RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy14202
(356 letters)
>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate
protein-protein interactions in very diverse families of
proteins. The number of ANK repeats in a protein can
range from 2 to over 20 (ankyrins, for example). ANK
repeats may occur in combinations with other types of
domains. The structural repeat unit contains two
antiparallel helices and a beta-hairpin, repeats are
stacked in a superhelical arrangement; this alignment
contains 4 consecutive repeats.
Length = 126
Score = 105 bits (264), Expect = 6e-28
Identities = 50/141 (35%), Positives = 72/141 (51%), Gaps = 15/141 (10%)
Query: 156 DLANSQGRTPLSLAAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPLM 215
+ + GRTPL LAA GH+E V+ L+ GA + D GR +PL
Sbjct: 1 NARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGR---------------TPLH 45
Query: 216 LAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILREDGE 275
LA K GH + LL+ A ++ D TPL +AA+ G++ +++LLL GAD+ D +
Sbjct: 46 LAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKD 105
Query: 276 GLTALSWACMRGRIQAVTYLL 296
G T L A G ++ V LL
Sbjct: 106 GRTPLHLAAKNGHLEVVKLLL 126
Score = 102 bits (255), Expect = 1e-26
Identities = 43/120 (35%), Positives = 65/120 (54%), Gaps = 2/120 (1%)
Query: 212 SPLMLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILR 271
+PL LA GH + LL++ A ++ D +TPL +AA+ GH+ +++LLL+KGAD+
Sbjct: 9 TPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNA 68
Query: 272 EDGEGLTALSWACMRGRIQAVTYLLDRDRGAMIEHVDINGLRPLDRAISCRNVPVVQCFL 331
D +G T L A G + V LL GA + D +G PL A ++ VV+ L
Sbjct: 69 RDKDGNTPLHLAARNGNLDVVKLLL--KHGADVNARDKDGRTPLHLAAKNGHLEVVKLLL 126
Score = 89.0 bits (221), Expect = 9e-22
Identities = 48/132 (36%), Positives = 71/132 (53%), Gaps = 15/132 (11%)
Query: 132 ALCLFAHEGNSEMIALLLEFHACIDLANSQGRTPLSLAAGRGHMEAVRTLVAAGASLGRT 191
L L A G+ E++ LLLE A ++ ++ GRTPL LAA GH+E V+ L+ GA +
Sbjct: 10 PLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNAR 69
Query: 192 DTTGRCALVHAARGGHLQNLSPLMLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAA 251
D G L AAR G+L + LL+H A ++ D +TPL +AA
Sbjct: 70 DKDGNTPLHLAARNGNLD---------------VVKLLLKHGADVNARDKDGRTPLHLAA 114
Query: 252 QEGHVGLLELLL 263
+ GH+ +++LLL
Sbjct: 115 KNGHLEVVKLLL 126
Score = 81.3 bits (201), Expect = 6e-19
Identities = 36/99 (36%), Positives = 56/99 (56%), Gaps = 2/99 (2%)
Query: 237 DQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILREDGEGLTALSWACMRGRIQAVTYLL 296
+ D +TPL +AA GH+ +++LLL+ GAD+ +D +G T L A G ++ V LL
Sbjct: 1 NARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLL 60
Query: 297 DRDRGAMIEHVDINGLRPLDRAISCRNVPVVQCFLRKGA 335
++GA + D +G PL A N+ VV+ L+ GA
Sbjct: 61 --EKGADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGA 97
Score = 55.5 bits (134), Expect = 1e-09
Identities = 31/77 (40%), Positives = 47/77 (61%), Gaps = 2/77 (2%)
Query: 106 NVKVSRLLLLSGADANHITEFLGAAPALCLFAHEGNSEMIALLLEFHACIDLANSQGRTP 165
++++ +LLL GAD N + G P L L A GN +++ LLL+ A ++ + GRTP
Sbjct: 52 HLEIVKLLLEKGADVNARDKD-GNTP-LHLAARNGNLDVVKLLLKHGADVNARDKDGRTP 109
Query: 166 LSLAAGRGHMEAVRTLV 182
L LAA GH+E V+ L+
Sbjct: 110 LHLAAKNGHLEVVKLLL 126
Score = 27.3 bits (61), Expect = 5.4
Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 102 VYSPNVKVSRLLLLSGADANHITEFLGAAPALCLFAHEGNSEMIALLL 149
+ N+ V +LLL GAD N + G P L L A G+ E++ LLL
Sbjct: 81 ARNGNLDVVKLLLKHGADVNARDKD-GRTP-LHLAAKNGHLEVVKLLL 126
>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies).
Length = 91
Score = 80.0 bits (198), Expect = 7e-19
Identities = 30/86 (34%), Positives = 49/86 (56%), Gaps = 2/86 (2%)
Query: 214 LMLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILRED 273
L LA K G+ + LL+ A ++ G T L +AA+ G++ +++LLL+ GAD+ +D
Sbjct: 1 LHLAAKNGNLELVKLLLEKGADVNL--GDTDTALHLAARNGNLEIVKLLLEHGADVNAKD 58
Query: 274 GEGLTALSWACMRGRIQAVTYLLDRD 299
+G TAL A G ++ V LL+
Sbjct: 59 KDGNTALHLAARNGNLEIVKLLLEHG 84
Score = 77.7 bits (192), Expect = 5e-18
Identities = 34/108 (31%), Positives = 55/108 (50%), Gaps = 17/108 (15%)
Query: 166 LSLAAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPLMLAVKEGHWAT 225
L LAA G++E V+ L+ GA + DT + L LA + G+
Sbjct: 1 LHLAAKNGNLELVKLLLEKGADVNLGDTD-----------------TALHLAARNGNLEI 43
Query: 226 AEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILRED 273
+ LL+H A ++ D T L +AA+ G++ +++LLL+ GADI +D
Sbjct: 44 VKLLLEHGADVNAKDKDGNTALHLAARNGNLEIVKLLLEHGADINLKD 91
Score = 70.0 bits (172), Expect = 3e-15
Identities = 32/91 (35%), Positives = 50/91 (54%), Gaps = 4/91 (4%)
Query: 247 LMIAAQEGHVGLLELLLDKGADILREDGEGLTALSWACMRGRIQAVTYLLDRDRGAMIEH 306
L +AA+ G++ L++LLL+KGAD+ G+ TAL A G ++ V LL+ GA +
Sbjct: 1 LHLAAKNGNLELVKLLLEKGADV--NLGDTDTALHLAARNGNLEIVKLLLEH--GADVNA 56
Query: 307 VDINGLRPLDRAISCRNVPVVQCFLRKGAKL 337
D +G L A N+ +V+ L GA +
Sbjct: 57 KDKDGNTALHLAARNGNLEIVKLLLEHGADI 87
Score = 62.7 bits (153), Expect = 1e-12
Identities = 34/108 (31%), Positives = 52/108 (48%), Gaps = 17/108 (15%)
Query: 133 LCLFAHEGNSEMIALLLEFHACIDLANSQGRTPLSLAAGRGHMEAVRTLVAAGASLGRTD 192
L L A GN E++ LLLE A ++L ++ T L LAA G++E V+ L+ GA + D
Sbjct: 1 LHLAAKNGNLELVKLLLEKGADVNLGDT--DTALHLAARNGNLEIVKLLLEHGADVNAKD 58
Query: 193 TTGRCALVHAARGGHLQNLSPLMLAVKEGHWATAEKLLQHHAPLDQTD 240
G + L LA + G+ + LL+H A ++ D
Sbjct: 59 KDGN---------------TALHLAARNGNLEIVKLLLEHGADINLKD 91
Score = 58.8 bits (143), Expect = 3e-11
Identities = 33/91 (36%), Positives = 48/91 (52%), Gaps = 4/91 (4%)
Query: 102 VYSPNVKVSRLLLLSGADANHITEFLGAAPALCLFAHEGNSEMIALLLEFHACIDLANSQ 161
+ N+++ +LLL GAD N AL L A GN E++ LLLE A ++ +
Sbjct: 5 AKNGNLELVKLLLEKGADVNLGDTDT----ALHLAARNGNLEIVKLLLEHGADVNAKDKD 60
Query: 162 GRTPLSLAAGRGHMEAVRTLVAAGASLGRTD 192
G T L LAA G++E V+ L+ GA + D
Sbjct: 61 GNTALHLAARNGNLEIVKLLLEHGADINLKD 91
>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction
only].
