RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14202
(356 letters)
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein;
2.70A {Homo sapiens} SCOP: d.211.1.1
Length = 437
Score = 160 bits (408), Expect = 8e-46
Identities = 64/230 (27%), Positives = 99/230 (43%), Gaps = 19/230 (8%)
Query: 106 NVKVSRLLLLSGADANHITEFLGAAPALCLFAHEGNSEMIALLLEFHACIDLANSQGRTP 165
+ +V++ LL + A N + P L A G++ M+ LLLE +A +LA + G TP
Sbjct: 59 HTEVAKYLLQNKAKVNAKAKD-DQTP-LHCAARIGHTNMVKLLLENNANPNLATTAGHTP 116
Query: 166 LSLAAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPLMLAVKEGHWAT 225
L +AA GH+E V L+ AS G +PL +A K G
Sbjct: 117 LHIAAREGHVETVLALLEKEASQACMTKKGF---------------TPLHVAAKYGKVRV 161
Query: 226 AEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILREDGEGLTALSWACM 285
AE LL+ A + + TPL +A ++ +++LLL +G G T L A
Sbjct: 162 AELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAK 221
Query: 286 RGRIQAVTYLLDRDRGAMIEHVDINGLRPLDRAISCRNVPVVQCFLRKGA 335
+ +++ LL G + G+ PL A + +V L K A
Sbjct: 222 QNQVEVARSLL--QYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQA 269
Score = 160 bits (407), Expect = 2e-45
Identities = 67/230 (29%), Positives = 96/230 (41%), Gaps = 19/230 (8%)
Query: 106 NVKVSRLLLLSGADANHITEFLGAAPALCLFAHEGNSEMIALLLEFHACIDLANSQGRTP 165
V+V+ LLL A N + G P L + H N +++ LLL G TP
Sbjct: 158 KVRVAELLLERDAHPNAAGKN-GLTP-LHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTP 215
Query: 166 LSLAAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPLMLAVKEGHWAT 225
L +AA + +E R+L+ G S G +PL LA +EGH
Sbjct: 216 LHIAAKQNQVEVARSLLQYGGSANAESVQGV---------------TPLHLAAQEGHAEM 260
Query: 226 AEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILREDGEGLTALSWACM 285
LL A + + S TPL + AQEGHV + ++L+ G + G T L A
Sbjct: 261 VALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASH 320
Query: 286 RGRIQAVTYLLDRDRGAMIEHVDINGLRPLDRAISCRNVPVVQCFLRKGA 335
G I+ V +LL A + G PL +A + +V L+ GA
Sbjct: 321 YGNIKLVKFLL--QHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGA 368
Score = 156 bits (396), Expect = 5e-44
Identities = 66/230 (28%), Positives = 93/230 (40%), Gaps = 19/230 (8%)
Query: 106 NVKVSRLLLLSGADANHITEFLGAAPALCLFAHEGNSEMIALLLEFHACIDLANSQGRTP 165
++ + + LL GA N P L + A G++E+ LL+ A ++ +TP
Sbjct: 26 HLPIVKNLLQRGASPNVSNVK-VETP-LHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTP 83
Query: 166 LSLAAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPLMLAVKEGHWAT 225
L AA GH V+ L+ A+ T G +PL +A +EGH T
Sbjct: 84 LHCAARIGHTNMVKLLLENNANPNLATTAGH---------------TPLHIAAREGHVET 128
Query: 226 AEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILREDGEGLTALSWACM 285
LL+ A TPL +AA+ G V + ELLL++ A GLT L A
Sbjct: 129 VLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVH 188
Query: 286 RGRIQAVTYLLDRDRGAMIEHVDINGLRPLDRAISCRNVPVVQCFLRKGA 335
+ V LL RG NG PL A V V + L+ G
Sbjct: 189 HNNLDIVKLLL--PRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGG 236
Score = 152 bits (386), Expect = 2e-42
Identities = 62/219 (28%), Positives = 96/219 (43%), Gaps = 19/219 (8%)
Query: 117 GADANHITEFLGAAPALCLFAHEGNSEMIALLLEFHACIDLANSQGRTPLSLAAGRGHME 176
G E G P L + + G+ ++ LL+ A +++N + TPL +AA GH E
Sbjct: 4 GISGGGGGES-GLTP-LHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTE 61
Query: 177 AVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPLMLAVKEGHWATAEKLLQHHAPL 236
+ L+ A + + L AAR GH + LL+++A
Sbjct: 62 VAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTN---------------MVKLLLENNANP 106
Query: 237 DQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILREDGEGLTALSWACMRGRIQAVTYLL 296
+ + TPL IAA+EGHV + LL+K A +G T L A G+++ LL
Sbjct: 107 NLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLL 166
Query: 297 DRDRGAMIEHVDINGLRPLDRAISCRNVPVVQCFLRKGA 335
+R A NGL PL A+ N+ +V+ L +G
Sbjct: 167 --ERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGG 203
Score = 151 bits (383), Expect = 4e-42
Identities = 69/234 (29%), Positives = 96/234 (41%), Gaps = 27/234 (11%)
Query: 106 NVKVSRLLLLSGADANHITEFLGAAPALCLFAHEGNSEMIALLLEFHACIDLANSQGRTP 165
V+V+R LL G AN + G P L L A EG++EM+ALLL A +L N G TP
Sbjct: 224 QVEVARSLLQYGGSANAESVQ-GVTP-LHLAAQEGHAEMVALLLSKQANGNLGNKSGLTP 281
Query: 166 LSLAAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPLMLAVKEGHWAT 225
L L A GH+ L+ G + T G +PL +A G+
Sbjct: 282 LHLVAQEGHVPVADVLIKHGVMVDATTRMGY---------------TPLHVASHYGNIKL 326
Query: 226 AEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILREDGEGLTALSWACM 285
+ LLQH A ++ +PL AAQ+GH ++ LLL GA +G T L+ A
Sbjct: 327 VKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKR 386
Query: 286 RGRIQAVTYLLDR-DRGAMIEHVDINGLRPLDRAISCRNVPVVQCFLRKGAKLG 338
G I L D + + D + + + V L G
Sbjct: 387 LGYISVTDVLKVVTDETSFVLVSDKHRMSFPE---------TVDEILDVSEDEG 431
Score = 87.2 bits (217), Expect = 4e-19
Identities = 25/104 (24%), Positives = 40/104 (38%), Gaps = 2/104 (1%)
Query: 232 HHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILREDGEGLTALSWACMRGRIQA 291
S TPL +A+ GH+ +++ LL +GA + + T L A G +
Sbjct: 3 PGISGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEV 62
Query: 292 VTYLLDRDRGAMIEHVDINGLRPLDRAISCRNVPVVQCFLRKGA 335
YLL A + + PL A + +V+ L A
Sbjct: 63 AKYLL--QNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNA 104
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription
regulation, autoantibody; 2.58A {Homo sapiens}
Length = 261
Score = 152 bits (386), Expect = 3e-44
Identities = 43/216 (19%), Positives = 77/216 (35%), Gaps = 22/216 (10%)
Query: 137 AHEGNSEMIALLLEFHACIDLANSQGRTPLSLAAGRGHMEAVRTLVAAGASLGRTDTTGR 196
A G+ + L+ +++ + +PL A GH+ V+ L+ GA +
Sbjct: 11 AIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWH 70
Query: 197 CALVHAARGGHLQ-----------------NLSPLMLAVKEGHWATAEKLLQHHAPLDQT 239
L +A G SP+ A + GH L+ + +D
Sbjct: 71 TPLFNACVSGSWDCVNLLLQHGASVQPESDLASPIHEAARRGHVECVNSLIAYGGNIDHK 130
Query: 240 DGSHKTPLMIAAQEGHVGLLELLLDKGADILREDGEGLTALSWACMRGRIQAVTYLLDRD 299
TPL +A + ++ LL+ GAD+ + + L + L+ D
Sbjct: 131 ISHLGTPLYLACENQQRACVKKLLESGADV-NQGKGQDSPLHAVARTASEELACLLM--D 187
Query: 300 RGAMIEHVDINGLRPLDRAISCRNVPVVQCFLRKGA 335
GA + + G RP++ P+ Q FL +
Sbjct: 188 FGADTQAKNAEGKRPVELV--PPESPLAQLFLEREG 221
Score = 142 bits (362), Expect = 9e-41
Identities = 54/231 (23%), Positives = 93/231 (40%), Gaps = 23/231 (9%)
Query: 106 NVKVSRLLLLSGADANHITEFLGAAPALCLFAHEGNSEMIALLLEFHACIDLANSQGRTP 165
++ ++LL GA N +T P L G+ + + LLL+ A + S +P
Sbjct: 48 HLSCVKILLKHGAQVNGVTAD-WHTP-LFNACVSGSWDCVNLLLQHGASVQ-PESDLASP 104
Query: 166 LSLAAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPLMLAVKEGHWAT 225
+ AA RGH+E V +L+A G ++ + +PL LA + A
Sbjct: 105 IHEAARRGHVECVNSLIAYGGNIDHKISHLG---------------TPLYLACENQQRAC 149
Query: 226 AEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILREDGEGLTALSWACM 285
+KLL+ A ++Q G +PL A+ L LL+D GAD ++ EG +
Sbjct: 150 VKKLLESGADVNQGKG-QDSPLHAVARTASEELACLLMDFGADTQAKNAEGKRPVELVPP 208
Query: 286 RGRIQAVTYLLDRDRGAMIEHVDINGLRPLDRAISCRNVPVVQCFLRKGAK 336
+ L+R + + LR ++ + + L + K
Sbjct: 209 ESPL--AQLFLER--EGPPSLMQLCRLRIRKCFGIQQHHKITKLVLPEDLK 255
Score = 130 bits (330), Expect = 5e-36
Identities = 43/174 (24%), Positives = 70/174 (40%), Gaps = 18/174 (10%)
Query: 162 GRTPLSLAAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPLMLAVKEG 221
+P+ AA GH ++R L++ G ++ SPL A G
Sbjct: 3 DWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHV---------------SPLHEACLGG 47
Query: 222 HWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILREDGEGLTALS 281
H + + LL+H A ++ TPL A G + LLL GA + + + + + +
Sbjct: 48 HLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASV-QPESDLASPIH 106
Query: 282 WACMRGRIQAVTYLLDRDRGAMIEHVDINGLRPLDRAISCRNVPVVQCFLRKGA 335
A RG ++ V L+ G I+H + PL A + V+ L GA
Sbjct: 107 EAARRGHVECVNSLI--AYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGA 158
Score = 82.1 bits (204), Expect = 3e-18
Identities = 29/117 (24%), Positives = 46/117 (39%), Gaps = 9/117 (7%)
Query: 244 KTPLMIAAQEGHVGLLELLLDKGADILREDGEGLTALSWACMRGRIQAVTYLLDRDRGAM 303
+P+ AA GH L L+ +G + + ++ L AC+ G + V LL GA
Sbjct: 4 WSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILL--KHGAQ 61
Query: 304 IEHVDINGLRPLDRAISCRNVPVVQCFLRKGAKL-----GPTTWSMAA--GKPEVME 353
+ V + PL A + V L+ GA + + AA G E +
Sbjct: 62 VNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPIHEAARRGHVECVN 118
Score = 30.1 bits (69), Expect = 0.92
Identities = 5/83 (6%), Positives = 13/83 (15%), Gaps = 35/83 (42%)
Query: 104 SPNVKVSRLLLLSGADANHITEFLGAAPALCLFAHEGNSEMIALLLEFHACIDLANSQGR 163
P +++L L L
Sbjct: 207 PPESPLAQLFLEREGP-----------------------------------PSLMQLCRL 231
Query: 164 TPLSLAAGRGHMEAVRTLVAAGA 186
+ H + + ++
Sbjct: 232 RIRKCFGIQQHHKITKLVLPEDL 254
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and
SOCS box-containing...; ASB9, ANK repeat, L-shaped,
structural protein; 2.20A {Homo sapiens}
Length = 285
Score = 150 bits (382), Expect = 2e-43
Identities = 52/279 (18%), Positives = 92/279 (32%), Gaps = 52/279 (18%)
Query: 106 NVKVSRLLLLSGADANHI----TEFLGAAP-------------------------ALCLF 136
+ S L+ G+ + G+ P +
Sbjct: 7 HHHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEA 66
Query: 137 AHEGNSEMIALLLEFHACIDLANSQGRTPLSLAAGRGHMEAVRTLVAAGASLGRTDTTGR 196
A G+ + L+ +++ + +PL A GH+ V+ L+ GA +
Sbjct: 67 AIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWH 126
Query: 197 CALVHAARGGHLQ-----------------NLSPLMLAVKEGHWATAEKLLQHHAPLDQT 239
L +A G SP+ A + GH L+ + +D
Sbjct: 127 TPLFNACVSGSWDCVNLLLQHGASVQPESDLASPIHEAARRGHVECVNSLIAYGGNIDHK 186
Query: 240 DGSHKTPLMIAAQEGHVGLLELLLDKGADILREDGEGLTALSWACMRGRIQAVTYLLDRD 299
TPL +A + ++ LL+ GAD+ + + L + L+ D
Sbjct: 187 ISHLGTPLYLACENQQRACVKKLLESGADV-NQGKGQDSPLHAVVRTASEELACLLM--D 243
Query: 300 RGAMIEHVDINGLRPLDRAISCRNVPVVQCFL-RKGAKL 337
GA + + G RP++ P+ Q FL R+GA L
Sbjct: 244 FGADTQAKNAEGKRPVELV--PPESPLAQLFLEREGASL 280
Score = 120 bits (303), Expect = 7e-32
Identities = 37/184 (20%), Positives = 62/184 (33%), Gaps = 19/184 (10%)
Query: 168 LAAGRGHMEAVRTLVAAGASL-----GRTDTTGRCALVHAARGGHL-----------QNL 211
+ + H LV G+ + + G G +
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDW 60
Query: 212 SPLMLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILR 271
SP+ A GH + L+ ++ H +PL A GH+ +++LL GA +
Sbjct: 61 SPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNG 120
Query: 272 EDGEGLTALSWACMRGRIQAVTYLLDRDRGAMIEHVDINGLRPLDRAISCRNVPVVQCFL 331
+ T L AC+ G V LL GA ++ + P+ A +V V +
Sbjct: 121 VTADWHTPLFNACVSGSWDCVNLLL--QHGASVQPES-DLASPIHEAARRGHVECVNSLI 177
Query: 332 RKGA 335
G
Sbjct: 178 AYGG 181
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT
signaling, POL ribosylation, transferase-signaling
protein complex; 2.00A {Mus musculus}
Length = 351
Score = 151 bits (385), Expect = 3e-43
Identities = 62/239 (25%), Positives = 99/239 (41%), Gaps = 13/239 (5%)
Query: 106 NVKVSRLLLLSGADANHITEFLGAAPALCLFAHEGNSEMIALLLEFHACIDLANSQGRTP 165
V++ +LLL GAD + + G P L G+ E+ LLL+ AC++ + TP
Sbjct: 70 RVRIVQLLLQHGADVHAKDKG-GLVP-LHNACSYGHYEVTELLLKHGACVNAMDLWQFTP 127
Query: 166 LSLAAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQ------NLSPLMLAVK 219
L AA + +E L++ GA + G+ A+ A + L+ A +
Sbjct: 128 LHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAR 187
Query: 220 EGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLL---ELLLDKGADILREDGEG 276
E A +K L + SH+T L A H ELLL KGA++ ++ +
Sbjct: 188 EADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDF 247
Query: 277 LTALSWACMRGRIQAVTYLLDRDRGAMIEHVDINGLRPLDRAISCRNVPVVQCFLRKGA 335
+T L A R + L GA + +D G L RA ++ + L G+
Sbjct: 248 MTPLHVAAERAHNDVMEVLHKH--GAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGS 304
Score = 131 bits (333), Expect = 1e-35
Identities = 61/252 (24%), Positives = 89/252 (35%), Gaps = 40/252 (15%)
Query: 108 KVSRLLLLSGADANHITEFLGAAPALCLFAHEGNSEMIA-LLLEFHACIDLANSQGRTPL 166
K + L A A E+ L A GN E + LL + ++ + TPL
Sbjct: 5 KSALDLADPSAKAVLTGEY-KKDELLEA-ARSGNEEKLMALLTPLNVNCHASDGRKSTPL 62
Query: 167 SLAAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPLMLAVKEGHWATA 226
LAAG + V+ L+ GA + D G PL A GH+
Sbjct: 63 HLAAGYNRVRIVQLLLQHGADVHAKDKGGL---------------VPLHNACSYGHYEVT 107
Query: 227 EKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILREDGEGLTALSWACMR 286
E LL+H A ++ D TPL AA + V + LLL GAD + G +A+ A
Sbjct: 108 ELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTP 167
Query: 287 GRIQAVTYLLDR-------------------DRGAMIEHVDINGLRPLDRAISC---RNV 324
+ +TY + + L A++ +
Sbjct: 168 ELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRK 227
Query: 325 PVVQCFLRKGAK 336
V + LRKGA
Sbjct: 228 QVAELLLRKGAN 239
Score = 124 bits (314), Expect = 7e-33
Identities = 46/228 (20%), Positives = 71/228 (31%), Gaps = 44/228 (19%)
Query: 106 NVKVSRLLLLSGADANH-------------------ITEFLGAAPALCLFAHEGNSEMIA 146
V+V LLL GAD + +L A E + +
Sbjct: 136 RVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVK 195
Query: 147 LLLEFHACIDLANSQGRTPLSLAAGRGHM---EAVRTLVAAGASLGRTDTTGRCALVHAA 203
L T L A H + L+ GA++ +
Sbjct: 196 KTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFM------- 248
Query: 204 RGGHLQNLSPLMLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLL 263
+PL +A + H E L +H A ++ D +T L AA GH+ LLL
Sbjct: 249 --------TPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLL 300
Query: 264 DKGADILREDGEGLTALSWACMRGRIQAVTYLLDRDRGAMIEHVDING 311
G+D +G TA +AV +L + D++
Sbjct: 301 SYGSDPSIISLQGFTAAQMGN-----EAVQQIL--SESTPMRTSDVDY 341
Score = 79.1 bits (196), Expect = 1e-16
Identities = 30/155 (19%), Positives = 65/155 (41%), Gaps = 24/155 (15%)
Query: 100 RNVYSPNVKVSRLLLLSGADANHITEFLGAAPALCLFAHEGNSEMIALLLEFHACIDLAN 159
+++ +V+ LLL GA+ N + P L + A +++++ +L + A ++ +
Sbjct: 220 ASLHPKRKQVAELLLRKGANVNEKNKD-FMTP-LHVAAERAHNDVMEVLHKHGAKMNALD 277
Query: 160 SQGRTPLSLAAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPLMLAVK 219
S G+T L AA GH++ R L++ G+ G + + +
Sbjct: 278 SLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGF---------------TAAQMGNE 322
Query: 220 EGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEG 254
+++L P+ +D L+ A++ G
Sbjct: 323 -----AVQQILSESTPMRTSDV--DYRLLEASKAG 350
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat,
alternative splicing, ANK repeat, chromatin regulator,
nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP:
k.37.1.1 PDB: 3b95_A*
Length = 237
Score = 142 bits (361), Expect = 7e-41
Identities = 55/223 (24%), Positives = 85/223 (38%), Gaps = 21/223 (9%)
Query: 132 ALCLFAHEGNSEMIALLLEFHACIDLANSQGRTPLSLAAGRGHMEAVRTLVAAGASLGRT 191
L A G+ ++ +L++ A ID + RTPL AA H+EAV+ L+ AGA +
Sbjct: 14 PLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPK 73
Query: 192 DTTGRCALVHAARGGHLQ-------------------NLSPLMLAVKEGHWATAEKLLQH 232
D G L AA+ GH + +P++ A + H + LL
Sbjct: 74 DAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSK 133
Query: 233 HAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILREDGEGLTALSWACMRGRIQAV 292
+ ++ D L AA G V + E+LL D+ + G + L A R V
Sbjct: 134 GSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCV 193
Query: 293 TYLLDRDRGAMIEHVDINGLRPLDRAISCRNVPVVQCFLRKGA 335
L R + + + G PL A V +
Sbjct: 194 VLFL--SRDSDVTLKNKEGETPLQCASLNSQVWSALQMSKALQ 234
Score = 122 bits (310), Expect = 2e-33
Identities = 42/192 (21%), Positives = 79/192 (41%), Gaps = 18/192 (9%)
Query: 106 NVKVSRLLLLSGADANHITEFLGAAPALCLFAHEGNSEMIALLLEFHAC-IDLANSQGRT 164
+++ + L+ +GA + G+ L L A +G+ E++ LL ++ + G T
Sbjct: 56 HLEAVKYLIKAGALVDPKDAE-GSTC-LHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWT 113
Query: 165 PLSLAAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPLMLAVKEGHWA 224
P+ A H++ V+ L++ G+ + D L A G
Sbjct: 114 PMIWATEYKHVDLVKLLLSKGSDINIRDNEEN---------------ICLHWAAFSGCVD 158
Query: 225 TAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILREDGEGLTALSWAC 284
AE LL L + +PL IAA+E + L L + +D+ ++ EG T L A
Sbjct: 159 IAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCAS 218
Query: 285 MRGRIQAVTYLL 296
+ ++ + +
Sbjct: 219 LNSQVWSALQMS 230
Score = 122 bits (310), Expect = 2e-33
Identities = 48/184 (26%), Positives = 75/184 (40%), Gaps = 18/184 (9%)
Query: 155 IDLANSQGRTPLSLAAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPL 214
+ + R+PL AA GH++ LV AGA++ R +PL
Sbjct: 4 FKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQR---------------TPL 48
Query: 215 MLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGA-DILRED 273
M A + H + L++ A +D D T L +AA++GH +++ LL G D+ +D
Sbjct: 49 MEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQD 108
Query: 274 GEGLTALSWACMRGRIQAVTYLLDRDRGAMIEHVDINGLRPLDRAISCRNVPVVQCFLRK 333
G T + WA + V LL +G+ I D L A V + + L
Sbjct: 109 DGGWTPMIWATEYKHVDLVKLLL--SKGSDINIRDNEENICLHWAAFSGCVDIAEILLAA 166
Query: 334 GAKL 337
L
Sbjct: 167 KCDL 170
Score = 81.3 bits (202), Expect = 4e-18
Identities = 30/104 (28%), Positives = 46/104 (44%), Gaps = 2/104 (1%)
Query: 233 HAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILREDGEGLTALSWACMRGRIQAV 292
H + ++PL AA+ GHV + +L+ GA+I + T L A ++AV
Sbjct: 1 HMNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAV 60
Query: 293 TYLLDRDRGAMIEHVDINGLRPLDRAISCRNVPVVQCFLRKGAK 336
YL+ GA+++ D G L A + VVQ L G
Sbjct: 61 KYLI--KAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQM 102
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium,
SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo
sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Length = 167
Score = 137 bits (347), Expect = 1e-39
Identities = 43/176 (24%), Positives = 68/176 (38%), Gaps = 17/176 (9%)
Query: 162 GRTPLSLAAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPLMLAVKEG 221
+ A +G M + T + + TD G +PLM A G
Sbjct: 3 NSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGF---------------TPLMWAAAHG 47
Query: 222 HWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILREDGEGLTALS 281
A E LLQ+ A ++ L +A +G+ ++++LLD G D+ D G T L
Sbjct: 48 QIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLL 107
Query: 282 WACMRGRIQAVTYLLDRDRGAMIEHVDINGLRPLDRAISCRNVPVVQCFLRKGAKL 337
+A ++ V LL + GA +G +D A++ V Q KL
Sbjct: 108 YAVHGNHVKCVKMLL--ESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLKL 161
Score = 127 bits (323), Expect = 5e-36
Identities = 39/177 (22%), Positives = 65/177 (36%), Gaps = 17/177 (9%)
Query: 132 ALCLFAHEGNSEMIALLLEFHACIDLANSQGRTPLSLAAGRGHMEAVRTLVAAGASLGRT 191
++ A +G +A +E I+ + +G TPL AA G + V L+ GA
Sbjct: 6 SVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLL 65
Query: 192 DTTGRCALVHAARGGHLQNLSPLMLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAA 251
S L LA +G+ + LL +++ D + TPL+ A
Sbjct: 66 GKGRE---------------SALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAV 110
Query: 252 QEGHVGLLELLLDKGADILREDGEGLTALSWACMRGRIQAVTYLLDRDRGAMIEHVD 308
HV +++LL+ GAD E G ++ A G + +
Sbjct: 111 HGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIE--SHLLKLLQNI 165
Score = 111 bits (281), Expect = 6e-30
Identities = 34/168 (20%), Positives = 59/168 (35%), Gaps = 17/168 (10%)
Query: 106 NVKVSRLLLLSGADANHITEFLGAAPALCLFAHEGNSEMIALLLEFHACIDLANSQGRTP 165
+ + NH E G P L A G ++ LL+ A L +
Sbjct: 15 EMLYLATRIEQENVINHTDEE-GFTP-LMWAAAHGQIAVVEFLLQNGADPQLLGKGRESA 72
