 AAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPLMLAVKEGHWATAEK 228
AA G + VR L+A GA + D G ++PL L V GH E
Sbjct: 21 AARAGQDDEVRILMANGADVNANDWFG---------------ITPLHLVVNNGHLEIIEV 65
Query: 229 LLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILREDGEGLTALSWACMRGR 288
LL++ A ++ +D S TPL +AA GH+ ++E+LL GAD+ D +G T L A G
Sbjct: 66 LLKYAADVNASDKSGWTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGH 125
Query: 289 IQAVTYLLDRDRGAMIEHVDINGLRPLDRAISCRNVPVVQCFLR 332
++ V LL GA + D G D +I N + + +
Sbjct: 126 LEIVEVLL--KYGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 64/138 (46%), Gaps = 8/138 (5%)
Query: 214 LMLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILRED 273
L+ A + G L+ + A ++ D TPL + GH+ ++E+LL AD+ D
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNASD 77
Query: 274 GEGLTALSWACMRGRIQAVTYLLDRDRGAMIEHVDINGLRPLDRAISCRNVPVVQCFLRK 333
G T L A RG ++ V LL GA + +D G PL A ++ +V+ L+
Sbjct: 78 KSGWTPLHLAAYRGHLEIVEVLL--KYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKY 135
Query: 334 GA------KLGPTTWSMA 345
GA K G T + ++
Sbjct: 136 GADVNAQDKFGKTAFDIS 153
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/152 (36%), Positives = 80/152 (52%), Gaps = 17/152 (11%)
Query: 111 RLLLLSGADANHITEFLGAAPALCLFAHEGNSEMIALLLEFHACIDLANSQGRTPLSLAA 170
R+L+ +GAD N +F G P L L AH G+ E++ +LL+ A ++ +S G TPL LAA
Sbjct: 31 RILMANGADVN-ARDFTGWTP-LHLAAHFGHLEIVEVLLKNGADVNAKDSLGVTPLHLAA 88
Query: 171 GRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPLMLAVKEGHWATAEKLL 230
RGH+E V L+ GA + +D+ G +PL LA K GH E LL
Sbjct: 89 RRGHLEIVEVLLKNGADVNASDSHG---------------FTPLHLAAKRGHLEIVEVLL 133
Query: 231 QHHAPLDQTDGSHKTPLMIAAQEGHVGLLELL 262
++ A ++ D KT I+ G+ L E+L
Sbjct: 134 KNGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 74.7 bits (182), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 77/152 (50%), Gaps = 15/152 (9%)
Query: 137 AHEGNSEMIALLLEFHACIDLANSQGRTPLSLAAGRGHMEAVRTLVAAGASLGRTDTTGR 196
A G + + +L+ A ++ + G TPL LAA GH+E V L+ GA + D+ G
Sbjct: 22 ARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKDSLG- 80
Query: 197 CALVHAARGGHLQNLSPLMLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHV 256
++PL LA + GH E LL++ A ++ +D TPL +AA+ GH+
Sbjct: 81 --------------VTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHL 126
Query: 257 GLLELLLDKGADILREDGEGLTALSWACMRGR 288
++E+LL GAD+ +D G TA + G
Sbjct: 127 EIVEVLLKNGADVNAQDKFGKTAFDISIDNGN 158
Score = 68.6 bits (166), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 53/164 (32%), Positives = 75/164 (45%), Gaps = 17/164 (10%)
Query: 169 AAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPLMLAVKEGHWATAEK 228
AA G + VR L+A GA + D TG +PL LA GH E
Sbjct: 21 AARAGQDDEVRILMANGADVNARDFTG---------------WTPLHLAAHFGHLEIVEV 65
Query: 229 LLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILREDGEGLTALSWACMRGR 288
LL++ A ++ D TPL +AA+ GH+ ++E+LL GAD+ D G T L A RG
Sbjct: 66 LLKNGADVNAKDSLGVTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGH 125
Query: 289 IQAVTYLLDRDRGAMIEHVDINGLRPLDRAISCRNVPVVQCFLR 332
++ V LL GA + D G D +I N + + +
Sbjct: 126 LEIVEVLL--KNGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 70/138 (50%), Gaps = 8/138 (5%)
Query: 214 LMLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILRED 273
L+ A + G L+ + A ++ D + TPL +AA GH+ ++E+LL GAD+ +D
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKD 77
Query: 274 GEGLTALSWACMRGRIQAVTYLLDRDRGAMIEHVDINGLRPLDRAISCRNVPVVQCFLRK 333
G+T L A RG ++ V LL GA + D +G PL A ++ +V+ L+
Sbjct: 78 SLGVTPLHLAARRGHLEIVEVLL--KNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLKN 135
Query: 334 GA------KLGPTTWSMA 345
GA K G T + ++
Sbjct: 136 GADVNAQDKFGKTAFDIS 153
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 75.9 bits (185), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 50/152 (32%), Positives = 75/152 (49%), Gaps = 15/152 (9%)
Query: 137 AHEGNSEMIALLLEFHACIDLANSQGRTPLSLAAGRGHMEAVRTLVAAGASLGRTDTTGR 196
A G + + +L+ A ++ ++ G TPL LAA GH+E V L+ GA + D +G
Sbjct: 22 ARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALDFSGS 81
Query: 197 CALVHAARGGHLQNLSPLMLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHV 256
+PL LA K GH E LL++ A ++ D TPL +AA GH+
Sbjct: 82 ---------------TPLHLAAKRGHLEIVEVLLKYGADVNADDTIGSTPLHLAADTGHL 126
Query: 257 GLLELLLDKGADILREDGEGLTALSWACMRGR 288
++E+LL GAD+ +D G TA + G
Sbjct: 127 EIVEVLLKYGADVNAQDKFGKTAFDISIDNGN 158
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 75/152 (49%), Gaps = 17/152 (11%)
Query: 111 RLLLLSGADANHITEFLGAAPALCLFAHEGNSEMIALLLEFHACIDLANSQGRTPLSLAA 170
R+L+ +GAD N + G P L L A G+ E++ +LL+ A ++ + G TPL LAA
Sbjct: 31 RILMANGADVNAEDTY-GDTP-LHLAARVGHLEIVEVLLKNGADVNALDFSGSTPLHLAA 88
Query: 171 GRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPLMLAVKEGHWATAEKLL 230
RGH+E V L+ GA + DT G +PL LA GH E LL
Sbjct: 89 KRGHLEIVEVLLKYGADVNADDTIGS---------------TPLHLAADTGHLEIVEVLL 133
Query: 231 QHHAPLDQTDGSHKTPLMIAAQEGHVGLLELL 262
++ A ++ D KT I+ G+ L E+L
Sbjct: 134 KYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/162 (32%), Positives = 76/162 (46%), Gaps = 17/162 (10%)
Query: 169 AAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPLMLAVKEGHWATAEK 228
AA G + VR L+A GA + DT G +PL LA + GH E
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDTYGD---------------TPLHLAARVGHLEIVEV 65
Query: 229 LLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILREDGEGLTALSWACMRGR 288
LL++ A ++ D S TPL +AA+ GH+ ++E+LL GAD+ +D G T L A G
Sbjct: 66 LLKNGADVNALDFSGSTPLHLAAKRGHLEIVEVLLKYGADVNADDTIGSTPLHLAADTGH 125
Query: 289 IQAVTYLLDRDRGAMIEHVDINGLRPLDRAISCRNVPVVQCF 330
++ V LL GA + D G D +I N + +
Sbjct: 126 LEIVEVLL--KYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 67/138 (48%), Gaps = 8/138 (5%)
Query: 214 LMLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILRED 273
L+ A + G L+ + A ++ D TPL +AA+ GH+ ++E+LL GAD+ D
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALD 77
Query: 274 GEGLTALSWACMRGRIQAVTYLLDRDRGAMIEHVDINGLRPLDRAISCRNVPVVQCFLRK 333
G T L A RG ++ V LL GA + D G PL A ++ +V+ L+
Sbjct: 78 FSGSTPLHLAAKRGHLEIVEVLL--KYGADVNADDTIGSTPLHLAADTGHLEIVEVLLKY 135
Query: 334 GA------KLGPTTWSMA 345
GA K G T + ++
Sbjct: 136 GADVNAQDKFGKTAFDIS 153
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 75.5 bits (184), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 50/152 (32%), Positives = 75/152 (49%), Gaps = 15/152 (9%)
Query: 137 AHEGNSEMIALLLEFHACIDLANSQGRTPLSLAAGRGHMEAVRTLVAAGASLGRTDTTGR 196
A G + + +L+ A ++ + G+TPL LAA +GH+E V L+ GA + D G
Sbjct: 22 ARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADKMGD 81
Query: 197 CALVHAARGGHLQNLSPLMLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHV 256
+PL LA GH E LL++ A ++ TD TPL +AA GH+
Sbjct: 82 ---------------TPLHLAALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHL 126
Query: 257 GLLELLLDKGADILREDGEGLTALSWACMRGR 288
++E+LL GAD+ +D G TA + G
Sbjct: 127 EIVEVLLKYGADVNAQDKFGKTAFDISIDNGN 158
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 77/152 (50%), Gaps = 17/152 (11%)
Query: 111 RLLLLSGADANHITEFLGAAPALCLFAHEGNSEMIALLLEFHACIDLANSQGRTPLSLAA 170
R+L+ +GAD N + G P L L A +G+ E++ +LL+ A ++ A+ G TPL LAA
Sbjct: 31 RILMANGADVN-AEDDSGKTP-LHLAAIKGHLEIVEVLLKHGADVNAADKMGDTPLHLAA 88
Query: 171 GRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPLMLAVKEGHWATAEKLL 230
GH+E V L+ GA + TDT G +PL LA GH E LL
Sbjct: 89 LYGHLEIVEVLLKNGADVNATDTYG---------------FTPLHLAADAGHLEIVEVLL 133
Query: 231 QHHAPLDQTDGSHKTPLMIAAQEGHVGLLELL 262
++ A ++ D KT I+ G+ L E+L
Sbjct: 134 KYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 75/164 (45%), Gaps = 17/164 (10%)
Query: 169 AAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPLMLAVKEGHWATAEK 228
AA G + VR L+A GA + D +G+ +PL LA +GH E
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDDSGK---------------TPLHLAAIKGHLEIVEV 65
Query: 229 LLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILREDGEGLTALSWACMRGR 288
LL+H A ++ D TPL +AA GH+ ++E+LL GAD+ D G T L A G
Sbjct: 66 LLKHGADVNAADKMGDTPLHLAALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGH 125
Query: 289 IQAVTYLLDRDRGAMIEHVDINGLRPLDRAISCRNVPVVQCFLR 332
++ V LL GA + D G D +I N + + +
Sbjct: 126 LEIVEVLL--KYGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 69/138 (50%), Gaps = 8/138 (5%)
Query: 214 LMLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILRED 273
L+ A + G L+ + A ++ D S KTPL +AA +GH+ ++E+LL GAD+ D
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAAD 77
Query: 274 GEGLTALSWACMRGRIQAVTYLLDRDRGAMIEHVDINGLRPLDRAISCRNVPVVQCFLRK 333
G T L A + G ++ V LL GA + D G PL A ++ +V+ L+
Sbjct: 78 KMGDTPLHLAALYGHLEIVEVLL--KNGADVNATDTYGFTPLHLAADAGHLEIVEVLLKY 135
Query: 334 GA------KLGPTTWSMA 345
GA K G T + ++
Sbjct: 136 GADVNAQDKFGKTAFDIS 153
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 75.5 bits (184), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 61/202 (30%), Positives = 92/202 (45%), Gaps = 18/202 (8%)
Query: 137 AHEGNSEMIALLLEFHACIDLANSQGRTPLSLAAGRGHMEAVRTLVAAGASLGRTDTTGR 196
A G+ ++ +L++ A ID + RTPL AA H+EAV+ L+ AGA + D G
Sbjct: 19 AEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGS 78
Query: 197 CALVHAARGGHLQNLSPLMLAVKEGHWATAEKLLQH-HAPLDQTDGSHKTPLMIAAQEGH 255
+ L LA K+GH+ + LL + ++ D TP++ A + H
Sbjct: 79 ---------------TCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKH 123
Query: 256 VGLLELLLDKGADILREDGEGLTALSWACMRGRIQAVTYLLDRDRGAMIEHVDINGLRPL 315
V L++LLL KG+DI D E L WA G + LL + V+I+G PL
Sbjct: 124 VDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILL--AAKCDLHAVNIHGDSPL 181
Query: 316 DRAISCRNVPVVQCFLRKGAKL 337
A V FL + + +
Sbjct: 182 HIAARENRYDCVVLFLSRDSDV 203
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 64/133 (48%), Gaps = 3/133 (2%)
Query: 207 HLQNLSPLMLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKG 266
H SPL A + GH L+Q A +D +TPLM AA+ H+ ++ L+ G
Sbjct: 8 HQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAG 67
Query: 267 ADILREDGEGLTALSWACMRGRIQAVTYLLDRDRGAM-IEHVDINGLRPLDRAISCRNVP 325
A + +D EG T L A +G + V YLL G M + D G P+ A ++V
Sbjct: 68 ALVDPKDAEGSTCLHLAAKKGHYEVVQYLL--SNGQMDVNCQDDGGWTPMIWATEYKHVD 125
Query: 326 VVQCFLRKGAKLG 338
+V+ L KG+ +
Sbjct: 126 LVKLLLSKGSDIN 138
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/152 (32%), Positives = 74/152 (48%), Gaps = 15/152 (9%)
Query: 137 AHEGNSEMIALLLEFHACIDLANSQGRTPLSLAAGRGHMEAVRTLVAAGASLGRTDTTGR 196
A G + + +L+ A + + GRTPL +AA GH+E V L+ GA + DT G
Sbjct: 10 ARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTNGT 69
Query: 197 CALVHAARGGHLQNLSPLMLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHV 256
+PL LA GH E LL++ A ++ D + TPL +AA GH+
Sbjct: 70 ---------------TPLHLAASLGHLEIVEVLLKYGADVNAKDATGITPLYLAAYWGHL 114
Query: 257 GLLELLLDKGADILREDGEGLTALSWACMRGR 288
++E+LL GAD+ +D G TA + G
Sbjct: 115 EIVEVLLKHGADVNAQDKFGKTAFDISIDIGN 146
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 76/152 (50%), Gaps = 17/152 (11%)
Query: 111 RLLLLSGADANHITEFLGAAPALCLFAHEGNSEMIALLLEFHACIDLANSQGRTPLSLAA 170
R+L+ +GADAN + G P L + A G+ E++ +LL A ++ ++ G TPL LAA
Sbjct: 19 RILMANGADANAYDHY-GRTP-LHMAAAVGHLEIVEVLLRNGADVNAVDTNGTTPLHLAA 76
Query: 171 GRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPLMLAVKEGHWATAEKLL 230
GH+E V L+ GA + D TG ++PL LA GH E LL
Sbjct: 77 SLGHLEIVEVLLKYGADVNAKDATG---------------ITPLYLAAYWGHLEIVEVLL 121
Query: 231 QHHAPLDQTDGSHKTPLMIAAQEGHVGLLELL 262
+H A ++ D KT I+ G+ L E+L
Sbjct: 122 KHGADVNAQDKFGKTAFDISIDIGNEDLAEIL 153
Score = 64.7 bits (156), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 74/162 (45%), Gaps = 17/162 (10%)
Query: 169 AAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPLMLAVKEGHWATAEK 228
AA G + VR L+A GA D GR +PL +A GH E
Sbjct: 9 AARAGQDDEVRILMANGADANAYDHYGR---------------TPLHMAAAVGHLEIVEV 53
Query: 229 LLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILREDGEGLTALSWACMRGR 288
LL++ A ++ D + TPL +AA GH+ ++E+LL GAD+ +D G+T L A G
Sbjct: 54 LLRNGADVNAVDTNGTTPLHLAASLGHLEIVEVLLKYGADVNAKDATGITPLYLAAYWGH 113
Query: 289 IQAVTYLLDRDRGAMIEHVDINGLRPLDRAISCRNVPVVQCF 330
++ V LL GA + D G D +I N + +
Sbjct: 114 LEIVEVLL--KHGADVNAQDKFGKTAFDISIDIGNEDLAEIL 153
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 66/138 (47%), Gaps = 8/138 (5%)
Query: 214 LMLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILRED 273
L+ A + G L+ + A + D +TPL +AA GH+ ++E+LL GAD+ D
Sbjct: 6 LLEAARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVD 65
Query: 274 GEGLTALSWACMRGRIQAVTYLLDRDRGAMIEHVDINGLRPLDRAISCRNVPVVQCFLRK 333
G T L A G ++ V LL GA + D G+ PL A ++ +V+ L+
Sbjct: 66 TNGTTPLHLAASLGHLEIVEVLL--KYGADVNAKDATGITPLYLAAYWGHLEIVEVLLKH 123
Query: 334 GA------KLGPTTWSMA 345
GA K G T + ++
Sbjct: 124 GADVNAQDKFGKTAFDIS 141
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/152 (32%), Positives = 73/152 (48%), Gaps = 15/152 (9%)
Query: 137 AHEGNSEMIALLLEFHACIDLANSQGRTPLSLAAGRGHMEAVRTLVAAGASLGRTDTTGR 196
A G + + +L+ A ++ + G TPL LAA GH+E V L+ GA + D G
Sbjct: 22 ARAGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWDNYGA 81
Query: 197 CALVHAARGGHLQNLSPLMLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHV 256
+PL LA GH E LL+H A ++ D TPL +AA +GH+
Sbjct: 82 ---------------TPLHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHL 126
Query: 257 GLLELLLDKGADILREDGEGLTALSWACMRGR 288
++E+LL GAD+ +D G TA + G
Sbjct: 127 EIVEVLLKYGADVNAQDKFGKTAFDISIDNGN 158
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 79/152 (51%), Gaps = 17/152 (11%)
Query: 111 RLLLLSGADANHITEFLGAAPALCLFAHEGNSEMIALLLEFHACIDLANSQGRTPLSLAA 170
R+L+ +GAD N T++LG P L L A G+ E++ +LL++ A ++ ++ G TPL LAA
Sbjct: 31 RILMANGADVN-ATDWLGHTP-LHLAAKTGHLEIVEVLLKYGADVNAWDNYGATPLHLAA 88
Query: 171 GRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPLMLAVKEGHWATAEKLL 230
GH+E V L+ GA + D G +PL LA +GH E LL
Sbjct: 89 DNGHLEIVEVLLKHGADVNAKDYEG---------------FTPLHLAAYDGHLEIVEVLL 133
Query: 231 QHHAPLDQTDGSHKTPLMIAAQEGHVGLLELL 262
++ A ++ D KT I+ G+ L E+L
Sbjct: 134 KYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 71.6 bits (174), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 54/164 (32%), Positives = 76/164 (46%), Gaps = 17/164 (10%)
Query: 169 AAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPLMLAVKEGHWATAEK 228
AA G + VR L+A GA + TD G +PL LA K GH E
Sbjct: 21 AARAGQDDEVRILMANGADVNATDWLGH---------------TPLHLAAKTGHLEIVEV 65
Query: 229 LLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILREDGEGLTALSWACMRGR 288
LL++ A ++ D TPL +AA GH+ ++E+LL GAD+ +D EG T L A G
Sbjct: 66 LLKYGADVNAWDNYGATPLHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGH 125
Query: 289 IQAVTYLLDRDRGAMIEHVDINGLRPLDRAISCRNVPVVQCFLR 332
++ V LL GA + D G D +I N + + +
Sbjct: 126 LEIVEVLL--KYGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 67/138 (48%), Gaps = 8/138 (5%)
Query: 214 LMLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILRED 273
L+ A + G L+ + A ++ TD TPL +AA+ GH+ ++E+LL GAD+ D
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWD 77
Query: 274 GEGLTALSWACMRGRIQAVTYLLDRDRGAMIEHVDINGLRPLDRAISCRNVPVVQCFLRK 333
G T L A G ++ V LL GA + D G PL A ++ +V+ L+
Sbjct: 78 NYGATPLHLAADNGHLEIVEVLL--KHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKY 135
Query: 334 GA------KLGPTTWSMA 345
GA K G T + ++
Sbjct: 136 GADVNAQDKFGKTAFDIS 153
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/152 (33%), Positives = 75/152 (49%), Gaps = 15/152 (9%)
Query: 137 AHEGNSEMIALLLEFHACIDLANSQGRTPLSLAAGRGHMEAVRTLVAAGASLGRTDTTGR 196
A G + + +L+ A ++ A+ G TPL LAA GH+E V L+ GA + DT G
Sbjct: 22 ARAGRDDEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYDTLGS 81
Query: 197 CALVHAARGGHLQNLSPLMLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHV 256
+PL LA GH E LL++ A ++ D + TPL +AA GH+
Sbjct: 82 ---------------TPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGITPLHLAANRGHL 126
Query: 257 GLLELLLDKGADILREDGEGLTALSWACMRGR 288
++E+LL GAD+ +D G TA + G
Sbjct: 127 EIVEVLLKYGADVNAQDKFGKTAFDISINNGN 158
Score = 67.8 bits (164), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 50/152 (32%), Positives = 77/152 (50%), Gaps = 17/152 (11%)
Query: 111 RLLLLSGADANHITEFLGAAPALCLFAHEGNSEMIALLLEFHACIDLANSQGRTPLSLAA 170
R+L+ +GAD N + +G P L L A+ G+ E++ +LL+ A ++ ++ G TPL LAA
Sbjct: 31 RILMANGADVN-AADVVGWTP-LHLAAYWGHLEIVEVLLKNGADVNAYDTLGSTPLHLAA 88
Query: 171 GRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPLMLAVKEGHWATAEKLL 230
GH+E V L+ GA + D G ++PL LA GH E LL
Sbjct: 89 HFGHLEIVEVLLKNGADVNAKDDNG---------------ITPLHLAANRGHLEIVEVLL 133
Query: 231 QHHAPLDQTDGSHKTPLMIAAQEGHVGLLELL 262
++ A ++ D KT I+ G+ L E+L
Sbjct: 134 KYGADVNAQDKFGKTAFDISINNGNEDLAEIL 165
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 76/164 (46%), Gaps = 17/164 (10%)
Query: 169 AAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPLMLAVKEGHWATAEK 228
AA G + VR L+A GA + D G +PL LA GH E
Sbjct: 21 AARAGRDDEVRILMANGADVNAADVVG---------------WTPLHLAAYWGHLEIVEV 65
Query: 229 LLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILREDGEGLTALSWACMRGR 288
LL++ A ++ D TPL +AA GH+ ++E+LL GAD+ +D G+T L A RG
Sbjct: 66 LLKNGADVNAYDTLGSTPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGITPLHLAANRGH 125
Query: 289 IQAVTYLLDRDRGAMIEHVDINGLRPLDRAISCRNVPVVQCFLR 332
++ V LL GA + D G D +I+ N + + +
Sbjct: 126 LEIVEVLL--KYGADVNAQDKFGKTAFDISINNGNEDLAEILQK 167
Score = 54.7 bits (130), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 68/138 (49%), Gaps = 8/138 (5%)
Query: 214 LMLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILRED 273
L+ A + G L+ + A ++ D TPL +AA GH+ ++E+LL GAD+ D
Sbjct: 18 LLEAARAGRDDEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYD 77
Query: 274 GEGLTALSWACMRGRIQAVTYLLDRDRGAMIEHVDINGLRPLDRAISCRNVPVVQCFLRK 333
G T L A G ++ V LL GA + D NG+ PL A + ++ +V+ L+
Sbjct: 78 TLGSTPLHLAAHFGHLEIVEVLL--KNGADVNAKDDNGITPLHLAANRGHLEIVEVLLKY 135
Query: 334 GA------KLGPTTWSMA 345
GA K G T + ++
Sbjct: 136 GADVNAQDKFGKTAFDIS 153
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/152 (33%), Positives = 73/152 (48%), Gaps = 15/152 (9%)
Query: 137 AHEGNSEMIALLLEFHACIDLANSQGRTPLSLAAGRGHMEAVRTLVAAGASLGRTDTTGR 196
A G + + +L+ A ++ + QG TPL LAA GH E V L+ GA + DT G
Sbjct: 22 ARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTDG- 80
Query: 197 CALVHAARGGHLQNLSPLMLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHV 256
+PL LA GH E LL++ A ++ D TPL +AA GH+
Sbjct: 81 --------------WTPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHL 126
Query: 257 GLLELLLDKGADILREDGEGLTALSWACMRGR 288
++E+LL GAD+ +D G TA + G
Sbjct: 127 EIVEVLLKHGADVNAQDKFGKTAFDISIDNGN 158
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/164 (32%), Positives = 75/164 (45%), Gaps = 17/164 (10%)
Query: 169 AAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPLMLAVKEGHWATAEK 228
AA G + VR L+A GA + D G +PL LA GH E
Sbjct: 21 AARAGQDDEVRILMANGADVNAHDDQGS---------------TPLHLAAWIGHPEIVEV 65
Query: 229 LLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILREDGEGLTALSWACMRGR 288
LL+H A ++ D TPL +AA GH+ ++E+LL GAD+ +D GLT L A RG
Sbjct: 66 LLKHGADVNARDTDGWTPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGH 125
Query: 289 IQAVTYLLDRDRGAMIEHVDINGLRPLDRAISCRNVPVVQCFLR 332
++ V LL GA + D G D +I N + + +
Sbjct: 126 LEIVEVLL--KHGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 66/138 (47%), Gaps = 8/138 (5%)
Query: 214 LMLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILRED 273
L+ A + G L+ + A ++ D TPL +AA GH ++E+LL GAD+ D
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARD 77
Query: 274 GEGLTALSWACMRGRIQAVTYLLDRDRGAMIEHVDINGLRPLDRAISCRNVPVVQCFLRK 333
+G T L A G ++ V LL GA + D GL PL A ++ +V+ L+
Sbjct: 78 TDGWTPLHLAADNGHLEIVEVLL--KYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKH 135
Query: 334 GA------KLGPTTWSMA 345
GA K G T + ++
Sbjct: 136 GADVNAQDKFGKTAFDIS 153
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 78/152 (51%), Gaps = 17/152 (11%)
Query: 111 RLLLLSGADANHITEFLGAAPALCLFAHEGNSEMIALLLEFHACIDLANSQGRTPLSLAA 170
R+L+ +GAD N ++ +G P L L A+ G+ E++ +LL+ A ++ +S G TPL LAA
Sbjct: 31 RILMANGADVN-ASDHVGWTP-LHLAAYFGHLEIVEVLLKNGADVNADDSLGVTPLHLAA 88
Query: 171 GRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPLMLAVKEGHWATAEKLL 230
RGH+E V L+ GA + D G +PL LA GH E LL
Sbjct: 89 DRGHLEVVEVLLKNGADVNANDHNG---------------FTPLHLAANIGHLEIVEVLL 133
Query: 231 QHHAPLDQTDGSHKTPLMIAAQEGHVGLLELL 262
+H A ++ D KT I+ G+ L E+L
Sbjct: 134 KHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 72.4 bits (176), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 76/152 (50%), Gaps = 15/152 (9%)
Query: 137 AHEGNSEMIALLLEFHACIDLANSQGRTPLSLAAGRGHMEAVRTLVAAGASLGRTDTTGR 196
A G + + +L+ A ++ ++ G TPL LAA GH+E V L+ GA + D+ G
Sbjct: 22 ARAGQDDEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADDSLG- 80
Query: 197 CALVHAARGGHLQNLSPLMLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHV 256
++PL LA GH E LL++ A ++ D + TPL +AA GH+
Sbjct: 81 --------------VTPLHLAADRGHLEVVEVLLKNGADVNANDHNGFTPLHLAANIGHL 126
Query: 257 GLLELLLDKGADILREDGEGLTALSWACMRGR 288
++E+LL GAD+ +D G TA + G
Sbjct: 127 EIVEVLLKHGADVNAQDKFGKTAFDISIDNGN 158
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 71/138 (51%), Gaps = 8/138 (5%)
Query: 214 LMLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILRED 273
L+ A + G L+ + A ++ +D TPL +AA GH+ ++E+LL GAD+ +D
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADD 77
Query: 274 GEGLTALSWACMRGRIQAVTYLLDRDRGAMIEHVDINGLRPLDRAISCRNVPVVQCFLRK 333
G+T L A RG ++ V LL GA + D NG PL A + ++ +V+ L+
Sbjct: 78 SLGVTPLHLAADRGHLEVVEVLL--KNGADVNANDHNGFTPLHLAANIGHLEIVEVLLKH 135
Query: 334 GA------KLGPTTWSMA 345
GA K G T + ++
Sbjct: 136 GADVNAQDKFGKTAFDIS 153
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 51/164 (31%), Positives = 73/164 (44%), Gaps = 17/164 (10%)