Length = 235
Score = 77.2 bits (189), Expect = 3e-16
Identities = 52/165 (31%), Positives = 76/165 (46%), Gaps = 13/165 (7%)
Query: 155 IDLANSQGRTPLSLAAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPL 214
+ + GR PL AA +G + V+ L+A+GA + D G L AA G+
Sbjct: 66 LAARDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPE---- 121
Query: 215 MLAVKEGHWATAEKLLQHHAPLD---QTDGSHKTPLMIAAQEGHVGLLELLLDKGADILR 271
G+ A+ LL+ A LD D TPL AA G ++ELLL+ GAD
Sbjct: 122 ------GNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGADPNS 175
Query: 272 EDGEGLTALSWACMRGRIQAVTYLLDRDRGAMIEHVDINGLRPLD 316
+ G+TAL A GRI+ V LLD+ + ++ G+ +
Sbjct: 176 RNSYGVTALDPAAKNGRIELVKLLLDKGLHLSLLKFNLEGVANAN 220
Score = 55.6 bits (133), Expect = 5e-09
Identities = 40/135 (29%), Positives = 57/135 (42%), Gaps = 10/135 (7%)
Query: 208 LQNLSPLMLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVG-----LLELL 262
L PL A +G + LL A ++ D TPL +AA G+ + +LL
Sbjct: 71 LDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLL 130
Query: 263 LDKGA---DILREDGEGLTALSWACMRGRIQAVTYLLDRDRGAMIEHVDINGLRPLDRAI 319
L+ GA D +G T L WA + G V LL+ GA + G+ LD A
Sbjct: 131 LEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEA--GADPNSRNSYGVTALDPAA 188
Query: 320 SCRNVPVVQCFLRKG 334
+ +V+ L KG
Sbjct: 189 KNGRIELVKLLLDKG 203
Score = 52.1 bits (124), Expect = 7e-08
Identities = 31/107 (28%), Positives = 47/107 (43%), Gaps = 6/107 (5%)
Query: 235 PLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILREDGEGLTALSWACMRGR-----I 289
L D + PL AA +G +++LLL GAD+ +D +G T L A + G I
Sbjct: 65 HLAARDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNI 124
Query: 290 QAVTYLLDR-DRGAMIEHVDINGLRPLDRAISCRNVPVVQCFLRKGA 335
+ LL+ + D +G PL A + +V+ L GA
Sbjct: 125 EVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGA 171
Score = 48.3 bits (114), Expect = 2e-06
Identities = 49/163 (30%), Positives = 71/163 (43%), Gaps = 10/163 (6%)
Query: 96 LCSLRNVYSPNVKVSRLLLLSGADANHITEFLGAAPALCLFAHEGNS-----EMIALLLE 150
L + K+ +LLL SGAD N + G P L L A GN E+ LLLE
Sbjct: 75 LPLHSAASKGDDKIVKLLLASGADVN-AKDADGDTP-LHLAALNGNPPEGNIEVAKLLLE 132
Query: 151 FHACID---LANSQGRTPLSLAAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGH 207
A +D L + G TPL AA G + V L+ AGA ++ G AL AA+ G
Sbjct: 133 AGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKNGR 192
Query: 208 LQNLSPLMLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIA 250
++ + L+ +A + + + + T L+IA
Sbjct: 193 IELVKLLLDKGLHLSLLKFNLEGVANANVSKRNILNLTSLIIA 235
>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional.
Length = 434
Score = 67.7 bits (165), Expect = 2e-12
Identities = 59/239 (24%), Positives = 102/239 (42%), Gaps = 40/239 (16%)
Query: 102 VYSPNVKVSRLLLLSGADANHITEFL----------GAAPALCLFAHEG----------- 140
+ S + K+ L + GAD NHI + GA + L G
Sbjct: 43 IRSGDAKIVELFIKHGADINHINTKIPHPLLTAIKIGAHDIIKLLIDNGVDTSILPIPCI 102
Query: 141 NSEMIALLLEFHACIDLANSQGRTPLSLAAGRGHMEAVRTLVAAGASLGRTDTTGRCALV 200
+MI +L+ +++ +++ +T L A +G +E+++ L GA + D G
Sbjct: 103 EKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGC---- 158
Query: 201 HAARGGHLQNLSPLMLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLE 260
P+ +A+K + + LL+ A + D + ++PL AA+ G ++
Sbjct: 159 -----------YPIHIAIKHNFFDIIKLLLEKGAYANVKDNNGESPLHNAAEYGDYACIK 207
Query: 261 LLLDKGADILREDGEGLTALSWACMRGRIQAVTYLLDRDRGAMIEHVDINGLRPLDRAI 319
LL+D G I+ + G T L A + R A+ L++ A I DI+G PL AI
Sbjct: 208 LLIDHGNHIMNKCKNGFTPLHNAIIHNR-SAIELLIN---NASINDQDIDGSTPLHHAI 262
Score = 44.2 bits (104), Expect = 6e-05
Identities = 37/152 (24%), Positives = 65/152 (42%), Gaps = 25/152 (16%)
Query: 209 QNLSPLMLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGAD 268
+ +PL+ A++ G E ++H A ++ + PL+ A + G +++LL+D G D
Sbjct: 34 ETTTPLIDAIRSGDAKIVELFIKHGADINHINTKIPHPLLTAIKIGAHDIIKLLIDNGVD 93
Query: 269 ----------------ILR-------EDGEGLTALSWACMRGRIQAVTYLLDRDRGAMIE 305
IL +D E T L +A +G ++++ L + IE
Sbjct: 94 TSILPIPCIEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIE 153
Query: 306 HVDINGLRPLDRAISCRNVPVVQCFLRKGAKL 337
D NG P+ AI +++ L KGA
Sbjct: 154 --DDNGCYPIHIAIKHNFFDIIKLLLEKGAYA 183
>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional.
Length = 413
Score = 65.4 bits (159), Expect = 8e-12
Identities = 57/213 (26%), Positives = 89/213 (41%), Gaps = 31/213 (14%)
Query: 98 SLRNVYSP--------NVKVSRLLLLSGADANHITEFLGAAPALCLFAHEGNSEMIALLL 149
+ + SP + + +LL+ GA + ++ L EG+ + + LL
Sbjct: 31 EIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDV--KYPDIESELHDAVEEGDVKAVEELL 88
Query: 150 EFHACI-DLANSQGRTPLSLAAGRGHMEAVRTLVAAGAS--LGRTDTTGRCALVHAARGG 206
+ D+ G TPL LA ++ ++ L+A GA + TD
Sbjct: 89 DLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIPNTDKF------------ 136
Query: 207 HLQNLSPLMLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKG 266
SPL LAV G E L+ H A LD D TPL+IA +G + + ++LLD G
Sbjct: 137 -----SPLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSG 191
Query: 267 ADILREDGEG-LTALSWACMRGRIQAVTYLLDR 298
A+I G + AL +A +I V + R
Sbjct: 192 ANIDYFGKNGCVAALCYAIENNKIDIVRLFIKR 224
>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel;
Provisional.