Query: 166 LSLAAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPLMLAVKEGHWAT 225
LSLA +G+ + V+ L+ G + D G +PL+ AV H
Sbjct: 73 LSLACSKGYTDIVKMLLDCGVDVNEYDWNGG---------------TPLLYAVHGNHVKC 117
Query: 226 AEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILRED 273
+ LL+ A S + +A G+ + +++ +L+
Sbjct: 118 VKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLKLLQNI 165
Score = 85.5 bits (213), Expect = 3e-20
Identities = 25/95 (26%), Positives = 39/95 (41%), Gaps = 2/95 (2%)
Query: 241 GSHKTPLMIAAQEGHVGLLELLLDKGADILREDGEGLTALSWACMRGRIQAVTYLLDRDR 300
G++ + A +G + L +++ I D EG T L WA G+I V +LL
Sbjct: 1 GANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLL--QN 58
Query: 301 GAMIEHVDINGLRPLDRAISCRNVPVVQCFLRKGA 335
GA + + L A S +V+ L G
Sbjct: 59 GADPQLLGKGRESALSLACSKGYTDIVKMLLDCGV 93
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription
factors, ikappab proteins; 1.86A {Homo sapiens} SCOP:
d.211.1.1 PDB: 1k1b_A
Length = 241
Score = 139 bits (352), Expect = 2e-39
Identities = 57/231 (24%), Positives = 92/231 (39%), Gaps = 29/231 (12%)
Query: 132 ALCLFAHEGNSEMIALLLEFH----ACIDLANSQGRTPLSLAAGRGHMEAVRTLVAAGAS 187
L + +GN + L+ +D+ N+ +TPL LA VR LV AGAS
Sbjct: 12 PLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGAS 71
Query: 188 LGRTDTTGRCALVHAARGGHLQ----------------------NLSPLMLAVKEGHWAT 225
D G+ A A L+ L +AV T
Sbjct: 72 PMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQET 131
Query: 226 AEKLLQHHAPLDQTDGSH-KTPLMIAAQEGHVGLLELLLDKGADILREDGEGLTALSWAC 284
+ LL+ A +D D ++PL+ A + + +++LLL GA++ + G +AL A
Sbjct: 132 VQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSAS 191
Query: 285 MRGRIQAVTYLLDRDRGAMIEHVDINGLRPLDRAISCRNVPVVQCFLRKGA 335
RG + V L+ GA + + PL A S R + +++ + A
Sbjct: 192 GRGLLPLVRTLVRS--GADSSLKNCHNDTPLMVARSRRVIDILRGKATRPA 240
Score = 117 bits (295), Expect = 4e-31
Identities = 48/201 (23%), Positives = 74/201 (36%), Gaps = 22/201 (10%)
Query: 106 NVKVSRLLLLSGADANHITEFLGAAPALCLFAHEGNSEMIALLLEFHAC----IDLANSQ 161
V RLL+ +GA + G L + + LL+ A ++ N
Sbjct: 58 LPSVVRLLVTAGASPMALDRH-GQTA-AHLACEHRSPTCLRALLDSAAPGTLDLEARNYD 115
Query: 162 GRTPLSLAAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPLMLAVKEG 221
G T L +A E V+ L+ GA + D SPL+ AV+
Sbjct: 116 GLTALHVAVNTECQETVQLLLERGADIDAVDIKSGR--------------SPLIHAVENN 161
Query: 222 HWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILREDGEGLTALS 281
+ + LLQH A ++ S + L A+ G + L+ L+ GAD ++ T L
Sbjct: 162 SLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLM 221
Query: 282 WACMRGRIQAVTYLLDRDRGA 302
A R I + R A
Sbjct: 222 VARSRRVIDILRGKA--TRPA 240
Score = 110 bits (277), Expect = 1e-28
Identities = 54/191 (28%), Positives = 78/191 (40%), Gaps = 29/191 (15%)
Query: 157 LANSQ---GRTPLSLAAGRGHMEAVRTLV----AAGASLGRTDTTGRCALVHAARGGHLQ 209
+A G TPL +A +G++ AV LV G L + +
Sbjct: 1 MATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQ------------- 47
Query: 210 NLSPLMLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGA-- 267
+PL LAV + L+ A D +T +A + L LLD A
Sbjct: 48 --TPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPG 105
Query: 268 --DILREDGEGLTALSWACMRGRIQAVTYLLDRDRGAMIEHVDIN-GLRPLDRAISCRNV 324
D+ + +GLTAL A + V LL +RGA I+ VDI G PL A+ ++
Sbjct: 106 TLDLEARNYDGLTALHVAVNTECQETVQLLL--ERGADIDAVDIKSGRSPLIHAVENNSL 163
Query: 325 PVVQCFLRKGA 335
+VQ L+ GA
Sbjct: 164 SMVQLLLQHGA 174
Score = 73.6 bits (182), Expect = 3e-15
Identities = 23/108 (21%), Positives = 38/108 (35%), Gaps = 6/108 (5%)
Query: 236 LDQTDGSHKTPLMIAAQEGHVG----LLELLLDKGADILREDGEGLTALSWACMRGRIQA 291
+ D TPL IA +G++ L+ L G ++ + T L A +
Sbjct: 2 ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSV 61
Query: 292 VTYLLDRDRGAMIEHVDINGLRPLDRAISCRNVPVVQCFLRKGAKLGP 339
V L+ GA +D +G A R+ ++ L A
Sbjct: 62 VRLLVTA--GASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTL 107
Score = 57.5 bits (140), Expect = 7e-10
Identities = 21/82 (25%), Positives = 36/82 (43%), Gaps = 2/82 (2%)
Query: 106 NVKVSRLLLLSGADANHITEFLGAAPALCLFAHEGNSEMIALLLEFHACIDLANSQGRTP 165
++ + +LLL GA+ N G++ L + G ++ L+ A L N TP
Sbjct: 162 SLSMVQLLLQHGANVNAQMYS-GSSA-LHSASGRGLLPLVRTLVRSGADSSLKNCHNDTP 219
Query: 166 LSLAAGRGHMEAVRTLVAAGAS 187
L +A R ++ +R AS
Sbjct: 220 LMVARSRRVIDILRGKATRPAS 241
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats,
methyllyine binding, huntingti interacting protein 14,
acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo
sapiens}
Length = 240
Score = 138 bits (351), Expect = 2e-39
Identities = 59/236 (25%), Positives = 89/236 (37%), Gaps = 22/236 (9%)
Query: 106 NVKVSRLLLLSGADANHITEFLGAAPALCLFAHEGNSEMIALLLEFHACID-LANSQGRT 164
+ R L+ +G D + L A +++ + A +D L T
Sbjct: 21 IYERCRELVEAGYDVRQPDKE-NVTL-LHWAAINNRIDLVKYYISKGAIVDQLGGDLNST 78
Query: 165 PLSLAAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPLMLAVKEGHWA 224
PL A +GH+ V L+ GA D G S + LA + GH +
Sbjct: 79 PLHWATRQGHLSMVVQLMKYGADPSLIDGEGC---------------SCIHLAAQFGHTS 123
Query: 225 TAEKLLQHHAPLDQTDGSHKTPLMIAAQEGH-VGLLELLLDKGADI-LREDGEGLTALSW 282
L+ +D D + TPLM AA H V LLL + L + TAL W
Sbjct: 124 IVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHW 183
Query: 283 ACMRGRIQAVTYLLDRDRGAMIEHVDINGLRPLDRAISCRNVPVVQCFLRKGAKLG 338
A + G ++ LL+ GA ++ +I G LD A +NV ++ G
Sbjct: 184 AVLAGNTTVISLLLEA--GANVDAQNIKGESALDLAKQRKNVWMINHLQEARQAKG 237
Score = 132 bits (334), Expect = 8e-37
Identities = 48/202 (23%), Positives = 75/202 (37%), Gaps = 23/202 (11%)
Query: 155 IDLANSQGRTPLSLAAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHL------ 208
+ + + A G E R LV AG + + D L AA +
Sbjct: 2 MTHIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYY 61
Query: 209 -------------QNLSPLMLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGH 255
N +PL A ++GH + +L+++ A DG + + +AAQ GH
Sbjct: 62 ISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGH 121
Query: 256 VGLLELLLDKGADILREDGEGLTALSWACMRG-RIQAVTYLLDRDRGAMIEHVD-INGLR 313
++ L+ KG D+ D G+T L WA R + LL + D +
Sbjct: 122 TSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLL--TFNVSVNLGDKYHKNT 179
Query: 314 PLDRAISCRNVPVVQCFLRKGA 335
L A+ N V+ L GA
Sbjct: 180 ALHWAVLAGNTTVISLLLEAGA 201
Score = 62.5 bits (153), Expect = 2e-11
Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Query: 109 VSRLLLLSGADANHITEFLGAAPALCLFAHEGNSEMIALLLEFHACIDLANSQGRTPLSL 168
+RLLL N ++ L GN+ +I+LLLE A +D N +G + L L
Sbjct: 158 PTRLLLTFNVSVNLGDKYHKNTA-LHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDL 216
Query: 169 AAGRGHMEAVRTLVAAGASLGRTD 192
A R ++ + L A + G +
Sbjct: 217 AKQRKNVWMINHLQEARQAKGYDN 240
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase
(M130), serine/threonine protein phosphatase PP1-beta
(OR delta) catalytic subunit; myosin phosphatase; HET:
PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Length = 299
Score = 139 bits (354), Expect = 3e-39
Identities = 53/225 (23%), Positives = 92/225 (40%), Gaps = 16/225 (7%)
Query: 106 NVKVSRLLLLSGADANHITEFLGAAPALCLFAHEGNSEMIALLLEFHACIDLANSQGRTP 165
+ + LL GAD N+ G L + N +M+ L+E A I+ +++G P
Sbjct: 52 DTEEVLRLLERGADINYANVD-GLTA-LHQACIDDNVDMVKFLVENGANINQPDNEGWIP 109
Query: 166 LSLAAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNL------------SP 213
L AA G+++ L++ GA +G ++ G L A + L +
Sbjct: 110 LHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAA 169
Query: 214 LMLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILRED 273
+ + L H + S T L +AA +G+ +L+LL+ D+ +D
Sbjct: 170 RKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKD 229
Query: 274 GEGLTALSWACMRGRIQAVTYLLDRDRGAMIEHVDINGLRPLDRA 318
+G T L A G+ +A L+ + +E V+ G D A
Sbjct: 230 YDGWTPLHAAAHWGKEEACRILV--ENLCDMEAVNKVGQTAFDVA 272
Score = 114 bits (287), Expect = 2e-29
Identities = 35/192 (18%), Positives = 67/192 (34%), Gaps = 18/192 (9%)
Query: 155 IDLANSQGRTPLSLAAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPL 214
+ +A+++ + L G + V G + A G +
Sbjct: 1 MKMADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDG-AVFLAACSSGDTE----- 54
Query: 215 MLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILREDG 274
+LL+ A ++ + T L A + +V +++ L++ GA+I + D
Sbjct: 55 ----------EVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDN 104
Query: 275 EGLTALSWACMRGRIQAVTYLLDRDRGAMIEHVDINGLRPLDRAISCRNVPVVQCFLRKG 334
EG L A G + YL+ +GA + V+ G PLD A ++Q + +
Sbjct: 105 EGWIPLHAAASCGYLDIAEYLI--SQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQ 162
Query: 335 AKLGPTTWSMAA 346
Sbjct: 163 GVDIEAARKEEE 174
Score = 109 bits (276), Expect = 5e-28
Identities = 49/229 (21%), Positives = 79/229 (34%), Gaps = 28/229 (12%)
Query: 108 KVSRLLLLSGADANHITEFLGAAPALCLFAHEGNSEMIALLLEFHACIDLANSQGRTPLS 167
++ +F A L G++E + LLE A I+ AN G T L
Sbjct: 22 TDLEPPVVKRKKTK--VKFDDGAVFLA-ACSSGDTEEVLRLLERGADINYANVDGLTALH 78
Query: 168 LAAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPLMLAVKEGHWATAE 227
A +++ V+ LV GA++ + D G PL A G+ AE
Sbjct: 79 QACIDDNVDMVKFLVENGANINQPDNEGW---------------IPLHAAASCGYLDIAE 123
Query: 228 KLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDK-GADILREDGEGLTALSWACMR 286
L+ A + + TPL IA +E LL+ +++ G DI A
Sbjct: 124 YLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIE-------AARKEEERI 176
Query: 287 GRIQAVTYLLDRDRGAMIEHVDINGLRPLDRAISCRNVPVVQCFLRKGA 335
A +L +G L A + V++ ++
Sbjct: 177 MLRDARQWLNSG--HINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARY 223
Score = 103 bits (259), Expect = 2e-25
Identities = 42/212 (19%), Positives = 70/212 (33%), Gaps = 26/212 (12%)
Query: 106 NVKVSRLLLLSGADANHITEFLGAAPALCLFAHEGNSEMIALLLEFHACIDLANSQGRTP 165
NV + + L+ +GA+ N G P L A G ++ L+ A + NS+G TP
Sbjct: 85 NVDMVKFLVENGANINQPDNE-GWIP-LHAAASCGYLDIAEYLISQGAHVGAVNSEGDTP 142
Query: 166 LSLAAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHL----------------- 208
L +A E ++ V A R
Sbjct: 143 LDIAEEEAMEELLQNEVNRQGVDIEA------ARKEEERIMLRDARQWLNSGHINDVRHA 196
Query: 209 -QNLSPLMLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGA 267
+ L +A +G+ + L+Q ++ D TPL AA G +L++
Sbjct: 197 KSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLC 256
Query: 268 DILREDGEGLTALSWACMRGRIQAVTYLLDRD 299
D+ + G TA A ++
Sbjct: 257 DMEAVNKVGQTAFDVADEDILGYLEELQKKQN 288
Score = 88.7 bits (221), Expect = 3e-20
Identities = 28/182 (15%), Positives = 57/182 (31%), Gaps = 26/182 (14%)
Query: 106 NVKVSRLLLLSGADANHITEFLGAAPALCLFAHEGNSEMIALLLEFHACIDLANSQGRTP 165
+ ++ L+ GA + G P L + E E++ + +D
Sbjct: 118 YLDIAEYLISQGAHVGAVNSE-GDTP-LDIAEEEAMEELLQNEVNRQG-VD-----IEAA 169
Query: 166 LSLAAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQ---------------- 209
+A + L + + R +G AL AA G+ +
Sbjct: 170 RKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKD 229
Query: 210 --NLSPLMLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGA 267
+PL A G L+++ ++ + +T +A ++ L EL +
Sbjct: 230 YDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADEDILGYLEELQKKQNL 289
Query: 268 DI 269
Sbjct: 290 LH 291
Score = 70.6 bits (174), Expect = 6e-14
Identities = 32/126 (25%), Positives = 49/126 (38%), Gaps = 11/126 (8%)
Query: 236 LDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILREDGEGLTALSWACMRGRIQAVTYL 295
+ D K + G LE + K + +G L AC G + V L
Sbjct: 1 MKMADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFL-AACSSGDTEEVLRL 59
Query: 296 LDRDRGAMIEHVDINGLRPLDRAISCRNVPVVQCFLRKGA------KLGPTTWSMAA--G 347
L +RGA I + +++GL L +A NV +V+ + GA G AA G
Sbjct: 60 L--ERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCG 117
Query: 348 KPEVME 353
++ E
Sbjct: 118 YLDIAE 123
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A;
1.80A {Homo sapiens} SCOP: d.211.1.1
Length = 285
Score = 138 bits (350), Expect = 9e-39
Identities = 58/236 (24%), Positives = 95/236 (40%), Gaps = 13/236 (5%)
Query: 106 NVKVSRLLLLSGADANHITEFLGAAPALCLFAHEGNSEMIALLLEFHACIDLANSQGRTP 165
+ LLL GAD + GA P L A G+ +++ L L A ++ + G T
Sbjct: 51 REDIVELLLRHGADPVLRKKN-GATP-FLLAAIAGSVKLLKLFLSKGADVNECDFYGFTA 108
Query: 166 LSLAAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPLMLAVKEGHWAT 225
AA G ++A++ L GA++ T G + LM A ++GH
Sbjct: 109 FMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGG-----ATALMDAAEKGHVEV 163
Query: 226 AEKLLQHH-APLDQTDGSHKTPLMIAAQEGHVGLL----ELLLDKGADILREDGEGLTAL 280
+ LL A ++ D + L+ A + LLLD GAD+ G T L
Sbjct: 164 LKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPL 223
Query: 281 SWACMRGRIQAVTYLLDRDRGAMIEHVDINGLRPLDRAISCRNVPVVQCFLRKGAK 336
A + + V LL+++ I D +G L A+ + + + ++GA
Sbjct: 224 ILAVEKKHLGLVQRLLEQE-HIEINDTDSDGKTALLLAVELKLKKIAELLCKRGAS 278
Score = 126 bits (319), Expect = 4e-34
Identities = 63/246 (25%), Positives = 98/246 (39%), Gaps = 34/246 (13%)
Query: 106 NVKVSRLLLLSGADANHITEFLGAAPALCLFAHEGNSEMIALLLEFHACIDLANSQGRTP 165
+V + + LL GA+ N E G P L +++ LLL A L G TP
Sbjct: 17 DVDLVQQLLEGGANVNFQEEEGGWTP-LHNAVQMSREDIVELLLRHGADPVLRKKNGATP 75
Query: 166 LSLAAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPLMLAVKEGHWAT 225
LAA G ++ ++ ++ GA + D G + M A G
Sbjct: 76 FLLAAIAGSVKLLKLFLSKGADVNECDFYGF---------------TAFMEAAVYGKVKA 120
Query: 226 AEKLLQHHA----------PLDQTDGSHKTPLMIAAQEGHVGLLELLLDK-GADILREDG 274
+ L + A ++ T LM AA++GHV +L++LLD+ GAD+ D
Sbjct: 121 LKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDN 180
Query: 275 EGLTALSWACMRGRIQA----VTYLLDRDRGAMIEHVDINGLRPLDRAISCRNVPVVQCF 330
G AL A + LL D GA + G PL A+ +++ +VQ
Sbjct: 181 MGRNALIHALLSSDDSDVEAITHLLL--DHGADVNVRGERGKTPLILAVEKKHLGLVQRL 238
Query: 331 L-RKGA 335
L ++
Sbjct: 239 LEQEHI 244
Score = 116 bits (293), Expect = 2e-30
Identities = 57/216 (26%), Positives = 88/216 (40%), Gaps = 27/216 (12%)
Query: 106 NVKVSRLLLLSGADANHITEFLGAAPALCLFAHEGNSEMIALLLE----------FHACI 155
+VK+ +L L GAD N + G A G + + L +
Sbjct: 84 SVKLLKLFLSKGADVNECDFY-GFTA-FMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQ 141
Query: 156 DLANSQGRTPLSLAAGRGHMEAVRTLVA-AGASLGRTDTTGRCALVHAARGGHLQNLSPL 214
+ G T L AA +GH+E ++ L+ GA + D GR AL+HA
Sbjct: 142 ERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSD------- 194
Query: 215 MLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDK-GADILRED 273
A LL H A ++ KTPL++A ++ H+GL++ LL++ +I D
Sbjct: 195 ----DSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTD 250
Query: 274 GEGLTALSWACMRGRIQAVTYLLDRDRGAMIEHVDI 309
+G TAL A + L RGA + D+
Sbjct: 251 SDGKTALLLAVELKLKKIAELLC--KRGASTDCGDL 284
Score = 115 bits (291), Expect = 3e-30
Identities = 49/187 (26%), Positives = 76/187 (40%), Gaps = 23/187 (12%)
Query: 158 ANSQGRTPLSLAAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPLMLA 217
A + L A ++ V+ L+ GA++ + G +PL A
Sbjct: 1 AAVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGW--------------TPLHNA 46
Query: 218 VKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILREDGEGL 277
V+ E LL+H A + TP ++AA G V LL+L L KGAD+ D G
Sbjct: 47 VQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGF 106
Query: 278 TALSWACMRGRIQAVTYLLDR--------DRGAMIEHVDINGLRPLDRAISCRNVPVVQC 329
TA A + G+++A+ +L R E + G L A +V V++
Sbjct: 107 TAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKI 166
Query: 330 FLRK-GA 335
L + GA
Sbjct: 167 LLDEMGA 173
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural
genomics of pathogenic protozoa consortium, SGPP, ANK
repeat; 2.90A {Leishmania major}
Length = 364
Score = 140 bits (354), Expect = 1e-38
Identities = 44/249 (17%), Positives = 77/249 (30%), Gaps = 31/249 (12%)
Query: 106 NVKVSRLLLLSGADANHITEFLGAAPALCLFAHEGNSEMIALLLEFHACIDLANSQGRTP 165
R L+ +G F G L L G + L L + G+ P
Sbjct: 32 QTDEVRRLIETGVSPTIQNRF-GCTA-LHLACKFGCVDTAKYLASVGEVHSLWH--GQKP 87
Query: 166 LSLAAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQ------------NLSP 213
+ LA + V LV G+ + +
Sbjct: 88 IHLAVMANKTDLVVALVEGAKERGQM------PESLLNECDEREVNEIGSHVKHCKGQTA 141
Query: 214 LMLAVKEG--HWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLD-----KG 266
L V G + + L+Q A D + +TPLM A + + L+L++D
Sbjct: 142 LHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSS 201
Query: 267 ADILREDGEGLTALSWACMRGRIQAVTYLLDRDRGAMIEHVDINGLRPLDRAISCRNVPV 326
+ + +G + L WA + + + G + D PL ++ V +
Sbjct: 202 LRLDYANKQGNSHLHWAILINWEDVAMRFV--EMGIDVNMEDNEHTVPLYLSVRAAMVLL 259
Query: 327 VQCFLRKGA 335
+ L+K
Sbjct: 260 TKELLQKTD 268
Score = 133 bits (338), Expect = 3e-36
Identities = 37/270 (13%), Positives = 76/270 (28%), Gaps = 54/270 (20%)
Query: 106 NVKVSRLLLLSGADANHITEFLGAAPALCLFAHEGNSEMIALLLEFHACIDLANSQGRTP 165
+ L+ + + L E+ + + + +G+T
Sbjct: 96 KTDLVVALVEGAKERGQM--------PESLLNECDEREVNEIG------SHVKHCKGQTA 141
Query: 166 LSLAA--GRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQ-------------- 209
L G ++E ++ LV GAS D L+ A + +
Sbjct: 142 LHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSS 201
Query: 210 ---------NLSPLMLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLE 260
S L A+ A + ++ ++ D H PL ++ + V L +
Sbjct: 202 LRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTK 261
Query: 261 LLLDKGA-------------DILREDGEGLTALSWACMRGRIQAVTYLLDRDRGAMIEHV 307
LL K +L + L + A + + + L ++ +
Sbjct: 262 ELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEK--LDEVVRS 319
Query: 308 DINGLRPLDRAISCRNVPVVQCFLRKGAKL 337
G + V + L A +
Sbjct: 320 LNTGAGGAVKRKKKAAPAVKRMKLAPSAPV 349
Score = 129 bits (327), Expect = 1e-34
Identities = 37/216 (17%), Positives = 68/216 (31%), Gaps = 25/216 (11%)
Query: 137 AHEGNSEMIALLLEFHACIDLANSQGRTPLSLAAGRGHMEAVRTLVAAGASLGRTDTTGR 196
A +G ++ + L+E + N G T L LA G ++ + L + G G+
Sbjct: 28 ARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSLWH--GQ 85
Query: 197 CALVHAARGGHLQ------------NLSPLMLAVKEGHWATAEKLLQHHAPLDQTDGSHK 244
+ A P L + E +
Sbjct: 86 KPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNE------IGSHVKHCKGQ 139
Query: 245 TPLMIAAQEG--HVGLLELLLDKGADILREDGEGLTALSWACMRGRIQAVTYLLDRDR-- 300
T L G ++ ++++L+ GA +D T L A +A+ ++D
Sbjct: 140 TALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSK 199
Query: 301 -GAMIEHVDINGLRPLDRAISCRNVPVVQCFLRKGA 335
+++ + G L AI V F+ G
Sbjct: 200 SSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGI 235
Score = 128 bits (325), Expect = 2e-34
Identities = 36/231 (15%), Positives = 67/231 (29%), Gaps = 37/231 (16%)
Query: 106 NVKVSRLLLLSGADANHITEFLGAAPALCLFAHEGNSEMIALLLEFH-----ACIDLANS 160
+++ ++L+ GA + P L N E + L+++ +D AN
Sbjct: 152 YLEMIKILVQLGASPTAKDKA-DETP-LMRAMEFRNREALDLMMDTVPSKSSLRLDYANK 209
Query: 161 QGRTPLSLAAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPLMLAVKE 220
QG + L A + V G + D PL L+V+
Sbjct: 210 QGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHT---------------VPLYLSVRA 254
Query: 221 GHWATAEKLLQHHAPLDQTDGSHK-------------TPLMIAAQEGHVGLLELLLDKGA 267
++LLQ + + AA +L+LL +K
Sbjct: 255 AMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKLD 314
Query: 268 DILREDGEGLTALSWACMRGRIQAVTYLLDRDRGAMIEHVDINGLRPLDRA 318
+++R G + L A + + R +
Sbjct: 315 EVVRSLNTGAGGAVKRKKKAAPAVKRMKL--APSAPVRTRSRSRARSSAVS 363
Score = 107 bits (269), Expect = 1e-26
Identities = 38/208 (18%), Positives = 67/208 (32%), Gaps = 33/208 (15%)
Query: 148 LLEFHAC-IDLANSQGRTPLSLAAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGG 206
+ +F ++ + + +AA +G + VR L+ G S + G AL A + G
Sbjct: 5 MTDFPKLNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFG 64
Query: 207 HLQ----------------NLSPLMLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIA 250