Query: 169 AAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPLMLAVKEGHWATAEK 228
AA G + VR L+A GA + +D G +PL LA GH E
Sbjct: 21 AARAGQDDEVRILMANGADVNASDHVG---------------WTPLHLAAYFGHLEIVEV 65
Query: 229 LLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILREDGEGLTALSWACMRGR 288
LL++ A ++ D TPL +AA GH+ ++E+LL GAD+ D G T L A G
Sbjct: 66 LLKNGADVNADDSLGVTPLHLAADRGHLEVVEVLLKNGADVNANDHNGFTPLHLAANIGH 125
Query: 289 IQAVTYLLDRDRGAMIEHVDINGLRPLDRAISCRNVPVVQCFLR 332
++ V LL GA + D G D +I N + + +
Sbjct: 126 LEIVEVLL--KHGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 72.0 bits (175), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 76/152 (50%), Gaps = 15/152 (9%)
Query: 137 AHEGNSEMIALLLEFHACIDLANSQGRTPLSLAAGRGHMEAVRTLVAAGASLGRTDTTGR 196
A G + + +L+ A ++ A++ G TPL LAA GH+E V L+ GA + +D G
Sbjct: 22 ARAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASDVFG- 80
Query: 197 CALVHAARGGHLQNLSPLMLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHV 256
+PL LA GH E LL++ A ++ D TPL +AA+ G++
Sbjct: 81 --------------YTPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYL 126
Query: 257 GLLELLLDKGADILREDGEGLTALSWACMRGR 288
++E+LL GAD+ +D G TA + G
Sbjct: 127 EIVEVLLKHGADVNAQDKFGKTAFDISIDNGN 158
Score = 71.2 bits (173), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 57/171 (33%), Positives = 79/171 (46%), Gaps = 18/171 (10%)
Query: 162 GRTPLSLAAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPLMLAVKEG 221
GR L AA G + VR L+A GA + D TG +PL LA G
Sbjct: 15 GRKLLE-AARAGQDDEVRILMANGADVNAADNTGT---------------TPLHLAAYSG 58
Query: 222 HWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILREDGEGLTALS 281
H E LL+H A +D +D TPL +AA GH+ ++E+LL GAD+ D +G+T L
Sbjct: 59 HLEIVEVLLKHGADVDASDVFGYTPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLH 118
Query: 282 WACMRGRIQAVTYLLDRDRGAMIEHVDINGLRPLDRAISCRNVPVVQCFLR 332
A G ++ V LL GA + D G D +I N + + +
Sbjct: 119 LAAKWGYLEIVEVLL--KHGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 78/152 (51%), Gaps = 17/152 (11%)
Query: 111 RLLLLSGADANHITEFLGAAPALCLFAHEGNSEMIALLLEFHACIDLANSQGRTPLSLAA 170
R+L+ +GAD N + G P L L A+ G+ E++ +LL+ A +D ++ G TPL LAA
Sbjct: 31 RILMANGADVN-AADNTGTTP-LHLAAYSGHLEIVEVLLKHGADVDASDVFGYTPLHLAA 88
Query: 171 GRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPLMLAVKEGHWATAEKLL 230
GH+E V L+ GA + D+ G ++PL LA K G+ E LL
Sbjct: 89 YWGHLEIVEVLLKNGADVNAMDSDG---------------MTPLHLAAKWGYLEIVEVLL 133
Query: 231 QHHAPLDQTDGSHKTPLMIAAQEGHVGLLELL 262
+H A ++ D KT I+ G+ L E+L
Sbjct: 134 KHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 68/138 (49%), Gaps = 8/138 (5%)
Query: 214 LMLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILRED 273
L+ A + G L+ + A ++ D + TPL +AA GH+ ++E+LL GAD+ D
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASD 77
Query: 274 GEGLTALSWACMRGRIQAVTYLLDRDRGAMIEHVDINGLRPLDRAISCRNVPVVQCFLRK 333
G T L A G ++ V LL GA + +D +G+ PL A + +V+ L+
Sbjct: 78 VFGYTPLHLAAYWGHLEIVEVLL--KNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKH 135
Query: 334 GA------KLGPTTWSMA 345
GA K G T + ++
Sbjct: 136 GADVNAQDKFGKTAFDIS 153
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 71.6 bits (174), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 50/152 (32%), Positives = 73/152 (48%), Gaps = 15/152 (9%)
Query: 137 AHEGNSEMIALLLEFHACIDLANSQGRTPLSLAAGRGHMEAVRTLVAAGASLGRTDTTGR 196
A G + + +L+ A ++ ++ G TPL LAA GH+E V L+ GA + D G
Sbjct: 22 ARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIXGS 81
Query: 197 CALVHAARGGHLQNLSPLMLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHV 256
+PL LA GH E LL+H A ++ D TPL +AA GH+
Sbjct: 82 ---------------TPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHL 126
Query: 257 GLLELLLDKGADILREDGEGLTALSWACMRGR 288
++E+LL GAD+ +D G TA + G
Sbjct: 127 EIVEVLLKHGADVNAQDKFGKTAFDISIDNGN 158
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/164 (32%), Positives = 76/164 (46%), Gaps = 17/164 (10%)
Query: 169 AAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPLMLAVKEGHWATAEK 228
AA G + VR L+A GA + TD +G L+PL LA GH E
Sbjct: 21 AARAGQDDEVRILMANGADVNATDASG---------------LTPLHLAATYGHLEIVEV 65
Query: 229 LLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILREDGEGLTALSWACMRGR 288
LL+H A ++ D TPL +AA GH+ ++E+LL GAD+ D G T L A + G
Sbjct: 66 LLKHGADVNAIDIXGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGH 125
Query: 289 IQAVTYLLDRDRGAMIEHVDINGLRPLDRAISCRNVPVVQCFLR 332
++ V LL GA + D G D +I N + + +
Sbjct: 126 LEIVEVLL--KHGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 64.7 bits (156), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 75/152 (49%), Gaps = 17/152 (11%)
Query: 111 RLLLLSGADANHITEFLGAAPALCLFAHEGNSEMIALLLEFHACIDLANSQGRTPLSLAA 170
R+L+ +GAD N T+ G P L L A G+ E++ +LL+ A ++ + G TPL LAA
Sbjct: 31 RILMANGADVN-ATDASGLTP-LHLAATYGHLEIVEVLLKHGADVNAIDIXGSTPLHLAA 88
Query: 171 GRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPLMLAVKEGHWATAEKLL 230
GH+E V L+ GA + DT G +PL LA GH E LL
Sbjct: 89 LIGHLEIVEVLLKHGADVNAVDTWGD---------------TPLHLAAIMGHLEIVEVLL 133
Query: 231 QHHAPLDQTDGSHKTPLMIAAQEGHVGLLELL 262
+H A ++ D KT I+ G+ L E+L
Sbjct: 134 KHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 69/138 (50%), Gaps = 8/138 (5%)
Query: 214 LMLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILRED 273
L+ A + G L+ + A ++ TD S TPL +AA GH+ ++E+LL GAD+ D
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAID 77
Query: 274 GEGLTALSWACMRGRIQAVTYLLDRDRGAMIEHVDINGLRPLDRAISCRNVPVVQCFLRK 333
G T L A + G ++ V LL GA + VD G PL A ++ +V+ L+
Sbjct: 78 IXGSTPLHLAALIGHLEIVEVLL--KHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKH 135
Query: 334 GA------KLGPTTWSMA 345
GA K G T + ++
Sbjct: 136 GADVNAQDKFGKTAFDIS 153
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 71.6 bits (174), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 50/152 (32%), Positives = 73/152 (48%), Gaps = 15/152 (9%)
Query: 137 AHEGNSEMIALLLEFHACIDLANSQGRTPLSLAAGRGHMEAVRTLVAAGASLGRTDTTGR 196
A G + + +L+ A ++ ++ G TPL LAA GH+E V L+ GA + D G
Sbjct: 22 ARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIMGS 81
Query: 197 CALVHAARGGHLQNLSPLMLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHV 256
+PL LA GH E LL+H A ++ D TPL +AA GH+
Sbjct: 82 ---------------TPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHL 126
Query: 257 GLLELLLDKGADILREDGEGLTALSWACMRGR 288
++E+LL GAD+ +D G TA + G
Sbjct: 127 EIVEVLLKHGADVNAQDKFGKTAFDISIDNGN 158
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 54/164 (32%), Positives = 76/164 (46%), Gaps = 17/164 (10%)
Query: 169 AAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPLMLAVKEGHWATAEK 228
AA G + VR L+A GA + TD +G L+PL LA GH E
Sbjct: 21 AARAGQDDEVRILMANGADVNATDASG---------------LTPLHLAATYGHLEIVEV 65
Query: 229 LLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILREDGEGLTALSWACMRGR 288
LL+H A ++ D TPL +AA GH+ ++E+LL GAD+ D G T L A + G
Sbjct: 66 LLKHGADVNAIDIMGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGH 125
Query: 289 IQAVTYLLDRDRGAMIEHVDINGLRPLDRAISCRNVPVVQCFLR 332
++ V LL GA + D G D +I N + + +
Sbjct: 126 LEIVEVLL--KHGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 64.7 bits (156), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 75/152 (49%), Gaps = 17/152 (11%)
Query: 111 RLLLLSGADANHITEFLGAAPALCLFAHEGNSEMIALLLEFHACIDLANSQGRTPLSLAA 170
R+L+ +GAD N T+ G P L L A G+ E++ +LL+ A ++ + G TPL LAA
Sbjct: 31 RILMANGADVN-ATDASGLTP-LHLAATYGHLEIVEVLLKHGADVNAIDIMGSTPLHLAA 88
Query: 171 GRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPLMLAVKEGHWATAEKLL 230
GH+E V L+ GA + DT G +PL LA GH E LL
Sbjct: 89 LIGHLEIVEVLLKHGADVNAVDTWGD---------------TPLHLAAIMGHLEIVEVLL 133
Query: 231 QHHAPLDQTDGSHKTPLMIAAQEGHVGLLELL 262
+H A ++ D KT I+ G+ L E+L
Sbjct: 134 KHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 69/138 (50%), Gaps = 8/138 (5%)
Query: 214 LMLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILRED 273
L+ A + G L+ + A ++ TD S TPL +AA GH+ ++E+LL GAD+ D
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAID 77
Query: 274 GEGLTALSWACMRGRIQAVTYLLDRDRGAMIEHVDINGLRPLDRAISCRNVPVVQCFLRK 333
G T L A + G ++ V LL GA + VD G PL A ++ +V+ L+
Sbjct: 78 IMGSTPLHLAALIGHLEIVEVLL--KHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKH 135
Query: 334 GA------KLGPTTWSMA 345
GA K G T + ++
Sbjct: 136 GADVNAQDKFGKTAFDIS 153
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 71.6 bits (174), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 74/152 (48%), Gaps = 15/152 (9%)
Query: 137 AHEGNSEMIALLLEFHACIDLANSQGRTPLSLAAGRGHMEAVRTLVAAGASLGRTDTTGR 196
A G + + +L+ A ++ ++ G TPL LAA GH+E V L+ GA + D G
Sbjct: 22 ARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAG- 80
Query: 197 CALVHAARGGHLQNLSPLMLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHV 256
++PL LA GH E LL++ A ++ D TPL +AA GH+
Sbjct: 81 --------------MTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHL 126
Query: 257 GLLELLLDKGADILREDGEGLTALSWACMRGR 288
++E+LL GAD+ +D G TA + G
Sbjct: 127 EIVEVLLKNGADVNAQDKFGKTAFDISIDNGN 158
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/164 (32%), Positives = 76/164 (46%), Gaps = 17/164 (10%)
Query: 169 AAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPLMLAVKEGHWATAEK 228
AA G + VR L+A GA + D +G +PL LA GH E
Sbjct: 21 AARAGRDDEVRILMANGADVNAEDASG---------------WTPLHLAAFNGHLEIVEV 65
Query: 229 LLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILREDGEGLTALSWACMRGR 288
LL++ A ++ D + TPL +AA GH+ ++E+LL GAD+ D EG T L A M G
Sbjct: 66 LLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGH 125
Query: 289 IQAVTYLLDRDRGAMIEHVDINGLRPLDRAISCRNVPVVQCFLR 332
++ V LL GA + D G D +I N + + +
Sbjct: 126 LEIVEVLL--KNGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 71/152 (46%), Gaps = 17/152 (11%)
Query: 111 RLLLLSGADANHITEFLGAAPALCLFAHEGNSEMIALLLEFHACIDLANSQGRTPLSLAA 170
R+L+ +GAD N E L L A G+ E++ +LL+ A ++ + G TPL LAA
Sbjct: 31 RILMANGADVN--AEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAA 88
Query: 171 GRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPLMLAVKEGHWATAEKLL 230
GH+E V L+ GA + D G +PL LA GH E LL
Sbjct: 89 LFGHLEIVEVLLKNGADVNANDMEGH---------------TPLHLAAMFGHLEIVEVLL 133
Query: 231 QHHAPLDQTDGSHKTPLMIAAQEGHVGLLELL 262
++ A ++ D KT I+ G+ L E+L
Sbjct: 134 KNGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 69/138 (50%), Gaps = 8/138 (5%)
Query: 214 LMLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILRED 273
L+ A + G L+ + A ++ D S TPL +AA GH+ ++E+LL GAD+ D
Sbjct: 18 LLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVD 77
Query: 274 GEGLTALSWACMRGRIQAVTYLLDRDRGAMIEHVDINGLRPLDRAISCRNVPVVQCFLRK 333
G+T L A + G ++ V LL GA + D+ G PL A ++ +V+ L+
Sbjct: 78 HAGMTPLRLAALFGHLEIVEVLL--KNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKN 135
Query: 334 GA------KLGPTTWSMA 345
GA K G T + ++
Sbjct: 136 GADVNAQDKFGKTAFDIS 153
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 60/107 (56%), Gaps = 15/107 (14%)
Query: 161 QGRTPLSLAAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPLMLAVKE 220
GRTPL LAA GH+E V+ L+ AGA + D GR +PL LA +
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGR---------------TPLHLAARN 45
Query: 221 GHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGA 267
GH + LL+ A ++ D + +TPL +AA+ GH+ +++LLL+ GA
Sbjct: 46 GHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/85 (44%), Positives = 51/85 (60%)
Query: 133 LCLFAHEGNSEMIALLLEFHACIDLANSQGRTPLSLAAGRGHMEAVRTLVAAGASLGRTD 192
L L A G+ E++ LLLE A ++ + GRTPL LAA GH+E V+ L+ AGA + D
Sbjct: 6 LHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKD 65
Query: 193 TTGRCALVHAARGGHLQNLSPLMLA 217
GR L AAR GHL+ + L+ A
Sbjct: 66 KNGRTPLHLAARNGHLEVVKLLLEA 90
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 52/86 (60%)
Query: 212 SPLMLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILR 271
+PL LA + GH + LL+ A ++ D + +TPL +AA+ GH+ +++LLL+ GAD+
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA 63
Query: 272 EDGEGLTALSWACMRGRIQAVTYLLD 297
+D G T L A G ++ V LL+
Sbjct: 64 KDKNGRTPLHLAARNGHLEVVKLLLE 89
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 52/92 (56%), Gaps = 2/92 (2%)
Query: 244 KTPLMIAAQEGHVGLLELLLDKGADILREDGEGLTALSWACMRGRIQAVTYLLDRDRGAM 303
+TPL +AA+ GH+ +++LLL+ GAD+ +D G T L A G ++ V LL + GA
Sbjct: 3 RTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL--EAGAD 60
Query: 304 IEHVDINGLRPLDRAISCRNVPVVQCFLRKGA 335
+ D NG PL A ++ VV+ L GA
Sbjct: 61 VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 50/80 (62%), Gaps = 2/80 (2%)
Query: 107 VKVSRLLLLSGADANHITEFLGAAPALCLFAHEGNSEMIALLLEFHACIDLANSQGRTPL 166
++V +LLL +GAD N + G P L L A G+ E++ LLLE A ++ + GRTPL
Sbjct: 15 LEVVKLLLEAGADVN-AKDKNGRTP-LHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPL 72
Query: 167 SLAAGRGHMEAVRTLVAAGA 186
LAA GH+E V+ L+ AGA
Sbjct: 73 HLAARNGHLEVVKLLLEAGA 92
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 70/239 (29%), Positives = 113/239 (47%), Gaps = 11/239 (4%)
Query: 99 LRNVYSPNVKVSRLLLLSGADANHITEFLGAAPALCLFAHEGNSEMIALLLEFHACIDLA 158
++ V + +V + + LL GA+ N E G P L +++ LLL A L
Sbjct: 30 IKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTP-LHNAVQMSREDIVELLLRHGADPVLR 88
Query: 159 NSQGRTPLSLAAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPLMLAV 218
G TP LAA G ++ ++ ++ GA + D G A + AA G ++ L L
Sbjct: 89 KKNGATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLY--- 145
Query: 219 KEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDK-GADILREDGEGL 277
K G + + + G+ T LM AA++GHV +L++LLD+ GAD+ D G
Sbjct: 146 KRGANVNLRRKTKEDQERLRKGGA--TALMDAAEKGHVEVLKILLDEMGADVNACDNMGR 203
Query: 278 TALSWACMR---GRIQAVTYLLDRDRGAMIEHVDINGLRPLDRAISCRNVPVVQCFLRK 333
AL A + ++A+T+LL D GA + G PL A+ +++ +VQ L +
Sbjct: 204 NALIHALLSSDDSDVEAITHLL-LDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQ 261
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 87/196 (44%), Gaps = 36/196 (18%)
Query: 106 NVKVSRLLLLSGADANHITEFLGAAPALCLFAHEGNSEMIALLLEFHACIDLANSQ---- 161
+VK+ +L L GAD N +F G A A G + + L + A ++L
Sbjct: 104 SVKLLKLFLSKGADVNE-CDFYGFT-AFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQ 161
Query: 162 ------GRTPLSLAAGRGHMEAVRTLV-AAGASLGRTDTTGRCALVHAARGG-------- 206
G T L AA +GH+E ++ L+ GA + D GR AL+HA
Sbjct: 162 ERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAI 221
Query: 207 -HL-------------QNLSPLMLAVKEGHWATAEKLL-QHHAPLDQTDGSHKTPLMIAA 251
HL + +PL+LAV++ H ++LL Q H ++ TD KT L++A
Sbjct: 222 THLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAV 281
Query: 252 QEGHVGLLELLLDKGA 267
+ + ELL +GA
Sbjct: 282 ELKLKKIAELLCKRGA 297
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 70/239 (29%), Positives = 113/239 (47%), Gaps = 11/239 (4%)
Query: 99 LRNVYSPNVKVSRLLLLSGADANHITEFLGAAPALCLFAHEGNSEMIALLLEFHACIDLA 158
++ V + +V + + LL GA+ N E G P L +++ LLL A L
Sbjct: 10 IKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTP-LHNAVQMSREDIVELLLRHGADPVLR 68
Query: 159 NSQGRTPLSLAAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPLMLAV 218
G TP LAA G ++ ++ ++ GA + D G A + AA G ++ L L
Sbjct: 69 KKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLY--- 125
Query: 219 KEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDK-GADILREDGEGL 277
K G + + + G+ T LM AA++GHV +L++LLD+ GAD+ D G
Sbjct: 126 KRGANVNLRRKTKEDQERLRKGGA--TALMDAAEKGHVEVLKILLDEMGADVNACDNMGR 183
Query: 278 TALSWACMR---GRIQAVTYLLDRDRGAMIEHVDINGLRPLDRAISCRNVPVVQCFLRK 333
AL A + ++A+T+LL D GA + G PL A+ +++ +VQ L +
Sbjct: 184 NALIHALLSSDDSDVEAITHLL-LDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQ 241
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 61/219 (27%), Positives = 93/219 (42%), Gaps = 36/219 (16%)
Query: 83 HWISSVCQSPAQALCSLRNVYSPNVKVSRLLLLSGADANHITEFLGAAPALCLFAHEGNS 142
H V + A L + +VK+ +L L GAD N +F G A A G
Sbjct: 61 HGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNE-CDFYGF-TAFMEAAVYGKV 118
Query: 143 EMIALLLEFHACIDLANSQ----------GRTPLSLAAGRGHMEAVRTLV-AAGASLGRT 191
+ + L + A ++L G T L AA +GH+E ++ L+ GA +
Sbjct: 119 KALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNAC 178
Query: 192 DTTGRCALVHAARGG---------HL-------------QNLSPLMLAVKEGHWATAEKL 229
D GR AL+HA HL + +PL+LAV++ H ++L
Sbjct: 179 DNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRL 238
Query: 230 L-QHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGA 267
L Q H ++ TD KT L++A + + ELL +GA
Sbjct: 239 LEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGA 277
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 46/128 (35%), Positives = 62/128 (48%), Gaps = 16/128 (12%)
Query: 169 AAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPLMLAVKEGHWATAEK 228
AA G + VR L+A GA TD G SPL LA + GH++T E
Sbjct: 9 AARAGQDDEVRILMANGAPF-TTDWLGT---------------SPLHLAAQYGHFSTTEV 52
Query: 229 LLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILREDGEGLTALSWACMRGR 288
LL+ D +TPL +AA EGH ++E+LL GAD+ +D +TAL WA
Sbjct: 53 LLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNH 112
Query: 289 IQAVTYLL 296
+ V L+
Sbjct: 113 QEVVELLI 120
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 49/108 (45%), Gaps = 15/108 (13%)
Query: 162 GRTPLSLAAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPLMLAVKEG 221
G +PL LAA GH L+ AG S R A R +PL +A EG
Sbjct: 34 GTSPLHLAAQYGHFSTTEVLLRAGVS--------RDARTKVDR-------TPLHMAASEG 78
Query: 222 HWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADI 269
H E LL+H A ++ D T L A + H ++ELL+ GAD+
Sbjct: 79 HANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADV 126
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 63/152 (41%), Gaps = 18/152 (11%)
Query: 111 RLLLLSGADANHITEFLGAAPALCLFAHEGNSEMIALLLEFHACIDLANSQGRTPLSLAA 170
R+L+ +GA T++LG +P L L A G+ +LL D RTPL +AA
Sbjct: 19 RILMANGAP--FTTDWLGTSP-LHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAA 75
Query: 171 GRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPLMLAVKEGHWATAEKLL 230
GH V L+ GA + D + ++ L A + H E L+
Sbjct: 76 SEGHANIVEVLLKHGADVNAKD---------------MLKMTALHWATEHNHQEVVELLI 120
Query: 231 QHHAPLDQTDGSHKTPLMIAAQEGHVGLLELL 262
++ A + KT I+ G+ L E+L
Sbjct: 121 KYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 59/116 (50%), Gaps = 15/116 (12%)
Query: 173 GHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPLMLAVKEGHWATAEKLLQH 232
G + VR L+A GA + D G ++PL LA K GH E LL+H
Sbjct: 25 GQDDEVRILMANGADVNAMDDAG---------------VTPLHLAAKRGHLEIVEVLLKH 69
Query: 233 HAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILREDGEGLTALSWACMRGR 288
A ++ +D +TPL +AA GH+ ++E+LL+ GAD+ +D G TA + G
Sbjct: 70 GADVNASDSWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGN 125
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 59/123 (47%), Gaps = 15/123 (12%)
Query: 140 GNSEMIALLLEFHACIDLANSQGRTPLSLAAGRGHMEAVRTLVAAGASLGRTDTTGRCAL 199
G + + +L+ A ++ + G TPL LAA RGH+E V L+ GA + +D+ GR
Sbjct: 25 GQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWGR--- 81
Query: 200 VHAARGGHLQNLSPLMLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLL 259
+PL LA GH E LL++ A ++ D KT I+ G+ L
Sbjct: 82 ------------TPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLA 129
Query: 260 ELL 262
E+L
Sbjct: 130 EIL 132
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 53/89 (59%), Gaps = 2/89 (2%)
Query: 111 RLLLLSGADANHITEFLGAAPALCLFAHEGNSEMIALLLEFHACIDLANSQGRTPLSLAA 170
R+L+ +GAD N + + G P L L A G+ E++ +LL+ A ++ ++S GRTPL LAA
Sbjct: 31 RILMANGADVNAMDDA-GVTP-LHLAAKRGHLEIVEVLLKHGADVNASDSWGRTPLHLAA 88
Query: 171 GRGHMEAVRTLVAAGASLGRTDTTGRCAL 199
GH+E V L+ GA + D G+ A
Sbjct: 89 TVGHLEIVEVLLEYGADVNAQDKFGKTAF 117
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 57/119 (47%), Gaps = 2/119 (1%)
Query: 214 LMLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILRED 273
L+ A + G L+ + A ++ D + TPL +AA+ GH+ ++E+LL GAD+ D
Sbjct: 18 LLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASD 77
Query: 274 GEGLTALSWACMRGRIQAVTYLLDRDRGAMIEHVDINGLRPLDRAISCRNVPVVQCFLR 332
G T L A G ++ V LL + GA + D G D +I N + + +
Sbjct: 78 SWGRTPLHLAATVGHLEIVEVLL--EYGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Query: 107 VKVSRLLLLSGADANHITEFLGAAPALCLFAHEGNSEMIALLLEFHACIDLANSQGRTPL 166
+++ +LL GAD N ++ G P L L A G+ E++ +LLE+ A ++ + G+T
Sbjct: 60 LEIVEVLLKHGADVN-ASDSWGRTP-LHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAF 117
Query: 167 SLAAGRGHMEAVRTL 181
++ G+ + L
Sbjct: 118 DISIDNGNEDLAEIL 132
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 83/168 (49%), Gaps = 16/168 (9%)
Query: 122 HITEFLGAAPALCLFAHEGNSEMIALLLEFHACIDLANSQGRTPLSLAAGRGHMEAVRTL 181
++T G++P L + A G +++I LLL+ A N+ PL LA +GH + V+ L
Sbjct: 80 NVTSQDGSSP-LHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCL 138
Query: 182 VAAGASLGRTDTTGRCALVHAARGGHLQNLSPLMLAVKEGHWATAEKLLQHHAPLDQTDG 241
+ + A + D +G L++A GGH + ++A+ LLQH A ++ ++
Sbjct: 139 LDSNAKPNKKDLSGNTPLIYACSGGHHE-----LVAL----------LLQHGASINASNN 183
Query: 242 SHKTPLMIAAQEGHVGLLELLLDKGADILREDGEGLTALSWACMRGRI 289
T L A E HV ++ELLL GA + + TA+ A +I
Sbjct: 184 KGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVDCAEQNSKI 231
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 67/142 (47%), Gaps = 15/142 (10%)
Query: 155 IDLANSQGRTPLSLAAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPL 214
+++ + G +PL +AA G + + L+ GA+ G AR PL
Sbjct: 79 VNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAG-------------ARNA--DQAVPL 123
Query: 215 MLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILREDG 274
LA ++GH+ + LL +A ++ D S TPL+ A GH L+ LLL GA I +
Sbjct: 124 HLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNN 183
Query: 275 EGLTALSWACMRGRIQAVTYLL 296
+G TAL A + + V LL
Sbjct: 184 KGNTALHEAVIEKHVFVVELLL 205