Length = 823
Score = 62.2 bits (151), Expect = 1e-10
Identities = 42/149 (28%), Positives = 68/149 (45%), Gaps = 16/149 (10%)
Query: 137 AHEGNSEMIALLLEFHACIDLANSQGRTPLSLAAGRGHMEAVRTLVAAGASLGRTDTTGR 196
A GN+ ++ LL+ D+ +S+GRTPL +AA +G+ + V L+ ++ D G
Sbjct: 533 ASTGNAALLEELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGN 592
Query: 197 CALVHAARGGH------LQNLSP----------LMLAVKEGHWATAEKLLQHHAPLDQTD 240
AL +A H L + + L A K ++LL+ +D D
Sbjct: 593 TALWNAISAKHHKIFRILYHFASISDPHAAGDLLCTAAKRNDLTAMKELLKQGLNVDSED 652
Query: 241 GSHKTPLMIAAQEGHVGLLELLLDKGADI 269
T L +A E HV ++ LL+ GAD+
Sbjct: 653 HQGATALQVAMAEDHVDMVRLLIMNGADV 681
Score = 42.5 bits (100), Expect = 3e-04
Identities = 18/61 (29%), Positives = 30/61 (49%)
Query: 133 LCLFAHEGNSEMIALLLEFHACIDLANSQGRTPLSLAAGRGHMEAVRTLVAAGASLGRTD 192
LC A + + LL+ +D + QG T L +A H++ VR L+ GA + + +
Sbjct: 626 LCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQVAMAEDHVDMVRLLIMNGADVDKAN 685
Query: 193 T 193
T
Sbjct: 686 T 686
Score = 38.3 bits (89), Expect = 0.007
Identities = 33/148 (22%), Positives = 53/148 (35%), Gaps = 24/148 (16%)
Query: 169 AAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGH------------------LQN 210
A G+ + L+ A D+ GR L AA G+
Sbjct: 532 VASTGNAALLEELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANG 591
Query: 211 LSPLMLAVKEGHWATAEKLLQHHAPLD--QTDGSHKTPLMIAAQEGHVGLLELLLDKGAD 268
+ L A+ H ++L H A + G L AA+ + ++ LL +G +
Sbjct: 592 NTALWNAISAKHH-KIFRILYHFASISDPHAAGD---LLCTAAKRNDLTAMKELLKQGLN 647
Query: 269 ILREDGEGLTALSWACMRGRIQAVTYLL 296
+ ED +G TAL A + V L+
Sbjct: 648 VDSEDHQGATALQVAMAEDHVDMVRLLI 675
Score = 37.5 bits (87), Expect = 0.011
Identities = 23/69 (33%), Positives = 34/69 (49%)
Query: 212 SPLMLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILR 271
S L+ G+ A E+LL+ D D +TPL IAA +G+ + +LL ++
Sbjct: 527 SNLLTVASTGNAALLEELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHI 586
Query: 272 EDGEGLTAL 280
D G TAL
Sbjct: 587 RDANGNTAL 595
Score = 33.7 bits (77), Expect = 0.14
Identities = 35/120 (29%), Positives = 43/120 (35%), Gaps = 16/120 (13%)
Query: 215 MLAVKEGHWATAEKLLQHHAPLD---------QTDGSHKTP-----LMIAAQEGHVGLLE 260
M +E + + LQHH L G H P L+ A G+ LLE
Sbjct: 483 MQTRQEDNVVILKNFLQHHKELHDLNVGDLLGDNGGEHDDPNMASNLLTVASTGNAALLE 542
Query: 261 LLLDKGADILREDGEGLTALSWACMRGRIQAVTYLLDRDRGAMIEHVDINGLRPLDRAIS 320
LL D D +G T L A +G V LL + D NG L AIS
Sbjct: 543 ELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLL--KHACNVHIRDANGNTALWNAIS 600
>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional.
Length = 471
Score = 58.9 bits (143), Expect = 1e-09
Identities = 68/267 (25%), Positives = 96/267 (35%), Gaps = 32/267 (11%)
Query: 95 ALCSLRNVYSPNVK-VSRLLLLSGADANHITEFLGAAPALCLFAHEGNSEMIALLLEFHA 153
L + S VK + RLLL +GAD N G P + ++I LL++ A
Sbjct: 50 PLHLYLHYSSEKVKDIVRLLLEAGADVNAPERC-GFTPLHLYLYNATTLDVIKLLIKAGA 108
Query: 154 CIDLANSQGRTPLS--LAAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNL 211
++ + GRTPL L+ + + +R L+ GA + D G L N+
Sbjct: 109 DVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNALDLYGMTPL-AVLLKSRNANV 167
Query: 212 SPLMLAVKEGHWATAEK-----LLQHHA------------------PLDQTDGSHKTPLM 248
L L + G A LL HH TD TPL
Sbjct: 168 ELLRLLIDAGADVYAVDDRFRSLLHHHLQSFKPRARIVRELIRAGCDPAATDMLGNTPLH 227
Query: 249 IAAQEGHV--GLLELLLDKGADILREDGEGLTALSWACMRGRIQAVTYLLDRDRGAMIEH 306
A L+ LL G I + G T L +A + +A L+ GA I
Sbjct: 228 SMATGSSCKRSLVLPLLIAGISINARNRYGQTPLHYAAVFNNPRACRRLIAL--GADINA 285
Query: 307 VDINGLRPLDRAISCRNVPVVQCFLRK 333
V +G PL + N V+ L K
Sbjct: 286 VSSDGNTPLSLMVRNNNGRAVRAALAK 312
Score = 53.5 bits (129), Expect = 6e-08
Identities = 53/187 (28%), Positives = 81/187 (43%), Gaps = 19/187 (10%)
Query: 100 RNVYSPNVKVS--RLLLLSGADANHITEFLGAAPALCL-FAHEGNSEMIALLLEFHACID 156
+ + NV V R LL +GAD N E+ L L ++ E +++ LLLE A ++
Sbjct: 18 YLLNASNVTVEEVRRLLAAGADVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADVN 77
Query: 157 LANSQGRTPLSLAAGRGHMEAV-RTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPLM 215
G TPL L V + L+ AGA + D GR L H +L +
Sbjct: 78 APERCGFTPLHLYLYNATTLDVIKLLIKAGADVNAKDKVGRTPL-HV----YLSGFN--- 129
Query: 216 LAVKEGHWATAEKLLQHHAPLDQTDGSHKTPL--MIAAQEGHVGLLELLLDKGADILRED 273
+ LL+ A ++ D TPL ++ ++ +V LL LL+D GAD+ D
Sbjct: 130 --INPK---VIRLLLRKGADVNALDLYGMTPLAVLLKSRNANVELLRLLIDAGADVYAVD 184
Query: 274 GEGLTAL 280
+ L
Sbjct: 185 DRFRSLL 191
Score = 48.9 bits (117), Expect = 2e-06
Identities = 41/169 (24%), Positives = 72/169 (42%), Gaps = 21/169 (12%)
Query: 175 MEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPLMLAVKEGHWATAEKLLQHHA 234
+E VR L+AAGA + G+ L H + + ++ LL+ A
Sbjct: 27 VEEVRRLLAAGADVNFRGEYGKTPL-HLYLHYSSEKVKDIVRL-----------LLEAGA 74
Query: 235 PLDQTDGSHKTPLMIAAQEGHV-GLLELLLDKGADILREDGEGLTALSWACMRG-RIQA- 291
++ + TPL + +++LL+ GAD+ +D G T L + G I
Sbjct: 75 DVNAPERCGFTPLHLYLYNATTLDVIKLLIKAGADVNAKDKVGRTPLH-VYLSGFNINPK 133
Query: 292 -VTYLLDRDRGAMIEHVDINGLRPLDRAISCRNVPV--VQCFLRKGAKL 337
+ LL +GA + +D+ G+ PL + RN V ++ + GA +
Sbjct: 134 VIRLLL--RKGADVNALDLYGMTPLAVLLKSRNANVELLRLLIDAGADV 180
>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional.
Length = 422
Score = 58.5 bits (142), Expect = 2e-09
Identities = 53/237 (22%), Positives = 86/237 (36%), Gaps = 41/237 (17%)
Query: 106 NVKVSRLLLLSGADAN-HITEFLGAAPALCLFAH--EGNSEMIALLLEFHACIDLANSQG 162
N+ V ++LL +GAD N L + E++ LLLE+ A ++ ++ G
Sbjct: 47 NIDVVKILLDNGADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGANVNAPDNNG 106
Query: 163 RTPLSLAAGR--GHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPLMLAVKE 220
TPL A + V L+ GA++ ++ G + L L ++
Sbjct: 107 ITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDG---------------ENLLHLYLES 151
Query: 221 GHWAT--AEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILREDGEGLT 278
+ L+ ++ + + LL G I +D G T
Sbjct: 152 NKIDLKILKLLIDKGVDINAKNR-----------------VNYLLSYGVPINIKDVYGFT 194
Query: 279 ALSWACMRGRIQAVTYLLDRDRGAMIEHVDINGLRPLDRAISCRNVPVVQCFLRKGA 335
L +A + V YLLD GA V+ G PL AI N + + L G
Sbjct: 195 PLHYAVYNNNPEFVKYLLDL--GANPNLVNKYGDTPLHIAILNNNKEIFKLLLNNGP 249
Score = 35.8 bits (83), Expect = 0.031
Identities = 20/92 (21%), Positives = 35/92 (38%), Gaps = 19/92 (20%)
Query: 104 SPNVKVSRLLLLSGADANHITEFLGAAPALCLFAHEGNSEMIALLLEFHACIDLANSQGR 163
++K+ +LL+ G D N + LL + I++ + G
Sbjct: 153 KIDLKILKLLIDKGVDINAKNR-------------------VNYLLSYGVPINIKDVYGF 193
Query: 164 TPLSLAAGRGHMEAVRTLVAAGASLGRTDTTG 195
TPL A + E V+ L+ GA+ + G
Sbjct: 194 TPLHYAVYNNNPEFVKYLLDLGANPNLVNKYG 225
Score = 28.9 bits (65), Expect = 4.1
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Query: 102 VYSPNVKVSRLLLLSGADANHITEFLGAAPALCLFAHEGNSEMIALLLEFHACID 156
VY+ N + + LL GA+ N + ++ G P + N E+ LLL I
Sbjct: 200 VYNNNPEFVKYLLDLGANPNLVNKY-GDTPLHIAILNN-NKEIFKLLLNNGPSIK 252
>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies).