+ P+ LAV L++ Q P +
Sbjct: 65 CVDTAKYLASVGEVHSLWHGQKPIHLAVMANKTDLVVALVEGAKERGQM------PESLL 118
Query: 251 AQEGHVGLLELLLDKGADILREDGEGLTALSWACMRG--RIQAVTYLLDRDRGAMIEHVD 308
+ + E+ + +G TAL W G ++ + L+ GA D
Sbjct: 119 NECDEREVNEIGSHV------KHCKGQTALHWCVGLGPEYLEMIKILV--QLGASPTAKD 170
Query: 309 INGLRPLDRAISCRNVPVVQCFLRKGAK 336
PL RA+ RN + +
Sbjct: 171 KADETPLMRAMEFRNREALDLMMDTVPS 198
Score = 84.5 bits (210), Expect = 2e-18
Identities = 25/119 (21%), Positives = 48/119 (40%), Gaps = 6/119 (5%)
Query: 237 DQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILREDGEGLTALSWACMRGRIQAVTYLL 296
++D + + +AA++G + L++ G ++ G TAL AC G + YL
Sbjct: 14 IKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLA 73
Query: 297 DRDRGAMIEHVDINGLRPLDRAISCRNVPVVQCFLRKGAKLGPTTWSMAA--GKPEVME 353
G + +G +P+ A+ +V + + G S+ + EV E
Sbjct: 74 --SVGEVHS--LWHGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNE 128
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell
cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A
2f8x_K 3nbn_B 3v79_K* 1ot8_A
Length = 253
Score = 135 bits (343), Expect = 6e-38
Identities = 50/228 (21%), Positives = 77/228 (33%), Gaps = 22/228 (9%)
Query: 128 GAAPALCLFAHEGNSEMIALLLEFHACI-DLANSQGRTPLSLAAGRGHMEAVRTLVAAGA 186
G E +I+ + A + + + G T L LAA +A + L+ A A
Sbjct: 22 GGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASA 81
Query: 187 SLGRTDTTGRCALVHAARGGHLQ-------------------NLSPLMLAVKEGHWATAE 227
D GR L A +PL+LA + E
Sbjct: 82 DANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLE 141
Query: 228 KLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILREDGEGLTALSWACMRG 287
L+ HA ++ D K+ L AA +V +LL GA+ ++ T L A G
Sbjct: 142 DLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREG 201
Query: 288 RIQAVTYLLDRDRGAMIEHVDINGLRPLDRAISCRNVPVVQCFLRKGA 335
+ LL D A + D P D A + +V+ +
Sbjct: 202 SYETAKVLL--DHFANRDITDHMDRLPRDIAQERMHHDIVRLLDLEHH 247
Score = 102 bits (258), Expect = 9e-26
Identities = 45/196 (22%), Positives = 72/196 (36%), Gaps = 47/196 (23%)
Query: 106 NVKVSRLLLLSGADAN----------H---------ITEFL---GAAP----------AL 133
++ LL + ADAN H + + L A L
Sbjct: 69 RSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPL 128
Query: 134 CLFAHEGNSEMIALLLEFHACIDLANSQGRTPLSLAAGRGHMEAVRTLVAAGASLGRTDT 193
L A M+ L+ HA ++ + G++ L AA +++A L+ GA+ +
Sbjct: 129 ILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNN 188
Query: 194 TGRCALVHAARGGHLQNLSPLMLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQE 253
+PL LA +EG + TA+ LL H A D TD + P IA +
Sbjct: 189 REE---------------TPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQER 233
Query: 254 GHVGLLELLLDKGADI 269
H ++ LL +
Sbjct: 234 MHHDIVRLLDLEHHHH 249
Score = 99.5 bits (249), Expect = 1e-24
Identities = 46/196 (23%), Positives = 73/196 (37%), Gaps = 32/196 (16%)
Query: 155 IDLANSQGRTPLSLAAGRG-------------HMEAVRTLVAAGASLG-RTDTTGRCALV 200
+++ G TPL +A+ G + + GASL +TD TG
Sbjct: 3 VNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGE---- 58
Query: 201 HAARGGHLQNLSPLMLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLE 260
+ L LA + A++LL+ A + D +TPL A G+ +
Sbjct: 59 -----------TALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQ 107
Query: 261 LLLDKGA-DILREDGEGLTALSWACMRGRIQAVTYLLDRDRGAMIEHVDINGLRPLDRAI 319
+L+ A D+ +G T L A + L+ + A + VD G L A
Sbjct: 108 ILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLI--NSHADVNAVDDLGKSALHWAA 165
Query: 320 SCRNVPVVQCFLRKGA 335
+ NV L+ GA
Sbjct: 166 AVNNVDAAVVLLKNGA 181
Score = 68.3 bits (168), Expect = 2e-13
Identities = 30/107 (28%), Positives = 40/107 (37%), Gaps = 16/107 (14%)
Query: 244 KTPLMIAAQEG-------------HVGLLELLLDKGADILRE-DGEGLTALSWACMRGRI 289
TPLMIA+ G ++ + +GA + + D G TAL A R
Sbjct: 11 FTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRS 70
Query: 290 QAVTYLLDRDRGAMIEHVDINGLRPLDRAISCRNVPVVQCFLRKGAK 336
A LL + A D G PL A+S V Q +R A
Sbjct: 71 DAAKRLL--EASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRAT 115
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC,
rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens}
PDB: 3uxg_A
Length = 172
Score = 129 bits (326), Expect = 1e-36
Identities = 41/177 (23%), Positives = 70/177 (39%), Gaps = 18/177 (10%)
Query: 162 GRTPLSLAAGRGHMEAVRTLVAAGASL-GRTDTTGRCALVHAARGGHLQNLSPLMLAVKE 220
+ A +G ++ ++ + G +L + D G +PL+ A
Sbjct: 2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGF---------------TPLIWASAF 46
Query: 221 GHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILREDGEGLTAL 280
G T LL+ A ++ L +A+ G+ ++ LLL++ DI D G T L
Sbjct: 47 GEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPL 106
Query: 281 SWACMRGRIQAVTYLLDRDRGAMIEHVDINGLRPLDRAISCRNVPVVQCFLRKGAKL 337
+A ++ V LL RGA + +G P+D A++ V Q KL
Sbjct: 107 LYAVRGNHVKCVEALL--ARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHILKL 161
Score = 114 bits (289), Expect = 4e-31
Identities = 35/173 (20%), Positives = 65/173 (37%), Gaps = 16/173 (9%)
Query: 106 NVKVSRLLLLSGADANHITEFLGAAPALCLFAHEGNSEMIALLLEFHACIDLANSQGRTP 165
+ + L G + + + G P L + G E + LLE+ A + + +
Sbjct: 14 ELDQLKEHLRKGDNLVNKPDERGFTP-LIWASAFGEIETVRFLLEWGADPHILAKERESA 72
Query: 166 LSLAAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPLMLAVKEGHWAT 225
LSLA+ G+ + V L+ + D G +PL+ AV+ H
Sbjct: 73 LSLASTGGYTDIVGLLLERDVDINIYDWNGG---------------TPLLYAVRGNHVKC 117
Query: 226 AEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILREDGEGLT 278
E LL A L S TP+ +A G+ + +++ + + + +
Sbjct: 118 VEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHILKLFQSNLVPAD 170
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Length = 285
Score = 131 bits (331), Expect = 6e-36
Identities = 39/258 (15%), Positives = 73/258 (28%), Gaps = 41/258 (15%)
Query: 106 NVKVSRLLLLSGADAN---HITEFLGAAPALCLFAHEGNSEMIALLLEFHACIDLANSQG 162
NV++ LL +GA N + L A +++++ +LL + +G
Sbjct: 43 NVRLVCTLLNAGALKNLLENEF-------PLHQAATLEDTKIVKILLFSGLDDSQFDDKG 95
Query: 163 RTPLSLAAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPLMLAVKEGH 222
T L A G+M+ V+ V L TG + AV
Sbjct: 96 NTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWK--------------TSFYHAVMLND 141
Query: 223 WATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILREDGEGLT-ALS 281
+ L + + I + GHV ++ LLLD + +
Sbjct: 142 VSIVSYFLSEIPS-TFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIK 200
Query: 282 WACMRGRIQAVTYLLDRDRGAMIEHVDINGLRPLDRAISCRNVPVVQCFLRKGA------ 335
A I+ + L +I + + + + + K
Sbjct: 201 LAIDNKDIEMLQALF--KYDI-----NIY--SANLENVLLDDAEIAKMIIEKHVEYKSDS 251
Query: 336 KLGPTTWSMAAGKPEVME 353
E++
Sbjct: 252 YTKDLDIVKNNKLDEIIS 269
Score = 129 bits (326), Expect = 3e-35
Identities = 38/225 (16%), Positives = 71/225 (31%), Gaps = 24/225 (10%)
Query: 113 LLLSGADANHITEFLGAAPALCLFAHEGNSEMIALLLEFHACIDLANSQGRTPLSLAAGR 172
LS D G + + N ++ LL A +L PL AA
Sbjct: 17 SFLSSKDTFKADVH-GHSA-SYYAIADNNVRLVCTLLNAGALKNLLE--NEFPLHQAATL 72
Query: 173 GHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPLMLAVKEGHWATAEKLLQH 232
+ V+ L+ +G + D G + L AV G+ T + ++
Sbjct: 73 EDTKIVKILLFSGLDDSQFDDKGN---------------TALYYAVDSGNMQTVKLFVKK 117
Query: 233 HAPLDQTDGS-HKTPLMIAAQEGHVGLLELLLDKGADILREDGEGLTALSWACMRGRIQA 291
+ L + KT A V ++ L + + L+ + G +
Sbjct: 118 NWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTF-DLAILLSCIHITIKNGHVDM 176
Query: 292 VTYLLDRDRGAMIEHVDINGLRP-LDRAISCRNVPVVQCFLRKGA 335
+ LL D + P + AI +++ ++Q +
Sbjct: 177 MILLL--DYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDI 219
Score = 128 bits (324), Expect = 6e-35
Identities = 39/229 (17%), Positives = 66/229 (28%), Gaps = 31/229 (13%)
Query: 135 LFAHEGNSEMIALLLEFHACIDLANSQGRTPLSLAAGRGHMEAVRTLVAAGASLGRTDTT 194
+ S+ + L A+ G + A ++ V TL+ AGA +
Sbjct: 5 SRINTWKSKQLKSFLSSKD-TFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLLE-- 61
Query: 195 GRCALVHAARGGHLQNLSPLMLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEG 254
N PL A + LL Q D T L A G
Sbjct: 62 ---------------NEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSG 106
Query: 255 HVGLLELLLDKGADILREDGEGL-TALSWACMRGRIQAVTYLLDRDRGAMIEHVDINGLR 313
++ ++L + K ++ G T+ A M + V+Y L L
Sbjct: 107 NMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFL--SEIPSTFD-LAILLS 163
Query: 314 PLDRAISCRNVPVVQCFLRKGA------KLGPTTWSMAA---GKPEVME 353
+ I +V ++ L L A E+++
Sbjct: 164 CIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQ 212
Score = 101 bits (254), Expect = 6e-25
Identities = 31/175 (17%), Positives = 62/175 (35%), Gaps = 23/175 (13%)
Query: 162 GRTPLSLAAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPLMLAVKEG 221
G + + +++ ++ + D G A +A +++
Sbjct: 1 GMDLSRINTW--KSKQLKSFLS-SKDTFKADVHGHSASYYAIADNNVR------------ 45
Query: 222 HWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILREDGEGLTALS 281
LL A + + + PL AA ++++LL G D + D +G TAL
Sbjct: 46 ---LVCTLLNAGALKNLLEN--EFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALY 100
Query: 282 WACMRGRIQAVTYLLDRDRGAMIEHVDINGLR-PLDRAISCRNVPVVQCFLRKGA 335
+A G +Q V + + + G + A+ +V +V FL +
Sbjct: 101 YAVDSGNMQTVKLFV--KKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIP 153
Score = 86.4 bits (215), Expect = 1e-19
Identities = 15/177 (8%), Positives = 52/177 (29%), Gaps = 22/177 (12%)
Query: 106 NVKVSRLLLLSGADANHITEFLGAAPALCLFAHEGNSEMIALLLEFHACIDLANSQGRTP 165
N++ +L + + G + + +++ L + +
Sbjct: 107 NMQTVKLFVKKNWRLMFYGKT-GWKTSFYHAVMLNDVSIVSYFLS-EIPSTFDLAILLSC 164
Query: 166 LSLAAGRGHMEAVRTLVAAGASLGRTDTTGRCALVH-AARGGHLQ------------NLS 212
+ + GH++ + L+ S ++ + A ++ S
Sbjct: 165 IHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIY-S 223
Query: 213 PLMLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADI 269
+ V A+ +++ H + ++ + L+ ++ K ++
Sbjct: 224 ANLENVLLDDAEIAKMIIEKHVEYKSDSYTKDLDIVKNNK------LDEIISKNKEL 274
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein
complex, transcription factors, nuclear localization,
DNA binding protein; 2.05A {Mus musculus} SCOP:
d.211.1.1 PDB: 1k3z_D
Length = 282
Score = 131 bits (331), Expect = 6e-36
Identities = 46/233 (19%), Positives = 71/233 (30%), Gaps = 7/233 (3%)
Query: 106 NVKVSRLLLLSGADANHITE--FLGAAPALCLFAHEGNSEMIALLLEFHACIDLANSQGR 163
+ LL A ++ LG L L A G + + L A + +A G
Sbjct: 21 HEPFLDFLLGFSAGHEYLDLQNDLGQTA-LHLAAILGEASTVEKLYAAGAGVLVAERGGH 79
Query: 164 TPLSLAAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPLMLAVKEGHW 223
T L LA L+ S R + + + +
Sbjct: 80 TALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQ-SQDCTPDTSHAPAAVDSQPNPEN 138
Query: 224 ATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILREDGE-GLTALSW 282
+ L+ + TPL +A ++ LL D GAD+ + + G T L
Sbjct: 139 EEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHL 198
Query: 283 ACMRGRIQAVTYLLDRDRGAMIEHVDINGLRPLDRAISCRNVPVVQCFLRKGA 335
A + LL GA G PL A+ N + + GA
Sbjct: 199 AVEAQAASVLELLL--KAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGA 249
Score = 123 bits (311), Expect = 4e-33
Identities = 44/206 (21%), Positives = 65/206 (31%), Gaps = 26/206 (12%)
Query: 106 NVKVSRLLLLSGADAN------------HITEFLGAAPALCLFAHEGNSEMIALLLEFHA 153
+ +LL T APA +E ++
Sbjct: 90 AHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRL 149
Query: 154 CIDLANSQGRTPLSLAAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSP 213
++ N G TPL +A E VR L AGA L + + T +P
Sbjct: 150 QLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGR--------------TP 195
Query: 214 LMLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILRED 273
L LAV+ + E LL+ A +TPL A + L LL GA +
Sbjct: 196 LHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDG 255
Query: 274 GEGLTALSWACMRGRIQAVTYLLDRD 299
G+ L+ S + + D
Sbjct: 256 GDKLSPCSSSGSDSDSDNRDEGDEYD 281
Score = 110 bits (278), Expect = 2e-28
Identities = 51/217 (23%), Positives = 74/217 (34%), Gaps = 35/217 (16%)
Query: 137 AHEGNSEMIALLLEFHA---CIDLANSQGRTPLSLAAGRGHMEAVRTLVAAGASLGRTDT 193
+ + LL F A +DL N G+T L LAA G V L AAGA + +
Sbjct: 17 VIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAER 76
Query: 194 TGRCALVHAARGGHLQNLSPLMLAVKEGHWATAEKLLQHHA-------------PLDQTD 240
G + L LA + A LLQ D T
Sbjct: 77 GGH---------------TALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTP 121
Query: 241 GSHKTPLMIAAQEGHVGLL-ELLLDKGADILREDGEGLTALSWACMRGRIQAVTYLLDRD 299
+ P + +Q D + E+ +G T L A + + V L D
Sbjct: 122 DTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLR--D 179
Query: 300 RGAMIEHVDIN-GLRPLDRAISCRNVPVVQCFLRKGA 335
GA + + G PL A+ + V++ L+ GA
Sbjct: 180 AGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGA 216
Score = 104 bits (261), Expect = 5e-26
Identities = 34/188 (18%), Positives = 55/188 (29%), Gaps = 28/188 (14%)
Query: 162 GRTPLSLAAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPLMLAVKEG 221
G T L LA H + L+ A D + L LA G
Sbjct: 9 GDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQND------------LGQTALHLAAILG 56
Query: 222 HWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILREDGEGLT--- 278
+T EKL A + + T L +A + +LL R+ +
Sbjct: 57 EASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQS 116
Query: 279 -----------ALSWACMRGRIQAVTYLLDRDRGAMIEHVDINGLRPLDRAISCRNVPVV 327
A + + D +E + +G PL A+ ++ +V
Sbjct: 117 QDCTPDTSHAPAAVDSQPNPENEEEPRDE--DWRLQLEAENYDGHTPLHVAVIHKDAEMV 174
Query: 328 QCFLRKGA 335
+ GA
Sbjct: 175 RLLRDAGA 182
Score = 72.6 bits (179), Expect = 8e-15
Identities = 23/103 (22%), Positives = 31/103 (30%), Gaps = 5/103 (4%)
Query: 236 LDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILR---EDGEGLTALSWACMRGRIQAV 292
T L +A H L+ LL A ++ G TAL A + G V
Sbjct: 2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTV 61
Query: 293 TYLLDRDRGAMIEHVDINGLRPLDRAISCRNVPVVQCFLRKGA 335
L GA + + G L A R L+
Sbjct: 62 EKLY--AAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRP 102
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit);
transcription factor, IKB/NFKB complex; 2.30A {Homo
sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Length = 236
Score = 129 bits (327), Expect = 6e-36
Identities = 52/206 (25%), Positives = 81/206 (39%), Gaps = 24/206 (11%)
Query: 138 HEGNSEMIALLLEFHACIDLANSQGRTPLSLAAGRGHMEAVRTLVAAGASLGRTDTTGRC 197
E+I + A ++ N+ +TPL LA E L+ AG D G
Sbjct: 21 KALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGN- 79
Query: 198 ALVHAARGGHLQNLSPLMLAVKEGHWATAEKLLQH------HAPLDQTDGSHKTPLMIAA 251
+PL LA ++G A+ L Q H+ L T+ + T L +A+
Sbjct: 80 --------------TPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLAS 125
Query: 252 QEGHVGLLELLLDKGADI-LREDGEGLTALSWACMRGRIQAVTYLLDRDRGAMIEHVDIN 310
G++G++ELL+ GAD+ +E G TAL A V+ LL GA + V
Sbjct: 126 IHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLL--KCGADVNRVTYQ 183
Query: 311 GLRPLDRAISCRNVPVVQCFLRKGAK 336
G P + + Q + +
Sbjct: 184 GYSPYQLTWGRPSTRIQQQLGQLTLE 209
Score = 108 bits (271), Expect = 8e-28
Identities = 38/187 (20%), Positives = 69/187 (36%), Gaps = 24/187 (12%)
Query: 106 NVKVSRLLLLSGADANHITEFLGAAPALCLFAHEGNSEMIALLLE------FHACIDLAN 159
+++ LL +G D + +F G P L L +G + +L + H+ + N
Sbjct: 57 QPEIAEALLGAGCDPE-LRDFRGNTP-LHLACEQGCLASVGVLTQSCTTPHLHSILKATN 114
Query: 160 SQGRTPLSLAAGRGHMEAVRTLVAAGASL-GRTDTTGRCALVHAARGGHLQNLSPLMLAV 218
G T L LA+ G++ V LV+ GA + + GR + L LAV
Sbjct: 115 YNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGR---------------TALHLAV 159
Query: 219 KEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILREDGEGLT 278
+ LL+ A +++ +P + + + L + L+ E
Sbjct: 160 DLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESED 219
Query: 279 ALSWACM 285
S+
Sbjct: 220 EESYDTE 226
Score = 100 bits (252), Expect = 3e-25
Identities = 43/185 (23%), Positives = 66/185 (35%), Gaps = 28/185 (15%)
Query: 162 GRTPLSLAAGRGH----MEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPLMLA 217
G + L LA ME +R + A L + + +PL LA
Sbjct: 8 GDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQ---------------TPLHLA 52
Query: 218 VKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILRE----- 272
V AE LL + D TPL +A ++G + + +L
Sbjct: 53 VITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKA 112
Query: 273 -DGEGLTALSWACMRGRIQAVTYLLDRDRGAMIEHVD-INGLRPLDRAISCRNVPVVQCF 330
+ G T L A + G + V L+ GA + + NG L A+ +N +V
Sbjct: 113 TNYNGHTCLHLASIHGYLGIVELLV--SLGADVNAQEPCNGRTALHLAVDLQNPDLVSLL 170
Query: 331 LRKGA 335
L+ GA
Sbjct: 171 LKCGA 175
Score = 69.1 bits (170), Expect = 8e-14
Identities = 21/103 (20%), Positives = 35/103 (33%), Gaps = 1/103 (0%)
Query: 106 NVKVSRLLLLSGADANHITEFLGAAPALCLFAHEGNSEMIALLLEFHACIDLANSQGRTP 165
+ + LL+ GAD N G L L N ++++LLL+ A ++ QG +P
Sbjct: 129 YLGIVELLVSLGADVNAQEPCNGRTA-LHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSP 187
Query: 166 LSLAAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHL 208
L GR + L + +
Sbjct: 188 YQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTESEFT 230
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin
repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A
1ymp_A
Length = 223
Score = 125 bits (318), Expect = 9e-35
Identities = 54/228 (23%), Positives = 83/228 (36%), Gaps = 19/228 (8%)
Query: 109 VSRLLLLSGADANHITEFLGAAPALCLFAHEGNSEMIALLLEFHACIDLANSQGRTPLSL 168
V + GA ++ T+ G L L A S+ LLE A ++ ++ GRTPL
Sbjct: 6 VISDFIYQGASLHNQTDRTGETA-LHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHA 64
Query: 169 AAGRGHMEAVRTLVAAGAS-LGRTDTTGRCALVHAARGGHLQNLSPLMLAVKEGHWATAE 227
A + L+ A+ L G +PL+LA + E
Sbjct: 65 AVSADAQGVFQILIRNRATDLDARMHDGT---------------TPLILAARLAVEGMLE 109
Query: 228 KLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILREDGEGLTALSWACMRG 287
L+ HA ++ D K+ L AA +V +LL GA+ ++ T L A G
Sbjct: 110 DLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREG 169
Query: 288 RIQAVTYLLDRDRGAMIEHVDINGLRPLDRAISCRNVPVVQCFLRKGA 335
+ LL D A + D P D A + +V+
Sbjct: 170 SYETAKVLL--DHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNL 215
Score = 117 bits (297), Expect = 1e-31
Identities = 47/201 (23%), Positives = 71/201 (35%), Gaps = 20/201 (9%)
Query: 106 NVKVSRLLLLSGADANHITEFLGAAPALCLFAHEGNSEMIALLLEFHAC-IDLANSQGRT 164
++ LL + ADAN G P L + +L+ A +D G T
Sbjct: 37 RSDAAKRLLEASADANIQDNM-GRTP-LHAAVSADAQGVFQILIRNRATDLDARMHDGTT 94
Query: 165 PLSLAAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPLMLAVKEGHWA 224
PL LAA + L+ + A + D G+ S L A +
Sbjct: 95 PLILAARLAVEGMLEDLINSHADVNAVDDLGK---------------SALHWAAAVNNVD 139
Query: 225 TAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILREDGEGLTALSWAC 284
A LL++ A D + +TPL +AA+EG ++LLD A+ D A
Sbjct: 140 AAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQ 199
Query: 285 MRGRIQAVTYLLDRDRGAMIE 305
R V L + +
Sbjct: 200 ERMHHDIVRLLD--EYNLVRS 218
Score = 90.5 bits (226), Expect = 2e-21
Identities = 40/165 (24%), Positives = 62/165 (37%), Gaps = 19/165 (11%)
Query: 173 GHMEAVRTLVAAGASLG-RTDTTGRCALVHAARGGHLQNLSPLMLAVKEGHWATAEKLLQ 231
+ + GASL +TD TG + L LA + A++LL+
Sbjct: 2 DAPAVISDFIYQGASLHNQTDRTGE---------------TALHLAARYSRSDAAKRLLE 46
Query: 232 HHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGA-DILREDGEGLTALSWACMRGRIQ 290
A + D +TPL A G+ ++L+ A D+ +G T L A
Sbjct: 47 ASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEG 106
Query: 291 AVTYLLDRDRGAMIEHVDINGLRPLDRAISCRNVPVVQCFLRKGA 335
+ L+ + A + VD G L A + NV L+ GA