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 49/102 (48%), Gaps = 4/102 (3%)
Query: 240 DGSHKTPLMIAAQEGHVGLLELLLDKGADILREDGEGLTALSWACMRGRIQAVTYLLDRD 299
DGS +PL +AA G L+ LLL GA+ + + L AC +G Q V LLD +
Sbjct: 85 DGS--SPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSN 142
Query: 300 RGAMIEHVDINGLRPLDRAISCRNVPVVQCFLRKGAKLGPTT 341
A D++G PL A S + +V L+ GA + +
Sbjct: 143 --AKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASN 182
Score = 36.6 bits (83), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 2/104 (1%)
Query: 108 KVSRLLLLSGADANHITEFLGAAPALCLFAHEGNSEMIALLLEFHACIDLANSQGRTPLS 167
+V + LL S A N + G P L G+ E++ALLL+ A I+ +N++G T L
Sbjct: 133 QVVKCLLDSNAKPNK-KDLSGNTP-LIYACSGGHHELVALLLQHGASINASNNKGNTALH 190
Query: 168 LAAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNL 211
A H+ V L+ GAS+ + R A+ A + + L
Sbjct: 191 EAVIEKHVFVVELLLLHGASVQVLNKRQRTAVDCAEQNSKIMEL 234
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 59/116 (50%), Gaps = 15/116 (12%)
Query: 173 GHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPLMLAVKEGHWATAEKLLQH 232
G + VR L+A GA + D G ++PL LA K GH E LL+H
Sbjct: 25 GQDDEVRILMANGADVNAMDDAG---------------VTPLHLAAKRGHLEIVEVLLKH 69
Query: 233 HAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILREDGEGLTALSWACMRGR 288
A ++ +D +TPL +AA GH+ ++E+LL+ GAD+ +D G TA + G
Sbjct: 70 GADVNASDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGN 125
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 58/123 (47%), Gaps = 15/123 (12%)
Query: 140 GNSEMIALLLEFHACIDLANSQGRTPLSLAAGRGHMEAVRTLVAAGASLGRTDTTGRCAL 199
G + + +L+ A ++ + G TPL LAA RGH+E V L+ GA + +D GR
Sbjct: 25 GQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWGR--- 81
Query: 200 VHAARGGHLQNLSPLMLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLL 259
+PL LA GH E LL++ A ++ D KT I+ G+ L
Sbjct: 82 ------------TPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLA 129
Query: 260 ELL 262
E+L
Sbjct: 130 EIL 132
Score = 54.7 bits (130), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 52/89 (58%), Gaps = 2/89 (2%)
Query: 111 RLLLLSGADANHITEFLGAAPALCLFAHEGNSEMIALLLEFHACIDLANSQGRTPLSLAA 170
R+L+ +GAD N + + G P L L A G+ E++ +LL+ A ++ ++ GRTPL LAA
Sbjct: 31 RILMANGADVNAMDDA-GVTP-LHLAAKRGHLEIVEVLLKHGADVNASDIWGRTPLHLAA 88
Query: 171 GRGHMEAVRTLVAAGASLGRTDTTGRCAL 199
GH+E V L+ GA + D G+ A
Sbjct: 89 TVGHLEIVEVLLEYGADVNAQDKFGKTAF 117
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 57/121 (47%), Gaps = 2/121 (1%)
Query: 212 SPLMLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILR 271
L+ A + G L+ + A ++ D + TPL +AA+ GH+ ++E+LL GAD+
Sbjct: 16 KKLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNA 75
Query: 272 EDGEGLTALSWACMRGRIQAVTYLLDRDRGAMIEHVDINGLRPLDRAISCRNVPVVQCFL 331
D G T L A G ++ V LL + GA + D G D +I N + +
Sbjct: 76 SDIWGRTPLHLAATVGHLEIVEVLL--EYGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 133
Query: 332 R 332
+
Sbjct: 134 K 134
Score = 31.2 bits (69), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Query: 107 VKVSRLLLLSGADANHITEFLGAAPALCLFAHEGNSEMIALLLEFHACIDLANSQGRTPL 166
+++ +LL GAD N ++ G P L L A G+ E++ +LLE+ A ++ + G+T
Sbjct: 60 LEIVEVLLKHGADVN-ASDIWGRTP-LHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAF 117
Query: 167 SLAAGRGHMEAVRTL 181
++ G+ + L
Sbjct: 118 DISIDNGNEDLAEIL 132
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 58/115 (50%), Gaps = 15/115 (13%)
Query: 173 GHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPLMLAVKEGHWATAEKLLQH 232
G + VR L+A GA + D G ++PL LA K GH E LL+H
Sbjct: 25 GQDDEVRILMANGADVNAMDDAG---------------VTPLHLAAKRGHLEIVEVLLKH 69
Query: 233 HAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILREDGEGLTALSWACMRG 287
A ++ D +TPL +AA GH+ ++E+LL+ GAD+ +D G TA + G
Sbjct: 70 GADVNARDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNG 124
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 57/123 (46%), Gaps = 15/123 (12%)
Query: 140 GNSEMIALLLEFHACIDLANSQGRTPLSLAAGRGHMEAVRTLVAAGASLGRTDTTGRCAL 199
G + + +L+ A ++ + G TPL LAA RGH+E V L+ GA + D GR
Sbjct: 25 GQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWGR--- 81
Query: 200 VHAARGGHLQNLSPLMLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLL 259
+PL LA GH E LL++ A ++ D KT I+ G+ L
Sbjct: 82 ------------TPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLA 129
Query: 260 ELL 262
E+L
Sbjct: 130 EIL 132
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 51/89 (57%), Gaps = 2/89 (2%)
Query: 111 RLLLLSGADANHITEFLGAAPALCLFAHEGNSEMIALLLEFHACIDLANSQGRTPLSLAA 170
R+L+ +GAD N + + G P L L A G+ E++ +LL+ A ++ + GRTPL LAA
Sbjct: 31 RILMANGADVNAMDDA-GVTP-LHLAAKRGHLEIVEVLLKHGADVNARDIWGRTPLHLAA 88
Query: 171 GRGHMEAVRTLVAAGASLGRTDTTGRCAL 199
GH+E V L+ GA + D G+ A
Sbjct: 89 TVGHLEIVEVLLEYGADVNAQDKFGKTAF 117
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 57/121 (47%), Gaps = 2/121 (1%)
Query: 212 SPLMLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILR 271
L+ A + G L+ + A ++ D + TPL +AA+ GH+ ++E+LL GAD+
Sbjct: 16 KKLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNA 75
Query: 272 EDGEGLTALSWACMRGRIQAVTYLLDRDRGAMIEHVDINGLRPLDRAISCRNVPVVQCFL 331
D G T L A G ++ V LL + GA + D G D +I N + +
Sbjct: 76 RDIWGRTPLHLAATVGHLEIVEVLL--EYGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 133
Query: 332 R 332
+
Sbjct: 134 K 134
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Query: 107 VKVSRLLLLSGADANHITEFLGAAPALCLFAHEGNSEMIALLLEFHACIDLANSQGRTPL 166
+++ +LL GAD N + G P L L A G+ E++ +LLE+ A ++ + G+T
Sbjct: 60 LEIVEVLLKHGADVN-ARDIWGRTP-LHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAF 117
Query: 167 SLAAGRGHMEAVRTL 181
++ G+ + L
Sbjct: 118 DISIDNGNEDLAEIL 132
>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein
pdb|2RFM|B Chain B, Structure Of A Thermophilic Ankyrin Repeat Protein
Length = 192
Score = 58.2 bits (139), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 71/152 (46%), Gaps = 18/152 (11%)
Query: 159 NSQGRTPLSLAAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHL---------- 208
+S RTPL +A G A+ LV L D G AL+ A + L
Sbjct: 32 DSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKG 91
Query: 209 --------QNLSPLMLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLE 260
+PLM ++ G+ + LL+H A ++ + +TPL++A++ G +++
Sbjct: 92 SNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVK 151
Query: 261 LLLDKGADILREDGEGLTALSWACMRGRIQAV 292
LL+ GADI D GLTA + A + GR + +
Sbjct: 152 KLLELGADISARDLTGLTAEASARIFGRQEVI 183
Score = 54.7 bits (130), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 63/128 (49%), Gaps = 2/128 (1%)
Query: 210 NLSPLMLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADI 269
N +PLM+A G +KL+++ L+ D T L+ A + +G+ E LL KG+++
Sbjct: 35 NRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNV 94
Query: 270 LREDGEGLTALSWACMRGRIQAVTYLLDRDRGAMIEHVDINGLRPLDRAISCRNVPVVQC 329
+D G T L W+ + G + +LL + GA + ++ G PL A +V+
Sbjct: 95 NTKDFSGKTPLMWSIIFGYSEMSYFLL--EHGANVNDRNLEGETPLIVASKYGRSEIVKK 152
Query: 330 FLRKGAKL 337
L GA +
Sbjct: 153 LLELGADI 160
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 46/94 (48%), Gaps = 2/94 (2%)
Query: 109 VSRLLLLSGADANHITEFLGAAPALCLFAHEGNSEMIALLLEFHACIDLANSQGRTPLSL 168
++ LL G++ N +F G P + G SEM LLE A ++ N +G TPL +
Sbjct: 83 IAEKLLSKGSNVN-TKDFSGKTPLMWSIIF-GYSEMSYFLLEHGANVNDRNLEGETPLIV 140
Query: 169 AAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHA 202
A+ G E V+ L+ GA + D TG A A
Sbjct: 141 ASKYGRSEIVKKLLELGADISARDLTGLTAEASA 174
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 58/120 (48%), Gaps = 15/120 (12%)
Query: 169 AAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPLMLAVKEGHWATAEK 228
AA G + VR L+A GA + D G L+PL LA + GH E
Sbjct: 21 AARAGQDDEVRILMANGADVNALDEDG---------------LTPLHLAAQLGHLEIVEV 65
Query: 229 LLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILREDGEGLTALSWACMRGR 288
LL++ A ++ D TPL +AA GH+ ++E+LL GAD+ +D G TA + G
Sbjct: 66 LLKYGADVNAEDNFGITPLHLAAIRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGN 125
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 53/89 (59%), Gaps = 2/89 (2%)
Query: 111 RLLLLSGADANHITEFLGAAPALCLFAHEGNSEMIALLLEFHACIDLANSQGRTPLSLAA 170
R+L+ +GAD N + E G P L L A G+ E++ +LL++ A ++ ++ G TPL LAA
Sbjct: 31 RILMANGADVNALDED-GLTP-LHLAAQLGHLEIVEVLLKYGADVNAEDNFGITPLHLAA 88
Query: 171 GRGHMEAVRTLVAAGASLGRTDTTGRCAL 199
RGH+E V L+ GA + D G+ A
Sbjct: 89 IRGHLEIVEVLLKHGADVNAQDKFGKTAF 117
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 57/126 (45%), Gaps = 15/126 (11%)
Query: 137 AHEGNSEMIALLLEFHACIDLANSQGRTPLSLAAGRGHMEAVRTLVAAGASLGRTDTTGR 196
A G + + +L+ A ++ + G TPL LAA GH+E V L+ GA + D G
Sbjct: 22 ARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAEDNFG- 80
Query: 197 CALVHAARGGHLQNLSPLMLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHV 256
++PL LA GH E LL+H A ++ D KT I+ G+
Sbjct: 81 --------------ITPLHLAAIRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNE 126
Query: 257 GLLELL 262
L E+L
Sbjct: 127 DLAEIL 132
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 59/121 (48%), Gaps = 2/121 (1%)
Query: 212 SPLMLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILR 271
L+ A + G L+ + A ++ D TPL +AAQ GH+ ++E+LL GAD+
Sbjct: 16 KKLLEAARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNA 75
Query: 272 EDGEGLTALSWACMRGRIQAVTYLLDRDRGAMIEHVDINGLRPLDRAISCRNVPVVQCFL 331
ED G+T L A +RG ++ V LL GA + D G D +I N + +
Sbjct: 76 EDNFGITPLHLAAIRGHLEIVEVLL--KHGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 133
Query: 332 R 332
+
Sbjct: 134 K 134
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 55/120 (45%), Gaps = 15/120 (12%)
Query: 169 AAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPLMLAVKEGHWATAEK 228
AA G + VR L+A GA + D G +PL LA H E
Sbjct: 21 AARAGQDDEVRILMANGADVNANDRKGN---------------TPLHLAADYDHLEIVEV 65
Query: 229 LLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILREDGEGLTALSWACMRGR 288
LL+H A ++ D TPL +AA GH+ ++E+LL GAD+ +D G TA + G
Sbjct: 66 LLKHGADVNAHDNDGSTPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGN 125
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 56/126 (44%), Gaps = 15/126 (11%)
Query: 137 AHEGNSEMIALLLEFHACIDLANSQGRTPLSLAAGRGHMEAVRTLVAAGASLGRTDTTGR 196
A G + + +L+ A ++ + +G TPL LAA H+E V L+ GA + D G
Sbjct: 22 ARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDNDGS 81
Query: 197 CALVHAARGGHLQNLSPLMLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHV 256
+PL LA GH E LL+H A ++ D KT I+ G+
Sbjct: 82 ---------------TPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNE 126
Query: 257 GLLELL 262
L E+L
Sbjct: 127 DLAEIL 132
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 49/89 (55%), Gaps = 2/89 (2%)
Query: 111 RLLLLSGADANHITEFLGAAPALCLFAHEGNSEMIALLLEFHACIDLANSQGRTPLSLAA 170
R+L+ +GAD N + G P L L A + E++ +LL+ A ++ ++ G TPL LAA
Sbjct: 31 RILMANGADVN-ANDRKGNTP-LHLAADYDHLEIVEVLLKHGADVNAHDNDGSTPLHLAA 88
Query: 171 GRGHMEAVRTLVAAGASLGRTDTTGRCAL 199
GH+E V L+ GA + D G+ A
Sbjct: 89 LFGHLEIVEVLLKHGADVNAQDKFGKTAF 117
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 55/119 (46%), Gaps = 2/119 (1%)
Query: 214 LMLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILRED 273
L+ A + G L+ + A ++ D TPL +AA H+ ++E+LL GAD+ D
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHD 77
Query: 274 GEGLTALSWACMRGRIQAVTYLLDRDRGAMIEHVDINGLRPLDRAISCRNVPVVQCFLR 332
+G T L A + G ++ V LL GA + D G D +I N + + +
Sbjct: 78 NDGSTPLHLAALFGHLEIVEVLL--KHGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures
pdb|2MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, Minimized Average
Structure
pdb|2KXP|C Chain C, Solution Nmr Structure Of V-1 Bound To Capping Protein
(Cp)
Length = 118
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/113 (37%), Positives = 55/113 (48%), Gaps = 15/113 (13%)
Query: 169 AAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPLMLAVKEGHWATAEK 228
A G ++ V+ VA G + RT GR L +AA G L+ L E
Sbjct: 9 ALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEIL---------------EF 53
Query: 229 LLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILREDGEGLTALS 281
LL A ++ D H TPL+ A EGHV ++LLL KGAD + +GLTAL
Sbjct: 54 LLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTALE 106
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 39/85 (45%)
Query: 214 LMLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILRED 273
M A+K G + + +++T + PL AA G + +LE LL KGADI D
Sbjct: 6 FMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPD 65
Query: 274 GEGLTALSWACMRGRIQAVTYLLDR 298
+T L A G + V LL +
Sbjct: 66 KHHITPLLSAVYEGHVSCVKLLLSK 90
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 2/89 (2%)
Query: 247 LMIAAQEGHVGLLELLLDKGADILREDGEGLTALSWACMRGRIQAVTYLLDRDRGAMIEH 306
M A + G + ++ + KG D+ R G L +A G+++ + +LL + GA I
Sbjct: 6 FMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLK--GADINA 63
Query: 307 VDINGLRPLDRAISCRNVPVVQCFLRKGA 335
D + + PL A+ +V V+ L KGA
Sbjct: 64 PDKHHITPLLSAVYEGHVSCVKLLLSKGA 92
Score = 28.5 bits (62), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 34/84 (40%), Gaps = 2/84 (2%)
Query: 116 SGADANHITEFLGAAPALCLFAHEGNSEMIALLLEFHACIDLANSQGRTPLSLAAGRGHM 175
G D N E G L A G E++ LL A I+ + TPL A GH+
Sbjct: 24 KGEDVNRTLE--GGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHV 81
Query: 176 EAVRTLVAAGASLGRTDTTGRCAL 199
V+ L++ GA G AL
Sbjct: 82 SCVKLLLSKGADKTVKGPDGLTAL 105
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 56/120 (46%), Gaps = 15/120 (12%)
Query: 169 AAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPLMLAVKEGHWATAEK 228
AA G + VR L+A GA + D G L+PL LA GH E
Sbjct: 21 AARAGQDDEVRILMANGADVNAKDEYG---------------LTPLYLATAHGHLEIVEV 65
Query: 229 LLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILREDGEGLTALSWACMRGR 288
LL++ A ++ D TPL +AA GH+ + E+LL GAD+ +D G TA + G
Sbjct: 66 LLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGN 125
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 56/126 (44%), Gaps = 15/126 (11%)
Query: 137 AHEGNSEMIALLLEFHACIDLANSQGRTPLSLAAGRGHMEAVRTLVAAGASLGRTDTTGR 196
A G + + +L+ A ++ + G TPL LA GH+E V L+ GA + D G
Sbjct: 22 ARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIG- 80
Query: 197 CALVHAARGGHLQNLSPLMLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHV 256
+PL LA GH AE LL+H A ++ D KT I+ G+
Sbjct: 81 --------------FTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNE 126
Query: 257 GLLELL 262
L E+L
Sbjct: 127 DLAEIL 132
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 49/89 (55%), Gaps = 2/89 (2%)
Query: 111 RLLLLSGADANHITEFLGAAPALCLFAHEGNSEMIALLLEFHACIDLANSQGRTPLSLAA 170
R+L+ +GAD N E+ G P AH G+ E++ +LL+ A ++ ++ G TPL LAA
Sbjct: 31 RILMANGADVNAKDEY-GLTPLYLATAH-GHLEIVEVLLKNGADVNAVDAIGFTPLHLAA 88
Query: 171 GRGHMEAVRTLVAAGASLGRTDTTGRCAL 199
GH+E L+ GA + D G+ A
Sbjct: 89 FIGHLEIAEVLLKHGADVNAQDKFGKTAF 117
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 52/121 (42%), Gaps = 2/121 (1%)
Query: 212 SPLMLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILR 271
L+ A + G L+ + A ++ D TPL +A GH+ ++E+LL GAD+
Sbjct: 16 KKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNA 75
Query: 272 EDGEGLTALSWACMRGRIQAVTYLLDRDRGAMIEHVDINGLRPLDRAISCRNVPVVQCFL 331
D G T L A G ++ LL GA + D G D +I N + +
Sbjct: 76 VDAIGFTPLHLAAFIGHLEIAEVLL--KHGADVNAQDKFGKTAFDISIGNGNEDLAEILQ 133
Query: 332 R 332
+
Sbjct: 134 K 134
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 41/75 (54%), Gaps = 2/75 (2%)
Query: 107 VKVSRLLLLSGADANHITEFLGAAPALCLFAHEGNSEMIALLLEFHACIDLANSQGRTPL 166
+++ +LL +GAD N + + +G P L L A G+ E+ +LL+ A ++ + G+T
Sbjct: 60 LEIVEVLLKNGADVNAV-DAIGFTP-LHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAF 117
Query: 167 SLAAGRGHMEAVRTL 181
++ G G+ + L
Sbjct: 118 DISIGNGNEDLAEIL 132
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 56/120 (46%), Gaps = 15/120 (12%)
Query: 169 AAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPLMLAVKEGHWATAEK 228
AA G + VR L+A GA + D G L+PL LA H E
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDKVG---------------LTPLHLAAMNDHLEIVEV 65
Query: 229 LLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILREDGEGLTALSWACMRGR 288
LL++ A ++ D +TPL + A GH+ ++E+LL GAD+ +D G TA + G
Sbjct: 66 LLKNGADVNAIDAIGETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGN 125
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 54/126 (42%), Gaps = 15/126 (11%)
Query: 137 AHEGNSEMIALLLEFHACIDLANSQGRTPLSLAAGRGHMEAVRTLVAAGASLGRTDTTGR 196
A G + + +L+ A ++ + G TPL LAA H+E V L+ GA + D G
Sbjct: 22 ARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAIGE 81
Query: 197 CALVHAARGGHLQNLSPLMLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHV 256
+PL L GH E LL+H A ++ D KT I+ G+
Sbjct: 82 ---------------TPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNE 126
Query: 257 GLLELL 262
L E+L
Sbjct: 127 DLAEIL 132
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 49/89 (55%), Gaps = 2/89 (2%)
Query: 111 RLLLLSGADANHITEFLGAAPALCLFAHEGNSEMIALLLEFHACIDLANSQGRTPLSLAA 170
R+L+ +GAD N + +G P L L A + E++ +LL+ A ++ ++ G TPL L A
Sbjct: 31 RILMANGADVN-AEDKVGLTP-LHLAAMNDHLEIVEVLLKNGADVNAIDAIGETPLHLVA 88
Query: 171 GRGHMEAVRTLVAAGASLGRTDTTGRCAL 199
GH+E V L+ GA + D G+ A
Sbjct: 89 MYGHLEIVEVLLKHGADVNAQDKFGKTAF 117
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 53/121 (43%), Gaps = 2/121 (1%)
Query: 212 SPLMLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILR 271
L+ A + G L+ + A ++ D TPL +AA H+ ++E+LL GAD+
Sbjct: 16 KKLLEAARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNA 75
Query: 272 EDGEGLTALSWACMRGRIQAVTYLLDRDRGAMIEHVDINGLRPLDRAISCRNVPVVQCFL 331
D G T L M G ++ V LL GA + D G D +I N + +
Sbjct: 76 IDAIGETPLHLVAMYGHLEIVEVLL--KHGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 133
Query: 332 R 332
+
Sbjct: 134 K 134
>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With
V-1
Length = 123
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/113 (36%), Positives = 54/113 (47%), Gaps = 15/113 (13%)
Query: 169 AAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPLMLAVKEGHWATAEK 228
A G ++ V+ VA G + RT GR L +AA G L+ L E
Sbjct: 14 ALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEIL---------------EF 58
Query: 229 LLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILREDGEGLTALS 281
LL A ++ D H TPL+ A EGHV ++LLL KGAD + +GLTA
Sbjct: 59 LLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFE 111
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 39/85 (45%)
Query: 214 LMLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILRED 273
M A+K G + + +++T + PL AA G + +LE LL KGADI D
Sbjct: 11 FMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPD 70
Query: 274 GEGLTALSWACMRGRIQAVTYLLDR 298
+T L A G + V LL +
Sbjct: 71 KHHITPLLSAVYEGHVSCVKLLLSK 95
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 2/89 (2%)
Query: 247 LMIAAQEGHVGLLELLLDKGADILREDGEGLTALSWACMRGRIQAVTYLLDRDRGAMIEH 306
M A + G + ++ + KG D+ R G L +A G+++ + +LL + GA I
Sbjct: 11 FMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLK--GADINA 68
Query: 307 VDINGLRPLDRAISCRNVPVVQCFLRKGA 335
D + + PL A+ +V V+ L KGA
Sbjct: 69 PDKHHITPLLSAVYEGHVSCVKLLLSKGA 97
Score = 28.1 bits (61), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
Query: 116 SGADANHITEFLGAAPALCLFAHEGNSEMIALLLEFHACIDLANSQGRTPLSLAAGRGHM 175
G D N E G L A G E++ LL A I+ + TPL A GH+
Sbjct: 29 KGEDVNRTLE--GGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHV 86
Query: 176 EAVRTLVAAGAS 187
V+ L++ GA
Sbjct: 87 SCVKLLLSKGAD 98
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 53/113 (46%), Gaps = 6/113 (5%)
Query: 227 EKLLQHHAPLD----QTDGSHKTPLMIAAQEGHVGLLELLLDKGADILREDGEGLTALSW 282
EKL+ PL+ +DG TPL +AA V +++LLL GAD+ +D GL L
Sbjct: 38 EKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHN 97
Query: 283 ACMRGRIQAVTYLLDRDRGAMIEHVDINGLRPLDRAISCRNVPVVQCFLRKGA 335
AC G + LL GA + +D+ PL A S V V L GA
Sbjct: 98 ACSYGHYEVTELLL--KHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGA 148
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 63/234 (26%), Positives = 95/234 (40%), Gaps = 48/234 (20%)
Query: 107 VKVSRLLLLSGADANHITEFLGAAP--ALCLFAHEGNSEMIALLLEFHACIDLANSQGRT 164
V++ +LLL GAD H + G P C + H E+ LLL+ AC++ + T
Sbjct: 71 VRIVQLLLQHGADV-HAKDKGGLVPLHNACSYGH---YEVTELLLKHGACVNAMDLWQFT 126
Query: 165 PLSLAAGRGHMEAVRTLVAAGASLGRTDTTGRCA---------------------LVHAA 203
PL AA + +E L++ GA + G+ A L+ AA
Sbjct: 127 PLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAA 186
Query: 204 RGGHLQNL------------------SPLMLAVKEGH---WATAEKLLQHHAPLDQTDGS 242
R L + + L AV H AE LL+ A +++ +
Sbjct: 187 READLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKD 246
Query: 243 HKTPLMIAAQEGHVGLLELLLDKGADILREDGEGLTALSWACMRGRIQAVTYLL 296
TPL +AA+ H ++E+L GA + D G TAL A + G +Q LL
Sbjct: 247 FMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLL 300
Score = 32.3 bits (72), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 55/99 (55%), Gaps = 5/99 (5%)
Query: 90 QSPAQAL-CSLRNVYSPNVKVSRLLLLSGADANHIT-EFLGAAPALCLFAHEGNSEMIAL 147
QS AL C++ +++ +V+ LLL GA+ N +F+ L + A +++++ +
Sbjct: 209 QSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFM---TPLHVAAERAHNDVMEV 265
Query: 148 LLEFHACIDLANSQGRTPLSLAAGRGHMEAVRTLVAAGA 186
L + A ++ +S G+T L AA GH++ R L++ G+
Sbjct: 266 LHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGS 304
Score = 32.0 bits (71), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 34/69 (49%)
Query: 211 LSPLMLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADIL 270
++PL +A + H E L +H A ++ D +T L AA GH+ LLL G+D
Sbjct: 248 MTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPS 307
Query: 271 REDGEGLTA 279
+G TA
Sbjct: 308 IISLQGFTA 316
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 81/185 (43%), Gaps = 26/185 (14%)