Length = 54
Score = 51.5 bits (124), Expect = 4e-09
Identities = 22/52 (42%), Positives = 30/52 (57%)
Query: 245 TPLMIAAQEGHVGLLELLLDKGADILREDGEGLTALSWACMRGRIQAVTYLL 296
T L AA G + L++ LL+KG DI R D +G TAL A G ++ + LL
Sbjct: 3 TALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54
Score = 43.0 bits (102), Expect = 6e-06
Identities = 17/54 (31%), Positives = 28/54 (51%)
Query: 210 NLSPLMLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLL 263
+ L A G + LL+ +++TD T L IAA+ G++ +L+LLL
Sbjct: 1 GRTALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54
Score = 42.6 bits (101), Expect = 6e-06
Identities = 21/48 (43%), Positives = 27/48 (56%)
Query: 162 GRTPLSLAAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQ 209
GRT L AA G +E V+ L+ G + RTD G AL AA G+L+
Sbjct: 1 GRTALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLE 48
Score = 42.6 bits (101), Expect = 7e-06
Identities = 17/51 (33%), Positives = 27/51 (52%)
Query: 132 ALCLFAHEGNSEMIALLLEFHACIDLANSQGRTPLSLAAGRGHMEAVRTLV 182
AL A G E++ LLE I+ + G T L +AA G++E ++ L+
Sbjct: 4 ALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54
Score = 40.7 bits (96), Expect = 3e-05
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 276 GLTALSWACMRGRIQAVTYLLDRDRGAMIEHVDINGLRPLDRAISCRNVPVVQCFL 331
G TAL A + GR++ V YLL ++G I D +G L A N+ V++ L
Sbjct: 1 GRTALHKAAISGRLELVKYLL--EKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54
>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional.
Length = 682
Score = 56.2 bits (135), Expect = 1e-08
Identities = 69/252 (27%), Positives = 108/252 (42%), Gaps = 38/252 (15%)
Query: 96 LCSLRNVYSPNVKVSRLLLLSGADANHITEFLGA-------APALCLFAHEGNSEMIALL 148
L L+ + + +++ S LL +G N I + AP+L S ++ L
Sbjct: 242 LSLLKAIRNEDLETSLLLYDAGFSVNSIDDCKNTPLHHASQAPSL--------SRLVPKL 293
Query: 149 LEFHACIDLANSQGRTPLSLAAGRGH-MEAVRTLVAAGASLGRTDTTGRCALVHAARGGH 207
LE A ++ N +G TPL L A G+ E +RTL+ GA + D L A+
Sbjct: 294 LERGADVNAKNIKGETPLYLMAKNGYDTENIRTLIMLGADVNAADRLYITPLHQASTLDR 353
Query: 208 LQNLSPLMLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGA 267
++ LL+ A ++ D KTP+ AA +V ++ LLD GA
Sbjct: 354 NKD--------------IVITLLELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGA 399
Query: 268 DILREDGEGLTALSWA-CMRGRIQAVTYLLDRDRGAMIEHVDINGLRPLDRAISCRN--- 323
DI + TAL +A C +V L+ DRGA + + + PL A C+
Sbjct: 400 DIEALSQKIGTALHFALCGTNPYMSVKTLI--DRGANVNSKNKDLSTPLHYA--CKKNCK 455
Query: 324 VPVVQCFLRKGA 335
+ V++ L GA
Sbjct: 456 LDVIEMLLDNGA 467
Score = 42.0 bits (98), Expect = 4e-04
Identities = 54/251 (21%), Positives = 105/251 (41%), Gaps = 27/251 (10%)
Query: 107 VKVSRLLLLSGADANHITEFLGAAPALCLFAHEGNSEMIALLLEFHACIDLANSQGRTPL 166
+ ++ +LL GAD N + P + A GN++M+ LLL + A +++ + L
Sbjct: 158 LLIAEMLLEGGADVN-AKDIYCITP-IHYAAERGNAKMVNLLLSYGADVNIIALDDLSVL 215
Query: 167 SLAAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNL--------------- 211
A +++ ++ ++ +++ + D + L+ A R L+
Sbjct: 216 ECAVDSKNIDTIKAIIDNRSNINKNDLS----LLKAIRNEDLETSLLLYDAGFSVNSIDD 271
Query: 212 ---SPLMLAVKEGHWAT-AEKLLQHHAPLDQTDGSHKTPLMIAAQEGH-VGLLELLLDKG 266
+PL A + + KLL+ A ++ + +TPL + A+ G+ + L+ G
Sbjct: 272 CKNTPLHHASQAPSLSRLVPKLLERGADVNAKNIKGETPLYLMAKNGYDTENIRTLIMLG 331
Query: 267 ADILREDGEGLTALSWACMRGRIQAVTYLLDRDRGAMIEHVDINGLRPLDRAISCRNVPV 326
AD+ D +T L A R + + L + GA + D P+ A NV +
Sbjct: 332 ADVNAADRLYITPLHQASTLDRNKDIVITL-LELGANVNARDYCDKTPIHYAAVRNNVVI 390
Query: 327 VQCFLRKGAKL 337
+ L GA +
Sbjct: 391 INTLLDYGADI 401
Score = 38.1 bits (88), Expect = 0.006
Identities = 21/80 (26%), Positives = 43/80 (53%), Gaps = 2/80 (2%)
Query: 252 QEGHVGLLELLLDKGADILREDGEGLTALSWACMRGRIQAVTYLLDRDRGAMIEHVDING 311
Q+ + + E+LL+ GAD+ +D +T + +A RG + V LL GA + + ++
Sbjct: 154 QQDELLIAEMLLEGGADVNAKDIYCITPIHYAAERGNAKMVNLLL--SYGADVNIIALDD 211
Query: 312 LRPLDRAISCRNVPVVQCFL 331
L L+ A+ +N+ ++ +
Sbjct: 212 LSVLECAVDSKNIDTIKAII 231
Score = 37.4 bits (86), Expect = 0.011
Identities = 41/160 (25%), Positives = 72/160 (45%), Gaps = 16/160 (10%)
Query: 111 RLLLLSGADANHITEFLGAAPALCLFAHEGNSEMIALLLEFHACIDLANSQGRTPLSLAA 170
R L++ GAD N + L P + N +++ LLE A ++ + +TP+ AA
Sbjct: 325 RTLIMLGADVN-AADRLYITPLHQASTLDRNKDIVITLLELGANVNARDYCDKTPIHYAA 383
Query: 171 GRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPLMLAVKEGHWATAEKLL 230
R ++ + TL+ GA + AL A G +P M + + L+
Sbjct: 384 VRNNVVIINTLLDYGADIEALSQKIGTALHFALCG-----TNPYM---------SVKTLI 429
Query: 231 QHHAPLDQTDGSHKTPLMIAAQEG-HVGLLELLLDKGADI 269
A ++ + TPL A ++ + ++E+LLD GAD+
Sbjct: 430 DRGANVNSKNKDLSTPLHYACKKNCKLDVIEMLLDNGADV 469
>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies).