Sbjct: 107 MLEDLI--NSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGA 149
Score = 60.9 bits (149), Expect = 5e-11
Identities = 23/84 (27%), Positives = 32/84 (38%), Gaps = 3/84 (3%)
Query: 254 GHVGLLELLLDKGADILRE-DGEGLTALSWACMRGRIQAVTYLLDRDRGAMIEHVDINGL 312
++ + +GA + + D G TAL A R A LL+ A D G
Sbjct: 2 DAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEA--SADANIQDNMGR 59
Query: 313 RPLDRAISCRNVPVVQCFLRKGAK 336
PL A+S V Q +R A
Sbjct: 60 TPLHAAVSADAQGVFQILIRNRAT 83
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix,
SH3, ankyrin repeat, signaling protein, ANK repeat,
cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB:
3ehq_A
Length = 222
Score = 123 bits (312), Expect = 7e-34
Identities = 38/214 (17%), Positives = 64/214 (29%), Gaps = 25/214 (11%)
Query: 106 NVKVSRLLLLSGADANHITEFLGAAPALCLFAHEGNSEMIALLLEFHACIDLANSQGRTP 165
+ L + D +IT+ + +G L + P
Sbjct: 24 EPRTPDELYIEEGDIIYITD-MSDTN-WWKGTSKGR-----TGLIPSNYVAEQAESIDNP 76
Query: 166 LSLAAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPLMLAVKEGHWAT 225
L AA RG++ +R + + D G + L A GH
Sbjct: 77 LHEAAKRGNLSWLRECLDNRVGVNGLDKAGS---------------TALYWACHGGHKDI 121
Query: 226 AEKLLQHH-APLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILREDGEGLTALSWAC 284
E L L+Q + T L AA +G+ +++LLL KGA + E A A
Sbjct: 122 VEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMAT 181
Query: 285 MRGRIQAVTYLLDRDRGAMIEHVDINGLRPLDRA 318
+ A+ + + +
Sbjct: 182 NAACASLLKKKQ--GTDAVRTLSNAEDYLDDEDS 213
Score = 118 bits (298), Expect = 6e-32
Identities = 33/205 (16%), Positives = 64/205 (31%), Gaps = 23/205 (11%)
Query: 132 ALCLFAHEGNSEMIALLLEFHACIDLANSQGRTPLSLAAGRGHMEAVRTLVAAGASLGRT 191
+ + L I T +G + +
Sbjct: 15 KVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLIP-----SNYVAEQ 69
Query: 192 DTTGRCALVHAARGGHLQNLSPLMLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAA 251
+ +PL A K G+ + + L + ++ D + T L A
Sbjct: 70 AESID---------------NPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWAC 114
Query: 252 QEGHVGLLELLLDK-GADILREDGEGLTALSWACMRGRIQAVTYLLDRDRGAMIEHVDIN 310
GH ++E+L + ++ +++ G TAL A +G V LL +GA + +I
Sbjct: 115 HGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLL--AKGARTDLRNIE 172
Query: 311 GLRPLDRAISCRNVPVVQCFLRKGA 335
D A + +++ A
Sbjct: 173 KKLAFDMATNAACASLLKKKQGTDA 197
Score = 105 bits (264), Expect = 5e-27
Identities = 34/178 (19%), Positives = 47/178 (26%), Gaps = 21/178 (11%)
Query: 158 ANSQGRTPLSLAAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPLMLA 217
G+ + A L + G
Sbjct: 8 PVKPGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRT--------- 58
Query: 218 VKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILREDGEGL 277
L + + S PL AA+ G++ L LD + D G
Sbjct: 59 -----------GLIPSNYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGS 107
Query: 278 TALSWACMRGRIQAVTYLLDRDRGAMIEHVDINGLRPLDRAISCRNVPVVQCFLRKGA 335
TAL WAC G V L + + + G L A +VQ L KGA
Sbjct: 108 TALYWACHGGHKDIVEMLFTQ-PNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGA 164
Score = 81.5 bits (202), Expect = 2e-18
Identities = 26/152 (17%), Positives = 51/152 (33%), Gaps = 18/152 (11%)
Query: 106 NVKVSRLLLLSGADANHITEFLGAAPALCLFAHEGNSEMIALLLEFH-ACIDLANSQGRT 164
N+ R L + N + + G+ L H G+ +++ +L ++ N G T
Sbjct: 85 NLSWLRECLDNRVGVNGLDKA-GSTA-LYWACHGGHKDIVEMLFTQPNIELNQQNKLGDT 142
Query: 165 PLSLAAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPLMLAVKEGHWA 224
L AA +G+ + V+ L+A GA + + +A +
Sbjct: 143 ALHAAAWKGYADIVQLLLAKGARTDLRNIEKK---------------LAFDMATNAACAS 187
Query: 225 TAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHV 256
+K A ++ + E H
Sbjct: 188 LLKKKQGTDAVRTLSNAEDYLDDEDSDLEHHH 219
Score = 67.3 bits (165), Expect = 3e-13
Identities = 13/102 (12%), Positives = 26/102 (25%), Gaps = 7/102 (6%)
Query: 234 APLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILREDGEGLTALSWACMRGRIQAVT 293
P + + + A + L + DI+ T +GR +
Sbjct: 3 KPPPKPVKPGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLI- 61
Query: 294 YLLDRDRGAMIEHVDINGLRPLDRAISCRNVPVVQCFLRKGA 335
+ + PL A N+ ++ L
Sbjct: 62 ------PSNYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRV 97
Score = 57.6 bits (140), Expect = 5e-10
Identities = 17/102 (16%), Positives = 33/102 (32%), Gaps = 2/102 (1%)
Query: 109 VSRLLLLSGADANHITEFLGAAPALCLFAHEGNSEMIALLLEFHACIDLANSQGRTPLSL 168
V L + N + G L A +G ++++ LLL A DL N + + +
Sbjct: 122 VEMLFTQPNIELNQQNKL-GDTA-LHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDM 179
Query: 169 AAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQN 210
A ++ A ++ + H +
Sbjct: 180 ATNAACASLLKKKQGTDAVRTLSNAEDYLDDEDSDLEHHHHH 221
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix,
ankyrin repeat, gene regulation/signalling protein/DNA
complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Length = 373
Score = 127 bits (321), Expect = 8e-34
Identities = 54/272 (19%), Positives = 97/272 (35%), Gaps = 46/272 (16%)
Query: 106 NVKVSRLLLLSGADANHITEFLGAAPALCLFAHEGNSEMIALLLEFH--------ACIDL 157
+ ++ + + L A ++E L+ A ++
Sbjct: 105 SYAITEPITRESVNIIDPRH--NRTV-LHWIASNSSAEKSEDLIVHEAKECIAAGADVNA 161
Query: 158 ANSQGRTPLSLAAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQ-------- 209
+ TPL LA V L+ AGA + + R AL AA
Sbjct: 162 MDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNS 221
Query: 210 -------------NLSPLMLAVKEGH---WATAEKLLQHHA--------PLDQTDGSHKT 245
++ LM+ A+A+ L++ A D +T
Sbjct: 222 TKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRT 281
Query: 246 PLMIAAQEGHVGLLELLL-DKGADILREDGEGLTALSWACMRGRIQAVTYLLDRDRGAMI 304
L AAQ ++ +++ L+ +KG++ ++D +G T + A GRI+ V YL+ + GA +
Sbjct: 282 ALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQ--GASV 339
Query: 305 EHVDINGLRPLDRAISCRNVPVVQCFLRKGAK 336
E VD A + + +V F R +
Sbjct: 340 EAVDATDHTARQLAQANNHHNIVDIFDRCRPE 371
Score = 116 bits (293), Expect = 7e-30
Identities = 39/211 (18%), Positives = 59/211 (27%), Gaps = 30/211 (14%)
Query: 155 IDLANSQGRTPLSLAAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQ----- 209
+ P G G+ + L H G
Sbjct: 54 RNELQHYSLYPNPQGYGNGNDFLGDFNHTNLQIPTEPEPESPIKL-HTEAAGSYAITEPI 112
Query: 210 ------------NLSPLMLAVKEGHWATAEKLLQHH--------APLDQTDGSHKTPLMI 249
N + L +E L+ H A ++ D TPLM+
Sbjct: 113 TRESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLML 172
Query: 250 AAQEGHVGLLELLLDKGADILREDGEGLTALSWACMRGRIQAVTYLLD-RDRGAMIEHVD 308
A L+ L+ GAD + +AL A + Y+L+ IE +D
Sbjct: 173 AVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELD 232
Query: 309 INGLRPLDRAISCRN---VPVVQCFLRKGAK 336
NG+ L V + + KGAK
Sbjct: 233 RNGMTALMIVAHNEGRDQVASAKLLVEKGAK 263
Score = 112 bits (283), Expect = 2e-28
Identities = 43/231 (18%), Positives = 75/231 (32%), Gaps = 37/231 (16%)
Query: 108 KVSRLLLLSGADANHITEFLGAAPALCLFAHEGNSEMIALLLEFHACIDLANSQGRTPLS 167
++ + +GAD N + P L L ++A L++ A + N R+ L
Sbjct: 147 HEAKECIAAGADVNAMDCD-ENTP-LMLAVLARRRRLVAYLMKAGADPTIYNKSERSALH 204
Query: 168 LAAGRGHMEAVRTLV---AAGASLGRTDTTGRCALVHAARGGHLQNLS------------ 212
AA + ++ + D G AL+ A ++
Sbjct: 205 QAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKV 264
Query: 213 -----------------PLMLAVKEGHWATAEKLLQHH-APLDQTDGSHKTPLMIAAQEG 254
L A + + + L+ + D+ D KTP+M+AAQEG
Sbjct: 265 DYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEG 324
Query: 255 HVGLLELLLDKGADILREDGEGLTALSWACMRGRIQAVTYLLDRDRGAMIE 305
+ ++ L+ +GA + D TA A V E
Sbjct: 325 RIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFD--RCRPERE 373
Score = 97.7 bits (244), Expect = 5e-23
Identities = 37/197 (18%), Positives = 68/197 (34%), Gaps = 35/197 (17%)
Query: 106 NVKVSRLLLLSGADANHITEFLGAAPALCLFAHEGNSEMIALLLEFH---ACIDLANSQG 162
++ L+ +GAD + + L A + M+ +L I+ + G
Sbjct: 178 RRRLVAYLMKAGADPTIYNKS-ERSA-LHQAAANRDFGMMVYMLNSTKLKGDIEELDRNG 235
Query: 163 RTPLSLAAGRGHMEAVRT---LVAAGA--------SLGRTDTTGRCALVHAARGGHLQ-- 209
T L + A + V + LV GA GR AL +AA+ ++
Sbjct: 236 MTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIV 295
Query: 210 -----------------NLSPLMLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQ 252
+P+MLA +EG L+Q A ++ D + T +A
Sbjct: 296 KYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQA 355
Query: 253 EGHVGLLELLLDKGADI 269
H ++++ +
Sbjct: 356 NNHHNIVDIFDRCRPER 372
Score = 92.7 bits (231), Expect = 3e-21
Identities = 25/189 (13%), Positives = 52/189 (27%), Gaps = 32/189 (16%)
Query: 153 ACIDLANSQGRTPLSLAAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLS 212
+ + + L A+ G+++ R +
Sbjct: 28 RKNHQSITSSQHSLLEASYDGYIKRQRNELQHY---SLY--------------------- 63
Query: 213 PLMLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILRE 272
P G+ + + + + L A G + E + + +I +
Sbjct: 64 PNPQGYGNGNDFLGDFNHTNLQIPTEPEPESPIKLHTEAA-GSYAITEPITRESVNI-ID 121
Query: 273 DGEGLTALSWACMRGRIQAVTYLLDR------DRGAMIEHVDINGLRPLDRAISCRNVPV 326
T L W + L+ GA + +D + PL A+ R +
Sbjct: 122 PRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRL 181
Query: 327 VQCFLRKGA 335
V ++ GA
Sbjct: 182 VAYLMKAGA 190
Score = 63.4 bits (155), Expect = 2e-11
Identities = 17/125 (13%), Positives = 30/125 (24%), Gaps = 13/125 (10%)
Query: 213 PLMLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILRE 272
L+ A +G+ LQH++ P G+ L +
Sbjct: 40 SLLEASYDGYIKRQRNELQHYS---------LYPNPQGYGNGNDFLGDFNHTNLQIPTEP 90
Query: 273 DGEGLTALSWACMRGRIQAVTYLLDRDRGAMIEHVDINGLRPLDRAISCRNVPVVQCFLR 332
+ E L G + I + L S + + +
Sbjct: 91 EPESPIKLHTEA-AGSYAITEPIT--RESVNIIDPR-HNRTVLHWIASNSSAEKSEDLIV 146
Query: 333 KGAKL 337
AK
Sbjct: 147 HEAKE 151
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system,
signal sequence, ankyrin repeat, chromodomain, type I
turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2
k.37.1.1 PDB: 3dep_A 1x32_A
Length = 183
Score = 121 bits (307), Expect = 1e-33
Identities = 41/182 (22%), Positives = 63/182 (34%), Gaps = 22/182 (12%)
Query: 158 ANSQGRTPLSLAAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPLMLA 217
+G + GH + A + T P A
Sbjct: 10 TAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVSEYET------------------PWWTA 51
Query: 218 VKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILREDGE-G 276
++ +LL +D D + +T L+ A G + LL + GAD+ D G
Sbjct: 52 ARKADEQALSQLL-EDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGG 110
Query: 277 LTALSWACMRGRIQAVTYLLDRDRGAMIEHVDINGLRPLDRAISCRNVPVVQCFLRKGAK 336
LTAL A R + V L+ + GA IE D GL L+ A ++ G +
Sbjct: 111 LTALHMAAGYVRPEVVEALV--ELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRR 168
Query: 337 LG 338
+G
Sbjct: 169 IG 170
Score = 114 bits (289), Expect = 5e-31
Identities = 40/182 (21%), Positives = 62/182 (34%), Gaps = 22/182 (12%)
Query: 132 ALCLFAHEGNSEMIALLLEFHACIDLANSQGRTPLSLAAGRGHMEAVRTLVAAGASLGRT 191
+ +G+S A + S+ TP AA + +A+ L+ +
Sbjct: 17 EYLIEWKDGHSPSWVPSSYIAADV---VSEYETPWWTAARKADEQALSQLLE-DRDVDAV 72
Query: 192 DTTGRCALVHAARGGHLQNLSPLMLAVKEGHWATAEKLLQHHAPLDQTDGSH-KTPLMIA 250
D GR + L+ G L + A LD D T L +A
Sbjct: 73 DENGR---------------TALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMA 117
Query: 251 AQEGHVGLLELLLDKGADILREDGEGLTALSWACMRGRIQAVTYLLDRDRGAMIEHVDIN 310
A ++E L++ GADI ED GLTAL A + + G I +
Sbjct: 118 AGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPM--QFGRRIGLEKVI 175
Query: 311 GL 312
+
Sbjct: 176 NV 177
Score = 71.8 bits (177), Expect = 4e-15
Identities = 33/154 (21%), Positives = 51/154 (33%), Gaps = 35/154 (22%)
Query: 113 LLLSGADANHITEFLGAAPALCLFAHEGNSEMIALLLEFHACIDLANSQ-GRTPLSLAAG 171
LL D + + E G L A G+ + + LL E A +D + + G T L +AAG
Sbjct: 62 QLLEDRDVDAVDEN-GRTA-LLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAG 119
Query: 172 RGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPLMLAVKEGHWATAEKLLQ 231
E V LV GA + D G + L LA + +Q
Sbjct: 120 YVRPEVVEALVELGADIEVEDERGL---------------TALELAREILKTTPKGNPMQ 164
Query: 232 HHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDK 265
+ G ++ +L +
Sbjct: 165 F-----------------GRRIGLEKVINVLEGQ 181
Score = 69.1 bits (170), Expect = 4e-14
Identities = 22/98 (22%), Positives = 35/98 (35%), Gaps = 6/98 (6%)
Query: 238 QTDGSHKTPLMIAAQEGHVGLLELLLDKGADILREDGEGLTALSWACMRGRIQAVTYLLD 297
+T G +I ++GH AD+ E T A + QA++ LL+
Sbjct: 9 RTAGEGAMEYLIEWKDGHSPSWVPSSYIAADV---VSEYETPWWTAARKADEQALSQLLE 65
Query: 298 RDRGAMIEHVDINGLRPLDRAISCRNVPVVQCFLRKGA 335
++ VD NG L + V+ GA
Sbjct: 66 ---DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGA 100
Score = 60.6 bits (148), Expect = 3e-11
Identities = 23/88 (26%), Positives = 36/88 (40%), Gaps = 1/88 (1%)
Query: 106 NVKVSRLLLLSGADANHITEFLGAAPALCLFAHEGNSEMIALLLEFHACIDLANSQGRTP 165
+ K RLL +GAD +H G L + A E++ L+E A I++ + +G T
Sbjct: 88 SDKCVRLLAEAGADLDHRDMRGGLTA-LHMAAGYVRPEVVEALVELGADIEVEDERGLTA 146
Query: 166 LSLAAGRGHMEAVRTLVAAGASLGRTDT 193
L LA + G +G
Sbjct: 147 LELAREILKTTPKGNPMQFGRRIGLEKV 174
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A
{Enterococcus faecalis}
Length = 201
Score = 121 bits (307), Expect = 2e-33
Identities = 35/188 (18%), Positives = 76/188 (40%), Gaps = 25/188 (13%)
Query: 137 AHEGNSEMIALLLEFHACIDLANSQGRTPLSLAAGRGHMEAVRTLVAAGASLGRTDTTGR 196
++ +L + +D +++G TPL++A +E + L+ GA + ++
Sbjct: 14 NQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISD 73
Query: 197 CALVHAARGGHLQ-------------------NLSPLMLAVKEGHWATAEKLLQH-HAPL 236
++A G + + L+ A ++GH + LL+ +
Sbjct: 74 SPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDI 133
Query: 237 DQTDGSHKTPLMIAA-----QEGHVGLLELLLDKGADILREDGEGLTALSWACMRGRIQA 291
D + T L+ A + + +++LL++ GAD +D G TA+ +A +G +
Sbjct: 134 DFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEI 193
Query: 292 VTYLLDRD 299
L +
Sbjct: 194 SKILAQYN 201
Score = 115 bits (291), Expect = 5e-31
Identities = 38/183 (20%), Positives = 64/183 (34%), Gaps = 22/183 (12%)
Query: 159 NSQGRTPLSLAAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPLMLAV 218
+ L A R + L + DT G +PL +AV
Sbjct: 3 TYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGN---------------TPLNIAV 47
Query: 219 KEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGA-DILREDGEGL 277
A+ L+ A ++ + +P + A +G +L +L D+ + + G
Sbjct: 48 HNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGG 107
Query: 278 TALSWACMRGRIQAVTYLLDRDRGAMIEHVDINGLRPLDRAISCRNVP-----VVQCFLR 332
AL A +G I V LL+ R I+ + G L A+ R +V+ +
Sbjct: 108 NALIPAAEKGHIDNVKLLLEDGR-EDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLME 166
Query: 333 KGA 335
GA
Sbjct: 167 NGA 169
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats,
A-helical domain, structural genomics, NPPSFA; 2.20A
{Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A
1ixv_A 1wg0_A
Length = 228
Score = 121 bits (305), Expect = 9e-33
Identities = 35/208 (16%), Positives = 68/208 (32%), Gaps = 17/208 (8%)
Query: 132 ALCLFAHEGNSEMIALLLEFH-ACIDLANSQGRTPLSLAAGRGHMEAVRTLVAAGASLGR 190
L E + LL + + + GR PL + E L++ ++
Sbjct: 5 PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 191 TDTTGRCALVHAARGGHLQNLSPLMLAVKEGHWATAEKLLQHH--APLDQTDGSHKTPLM 248
D +P +A G+ + L L++ T L
Sbjct: 65 DDYPDD------------SGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLH 112
Query: 249 IAAQEGHVGLLELLLDKGADILREDGEGLTALSWACMRGRIQAVTYLLDRDRGAMIEHVD 308
+A + + + L++ GA + +D L A G ++ + L + + + D
Sbjct: 113 LAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGK-SAVNWQD 171
Query: 309 INGLRPLDRAISCRNVPVVQCFLRK-GA 335
G PL A++ + + K GA
Sbjct: 172 KQGWTPLFHALAEGHGDAAVLLVEKYGA 199
Score = 116 bits (293), Expect = 5e-31
Identities = 53/217 (24%), Positives = 87/217 (40%), Gaps = 24/217 (11%)
Query: 108 KVSRLLLLSGADANHITEFLGAAPALCLFAHEGNSEMIALLLEFHACI---DLANSQGRT 164
KV LL + + G P L E+ + LL + D + G T
Sbjct: 17 KVQELLHSKPSLLLQKDQD-GRIP-LHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWT 74
Query: 165 PLSLAAGRGHMEAVRTLV--AAGASLGRTDTTGRCALVHAARGGHLQNLSPLMLAVKEGH 222
P +A G++E V++L L + G + L LAV +
Sbjct: 75 PFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGV---------------TCLHLAVGKKW 119
Query: 223 WATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKG-ADILREDGEGLTALS 281
+ ++ L+++ A + D ++ PL AA G + L+ELL G + + +D +G T L
Sbjct: 120 FEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLF 179
Query: 282 WACMRGRIQAVTYLLDRDRGAMIEHVDINGLRPLDRA 318
A G A L+++ GA + VD G + D A
Sbjct: 180 HALAEGHGDAAVLLVEKY-GAEYDLVDNKGAKAEDVA 215
Score = 105 bits (264), Expect = 7e-27
Identities = 47/198 (23%), Positives = 72/198 (36%), Gaps = 25/198 (12%)
Query: 106 NVKVSRLLLLSGADANHITEFL--GAAPALCLFAHEGNSEMIALLLEFH--ACIDLANSQ 161
+++ LL + N G P + GN E++ L + ++ +Q
Sbjct: 48 AHEITSFLLSKMENVNLDDYPDDSGWTP-FHIACSVGNLEVVKSLYDRPLKPDLNKITNQ 106
Query: 162 GRTPLSLAAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPLMLAVKEG 221
G T L LA G+ E + L+ GAS+ D + PL A G
Sbjct: 107 GVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQ---------------IPLHRAASVG 151
Query: 222 HWATAEKLLQHH-APLDQTDGSHKTPLMIAAQEGHVGLLELLLDK-GADILREDGEGLTA 279
E L + ++ D TPL A EGH LL++K GA+ D +G A
Sbjct: 152 SLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKA 211
Query: 280 LSWACMRGRIQAVTYLLD 297
A Q + L+
Sbjct: 212 EDVAL---NEQVKKFFLN 226
Score = 104 bits (261), Expect = 2e-26
Identities = 39/180 (21%), Positives = 65/180 (36%), Gaps = 23/180 (12%)
Query: 162 GRTPLSLAAGRGHMEAVRT-LVAAGASLGRTDTTGRCALVHAARGGHLQNLSPLMLAVKE 220
PL A V+ L + + L + D GR PL +V
Sbjct: 2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGR---------------IPLHWSVSF 46
Query: 221 GHWATAEKLLQHHA---PLDQTDGSHKTPLMIAAQEGHVGLLELLLDK--GADILREDGE 275
LL D D S TP IA G++ +++ L D+ D+ + +
Sbjct: 47 QAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQ 106
Query: 276 GLTALSWACMRGRIQAVTYLLDRDRGAMIEHVDINGLRPLDRAISCRNVPVVQCFLRKGA 335
G+T L A + + +L+ + GA + D PL RA S ++ +++ G
Sbjct: 107 GVTCLHLAVGKKWFEVSQFLI--ENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGK 164
Score = 68.2 bits (168), Expect = 2e-13
Identities = 24/97 (24%), Positives = 42/97 (43%), Gaps = 6/97 (6%)
Query: 244 KTPLMIAAQEGHVGLL-ELLLDKGADILREDGEGLTALSWACMRGRIQAVTYLLDRDRGA 302
PL A E + ELL K + +L++D +G L W+ + ++LL +
Sbjct: 3 NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLL--SKME 60
Query: 303 MI---EHVDINGLRPLDRAISCRNVPVVQCFLRKGAK 336
+ ++ D +G P A S N+ VV+ + K
Sbjct: 61 NVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLK 97
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch,
ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB:
3ixe_A 2kbx_A
Length = 179
Score = 118 bits (299), Expect = 2e-32
Identities = 45/192 (23%), Positives = 75/192 (39%), Gaps = 18/192 (9%)
Query: 158 ANSQGRTPLSLAAGRGHMEAVRTLVAAGAS-LGRTDTTGRCALVHAARGGHLQNLSPLML 216
+ + + G+ AVR + + L + D G SPL
Sbjct: 1 GSPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGF---------------SPLHW 45
Query: 217 AVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILREDGEG 276
A +EG A E L+ A ++ + TPL +AA GH +++ LL ADI + G
Sbjct: 46 ACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHG 105
Query: 277 LTALSWACMRGRIQAVTYLLDRDRGAMIEHVDINGLRPLDRAISCRNVPVVQCFLRKGAK 336
L +AC G+ Q L+ GA++ + G P+D+A + + + + G
Sbjct: 106 NVPLHYACFWGQDQVAEDLV--ANGALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQN 163
Query: 337 LGPTTWSMAAGK 348
L + K
Sbjct: 164 LNRIPYKDTFWK 175
Score = 118 bits (299), Expect = 2e-32
Identities = 37/174 (21%), Positives = 60/174 (34%), Gaps = 18/174 (10%)