Query: 159 NSQGRTPLSLAAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPLMLAV 218
+ + T L AA ++ V+ ++ GA + + GG L N +PL A
Sbjct: 39 DKENVTLLHWAAINNRIDLVKYYISKGAIVDQL-------------GGDL-NSTPLHWAT 84
Query: 219 KEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILREDGEGLT 278
++GH + +L+++ A DG + + +AAQ GH ++ L+ KG D+ D G+T
Sbjct: 85 RQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMT 144
Query: 279 ALSWACMRGRIQAVTYLLDRDRGAMIEHVDIN------GLRPLDRAISCRNVPVVQCFLR 332
L WA R T+ +D R + +V +N L A+ N V+ L
Sbjct: 145 PLMWAAYR------THSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLE 198
Query: 333 KGAKL 337
GA +
Sbjct: 199 AGANV 203
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 85/191 (44%), Gaps = 18/191 (9%)
Query: 107 VKVSRLLLLSGADANHITEFLGAAPALCLFAHEGNSEMIALLLEFHACIDLANSQGRTPL 166
+ + + + GA + + L + P L +G+ M+ L+++ A L + +G + +
Sbjct: 55 IDLVKYYISKGAIVDQLGGDLNSTP-LHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCI 113
Query: 167 SLAAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPLMLAVKEGHWATA 226
LAA GH V L+A G + D G ++PLM A H
Sbjct: 114 HLAAQFGHTSIVAYLIAKGQDVDMMDQNG---------------MTPLMWAAYRTHSVDP 158
Query: 227 EK-LLQHHAPLDQTDGSHK-TPLMIAAQEGHVGLLELLLDKGADILREDGEGLTALSWAC 284
+ LL + ++ D HK T L A G+ ++ LLL+ GA++ ++ +G +AL A
Sbjct: 159 TRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAK 218
Query: 285 MRGRIQAVTYL 295
R + + +L
Sbjct: 219 QRKNVWMINHL 229
Score = 32.0 bits (71), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Query: 106 NVKVSRLLLLSGADANHITEFLGAAPALCLFAHEGNSEMIALLLEFHACIDLANSQGRTP 165
+V +RLLL N + + AL GN+ +I+LLLE A +D N +G +
Sbjct: 155 SVDPTRLLLTFNVSVN-LGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESA 213
Query: 166 LSLAAGRGHMEAVRTLVAAGASLG 189
L LA R ++ + L A + G
Sbjct: 214 LDLAKQRKNVWMINHLQEARQAKG 237
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 61/133 (45%), Gaps = 6/133 (4%)
Query: 206 GHLQNLSPLMLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDK 265
G SPL A +EG A E L+ A ++ + TPL +AA GH +++ LL
Sbjct: 35 GDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQY 94
Query: 266 GADILREDGEGLTALSWACMRGRIQAVTYLLDRDRGAMIEHVDINGLRPLDRAISCRNVP 325
ADI + G L +AC G+ Q L+ GA++ + G P+D+A P
Sbjct: 95 KADINAVNEHGNVPLHYACFWGQDQVAEDLV--ANGALVSICNKYGEMPVDKA----KAP 148
Query: 326 VVQCFLRKGAKLG 338
+ + + K+G
Sbjct: 149 LRELLRERAEKMG 161
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Query: 109 VSRLLLLSGADANHITEFLGAAPALCLFAHEGNSEMIALLLEFHACIDLANSQGRTPLSL 168
V +L++ GA N + G L L A G+ +++ LL++ A I+ N G PL
Sbjct: 54 VVEMLIMRGARINVMNR--GDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHY 111
Query: 169 AAGRGHMEAVRTLVAAGA 186
A G + LVA GA
Sbjct: 112 ACFWGQDQVAEDLVANGA 129
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 35/71 (49%)
Query: 139 EGNSEMIALLLEFHACIDLANSQGRTPLSLAAGRGHMEAVRTLVAAGASLGRTDTTGRCA 198
EG S ++ +L+ A I++ N TPL LAA GH + V+ L+ A + + G
Sbjct: 49 EGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVP 108
Query: 199 LVHAARGGHLQ 209
L +A G Q
Sbjct: 109 LHYACFWGQDQ 119
Score = 34.7 bits (78), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 51/118 (43%), Gaps = 11/118 (9%)
Query: 247 LMIAAQEGHVGLLELLLDKGADILRE-DGEGLTALSWACMRGRIQAVTYLLDRDRGAMIE 305
+ +EG+ + L LD + L + D G + L WAC GR V L+ RGA I
Sbjct: 9 IFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLI--MRGARIN 66
Query: 306 HVDINGLRPLDRAISCRNVPVVQCFLRKGAKLG--------PTTWSMAAGKPEVMENF 355
++ PL A S + +VQ L+ A + P ++ G+ +V E+
Sbjct: 67 VMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDL 124
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 61/133 (45%), Gaps = 6/133 (4%)
Query: 206 GHLQNLSPLMLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDK 265
G SPL A +EG A E L+ A ++ + TPL +AA GH +++ LL
Sbjct: 30 GDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQY 89
Query: 266 GADILREDGEGLTALSWACMRGRIQAVTYLLDRDRGAMIEHVDINGLRPLDRAISCRNVP 325
ADI + G L +AC G+ Q L+ GA++ + G P+D+A P
Sbjct: 90 KADINAVNEHGNVPLHYACFWGQDQVAEDLV--ANGALVSICNKYGEMPVDKA----KAP 143
Query: 326 VVQCFLRKGAKLG 338
+ + + K+G
Sbjct: 144 LRELLRERAEKMG 156
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 2/87 (2%)
Query: 109 VSRLLLLSGADANHITEFLGAAPALCLFAHEGNSEMIALLLEFHACIDLANSQGRTPLSL 168
V +L++ GA N + G L L A G+ +++ LL++ A I+ N G PL
Sbjct: 49 VVEMLIMRGARINVMNR--GDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHY 106
Query: 169 AAGRGHMEAVRTLVAAGASLGRTDTTG 195
A G + LVA GA + + G
Sbjct: 107 ACFWGQDQVAEDLVANGALVSICNKYG 133
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 35/71 (49%)
Query: 139 EGNSEMIALLLEFHACIDLANSQGRTPLSLAAGRGHMEAVRTLVAAGASLGRTDTTGRCA 198
EG S ++ +L+ A I++ N TPL LAA GH + V+ L+ A + + G
Sbjct: 44 EGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVP 103
Query: 199 LVHAARGGHLQ 209
L +A G Q
Sbjct: 104 LHYACFWGQDQ 114
Score = 34.7 bits (78), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 51/118 (43%), Gaps = 11/118 (9%)
Query: 247 LMIAAQEGHVGLLELLLDKGADILRE-DGEGLTALSWACMRGRIQAVTYLLDRDRGAMIE 305
+ +EG+ + L LD + L + D G + L WAC GR V L+ RGA I
Sbjct: 4 IFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLI--MRGARIN 61
Query: 306 HVDINGLRPLDRAISCRNVPVVQCFLRKGAKLG--------PTTWSMAAGKPEVMENF 355
++ PL A S + +VQ L+ A + P ++ G+ +V E+
Sbjct: 62 VMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDL 119
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 65/147 (44%), Gaps = 18/147 (12%)
Query: 137 AHEGNSEMIALLLEFHA--CIDLANSQGRTPLSLAAGRGHMEAVRTLVAAGASLGRTDTT 194
A G+ E + L + C D+ Q TPL AAG + V L+ GA + D
Sbjct: 16 AKAGDVETVKKLCTVQSVNCRDIEGRQS-TPLHFAAGYNRVSVVEYLLQHGADVHAKDKG 74
Query: 195 GRCALVHAARGGHLQNLSPLMLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEG 254
G L PL A GH+ AE L++H A ++ D TPL AA +G
Sbjct: 75 G---------------LVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKG 119
Query: 255 HVGLLELLLDKGADILREDGEGLTALS 281
+ +LLL GAD +++ +G T L
Sbjct: 120 KYEICKLLLQHGADPTKKNRDGNTPLD 146
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 57/137 (41%), Gaps = 5/137 (3%)
Query: 214 LMLAVKEGHWATAEKLLQ-HHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILRE 272
L+ A K G T +KL +G TPL AA V ++E LL GAD+ +
Sbjct: 12 LLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAK 71
Query: 273 DGEGLTALSWACMRGRIQAVTYLLDRDRGAMIEHVDINGLRPLDRAISCRNVPVVQCFLR 332
D GL L AC G + L+ GA++ D+ PL A + + + L+
Sbjct: 72 DKGGLVPLHNACSYGHYEVAELLV--KHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQ 129
Query: 333 KGAKLGPTTWSMAAGKP 349
GA PT + P
Sbjct: 130 HGAD--PTKKNRDGNTP 144
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 63/160 (39%), Gaps = 16/160 (10%)
Query: 157 LANSQGRTPLSLAAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPLML 216
+ NS+ L AA G +E V+ L S+ D GR + +PL
Sbjct: 3 MGNSEADRQLLEAAKAGDVETVKKLCTV-QSVNCRDIEGRQS-------------TPLHF 48
Query: 217 AVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILREDGEG 276
A + E LLQH A + D PL A GH + ELL+ GA + D
Sbjct: 49 AAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWK 108
Query: 277 LTALSWACMRGRIQAVTYLLDRDRGAMIEHVDINGLRPLD 316
T L A +G+ + LL GA + +G PLD
Sbjct: 109 FTPLHEAAAKGKYEICKLLL--QHGADPTKKNRDGNTPLD 146
Score = 34.7 bits (78), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 48/119 (40%), Gaps = 16/119 (13%)
Query: 144 MIALLLEFHACIDLANSQGRTPLSLAAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHAA 203
++ LL+ A + + G PL A GH E LV GA + D
Sbjct: 57 VVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVAD----------- 105
Query: 204 RGGHLQNLSPLMLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELL 262
L +PL A +G + + LLQH A + + TPL + ++G + +LL
Sbjct: 106 ----LWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDL-VKDGDTDIQDLL 159
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 65/147 (44%), Gaps = 18/147 (12%)
Query: 137 AHEGNSEMIALLLEFHA--CIDLANSQGRTPLSLAAGRGHMEAVRTLVAAGASLGRTDTT 194
A G+ E + L + C D+ Q TPL AAG + V L+ GA + D
Sbjct: 18 AKAGDVETVKKLCTVQSVNCRDIEGRQ-STPLHFAAGYNRVSVVEYLLQHGADVHAKDKG 76
Query: 195 GRCALVHAARGGHLQNLSPLMLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEG 254
G L PL A GH+ AE L++H A ++ D TPL AA +G
Sbjct: 77 G---------------LVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKG 121
Query: 255 HVGLLELLLDKGADILREDGEGLTALS 281
+ +LLL GAD +++ +G T L
Sbjct: 122 KYEICKLLLQHGADPTKKNRDGNTPLD 148
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 57/137 (41%), Gaps = 5/137 (3%)
Query: 214 LMLAVKEGHWATAEKLLQ-HHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILRE 272
L+ A K G T +KL +G TPL AA V ++E LL GAD+ +
Sbjct: 14 LLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAK 73
Query: 273 DGEGLTALSWACMRGRIQAVTYLLDRDRGAMIEHVDINGLRPLDRAISCRNVPVVQCFLR 332
D GL L AC G + L+ GA++ D+ PL A + + + L+
Sbjct: 74 DKGGLVPLHNACSYGHYEVAELLV--KHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQ 131
Query: 333 KGAKLGPTTWSMAAGKP 349
GA PT + P
Sbjct: 132 HGAD--PTKKNRDGNTP 146
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 63/150 (42%), Gaps = 5/150 (3%)
Query: 169 AAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHAA--RGGHLQNLSPLMLAVKEGHWATA 226
A G G+ EA R L+ A A G +T + V + R + +PL A +
Sbjct: 2 AMGSGNSEADRQLLEA-AKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVV 60
Query: 227 EKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILREDGEGLTALSWACMR 286
E LLQH A + D PL A GH + ELL+ GA + D T L A +
Sbjct: 61 EYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAK 120
Query: 287 GRIQAVTYLLDRDRGAMIEHVDINGLRPLD 316
G+ + LL GA + +G PLD
Sbjct: 121 GKYEICKLLL--QHGADPTKKNRDGNTPLD 148
Score = 34.7 bits (78), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 48/119 (40%), Gaps = 16/119 (13%)
Query: 144 MIALLLEFHACIDLANSQGRTPLSLAAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHAA 203
++ LL+ A + + G PL A GH E LV GA + D
Sbjct: 59 VVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVAD----------- 107
Query: 204 RGGHLQNLSPLMLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELL 262
L +PL A +G + + LLQH A + + TPL + ++G + +LL
Sbjct: 108 ----LWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDL-VKDGDTDIQDLL 161
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 56/126 (44%), Gaps = 15/126 (11%)
Query: 137 AHEGNSEMIALLLEFHACIDLANSQGRTPLSLAAGRGHMEAVRTLVAAGASLGRTDTTGR 196
A G + + +L A ++ + G TPL LAA GH+E V L+ GA + T TGR
Sbjct: 22 ARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTGR 81
Query: 197 CALVHAARGGHLQNLSPLMLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHV 256
+PL LA H E LL+H A ++ D KT I+ G+
Sbjct: 82 ---------------TPLHLAAWADHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNE 126
Query: 257 GLLELL 262
L E+L
Sbjct: 127 DLAEIL 132
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 56/120 (46%), Gaps = 15/120 (12%)
Query: 169 AAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPLMLAVKEGHWATAEK 228
AA G + VR L A GA + D G +PL LA GH E
Sbjct: 21 AARAGQDDEVRILTANGADVNANDYWGH---------------TPLHLAAMLGHLEIVEV 65
Query: 229 LLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILREDGEGLTALSWACMRGR 288
LL++ A ++ T + +TPL +AA H+ ++E+LL GAD+ +D G TA + G
Sbjct: 66 LLKNGADVNATGNTGRTPLHLAAWADHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGN 125
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 49/89 (55%), Gaps = 2/89 (2%)
Query: 111 RLLLLSGADANHITEFLGAAPALCLFAHEGNSEMIALLLEFHACIDLANSQGRTPLSLAA 170
R+L +GAD N ++ G P L L A G+ E++ +LL+ A ++ + GRTPL LAA
Sbjct: 31 RILTANGADVN-ANDYWGHTP-LHLAAMLGHLEIVEVLLKNGADVNATGNTGRTPLHLAA 88
Query: 171 GRGHMEAVRTLVAAGASLGRTDTTGRCAL 199
H+E V L+ GA + D G+ A
Sbjct: 89 WADHLEIVEVLLKHGADVNAQDKFGKTAF 117
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 51/121 (42%), Gaps = 2/121 (1%)
Query: 212 SPLMLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILR 271
L+ A + G L + A ++ D TPL +AA GH+ ++E+LL GAD+
Sbjct: 16 KKLLEAARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNA 75
Query: 272 EDGEGLTALSWACMRGRIQAVTYLLDRDRGAMIEHVDINGLRPLDRAISCRNVPVVQCFL 331
G T L A ++ V LL GA + D G D +I N + +
Sbjct: 76 TGNTGRTPLHLAAWADHLEIVEVLL--KHGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 133
Query: 332 R 332
+
Sbjct: 134 K 134
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 65/147 (44%), Gaps = 18/147 (12%)
Query: 137 AHEGNSEMIALLLEFHA--CIDLANSQGRTPLSLAAGRGHMEAVRTLVAAGASLGRTDTT 194
A G+ E + L + C D+ Q TPL AAG + V L+ GA + D
Sbjct: 20 AKAGDVETVKKLCTVQSVNCRDIEGRQ-STPLHFAAGYNRVSVVEYLLQHGADVHAKDKG 78
Query: 195 GRCALVHAARGGHLQNLSPLMLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEG 254
G L PL A GH+ AE L++H A ++ D TPL AA +G
Sbjct: 79 G---------------LVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKG 123
Query: 255 HVGLLELLLDKGADILREDGEGLTALS 281
+ +LLL GAD +++ +G T L
Sbjct: 124 KYEICKLLLQHGADPTKKNRDGNTPLD 150
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 57/137 (41%), Gaps = 5/137 (3%)
Query: 214 LMLAVKEGHWATAEKLLQ-HHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILRE 272
L+ A K G T +KL +G TPL AA V ++E LL GAD+ +
Sbjct: 16 LLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAK 75
Query: 273 DGEGLTALSWACMRGRIQAVTYLLDRDRGAMIEHVDINGLRPLDRAISCRNVPVVQCFLR 332
D GL L AC G + L+ GA++ D+ PL A + + + L+
Sbjct: 76 DKGGLVPLHNACSYGHYEVAELLV--KHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQ 133
Query: 333 KGAKLGPTTWSMAAGKP 349
GA PT + P
Sbjct: 134 HGAD--PTKKNRDGNTP 148
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 64/162 (39%), Gaps = 16/162 (9%)
Query: 155 IDLANSQGRTPLSLAAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPL 214
I L NS+ L AA G +E V+ L S+ D GR + +PL
Sbjct: 5 ISLGNSEADRQLLEAAKAGDVETVKKLCTV-QSVNCRDIEGRQS-------------TPL 50
Query: 215 MLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILREDG 274
A + E LLQH A + D PL A GH + ELL+ GA + D
Sbjct: 51 HFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADL 110
Query: 275 EGLTALSWACMRGRIQAVTYLLDRDRGAMIEHVDINGLRPLD 316
T L A +G+ + LL GA + +G PLD
Sbjct: 111 WKFTPLHEAAAKGKYEICKLLL--QHGADPTKKNRDGNTPLD 150
Score = 34.7 bits (78), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 48/119 (40%), Gaps = 16/119 (13%)
Query: 144 MIALLLEFHACIDLANSQGRTPLSLAAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHAA 203
++ LL+ A + + G PL A GH E LV GA + D
Sbjct: 61 VVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVAD----------- 109
Query: 204 RGGHLQNLSPLMLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELL 262
L +PL A +G + + LLQH A + + TPL + ++G + +LL
Sbjct: 110 ----LWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDL-VKDGDTDIQDLL 163
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 52/111 (46%), Gaps = 15/111 (13%)
Query: 157 LANSQGRTPLSLAAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPLML 216
N +G T L +A+ +G + +V L+ G+ D G +PL
Sbjct: 5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAG---------------WTPLHE 49
Query: 217 AVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGA 267
A GH E LLQH A ++ T + +PL AA+ GHV +++LLL GA
Sbjct: 50 ACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGA 100
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 50/103 (48%), Gaps = 2/103 (1%)
Query: 214 LMLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILRED 273
L +A +G + E LLQ+ + + D + TPL A GH+ ++ELLL A +
Sbjct: 14 LHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTG 73
Query: 274 GEGLTALSWACMRGRIQAVTYLLDRDRGAMIEHVDINGLRPLD 316
+ + L A G + V LL GA V+I GLRP+D
Sbjct: 74 YQNDSPLHDAAKNGHVDIVKLLL--SYGASRNAVNIFGLRPVD 114
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 2/92 (2%)
Query: 244 KTPLMIAAQEGHVGLLELLLDKGADILREDGEGLTALSWACMRGRIQAVTYLLDRDRGAM 303
+T L IA+ +G + +E LL G+D +D G T L AC G ++ V LL A+
Sbjct: 11 ETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHK--AL 68
Query: 304 IEHVDINGLRPLDRAISCRNVPVVQCFLRKGA 335
+ PL A +V +V+ L GA
Sbjct: 69 VNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGA 100
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 45/83 (54%), Gaps = 2/83 (2%)
Query: 113 LLLSGADANHITEFLGAAPALCLFAHEGNSEMIALLLEFHACIDLANSQGRTPLSLAAGR 172
LL +G+D N + + G P L + G+ +++ LLL+ A ++ Q +PL AA
Sbjct: 29 LLQNGSDPN-VKDHAGWTP-LHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAAKN 86
Query: 173 GHMEAVRTLVAAGASLGRTDTTG 195
GH++ V+ L++ GAS + G
Sbjct: 87 GHVDIVKLLLSYGASRNAVNIFG 109
Score = 32.3 bits (72), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 52/126 (41%), Gaps = 26/126 (20%)
Query: 139 EGNSEMIALLLEFHACIDLANSQGRTPLSLAAGRGHMEAVRTLVAAGASLGRTDTTGRCA 198
+G+ + LL+ + ++ + G TPL A GH++ V L+ A +TTG
Sbjct: 20 KGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKA---LVNTTG--- 73
Query: 199 LVHAARGGHLQNLSPLMLAVKEGHWATAEKLLQHHA-----------PLDQTDGSHKTPL 247
QN SPL A K GH + LL + A P+D TD L
Sbjct: 74 ---------YQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSL 124
Query: 248 MIAAQE 253
++ ++
Sbjct: 125 LLLPEK 130
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 49/109 (44%), Gaps = 15/109 (13%)
Query: 161 QGRTPLSLAAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPLMLAVKE 220
G TPL AA GH E V+ L++ GA + G +PL LA K
Sbjct: 8 DGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGN---------------TPLHLAAKN 52
Query: 221 GHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADI 269
GH + LL A ++ TP +A + GH +++LL KGAD+
Sbjct: 53 GHAEIVKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADV 101
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 42/84 (50%)
Query: 212 SPLMLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILR 271
+PL A K GH +KLL A ++ TPL +AA+ GH +++LLL KGAD+
Sbjct: 11 TPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNA 70
Query: 272 EDGEGLTALSWACMRGRIQAVTYL 295
+G T A G + V L
Sbjct: 71 RSKDGNTPEHLAKKNGHHEIVKLL 94
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 45/98 (45%), Gaps = 2/98 (2%)
Query: 245 TPLMIAAQEGHVGLLELLLDKGADILREDGEGLTALSWACMRGRIQAVTYLLDRDRGAMI 304
TPL AA+ GH ++ LL KGAD+ +G T L A G + V LL +GA +
Sbjct: 11 TPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLL--AKGADV 68
Query: 305 EHVDINGLRPLDRAISCRNVPVVQCFLRKGAKLGPTTW 342
+G P A + +V+ KGA + +W
Sbjct: 69 NARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSW 106
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 52/105 (49%), Gaps = 7/105 (6%)
Query: 84 WISSVCQSPAQALCSLRNVYSPNVKVSRLLLLSGADANHITEFLGAAPALCLFAHEGNSE 143
W S +P + +N ++ VK LL GAD N ++ G P L L A G++E
Sbjct: 4 WGSKDGNTPLH--NAAKNGHAEEVKK---LLSKGADVNARSKD-GNTP-LHLAAKNGHAE 56
Query: 144 MIALLLEFHACIDLANSQGRTPLSLAAGRGHMEAVRTLVAAGASL 188
++ LLL A ++ + G TP LA GH E V+ L A GA +
Sbjct: 57 IVKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADV 101
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 35/71 (49%)
Query: 137 AHEGNSEMIALLLEFHACIDLANSQGRTPLSLAAGRGHMEAVRTLVAAGASLGRTDTTGR 196
A G++E + LL A ++ + G TPL LAA GH E V+ L+A GA + G
Sbjct: 17 AKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGN 76
Query: 197 CALVHAARGGH 207
A + GH
Sbjct: 77 TPEHLAKKNGH 87
>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI8|D Chain D, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
Length = 166
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 51/107 (47%), Gaps = 16/107 (14%)
Query: 181 LVAAGASLGRTDTTGRCALVHAARGGHLQNLSPLMLAVKEGHWATAEKLLQHHAPLDQTD 240
L+ GAS DT+G + AAR G L L + L++H A ++ D
Sbjct: 60 LLKQGASPNVQDTSGTSPVHDAARTGFLDTL---------------KVLVEHGADVNVPD 104
Query: 241 GSHKTPLMIAAQEGHVGLLELLLDKGADILREDGEGLTALSWACMRG 287
G+ P+ +A QEGH ++ L + +D+ R D GLT L A RG
Sbjct: 105 GTGALPIHLAVQEGHTAVVSFLAAE-SDLHRRDARGLTPLELALQRG 150
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 49/99 (49%), Gaps = 3/99 (3%)
Query: 221 GHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILREDGEGLTAL 280
G A A +LL+ A + D S +P+ AA+ G + L++L++ GAD+ DG G +
Sbjct: 52 GSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPI 111
Query: 281 SWACMRGRIQAVTYLLDRDRGAMIEHVDINGLRPLDRAI 319
A G V++L + + D GL PL+ A+
Sbjct: 112 HLAVQEGHTAVVSFLAAE---SDLHRRDARGLTPLELAL 147
>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d
Length = 156
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 212 SPLMLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILR 271
SP+ A + G T + L++H A ++ DG+ P+ +A QEGH ++ L + +D+ R
Sbjct: 70 SPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHR 128
Query: 272 EDGEGLTALSWACMRG 287
D GLT L A RG
Sbjct: 129 RDARGLTPLELALQRG 144
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 49/99 (49%), Gaps = 3/99 (3%)
Query: 221 GHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILREDGEGLTAL 280
G A A +LL+ A + D S +P+ AA+ G + L++L++ GAD+ DG G +
Sbjct: 46 GSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPI 105
Query: 281 SWACMRGRIQAVTYLLDRDRGAMIEHVDINGLRPLDRAI 319
A G V++L + + D GL PL+ A+
Sbjct: 106 HLAVQEGHTAVVSFLAAE---SDLHRRDARGLTPLELAL 141
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/155 (33%), Positives = 72/155 (46%), Gaps = 17/155 (10%)
Query: 142 SEMIALLLEFHACIDLANSQGRTPLSLAAGRGHMEAVRTLVAAGASLGRTDTTGRCALVH 201
S+++A E +A +D G T L LAA +A + L+ AGA D TGR L H
Sbjct: 34 SDLLAQGAELNATMD---KTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPL-H 89
Query: 202 AARGGHLQNLSPLMLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLEL 261
AA + ++L + AT H DG+ TPL++AA+ G++E
Sbjct: 90 AAVAADAMGVFQILLRNR----ATNLNARMH-------DGT--TPLILAARLAIEGMVED 136
Query: 262 LLDKGADILREDGEGLTALSWACMRGRIQAVTYLL 296
L+ ADI D G TAL WA +AV LL
Sbjct: 137 LITADADINAADNSGKTALHWAAAVNNTEAVNILL 171
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 63/163 (38%), Gaps = 30/163 (18%)
Query: 113 LLLSGADANHITEFLGAAPALCLFAHEGNSEMIALLLEFHACIDLANSQGRTPLSLAAGR 172
LL +GADAN + G P A + LL ++ G TPL LAA
Sbjct: 70 LLDAGADANS-QDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARL 128
Query: 173 GHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPLMLAVKEGHWATAEK---- 228
V L+ A A + D +G+ AL HWA A
Sbjct: 129 AIEGMVEDLITADADINAADNSGKTAL----------------------HWAAAVNNTEA 166
Query: 229 ---LLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGAD 268
LL HHA D D +TPL +AA+EG + LLD A+
Sbjct: 167 VNILLMHHANRDAQDDKDETPLFLAAREGSYEASKALLDNFAN 209
Score = 32.7 bits (73), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 29/58 (50%)
Query: 140 GNSEMIALLLEFHACIDLANSQGRTPLSLAAGRGHMEAVRTLVAAGASLGRTDTTGRC 197
N+E + +LL HA D + + TPL LAA G EA + L+ A+ TD R
Sbjct: 162 NNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYEASKALLDNFANREITDHMDRL 219
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 73/178 (41%), Gaps = 20/178 (11%)
Query: 103 YSPNVKVSRLLLLSGADANHITEFLGAAPALCLFAHEGNSEMIALLLEFHACIDLANSQG 162
YS + RLL S ADAN I + +G P + + L+ +D G
Sbjct: 35 YSRSDAAKRLLEAS-ADAN-IQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDG 92
Query: 163 RTPLSLAAGRGHMEAVRTLVAAGASLGRTDTTGRCAL---------------VHAARGGH 207
TPL LAA + L+ + A + D G+ AL +
Sbjct: 93 TTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKD 152
Query: 208 LQN---LSPLMLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELL 262
+QN +PL LA +EG + TA+ LL H A D TD + P IA + H ++ LL
Sbjct: 153 MQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLL 210
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 68/156 (43%), Gaps = 26/156 (16%)
Query: 128 GAAPA-LCLFAHEGNSEMIALLLEFHACIDLANSQGRTPLSLAAGRGHMEAVRTLVAAGA 186
G APA + F ++G S H D G T L LAA +A + L+ A A
Sbjct: 1 GDAPAVISDFIYQGAS--------LHNQTD---RTGETALHLAARYSRSDAAKRLLEASA 49
Query: 187 SLGRTDTTGRCALVHAARGGHLQNLSPLMLAVKEGHWATAEKLLQHHAPLDQTDGSHKTP 246
D GR L HAA Q + +++ + AT H DG+ TP
Sbjct: 50 DANIQDNMGRTPL-HAAVSADAQGVFQILIRNR----ATDLDARMH-------DGT--TP 95
Query: 247 LMIAAQEGHVGLLELLLDKGADILREDGEGLTALSW 282
L++AA+ G+LE L++ AD+ D G +AL W
Sbjct: 96 LILAARLAVEGMLEDLINSHADVNAVDDLGKSALHW 131
Score = 34.7 bits (78), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 74/185 (40%), Gaps = 15/185 (8%)
Query: 113 LLLSGADANHITEFLGAAPALCLFAHEGNSEMIALLLEFHACIDLANSQGRTPLSLAAGR 172
+ GA ++ T+ G AL L A S+ LLE A ++ ++ GRTPL A
Sbjct: 10 FIYQGASLHNQTDRTGET-ALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSA 68
Query: 173 GHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPLMLAVKEGHWATAEKLLQH 232
+ L+ R T A +H +PL+LA + E L+
Sbjct: 69 DAQGVFQILI-------RNRATDLDARMH-------DGTTPLILAARLAVEGMLEDLINS 114
Query: 233 HAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILREDGEGLTALSWACMRGRIQAV 292
HA ++ D K+ L AA +V +LL GA+ ++ T L A G +
Sbjct: 115 HADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETA 174
Query: 293 TYLLD 297
LLD
Sbjct: 175 KVLLD 179
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 73/178 (41%), Gaps = 20/178 (11%)
Query: 103 YSPNVKVSRLLLLSGADANHITEFLGAAPALCLFAHEGNSEMIALLLEFHACIDLANSQG 162
YS + RLL S ADAN I + +G P + + L+ +D G
Sbjct: 67 YSRSDAAKRLLEAS-ADAN-IQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDG 124
Query: 163 RTPLSLAAGRGHMEAVRTLVAAGASLGRTDTTGRCAL---------------VHAARGGH 207
TPL LAA + L+ + A + D G+ AL +
Sbjct: 125 TTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKD 184
Query: 208 LQN---LSPLMLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELL 262
+QN +PL LA +EG + TA+ LL H A D TD + P IA + H ++ LL
Sbjct: 185 MQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLL 242
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 56/121 (46%), Gaps = 14/121 (11%)
Query: 162 GRTPLSLAAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPLMLAVKEG 221
G T L LAA +A + L+ A A D GR L HAA Q + +++ +
Sbjct: 57 GETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPL-HAAVSADAQGVFQILIRNR-- 113
Query: 222 HWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILREDGEGLTALS 281
AT H DG+ TPL++AA+ G+LE L++ AD+ D G +AL
Sbjct: 114 --ATDLDARMH-------DGT--TPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALH 162
Query: 282 W 282
W
Sbjct: 163 W 163
Score = 34.7 bits (78), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 74/185 (40%), Gaps = 15/185 (8%)
Query: 113 LLLSGADANHITEFLGAAPALCLFAHEGNSEMIALLLEFHACIDLANSQGRTPLSLAAGR 172
+ GA ++ T+ G AL L A S+ LLE A ++ ++ GRTPL A
Sbjct: 42 FIYQGASLHNQTDRTGET-ALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSA 100
Query: 173 GHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPLMLAVKEGHWATAEKLLQH 232
+ L+ R T A +H +PL+LA + E L+
Sbjct: 101 DAQGVFQILI-------RNRATDLDARMH-------DGTTPLILAARLAVEGMLEDLINS 146
Query: 233 HAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILREDGEGLTALSWACMRGRIQAV 292
HA ++ D K+ L AA +V +LL GA+ ++ T L A G +
Sbjct: 147 HADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETA 206
Query: 293 TYLLD 297
LLD
Sbjct: 207 KVLLD 211
>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
pdb|3T9K|B Chain B, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
Length = 390
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 46/102 (45%), Gaps = 4/102 (3%)
Query: 198 ALVHAAR----GGHLQNLSPLMLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQE 253
AL H A G N +PL+ A E LLQ+ A ++Q D + + PL A
Sbjct: 219 ALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATIL 278
Query: 254 GHVGLLELLLDKGADILREDGEGLTALSWACMRGRIQAVTYL 295
GH GL L L +GAD+ D EG L+ A VT L
Sbjct: 279 GHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLL 320
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 41/99 (41%), Gaps = 15/99 (15%)
Query: 164 TPLSLAAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPLMLAVKEGHW 223
TPL A + A L+ GA++ + D+ GR L HA +L GH
Sbjct: 237 TPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHAT-----------IL----GHT 281
Query: 224 ATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELL 262
A L+ A L D + PL IA + + ++ LL
Sbjct: 282 GLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLL 320
>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
pdb|4F1P|B Chain B, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
Length = 368
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 46/102 (45%), Gaps = 4/102 (3%)
Query: 198 ALVHAAR----GGHLQNLSPLMLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQE 253
AL H A G N +PL+ A E LLQ+ A ++Q D + + PL A
Sbjct: 219 ALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATIL 278
Query: 254 GHVGLLELLLDKGADILREDGEGLTALSWACMRGRIQAVTYL 295
GH GL L L +GAD+ D EG L+ A VT L
Sbjct: 279 GHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLL 320
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 39/99 (39%), Gaps = 15/99 (15%)
Query: 164 TPLSLAAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPLMLAVKEGHW 223
TPL A + A L+ GA++ + D+ GR L H A GH
Sbjct: 237 TPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHH---------------ATILGHT 281
Query: 224 ATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELL 262
A L+ A L D + PL IA + + ++ LL
Sbjct: 282 GLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLL 320
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 73/178 (41%), Gaps = 20/178 (11%)
Query: 103 YSPNVKVSRLLLLSGADANHITEFLGAAPALCLFAHEGNSEMIALLLEFHACIDLANSQG 162
YS + RLL S ADAN I + +G P + + L+ +D G
Sbjct: 68 YSRSDAAKRLLEAS-ADAN-IQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDG 125
Query: 163 RTPLSLAAGRGHMEAVRTLVAAGASLGRTDTTGRCAL---------------VHAARGGH 207
TPL LAA + L+ + A + D G+ AL +
Sbjct: 126 TTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKD 185
Query: 208 LQN---LSPLMLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELL 262
+QN +PL LA +EG + TA+ LL H A D TD + P IA + H ++ LL
Sbjct: 186 MQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLL 243
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 56/121 (46%), Gaps = 14/121 (11%)
Query: 162 GRTPLSLAAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPLMLAVKEG 221
G T L LAA +A + L+ A A D GR L HAA Q + +++ +
Sbjct: 58 GETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPL-HAAVSADAQGVFQILIRNR-- 114
Query: 222 HWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILREDGEGLTALS 281
AT H DG+ TPL++AA+ G+LE L++ AD+ D G +AL
Sbjct: 115 --ATDLDARMH-------DGT--TPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALH 163
Query: 282 W 282
W
Sbjct: 164 W 164
Score = 35.0 bits (79), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 74/185 (40%), Gaps = 15/185 (8%)
Query: 113 LLLSGADANHITEFLGAAPALCLFAHEGNSEMIALLLEFHACIDLANSQGRTPLSLAAGR 172
+ GA ++ T+ G AL L A S+ LLE A ++ ++ GRTPL A
Sbjct: 43 FIYQGASLHNQTDRTGET-ALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSA 101
Query: 173 GHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPLMLAVKEGHWATAEKLLQH 232
+ L+ R T A +H +PL+LA + E L+
Sbjct: 102 DAQGVFQILI-------RNRATDLDARMH-------DGTTPLILAARLAVEGMLEDLINS 147
Query: 233 HAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILREDGEGLTALSWACMRGRIQAV 292
HA ++ D K+ L AA +V +LL GA+ ++ T L A G +
Sbjct: 148 HADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETA 207
Query: 293 TYLLD 297
LLD
Sbjct: 208 KVLLD 212
>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 183
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 68/162 (41%), Gaps = 19/162 (11%)
Query: 161 QGRTPLSL--AAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPLMLAV 218
QG LS+ A +G M + T + + TD G +PLM A
Sbjct: 16 QGANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEG---------------FTPLMWAA 60
Query: 219 KEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILREDGEGLT 278
G A E LLQ+ A ++ L +A +G+ ++++LLD G D+ D G T
Sbjct: 61 AHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGT 120
Query: 279 ALSWACMRGRIQAVTYLLDRDRGAMIEHVDINGLRPLDRAIS 320
L +A ++ V LL+ IE +G +D A++
Sbjct: 121 PLLYAVHGNHVKCVKMLLESGADPTIE--TDSGYNSMDLAVA 160
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 66/155 (42%), Gaps = 21/155 (13%)
Query: 136 FAHEGNSEMIALLLEFHACIDLANSQGRTPLSLAAGRGHMEAVRTLVAAGAS---LGRTD 192
A +G +A +E I+ + +G TPL AA G + V L+ GA LG+
Sbjct: 26 LAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGK-- 83
Query: 193 TTGRCALVHAARGGHLQNLSPLMLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQ 252
GR S L LA +G+ + LL +++ D + TPL+ A
Sbjct: 84 --GR--------------ESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVH 127
Query: 253 EGHVGLLELLLDKGADILREDGEGLTALSWACMRG 287
HV +++LL+ GAD E G ++ A G
Sbjct: 128 GNHVKCVKMLLESGADPTIETDSGYNSMDLAVALG 162
Score = 34.7 bits (78), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
Query: 107 VKVSRLLLLSGADANHITEFLGAAPALCLFAHEGNSEMIALLLEFHACIDLANSQGRTPL 166
+ V LL +GAD + + G AL L +G ++++ +LL+ ++ + G TPL
Sbjct: 65 IAVVEFLLQNGADPQLLGK--GRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPL 122
Query: 167 SLAAGRGHMEAVRTLVAAGA 186
A H++ V+ L+ +GA
Sbjct: 123 LYAVHGNHVKCVKMLLESGA 142
>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
pdb|3JUE|B Chain B, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
Length = 368
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 46/102 (45%), Gaps = 4/102 (3%)
Query: 198 ALVHAAR----GGHLQNLSPLMLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQE 253
AL H A G N +PL+ A E LLQ+ A ++Q D + + PL A
Sbjct: 219 ALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATIL 278
Query: 254 GHVGLLELLLDKGADILREDGEGLTALSWACMRGRIQAVTYL 295
GH GL L L +GAD+ D EG L+ A VT L
Sbjct: 279 GHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLL 320
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 39/99 (39%), Gaps = 15/99 (15%)
Query: 164 TPLSLAAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPLMLAVKEGHW 223
TPL A + A L+ GA++ + D+ GR L H A GH
Sbjct: 237 TPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHH---------------ATILGHT 281
Query: 224 ATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELL 262
A L+ A L D + PL IA + + ++ LL
Sbjct: 282 GLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLL 320
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 73/178 (41%), Gaps = 20/178 (11%)
Query: 103 YSPNVKVSRLLLLSGADANHITEFLGAAPALCLFAHEGNSEMIALLLEFHACIDLANSQG 162
YS + RLL S ADAN I + +G P + + L+ +D G
Sbjct: 67 YSRSDAAKRLLEAS-ADAN-IQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDG 124
Query: 163 RTPLSLAAGRGHMEAVRTLVAAGASLGRTDTTGRCAL---------------VHAARGGH 207
TPL LAA + L+ + A + D G+ AL +
Sbjct: 125 TTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKD 184
Query: 208 LQN---LSPLMLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELL 262
+QN +PL LA +EG + TA+ LL H A D TD + P IA + H ++ LL
Sbjct: 185 MQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLL 242
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 56/121 (46%), Gaps = 14/121 (11%)
Query: 162 GRTPLSLAAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPLMLAVKEG 221
G T L LAA +A + L+ A A D GR L HAA Q + +++ +
Sbjct: 57 GATALHLAAAYSRSDAAKRLLEASADANIQDNMGRTPL-HAAVSADAQGVFQILIRNR-- 113
Query: 222 HWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILREDGEGLTALS 281
AT H DG+ TPL++AA+ G+LE L++ AD+ D G +AL
Sbjct: 114 --ATDLDARMH-------DGT--TPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALH 162
Query: 282 W 282
W
Sbjct: 163 W 163
Score = 35.8 bits (81), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 75/185 (40%), Gaps = 15/185 (8%)
Query: 113 LLLSGADANHITEFLGAAPALCLFAHEGNSEMIALLLEFHACIDLANSQGRTPLSLAAGR 172
+ GA ++ T+ GA AL L A S+ LLE A ++ ++ GRTPL A
Sbjct: 42 FIYQGASLHNQTDRTGAT-ALHLAAAYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSA 100
Query: 173 GHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPLMLAVKEGHWATAEKLLQH 232
+ L+ R T A +H +PL+LA + E L+
Sbjct: 101 DAQGVFQILI-------RNRATDLDARMH-------DGTTPLILAARLAVEGMLEDLINS 146
Query: 233 HAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILREDGEGLTALSWACMRGRIQAV 292
HA ++ D K+ L AA +V +LL GA+ ++ T L A G +
Sbjct: 147 HADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETA 206
Query: 293 TYLLD 297
LLD
Sbjct: 207 KVLLD 211
>pdb|3SO8|A Chain A, Crystal Structure Of Ankra
Length = 162
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 66/155 (42%), Gaps = 21/155 (13%)
Query: 136 FAHEGNSEMIALLLEFHACIDLANSQGRTPLSLAAGRGHMEAVRTLVAAGAS---LGRTD 192
A +G +A +E I+ + +G TPL AA G + V L+ GA LG+
Sbjct: 8 LAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGK-- 65
Query: 193 TTGRCALVHAARGGHLQNLSPLMLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQ 252
GR S L LA +G+ + LL +++ D + TPL+ A
Sbjct: 66 --GR--------------ESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVH 109
Query: 253 EGHVGLLELLLDKGADILREDGEGLTALSWACMRG 287
HV +++LL+ GAD E G ++ A G
Sbjct: 110 GNHVKCVKMLLESGADPTIETDSGYNSMDLAVALG 144
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 53/112 (47%), Gaps = 2/112 (1%)
Query: 209 QNLSPLMLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGAD 268
+ +PLM A G A E LLQ+ A ++ L +A +G+ ++++LLD G D
Sbjct: 33 EGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVD 92
Query: 269 ILREDGEGLTALSWACMRGRIQAVTYLLDRDRGAMIEHVDINGLRPLDRAIS 320
+ D G T L +A ++ V LL+ IE +G +D A++
Sbjct: 93 VNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIE--TDSGYNSMDLAVA 142
Score = 34.7 bits (78), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
Query: 107 VKVSRLLLLSGADANHITEFLGAAPALCLFAHEGNSEMIALLLEFHACIDLANSQGRTPL 166
+ V LL +GAD + + G AL L +G ++++ +LL+ ++ + G TPL
Sbjct: 47 IAVVEFLLQNGADPQLLGK--GRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPL 104
Query: 167 SLAAGRGHMEAVRTLVAAGA 186
A H++ V+ L+ +GA
Sbjct: 105 LYAVHGNHVKCVKMLLESGA 124
Score = 31.6 bits (70), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 40/116 (34%), Gaps = 31/116 (26%)
Query: 251 AQEGHVGLLELLLDKGADILREDGEGLTALSWACMRGRIQAVTYLLDR------------ 298
A +G + L +++ I D EG T L WA G+I V +LL
Sbjct: 9 AAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRE 68
Query: 299 -------------------DRGAMIEHVDINGLRPLDRAISCRNVPVVQCFLRKGA 335
D G + D NG PL A+ +V V+ L GA
Sbjct: 69 SALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGA 124
>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein
Length = 201
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 76/166 (45%), Gaps = 21/166 (12%)
Query: 128 GAAPALCLFAHEGNSEMIALLLEFHACIDLANSQGRTPLSLAAGRGHMEAVRTLVA-AGA 186
G P L + H + E+ L++ A I+L NS +P A +G E + ++ A
Sbjct: 39 GNTP-LNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATP 97
Query: 187 SLGRTDTTGRCALVHAARGGHLQNLSPLMLAVKEGHWATAEKLLQHHAPLDQTDGSHKTP 246
L + + G AL+ AA GH+ N+ L+ +E +D + T
Sbjct: 98 DLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGRE--------------DIDFQNDFGYTA 143
Query: 247 LM--IAAQEG---HVGLLELLLDKGADILREDGEGLTALSWACMRG 287
L+ + +EG + +++LL++ GAD +D G TA+ +A +G
Sbjct: 144 LIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKG 189
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 64/135 (47%), Gaps = 23/135 (17%)
Query: 155 IDLANSQGRTPLSLAAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNL--- 211
+D +++G TPL++A +E + L+ GA + +LQN
Sbjct: 32 VDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADI------------------NLQNSISD 73
Query: 212 SPLMLAVKEGHWATAEKLLQHHAP-LDQTDGSHKTPLMIAAQEGHVGLLELLLDKG-ADI 269
SP + A +G +L+H P L++ + L+ AA++GH+ ++LLL+ G DI
Sbjct: 74 SPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDI 133
Query: 270 LREDGEGLTALSWAC 284
++ G TAL A
Sbjct: 134 DFQNDFGYTALIEAV 148
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 211 LSPLMLAVKEGHWATAEKLLQHHA-PLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADI 269
+ L+ A + +++LQ +D+ D TPL IA + + + L+D+GADI
Sbjct: 6 VGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADI 65
Query: 270 LREDGEGLTALSWACMRGRIQAVTYLL 296
++ + +A +GR + + Y+L
Sbjct: 66 NLQNSISDSPYLYAGAQGRTEILAYML 92
>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
pdb|3V31|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 167
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 66/155 (42%), Gaps = 21/155 (13%)
Query: 136 FAHEGNSEMIALLLEFHACIDLANSQGRTPLSLAAGRGHMEAVRTLVAAGAS---LGRTD 192
A +G +A +E I+ + +G TPL AA G + V L+ GA LG+
Sbjct: 10 LAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGK-- 67
Query: 193 TTGRCALVHAARGGHLQNLSPLMLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQ 252
GR S L LA +G+ + LL +++ D + TPL+ A
Sbjct: 68 --GR--------------ESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVH 111
Query: 253 EGHVGLLELLLDKGADILREDGEGLTALSWACMRG 287
HV +++LL+ GAD E G ++ A G
Sbjct: 112 GNHVKCVKMLLESGADPTIETDSGYNSMDLAVALG 146
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 53/112 (47%), Gaps = 2/112 (1%)
Query: 209 QNLSPLMLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGAD 268
+ +PLM A G A E LLQ+ A ++ L +A +G+ ++++LLD G D
Sbjct: 35 EGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVD 94
Query: 269 ILREDGEGLTALSWACMRGRIQAVTYLLDRDRGAMIEHVDINGLRPLDRAIS 320
+ D G T L +A ++ V LL+ IE +G +D A++
Sbjct: 95 VNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIE--TDSGYNSMDLAVA 144
Score = 34.7 bits (78), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
Query: 107 VKVSRLLLLSGADANHITEFLGAAPALCLFAHEGNSEMIALLLEFHACIDLANSQGRTPL 166
+ V LL +GAD + + G AL L +G ++++ +LL+ ++ + G TPL
Sbjct: 49 IAVVEFLLQNGADPQLLGK--GRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPL 106
Query: 167 SLAAGRGHMEAVRTLVAAGA 186
A H++ V+ L+ +GA
Sbjct: 107 LYAVHGNHVKCVKMLLESGA 126
Score = 31.2 bits (69), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 40/116 (34%), Gaps = 31/116 (26%)
Query: 251 AQEGHVGLLELLLDKGADILREDGEGLTALSWACMRGRIQAVTYLLDR------------ 298
A +G + L +++ I D EG T L WA G+I V +LL
Sbjct: 11 AAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRE 70
Query: 299 -------------------DRGAMIEHVDINGLRPLDRAISCRNVPVVQCFLRKGA 335
D G + D NG PL A+ +V V+ L GA
Sbjct: 71 SALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGA 126
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 65/151 (43%), Gaps = 15/151 (9%)
Query: 133 LCLFAHEGNSEMIALLLEFHACIDLANSQGRTPLSLAAGRGHMEAVRTLVAAGASLGRTD 192
L + A G E++ LL A ++ N G TPL AA + E L+ GA+ D
Sbjct: 77 LHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKD 136
Query: 193 TTGRCALVHAARGGHLQNLSPLMLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQ 252
A+ AA G+L+ M+ + LL + A + D TPL +A
Sbjct: 137 HYEATAMHRAAAKGNLK-----MIHI----------LLYYKASTNIQDTEGNTPLHLACD 181
Query: 253 EGHVGLLELLLDKGADILREDGEGLTALSWA 283
E V +LL+ +GA I E+ E T L A
Sbjct: 182 EERVEEAKLLVSQGASIYIENKEEKTPLQVA 212
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 56/126 (44%), Gaps = 16/126 (12%)
Query: 173 GHMEAVRTLVAAGASLG-RTDTTGRCALVHAARGGHLQNLSPLMLAVKEGHWATAEKLLQ 231
G +E ++ + A SL RTD R AL A GH + E LLQ
Sbjct: 17 GKLEELKESILADKSLATRTDQDSRTALHWACSAGHTE---------------IVEFLLQ 61
Query: 232 HHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILREDGEGLTALSWACMRGRIQA 291
P++ D + +PL IAA G +++ LL KGA + + G T L +A + R +
Sbjct: 62 LGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEI 121
Query: 292 VTYLLD 297
LL+
Sbjct: 122 AVMLLE 127
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 54/99 (54%), Gaps = 3/99 (3%)
Query: 108 KVSRLLLLSGADANHITEFLGAAPALCLFAHEGNSEMIALLLEFHACIDLANSQGRTPLS 167
+++ +LL GA+ + + A A+ A +GN +MI +LL + A ++ +++G TPL
Sbjct: 120 EIAVMLLEGGANPDAKDHY--EATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLH 177
Query: 168 LAAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGG 206
LA +E + LV+ GAS+ + + L A+GG
Sbjct: 178 LACDEERVEEAKLLVSQGASIYIENKEEKTPL-QVAKGG 215
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 48/109 (44%), Gaps = 2/109 (1%)
Query: 227 EKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILREDGEGLTALSWACMR 286
E +L + +TD +T L A GH ++E LL G + +D G + L A
Sbjct: 24 ESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASA 83
Query: 287 GRIQAVTYLLDRDRGAMIEHVDINGLRPLDRAISCRNVPVVQCFLRKGA 335
GR + V LL +GA + V+ NG PL A S + L GA