Length = 56
Score = 44.7 bits (106), Expect = 2e-06
Identities = 25/56 (44%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Query: 229 LLQHHAP-LDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILREDGEGLTALSWA 283
LL+H L+ TDG+ TPL +AA+ G + L++ LL G D+ D +GLTAL A
Sbjct: 1 LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56
Score = 39.6 bits (93), Expect = 8e-05
Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Query: 262 LLDKG-ADILREDGEGLTALSWACMRGRIQAVTYLLDRDRGAMIEHVDINGLRPLDRA 318
LL+ G D+ DG G T L A G ++ V +LL G + D +GL LD A
Sbjct: 1 LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLL--KPGVDLNLRDSDGLTALDLA 56
Score = 35.4 bits (82), Expect = 0.002
Identities = 20/56 (35%), Positives = 27/56 (48%)
Query: 147 LLLEFHACIDLANSQGRTPLSLAAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHA 202
LL ++ + G TPL LAA G +E V+ L+ G L D+ G AL A
Sbjct: 1 LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56
Score = 33.9 bits (78), Expect = 0.010
Identities = 13/39 (33%), Positives = 18/39 (46%)
Query: 212 SPLMLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIA 250
+PL LA K G + LL+ L+ D T L +A
Sbjct: 18 TPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56
Score = 30.8 bits (70), Expect = 0.13
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 113 LLLSGADANHITEFLGAAPALCLFAHEGNSEMIALLLEFHACIDLANSQGRTPLSLA 169
LL G + T+ G P L L A G E++ LL+ ++L +S G T L LA
Sbjct: 1 LLEHGPIDLNATDGNGNTP-LHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56
>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat. Ankyrins are multifunctional
adaptors that link specific proteins to the
membrane-associated, spectrin- actin cytoskeleton. This
repeat-domain is a 'membrane-binding' domain of up to 24
repeated units, and it mediates most of the protein's
binding activities. Repeats 13-24 are especially active,
with known sites of interaction for the Na/K ATPase,
Cl/HCO(3) anion exchanger, voltage-gated sodium channel,
clathrin heavy chain and L1 family cell adhesion
molecules. The ANK repeats are found to form a
contiguous spiral stack such that ion transporters like
the anion exchanger associate in a large central cavity
formed by the ANK repeat spiral, while clathrin and cell
adhesion molecules associate with specific regions
outside this cavity.
Length = 33
Score = 40.2 bits (95), Expect = 3e-05
Identities = 14/29 (48%), Positives = 22/29 (75%)
Query: 245 TPLMIAAQEGHVGLLELLLDKGADILRED 273
TPL +AA+ GH+ +++LLL+ GAD+ D
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVNARD 32
Score = 36.8 bits (86), Expect = 5e-04
Identities = 16/32 (50%), Positives = 20/32 (62%)
Query: 161 QGRTPLSLAAGRGHMEAVRTLVAAGASLGRTD 192
G TPL LAA GH+E V+ L+ AGA + D
Sbjct: 1 DGNTPLHLAARNGHLEVVKLLLEAGADVNARD 32
Score = 32.1 bits (74), Expect = 0.021
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 212 SPLMLAVKEGHWATAEKLLQHHAPLDQTD 240
+PL LA + GH + LL+ A ++ D
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVNARD 32
Score = 30.2 bits (69), Expect = 0.11
Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Query: 275 EGLTALSWACMRGRIQAVTYLLDRDRGAMIEHVD 308
+G T L A G ++ V LL + GA + D
Sbjct: 1 DGNTPLHLAARNGHLEVVKLLL--EAGADVNARD 32
Score = 27.1 bits (61), Expect = 1.3
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 132 ALCLFAHEGNSEMIALLLEFHACIDLAN 159
L L A G+ E++ LLLE A ++ +
Sbjct: 5 PLHLAARNGHLEVVKLLLEAGADVNARD 32
Score = 24.8 bits (55), Expect = 9.4
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 310 NGLRPLDRAISCRNVPVVQCFLRKGAKL 337
+G PL A ++ VV+ L GA +
Sbjct: 1 DGNTPLHLAARNGHLEVVKLLLEAGADV 28
>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional.
Length = 477
Score = 44.1 bits (104), Expect = 7e-05
Identities = 45/189 (23%), Positives = 74/189 (39%), Gaps = 18/189 (9%)
Query: 96 LCSLRNVYSPNVKVSRLLLLSGADANHITEFLGAAPALCLFAHEGNSEMIALLLEFHACI 155
+ ++++LLL GAD N G L + + LLL + A +
Sbjct: 136 IDKKSKDDIIEAEITKLLLSYGADINMKDRHKGNTA-LHYATENKDQRLTELLLSYGANV 194
Query: 156 DLANSQGRTPLSLAAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPLM 215
++ + +PL A + V L+ GAS D G L + G+ ++ L
Sbjct: 195 NIPDKTNNSPLHHAVKHYNKPIVHILLENGASTDARDKCGNTPLHISV--GYCKDYDILK 252
Query: 216 LAVKEGHWATAEKLLQHHAPLD-QTDGSHKTPLMIAAQEGHVGLLELLLDKGADILREDG 274
L LL+H ++ ++ T L + + L+LLL+ GADI +
Sbjct: 253 L------------LLEHGVDVNAKSYILGLTALHSSIKSERK--LKLLLEYGADINSLNS 298
Query: 275 EGLTALSWA 283
LT LS A
Sbjct: 299 YKLTPLSSA 307
Score = 36.8 bits (85), Expect = 0.014
Identities = 26/79 (32%), Positives = 37/79 (46%), Gaps = 3/79 (3%)
Query: 258 LLELLLDKGADI-LREDGEGLTALSWACMRGRIQAVTYLLDRDRGAMIEHVDINGLRPLD 316
+ +LLL GADI +++ +G TAL +A + LL GA + D PL
Sbjct: 149 ITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSY--GANVNIPDKTNNSPLH 206
Query: 317 RAISCRNVPVVQCFLRKGA 335
A+ N P+V L GA
Sbjct: 207 HAVKHYNKPIVHILLENGA 225
Score = 32.9 bits (75), Expect = 0.26
Identities = 18/87 (20%), Positives = 36/87 (41%), Gaps = 6/87 (6%)
Query: 246 PLMIAAQEGHVGLLELLLDKGADILREDGEGLTALSWACMRGRIQAVTYLLDRDRGAMIE 305
PL A + ++ +++ LL +G ++ + D LT L C + ++ I
Sbjct: 40 PLHQAVEARNLDVVKSLLTRGHNVNQPDHRDLTPLHIICKEPNKLGMKEMI-----RSIN 94
Query: 306 HVDI-NGLRPLDRAISCRNVPVVQCFL 331
+ L + A + RNV + + L
Sbjct: 95 KCSVFYTLVAIKDAFNNRNVEIFKIIL 121
Score = 30.2 bits (68), Expect = 1.9
Identities = 34/139 (24%), Positives = 57/139 (41%), Gaps = 18/139 (12%)
Query: 212 SPLMLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILR 271
+ L A + E LL + A ++ D ++ +PL A + + ++ +LL+ GA
Sbjct: 170 TALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHAVKHYNKPIVHILLENGASTDA 229
Query: 272 EDGEGLTALSWACMRGRIQAVTYLLDRDRGAM-IEH-VDIN------GLRPLDRAISCRN 323
D G T L +V Y D D + +EH VD+N GL L S ++
Sbjct: 230 RDKCGNTPLHI--------SVGYCKDYDILKLLLEHGVDVNAKSYILGLTALH--SSIKS 279
Query: 324 VPVVQCFLRKGAKLGPTTW 342
++ L GA +
Sbjct: 280 ERKLKLLLEYGADINSLNS 298
>gnl|CDD|140343 PTZ00322, PTZ00322,
6-phosphofructo-2-kinase/fructose-2,6-biphosphatase;
Provisional.