Query: 137 AHEGNSEMIALLLEFHAC-IDLANSQGRTPLSLAAGRGHMEAVRTLVAAGASLGRTDTTG 195
EGN+ + L L+ ++ + G +PL A G V L+ GA + +
Sbjct: 13 CREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGD 72
Query: 196 RCALVHAARGGHLQNLSPLMLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGH 255
+PL LA GH +KLLQ+ A ++ + PL A G
Sbjct: 73 D---------------TPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQ 117
Query: 256 VGLLELLLDKGADILREDGEGLTALSWACMRGRIQAVTYLLDRDRGAMIEHVDI 309
+ E L+ GA + + G + A R G + +
Sbjct: 118 DQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAE--KMGQNLNRIPY 169
Score = 96.7 bits (242), Expect = 3e-24
Identities = 43/186 (23%), Positives = 67/186 (36%), Gaps = 24/186 (12%)
Query: 106 NVKVSRLLLLSGA-DANHITEFLGAAPALCLFAHEGNSEMIALLLEFHACIDLANSQGRT 164
N RL L + D N + G +P L EG S ++ +L+ A I++ N T
Sbjct: 17 NAVAVRLWLDNTENDLNQGDDH-GFSP-LHWACREGRSAVVEMLIMRGARINVMNRGDDT 74
Query: 165 PLSLAAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPLMLAVKEGHWA 224
PL LAA GH + V+ L+ A + + G PL A G
Sbjct: 75 PLHLAASHGHRDIVQKLLQYKADINAVNEHGN---------------VPLHYACFWGQDQ 119
Query: 225 TAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILREDGEGLTALSWAC 284
AE L+ + A + + + P+ A L E G ++ R
Sbjct: 120 VAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQNLNR------IPYKDTF 173
Query: 285 MRGRIQ 290
+G +
Sbjct: 174 WKGTTR 179
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A
{Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Length = 156
Score = 115 bits (292), Expect = 9e-32
Identities = 47/167 (28%), Positives = 68/167 (40%), Gaps = 18/167 (10%)
Query: 132 ALCLFAHEGNSEMIALLLEFH-ACIDLANSQGRTPLSLAAGRGHMEAVRTLVAAGASLGR 190
L A G+ + + LL D N G+T L + G L+ GAS
Sbjct: 5 RLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGASPNV 63
Query: 191 TDTTGRCALVHAARGGHLQNLSPLMLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIA 250
DT+G SP+ A + G T + L++H A ++ DG+ P+ +A
Sbjct: 64 QDTSGT---------------SPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLA 108
Query: 251 AQEGHVGLLELLLDKGADILREDGEGLTALSWACMRGRIQAVTYLLD 297
QEGH ++ L +D+ R D GLT L A RG V L
Sbjct: 109 VQEGHTAVVSFLA-AESDLHRRDARGLTPLELALQRGAQDLVDILQG 154
Score = 109 bits (276), Expect = 2e-29
Identities = 42/171 (24%), Positives = 67/171 (39%), Gaps = 20/171 (11%)
Query: 162 GRTPLSLAAGRGHMEAVRTLVAA-GASLGRTDTTGRCALVHAARGGHLQNLSPLMLAVKE 220
LS AA RG ++ VR L+ + G+ AL G
Sbjct: 2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTAL-QVMMFGSTA----------- 49
Query: 221 GHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILREDGEGLTAL 280
A +LL+ A + D S +P+ AA+ G + L++L++ GAD+ DG G +
Sbjct: 50 ----IALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPI 105
Query: 281 SWACMRGRIQAVTYLLDRDRGAMIEHVDINGLRPLDRAISCRNVPVVQCFL 331
A G V++L + + D GL PL+ A+ +V
Sbjct: 106 HLAVQEGHTAVVSFLAA---ESDLHRRDARGLTPLELALQRGAQDLVDILQ 153
Score = 94.4 bits (236), Expect = 1e-23
Identities = 42/161 (26%), Positives = 69/161 (42%), Gaps = 22/161 (13%)
Query: 106 NVKVSRLLLLS-GADANHITEFLGAAPALCL-FAHEGNSEMIALLLEFHACIDLANSQGR 163
+V+ R LL + + F G L G++ + LL+ A ++ ++ G
Sbjct: 14 DVQEVRRLLHRELVHPDALNRF-GKTA---LQVMMFGSTAIALELLKQGASPNVQDTSGT 69
Query: 164 TPLSLAAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPLMLAVKEGHW 223
+P+ AA G ++ ++ LV GA + D TG P+ LAV+EGH
Sbjct: 70 SPVHDAARTGFLDTLKVLVEHGADVNVPDGTGA---------------LPIHLAVQEGHT 114
Query: 224 ATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLD 264
A L + L + D TPL +A Q G L+++L
Sbjct: 115 AVVS-FLAAESDLHRRDARGLTPLELALQRGAQDLVDILQG 154
Score = 63.2 bits (155), Expect = 2e-12
Identities = 26/118 (22%), Positives = 38/118 (32%), Gaps = 12/118 (10%)
Query: 245 TPLMIAAQEGHVGLLELLLDK-GADILREDGEGLTALSWACMRGRIQAVTYLLDRDRGAM 303
L AA G V + LL + + G TAL G LL + GA
Sbjct: 4 DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQ--GAS 60
Query: 304 IEHVDINGLRPLDRAISCRNVPVVQCFLRKGA------KLGPTTWSMAA--GKPEVME 353
D +G P+ A + ++ + GA G +A G V+
Sbjct: 61 PNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVS 118
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle
inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A
{Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A
1mx2_A 1mx6_A
Length = 162
Score = 114 bits (288), Expect = 4e-31
Identities = 44/175 (25%), Positives = 69/175 (39%), Gaps = 19/175 (10%)
Query: 162 GRTPLSLAAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPLMLAVKEG 221
L+ AA RG +E + +L+ ++ + GR AL + G+ +
Sbjct: 5 WGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTAL-QVMKLGNPE------------ 51
Query: 222 HWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILREDGEGLTALS 281
A +LL A D D + + AA+ G + L+ LL+ AD+ ED EG L
Sbjct: 52 ---IARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLH 108
Query: 282 WACMRGRIQAVTYLLDRDRGAM-IEHVDINGLRPLDRAISCRNVPVVQCFLRKGA 335
A G ++ V +L+ A + H + G D A VV GA
Sbjct: 109 LAAKEGHLRVVEFLV--KHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161
Score = 104 bits (261), Expect = 4e-27
Identities = 49/172 (28%), Positives = 78/172 (45%), Gaps = 19/172 (11%)
Query: 132 ALCLFAHEGNSEMIALLLEFHACIDLANSQGRTPLSLAAGRGHMEAVRTLVAAGASLGRT 191
L A G+ E + LL+ + ++ N GRT L + G+ E R L+ GA+
Sbjct: 8 ELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMK-LGNPEIARRLLLRGANPDLK 66
Query: 192 DTTGRCALVHAARGGHLQNLSPLMLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAA 251
D TG + AAR G L T + LL+ A ++ D PL +AA
Sbjct: 67 DRTGFAVIHDAARAGFLD---------------TLQTLLEFQADVNIEDNEGNLPLHLAA 111
Query: 252 QEGHVGLLELLLDKGA-DILREDGEGLTALSWACMRGRIQAVTYLLDRDRGA 302
+EGH+ ++E L+ A ++ + +G TA A + GR + V+ + GA
Sbjct: 112 KEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQ--ANGA 161
Score = 91.7 bits (229), Expect = 2e-22
Identities = 41/164 (25%), Positives = 63/164 (38%), Gaps = 21/164 (12%)
Query: 106 NVKVSRLLLLSGADANHITEFLGAAPALCL-FAHEGNSEMIALLLEFHACIDLANSQGRT 164
+++ LL + + N F G L GN E+ LL A DL + G
Sbjct: 17 DLEQLTSLLQNNVNVNAQNGF-GRTA---LQVMKLGNPEIARRLLLRGANPDLKDRTGFA 72
Query: 165 PLSLAAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPLMLAVKEGHWA 224
+ AA G ++ ++TL+ A + D G PL LA KEGH
Sbjct: 73 VIHDAARAGFLDTLQTLLEFQADVNIEDNEGN---------------LPLHLAAKEGHLR 117
Query: 225 TAEKLLQHHAP-LDQTDGSHKTPLMIAAQEGHVGLLELLLDKGA 267
E L++H A + + T +A G ++ L+ GA
Sbjct: 118 VVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161
Score = 35.4 bits (83), Expect = 0.009
Identities = 13/61 (21%), Positives = 22/61 (36%), Gaps = 3/61 (4%)
Query: 275 EGLTALSWACMRGRIQAVTYLLDRDRGAMIEHVDINGLRPLDRAISCRNVPVVQCFLRKG 334
L+ A RG ++ +T LL + + G L N + + L +G
Sbjct: 4 PWGNELASAAARGDLEQLTSLL--QNNVNVNAQNGFGRTALQVM-KLGNPEIARRLLLRG 60
Query: 335 A 335
A
Sbjct: 61 A 61
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein
binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Length = 192
Score = 115 bits (290), Expect = 5e-31
Identities = 56/215 (26%), Positives = 84/215 (39%), Gaps = 28/215 (13%)
Query: 117 GADANHITEFLGAAPALCLFAHEGNSEMIALLLEFHACIDLANSQGRTPLSLAAGRGHME 176
G+ + E + + ++ + L + +S RTPL +A G
Sbjct: 1 GSHMDKNGEI-----VEKIKDEKSINQNLDFL------RNYRDSYNRTPLMVACMLGMEN 49
Query: 177 AVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPLMLAVKEGHWATAEKLLQHHAPL 236
A+ LV L D G + L+ AVK AEKLL + +
Sbjct: 50 AIDKLVENFDKLEDKDIEGS---------------TALIWAVKNNRLGIAEKLLSKGSNV 94
Query: 237 DQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILREDGEGLTALSWACMRGRIQAVTYLL 296
+ D S KTPLM + G+ + LL+ GA++ + EG T L A GR + V LL
Sbjct: 95 NTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLL 154
Query: 297 DRDRGAMIEHVDINGLRPLDRAISCRNVPVVQCFL 331
+ GA I D+ GL A V++ F
Sbjct: 155 EL--GADISARDLTGLTAEASARIFGRQEVIKIFT 187
Score = 100 bits (251), Expect = 3e-25
Identities = 41/178 (23%), Positives = 70/178 (39%), Gaps = 23/178 (12%)
Query: 158 ANSQGRTPLSLAAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPLMLA 217
+ G + + + + L S RT PLM+A
Sbjct: 4 MDKNGEIVEKIKDEKSINQNLDFLRNYRDSYNRT---------------------PLMVA 42
Query: 218 VKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILREDGEGL 277
G +KL+++ L+ D T L+ A + +G+ E LL KG+++ +D G
Sbjct: 43 CMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGK 102
Query: 278 TALSWACMRGRIQAVTYLLDRDRGAMIEHVDINGLRPLDRAISCRNVPVVQCFLRKGA 335
T L W+ + G + +LL + GA + ++ G PL A +V+ L GA
Sbjct: 103 TPLMWSIIFGYSEMSYFLL--EHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGA 158
Score = 63.2 bits (155), Expect = 4e-12
Identities = 21/147 (14%), Positives = 43/147 (29%), Gaps = 20/147 (13%)
Query: 106 NVKVSRLLLLSGADANHITEFLGAAPALCLFAHEGNSEMIALLLEFHACIDLANSQGRTP 165
L+ + G+ L + LL + ++ + G+TP
Sbjct: 47 MENAIDKLVENFDKLEDKDIE-GSTA-LIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTP 104
Query: 166 LSLAAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQ---------------- 209
L + G+ E L+ GA++ + G L+ A++ G +
Sbjct: 105 LMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARD 164
Query: 210 --NLSPLMLAVKEGHWATAEKLLQHHA 234
L+ A G + +
Sbjct: 165 LTGLTAEASARIFGRQEVIKIFTEVRR 191
Score = 42.0 bits (100), Expect = 9e-05
Identities = 22/79 (27%), Positives = 33/79 (41%), Gaps = 2/79 (2%)
Query: 109 VSRLLLLSGADANHITEFLGAAPALCLFAHEGNSEMIALLLEFHACIDLANSQGRTPLSL 168
+S LL GA+ N G P L + + G SE++ LLE A I + G T +
Sbjct: 116 MSYFLLEHGANVNDRNLE-GETP-LIVASKYGRSEIVKKLLELGADISARDLTGLTAEAS 173
Query: 169 AAGRGHMEAVRTLVAAGAS 187
A G E ++ +
Sbjct: 174 ARIFGRQEVIKIFTEVRRA 192
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin
repeat Pro ribosome display, apoptosis; 1.80A {Synthetic
source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D*
3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B*
2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Length = 169
Score = 113 bits (286), Expect = 1e-30
Identities = 54/172 (31%), Positives = 77/172 (44%), Gaps = 17/172 (9%)
Query: 162 GRTPLSLAAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPLMLAVKEG 221
L AA G + VR L+A GA + D +G +PL LA G
Sbjct: 14 LGKKLLEAARAGRDDEVRILMANGADVNAEDASGW---------------TPLHLAAFNG 58
Query: 222 HWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILREDGEGLTALS 281
H E LL++ A ++ D + TPL +AA GH+ ++E+LL GAD+ D EG T L
Sbjct: 59 HLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLH 118
Query: 282 WACMRGRIQAVTYLLDRDRGAMIEHVDINGLRPLDRAISCRNVPVVQCFLRK 333
A M G ++ V LL GA + D G D +I N + + +
Sbjct: 119 LAAMFGHLEIVEVLL--KNGADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 168
Score = 111 bits (281), Expect = 6e-30
Identities = 53/182 (29%), Positives = 80/182 (43%), Gaps = 16/182 (8%)
Query: 115 LSGADANHITEFLGAAPALCLFAHEGNSEMIALLLEFHACIDLANSQGRTPLSLAAGRGH 174
+ G+ +H L A G + + +L+ A ++ ++ G TPL LAA GH
Sbjct: 1 MRGSHHHHHHGSDLGKK-LLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGH 59
Query: 175 MEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPLMLAVKEGHWATAEKLLQHHA 234
+E V L+ GA + D G +PL LA GH E LL++ A
Sbjct: 60 LEIVEVLLKNGADVNAVDHAGM---------------TPLRLAALFGHLEIVEVLLKNGA 104
Query: 235 PLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILREDGEGLTALSWACMRGRIQAVTY 294
++ D TPL +AA GH+ ++E+LL GAD+ +D G TA + G
Sbjct: 105 DVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEI 164
Query: 295 LL 296
L
Sbjct: 165 LQ 166
Score = 94.4 bits (236), Expect = 2e-23
Identities = 40/123 (32%), Positives = 63/123 (51%), Gaps = 2/123 (1%)
Query: 213 PLMLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILRE 272
L+ A + G L+ + A ++ D S TPL +AA GH+ ++E+LL GAD+
Sbjct: 17 KLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAV 76
Query: 273 DGEGLTALSWACMRGRIQAVTYLLDRDRGAMIEHVDINGLRPLDRAISCRNVPVVQCFLR 332
D G+T L A + G ++ V LL GA + D+ G PL A ++ +V+ L+
Sbjct: 77 DHAGMTPLRLAALFGHLEIVEVLLKN--GADVNANDMEGHTPLHLAAMFGHLEIVEVLLK 134
Query: 333 KGA 335
GA
Sbjct: 135 NGA 137
Score = 75.5 bits (187), Expect = 1e-16
Identities = 39/136 (28%), Positives = 59/136 (43%), Gaps = 17/136 (12%)
Query: 226 AEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILREDGEGLTALSWACM 285
+ H + D L+ AA+ G + +L+ GAD+ ED G T L A
Sbjct: 4 SHHHHHHGS-----DL--GKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAF 56
Query: 286 RGRIQAVTYLLDRDRGAMIEHVDINGLRPLDRAISCRNVPVVQCFLRKGA------KLGP 339
G ++ V LL GA + VD G+ PL A ++ +V+ L+ GA G
Sbjct: 57 NGHLEIVEVLLKN--GADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGH 114
Query: 340 TTWSMAA--GKPEVME 353
T +AA G E++E
Sbjct: 115 TPLHLAAMFGHLEIVE 130
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase,
cyclin dependent kinase inhibitory protein, CDK, cell
cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A
1dc2_A 2a5e_A
Length = 156
Score = 113 bits (285), Expect = 1e-30
Identities = 40/158 (25%), Positives = 57/158 (36%), Gaps = 24/158 (15%)
Query: 162 GRTPLSLAAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPLMLAVKEG 221
L+ AA RG +E VR L+ AGA+ ++ GR P+ + + G
Sbjct: 12 SADWLATAAARGRVEEVRALLEAGANPNAPNSYGR---------------RPIQVMMM-G 55
Query: 222 HWATAEKLLQHHAPLDQTDGSHKT-PLMIAAQEGHVGLLELLLDKGADILREDGEGLTAL 280
AE LL H A + D + T P+ AA+EG + L +L GA + D G +
Sbjct: 56 SARVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPV 115
Query: 281 SWACMRGRIQAVTYLLDRDRGAMIEHVDINGLRPLDRA 318
A G YL G
Sbjct: 116 DLAEELGHRDVARYLR--AAAG-----GTRGSNHARID 146
Score = 105 bits (264), Expect = 1e-27
Identities = 35/156 (22%), Positives = 48/156 (30%), Gaps = 20/156 (12%)
Query: 132 ALCLFAHEGNSEMIALLLEFHACIDLANSQGRTPLSLAAGRGHMEAVRTLVAAGASLGRT 191
L A G E + LLE A + NS GR P+ + G L+ GA
Sbjct: 15 WLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCA 73
Query: 192 DTTGRCALVHAARGGHLQNLSPLMLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAA 251
D P+ A +EG T L + A LD D + P+ +A
Sbjct: 74 DPATLT--------------RPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAE 119
Query: 252 QEGHVGLLELLLDKGADILREDGEGLTALSWACMRG 287
+ GH + L G G
Sbjct: 120 ELGHRDVARYLRAAAGGT-----RGSNHARIDAAEG 150
Score = 80.2 bits (199), Expect = 2e-18
Identities = 39/152 (25%), Positives = 55/152 (36%), Gaps = 26/152 (17%)
Query: 106 NVKVSRLLLLSGADANHITEFLGAAPALCL-FAHEGNSEMIALLLEFHACIDLANSQGRT 164
V+ R LL +GA+ N + G P + G++ + LLL A + A+ T
Sbjct: 24 RVEEVRALLEAGANPNAPNSY-GRRP---IQVMMMGSARVAELLLLHGAEPNCADPATLT 79
Query: 165 -PLSLAAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPLMLAVKEGHW 223
P+ AA G ++ + L AGA L D GR P+ LA + GH
Sbjct: 80 RPVHDAAREGFLDTLVVLHRAGARLDVRDAWGR---------------LPVDLAEELGHR 124
Query: 224 ATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGH 255
A L I A EG
Sbjct: 125 DVARYLRAAAG-----GTRGSNHARIDAAEGP 151
Score = 51.7 bits (125), Expect = 2e-08
Identities = 19/73 (26%), Positives = 29/73 (39%), Gaps = 5/73 (6%)
Query: 263 LDKGADILREDGEGLTALSWACMRGRIQAVTYLLDRDRGAMIEHVDINGLRPLDRAISCR 322
++ A E L+ A RGR++ V LL + GA + G RP+
Sbjct: 1 MEPAAGSSMEPSA--DWLATAAARGRVEEVRALL--EAGANPNAPNSYGRRPIQVM-MMG 55
Query: 323 NVPVVQCFLRKGA 335
+ V + L GA
Sbjct: 56 SARVAELLLLHGA 68
Score = 39.4 bits (93), Expect = 4e-04
Identities = 11/73 (15%), Positives = 22/73 (30%), Gaps = 7/73 (9%)
Query: 106 NVKVSRLLLLSGADANHITEFLGAAPALCLFAHEGNSEMIALLLEFHACIDLANSQGRTP 165
+ +L +GA + + G P + L G+ ++ L G
Sbjct: 90 FLDTLVVLHRAGARLDVRDAW-GRLP-VDLAEELGHRDVARYLRAAAGGTR-----GSNH 142
Query: 166 LSLAAGRGHMEAV 178
+ A G +
Sbjct: 143 ARIDAAEGPSDIP 155
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin
repeat, signaling protein; NMR {Mus musculus} SCOP:
i.11.1.1
Length = 136
Score = 112 bits (283), Expect = 1e-30
Identities = 40/149 (26%), Positives = 57/149 (38%), Gaps = 19/149 (12%)
Query: 155 IDLANSQGRTPLSLAAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPL 214
I + L+ AA RG +E VR L+ AGA + GR P+
Sbjct: 5 IHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGR---------------RPI 49
Query: 215 MLAVKEGHWATAEKLLQHHAPLDQTDGSHKT-PLMIAAQEGHVGLLELLLDKGADILRED 273
+ + G AE LL H A + D + T P+ AA+EG + L +L GA + D
Sbjct: 50 QVMMM-GSAQVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCD 108
Query: 274 GEGLTALSWACMRGRIQAVTYLLDRDRGA 302
G + A +G YL
Sbjct: 109 AWGRLPVDLAEEQGHRDIARYLH--AATG 135
Score = 101 bits (254), Expect = 2e-26
Identities = 34/152 (22%), Positives = 51/152 (33%), Gaps = 17/152 (11%)
Query: 117 GADANHITEFLGAAPALCLFAHEGNSEMIALLLEFHACIDLANSQGRTPLSLAAGRGHME 176
+ + A L A G E + LLE A + N GR P+ + G +
Sbjct: 2 SPGIHMLGGS-SDAG-LATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMM-MGSAQ 58
Query: 177 AVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPLMLAVKEGHWATAEKLLQHHAPL 236
L+ GA D P+ A +EG T L + A L
Sbjct: 59 VAELLLLHGAEPNCADPATLT--------------RPVHDAAREGFLDTLVVLHRAGARL 104
Query: 237 DQTDGSHKTPLMIAAQEGHVGLLELLLDKGAD 268
D D + P+ +A ++GH + L D
Sbjct: 105 DVCDAWGRLPVDLAEEQGHRDIARYLHAATGD 136
Score = 75.9 bits (188), Expect = 4e-17
Identities = 27/103 (26%), Positives = 35/103 (33%), Gaps = 4/103 (3%)
Query: 234 APLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILREDGEGLTALSWACMRGRIQAVT 293
+ GS L AA G V + LL+ GAD + G + G Q
Sbjct: 3 PGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMM-MGSAQVAE 61
Query: 294 YLLDRDRGAMIEHVDINGL-RPLDRAISCRNVPVVQCFLRKGA 335
LL GA D L RP+ A + + R GA
Sbjct: 62 LLL--LHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGA 102
Score = 66.3 bits (163), Expect = 1e-13
Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Query: 106 NVKVSRLLLLSGADANHITEFLGAAPALCLFAHEGNSEMIALLLEFHACIDLANSQGRTP 165
+ +V+ LLLL GA+ N + A EG + + +L A +D+ ++ GR P
Sbjct: 56 SAQVAELLLLHGAEPNCADPA-TLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLP 114
Query: 166 LSLAAGRGHMEAVRTLVAAGA 186
+ LA +GH + R L AA
Sbjct: 115 VDLAEEQGHRDIARYLHAATG 135
Score = 52.4 bits (127), Expect = 9e-09
Identities = 18/70 (25%), Positives = 28/70 (40%), Gaps = 3/70 (4%)
Query: 266 GADILREDGEGLTALSWACMRGRIQAVTYLLDRDRGAMIEHVDINGLRPLDRAISCRNVP 325
I G L+ A RG+++ V LL + GA ++ G RP+ +
Sbjct: 2 SPGIHMLGGSSDAGLATAAARGQVETVRQLL--EAGADPNALNRFGRRPIQVM-MMGSAQ 58
Query: 326 VVQCFLRKGA 335
V + L GA
Sbjct: 59 VAELLLLHGA 68
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene
family, nuclear protein, phosphorylation, disease
mutation, polymorphism; 2.20A {Homo sapiens} SCOP:
b.34.2.1 d.211.1.1 PDB: 4a63_B
Length = 239
Score = 115 bits (289), Expect = 2e-30
Identities = 27/180 (15%), Positives = 58/180 (32%), Gaps = 21/180 (11%)
Query: 162 GRTPLSLAAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPLMLAVKEG 221
G+ L + +A G + L+ L+ + EG
Sbjct: 5 GQVSLPPGKRTNLRKTGSERIAHGMRVKFNP----------------LPLALLLDSSLEG 48
Query: 222 HWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILREDGEGLTALS 281
+ ++++ + T L A GH +++ L+ G ++ D +G T L
Sbjct: 49 EFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLH 108
Query: 282 WACMRGRIQAVTYLLDRDRGAMIEHVDINGLR---PLDRAISCRNVPVVQCFLRKGAKLG 338
A +Q +L+ + GA + + + ++ + Q K+G
Sbjct: 109 CAASCNNVQVCKFLV--ESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMG 166
Score = 108 bits (273), Expect = 4e-28
Identities = 33/185 (17%), Positives = 59/185 (31%), Gaps = 21/185 (11%)
Query: 106 NVKVSRLLLLSGADANHITEFLGAAPALCLFAHEGNSEMIALLLEFHACIDLANSQGRTP 165
K + G L A L + EG +++ ++ L N +G T
Sbjct: 17 LRKTGSERIAHGMRVK--FNPLPLAL-LLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITA 73