Sbjct: 84 GRDEIVKALL--GKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGA 130
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 65/151 (43%), Gaps = 15/151 (9%)
Query: 133 LCLFAHEGNSEMIALLLEFHACIDLANSQGRTPLSLAAGRGHMEAVRTLVAAGASLGRTD 192
L + A G E++ LL A ++ N G TPL AA + E L+ GA+ D
Sbjct: 78 LHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKD 137
Query: 193 TTGRCALVHAARGGHLQNLSPLMLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQ 252
A+ AA G+L+ M+ + LL + A + D TPL +A
Sbjct: 138 HYEATAMHRAAAKGNLK-----MIHI----------LLYYKASTNIQDTEGNTPLHLACD 182
Query: 253 EGHVGLLELLLDKGADILREDGEGLTALSWA 283
E V +LL+ +GA I E+ E T L A
Sbjct: 183 EERVEEAKLLVSQGASIYIENKEEKTPLQVA 213
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 69/160 (43%), Gaps = 18/160 (11%)
Query: 173 GHMEAVRTLVAAGASLG-RTDTTGRCALVHAARGGHLQNLSPLMLAVKEGHWATAEKLLQ 231
G +E ++ + A SL RTD R AL A GH + E LLQ
Sbjct: 18 GKLEELKESILADKSLATRTDQDSRTALHWACSAGHTE---------------IVEFLLQ 62
Query: 232 HHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILREDGEGLTALSWACMRGRIQA 291
P++ D + +PL IAA G +++ LL KGA + + G T L +A + R +
Sbjct: 63 LGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEI 122
Query: 292 VTYLLDRDRGAMIEHVDINGLRPLDRAISCRNVPVVQCFL 331
LL + GA + D + RA + N+ ++ L
Sbjct: 123 AVMLL--EGGANPDAKDHYEATAMHRAAAKGNLKMIHILL 160
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 54/99 (54%), Gaps = 3/99 (3%)
Query: 108 KVSRLLLLSGADANHITEFLGAAPALCLFAHEGNSEMIALLLEFHACIDLANSQGRTPLS 167
+++ +LL GA+ + + A A+ A +GN +MI +LL + A ++ +++G TPL
Sbjct: 121 EIAVMLLEGGANPDAKDHY--EATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLH 178
Query: 168 LAAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGG 206
LA +E + LV+ GAS+ + + L A+GG
Sbjct: 179 LACDEERVEEAKLLVSQGASIYIENKEEKTPL-QVAKGG 216
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 48/109 (44%), Gaps = 2/109 (1%)
Query: 227 EKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILREDGEGLTALSWACMR 286
E +L + +TD +T L A GH ++E LL G + +D G + L A
Sbjct: 25 ESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASA 84
Query: 287 GRIQAVTYLLDRDRGAMIEHVDINGLRPLDRAISCRNVPVVQCFLRKGA 335
GR + V LL +GA + V+ NG PL A S + L GA
Sbjct: 85 GRDEIVKALL--GKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGA 131
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 72/178 (40%), Gaps = 20/178 (11%)
Query: 103 YSPNVKVSRLLLLSGADANHITEFLGAAPALCLFAHEGNSEMIALLLEFHACIDLANSQG 162
YS + RLL S ADA I + +G P + + LL +D G
Sbjct: 32 YSRSDAAKRLLEAS-ADAX-IQDNMGRTPLHAAVSADAQGVFQILLRNRATDLDARMHDG 89
Query: 163 RTPLSLAAGRGHMEAVRTLVAAGASLGRTDTTGRCAL---------------VHAARGGH 207
TPL LAA + L+ + A + D G+ AL +
Sbjct: 90 TTPLILAARLALEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKD 149
Query: 208 LQN---LSPLMLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELL 262
+QN +PL LA +EG + TA+ LL H A D TD + P IA + H ++ LL
Sbjct: 150 MQNNKEETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLL 207
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 56/121 (46%), Gaps = 14/121 (11%)
Query: 162 GRTPLSLAAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPLMLAVKEG 221
G T L LAA +A + L+ A A D GR L HAA Q + ++L +
Sbjct: 22 GETALHLAARYSRSDAAKRLLEASADAXIQDNMGRTPL-HAAVSADAQGVFQILLRNR-- 78
Query: 222 HWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILREDGEGLTALS 281
AT H DG+ TPL++AA+ G+LE L++ AD+ D G +AL
Sbjct: 79 --ATDLDARMH-------DGT--TPLILAARLALEGMLEDLINSHADVNAVDDLGKSALH 127
Query: 282 W 282
W
Sbjct: 128 W 128
>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Rfxank
Length = 172
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 61/140 (43%), Gaps = 17/140 (12%)
Query: 155 IDLANSQGRTPLSLAAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPL 214
++ + +G TPL A+ G +E VR L+ GA AL A+ GG+ +
Sbjct: 29 VNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVG-- 86
Query: 215 MLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILREDG 274
LL+ ++ D + TPL+ A + HV +E LL +GAD+ E
Sbjct: 87 -------------LLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEAD 133
Query: 275 EGLTALSWACMRG--RIQAV 292
G T + A G ++Q V
Sbjct: 134 SGYTPMDLAVALGYRKVQQV 153
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 60/134 (44%), Gaps = 17/134 (12%)
Query: 107 VKVSRLLLLSGADANHITEFLGAAPALCLFAHEGNSEMIALLLEFHACIDLANSQGRTPL 166
++ R LL GAD + + + AL L + G ++++ LLLE I++ + G TPL
Sbjct: 49 IETVRFLLEWGADPHILAK--ERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPL 106
Query: 167 SLAAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPLMLAVKEGHWATA 226
A H++ V L+A GA L +G +P+ LAV G+
Sbjct: 107 LYAVRGNHVKCVEALLARGADLTTEADSG---------------YTPMDLAVALGYRKVQ 151
Query: 227 EKLLQHHAPLDQTD 240
+ + H L Q++
Sbjct: 152 QVIENHILKLFQSN 165
Score = 34.7 bits (78), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 37/76 (48%)
Query: 140 GNSEMIALLLEFHACIDLANSQGRTPLSLAAGRGHMEAVRTLVAAGASLGRTDTTGRCAL 199
G E + LLE+ A + + + LSLA+ G+ + V L+ + D G L
Sbjct: 47 GEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPL 106
Query: 200 VHAARGGHLQNLSPLM 215
++A RG H++ + L+
Sbjct: 107 LYAVRGNHVKCVEALL 122
Score = 31.6 bits (70), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 46/119 (38%), Gaps = 32/119 (26%)
Query: 251 AQEGHVGLLELLLDKGADIL-REDGEGLTALSWACMRGRIQAVTYLLD------------ 297
A +G + L+ L KG +++ + D G T L WA G I+ V +LL+
Sbjct: 10 AAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKER 69
Query: 298 -------------------RDRGAMIEHVDINGLRPLDRAISCRNVPVVQCFLRKGAKL 337
+R I D NG PL A+ +V V+ L +GA L
Sbjct: 70 ESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADL 128
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
Length = 241
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 75/165 (45%), Gaps = 23/165 (13%)
Query: 155 IDLANSQGRTPLSLAAGRGHMEAVRTLVAAGASLGRTDTTGRCA---------------L 199
+D+ N+ +TPL LA VR LV AGAS D G+ A L
Sbjct: 39 LDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRAL 98
Query: 200 VHAARGGHLQ-------NLSPLMLAVKEGHWATAEKLLQHHAPLDQTD-GSHKTPLMIAA 251
+ +A G L L+ L +AV T + LL+ A +D D S ++PL+ A
Sbjct: 99 LDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAV 158
Query: 252 QEGHVGLLELLLDKGADILREDGEGLTALSWACMRGRIQAVTYLL 296
+ + +++LLL GA++ + G +AL A RG + V L+
Sbjct: 159 ENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLV 203
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 43/77 (55%), Gaps = 3/77 (3%)
Query: 111 RLLLLSGADANHITEFLGAAPALCLFAHEGNS-EMIALLLEFHACIDLANSQGRTPLSLA 169
+LLL GAD + + G +P + A E NS M+ LLL+ A ++ G + L A
Sbjct: 133 QLLLERGADIDAVDIKSGRSP--LIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSA 190
Query: 170 AGRGHMEAVRTLVAAGA 186
+GRG + VRTLV +GA
Sbjct: 191 SGRGLLPLVRTLVRSGA 207
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 67/172 (38%), Gaps = 40/172 (23%)
Query: 212 SPLMLAVKEGHWATAEKLL----QHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGA 267
+PL +AV +G+ +L+ Q LD + +TPL +A ++ LL+ GA
Sbjct: 11 TPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGA 70
Query: 268 DILREDGEGLTALSWACMRGRIQAVTYLLDR----------------------------- 298
+ D G TA AC + LLD
Sbjct: 71 SPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQE 130
Query: 299 ------DRGAMIEHVDI-NGLRPLDRAISCRNVPVVQCFLRKGAKLGPTTWS 343
+RGA I+ VDI +G PL A+ ++ +VQ L+ GA + +S
Sbjct: 131 TVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYS 182
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 48/111 (43%), Gaps = 16/111 (14%)
Query: 159 NSQGRTPLSLAAGRGHMEAVRTLVAAGASLGRTDT-TGRCALVHAARGGHLQNLSPLMLA 217
N G T L +A E V+ L+ GA + D +GR SPL+ A
Sbjct: 113 NYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGR---------------SPLIHA 157
Query: 218 VKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGAD 268
V+ + + LLQH A ++ S + L A+ G + L+ L+ GAD
Sbjct: 158 VENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGAD 208
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 54/110 (49%), Gaps = 5/110 (4%)
Query: 247 LMIAAQEGHVGLLELLLDKGADILREDGEGLTALSWACMRGRIQAVTYLLDRDRGAMIEH 306
L+ ++ EG L++ ++ + D + EG+TAL A G + V +L+ G +
Sbjct: 41 LLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQF--GVNVNA 98
Query: 307 VDINGLRPLDRAISCRNVPVVQCFLRKGAKLGPTTWS---MAAGKPEVME 353
D +G PL A SC NV V + + GA + T+S AA K E ME
Sbjct: 99 ADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEME 148
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 32/49 (65%)
Query: 140 GNSEMIALLLEFHACIDLANSQGRTPLSLAAGRGHMEAVRTLVAAGASL 188
G++E++ L++F ++ A+S G TPL AA +++ + LV +GA++
Sbjct: 81 GHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAV 129
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 54/110 (49%), Gaps = 5/110 (4%)
Query: 247 LMIAAQEGHVGLLELLLDKGADILREDGEGLTALSWACMRGRIQAVTYLLDRDRGAMIEH 306
L+ ++ EG L++ ++ + D + EG+TAL A G + V +L+ G +
Sbjct: 41 LLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQF--GVNVNA 98
Query: 307 VDINGLRPLDRAISCRNVPVVQCFLRKGAKLGPTTWS---MAAGKPEVME 353
D +G PL A SC NV V + + GA + T+S AA K E ME
Sbjct: 99 ADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEME 148
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 32/49 (65%)
Query: 140 GNSEMIALLLEFHACIDLANSQGRTPLSLAAGRGHMEAVRTLVAAGASL 188
G++E++ L++F ++ A+S G TPL AA +++ + LV +GA++
Sbjct: 81 GHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAV 129
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 72/169 (42%), Gaps = 24/169 (14%)
Query: 153 ACIDLANSQGRTPLSLAAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLS 212
A ++ N+ +TPL LA E L+ AG D G +
Sbjct: 33 AFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGN---------------T 77
Query: 213 PLMLAVKEGHWATAEKLLQH------HAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKG 266
PL LA ++G A+ L Q H+ L T+ + T L +A+ G++G++ELL+ G
Sbjct: 78 PLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLG 137
Query: 267 ADI-LREDGEGLTALSWACMRGRIQAVTYLLDRDRGAMIEHVDINGLRP 314
AD+ +E G TAL A V+ LL GA + V G P
Sbjct: 138 ADVNAQEPCNGRTALHLAVDLQNPDLVSLLL--KCGADVNRVTYQGYSP 184
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 48/105 (45%), Gaps = 9/105 (8%)
Query: 102 VYSPNVKVSRLLLLSGADANHITEFLGAAPALCLFAHEGNSEMIALLLE------FHACI 155
V + +++ LL +G D + +F G P L L +G + +L + H+ +
Sbjct: 50 VITNQPEIAEALLGAGCDPE-LRDFRGNTP-LHLACEQGCLASVGVLTQSCTTPHLHSIL 107
Query: 156 DLANSQGRTPLSLAAGRGHMEAVRTLVAAGASLGRTD-TTGRCAL 199
N G T L LA+ G++ V LV+ GA + + GR AL
Sbjct: 108 KATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTAL 152
>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank
Length = 172
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 60/140 (42%), Gaps = 17/140 (12%)
Query: 155 IDLANSQGRTPLSLAAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPL 214
++ + +G TPL A+ G +E VR L+ GA AL A+ GG+ +
Sbjct: 29 VNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVG-- 86
Query: 215 MLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILREDG 274
LL+ ++ D + TPL+ A HV +E LL +GAD+ E
Sbjct: 87 -------------LLLERDVDINIYDWNGGTPLLYAVHGNHVKCVEALLARGADLTTEAD 133
Query: 275 EGLTALSWACMRG--RIQAV 292
G T + A G ++Q V
Sbjct: 134 SGYTPMDLAVALGYRKVQQV 153
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 46/93 (49%), Gaps = 2/93 (2%)
Query: 107 VKVSRLLLLSGADANHITEFLGAAPALCLFAHEGNSEMIALLLEFHACIDLANSQGRTPL 166
++ R LL GAD + + + AL L + G ++++ LLLE I++ + G TPL
Sbjct: 49 IETVRFLLEWGADPHILAK--ERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPL 106
Query: 167 SLAAGRGHMEAVRTLVAAGASLGRTDTTGRCAL 199
A H++ V L+A GA L +G +
Sbjct: 107 LYAVHGNHVKCVEALLARGADLTTEADSGYTPM 139
Score = 32.0 bits (71), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 36/76 (47%)
Query: 140 GNSEMIALLLEFHACIDLANSQGRTPLSLAAGRGHMEAVRTLVAAGASLGRTDTTGRCAL 199
G E + LLE+ A + + + LSLA+ G+ + V L+ + D G L
Sbjct: 47 GEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPL 106
Query: 200 VHAARGGHLQNLSPLM 215
++A G H++ + L+
Sbjct: 107 LYAVHGNHVKCVEALL 122
Score = 31.6 bits (70), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 46/119 (38%), Gaps = 32/119 (26%)
Query: 251 AQEGHVGLLELLLDKGADIL-REDGEGLTALSWACMRGRIQAVTYLLD------------ 297
A +G + L+ L KG +++ + D G T L WA G I+ V +LL+
Sbjct: 10 AAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKER 69
Query: 298 -------------------RDRGAMIEHVDINGLRPLDRAISCRNVPVVQCFLRKGAKL 337
+R I D NG PL A+ +V V+ L +GA L
Sbjct: 70 ESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVHGNHVKCVEALLARGADL 128
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 72/169 (42%), Gaps = 24/169 (14%)
Query: 153 ACIDLANSQGRTPLSLAAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLS 212
A ++ N+ +TPL LA E L+ AG D G +
Sbjct: 36 AFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGN---------------T 80
Query: 213 PLMLAVKEGHWATAEKLLQH------HAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKG 266
PL LA ++G A+ L Q H+ L T+ + T L +A+ G++G++ELL+ G
Sbjct: 81 PLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLG 140
Query: 267 ADI-LREDGEGLTALSWACMRGRIQAVTYLLDRDRGAMIEHVDINGLRP 314
AD+ +E G TAL A V+ LL GA + V G P
Sbjct: 141 ADVNAQEPCNGRTALHLAVDLQNPDLVSLLL--KCGADVNRVTYQGYSP 187
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 48/105 (45%), Gaps = 9/105 (8%)
Query: 102 VYSPNVKVSRLLLLSGADANHITEFLGAAPALCLFAHEGNSEMIALLLE------FHACI 155
V + +++ LL +G D + +F G P L L +G + +L + H+ +
Sbjct: 53 VITNQPEIAEALLGAGCDP-ELRDFRGNTP-LHLACEQGCLASVGVLTQSCTTPHLHSIL 110
Query: 156 DLANSQGRTPLSLAAGRGHMEAVRTLVAAGASLGRTD-TTGRCAL 199
N G T L LA+ G++ V LV+ GA + + GR AL
Sbjct: 111 KATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTAL 155
>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures
Length = 168
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 71/156 (45%), Gaps = 21/156 (13%)
Query: 108 KVSRLLLLSGADANHITEFLGAAPALCLFAHEGNSEMIAL-LLEFHACIDLANSQGRTPL 166
+V RLL + + F A + +F S +AL LL+ A ++ ++ G +P+
Sbjct: 25 EVRRLLHRELVHPDALNRFGKTALQVMMFG----SPAVALELLKQGASPNVQDASGTSPV 80
Query: 167 SLAAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPLMLAVKEGHWATA 226
AA G ++ ++ LV GA + D+TG P+ LA++EGH +
Sbjct: 81 HDAARTGFLDTLKVLVEHGADVNALDSTGSL---------------PIHLAIREGHSSVV 125
Query: 227 EKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELL 262
L + L D S TPL +A Q G L+++L
Sbjct: 126 -SFLAPESDLHHRDASGLTPLELARQRGAQNLMDIL 160
>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9
(Hasb9-2), An Ankyrin Repeat Protein
Length = 285
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 61/241 (25%), Positives = 99/241 (41%), Gaps = 35/241 (14%)
Query: 98 SLRNVYSPNVKVSRLLLLSGADANHITEFLGAAPALCLFAHEGNSEMIALLLEFHACIDL 157
SLRN+ S V+ + A+H++ A CL H + +LL+ A ++
Sbjct: 74 SLRNLISQGWAVNIIT------ADHVSPLHEA----CLGGH---LSCVKILLKHGAQVNG 120
Query: 158 ANSQGRTPLSLAAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPLMLA 217
+ TPL A G + V L+ GAS+ SP+ A
Sbjct: 121 VTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLA----------------SPIHEA 164
Query: 218 VKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILREDGEGL 277
+ GH L+ + +D TPL +A + ++ LL+ GAD+ G+G
Sbjct: 165 ARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADV--NQGKGQ 222
Query: 278 TALSWACMRGRIQAVTYLLDRDRGAMIEHVDINGLRPLDRAISCRNVPVVQCFL-RKGAK 336
+ A +R + + LL D GA + + G RP++ + P+ Q FL R+GA
Sbjct: 223 DSPLHAVVRTASEELACLL-MDFGADTQAKNAEGKRPVE--LVPPESPLAQLFLEREGAS 279
Query: 337 L 337
L
Sbjct: 280 L 280
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 72/174 (41%), Gaps = 18/174 (10%)
Query: 164 TPLSLAAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPLMLAVKEGHW 223
+P+ AA GH ++R L++ G ++ ++SPL A GH
Sbjct: 61 SPMHEAAIHGHQLSLRNLISQGWAVNIITA---------------DHVSPLHEACLGGHL 105
Query: 224 ATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILREDGEGLTALSWA 283
+ + LL+H A ++ TPL A G + LLL GA + E + + + A
Sbjct: 106 SCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPES-DLASPIHEA 164
Query: 284 CMRGRIQAVTYLLDRDRGAMIEHVDINGLRPLDRAISCRNVPVVQCFLRKGAKL 337
RG ++ V L+ G I+H + PL A + V+ L GA +
Sbjct: 165 ARRGHVECVNSLI--AYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADV 216
Score = 35.0 bits (79), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 45/108 (41%)
Query: 189 GRTDTTGRCALVHAARGGHLQNLSPLMLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLM 248
G D G L + G + + SP+ A GH + L+ ++ H +PL
Sbjct: 38 GPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLH 97
Query: 249 IAAQEGHVGLLELLLDKGADILREDGEGLTALSWACMRGRIQAVTYLL 296
A GH+ +++LL GA + + T L AC+ G V LL
Sbjct: 98 EACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLL 145
>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX
Length = 166
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 71/156 (45%), Gaps = 21/156 (13%)
Query: 108 KVSRLLLLSGADANHITEFLGAAPALCLFAHEGNSEMIAL-LLEFHACIDLANSQGRTPL 166
+V RLL + + F A + +F S +AL LL+ A ++ ++ G +P+
Sbjct: 23 EVRRLLHRELVHPDALNRFGKTALQVMMFG----SPAVALELLKQGASPNVQDASGTSPV 78
Query: 167 SLAAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPLMLAVKEGHWATA 226
AA G ++ ++ LV GA + D+TG P+ LA++EGH +
Sbjct: 79 HDAARTGFLDTLKVLVEHGADVNALDSTGSL---------------PIHLAIREGHSSVV 123
Query: 227 EKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELL 262
L + L D S TPL +A Q G L+++L
Sbjct: 124 -SFLAPESDLHHRDASGLTPLELARQRGAQNLMDIL 158
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 70/163 (42%), Gaps = 18/163 (11%)
Query: 170 AGRGHMEAVRTLVAAGASLG-RTDTTGRCALVHAARGGHLQNLSPLMLAVKEGHWATAEK 228
A G ++ ++ + A SL RTD R AL A GH + E
Sbjct: 14 AYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTE---------------IVEF 58
Query: 229 LLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILREDGEGLTALSWACMRGR 288
LLQ P++ D + +PL IAA G +++ LL KGA + + G T L +A + R
Sbjct: 59 LLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNR 118
Query: 289 IQAVTYLLDRDRGAMIEHVDINGLRPLDRAISCRNVPVVQCFL 331
+ LL + GA + D + RA + N+ +V L
Sbjct: 119 HEIAVMLL--EGGANPDAKDHYDATAMHRAAAKGNLKMVHILL 159
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 49/109 (44%), Gaps = 2/109 (1%)
Query: 227 EKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILREDGEGLTALSWACMR 286
E++L + +TD +T L A GH ++E LL G + +D G + L A
Sbjct: 24 ERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASA 83
Query: 287 GRIQAVTYLLDRDRGAMIEHVDINGLRPLDRAISCRNVPVVQCFLRKGA 335
GR + V LL + GA + V+ NG PL A S + L GA
Sbjct: 84 GRDEIVKALLVK--GAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGA 130
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 62/151 (41%), Gaps = 15/151 (9%)
Query: 133 LCLFAHEGNSEMIALLLEFHACIDLANSQGRTPLSLAAGRGHMEAVRTLVAAGASLGRTD 192
L + A G E++ LL A ++ N G TPL AA + E L+ GA+ D
Sbjct: 77 LHIAASAGRDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKD 136
Query: 193 TTGRCALVHAARGGHLQNLSPLMLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQ 252
A+ AA G+L+ + L+ + A + D TPL +A
Sbjct: 137 HYDATAMHRAAAKGNLKMVHILLF---------------YKASTNIQDTEGNTPLHLACD 181
Query: 253 EGHVGLLELLLDKGADILREDGEGLTALSWA 283
E V + L+ +GA I E+ E T L A
Sbjct: 182 EERVEEAKFLVTQGASIYIENKEEKTPLQVA 212
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 53/99 (53%), Gaps = 3/99 (3%)
Query: 108 KVSRLLLLSGADANHITEFLGAAPALCLFAHEGNSEMIALLLEFHACIDLANSQGRTPLS 167
+++ +LL GA+ + + A A+ A +GN +M+ +LL + A ++ +++G TPL
Sbjct: 120 EIAVMLLEGGANPDAKDHY--DATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLH 177
Query: 168 LAAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGG 206
LA +E + LV GAS+ + + L A+GG
Sbjct: 178 LACDEERVEEAKFLVTQGASIYIENKEEKTPL-QVAKGG 215
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 70/163 (42%), Gaps = 18/163 (11%)
Query: 170 AGRGHMEAVRTLVAAGASLG-RTDTTGRCALVHAARGGHLQNLSPLMLAVKEGHWATAEK 228
A G ++ ++ + A SL RTD R AL A GH + E
Sbjct: 14 AYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTE---------------IVEF 58
Query: 229 LLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILREDGEGLTALSWACMRGR 288
LLQ P++ D + +PL IAA G +++ LL KGA + + G T L +A + R
Sbjct: 59 LLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNR 118
Query: 289 IQAVTYLLDRDRGAMIEHVDINGLRPLDRAISCRNVPVVQCFL 331
+ LL + GA + D + RA + N+ +V L
Sbjct: 119 HEIAVMLL--EGGANPDAKDHYDATAMHRAAAKGNLKMVHILL 159
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 62/151 (41%), Gaps = 15/151 (9%)
Query: 133 LCLFAHEGNSEMIALLLEFHACIDLANSQGRTPLSLAAGRGHMEAVRTLVAAGASLGRTD 192
L + A G E++ LL A ++ N G TPL AA + E L+ GA+ D
Sbjct: 77 LHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKD 136
Query: 193 TTGRCALVHAARGGHLQNLSPLMLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQ 252
A+ AA G+L+ + L+ + A + D TPL +A
Sbjct: 137 HYDATAMHRAAAKGNLKMVHILLF---------------YKASTNIQDTEGNTPLHLACD 181
Query: 253 EGHVGLLELLLDKGADILREDGEGLTALSWA 283
E V + L+ +GA I E+ E T L A
Sbjct: 182 EERVEEAKFLVTQGASIYIENKEEKTPLQVA 212
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 53/99 (53%), Gaps = 3/99 (3%)
Query: 108 KVSRLLLLSGADANHITEFLGAAPALCLFAHEGNSEMIALLLEFHACIDLANSQGRTPLS 167
+++ +LL GA+ + + A A+ A +GN +M+ +LL + A ++ +++G TPL
Sbjct: 120 EIAVMLLEGGANPDAKDHY--DATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLH 177
Query: 168 LAAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGG 206
LA +E + LV GAS+ + + L A+GG
Sbjct: 178 LACDEERVEEAKFLVTQGASIYIENKEEKTPL-QVAKGG 215
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 48/109 (44%), Gaps = 2/109 (1%)
Query: 227 EKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILREDGEGLTALSWACMR 286
E++L + +TD +T L A GH ++E LL G + +D G + L A
Sbjct: 24 ERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASA 83
Query: 287 GRIQAVTYLLDRDRGAMIEHVDINGLRPLDRAISCRNVPVVQCFLRKGA 335
G + V LL + GA + V+ NG PL A S + L GA
Sbjct: 84 GXDEIVKALLVK--GAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGA 130
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 42.7 bits (99), Expect = 3e-04, Method: Composition-based stats.