Length = 664
Score = 42.6 bits (100), Expect = 2e-04
Identities = 29/100 (29%), Positives = 43/100 (43%), Gaps = 15/100 (15%)
Query: 133 LCLFAHEGNSEMIALLLEFHACIDLANSQGRTPLSLAAGRGHMEAVRTLVAAGASLGRTD 192
LC A G++ +LL A + + GRTPL +A GH++ VR L+ GA D
Sbjct: 86 LCQLAASGDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLD 145
Query: 193 TTGRCALVHAARGGHLQNLSPLMLAVKEGHWATAEKLLQH 232
G+ +PL LA + G + L +H
Sbjct: 146 KDGK---------------TPLELAEENGFREVVQLLSRH 170
Score = 39.9 bits (93), Expect = 0.002
Identities = 30/88 (34%), Positives = 39/88 (44%), Gaps = 6/88 (6%)
Query: 215 MLAVKEGHWAT------AEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGAD 268
ML V+ A A LL A + D +TPL IA GHV ++ +LL+ GAD
Sbjct: 81 MLTVELCQLAASGDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGAD 140
Query: 269 ILREDGEGLTALSWACMRGRIQAVTYLL 296
D +G T L A G + V L
Sbjct: 141 PTLLDKDGKTPLELAEENGFREVVQLLS 168
Score = 39.9 bits (93), Expect = 0.002
Identities = 31/84 (36%), Positives = 39/84 (46%), Gaps = 3/84 (3%)
Query: 249 IAAQEGHVGLLELLLDKGADILREDGEGLTALSWACMRGRIQAVTYLLDRDRGAMIEHVD 308
+AA VG +LL GAD D +G T L AC G +Q V LL + GA +D
Sbjct: 89 LAASGDAVGA-RILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLL--EFGADPTLLD 145
Query: 309 INGLRPLDRAISCRNVPVVQCFLR 332
+G PL+ A VVQ R
Sbjct: 146 KDGKTPLELAEENGFREVVQLLSR 169
Score = 37.6 bits (87), Expect = 0.010
Identities = 27/71 (38%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 111 RLLLLSGADANHITEFLGAAPALCLFAHEGNSEMIALLLEFHACIDLANSQGRTPLSLAA 170
R+LL GAD N ++ G P L + G+ +++ +LLEF A L + G+TPL LA
Sbjct: 99 RILLTGGADPNCR-DYDGRTP-LHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAE 156
Query: 171 GRGHMEAVRTL 181
G E V+ L
Sbjct: 157 ENGFREVVQLL 167
Score = 31.8 bits (72), Expect = 0.67
Identities = 26/94 (27%), Positives = 35/94 (37%), Gaps = 15/94 (15%)
Query: 170 AGRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPLMLAVKEGHWATAEKL 229
A G R L+ GA D GR +PL +A GH L
Sbjct: 90 AASGDAVGARILLTGGADPNCRDYDGR---------------TPLHIACANGHVQVVRVL 134
Query: 230 LQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLL 263
L+ A D KTPL +A + G +++LL
Sbjct: 135 LEFGADPTLLDKDGKTPLELAEENGFREVVQLLS 168
>gnl|CDD|197603 smart00248, ANK, ankyrin repeats. Ankyrin repeats are about 33
amino acids long and occur in at least four consecutive
copies. They are involved in protein-protein
interactions. The core of the repeat seems to be an
helix-loop-helix structure.
Length = 30
Score = 36.4 bits (85), Expect = 6e-04
Identities = 15/26 (57%), Positives = 23/26 (88%)
Query: 244 KTPLMIAAQEGHVGLLELLLDKGADI 269
+TPL +AA+ G++ +++LLLDKGADI
Sbjct: 3 RTPLHLAAENGNLEVVKLLLDKGADI 28
Score = 30.2 bits (69), Expect = 0.096
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 161 QGRTPLSLAAGRGHMEAVRTLVAAGASL 188
GRTPL LAA G++E V+ L+ GA +
Sbjct: 1 DGRTPLHLAAENGNLEVVKLLLDKGADI 28
Score = 26.4 bits (59), Expect = 2.3
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 275 EGLTALSWACMRGRIQAVTYLLDRD 299
+G T L A G ++ V LLD+
Sbjct: 1 DGRTPLHLAAENGNLEVVKLLLDKG 25
Score = 25.6 bits (57), Expect = 4.0
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 212 SPLMLAVKEGHWATAEKLLQHHAPLD 237
+PL LA + G+ + LL A ++
Sbjct: 4 TPLHLAAENGNLEVVKLLLDKGADIN 29
>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat. Ankyrins are multifunctional
adaptors that link specific proteins to the
membrane-associated, spectrin- actin cytoskeleton. This
repeat-domain is a 'membrane-binding' domain of up to 24
repeated units, and it mediates most of the protein's
binding activities.
Length = 30
Score = 34.2 bits (79), Expect = 0.004
Identities = 14/25 (56%), Positives = 21/25 (84%)
Query: 245 TPLMIAAQEGHVGLLELLLDKGADI 269
TPL +AA+ G++ L++LLL+ GADI
Sbjct: 4 TPLHLAARNGNLELVKLLLEHGADI 28
Score = 29.5 bits (67), Expect = 0.16
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 162 GRTPLSLAAGRGHMEAVRTLVAAGASL 188
G TPL LAA G++E V+ L+ GA +
Sbjct: 2 GNTPLHLAARNGNLELVKLLLEHGADI 28
Score = 27.6 bits (62), Expect = 0.91
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 212 SPLMLAVKEGHWATAEKLLQHHAPLD 237
+PL LA + G+ + LL+H A ++
Sbjct: 4 TPLHLAARNGNLELVKLLLEHGADIN 29
Score = 26.8 bits (60), Expect = 1.7
Identities = 11/36 (30%), Positives = 15/36 (41%), Gaps = 7/36 (19%)
Query: 275 EGLTALSWACMRGRIQAVTYLLDRDRGAMIEHVDIN 310
+G T L A G ++ V LL+ DIN
Sbjct: 1 DGNTPLHLAARNGNLELVKLLLEH-------GADIN 29
Score = 24.9 bits (55), Expect = 7.1
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 310 NGLRPLDRAISCRNVPVVQCFLRKGAKL 337
+G PL A N+ +V+ L GA +
Sbjct: 1 DGNTPLHLAARNGNLELVKLLLEHGADI 28
>gnl|CDD|222931 PHA02798, PHA02798, ankyrin-like protein; Provisional.
Length = 489
Score = 36.0 bits (83), Expect = 0.028
Identities = 39/182 (21%), Positives = 78/182 (42%), Gaps = 32/182 (17%)
Query: 102 VYSPNVKVSRL-LLLSGADANHITEFLGAAPALCLFA---HEGN--SEMIALLLEFHACI 155
+S NVK+S + LL+ + N I +F + ++++ L + A +
Sbjct: 11 TFSDNVKLSTVKLLIKSCNPNEIVN------EYSIFQKYLQRDSPSTDIVKLFINLGANV 64
Query: 156 DLANSQGRTPL-----SLAAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQN 210
+ +++ TPL ++ + ++ V+ L+ GA + + ++ G L G++ N
Sbjct: 65 NGLDNEYSTPLCTILSNIKDYKHMLDIVKILIENGADINKKNSDGETPLYCLLSNGYINN 124
Query: 211 LSPLMLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGH---VGLLELLLDKGA 267
L L+ ++ G T D T L + Q H + +++LLL+KG
Sbjct: 125 LEILLFMIENGADTTL------------LDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGV 172
Query: 268 DI 269
DI
Sbjct: 173 DI 174
Score = 31.7 bits (72), Expect = 0.66
Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 13/88 (14%)
Query: 229 LLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLL---DKGADILREDGEGLTALSWACM 285
L+++ A +++ + +TPL G++ LE+LL + GAD D +G T L
Sbjct: 95 LIENGADINKKNSDGETPLYCLLSNGYINNLEILLFMIENGADTTLLDKDGFTMLQVYLQ 154
Query: 286 RG---RIQAVTYLLDRDRGAMIEHVDIN 310
I+ + LL++ VDIN
Sbjct: 155 SNHHIDIEIIKLLLEKG-------VDIN 175
>gnl|CDD|233161 TIGR00870, trp, transient-receptor-potential calcium channel
protein. The Transient Receptor Potential Ca2+ Channel
(TRP-CC) Family (TC. 1.A.4)The TRP-CC family has also
been called the store-operated calcium channel (SOC)
family. The prototypical members include the Drosophila
retinal proteinsTRP and TRPL (Montell and Rubin, 1989;
Hardie and Minke, 1993). SOC members of the family
mediate the entry of extracellular Ca2+ into cells in
responseto depletion of intracellular Ca2+ stores
(Clapham, 1996) and agonist stimulated production of
inositol-1,4,5 trisphosphate (IP3). One member of the
TRP-CCfamily, mammalian Htrp3, has been shown to form a
tight complex with the IP3 receptor (TC #1.A.3.2.1).
This interaction is apparently required for IP3
tostimulate Ca2+ release via Htrp3. The vanilloid
receptor subtype 1 (VR1), which is the receptor for
capsaicin (the ?hot? ingredient in chili peppers) and
servesas a heat-activated ion channel in the pain
pathway (Caterina et al., 1997), is also a member of
this family. The stretch-inhibitable non-selective
cation channel(SIC) is identical to the vanilloid
receptor throughout all of its first 700 residues, but
it exhibits a different sequence in its last 100
residues. VR1 and SICtransport monovalent cations as
well as Ca2+. VR1 is about 10x more permeable to Ca2+
than to monovalent ions. Ca2+ overload probably causes
cell deathafter chronic exposure to capsaicin.
(McCleskey and Gold, 1999) [Transport and binding
proteins, Cations and iron carrying compounds].