Query: 166 LSLAAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPLMLAVKEGHWAT 225
L A GH E V+ LV G ++ D+ G +PL A +
Sbjct: 74 LHNAVCAGHTEIVKFLVQFGVNVNAADSDGW---------------TPLHCAASCNNVQV 118
Query: 226 AEKLLQHHAPL---DQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILREDGEGLTALSW 282
+ L++ A + +D +EG+ + L + + + AL
Sbjct: 119 CKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALWD 178
Query: 283 ACMRG 287
+
Sbjct: 179 YEPQN 183
Score = 58.8 bits (143), Expect = 3e-10
Identities = 24/155 (15%), Positives = 43/155 (27%), Gaps = 21/155 (13%)
Query: 106 NVKVSRLLLLSGADANHITEFLGAAPALCLFAHEGNSEMIALLLEFHACIDLANS---QG 162
+ ++ + L+ G + N G P L A N ++ L+E A + Q
Sbjct: 82 HTEIVKFLVQFGVNVNAADSD-GWTP-LHCAASCNNVQVCKFLVESGAAVFAMTYSDMQT 139
Query: 163 RTPLSLAAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPLMLAVKEGH 222
G+ + + L +G + AL + L +KEG
Sbjct: 140 AADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALWDYEPQNDDE------LPMKEGD 193
Query: 223 WATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVG 257
T + + A G
Sbjct: 194 CMTI----------IHREDEDEIEWWWARLNDKEG 218
Score = 37.2 bits (87), Expect = 0.005
Identities = 7/63 (11%), Positives = 19/63 (30%), Gaps = 3/63 (4%)
Query: 273 DGEGLTALSWACMRGRIQAVTYLLDRDRGAMIEHVDINGLRPLDRAISCRNVPVVQCFLR 332
+ G +L + + + G ++ + L L + +VQ +
Sbjct: 2 EITGQVSLPPGKRTNLRKTGSERI--AHGMRVK-FNPLPLALLLDSSLEGEFDLVQRIIY 58
Query: 333 KGA 335
+
Sbjct: 59 EVD 61
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat,
chromodomain, aromatic CAGE, signal recognit particle,
protein targeting; 3.18A {Arabidopsis thaliana} PDB:
1x3q_A 2hug_A
Length = 244
Score = 114 bits (288), Expect = 3e-30
Identities = 46/236 (19%), Positives = 74/236 (31%), Gaps = 32/236 (13%)
Query: 114 LLSGADANHITEFLGAAPALCLFAHEGNSEMIALLLEFHACIDLANSQGRTPLSLAAGRG 173
+ G+ A + +G+S A + S+ TP AA +
Sbjct: 5 KIIGSRTAGEG-----AMEYLIEWKDGHSPSWVPSSYIAADV---VSEYETPWWTAARKA 56
Query: 174 HMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPLMLAVKEGHWATAEKLLQHH 233
+A+ L+ + D GR + L+ G L +
Sbjct: 57 DEQALSQLLE-DRDVDAVDENGR---------------TALLFVAGLGSDKCVRLLAEAG 100
Query: 234 APLDQTDGSH-KTPLMIAAQEGHVGLLELLLDKGADILREDGEGLTALSWACMRGRIQAV 292
A LD D T L +AA ++E L++ GADI ED GLTAL A +
Sbjct: 101 ADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPK 160
Query: 293 TYLLDRDRGAMIEHVDINGLRPLDRAISCRNVPVVQCFLRKGAKLGPTTWSMAAGK 348
+ G I + + V + ++G G + K
Sbjct: 161 GNPM--QFGRRIGLEKVI---NVLEGQVFEYAEVDEIVEKRGK--GKDVEYLVRWK 209
Score = 106 bits (267), Expect = 3e-27
Identities = 38/215 (17%), Positives = 60/215 (27%), Gaps = 46/215 (21%)
Query: 106 NVKVSRLLLLSGADANH--ITEFLGAAPALCLFAHEGNSEMIALLLEFHACIDLANSQGR 163
+ AD T A + + + ++ LLE +D + GR
Sbjct: 27 HSPSWVPSSYIAADVVSEYET-------PWWTAARKADEQALSQLLE-DRDVDAVDENGR 78
Query: 164 TPLSLAAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPLMLAVKEGHW 223
T L AG G + VR L AGA L D G L+ L +A
Sbjct: 79 TALLFVAGLGSDKCVRLLAEAGADLDHRDMRG--------------GLTALHMAAGYVRP 124
Query: 224 ATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGAD--------------- 268
E L++ A ++ D T L +A + + G
Sbjct: 125 EVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQVF 184
Query: 269 -------ILREDGEGLTALSWACMRGRIQAVTYLL 296
I+ + G+G +
Sbjct: 185 EYAEVDEIVEKRGKGKDVEYLVRWKDGGDCEWVKG 219
Score = 101 bits (255), Expect = 2e-25
Identities = 39/193 (20%), Positives = 63/193 (32%), Gaps = 28/193 (14%)
Query: 113 LLLSGADANHITEFLGAAPALCLFAHEGNSEMIALLLEFHACIDLANSQ-GRTPLSLAAG 171
LL D + + E G L A G+ + + LL E A +D + + G T L +AAG
Sbjct: 63 QLLEDRDVDAVDEN-GRTA-LLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAG 120
Query: 172 RGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHL---------------QNLSPLML 216
E V LV GA + D G AL A + + ++
Sbjct: 121 YVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLE 180
Query: 217 AVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILREDGEG 276
+ E + + G K + + + A+ + +D E
Sbjct: 181 GQVFEYAEVDEIVEK--------RGKGKDVEYLVRWKDGGDCEWVKGVHVAEDVAKDYE- 231
Query: 277 LTALSWACMRGRI 289
L +A I
Sbjct: 232 -DGLEYAVAESVI 243
Score = 56.1 bits (136), Expect = 2e-09
Identities = 29/133 (21%), Positives = 45/133 (33%), Gaps = 29/133 (21%)
Query: 244 KTPLMIA--------------AQEGHVGLLELLLDKGADILREDGEGLTALSWACMRGRI 289
+ +I ++GH AD+ E T A +
Sbjct: 2 EVNKIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADV---VSEYETPWWTAARKADE 58
Query: 290 QAVTYLLDRDRGAMIEHVDINGLRPLDRAISCRNVPVVQCFLRKGA-------KLGPTTW 342
QA++ LL+ ++ VD NG L + V+ GA + G T
Sbjct: 59 QALSQLLE---DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTAL 115
Query: 343 SMAA--GKPEVME 353
MAA +PEV+E
Sbjct: 116 HMAAGYVRPEVVE 128
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6
ATPase, P-benzoyl-L-phenylalanine, PBPA, amber
suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A
2dwz_A* 1tr4_A 1uoh_A 1qym_A
Length = 231
Score = 114 bits (286), Expect = 3e-30
Identities = 52/229 (22%), Positives = 81/229 (35%), Gaps = 23/229 (10%)
Query: 131 PALCLFAHEGNSEMIALLLEFHACIDLANSQGRTPLSLAAGRGHMEAVRTLVAAGASLGR 190
L E+ +L + + RT L A GH E V L+ G +
Sbjct: 9 MICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVND 68
Query: 191 TDTTGRCALVHAARGGHLQNLSPLMLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIA 250
D G SPL +A G + LL A ++ + + TPL A
Sbjct: 69 KDDAGW---------------SPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYA 113
Query: 251 AQEGHVGLLELLLDKGADILREDGEGLTALSWACMRGRIQAVTYLLDRDRGAMIEHVDIN 310
A + + +LL+ GA+ +D TA+ A +G ++ V LL A D
Sbjct: 114 ASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILL--FYKASTNIQDTE 171
Query: 311 GLRPLDRAISCRNVPVVQCFLRKGAKL------GPTTWSMAAGKPEVME 353
G PL A V + + +GA + T +A G ++
Sbjct: 172 GNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAKGGLGLIL 220
Score = 111 bits (278), Expect = 5e-29
Identities = 51/230 (22%), Positives = 93/230 (40%), Gaps = 21/230 (9%)
Query: 106 NVKVSRLLLLSGADANHITEFLGAAPALCLFAHEGNSEMIALLLEFHACIDLANSQGRTP 165
++ +L + A + L G++E++ LL+ ++ + G +P
Sbjct: 19 LDELKERILADKSLATRTDQD-SRTA-LHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSP 76
Query: 166 LSLAAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPLMLAVKEGHWAT 225
L +AA G E V+ L+ GA + + G +PL A +
Sbjct: 77 LHIAASAGXDEIVKALLVKGAHVNAVNQNGC---------------TPLHYAASKNRHEI 121
Query: 226 AEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILREDGEGLTALSWACM 285
A LL+ A D D T + AA +G++ ++ +LL A +D EG T L AC
Sbjct: 122 AVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACD 181
Query: 286 RGRIQAVTYLLDRDRGAMIEHVDINGLRPLDRAISCRNVPVVQCFLRKGA 335
R++ +L+ +GA I + PL ++ + ++ L +G
Sbjct: 182 EERVEEAKFLV--TQGASIYIENKEEKTPLQ--VAKGGLGLILKRLAEGE 227
Score = 89.2 bits (221), Expect = 6e-21
Identities = 36/128 (28%), Positives = 52/128 (40%), Gaps = 2/128 (1%)
Query: 210 NLSPLMLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADI 269
N+ LA E++L + +TD +T L A GH ++E LL G +
Sbjct: 7 NIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV 66
Query: 270 LREDGEGLTALSWACMRGRIQAVTYLLDRDRGAMIEHVDINGLRPLDRAISCRNVPVVQC 329
+D G + L A G + V LL +GA + V+ NG PL A S +
Sbjct: 67 NDKDDAGWSPLHIAASAGXDEIVKALL--VKGAHVNAVNQNGCTPLHYAASKNRHEIAVM 124
Query: 330 FLRKGAKL 337
L GA
Sbjct: 125 LLEGGANP 132
Score = 88.8 bits (220), Expect = 1e-20
Identities = 48/182 (26%), Positives = 74/182 (40%), Gaps = 22/182 (12%)
Query: 106 NVKVSRLLLLSGADANHITEFLGAAPALCLFAHEGNSEMIALLLEFHACIDLANSQGRTP 165
+ ++ LL G N + G +P L + A G E++ LL A ++ N G TP
Sbjct: 52 HTEIVEFLLQLGVPVNDKDDA-GWSP-LHIAASAGXDEIVKALLVKGAHVNAVNQNGCTP 109
Query: 166 LSLAAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQ---------------- 209
L AA + E L+ GA+ D A+ AA G+L+
Sbjct: 110 LHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQD 169
Query: 210 --NLSPLMLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGA 267
+PL LA E A+ L+ A + + KTPL +A G +GL+ L +G
Sbjct: 170 TEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAK--GGLGLILKRLAEGE 227
Query: 268 DI 269
+
Sbjct: 228 EA 229
Score = 70.7 bits (173), Expect = 2e-14
Identities = 29/96 (30%), Positives = 40/96 (41%), Gaps = 2/96 (2%)
Query: 242 SHKTPLMIAAQEGHVGLLELLLDKGADILREDGEGLTALSWACMRGRIQAVTYLLDRDRG 301
S+ +A L E +L + R D + TAL WAC G + V +LL G
Sbjct: 6 SNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLL--QLG 63
Query: 302 AMIEHVDINGLRPLDRAISCRNVPVVQCFLRKGAKL 337
+ D G PL A S +V+ L KGA +
Sbjct: 64 VPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHV 99
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein
structure initiati midwest center F or structural
genomics, MCSG; 1.77A {Leptotrichia buccalis}
Length = 186
Score = 112 bits (281), Expect = 7e-30
Identities = 30/193 (15%), Positives = 54/193 (27%), Gaps = 26/193 (13%)
Query: 158 ANSQ-GRTPLSLAAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPLML 216
+N+ +S AA G E L G ++ + +++ L
Sbjct: 1 SNAMSEYRTVSAAAMLGTYEDFLELFEKGYED--KESVLKSNILYDV----------LRN 48
Query: 217 AVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGH------VGLLELLLDKGADIL 270
E + + L+ A + T Q G L ++ L+KGADI
Sbjct: 49 NNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADIT 108
Query: 271 REDGEGLTALSWACMRG------RIQAVTYLLDRDRGAMIEHVDINGLRPLDRAISCRNV 324
+ I + + G + D GL L+ C+
Sbjct: 109 ALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQ-SGLQLLIKDKWGLTALEFVKRCQKP 167
Query: 325 PVVQCFLRKGAKL 337
++ K
Sbjct: 168 IALKMMEDYIKKY 180
Score = 100 bits (252), Expect = 1e-25
Identities = 22/173 (12%), Positives = 40/173 (23%), Gaps = 19/173 (10%)
Query: 106 NVKVSRLLLLSGADANHI---TEFLGAAPALCLFAHEGNSEMIALLLEFHACIDLANSQG 162
+ L G + + L L E ++ L+ A I +G
Sbjct: 18 TYEDFLELFEKGYEDKESVLKSNILYDV--LRNNNDEARYKISMFLINKGADIKSRTKEG 75
Query: 163 RTPLSLAAGRGH------MEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPLML 216
T G E + + GA + + + + + L
Sbjct: 76 TTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPL 135
Query: 217 AVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADI 269
Q L D T L + L+++ D
Sbjct: 136 Y--------KLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKKY 180
Score = 98.6 bits (246), Expect = 9e-25
Identities = 28/189 (14%), Positives = 49/189 (25%), Gaps = 21/189 (11%)
Query: 132 ALCLFAHEGNSEMIALLLEFHACIDLANSQ---GRTPLSLAAGRGHMEAVRTLVAAGASL 188
+ A G E L E + + L + L+ GA +
Sbjct: 9 TVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADI 68
Query: 189 GRTDTTGRCALVHAARGGHLQNLSPLMLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLM 248
G +GG G + L+ A + +K +
Sbjct: 69 KSRTKEGTTLFFPLFQGGGNDI---------TGTTELCKIFLEKGADITALYKPYKIVVF 119
Query: 249 IAAQEGHVGLLE-------LLLDKGADILREDGEGLTALSWACMRGRIQAVTYLLDRDRG 301
V E + G +L +D GLTAL + + A+ + D
Sbjct: 120 KNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMME--DYI 177
Query: 302 AMIEHVDIN 310
+ +
Sbjct: 178 KKYNLKENS 186
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP:
k.37.1.1
Length = 126
Score = 107 bits (270), Expect = 7e-29
Identities = 53/141 (37%), Positives = 77/141 (54%), Gaps = 17/141 (12%)
Query: 162 GRTPLSLAAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPLMLAVKEG 221
GRTPL LAA GH+E V+ L+ AGA + D GR +PL LA + G
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGR---------------TPLHLAARNG 46
Query: 222 HWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILREDGEGLTALS 281
H + LL+ A ++ D + +TPL +AA+ GH+ +++LLL+ GAD+ +D G T L
Sbjct: 47 HLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLH 106
Query: 282 WACMRGRIQAVTYLLDRDRGA 302
A G ++ V LL + GA
Sbjct: 107 LAARNGHLEVVKLLL--EAGA 125
Score = 99.0 bits (248), Expect = 1e-25
Identities = 45/123 (36%), Positives = 68/123 (55%), Gaps = 2/123 (1%)
Query: 213 PLMLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILRE 272
PL LA + GH + LL+ A ++ D + +TPL +AA+ GH+ +++LLL+ GAD+ +
Sbjct: 5 PLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAK 64
Query: 273 DGEGLTALSWACMRGRIQAVTYLLDRDRGAMIEHVDINGLRPLDRAISCRNVPVVQCFLR 332
D G T L A G ++ V LL + GA + D NG PL A ++ VV+ L
Sbjct: 65 DKNGRTPLHLAARNGHLEVVKLLL--EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLE 122
Query: 333 KGA 335
GA
Sbjct: 123 AGA 125
Score = 93.9 bits (235), Expect = 7e-24
Identities = 51/136 (37%), Positives = 76/136 (55%), Gaps = 15/136 (11%)
Query: 132 ALCLFAHEGNSEMIALLLEFHACIDLANSQGRTPLSLAAGRGHMEAVRTLVAAGASLGRT 191
L L A G+ E++ LLLE A ++ + GRTPL LAA GH+E V+ L+ AGA +
Sbjct: 5 PLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAK 64
Query: 192 DTTGRCALVHAARGGHLQNLSPLMLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAA 251
D GR +PL LA + GH + LL+ A ++ D + +TPL +AA
Sbjct: 65 DKNGR---------------TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAA 109
Query: 252 QEGHVGLLELLLDKGA 267
+ GH+ +++LLL+ GA
Sbjct: 110 RNGHLEVVKLLLEAGA 125
Score = 76.2 bits (189), Expect = 3e-17
Identities = 36/96 (37%), Positives = 54/96 (56%), Gaps = 4/96 (4%)
Query: 240 DGSHKTPLMIAAQEGHVGLLELLLDKGADILREDGEGLTALSWACMRGRIQAVTYLLDRD 299
+G +TPL +AA+ GH+ +++LLL+ GAD+ +D G T L A G ++ V LL +
Sbjct: 1 NG--RTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL--E 56
Query: 300 RGAMIEHVDINGLRPLDRAISCRNVPVVQCFLRKGA 335
GA + D NG PL A ++ VV+ L GA
Sbjct: 57 AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
>1awc_B Protein (GA binding protein beta 1); complex (transcription
regulation/DNA), DNA-binding, nuclear protein, ETS
domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus
musculus} SCOP: d.211.1.1
Length = 153
Score = 104 bits (263), Expect = 2e-27
Identities = 53/171 (30%), Positives = 74/171 (43%), Gaps = 19/171 (11%)
Query: 162 GRTPLSLAAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPLMLAVKEG 221
L AA G + VR L+A GA TD G SPL LA + G
Sbjct: 2 LGKKLLEAARAGQDDEVRILMANGAPF-TTDWLGT---------------SPLHLAAQYG 45
Query: 222 HWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILREDGEGLTALS 281
H++T E LL+ D +TPL +AA EGH ++E+LL GAD+ +D +TAL
Sbjct: 46 HFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALH 105
Query: 282 WACMRGRIQAVTYLLDRDRGAMIEHVDINGLRPLDRAISCRNVPVVQCFLR 332
WA + V L+ GA + D +I N + + L+
Sbjct: 106 WATEHNHQEVVELLI--KYGADVHTQSKFCKTAFDISIDNGNEDLAE-ILQ 153
Score = 87.4 bits (218), Expect = 4e-21
Identities = 35/123 (28%), Positives = 49/123 (39%), Gaps = 3/123 (2%)
Query: 213 PLMLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILRE 272
L+ A + G L+ + AP TD +PL +AAQ GH E+LL G
Sbjct: 5 KLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDAR 63
Query: 273 DGEGLTALSWACMRGRIQAVTYLLDRDRGAMIEHVDINGLRPLDRAISCRNVPVVQCFLR 332
T L A G V LL GA + D+ + L A + VV+ ++
Sbjct: 64 TKVDRTPLHMAASEGHANIVEVLLKH--GADVNAKDMLKMTALHWATEHNHQEVVELLIK 121
Query: 333 KGA 335
GA
Sbjct: 122 YGA 124
Score = 82.4 bits (205), Expect = 3e-19
Identities = 41/157 (26%), Positives = 61/157 (38%), Gaps = 18/157 (11%)
Query: 106 NVKVSRLLLLSGADANHITEFLGAAPALCLFAHEGNSEMIALLLEFHACIDLANSQGRTP 165
R+L+ +GA T++LG +P L L A G+ +LL D RTP
Sbjct: 14 QDDEVRILMANGAPFT--TDWLGTSP-LHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTP 70
Query: 166 LSLAAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPLMLAVKEGHWAT 225
L +AA GH V L+ GA + D + L A + H
Sbjct: 71 LHMAASEGHANIVEVLLKHGADVNAKDMLKM---------------TALHWATEHNHQEV 115
Query: 226 AEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELL 262
E L+++ A + KT I+ G+ L E+L
Sbjct: 116 VELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152
Score = 32.7 bits (76), Expect = 0.066
Identities = 15/61 (24%), Positives = 20/61 (32%), Gaps = 3/61 (4%)
Query: 275 EGLTALSWACMRGRIQAVTYLLDRDRGAMIEHVDINGLRPLDRAISCRNVPVVQCFLRKG 334
+ L A G+ V L+ GA D G PL A + + LR G
Sbjct: 1 DLGKKLLEAARAGQDDEVRILM--ANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAG 57
Query: 335 A 335
Sbjct: 58 V 58
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor,
cytoplasm, phosphorylation, P53 binding protein, ANK
repeat, SH3 domain; 2.10A {Homo sapiens}
Length = 229
Score = 106 bits (267), Expect = 3e-27
Identities = 37/213 (17%), Positives = 60/213 (28%), Gaps = 24/213 (11%)
Query: 111 RLLLLSGADANHITEFLGAAP--ALCLFAHEGNSEMIALLLEFHACIDLANSQGRTPLSL 168
R +L P L A G E++ ++ N +G T L
Sbjct: 2 RSVLRKAGSPRKARRA-RLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHN 60
Query: 169 AAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPLMLAVKEGHWATAEK 228
A + V L+ AGA++ D+ G +PL A
Sbjct: 61 AICGANYSIVDFLITAGANVNSPDSHGW---------------TPLHCAASCNDTVICMA 105
Query: 229 LLQHHAPLDQTDGSH-KTPLMIAA--QEGHVGLLELLLDKGADILREDGEGLTALSWACM 285
L+QH A + T S T +EG+ L D + + + AL
Sbjct: 106 LVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYS- 164
Query: 286 RGRIQAVTYLLDRDRGAMIEHVDINGLRPLDRA 318
+++ + D A
Sbjct: 165 AEFGDELSFRE--GESVTVLRRDGPEETDWWWA 195
Score = 91.9 bits (229), Expect = 6e-22
Identities = 28/164 (17%), Positives = 51/164 (31%), Gaps = 17/164 (10%)
Query: 178 VRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPLMLAVKEGHWATAEKLLQHHAPLD 237
+R+++ S AR L L L+ A G ++ ++
Sbjct: 1 MRSVLRKAGS------------PRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPS 48
Query: 238 QTDGSHKTPLMIAAQEGHVGLLELLLDKGADILREDGEGLTALSWACMRGRIQAVTYLLD 297
Q + T L A + +++ L+ GA++ D G T L A L+
Sbjct: 49 QPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALV- 107
Query: 298 RDRGAMIEHVDIN-GLRPLDRAISCRN--VPVVQCFLRKGAKLG 338
GA I ++ G ++ R +G
Sbjct: 108 -QHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMG 150
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping,
inhibition, prote binding, actin capping, actin-binding,
cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A
2kxp_C 2myo_A
Length = 123
Score = 102 bits (257), Expect = 5e-27
Identities = 40/129 (31%), Positives = 52/129 (40%), Gaps = 15/129 (11%)
Query: 159 NSQGRTPLSLAAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPLMLAV 218
S A G ++ V+ VA G + RT GR PL A
Sbjct: 4 GSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGR---------------KPLHYAA 48
Query: 219 KEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILREDGEGLT 278
G E LL A ++ D H TPL+ A EGHV ++LLL KGAD + +GLT
Sbjct: 49 DCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLT 108
Query: 279 ALSWACMRG 287
A +
Sbjct: 109 AFEATDNQA 117
Score = 94.4 bits (236), Expect = 4e-24
Identities = 31/106 (29%), Positives = 45/106 (42%), Gaps = 2/106 (1%)
Query: 213 PLMLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILRE 272
M A+K G + + +++T + PL AA G + +LE LL KGADI
Sbjct: 10 EFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAP 69
Query: 273 DGEGLTALSWACMRGRIQAVTYLLDRDRGAMIEHVDINGLRPLDRA 318
D +T L A G + V LL +GA +GL +
Sbjct: 70 DKHHITPLLSAVYEGHVSCVKLLL--SKGADKTVKGPDGLTAFEAT 113
Score = 81.3 bits (202), Expect = 3e-19
Identities = 26/129 (20%), Positives = 42/129 (32%), Gaps = 15/129 (11%)
Query: 132 ALCLFAHEGNSEMIALLLEFHACIDLANSQGRTPLSLAAGRGHMEAVRTLVAAGASLGRT 191
G+ + + + ++ GR PL AA G +E + L+ GA +
Sbjct: 10 EFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAP 69
Query: 192 DTTGRCALVHAARGGHLQNLSPLMLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAA 251
D +PL+ AV EGH + + LL A T
Sbjct: 70 DKHHI---------------TPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATD 114
Query: 252 QEGHVGLLE 260
+ LL+
Sbjct: 115 NQAIKALLQ 123
Score = 77.8 bits (193), Expect = 6e-18