Identities = 24/67 (35%), Positives = 38/67 (56%)
Query: 214 LMLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILRED 273
L+ A + G L+ + A ++ D TPL +AA+EGH+ ++E+LL GAD+ +D
Sbjct: 6 LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQD 65
Query: 274 GEGLTAL 280
G TA
Sbjct: 66 KFGKTAF 72
Score = 42.0 bits (97), Expect = 5e-04, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 33/63 (52%)
Query: 137 AHEGNSEMIALLLEFHACIDLANSQGRTPLSLAAGRGHMEAVRTLVAAGASLGRTDTTGR 196
A G + + +L+ A ++ + G TPL LAA GH+E V L+ AGA + D G+
Sbjct: 10 ARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGK 69
Query: 197 CAL 199
A
Sbjct: 70 TAF 72
Score = 38.5 bits (88), Expect = 0.005, Method: Composition-based stats.
Identities = 30/94 (31%), Positives = 41/94 (43%), Gaps = 15/94 (15%)
Query: 169 AAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPLMLAVKEGHWATAEK 228
AA G + VR L+A GA + D G +PL LA +EGH E
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDG---------------YTPLHLAAREGHLEIVEV 53
Query: 229 LLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELL 262
LL+ A ++ D KT I+ G+ L E+L
Sbjct: 54 LLKAGADVNAQDKFGKTAFDISIDNGNEDLAEIL 87
Score = 28.9 bits (63), Expect = 4.4, Method: Composition-based stats.
Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Query: 111 RLLLLSGADANHITEFLGAAPALCLFAHEGNSEMIALLLEFHACIDLANSQGRTPLSLAA 170
R+L+ +GAD N + G P L L A EG+ E++ +LL+ A ++ + G+T ++
Sbjct: 19 RILMANGADVN-AKDKDGYTP-LHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDISI 76
Query: 171 GRGHMEAVRTLVAAG 185
G+ + L A
Sbjct: 77 DNGNEDLAEILQKAA 91
>pdb|1YMP|A Chain A, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
pdb|1YMP|B Chain B, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
Length = 135
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 51/120 (42%), Gaps = 18/120 (15%)
Query: 161 QGRTPLSLAAGRGHMEAVRTLVAAGASLGRTDTTGRCAL---------------VHAARG 205
G TPL LAA + L+ + A + D G+ AL +
Sbjct: 14 DGTTPLILAARLALEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGAN 73
Query: 206 GHLQN---LSPLMLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELL 262
+QN +PL LA +EG + TA+ LL H A D TD + P IA + H ++ LL
Sbjct: 74 KDMQNNKEETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLL 133
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 25/49 (51%)
Query: 133 LCLFAHEGNSEMIALLLEFHACIDLANSQGRTPLSLAAGRGHMEAVRTL 181
L L A EG+ E +LL+ A D+ + R P +A R H + VR L
Sbjct: 85 LFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLL 133
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 27/43 (62%), Gaps = 2/43 (4%)
Query: 240 DGSHKTPLMIAAQEGHVGLLELLLDKGADILREDGEGLTALSW 282
DG+ TPL++AA+ G+LE L++ AD+ D G +AL W
Sbjct: 14 DGT--TPLILAARLALEGMLEDLINSHADVNAVDDLGKSALHW 54
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 25/50 (50%)
Query: 148 LLEFHACIDLANSQGRTPLSLAAGRGHMEAVRTLVAAGASLGRTDTTGRC 197
LL+ A D+ N++ TPL LAA G E + L+ A+ TD R
Sbjct: 67 LLKNGANKDMQNNKEETPLFLAAREGSYETAKVLLDHFANRDITDHMDRL 116
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 33/63 (52%)
Query: 137 AHEGNSEMIALLLEFHACIDLANSQGRTPLSLAAGRGHMEAVRTLVAAGASLGRTDTTGR 196
A G + + +L+ A + + G TPL LAA GH+E V+ L+ AGA + D G+
Sbjct: 14 ARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDKFGK 73
Query: 197 CAL 199
A
Sbjct: 74 TAF 76
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 40/76 (52%)
Query: 213 PLMLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILRE 272
L+ A + G L+ + A + D + TPL +AA+ GH+ +++LLL+ GAD+ +
Sbjct: 9 KLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQ 68
Query: 273 DGEGLTALSWACMRGR 288
D G TA + G
Sbjct: 69 DKFGKTAFDISIDNGN 84
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 40/94 (42%), Gaps = 15/94 (15%)
Query: 169 AAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPLMLAVKEGHWATAEK 228
AA G + VR L+A GA + D G L AAR GHL+ +
Sbjct: 13 AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLE---------------VVKL 57
Query: 229 LLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELL 262
LL+ A ++ D KT I+ G+ L E+L
Sbjct: 58 LLEAGADVNAQDKFGKTAFDISIDNGNEDLAEIL 91
Score = 28.5 bits (62), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Query: 111 RLLLLSGADANHITEFLGAAPALCLFAHEGNSEMIALLLEFHACIDLANSQGRTPLSLAA 170
R+L+ +GAD + G+ P L L A G+ E++ LLLE A ++ + G+T ++
Sbjct: 23 RILMANGADV-AAKDKNGSTP-LHLAARNGHLEVVKLLLEAGADVNAQDKFGKTAFDISI 80
Query: 171 GRGHMEAVRTL 181
G+ + L
Sbjct: 81 DNGNEDLAEIL 91
>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats
Length = 276
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 69/158 (43%), Gaps = 21/158 (13%)
Query: 144 MIALLLEFHACIDLANSQGRTPLSLAAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHAA 203
M A LL++ +++A+S G T L + + V+ L+ +G C +
Sbjct: 95 MSARLLDY--VVNIADSNGNTALHYSVSHANFPVVQQLLDSGV----------CKVDKQN 142
Query: 204 RGGHLQNLSPLMLAV-----KEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGL 258
R G+ SP+ML + T +L + + + +T LM+A G V +
Sbjct: 143 RAGY----SPIMLTALATLKTQDDIETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDV 198
Query: 259 LELLLDKGADILREDGEGLTALSWACMRGRIQAVTYLL 296
++ LL AD+ +D +G TAL AC G + LL
Sbjct: 199 VKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLL 236
>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
pdb|3ZKJ|D Chain D, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
Length = 261
Score = 41.2 bits (95), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 57/236 (24%), Positives = 94/236 (39%), Gaps = 34/236 (14%)
Query: 98 SLRNVYSPNVKVSRLLLLSGADANHITEFLGAAPALCLFAHEGNSEMIALLLEFHACIDL 157
SLRN+ S V+ + A+H++ A CL H + +LL+ A ++
Sbjct: 18 SLRNLISQGWAVNII------TADHVSPLHEA----CLGGH---LSCVKILLKHGAQVNG 64
Query: 158 ANSQGRTPLSLAAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPLMLA 217
+ TPL A G + V L+ GAS+ SP+ A
Sbjct: 65 VTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLA----------------SPIHEA 108
Query: 218 VKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILREDGEGL 277
+ GH L+ + +D TPL +A + ++ LL+ GAD+ G+G
Sbjct: 109 ARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADV--NQGKGQ 166
Query: 278 TALSWACMRGRIQAVTYLLDRDRGAMIEHVDINGLRPLDRAISCRNVPVVQCFLRK 333
+ A R + + LL D GA + + G RP++ + P+ Q FL +
Sbjct: 167 DSPLHAVARTASEELACLL-MDFGADTQAKNAEGKRPVE--LVPPESPLAQLFLER 219
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 73/174 (41%), Gaps = 18/174 (10%)
Query: 164 TPLSLAAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPLMLAVKEGHW 223
+P+ AA GH ++R L++ G ++ ++SPL A GH
Sbjct: 5 SPMHEAAIHGHQLSLRNLISQGWAVNIITA---------------DHVSPLHEACLGGHL 49
Query: 224 ATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILREDGEGLTALSWA 283
+ + LL+H A ++ TPL A G + LLL GA + + + + + + A
Sbjct: 50 SCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASV-QPESDLASPIHEA 108
Query: 284 CMRGRIQAVTYLLDRDRGAMIEHVDINGLRPLDRAISCRNVPVVQCFLRKGAKL 337
RG ++ V L+ G I+H + PL A + V+ L GA +
Sbjct: 109 ARRGHVECVNSLI--AYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADV 160
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 39/89 (43%)
Query: 208 LQNLSPLMLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGA 267
+ + SP+ A GH + L+ ++ H +PL A GH+ +++LL GA
Sbjct: 1 MSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGA 60
Query: 268 DILREDGEGLTALSWACMRGRIQAVTYLL 296
+ + T L AC+ G V LL
Sbjct: 61 QVNGVTADWHTPLFNACVSGSWDCVNLLL 89
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 41.2 bits (95), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Query: 106 NVKVSRLLLLSGADANHITEFLGAAPALCLFAHEGNSEMIALLLEFHACIDLANSQGRTP 165
N +++R LLL GA+ + + + G A + A G + + LLEF A +++ +++G P
Sbjct: 49 NPEIARRLLLRGANPD-LKDRTGFA-VIHDAARAGQLDTLQTLLEFQADVNIEDNEGNLP 106
Query: 166 LSLAAGRGHMEAVRTLVAAGAS 187
L LAA GH+ V LV AS
Sbjct: 107 LHLAAKEGHLRVVEFLVKHTAS 128
Score = 35.4 bits (80), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 58/131 (44%), Gaps = 16/131 (12%)
Query: 166 LSLAAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPLMLAVKEGHWAT 225
L+ AA RG +E + +L+ ++ + GR AL +K G+
Sbjct: 9 LASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQ----------------VMKLGNPEI 52
Query: 226 AEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILREDGEGLTALSWACM 285
A +LL A D D + + AA+ G + L+ LL+ AD+ ED EG L A
Sbjct: 53 ARRLLLRGANPDLKDRTGFAVIHDAARAGQLDTLQTLLEFQADVNIEDNEGNLPLHLAAK 112
Query: 286 RGRIQAVTYLL 296
G ++ V +L+
Sbjct: 113 EGHLRVVEFLV 123
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 33/63 (52%)
Query: 137 AHEGNSEMIALLLEFHACIDLANSQGRTPLSLAAGRGHMEAVRTLVAAGASLGRTDTTGR 196
A G + + +L+ A + + G TPL LAA GH+E V+ L+ AGA + D G+
Sbjct: 32 ARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGK 91
Query: 197 CAL 199
A
Sbjct: 92 TAF 94
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Query: 204 RGGHLQNL--SPLMLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLEL 261
RG H+ + L+ A + G L+ + A + D + TPL +AA+ GH+ +++L
Sbjct: 16 RGSHMGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKL 75
Query: 262 LLDKGADILREDGEGLTALSWACMRG 287
LL+ GAD+ +D G TA + G
Sbjct: 76 LLEAGADVXAQDKFGKTAFDISIDNG 101
Score = 32.0 bits (71), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 39/94 (41%), Gaps = 15/94 (15%)
Query: 169 AAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPLMLAVKEGHWATAEK 228
AA G + VR L+A GA + D G L AAR GHL+ +
Sbjct: 31 AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLE---------------VVKL 75
Query: 229 LLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELL 262
LL+ A + D KT I+ G+ L E+L
Sbjct: 76 LLEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 71/299 (23%), Positives = 116/299 (38%), Gaps = 37/299 (12%)
Query: 22 GESNKFLCDLRAGHAGIAFRLSRLQAPLDADKSLELGHHILKAHVY--------KNMTLV 73
G N FL D F + LQ P + + + H A Y +++ ++
Sbjct: 70 GNGNDFLGD---------FNHTNLQIPTEPEPESPIKLHTEAAGSYAITEPITRESVNII 120
Query: 74 KYSSRDLQAHWISSVCQSPAQALCSLRNVYSPNVKVSRLLLLSGADANHITEFLGAAPAL 133
HWI+S S A+ L V ++ + +GAD N L
Sbjct: 121 DPRHNRTVLHWIAS--NSSAEKSEDLI------VHEAKECIAAGADVNAXDCDENTPLXL 172
Query: 134 CLFAHEGNSEMIALLLEFHACIDLANSQGRTPL-SLAAGRGHMEAVRTLVAAG--ASLGR 190
+ A ++A L + A + N R+ L AA R V L + +
Sbjct: 173 AVLARR--RRLVAYLXKAGADPTIYNKSERSALHQAAANRDFGXXVYXLNSTKLKGDIEE 230
Query: 191 TDTTGRCALVHAARGGHLQNLSPLMLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIA 250
D G AL A ++ L V++G A+ A D +T L A
Sbjct: 231 LDRNGXTALXIVAHNEGRDQVASAKLLVEKG----AKVDYDGAARKDSEKYKGRTALHYA 286
Query: 251 AQEGHVGLLELLL-DKGADILREDGEGLTALSWACMRGRIQAVTYLLDRDRGAMIEHVD 308
AQ + +++ L+ +KG++ ++D +G T + A GRI+ V YL+ +GA +E VD
Sbjct: 287 AQVSNXPIVKYLVGEKGSNKDKQDEDGKTPIXLAAQEGRIEVVXYLI--QQGASVEAVD 343
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 47/108 (43%), Gaps = 7/108 (6%)
Query: 107 VKVSRLLLLSGADANHI------TEFLGAAPALCLFAHEGNSEMIALLL-EFHACIDLAN 159
V ++LL+ GA ++ +E AL A N ++ L+ E + D +
Sbjct: 251 VASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNXPIVKYLVGEKGSNKDKQD 310
Query: 160 SQGRTPLSLAAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGH 207
G+TP+ LAA G +E V L+ GAS+ D T A A H
Sbjct: 311 EDGKTPIXLAAQEGRIEVVXYLIQQGASVEAVDATDHTARQLAQANNH 358
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 63/140 (45%), Gaps = 25/140 (17%)
Query: 155 IDLANSQGRTPLSLAA---GRGHMEAVRTLVAAGASL-----GRTDT---TGRCALVHAA 203
I+ + G T L + A GR + + + LV GA + R D+ GR AL +AA
Sbjct: 228 IEELDRNGXTALXIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAA 287
Query: 204 RGGHLQNLSPLMLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLL 263
+ + P++ + EK + D+ D KTP+ +AAQEG + ++ L+
Sbjct: 288 QVSN----XPIV------KYLVGEK----GSNKDKQDEDGKTPIXLAAQEGRIEVVXYLI 333
Query: 264 DKGADILREDGEGLTALSWA 283
+GA + D TA A
Sbjct: 334 QQGASVEAVDATDHTARQLA 353
Score = 36.6 bits (83), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 59/143 (41%), Gaps = 27/143 (18%)
Query: 132 ALCLFAHEGNSEMIA---LLLEFHACIDLANS--------QGRTPLSLAAGRGHMEAVRT 180
AL + AH + +A LL+E A +D + +GRT L AA + V+
Sbjct: 238 ALXIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNXPIVKY 297
Query: 181 LVA-AGASLGRTDTTGRCALVHAARGGHLQNLSPLMLAVKEGHWATAEKLLQHHAPLDQT 239
LV G++ + D G+ +P+ LA +EG L+Q A ++
Sbjct: 298 LVGEKGSNKDKQDEDGK---------------TPIXLAAQEGRIEVVXYLIQQGASVEAV 342
Query: 240 DGSHKTPLMIAAQEGHVGLLELL 262
D + T +A H ++++
Sbjct: 343 DATDHTARQLAQANNHHNIVDIF 365
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Query: 106 NVKVSRLLLLSGADANHITEFLGAAPALCLFAHEGNSEMIALLLEFHACIDLANSQGRTP 165
N +++R LLL GA+ + + + G A + A G + + LLEF A +++ +++G P
Sbjct: 49 NPEIARRLLLRGANPD-LKDRTGNA-VIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLP 106
Query: 166 LSLAAGRGHMEAVRTLVAAGAS 187
L LAA GH+ V LV AS
Sbjct: 107 LHLAAKEGHLRVVEFLVKHTAS 128
Score = 36.2 bits (82), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 58/131 (44%), Gaps = 16/131 (12%)
Query: 166 LSLAAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPLMLAVKEGHWAT 225
L+ AA RG +E + +L+ ++ + GR AL +K G+
Sbjct: 9 LASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQ----------------VMKLGNPEI 52
Query: 226 AEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILREDGEGLTALSWACM 285
A +LL A D D + + AA+ G + L+ LL+ AD+ ED EG L A
Sbjct: 53 ARRLLLRGANPDLKDRTGNAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAK 112
Query: 286 RGRIQAVTYLL 296
G ++ V +L+
Sbjct: 113 EGHLRVVEFLV 123
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Query: 106 NVKVSRLLLLSGADANHITEFLGAAPALCLFAHEGNSEMIALLLEFHACIDLANSQGRTP 165
N +++R LLL GA+ + + + G A + A G + + LLEF A +++ +++G P
Sbjct: 49 NPEIARRLLLRGANPD-LKDRTGFA-VIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLP 106
Query: 166 LSLAAGRGHMEAVRTLVAAGAS 187
L LAA GH+ V LV AS
Sbjct: 107 LHLAAKEGHLRVVEFLVKHTAS 128
Score = 35.0 bits (79), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 58/131 (44%), Gaps = 16/131 (12%)
Query: 166 LSLAAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPLMLAVKEGHWAT 225
L+ AA RG +E + +L+ ++ + GR AL +K G+
Sbjct: 9 LASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQ----------------VMKLGNPEI 52
Query: 226 AEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILREDGEGLTALSWACM 285
A +LL A D D + + AA+ G + L+ LL+ AD+ ED EG L A
Sbjct: 53 ARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAK 112
Query: 286 RGRIQAVTYLL 296
G ++ V +L+
Sbjct: 113 EGHLRVVEFLV 123
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Query: 106 NVKVSRLLLLSGADANHITEFLGAAPALCLFAHEGNSEMIALLLEFHACIDLANSQGRTP 165
N +++R LLL GA+ + + + G A + A G + + LLEF A +++ +++G P
Sbjct: 49 NPEIARRLLLRGANPD-LKDRTGFA-VIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLP 106
Query: 166 LSLAAGRGHMEAVRTLVAAGAS 187
L LAA GH+ V LV AS
Sbjct: 107 LHLAAKEGHLRVVEFLVKHTAS 128
Score = 35.0 bits (79), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 58/131 (44%), Gaps = 16/131 (12%)
Query: 166 LSLAAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPLMLAVKEGHWAT 225
L+ AA RG +E + +L+ ++ + GR AL +K G+
Sbjct: 9 LASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQ----------------VMKLGNPEI 52
Query: 226 AEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILREDGEGLTALSWACM 285
A +LL A D D + + AA+ G + L+ LL+ AD+ ED EG L A
Sbjct: 53 ARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAK 112
Query: 286 RGRIQAVTYLL 296
G ++ V +L+
Sbjct: 113 EGHLRVVEFLV 123
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 48/110 (43%), Gaps = 15/110 (13%)
Query: 140 GNSEMIALLLEFHACIDLANSQGRTPLSLAAGRGHMEAVRTLVAAGASLGRTDTTGRCAL 199
G++E + LLE A I+ AN G T L A +++ V+ LV GA++ + D G L
Sbjct: 51 GDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPL 110
Query: 200 VHAARGGHLQNLSPLMLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMI 249
AA G+L AE L+ A + + TPL I
Sbjct: 111 HAAASCGYLD---------------IAEYLISQGAHVGAVNSEGDTPLDI 145
Score = 35.4 bits (80), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 45/89 (50%), Gaps = 2/89 (2%)
Query: 228 KLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILREDGEGLTALSWACMRG 287
+LL+ A ++ + T L A + +V +++ L++ GA+I + D EG L A G
Sbjct: 58 RLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCG 117
Query: 288 RIQAVTYLLDRDRGAMIEHVDINGLRPLD 316
+ YL+ +GA + V+ G PLD
Sbjct: 118 YLDIAEYLI--SQGAHVGAVNSEGDTPLD 144
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 44/104 (42%), Gaps = 14/104 (13%)
Query: 164 TPLSLAAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPLMLAVKEGHW 223
PL AA RG++ +R + + D G AL A GGH + L
Sbjct: 75 NPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEXL--------- 125
Query: 224 ATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGA 267
Q + L+Q + T L AA +G+ +++LLL KGA
Sbjct: 126 -----FTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGA 164
Score = 31.2 bits (69), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 39/95 (41%), Gaps = 1/95 (1%)
Query: 242 SHKTPLMIAAQEGHVGLLELLLDKGADILREDGEGLTALSWACMRGRIQAVTYLLDRDRG 301
S PL AA+ G++ L LD + D G TAL WAC G V L +
Sbjct: 72 SIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEXLFTQPNI 131
Query: 302 AMIEHVDINGLRPLDRAISCRNVPVVQCFLRKGAK 336
+ + + G L A +VQ L KGA+
Sbjct: 132 ELNQQNKL-GDTALHAAAWKGYADIVQLLLAKGAR 165
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 36.2 bits (82), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Query: 106 NVKVSRLLLLSGADANHITEFLGAAPALCLFAHEGNSEMIALLLEFHACIDLANSQGRTP 165
N +++R LLL GA+ + + + G A + A G + + LLE A +++ +++G P
Sbjct: 49 NPEIARRLLLRGANPD-LKDRTGFA-VIHDAARAGFLDTLQTLLENQADVNIEDNEGNLP 106
Query: 166 LSLAAGRGHMEAVRTLVAAGAS 187
L LAA GH+ V LV AS
Sbjct: 107 LHLAAKEGHLRVVEFLVKHTAS 128
Score = 36.2 bits (82), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 58/131 (44%), Gaps = 16/131 (12%)
Query: 166 LSLAAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPLMLAVKEGHWAT 225
L+ AA RG +E + +L+ ++ + GR AL +K G+
Sbjct: 9 LASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQ----------------VMKLGNPEI 52
Query: 226 AEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILREDGEGLTALSWACM 285
A +LL A D D + + AA+ G + L+ LL+ AD+ ED EG L A
Sbjct: 53 ARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLENQADVNIEDNEGNLPLHLAAK 112
Query: 286 RGRIQAVTYLL 296
G ++ V +L+
Sbjct: 113 EGHLRVVEFLV 123
>pdb|3UI2|A Chain A, Crystal Structure Of The Cpsrp54 Tail Bound To Cpsrp43
Length = 244
Score = 35.4 bits (80), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Query: 137 AHEGNSEMIALLLEFHACIDLANSQGRTPLSLAAGRGHMEAVRTLVAAGASLGRTDTTGR 196
A + + + ++ LLE +D + GRT L AG G + VR L AGA L D G
Sbjct: 53 ARKADEQALSQLLEDRD-VDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGG 111
Query: 197 CALVHAARG 205
+H A G
Sbjct: 112 LTALHMAAG 120
>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp
Length = 229
Score = 35.0 bits (79), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 47/100 (47%), Gaps = 2/100 (2%)
Query: 247 LMIAAQEGHVGLLELLLDKGADILREDGEGLTALSWACMRGRIQAVTYLLDRDRGAMIEH 306
L+ AA G + +++ + + D + + EG+TAL A V +L+ GA +
Sbjct: 25 LLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLI--TAGANVNS 82
Query: 307 VDINGLRPLDRAISCRNVPVVQCFLRKGAKLGPTTWSMAA 346
D +G PL A SC + + ++ GA + TT S A
Sbjct: 83 PDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGA 122
>pdb|3DEO|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
pdb|3DEP|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
Length = 183
Score = 35.0 bits (79), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Query: 137 AHEGNSEMIALLLEFHACIDLANSQGRTPLSLAAGRGHMEAVRTLVAAGASLGRTDTTGR 196
A + + + ++ LLE +D + GRT L AG G + VR L AGA L D G
Sbjct: 52 ARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGG 110
Query: 197 CALVHAARG 205
+H A G
Sbjct: 111 LTALHMAAG 119
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 34.7 bits (78), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 62/143 (43%), Gaps = 17/143 (11%)
Query: 140 GNSEMIALLLEFHACIDL--ANSQGRTPLSLAAGRGHMEAVRTLVAAGASLGRTDTTGRC 197
GN E++ L + DL +QG T L LA G+ E + L+ GAS+ D +
Sbjct: 83 GNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQI 142
Query: 198 ALVHAARGGHLQNLSPLMLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVG 257
L AA G L+ L L+ + + + ++ D TPL A EGH
Sbjct: 143 PLHRAASVGSLK-LIELLCGLGK-------------SAVNWQDKQGWTPLFHALAEGHGD 188
Query: 258 LLELLLDK-GADILREDGEGLTA 279
LL++K GA+ D +G A