Length = 743
Score = 35.4 bits (82), Expect = 0.042
Identities = 31/151 (20%), Positives = 56/151 (37%), Gaps = 13/151 (8%)
Query: 124 TEFLGAAPALCLFAHEGNSEMIALLLEFHAC--IDLANSQGRTPLSLAAGRGHMEAVRTL 181
+ A A G+ + LE I+ + GR+ L +AA + L
Sbjct: 12 SPLSDEEKAFLPAAERGDLASVYRDLEEPKKLNINCPDRLGRSALFVAAIENENLELTEL 71
Query: 182 VAAGASLGRTDTTGRCALVHAARGGHLQNLSPLMLAVKEGHWATAEKLLQHHAPLDQTDG 241
+ +L G L+HA ++ + ++L + A K DQ
Sbjct: 72 LL---NLSCRGAVGD-TLLHAISLEYVDAVEAILLHLL----AAFRKSGPLELANDQYTS 123
Query: 242 SH---KTPLMIAAQEGHVGLLELLLDKGADI 269
T L +AA + +++LLL++GA +
Sbjct: 124 EFTPGITALHLAAHRQNYEIVKLLLERGASV 154
Score = 29.7 bits (67), Expect = 2.7
Identities = 32/136 (23%), Positives = 52/136 (38%), Gaps = 20/136 (14%)
Query: 217 AVKEGHWATAEKLLQHHAPLDQ--TDGSHKTPLMIAAQEG-HVGLLELLLDKGADILRED 273
A + G A+ + L+ L+ D ++ L +AA E ++ L ELLL+ D
Sbjct: 24 AAERGDLASVYRDLEEPKKLNINCPDRLGRSALFVAAIENENLELTELLLNLSCRGAVGD 83
Query: 274 GEGLTALSWACMRGRIQAVTYLL------DRDRGAMIEHVDIN------GLRPLDRAISC 321
L A + AV +L R G + D G+ L A
Sbjct: 84 -----TLLHAISLEYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHR 138
Query: 322 RNVPVVQCFLRKGAKL 337
+N +V+ L +GA +
Sbjct: 139 QNYEIVKLLLERGASV 154
Score = 29.3 bits (66), Expect = 3.9
Identities = 24/78 (30%), Positives = 33/78 (42%), Gaps = 14/78 (17%)
Query: 106 NVKVSRLLLLSGADAN---HITEFL----------GAAPALCLFAHEGNSEMIALLLEFH 152
N ++ +LLL GA F+ G +P L A G+ ++ALL E
Sbjct: 140 NYEIVKLLLERGASVPARACGDFFVKSQGVDSFYHGESP-LNAAACLGSPSIVALLSEDP 198
Query: 153 ACIDLANSQGRTPLSLAA 170
A I A+S G T L L
Sbjct: 199 ADILTADSLGNTLLHLLV 216
Score = 29.3 bits (66), Expect = 3.9
Identities = 43/154 (27%), Positives = 56/154 (36%), Gaps = 29/154 (18%)
Query: 132 ALCLFAHEGNSEMIALLLEFHA-------CIDLANSQ-------GRTPLSLAAGRGHMEA 177
AL L AH N E++ LLLE A SQ G +PL+ AA G
Sbjct: 131 ALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSI 190
Query: 178 VRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPLMLAVKE----GHWATAEKLLQHH 233
V L A + D+ G L HL + A E + A LL
Sbjct: 191 VALLSEDPADILTADSLGNTLL-------HLLVMENEFKAEYEELSCQMYNFALSLLDKL 243
Query: 234 APLDQ----TDGSHKTPLMIAAQEGHVGLLELLL 263
+ + TPL +AA+EG + L L L
Sbjct: 244 RDSKELEVILNHQGLTPLKLAAKEGRIVLFRLKL 277
>gnl|CDD|165195 PHA02859, PHA02859, ankyrin repeat protein; Provisional.
Length = 209
Score = 34.0 bits (78), Expect = 0.077
Identities = 14/63 (22%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Query: 106 NVKVSRLLLLSGADANHITEFLGAAPALCLFAHEGN--SEMIALLLEFHACIDLANSQGR 163
NV++ + L+ +GAD N T + + N E++ +L++ + I + G+
Sbjct: 65 NVEILKFLIENGADVNFKTRDNNLSALHHYLSFNKNVEPEILKILIDSGSSITEEDEDGK 124
Query: 164 TPL 166
L
Sbjct: 125 NLL 127
>gnl|CDD|213997 cd12113, PHP_PolIIIA_DnaE3, Polymerase and Histidinol Phosphatase
domain of alpha-subunit of bacterial polymerase III
DnaE3. PolIIIAs that contain an N-terminal PHP domain
have been classified into four basic groups based on
genome composition, phylogenetic, and domain structural
analysis: polC, dnaE1, dnaE2, and dnaE3. The PHP (also
called histidinol phosphatase-2/HIS2) domain is
associated with several types of DNA polymerases, such
as PolIIIA and family X DNA polymerases, stand alone
histidinol phosphate phosphatases (HisPPases), and a
number of uncharacterized protein families. DNA
polymerase III holoenzyme is one of the five eubacterial
DNA polymerases that is responsible for the replication
of the DNA duplex. The alpha subunit of DNA polymerase
III core enzyme catalyzes the reaction for polymerizing
both DNA strands. The PolIIIA PHP domain has four
conserved sequence motifs and contains an invariant
histidine that is involved in metal ion coordination,
and like other PHP structures, the PolIIIA PHP exhibits
a distorted (beta/alpha) 7 barrel and coordinates up to
3 metals. Initially, it was proposed that PHP region
might be involved in pyrophosphate hydrolysis, but such
an activity has not been found. It has been shown that
the PHP of PolIIIA has a trinuclear metal complex and is
capable of proofreading activity. Bacterial genome
replication and DNA repair mechanisms is related to the
GC content of its genomes. There is a correlation
between GC content variations and the dimeric
combinations of PolIIIA subunits. Eubacteria can be
grouped into different GC variable groups: the
full-spectrum or dnaE1 group, the high-GC or dnaE2-dnaE1
group, and the low GC or polC-dnaE3 group.
Length = 283
Score = 32.0 bits (74), Expect = 0.38
Identities = 22/52 (42%), Positives = 29/52 (55%), Gaps = 9/52 (17%)
Query: 264 DKGADILREDGEGLTALSWACMRGRIQAVTYLLDRD----RGAMIEHVDING 311
DK ++L + EGL ALS AC+ G I LL+ D R A +E+ DI G
Sbjct: 120 DK--ELLAKYSEGLIALS-ACLAGEIP--QLLLNGDEEEAREAALEYRDIFG 166
>gnl|CDD|213371 cd12837, EcCorA-like_u1, uncharacterized subgroup of the
Escherichia coli Mg2+ transporter CorA_like subfamily.
A uncharacterized subgroup of the Escherichia coli
CorA-Salmonella typhimurium ZntB_like family
(EcCorA_ZntB-like) family of the MIT superfamily of
essential membrane proteins involved in transporting
divalent cations (uptake or efflux) across membranes.
The EcCorA_ZntB-like family includes the Mg2+
transporters Escherichia coli and Salmonella typhimurium
CorAs, which can also transport Co2+, and Ni2+.
Structures of the intracellular domain of
EcCorA_ZntB-like family members, Vibrio parahaemolyticus
and Salmonella typhimurium ZntB, form funnel-shaped
homopentamers, the tip of the funnel is formed from two
C-terminal transmembrane (TM) helices from each monomer,
and the large opening of the funnel from the N-terminal
cytoplasmic domains. The GMN signature motif of the MIT
superfamily occurs just after TM1, mutation within this
motif is known to abolish Mg2+ transport through
Salmonella typhimurium CorA. Natural variants such as
GVN and GIN, such as occur in some ZntB family proteins,
may be associated with the transport of different
divalent cations, such as zinc and cadmium. The
functional diversity of MIT transporters may also be due
to minor structural differences regulating gating,
substrate selection, and transport.
Length = 298
Score = 31.0 bits (71), Expect = 0.78
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 256 VGLLELLLDKGADILREDGEGLTALS 281
+GLLE ++D+ AD+L G L LS
Sbjct: 108 LGLLEAIVDRLADVLERVGADLDRLS 133
>gnl|CDD|165157 PHA02795, PHA02795, ankyrin-like protein; Provisional.
Length = 437
Score = 31.1 bits (70), Expect = 0.87
Identities = 18/56 (32%), Positives = 28/56 (50%)
Query: 236 LDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILREDGEGLTALSWACMRGRIQA 291
++Q D +T L A G++ L+ LL+ GA++ G T L A RG + A
Sbjct: 214 INQLDAGGRTLLYRAIYAGYIDLVSWLLENGANVNAVMSNGYTCLDVAVDRGSVIA 269
>gnl|CDD|236984 PRK11789, PRK11789, N-acetyl-anhydromuranmyl-L-alanine amidase;
Provisional.
Length = 185
Score = 30.2 bits (69), Expect = 1.0
Identities = 18/39 (46%), Positives = 21/39 (53%), Gaps = 11/39 (28%)
Query: 9 HPSFRE---------WLIRRDEGESNKFL-CDLRAGHAG 37
HP F E +LIRRD GE +F+ D RA HAG
Sbjct: 63 HPYFAEIAGLRVSAHFLIRRD-GEIVQFVSFDDRAWHAG 100
>gnl|CDD|219538 pfam07728, AAA_5, AAA domain (dynein-related subfamily). This Pfam
entry includes some of the AAA proteins not detected by
the pfam00004 model.
Length = 135
Score = 28.8 bits (65), Expect = 2.1
Identities = 10/36 (27%), Positives = 15/36 (41%)
Query: 225 TAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLE 260
T E L PL+ AA+EG + +L+
Sbjct: 38 TEEDLKGRRNIDPGGASWVDGPLVRAAREGEIAVLD 73
>gnl|CDD|222954 PHA02989, PHA02989, ankyrin repeat protein; Provisional.
Length = 494
Score = 29.7 bits (67), Expect = 2.5
Identities = 17/57 (29%), Positives = 26/57 (45%)
Query: 245 TPLMIAAQEGHVGLLELLLDKGADILREDGEGLTALSWACMRGRIQAVTYLLDRDRG 301
PL+I+A+ + LL G DI +G T L++A G I + +L G
Sbjct: 258 NPLLISAKVDNYEAFNYLLKLGDDIYNVSKDGDTVLTYAIKHGNIDMLNRILQLKPG 314
>gnl|CDD|235868 PRK06826, dnaE, DNA polymerase III DnaE; Reviewed.
Length = 1151
Score = 29.5 bits (67), Expect = 3.4
Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 3/29 (10%)
Query: 268 DILREDGEGLTALSWACMRGRIQAVTYLL 296
++L+E EGL ALS AC+ G + Y+L
Sbjct: 124 ELLKEHSEGLIALS-ACLAGEVPR--YIL 149
>gnl|CDD|182327 PRK10241, PRK10241, hydroxyacylglutathione hydrolase; Provisional.
Length = 251
Score = 28.6 bits (64), Expect = 3.9
Identities = 25/98 (25%), Positives = 34/98 (34%), Gaps = 21/98 (21%)
Query: 191 TDTTGRCALVHAARGGHLQNLSPLMLAVKEGHWATAEKLLQHHAPLDQTDG----SHKTP 246
D GRC +V P++ A+ E +W L HH D G K P
Sbjct: 18 NDEAGRCLIVDPGEA------EPVLNAIAENNWQPEAIFLTHHHH-DHVGGVKELVEKFP 70
Query: 247 LMI--AAQEGHVGLLELLLDKGADILREDGEGLTALSW 282
++ QE DKG + +DGE L
Sbjct: 71 QIVVYGPQETQ--------DKGTTQVVKDGETAFVLGH 100
>gnl|CDD|183983 PRK13339, PRK13339, malate:quinone oxidoreductase; Reviewed.
Length = 497
Score = 28.9 bits (65), Expect = 4.3
Identities = 13/36 (36%), Positives = 16/36 (44%), Gaps = 8/36 (22%)
Query: 68 KNMTLVKYSSRDLQAHWISSVCQSPAQALCSLRNVY 103
KNM L+KYS I V Q+ + LR Y
Sbjct: 353 KNMPLIKYS--------IDQVMQTKEGRMNHLRTFY 380
>gnl|CDD|206227 pfam14057, GGGtGRT, GGGtGRT protein. This family of proteins is
functionally uncharacterized. This family of proteins is
found in bacteria and archaea. Proteins in this family
are approximately 330 amino acids in length and contain
many highly conserved residues including a GGGtGRT
motif.
Length = 328
Score = 28.6 bits (64), Expect = 4.9
Identities = 19/41 (46%), Positives = 23/41 (56%), Gaps = 8/41 (19%)
Query: 161 QGRTPLSLAAGRGHMEAVRTL----VAAG-ASLGRTDTTGR 196
G+ S+A+G G RTL +AAG AS G TDT GR
Sbjct: 247 AGKKYFSVASGGG---TGRTLHPDNMAAGPASYGMTDTMGR 284
>gnl|CDD|165154 PHA02791, PHA02791, ankyrin-like protein; Provisional.
Length = 284
Score = 28.5 bits (63), Expect = 4.9
Identities = 27/110 (24%), Positives = 48/110 (43%), Gaps = 17/110 (15%)
Query: 190 RTDTTGRCALVHAARGGHLQNLSPLMLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMI 249
+ D G AL +A +++ + L+ A + LL++ PL Q
Sbjct: 25 KADVHGHSALYYAIADNNVRLVCTLLNA------GALKNLLENEFPLHQ----------- 67
Query: 250 AAQEGHVGLLELLLDKGADILREDGEGLTALSWACMRGRIQAVTYLLDRD 299
AA ++++LL G D + D +G TAL +A G +Q V + ++
Sbjct: 68 AATLEDTKIVKILLFSGMDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKN 117
>gnl|CDD|109889 pfam00851, Peptidase_C6, Helper component proteinase. This protein
is found in genome polyproteins of potyviruses.
Length = 453
Score = 28.4 bits (64), Expect = 6.6
Identities = 11/28 (39%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
Query: 54 SLELGHHILKAHVYKNMTLVKYSSRDLQ 81
SL G+H+LKA+ L++++S DL+
Sbjct: 419 SLSTGYHVLKANTVSQ--LIQFASNDLE 444
>gnl|CDD|236422 PRK09234, fbiC, FO synthase; Reviewed.
Length = 843
Score = 28.4 bits (64), Expect = 6.8
Identities = 15/56 (26%), Positives = 19/56 (33%)
Query: 152 HACIDLANSQGRTPLSLAAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGH 207
H ID + G E++R V G + R DT AL A R
Sbjct: 430 HTAIDTEGRTTDRRSDFDSAYGDWESIREQVHEGRAPERIDTDVLAALRAAERDPA 485
>gnl|CDD|169719 PRK09212, PRK09212, pyruvate dehydrogenase subunit beta; Validated.
Length = 327
Score = 28.1 bits (63), Expect = 7.8
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 267 ADILREDGEGLTALSWACMRGRIQAVTYLLDRDRGAMIEHVDINGLRPLDR 317
A ILRE G +T ++++ LL+++ G +E +D+ LRPLD
Sbjct: 195 AAILRE-GSDVTIVTFSIQVKLALEAAELLEKE-GISVEVIDLRTLRPLDT 243
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional.
Length = 3151
Score = 28.4 bits (63), Expect = 8.5
Identities = 25/80 (31%), Positives = 33/80 (41%), Gaps = 4/80 (5%)
Query: 122 HITEFLGAAPAL---CLFAHEGNSEMIALLLEFHAC-IDLANSQGRTPLSLAAGRGHMEA 177
+ E L P+L F G++E + L A D+ + G PL LAA
Sbjct: 1459 RLAEDLNGVPSLRRYVPFFRRGHAEYLELCDRLDALRADVHRALGGVPLDLAAAAEQTSR 1518
Query: 178 VRTLVAAGASLGRTDTTGRC 197
+R AA A L RT T C
Sbjct: 1519 LRNDPAAAAELVRTGVTLAC 1538
>gnl|CDD|222492 pfam14009, DUF4228, Domain of unknown function (DUF4228). This
domain is found in plants. The function is not known.
Length = 181
Score = 27.3 bits (61), Expect = 8.6
Identities = 9/36 (25%), Positives = 12/36 (33%), Gaps = 6/36 (16%)
Query: 24 SNKFLCDLRAGHAGIAFRLSRLQAPLDADKSLELGH 59
F+CD + + G L D LE G
Sbjct: 44 PGHFVCDSDSLYIGRRI------PALPPDDELERGQ 73
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.135 0.414
Gapped
Lambda K H
0.267 0.0786 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 18,185,119
Number of extensions: 1754648
Number of successful extensions: 1553
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1459
Number of HSP's successfully gapped: 112
Length of query: 356
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 258
Effective length of database: 6,590,910
Effective search space: 1700454780
Effective search space used: 1700454780
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (26.8 bits)