Sbjct: 189 AAVLLVEKYGAEYDLVDNKGAKA 211
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 43/98 (43%), Gaps = 9/98 (9%)
Query: 260 ELLLDKGADILREDGEGLTALSWACMRGRIQAVTYLLDRDRGAMI-EHVDINGLRPLDRA 318
ELL K + +L++D +G L W+ + ++LL + + ++ D +G P A
Sbjct: 20 ELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIA 79
Query: 319 ISCRNVPVVQCF--------LRKGAKLGPTTWSMAAGK 348
S N+ VV+ L K G T +A GK
Sbjct: 80 CSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGK 117
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 34.7 bits (78), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 62/143 (43%), Gaps = 17/143 (11%)
Query: 140 GNSEMIALLLEFHACIDL--ANSQGRTPLSLAAGRGHMEAVRTLVAAGASLGRTDTTGRC 197
GN E++ L + DL +QG T L LA G+ E + L+ GAS+ D +
Sbjct: 83 GNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQI 142
Query: 198 ALVHAARGGHLQNLSPLMLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVG 257
L AA G L+ L L+ + + + ++ D TPL A EGH
Sbjct: 143 PLHRAASVGSLK-LIELLCGLGK-------------SAVNWQDKQGWTPLFHALAEGHGD 188
Query: 258 LLELLLDK-GADILREDGEGLTA 279
LL++K GA+ D +G A
Sbjct: 189 AAVLLVEKYGAEYDLVDNKGAKA 211
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 43/98 (43%), Gaps = 9/98 (9%)
Query: 260 ELLLDKGADILREDGEGLTALSWACMRGRIQAVTYLLDRDRGAMI-EHVDINGLRPLDRA 318
ELL K + +L++D +G L W+ + ++LL + + ++ D +G P A
Sbjct: 20 ELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIA 79
Query: 319 ISCRNVPVVQCF--------LRKGAKLGPTTWSMAAGK 348
S N+ VV+ L K G T +A GK
Sbjct: 80 CSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGK 117
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 34.7 bits (78), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 62/143 (43%), Gaps = 17/143 (11%)
Query: 140 GNSEMIALLLEFHACIDL--ANSQGRTPLSLAAGRGHMEAVRTLVAAGASLGRTDTTGRC 197
GN E++ L + DL +QG T L LA G+ E + L+ GAS+ D +
Sbjct: 83 GNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQI 142
Query: 198 ALVHAARGGHLQNLSPLMLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVG 257
L AA G L+ L L+ + + + ++ D TPL A EGH
Sbjct: 143 PLHRAASVGSLK-LIELLCGLGK-------------SAVNWQDKQGWTPLFHALAEGHGD 188
Query: 258 LLELLLDK-GADILREDGEGLTA 279
LL++K GA+ D +G A
Sbjct: 189 AAVLLVEKYGAEYDLVDNKGAKA 211
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 44/98 (44%), Gaps = 9/98 (9%)
Query: 260 ELLLDKGADILREDGEGLTALSWACMRGRIQAVTYLLDR-DRGAMIEHVDINGLRPLDRA 318
ELL K + +L++D +G L W+ + ++LL + + + ++ D +G P A
Sbjct: 20 ELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIA 79
Query: 319 ISCRNVPVVQCF--------LRKGAKLGPTTWSMAAGK 348
S N+ VV+ L K G T +A GK
Sbjct: 80 CSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGK 117
>pdb|2ETA|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of The
Trpv2
pdb|2ETA|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of The
Trpv2
pdb|2ETB|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
Length = 256
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 67/158 (42%), Gaps = 21/158 (13%)
Query: 161 QGRTPLSLAAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPLMLAVKE 220
QG + L +A + ++ V+ LV GA + GR H + L PL LA
Sbjct: 89 QGHSALHIAIEKRSLQCVKLLVENGADV-HLRACGRFFQKHQGTCFYFGEL-PLSLAACT 146
Query: 221 GHWATAEKLLQH-HAP--LDQTDGSHKTPL----MIAAQEGH-----VGLLELLLDKGAD 268
W LL++ H P L+ TD T L MIA + + + LL GA
Sbjct: 147 KQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGAR 206
Query: 269 I-----LRE--DGEGLTALSWACMRGRIQAVTYLLDRD 299
+ L E + +GLT L A G+I+ ++L R+
Sbjct: 207 LCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQRE 244
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%)
Query: 132 ALCLFAHEGNSEMIALLLEFHACIDLANSQGRTPLSLAAGRGHMEAVRTLV 182
AL + ++G +M A L +++N QG TPL LAA G +E R ++
Sbjct: 191 ALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHIL 241
>pdb|2ETC|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
pdb|2ETC|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
Length = 274
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 67/158 (42%), Gaps = 21/158 (13%)
Query: 161 QGRTPLSLAAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPLMLAVKE 220
QG + L +A + ++ V+ LV GA + GR H + L PL LA
Sbjct: 102 QGHSALHIAIEKRSLQCVKLLVENGADV-HLRACGRFFQKHQGTCFYFGEL-PLSLAACT 159
Query: 221 GHWATAEKLLQH-HAP--LDQTDGSHKTPL----MIAAQEGH-----VGLLELLLDKGAD 268
W LL++ H P L+ TD T L MIA + + + LL GA
Sbjct: 160 KQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGAR 219
Query: 269 I-----LRE--DGEGLTALSWACMRGRIQAVTYLLDRD 299
+ L E + +GLT L A G+I+ ++L R+
Sbjct: 220 LCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQRE 257
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%)
Query: 132 ALCLFAHEGNSEMIALLLEFHACIDLANSQGRTPLSLAAGRGHMEAVRTLV 182
AL + ++G +M A L +++N QG TPL LAA G +E R ++
Sbjct: 204 ALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHIL 254
>pdb|1BI7|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structure Of The Cdk6-P16ink4a Tumor Suppressor
Complex
Length = 156
Score = 32.3 bits (72), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Query: 106 NVKVSRLLLLSGADANHITEFLGAAPALCLFAHEGNSEMIALLLEFHACIDLANSQGRTP 165
+ +V+ LLLL GA+ N P + A EG + + +L A +D+ ++ GR P
Sbjct: 56 SARVAELLLLHGAEPNCADPATLTRP-VHDAAREGFLDTLVVLHRAGARLDVRDAWGRLP 114
Query: 166 LSLAAGRGHMEAVRTL-VAAGASLG 189
+ LA GH + R L AAG + G
Sbjct: 115 VDLAEELGHRDVARYLRAAAGGTRG 139
Score = 31.6 bits (70), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 57/131 (43%), Gaps = 17/131 (12%)
Query: 166 LSLAAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPLMLAVKEGHWAT 225
L+ AA RG +E VR L+ AGA+ ++ GR + + +M+ G
Sbjct: 16 LATAAARGRVEEVRALLEAGANPNAPNSYGR------------RPIQVMMM----GSARV 59
Query: 226 AEKLLQHHAPLDQTDGSHKT-PLMIAAQEGHVGLLELLLDKGADILREDGEGLTALSWAC 284
AE LL H A + D + T P+ AA+EG + L +L GA + D G + A
Sbjct: 60 AELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAE 119
Query: 285 MRGRIQAVTYL 295
G YL
Sbjct: 120 ELGHRDVARYL 130
>pdb|1DC2|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a, 20
Structures
pdb|1A5E|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a, 18
Structures
pdb|2A5E|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a,
Restrained Minimized Mean Structure
Length = 156
Score = 32.3 bits (72), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Query: 106 NVKVSRLLLLSGADANHITEFLGAAPALCLFAHEGNSEMIALLLEFHACIDLANSQGRTP 165
+ +V+ LLLL GA+ N P + A EG + + +L A +D+ ++ GR P
Sbjct: 56 SARVAELLLLHGAEPNCADPATLTRP-VHDAAREGFLDTLVVLHRAGARLDVRDAWGRLP 114
Query: 166 LSLAAGRGHMEAVRTL-VAAGASLG 189
+ LA GH + R L AAG + G
Sbjct: 115 VDLAEELGHRDVARYLRAAAGGTRG 139
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 56/131 (42%), Gaps = 17/131 (12%)
Query: 166 LSLAAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPLMLAVKEGHWAT 225
L+ AA RG +E VR L+ AGA ++ GR + + +M+ G
Sbjct: 16 LATAAARGRVEEVRALLEAGALPNAPNSYGR------------RPIQVMMM----GSARV 59
Query: 226 AEKLLQHHAPLDQTDGSHKT-PLMIAAQEGHVGLLELLLDKGADILREDGEGLTALSWAC 284
AE LL H A + D + T P+ AA+EG + L +L GA + D G + A
Sbjct: 60 AELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAE 119
Query: 285 MRGRIQAVTYL 295
G YL
Sbjct: 120 ELGHRDVARYL 130
>pdb|1D9S|A Chain A, Tumor Suppressor P15(Ink4b) Structure By Comparative
Modeling And Nmr Data
Length = 136
Score = 32.3 bits (72), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 106 NVKVSRLLLLSGADANHITEFLGAAPALCLFAHEGNSEMIALLLEFHACIDLANSQGRTP 165
+ +V+ LLLL GA+ N P + A EG + + +L A +D+ ++ GR P
Sbjct: 56 SAQVAELLLLHGAEPNCADPATLTRP-VHDAAREGFLDTLVVLHRAGARLDVCDAWGRLP 114
Query: 166 LSLAAGRGHMEAVRTLVAA 184
+ LA +GH + R L AA
Sbjct: 115 VDLAEEQGHRDIARYLHAA 133
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 48/103 (46%), Gaps = 4/103 (3%)
Query: 106 NVKVSRLLLLSGADANHITEFLGAAPALCLFAHEGNSEMIALLLEFHACIDLANSQGRT- 164
V+ R LL +GAD N + F G P + G++++ LLL A + A+ T
Sbjct: 24 QVETVRQLLEAGADPNALNRF-GRRPIQVMMM--GSAQVAELLLLHGAEPNCADPATLTR 80
Query: 165 PLSLAAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGH 207
P+ AA G ++ + L AGA L D GR + A GH
Sbjct: 81 PVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGH 123
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 56/131 (42%), Gaps = 17/131 (12%)
Query: 166 LSLAAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPLMLAVKEGHWAT 225
L+ AA RG +E VR L+ AGA + GR + + +M+ G
Sbjct: 16 LATAAARGQVETVRQLLEAGADPNALNRFGR------------RPIQVMMM----GSAQV 59
Query: 226 AEKLLQHHAPLDQTDGSHKT-PLMIAAQEGHVGLLELLLDKGADILREDGEGLTALSWAC 284
AE LL H A + D + T P+ AA+EG + L +L GA + D G + A
Sbjct: 60 AELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAE 119
Query: 285 MRGRIQAVTYL 295
+G YL
Sbjct: 120 EQGHRDIARYL 130
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 32.0 bits (71), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 57/210 (27%), Positives = 82/210 (39%), Gaps = 12/210 (5%)
Query: 144 MIALLLEF---HACIDLANSQGRTPLSLAAGRGHMEAVRTLVAAGASLGRTDTTGRCALV 200
+ LL F H +DL N G+T L LAA G V L AAGA + + G AL
Sbjct: 24 FLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTAL- 82
Query: 201 HAARGGHLQNLSPLMLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLE 260
H A + ++L + H A + D SH P + +Q E
Sbjct: 83 HLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSH-APAAVDSQPNPENEEE 141
Query: 261 LL-LDKGADILREDGEGLTALSWACMRGRIQAVTYLLDRDRGAMIEHVDIN-GLRPLDRA 318
D + E+ +G T L A + + V L RD GA + + G PL A
Sbjct: 142 PRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLL--RDAGADLNKPEPTCGRTPLHLA 199
Query: 319 ISCRNVPVVQCFLRKGAKLGPTTWSMAAGK 348
+ + V++ L+ GA T M G+
Sbjct: 200 VEAQAASVLELLLKAGAD---PTARMYGGR 226
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 32.0 bits (71), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 57/210 (27%), Positives = 82/210 (39%), Gaps = 12/210 (5%)
Query: 144 MIALLLEF---HACIDLANSQGRTPLSLAAGRGHMEAVRTLVAAGASLGRTDTTGRCALV 200
+ LL F H +DL N G+T L LAA G V L AAGA + + G AL
Sbjct: 24 FLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTAL- 82
Query: 201 HAARGGHLQNLSPLMLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLE 260
H A + ++L + H A + D SH P + +Q E
Sbjct: 83 HLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSH-APAAVDSQPNPENEEE 141
Query: 261 LL-LDKGADILREDGEGLTALSWACMRGRIQAVTYLLDRDRGAMIEHVDIN-GLRPLDRA 318
D + E+ +G T L A + + V L RD GA + + G PL A
Sbjct: 142 PRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLL--RDAGADLNKPEPTCGRTPLHLA 199
Query: 319 ISCRNVPVVQCFLRKGAKLGPTTWSMAAGK 348
+ + V++ L+ GA T M G+
Sbjct: 200 VEAQAASVLELLLKAGAD---PTARMYGGR 226
>pdb|1DCQ|A Chain A, Crystal Structure Of The Arf-Gap Domain And Ankyrin
Repeats Of Papbeta
Length = 278
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 22/44 (50%)
Query: 141 NSEMIALLLEFHACIDLANSQGRTPLSLAAGRGHMEAVRTLVAA 184
N+E + LLL A I++AN G TPL +A H L A
Sbjct: 217 NAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQA 260
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Query: 258 LLELLLDKGADILREDGEGLTALSWACMRGRIQAVTYLLDRDRG-AMIEHVDINGLRPLD 316
+++ L+ ++ ++ G+G TAL + C+ + + LL RG A IE + +G PLD
Sbjct: 187 IVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLL---RGKASIEIANESGETPLD 243
Query: 317 RA 318
A
Sbjct: 244 IA 245
>pdb|2NYJ|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1
pdb|2PNN|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1
Length = 273
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 45/192 (23%), Positives = 72/192 (37%), Gaps = 31/192 (16%)
Query: 138 HEGNSEMIALLLEFHACID----LANS-------QGRTPLSLAAGRGHMEAVRTLVAAGA 186
H G ++ IALLL+ D N+ +G+T L +A R + V LV GA
Sbjct: 66 HNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNXTLVTLLVENGA 125
Query: 187 SLGRTDTTGRCALVHAARGGHLQNLSPLMLAVKEGHWATAEKLLQH-------------- 232
+ + G R G PL LA A + LLQ+
Sbjct: 126 DV-QAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVG 184
Query: 233 ----HAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILR-EDGEGLTALSWACMRG 287
HA ++ D + + + + +L L + + +GLT L+ A G
Sbjct: 185 NTVLHALVEVADNTVDNTKFVTSXYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSG 244
Query: 288 RIQAVTYLLDRD 299
+I + Y+L R+
Sbjct: 245 KIGVLAYILQRE 256
>pdb|1Q5N|A Chain A, Crystal Structure Of Beta-Carboxy-Cis,Cis-Muconate
Cycloisomerase (Cmle) From Acinetobacter Calcoaceticus
Sp. Adp1
Length = 454
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 43/93 (46%), Gaps = 10/93 (10%)
Query: 208 LQNLSPLMLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGA 267
LQ P+ L K WA+A K LD+ + K +++A G VG L L D+G+
Sbjct: 158 LQQALPITLGHKLARWASAFK-----RDLDRINAI-KARVLVAQLGGAVGSLASLQDQGS 211
Query: 268 DILREDGE----GLTALSWACMRGRIQAVTYLL 296
++ + G TA +W R RI + +L
Sbjct: 212 IVVEAYAKQLKLGQTACTWHGERDRIVEIASVL 244
>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain
Length = 232
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 46/187 (24%), Positives = 72/187 (38%), Gaps = 55/187 (29%)
Query: 161 QGRTPLSLAAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPLMLAVKE 220
+G+T L +A ++ VR L+A GAS+
Sbjct: 74 EGQTALHIAVINQNVNLVRALLARGASVS------------------------------- 102
Query: 221 GHWATAEKLLQHHAPLDQT-DGSHKTPLMIAAQEGHVGLLELLLDKGADILREDGEGLTA 279
A A + H+ P + G H PL AA G ++ LL++ GADI +D G T
Sbjct: 103 ---ARATGSVFHYRPHNLIYYGEH--PLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTV 157
Query: 280 L---------SWACMRGRIQAVTYLLDRDRGAMIEHVDI----NGLRPLDRAISCRNVPV 326
L ++AC Q LL D G ++ +++ GL P A N+ +
Sbjct: 158 LHILILQPNKTFAC-----QMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVM 212
Query: 327 VQCFLRK 333
Q ++K
Sbjct: 213 FQHLMQK 219
Score = 28.1 bits (61), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 42/93 (45%), Gaps = 6/93 (6%)
Query: 212 SPLMLAVKEGHWATAEKLLQHHA-PLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADIL 270
SPL+LA KE KLL+ + Q +T L IAA ++ +L++ +++
Sbjct: 5 SPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELV 64
Query: 271 RED-----GEGLTALSWACMRGRIQAVTYLLDR 298
E EG TAL A + + V LL R
Sbjct: 65 FEPMTSELYEGQTALHIAVINQNVNLVRALLAR 97
>pdb|1SW6|A Chain A, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
pdb|1SW6|B Chain B, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
Length = 327
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 27/49 (55%)
Query: 236 LDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILREDGEGLTALSWAC 284
L+ D + T L IAA+ G++ +++ LLD GAD + GL + +
Sbjct: 276 LNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGA 324
>pdb|3QU4|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13ala Mutant
pdb|3QU4|B Chain B, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13ala Mutant
pdb|3QU4|C Chain C, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13ala Mutant
pdb|3QU4|D Chain D, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13ala Mutant
pdb|3QU4|E Chain E, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13ala Mutant
pdb|3QU4|F Chain F, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13ala Mutant
pdb|3QU4|G Chain G, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13ala Mutant
pdb|3QU4|H Chain H, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13ala Mutant
Length = 243
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 210 NLSPLMLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADI 269
N P ++A+K+G E ++ +APL G IA G + ++LLD GAD+
Sbjct: 168 NPEPYLMALKKGGLKADEAVVIENAPLGVEAGHKAGIFTIAVNTGPLD-GQVLLDAGADL 226
Query: 270 L 270
L
Sbjct: 227 L 227
>pdb|3QUB|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Glu47ala Mutant Complexed With Sulfate
Length = 243
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 210 NLSPLMLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADI 269
N P ++A+K+G E ++ +APL G IA G + ++LLD GAD+
Sbjct: 168 NPEPYLMALKKGGLKADEAVVIENAPLGVEAGHKAGIFTIAVNTGPLD-GQVLLDAGADL 226
Query: 270 L 270
L
Sbjct: 227 L 227
>pdb|3QYP|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Glu47asn Mutant Complexed With Calcium
And Phosphate
pdb|3QYP|B Chain B, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Glu47asn Mutant Complexed With Calcium
And Phosphate
pdb|3QUC|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Glu47asn Mutant Complexed With Sulfate
Length = 243
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 210 NLSPLMLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADI 269
N P ++A+K+G E ++ +APL G IA G + ++LLD GAD+
Sbjct: 168 NPEPYLMALKKGGLKADEAVVIENAPLGVEAGHKAGIFTIAVNTGPLD-GQVLLDAGADL 226
Query: 270 L 270
L
Sbjct: 227 L 227
>pdb|3QU5|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp11asn Mutant
pdb|3QU5|B Chain B, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp11asn Mutant
Length = 243
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 210 NLSPLMLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADI 269
N P ++A+K+G E ++ +APL G IA G + ++LLD GAD+
Sbjct: 168 NPEPYLMALKKGGLKADEAVVIENAPLGVEAGHKAGIFTIAVNTGPLD-GQVLLDAGADL 226
Query: 270 L 270
L
Sbjct: 227 L 227
>pdb|3QUT|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13asn Mutant, An Open Cap
Conformation
pdb|3QU7|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13asn Mutant Complexed With Calcium
And Phosphate
pdb|3QU7|B Chain B, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13asn Mutant Complexed With Calcium
And Phosphate
pdb|3QU9|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13asn Mutant Complexed With
Magnesium And Tartrate
Length = 243
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 210 NLSPLMLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADI 269
N P ++A+K+G E ++ +APL G IA G + ++LLD GAD+
Sbjct: 168 NPEPYLMALKKGGLKADEAVVIENAPLGVEAGHKAGIFTIAVNTGPLD-GQVLLDAGADL 226
Query: 270 L 270
L
Sbjct: 227 L 227
>pdb|3QUQ|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, An Open Cap Conformation
pdb|3QU2|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, A Closed Cap Conformation
pdb|3QU2|B Chain B, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, A Closed Cap Conformation
pdb|3QU2|C Chain C, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, A Closed Cap Conformation
pdb|3QU2|D Chain D, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, A Closed Cap Conformation
pdb|3QX7|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron Complexed With Phosphate, A Closed Cap
Conformation
pdb|3QXG|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron Complexed With Calcium, A Closed Cap
Conformation
pdb|3QXG|B Chain B, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron Complexed With Calcium, A Closed Cap
Conformation
Length = 243
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 210 NLSPLMLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADI 269
N P ++A+K+G E ++ +APL G IA G + ++LLD GAD+
Sbjct: 168 NPEPYLMALKKGGLKADEAVVIENAPLGVEAGHKAGIFTIAVNTGPLD-GQVLLDAGADL 226
Query: 270 L 270
L
Sbjct: 227 L 227
>pdb|3R9K|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Glu47asp Mutant Complexed With
Sulfate, A Closed Cap Conformation
Length = 243
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 210 NLSPLMLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADI 269
N P ++A+K+G E ++ +APL G IA G + ++LLD GAD+
Sbjct: 168 NPEPYLMALKKGGLKADEAVVIENAPLGVEAGHKAGIFTIAVNTGPLD-GQVLLDAGADL 226
Query: 270 L 270
L
Sbjct: 227 L 227
>pdb|3LJN|A Chain A, Ankyrin Repeat Protein From Leishmania Major
Length = 364
Score = 28.5 bits (62), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 28/58 (48%)
Query: 238 QTDGSHKTPLMIAAQEGHVGLLELLLDKGADILREDGEGLTALSWACMRGRIQAVTYL 295
++D + + +AA++G + L++ G ++ G TAL AC G + YL
Sbjct: 15 KSDDENXEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYL 72
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.135 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,688,567
Number of Sequences: 62578
Number of extensions: 424229
Number of successful extensions: 1720
Number of sequences better than 100.0: 130
Number of HSP's better than 100.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 947
Number of HSP's gapped (non-prelim): 437
length of query: 356
length of database: 14,973,337
effective HSP length: 100
effective length of query: 256
effective length of database: 8,715,537
effective search space: 2231177472
effective search space used: 2231177472
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)