Identities = 26/91 (28%), Positives = 44/91 (48%), Gaps = 2/91 (2%)
Query: 245 TPLMIAAQEGHVGLLELLLDKGADILREDGEGLTALSWACMRGRIQAVTYLLDRDRGAMI 304
M A + G + ++ + KG D+ R G L +A G+++ + +LL +GA I
Sbjct: 9 KEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLL--LKGADI 66
Query: 305 EHVDINGLRPLDRAISCRNVPVVQCFLRKGA 335
D + + PL A+ +V V+ L KGA
Sbjct: 67 NAPDKHHITPLLSAVYEGHVSCVKLLLSKGA 97
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat,
helix, extended loop, four repeat, PR ANK repeat,
disease mutation, metal-binding; 2.00A {Homo sapiens}
SCOP: k.37.1.1
Length = 137
Score = 101 bits (255), Expect = 2e-26
Identities = 34/123 (27%), Positives = 54/123 (43%), Gaps = 2/123 (1%)
Query: 213 PLMLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILRE 272
L +A +G + E LLQ+ + + D + TPL A GH+ ++ELLL A +
Sbjct: 13 LLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTT 72
Query: 273 DGEGLTALSWACMRGRIQAVTYLLDRDRGAMIEHVDINGLRPLDRAISCRNVPVVQCFLR 332
+ + L A G + V LL GA V+I GLRP+D ++ +
Sbjct: 73 GYQNDSPLHDAAKNGHVDIVKLLL--SYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEK 130
Query: 333 KGA 335
+
Sbjct: 131 NES 133
Score = 88.6 bits (221), Expect = 1e-21
Identities = 29/132 (21%), Positives = 48/132 (36%), Gaps = 15/132 (11%)
Query: 137 AHEGNSEMIALLLEFHACIDLANSQGRTPLSLAAGRGHMEAVRTLVAAGASLGRTDTTGR 196
+ +G+ + LL+ + ++ + G TPL A GH++ V L+ A + T
Sbjct: 18 SIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQND 77
Query: 197 CALVHAARGGHLQNLSPLMLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHV 256
SPL A K GH + LL + A + + P+ E
Sbjct: 78 ---------------SPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMK 122
Query: 257 GLLELLLDKGAD 268
LL L +
Sbjct: 123 SLLLLPEKNESS 134
Score = 78.6 bits (195), Expect = 4e-18
Identities = 30/97 (30%), Positives = 45/97 (46%), Gaps = 2/97 (2%)
Query: 239 TDGSHKTPLMIAAQEGHVGLLELLLDKGADILREDGEGLTALSWACMRGRIQAVTYLLDR 298
T+ +T L IA+ +G + +E LL G+D +D G T L AC G ++ V LL
Sbjct: 6 TNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLL-- 63
Query: 299 DRGAMIEHVDINGLRPLDRAISCRNVPVVQCFLRKGA 335
A++ PL A +V +V+ L GA
Sbjct: 64 QHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGA 100
Score = 65.5 bits (161), Expect = 2e-13
Identities = 28/130 (21%), Positives = 52/130 (40%), Gaps = 17/130 (13%)
Query: 106 NVKVSRLLLLSGADANHITEFLGAAPALCLFAHEGNSEMIALLLEFHACIDLANSQGRTP 165
++ LL +G+D N G P L + G+ +++ LLL+ A ++ Q +P
Sbjct: 22 DIPSVEYLLQNGSDPNVKDHA-GWTP-LHEACNHGHLKVVELLLQHKALVNTTGYQNDSP 79
Query: 166 LSLAAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPLMLAVKEGHWAT 225
L AA GH++ V+ L++ GAS + G P+ E +
Sbjct: 80 LHDAAKNGHVDIVKLLLSYGASRNAVNIFGL---------------RPVDYTDDESMKSL 124
Query: 226 AEKLLQHHAP 235
++ +
Sbjct: 125 LLLPEKNESS 134
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate
recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo
sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A
3twq_A 3twu_A 2y0i_S*
Length = 165
Score = 102 bits (257), Expect = 2e-26
Identities = 46/173 (26%), Positives = 66/173 (38%), Gaps = 19/173 (10%)
Query: 132 ALCLFAHEGNSEMIALLLEFHAC-IDLANSQGRTPLSLAAGRGHMEAVRTLVAAGASLGR 190
L A G+ E + L + + TPL AAG + V L+ GA +
Sbjct: 11 QLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHA 70
Query: 191 TDTTGRCALVHAARGGHLQNLSPLMLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIA 250
D G PL A GH+ AE L++H A ++ D TPL A
Sbjct: 71 KDKGGL---------------VPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEA 115
Query: 251 AQEGHVGLLELLLDKGADILREDGEGLTALSWACMRGRIQAVTYLLDRDRGAM 303
A +G + +LLL GAD +++ +G T L G L A+
Sbjct: 116 AAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVK-DGDTDIQDLLR--GDAAL 165
Score = 101 bits (255), Expect = 3e-26
Identities = 43/178 (24%), Positives = 61/178 (34%), Gaps = 19/178 (10%)
Query: 159 NSQGRTPLSLAAGRGHMEAVRTLVAA-GASLGRTDTTGRCALVHAARGGHLQNLSPLMLA 217
NS+ L AA G +E V+ L + + +PL A
Sbjct: 5 NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQS---------------TPLHFA 49
Query: 218 VKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILREDGEGL 277
+ E LLQH A + D PL A GH + ELL+ GA + D
Sbjct: 50 AGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKF 109
Query: 278 TALSWACMRGRIQAVTYLLDRDRGAMIEHVDINGLRPLDRAISCRNVPVVQCFLRKGA 335
T L A +G+ + LL GA + +G PLD + + A
Sbjct: 110 TPLHEAAAKGKYEICKLLL--QHGADPTKKNRDGNTPLDLV-KDGDTDIQDLLRGDAA 164
Score = 78.2 bits (194), Expect = 1e-17
Identities = 35/157 (22%), Positives = 54/157 (34%), Gaps = 20/157 (12%)
Query: 113 LLLS--GADANHITEFLGAAPALCLFAHEGNSEMIALLLEFHACIDLANSQGRTPLSLAA 170
L + + I + L A ++ LL+ A + + G PL A
Sbjct: 26 KLCTVQSVNCRDIEGR--QSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNAC 83
Query: 171 GRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPLMLAVKEGHWATAEKLL 230
GH E LV GA + D +PL A +G + + LL
Sbjct: 84 SYGHYEVAELLVKHGAVVNVADLWKF---------------TPLHEAAAKGKYEICKLLL 128
Query: 231 QHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGA 267
QH A + + TPL + +G + +LL A
Sbjct: 129 QHGADPTKKNRDGNTPLDLVK-DGDTDIQDLLRGDAA 164
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6,
ankyrin reapeat, ANK RE calcium channel, calcium
transport, calmodulin-binding; 1.70A {Mus musculus}
Length = 232
Score = 100 bits (252), Expect = 4e-25
Identities = 48/226 (21%), Positives = 77/226 (34%), Gaps = 32/226 (14%)
Query: 132 ALCLFAHEGNSEMIALLLEFHAC-IDLANSQGRTPLSLAAGRGHMEAVRTLVAAGASLGR 190
L L A E + + ++ LL+F C + + G T L +AA ++EA L+ A L
Sbjct: 6 PLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVF 65
Query: 191 TDTTGRCALVHAARGGHLQNLSPLMLAVKEGHWATAEKLLQH-------------HAPLD 237
T G + L +AV + LL H
Sbjct: 66 EPMTSEL------YEGQ----TALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPH 115
Query: 238 QTDGSHKTPLMIAAQEGHVGLLELLLDKGADILREDGEGLTALSWACMRGRIQAVTYLLD 297
+ PL AA G ++ LL++ GADI +D G T L ++ + +
Sbjct: 116 NLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYN 175
Query: 298 R--DRGAMI------EHVDINGLRPLDRAISCRNVPVVQCFLRKGA 335
+ GL P A N+ + Q ++K
Sbjct: 176 LLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQKRK 221
Score = 85.3 bits (212), Expect = 1e-19
Identities = 36/189 (19%), Positives = 60/189 (31%), Gaps = 39/189 (20%)
Query: 106 NVKVSRLLLLSGADANHITEFLGAAP------ALCLFAHEGNSEMIALLLE--------- 150
N++ + +L+ + + + + AL + N ++ LL
Sbjct: 49 NLEAAMVLMEAAPE---LVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARA 105
Query: 151 ----FHACIDLANSQGRTPLSLAAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGG 206
FH G PLS AA G E VR L+ GA + D+ G L
Sbjct: 106 TGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQP 165
Query: 207 HLQNLSPLMLAVKEGHWATAEKLLQHHA------PLDQTDGSHKTPLMIAAQEGHVGLLE 260
+ K LL + + TP +A EG++ + +
Sbjct: 166 N-----------KTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQ 214
Query: 261 LLLDKGADI 269
L+ K I
Sbjct: 215 HLMQKRKHI 223
Score = 84.2 bits (209), Expect = 4e-19
Identities = 39/185 (21%), Positives = 60/185 (32%), Gaps = 36/185 (19%)
Query: 162 GRTPLSLAAGRGHMEAVRT-LVAAGASLGRTDTTGRCALVHAARGGHLQNLSPLMLAVKE 220
+PL LAA ++A+ L G + + G + L +A
Sbjct: 3 WESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGE---------------TALHIAALY 47
Query: 221 GHWATAEKLLQHHA-----PLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADI------ 269
+ A L++ P+ +T L IA +V L+ LL +GA +
Sbjct: 48 DNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATG 107
Query: 270 -------LREDGEGLTALSWACMRGRIQAVTYLLDRDRGAMIEHVDINGLRPLDRAISCR 322
G LS+A G + V L+ + GA I D G L I
Sbjct: 108 SVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLI--EHGADIRAQDSLGNTVLHILILQP 165
Query: 323 NVPVV 327
N
Sbjct: 166 NKTFA 170
Score = 66.9 bits (164), Expect = 4e-13
Identities = 26/98 (26%), Positives = 47/98 (47%), Gaps = 8/98 (8%)
Query: 244 KTPLMIAAQEGHVG-LLELLLDKGADILREDGEGLTALSWACMRGRIQAVTYLLDRDRGA 302
++PL++AA+E V L +LL +G ++ + G TAL A + ++A L+ +
Sbjct: 4 ESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLM--EAAP 61
Query: 303 MIEHV-----DINGLRPLDRAISCRNVPVVQCFLRKGA 335
+ G L A+ +NV +V+ L +GA
Sbjct: 62 ELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGA 99
Score = 35.7 bits (83), Expect = 0.012
Identities = 12/66 (18%), Positives = 20/66 (30%), Gaps = 1/66 (1%)
Query: 276 GLTALSWACMRGRIQAVTYLLDRDRGAMIEHVDINGLRPLDRAISCRNVPVVQCFLRKGA 335
+ L A +QA++ LL G + G L A N+ +
Sbjct: 3 WESPLLLAAKENDVQALSKLLK-FEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAP 61
Query: 336 KLGPTT 341
+L
Sbjct: 62 ELVFEP 67
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1,
ankyrin repeat domain, transport protein; HET: ATP;
2.70A {Rattus norvegicus} PDB: 2nyj_A*
Length = 273
Score = 101 bits (253), Expect = 6e-25
Identities = 50/214 (23%), Positives = 73/214 (34%), Gaps = 40/214 (18%)
Query: 135 LFAHEGNSEMIALLLEFHACIDLA-----------NSQGRTPLSLAAGRGHMEAVRTLVA 183
L H G ++ IALLL+ D +G+T L +A R +M V LV
Sbjct: 63 LNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVE 122
Query: 184 AGASLGRTDTTGRCALVHAARGGHLQNLSPLMLAVKEGHWATAEKLLQH---HAPLDQTD 240
GA + G R G PL LA A + LLQ+ A + D
Sbjct: 123 NGADVQAAAN-GDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARD 181
Query: 241 GSHKTPLMIAAQEGH---------VGLLELLLDKGADILRE-------DGEGLTALSWAC 284
T L + + +L GA + + +GLT L+ A
Sbjct: 182 SVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAA 241
Query: 285 MRGRIQAVTYLLDRDRGAMIEHVDINGLRPLDRA 318
G+I + Y+L R +I+ A
Sbjct: 242 SSGKIGVLAYILQR---------EIHEPECRHAA 266
Score = 95.2 bits (237), Expect = 9e-23
Identities = 39/214 (18%), Positives = 69/214 (32%), Gaps = 34/214 (15%)
Query: 101 NVYSPNVKVSRLLLLSGADANHITEFLGAAP---------ALCLFAHEGNSEMIALLLEF 151
N+++ LLL + + +F+ A+ AL + N ++ LL+E
Sbjct: 64 NLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVEN 123
Query: 152 HACID--------------LANSQGRTPLSLAAGRGHMEAVRTLVAAG---ASLGRTDTT 194
A + G PLSLAA + V+ L+ A + D+
Sbjct: 124 GADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSV 183
Query: 195 GRCALVHAARGGHLQ-NLSPLMLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQE 253
G L + + + ++ KL + T+ TPL +AA
Sbjct: 184 GNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASS 243
Query: 254 GHVGLLELLLDKGADILREDGEGLTALSWACMRG 287
G +G+L +L + A
Sbjct: 244 GKIGVLAYILQREIH-------EPECRHAAAHHH 270
Score = 94.8 bits (236), Expect = 1e-22
Identities = 41/252 (16%), Positives = 73/252 (28%), Gaps = 47/252 (18%)
Query: 137 AHEGNSEMIALLLEF-------HACIDL-ANSQGRTPLSLA---AGRGHMEAVRTLVAAG 185
+ N + + LL F + G+T L A G + + L+
Sbjct: 21 VAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVA 80
Query: 186 ASLGRTDTTGRCALVHAARGGHLQNLSPLMLAVKEGHWATAEKLLQHHAPLDQTDGSH-- 243
+ + G + L +A++ + L+++ A +
Sbjct: 81 RKTDSLKQFVNASYTDSYYKGQ----TALHIAIERRNMTLVTLLVENGADVQAAANGDFF 136
Query: 244 ------------KTPLMIAAQEGHVGLLELLLDKG---ADILREDGEGLTALSWACMRGR 288
+ PL +AA + +++ LL ADI D G T L
Sbjct: 137 KKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVAD 196
Query: 289 ---------IQAVTYLLDRD-----RGAMIEHVDINGLRPLDRAISCRNVPVVQCFLRKG 334
+L + E + GL PL A S + V+ L++
Sbjct: 197 NTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQRE 256
Query: 335 AKLGPTTWSMAA 346
P AA
Sbjct: 257 IH-EPECRHAAA 267
Score = 78.3 bits (193), Expect = 8e-17
Identities = 34/196 (17%), Positives = 59/196 (30%), Gaps = 36/196 (18%)
Query: 162 GRTPLSLAAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPLMLAV--- 218
R + A + + + + +L+ + R + L+ A+
Sbjct: 13 DRRSIFDAVAQSNCQELESLLPFLQRSKK-----RLTDSEFKDPE--TGKTCLLKAMLNL 65
Query: 219 KEGHWATAEKLLQHHAPLDQT-----------DGSHKTPLMIAAQEGHVGLLELLLDKGA 267
G T LL D +T L IA + ++ L+ LL++ GA
Sbjct: 66 HNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGA 125
Query: 268 DI--------------LREDGEGLTALSWACMRGRIQAVTYLLDR-DRGAMIEHVDINGL 312
D+ G LS A ++ V +LL + A I D G
Sbjct: 126 DVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGN 185
Query: 313 RPLDRAISCRNVPVVQ 328
L + + V
Sbjct: 186 TVLHALVEVADNTVDN 201
Score = 63.3 bits (154), Expect = 1e-11
Identities = 32/183 (17%), Positives = 53/183 (28%), Gaps = 39/183 (21%)
Query: 183 AAGASLGRTDTTGRCALVHAARGGHLQNLSPLMLAVKEGHWATAEKLLQHHAPLDQTDGS 242
+ A R ++ A + Q L E ++ + + D
Sbjct: 1 SVSAGEKPPRLYDRRSIFDAVAQSNCQEL--------ESLLPFLQRSKKRLTDSEFKDPE 52
Query: 243 H-KTPLMIA---AQEGHVGLLELLLDKGADI-----------LREDGEGLTALSWACMRG 287
KT L+ A G + LLLD +G TAL A R
Sbjct: 53 TGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERR 112
Query: 288 RIQAVTYLLDRDRGAMIEHVDINGLR--------------PLDRAISCRNVPVVQCFLRK 333
+ VT L+ + GA ++ PL A + +V+ L+
Sbjct: 113 NMTLVTLLV--ENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQN 170
Query: 334 GAK 336
+
Sbjct: 171 SWQ 173
Score = 29.0 bits (65), Expect = 2.0
Identities = 13/82 (15%), Positives = 21/82 (25%), Gaps = 9/82 (10%)
Query: 266 GADILREDGEGLTALSWACMRGRIQAVTYLLD-----RDRGAMIEHVDI-NGLRPLDRA- 318
A ++ A + Q + LL + R E D G L +A
Sbjct: 3 SAGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAM 62
Query: 319 --ISCRNVPVVQCFLRKGAKLG 338
+ + L K
Sbjct: 63 LNLHNGQNDTIALLLDVARKTD 84
>2etb_A Transient receptor potential cation channel subfamily V member 2;
TRPV2, ankyrin repeat domain, transport protein; 1.65A
{Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Length = 256
Score = 98.3 bits (245), Expect = 5e-24
Identities = 36/195 (18%), Positives = 63/195 (32%), Gaps = 32/195 (16%)
Query: 135 LFAHEGNSEMIALLLEF-----------HACIDLANSQGRTPLSLAAGRGHMEAVRTLVA 183
L +G + I LL+ +A QG + L +A + ++ V+ LV
Sbjct: 52 LNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVE 111
Query: 184 AGASLGRTDTTGRCALVHAARGGHLQNLSPLMLAVKEGHWATAEKLLQ------------ 231
GA + + PL LA W LL+
Sbjct: 112 NGADVHLRACGRFFQKHQGTCFYFGE--LPLSLAACTKQWDVVTYLLENPHQPASLEATD 169
Query: 232 -------HHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILREDGEGLTALSWAC 284
H + + + L+I +G + + L + +GLT L A
Sbjct: 170 SLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAA 229
Query: 285 MRGRIQAVTYLLDRD 299
G+I+ ++L R+
Sbjct: 230 KEGKIEIFRHILQRE 244
Score = 96.0 bits (239), Expect = 4e-23
Identities = 40/195 (20%), Positives = 68/195 (34%), Gaps = 26/195 (13%)
Query: 101 NVYSPNVKVSRLLLLSGADANHITEFLGA---------APALCLFAHEGNSEMIALLLEF 151
N+ LL D+ + + A AL + + + + + LL+E
Sbjct: 53 NLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVEN 112
Query: 152 HACIDLANS-------------QGRTPLSLAAGRGHMEAVRTLVAAG---ASLGRTDTTG 195
A + L G PLSLAA + V L+ ASL TD+ G
Sbjct: 113 GADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLG 172
Query: 196 RCALVHAARGGH-LQNLSPLMLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEG 254
L S L++ + +G +L + ++ TPL +AA+EG
Sbjct: 173 NTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEG 232
Query: 255 HVGLLELLLDKGADI 269
+ + +L +
Sbjct: 233 KIEIFRHILQREFSG 247
Score = 93.7 bits (233), Expect = 2e-22
Identities = 41/243 (16%), Positives = 69/243 (28%), Gaps = 49/243 (20%)
Query: 137 AHEGNSEMIALLLEFH--------ACIDLANSQGRTPLSLAA---GRGHMEAVRTLVAAG 185
G E + LLE+ S G+T L A G + L+
Sbjct: 10 VSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQID 69
Query: 186 ASLGRTDTTGRCALVHAARGGHLQNLSPLMLAVKEGHWATAEKLLQHHAPLDQTDGSH-- 243
G GH S L +A+++ + L+++ A +
Sbjct: 70 KDSGNPKPLVNAQCTDEFYQGH----SALHIAIEKRSLQCVKLLVENGADVHLRACGRFF 125
Query: 244 -----------KTPLMIAAQEGHVGLLELLLDKG---ADILREDGEGLTAL--------- 280
+ PL +AA ++ LL+ A + D G T L
Sbjct: 126 QKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADN 185
Query: 281 -------SWACMRGRIQAVTYLLDRDRGAMIEHVDINGLRPLDRAISCRNVPVVQCFLRK 333
G +Q L + E + GL PL A + + + L++
Sbjct: 186 SPENSALVIHMYDGLLQMGARLC--PTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQR 243
Query: 334 GAK 336
Sbjct: 244 EFS 246
Score = 67.1 bits (164), Expect = 6e-13
Identities = 35/179 (19%), Positives = 53/179 (29%), Gaps = 54/179 (30%)
Query: 195 GRCALVHAARGGHLQNLS--------------------------PLMLAV---KEGHWAT 225
R L G + L+ LM AV ++G A
Sbjct: 2 DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNAC 61
Query: 226 AEKLLQHHA-----------PLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADI----- 269
LLQ + L IA ++ + ++LL++ GAD+
Sbjct: 62 IMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRAC 121
Query: 270 --------LREDGEGLTALSWACMRGRIQAVTYLLDR-DRGAMIEHVDINGLRPLDRAI 319
G LS A + VTYLL+ + A +E D G L +
Sbjct: 122 GRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALV 180
Score = 51.3 bits (123), Expect = 1e-07
Identities = 23/112 (20%), Positives = 32/112 (28%), Gaps = 20/112 (17%)
Query: 244 KTPLMIAAQEGHVGLLELLLDK--------GADILREDGEGLTALSWACMR---GRIQAV 292
+ L G L LL+ E G T L A + G +
Sbjct: 3 RDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACI 62
Query: 293 TYLLDRDR---------GAMIEHVDINGLRPLDRAISCRNVPVVQCFLRKGA 335
LL D+ A G L AI R++ V+ + GA
Sbjct: 63 MPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGA 114
Score = 29.0 bits (65), Expect = 2.2
Identities = 11/57 (19%), Positives = 19/57 (33%), Gaps = 2/57 (3%)
Query: 106 NVKVSRLLLLSGADANHITEFLGAAPALCLFAHEGNSEMIALLLEFHACIDLANSQG 162
+++ L + G P L L A EG E+ +L+ A+
Sbjct: 200 LLQMGARLCPTVQLEEISNHQ-GLTP-LKLAAKEGKIEIFRHILQREFSGAAAHHHH 254
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo
protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Length = 110
Score = 93.0 bits (232), Expect = 1e-23
Identities = 30/127 (23%), Positives = 49/127 (38%), Gaps = 18/127 (14%)
Query: 169 AAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPLMLAVKEGHWATAEK 228
+ H LV G+ +G L+ A + G
Sbjct: 1 GSSHHHHHHSSGLVPRGSHMGSDLGK------------------KLLEAARAGQDDEVRI 42
Query: 229 LLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILREDGEGLTALSWACMRGR 288
L+ + A + D + TPL +AA+ GH+ +++LLL+ GAD+ +D G TA + G
Sbjct: 43 LMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGN 102
Query: 289 IQAVTYL 295
L
Sbjct: 103 EDLAEIL 109
Score = 80.3 bits (199), Expect = 5e-19
Identities = 27/114 (23%), Positives = 46/114 (40%), Gaps = 5/114 (4%)
Query: 217 AVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILREDGEG 276
H + L+ + + +D L+ AA+ G + +L+ GAD+ +D G
Sbjct: 1 GSSHHHHHHSSGLVPRGSHMG-SDL--GKKLLEAARAGQDDEVRILMANGADVAAKDKNG 57
Query: 277 LTALSWACMRGRIQAVTYLLDRDRGAMIEHVDINGLRPLDRAISCRNVPVVQCF 330
T L A G ++ V LL + GA + D G D +I N + +
Sbjct: 58 STPLHLAARNGHLEVVKLLL--EAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109
Score = 64.5 bits (158), Expect = 3e-13
Identities = 27/106 (25%), Positives = 45/106 (42%), Gaps = 9/106 (8%)
Query: 106 NVKVSRLLLLSGAD--ANHITEFLGAAPALCLFAHEGNSEMIALLLEFHACIDLANSQGR 163
+ S L+ G+ ++ L A G + + +L+ A + + G
Sbjct: 6 HHHHSSGLVPRGSHMGSDLGK-------KLLEAARAGQDDEVRILMANGADVAAKDKNGS 58
Query: 164 TPLSLAAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQ 209
TPL LAA GH+E V+ L+ AGA + D G+ A + G+
Sbjct: 59 TPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNED 104
Score = 63.7 bits (156), Expect = 5e-13
Identities = 21/86 (24%), Positives = 33/86 (38%), Gaps = 5/86 (5%)
Query: 250 AAQEGHVGLLELLLDKGADILREDGEGLTALSWACMRGRIQAVTYLLDRDRGAMIEHVDI 309
+ H L+ +G+ + + L A G+ V L+ GA + D
Sbjct: 1 GSSHHHHHHSSGLVPRGSHM---GSDLGKKLLEAARAGQDDEVRILMAN--GADVAAKDK 55
Query: 310 NGLRPLDRAISCRNVPVVQCFLRKGA 335
NG PL A ++ VV+ L GA
Sbjct: 56 NGSTPLHLAARNGHLEVVKLLLEAGA 81
Score = 39.1 bits (92), Expect = 2e-04
Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Query: 109 VSRLLLLSGADANHITEFLGAAPALCLFAHEGNSEMIALLLEFHACIDLANSQGRTPLSL 168
R+L+ +GAD + G+ P L L A G+ E++ LLLE A + + G+T +
Sbjct: 39 EVRILMANGADVAAKDKN-GSTP-LHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDI 96
Query: 169 AAGRGHMEAVRTL 181
+ G+ + L
Sbjct: 97 SIDNGNEDLAEIL 109
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR
{Escherichia coli}
Length = 115
Score = 92.4 bits (231), Expect = 2e-23
Identities = 35/126 (27%), Positives = 50/126 (39%), Gaps = 15/126 (11%)
Query: 155 IDLANSQGRTPLSLAAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPL 214
+ G TPL AA GH E V+ L++ GA + G +PL
Sbjct: 2 HMWGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGN---------------TPL 46
Query: 215 MLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILREDG 274
LA K GH + LL A ++ TP +A + GH +++LL KGAD+
Sbjct: 47 HLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSW 106
Query: 275 EGLTAL 280
Sbjct: 107 GSSHHH 112
Score = 87.0 bits (217), Expect = 2e-21
Identities = 32/103 (31%), Positives = 45/103 (43%), Gaps = 2/103 (1%)
Query: 213 PLMLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILRE 272
PL A K GH +KLL A ++ TPL +AA+ GH +++LLL KGAD+
Sbjct: 12 PLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNAR 71
Query: 273 DGEGLTALSWACMRGRIQAVTYLLDRDRGAMIEHVDINGLRPL 315
+G T A G + V L +GA +
Sbjct: 72 SKDGNTPEHLAKKNGHHEIVKLLD--AKGADVNARSWGSSHHH 112
Score = 75.9 bits (188), Expect = 2e-17
Identities = 32/96 (33%), Positives = 44/96 (45%), Gaps = 4/96 (4%)
Query: 240 DGSHKTPLMIAAQEGHVGLLELLLDKGADILREDGEGLTALSWACMRGRIQAVTYLLDRD 299
DG TPL AA+ GH ++ LL KGAD+ +G T L A G + V LL
Sbjct: 8 DG--NTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLL--A 63
Query: 300 RGAMIEHVDINGLRPLDRAISCRNVPVVQCFLRKGA 335
+GA + +G P A + +V+ KGA
Sbjct: 64 KGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGA 99
Score = 43.5 bits (104), Expect = 7e-06
Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 4/70 (5%)
Query: 266 GADILREDGEGLTALSWACMRGRIQAVTYLLDRDRGAMIEHVDINGLRPLDRAISCRNVP 325
G +DG T L A G + V LL +GA + +G PL A +
Sbjct: 1 GHMWGSKDGN--TPLHNAAKNGHAEEVKKLL--SKGADVNARSKDGNTPLHLAAKNGHAE 56
Query: 326 VVQCFLRKGA 335
+V+ L KGA
Sbjct: 57 IVKLLLAKGA 66
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein,
human epidermal growth factor receptor 2, de novo
protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G
2v4h_C
Length = 136
Score = 90.1 bits (225), Expect = 2e-22
Identities = 42/135 (31%), Positives = 57/135 (42%), Gaps = 15/135 (11%)
Query: 162 GRTPLSLAAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPLMLAVKEG 221
L AA G + VR L+A GA + D G +PL LA G
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADVNAKDEYGL---------------TPLYLATAHG 58
Query: 222 HWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILREDGEGLTALS 281
H E LL++ A ++ D TPL +AA GH+ + E+LL GAD+ +D G TA
Sbjct: 59 HLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFD 118
Query: 282 WACMRGRIQAVTYLL 296
+ G L
Sbjct: 119 ISIGNGNEDLAEILQ 133
Score = 84.7 bits (211), Expect = 2e-20
Identities = 33/119 (27%), Positives = 51/119 (42%), Gaps = 2/119 (1%)
Query: 213 PLMLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILRE 272
L+ A + G L+ + A ++ D TPL +A GH+ ++E+LL GAD+
Sbjct: 17 KLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAV 76
Query: 273 DGEGLTALSWACMRGRIQAVTYLLDRDRGAMIEHVDINGLRPLDRAISCRNVPVVQCFL 331
D G T L A G ++ LL GA + D G D +I N + +
Sbjct: 77 DAIGFTPLHLAAFIGHLEIAEVLL--KHGADVNAQDKFGKTAFDISIGNGNEDLAEILQ 133
Score = 74.7 bits (185), Expect = 1e-16
Identities = 40/132 (30%), Positives = 57/132 (43%), Gaps = 15/132 (11%)
Query: 132 ALCLFAHEGNSEMIALLLEFHACIDLANSQGRTPLSLAAGRGHMEAVRTLVAAGASLGRT 191
L A G + + +L+ A ++ + G TPL LA GH+E V L+ GA +
Sbjct: 17 KLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAV 76
Query: 192 DTTGRCALVHAARGGHLQNLSPLMLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAA 251
D G +PL LA GH AE LL+H A ++ D KT I+
Sbjct: 77 DAIGF---------------TPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISI 121
Query: 252 QEGHVGLLELLL 263
G+ L E+L
Sbjct: 122 GNGNEDLAEILQ 133
Score = 69.7 bits (172), Expect = 8e-15
Identities = 31/110 (28%), Positives = 48/110 (43%), Gaps = 9/110 (8%)
Query: 226 AEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILREDGEGLTALSWACM 285
+ H + D L+ AA+ G + +L+ GAD+ +D GLT L A
Sbjct: 4 SHHHHHHGS-----DL--GKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATA 56
Query: 286 RGRIQAVTYLLDRDRGAMIEHVDINGLRPLDRAISCRNVPVVQCFLRKGA 335
G ++ V LL GA + VD G PL A ++ + + L+ GA
Sbjct: 57 HGHLEIVEVLL--KNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGA 104
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin
repeats, ANK repeat, ION transport, ionic channel, R
transmembrane, transport; 2.30A {Gallus gallus} PDB:
3jxj_A
Length = 260
Score = 89.1 bits (221), Expect = 1e-20
Identities = 44/227 (19%), Positives = 68/227 (29%), Gaps = 44/227 (19%)
Query: 112 LLLLSGADANHI---------TEFLGAAPALCLFAHEGNSEMIALLLEF----------- 151
LL T A L G ++ I +LL+
Sbjct: 27 FLLTHKKRLTDEEFREPSTGKTCLPKAL----LNLSAGRNDTIPILLDIAEKTGNMREFI 82
Query: 152 HACIDLANSQGRTPLSLAAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNL 211
++ +G+T L +A R V LV GA + GR G
Sbjct: 83 NSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQAR-GRFFQPKDEGGYFYFGE 141
Query: 212 SPLMLAVKEGHWATAEKLLQH---HAPLDQTDGSHKTPLMIAAQEGH---------VGLL 259
PL LA L ++ A L + D T L +
Sbjct: 142 LPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMY 201
Query: 260 ELLLDKGADI-------LREDGEGLTALSWACMRGRIQAVTYLLDRD 299
+LLL K A + + +GL+ L A G+I +++ R+
Sbjct: 202 DLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRRE 248
Score = 83.7 bits (207), Expect = 1e-18
Identities = 40/242 (16%), Positives = 71/242 (29%), Gaps = 46/242 (19%)
Query: 137 AHEGNSEMIALLLEF--------HACIDLANSQGRTPLSLAA---GRGHMEAVRTLVAAG 185
G+ + + LL F S G+T L A G + + L+
Sbjct: 13 VSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIA 72
Query: 186 ASLGRTDTTGRCALVHAARGGHLQNLSPLMLAVKEGHWATAEKLLQHHAPLDQTDGSH-- 243
G G + L +A++ E L++ A +
Sbjct: 73 EKTGNMREFINSPFRDVYYRGQ----TALHIAIERRCKHYVELLVEKGADVHAQARGRFF 128
Query: 244 ------------KTPLMIAAQEGHVGLLELLLDKG---ADILREDGEGLTALSWACMRG- 287
+ PL +AA ++ L + G AD+ R+D G T L
Sbjct: 129 QPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIAD 188
Query: 288 --------RIQAVTYLLDRD-----RGAMIEHVDINGLRPLDRAISCRNVPVVQCFLRKG 334
+ LL + + ++ +GL PL A + + Q +R+
Sbjct: 189 NTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRRE 248
Query: 335 AK 336
Sbjct: 249 IA 250
Score = 74.4 bits (183), Expect = 1e-15
Identities = 39/204 (19%), Positives = 62/204 (30%), Gaps = 39/204 (19%)
Query: 99 LRNVYSPNVKVSRLLLLSGADANHITEFLGAAP---------ALCLFAHEGNSEMIALLL 149
L N+ + +LL ++ EF+ + AL + + LL+
Sbjct: 54 LLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLV 113
Query: 150 EFHACID--------------LANSQGRTPLSLAAGRGHMEAVRTLVAAG---ASLGRTD 192
E A + G PLSLAA V L G A L R D
Sbjct: 114 EKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQD 173
Query: 193 TTGRCALVHAARGGHLQNLSPLMLAVKEGHWATAEKLLQHHAPLDQTDGSH-------KT 245
+ G L + + LL A L +
Sbjct: 174 SRGNTVLHALVAIADNTR------ENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLS 227
Query: 246 PLMIAAQEGHVGLLELLLDKGADI 269
PLM+AA+ G +G+ + ++ +
Sbjct: 228 PLMMAAKTGKIGIFQHIIRREIAD 251
Score = 69.4 bits (170), Expect = 9e-14
Identities = 46/223 (20%), Positives = 68/223 (30%), Gaps = 55/223 (24%)
Query: 162 GRTPLSLAAGRGHMEA----VRTLVAAGASL----GRTDTTGRCALVHAARGGHLQNLSP 213
R L RG + + L+ L R +TG+ L A
Sbjct: 5 NRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKAL---------- 54
Query: 214 LMLAVKEGHWATAEKLLQH-----------HAPLDQTDGSHKTPLMIAAQEGHVGLLELL 262
L + G T LL ++P +T L IA + +ELL
Sbjct: 55 --LNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELL 112
Query: 263 LDKGADI--------------LREDGEGLTALSWACMRGRIQAVTYLLDR-DRGAMIEHV 307
++KGAD+ G LS A + V YL + + A +
Sbjct: 113 VEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQ 172
Query: 308 DINGLRPLDRAISCRN---------VPVVQCFLRKGAKLGPTT 341
D G L ++ + + L K AKL P T
Sbjct: 173 DSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDT 215
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats,
cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP:
d.211.1.1
Length = 327
Score = 88.5 bits (219), Expect = 5e-20
Identities = 43/219 (19%), Positives = 73/219 (33%), Gaps = 14/219 (6%)
Query: 109 VSRLLLLSGADANHITEFLGAAPALCLFAHEGNSEMIALLLEFHACIDLANSQGRTPLSL 168
V+ + + N + G P L N E++ L++ + ++ G + L
Sbjct: 112 VNDAFPNTQLNLNIPVDEHGNTP-LHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVK 170
Query: 169 AAGRGHMEAVRT----LVAAGASLGRTDTTGRCALVHAARGGHLQNLSPLMLAVKEGHWA 224
A + T L L D+ R L H + S A K
Sbjct: 171 AVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSA---AAKYYLDI 227
Query: 225 TAEKLLQHHAPLDQTDGSHKTPLMIAA----QEGHVGLLELLLDKGADILREDGEGLTAL 280
+++ Q+ + K ++ + L+L + +D G T L
Sbjct: 228 LMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCL 287
Query: 281 SWACMRGRIQAVTYLLDRDRGAMIEHVDINGLRPLDRAI 319
+ A G I V LLD GA + +GLRP+D
Sbjct: 288 NIAARLGNISIVDALLDY--GADPFIANKSGLRPVDFGA 324
Score = 87.8 bits (217), Expect = 9e-20
Identities = 45/257 (17%), Positives = 81/257 (31%), Gaps = 34/257 (13%)
Query: 98 SLRNVYSPNVKVSRLLLLSGADANHITEFLGAAPALCLFAHEGNSEMIALLLEFHACIDL 157
L+ + P ++ L + + + + E+ +++
Sbjct: 66 FLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNI 125
Query: 158 A-NSQGRTPLSLAAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPLML 216
+ G TPL ++E V+ LV G++ D G S L+
Sbjct: 126 PVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGE---------------SCLVK 170
Query: 217 AVKEGH---WATAEKLLQHHAP-LDQTDGSHKTPLMIAAQEGHVG------------LLE 260
AVK + T E LL + P L D ++T L + L+
Sbjct: 171 AVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMG 230
Query: 261 LLLDKGADILREDGEGLTALSWACMRGRIQAVTYLLD--RDRGAMIEHVDINGLRPLDRA 318
++ K ++ + R ++ LD M+ D NG L+ A
Sbjct: 231 WIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIA 290
Query: 319 ISCRNVPVVQCFLRKGA 335
N+ +V L GA
Sbjct: 291 ARLGNISIVDALLDYGA 307
Score = 82.4 bits (203), Expect = 6e-18
Identities = 35/193 (18%), Positives = 71/193 (36%), Gaps = 27/193 (13%)
Query: 106 NVKVSRLLLLSGADANHITEFLGAAP--ALCLFAHEGNSEMIALLLEFH-ACIDLANSQG 162
N+++ + L+ G++ + G + + +S LL++ C+ L +S
Sbjct: 143 NLELVKHLVKHGSNRLYGDNM-GESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMN 201
Query: 163 RTPL----SLAAGRGHMEAVR--------TLVAAGASLGRTDTTGRCALVHAARGGHLQN 210
RT L + G A + +V ++ T + + + G
Sbjct: 202 RTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGER--- 258
Query: 211 LSPLMLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADIL 270
K+ + L+ D + T L IAA+ G++ +++ LLD GAD
Sbjct: 259 --------KDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPF 310
Query: 271 REDGEGLTALSWA 283
+ GL + +
Sbjct: 311 IANKSGLRPVDFG 323
Score = 42.3 bits (99), Expect = 1e-04
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 137 AHEGNSEMIALLLEFHACIDLANSQGRTPLSLAAG 171
A GN ++ LL++ A +AN G P+ AG
Sbjct: 291 ARLGNISIVDALLDYGADPFIANKSGLRPVDFGAG 325
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP:
k.37.1.1
Length = 93
Score = 82.8 bits (206), Expect = 5e-20
Identities = 34/90 (37%), Positives = 53/90 (58%), Gaps = 2/90 (2%)
Query: 213 PLMLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILRE 272
PL LA + GH + LL+ A ++ D + +TPL +AA+ GH+ +++LLL+ GAD+ +
Sbjct: 5 PLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAK 64
Query: 273 DGEGLTALSWACMRGRIQAVTYLLDRDRGA 302
D G T L A G ++ V LL + GA
Sbjct: 65 DKNGRTPLHLAARNGHLEVVKLLL--EAGA 92
Score = 80.9 bits (201), Expect = 2e-19
Identities = 42/106 (39%), Positives = 60/106 (56%), Gaps = 15/106 (14%)
Query: 162 GRTPLSLAAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPLMLAVKEG 221
GRTPL LAA GH+E V+ L+ AGA + D GR L AAR GHL+
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLE------------ 49
Query: 222 HWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGA 267
+ LL+ A ++ D + +TPL +AA+ GH+ +++LLL+ GA
Sbjct: 50 ---VVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 78.6 bits (195), Expect = 2e-18
Identities = 36/96 (37%), Positives = 54/96 (56%), Gaps = 4/96 (4%)
Query: 240 DGSHKTPLMIAAQEGHVGLLELLLDKGADILREDGEGLTALSWACMRGRIQAVTYLLDRD 299
+G +TPL +AA+ GH+ +++LLL+ GAD+ +D G T L A G ++ V LL +
Sbjct: 1 NG--RTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL--E 56
Query: 300 RGAMIEHVDINGLRPLDRAISCRNVPVVQCFLRKGA 335
GA + D NG PL A ++ VV+ L GA
Sbjct: 57 AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 63.1 bits (155), Expect = 6e-13
Identities = 36/77 (46%), Positives = 46/77 (59%)
Query: 132 ALCLFAHEGNSEMIALLLEFHACIDLANSQGRTPLSLAAGRGHMEAVRTLVAAGASLGRT 191
L L A G+ E++ LLLE A ++ + GRTPL LAA GH+E V+ L+ AGA +
Sbjct: 5 PLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAK 64
Query: 192 DTTGRCALVHAARGGHL 208
D GR L AAR GHL
Sbjct: 65 DKNGRTPLHLAARNGHL 81
Score = 53.5 bits (130), Expect = 1e-09
Identities = 36/81 (44%), Positives = 51/81 (62%), Gaps = 2/81 (2%)
Query: 106 NVKVSRLLLLSGADANHITEFLGAAPALCLFAHEGNSEMIALLLEFHACIDLANSQGRTP 165
+++V +LLL +GAD N + G P L L A G+ E++ LLLE A ++ + GRTP
Sbjct: 14 HLEVVKLLLEAGADVNAKDKN-GRTP-LHLAARNGHLEVVKLLLEAGADVNAKDKNGRTP 71
Query: 166 LSLAAGRGHMEAVRTLVAAGA 186
L LAA GH+E V+ L+ AGA
Sbjct: 72 LHLAARNGHLEVVKLLLEAGA 92
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics,
PSI, protein structure initiative; 2.80A {Legionella
pneumophila} SCOP: a.118.24.1
Length = 376
Score = 88.9 bits (220), Expect = 6e-20
Identities = 46/292 (15%), Positives = 73/292 (25%), Gaps = 61/292 (20%)
Query: 93 AQALCSLRNVYSPNVKVSRLLLLSGADANHITEFLGAAPALCLFAHEGNSEMIALLLEFH 152
Q LC Y+ N K L S A I + A + + + LLL
Sbjct: 64 RQLLCLYYAHYNRNAK----QLWSDAHKKGIKSEVICFVAA-ITGCSSALDTLCLLLTSD 118
Query: 153 ACIDLANSQGRTPLSLAAGRGHMEAVRTLVAAGASLGRTDTT--GRCALVHAARGGHL-- 208
+ + ++ LAA GH+ + L + A AA GHL
Sbjct: 119 EIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHV 178
Query: 209 ------------------QNLSPLML-AVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMI 249
+N AV GH LL L + +
Sbjct: 179 LNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAE-------IH 231
Query: 250 AAQEGHVGLLELLLDKGADILR--------------------EDGEGLTALSWACMRG-- 287
+ G + + + E +G L R
Sbjct: 232 EFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDE 291
Query: 288 -RIQAVTYLLDRD---RGAMIEHVDINGLRPLDRAISCRNVPVVQCFLRKGA 335
+ + +LL A + + L A+ N L +
Sbjct: 292 VLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIPS 343
Score = 87.7 bits (217), Expect = 2e-19
Identities = 37/222 (16%), Positives = 59/222 (26%), Gaps = 25/222 (11%)
Query: 107 VKVSRLLLLSGADANHITEFLGAAPALCLFAHEGNSEMIALLLEFHACIDLAN--SQGRT 164
+ V L A L A G+ ++ L E A ++
Sbjct: 141 LHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYY 200
Query: 165 PLSLAA-GRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHL---QNLSPLMLAVKE 220
AA GRGH + L+ L A +H G ++ + +KE
Sbjct: 201 AFRWAAVGRGHHNVINFLLDCPVMLAY-------AEIHEFEYGEKYVNPFIARHVNRLKE 253
Query: 221 GHWATAEKLLQHHAPLDQTDGSHK--TPLMIAAQEGHVGLLELL--------LDKGADIL 270
H A L + L + LL+ + + A
Sbjct: 254 MHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTA 313
Query: 271 REDGEGLTALSWACMRGRIQAVTYLLDRDRGAMIEHVDINGL 312
G+ L A G A LL +++ N
Sbjct: 314 TIPGDANELLRLALRLGNQGACALLL--SIPSVLALTKANNY 353
Score = 76.9 bits (189), Expect = 7e-16
Identities = 24/182 (13%), Positives = 48/182 (26%), Gaps = 18/182 (9%)
Query: 173 GHMEAVRTLVAAGASLGRTDTTGRCALVHAARGG----------HLQNLSPLMLAVKEGH 222
+ EA+ + ++ + H R +++ +A G
Sbjct: 45 SYKEAIHIFLPGTKNMEQVRQLLCLYYAHYNRNAKQLWSDAHKKGIKSEVICFVAAITGC 104
Query: 223 W---ATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILRED--GEGL 277
T LL + + +AA+ GH+ +L L + + E
Sbjct: 105 SSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENY 164
Query: 278 TALSWACMRGRIQAVTYLLDRDRGAMIEHVDINGLRPLDRAISCRN--VPVVQCFLRKGA 335
A A G + + L + + A + V+ L
Sbjct: 165 HAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWA-AVGRGHHNVINFLLDCPV 223
Query: 336 KL 337
L
Sbjct: 224 ML 225
Score = 51.1 bits (122), Expect = 2e-07
Identities = 26/204 (12%), Positives = 39/204 (19%), Gaps = 57/204 (27%)
Query: 111 RLLLLSGADANHITEFLGAAPALCLFAHE-GNSEMIALLLEFHACIDLANSQGRTPLSLA 169
L A A G+ +I LL+ + A
Sbjct: 180 NRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEI-------HE 232
Query: 170 AGRGHMEAVRTLVAAGASLGRTDT--------------------TGRCALVHAARGGHLQ 209
G + L G L + R
Sbjct: 233 FEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEV 292
Query: 210 NL--------------------------SPLMLAVKEGHWATAEKLLQHHAPLDQTDGSH 243
L L LA++ G+ LL + L T
Sbjct: 293 LLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIPSVLALTK--- 349
Query: 244 KTPLMIAAQEGHVGLLELLLDKGA 267
I G + L + L+
Sbjct: 350 ANNYYINETGGRLDLRAVALEHHH 373
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium,
SGC, metal binding protein; 2.06A {Homo sapiens}
Length = 301
Score = 70.8 bits (173), Expect = 5e-14
Identities = 30/145 (20%), Positives = 47/145 (32%), Gaps = 12/145 (8%)
Query: 169 AAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPLMLAVKEGHWAT--- 225
A + +V A G G+ L LAVK + A+
Sbjct: 158 AICNRDLLSVLEAFANGQDFGQP---------LPGPDAQAPEELVLHLAVKVANQASLPL 208
Query: 226 AEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILREDGEGLTALSWACM 285
+ ++Q+ LD T L AA L+LLL A + + G TAL A
Sbjct: 209 VDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARK 268
Query: 286 RGRIQAVTYLLDRDRGAMIEHVDIN 310
+ + L G + ++
Sbjct: 269 KHHKECEELLEQAQAGTFAFPLHVD 293
Score = 64.6 bits (157), Expect = 6e-12
Identities = 21/156 (13%), Positives = 48/156 (30%), Gaps = 14/156 (8%)
Query: 76 SSRDLQAHWI-------SSVCQSPAQALCSLRNVYSPNVKVSRLLLLSGADAN------- 121
S + +I + + + + ++ +G D
Sbjct: 126 SDMGTRRDYIMAKYVEHRFARRCTPEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPD 185
Query: 122 HITEFLGAAPALCLFAHEGNSEMIALLLEFHACIDLANSQGRTPLSLAAGRGHMEAVRTL 181
A++ + ++ +++ +D + G T L AA + ++ L
Sbjct: 186 AQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLL 245
Query: 182 VAAGASLGRTDTTGRCALVHAARGGHLQNLSPLMLA 217
+ A +G + G AL A + H + L A
Sbjct: 246 LKGRALVGTVNEAGETALDIARKKHHKECEELLEQA 281
Score = 56.2 bits (135), Expect = 4e-09
Identities = 23/122 (18%), Positives = 46/122 (37%), Gaps = 11/122 (9%)
Query: 210 NLSPLMLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIA---AQEGHVGLLELLLDKG 266
+L ++ A G + P Q L +A A + + L++ ++ G
Sbjct: 163 DLLSVLEAFANG----QDFGQPLPGPDAQAPEE--LVLHLAVKVANQASLPLVDFIIQNG 216
Query: 267 ADILREDGEGLTALSWACMRGRIQAVTYLLDRDRGAMIEHVDINGLRPLDRAISCRNVPV 326
+ + +G TAL +A + + + LL A++ V+ G LD A +
Sbjct: 217 GHLDAKAADGNTALHYAALYNQPDCLKLLLKG--RALVGTVNEAGETALDIARKKHHKEC 274
Query: 327 VQ 328
+
Sbjct: 275 EE 276
Score = 31.1 bits (70), Expect = 0.45
Identities = 14/108 (12%), Positives = 28/108 (25%), Gaps = 11/108 (10%)
Query: 242 SHKTPLMIAAQEGHVGLLELLLDKGADILREDGE------GLTALSWACMRGR---IQAV 292
L A + + G D + L A + V
Sbjct: 150 PEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLV 209
Query: 293 TYLLDRDRGAMIEHVDINGLRPLDRAISCRNVPVVQCFLRKGAKLGPT 340
+++ G ++ +G L A ++ L+ A +G
Sbjct: 210 DFIIQN--GGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTV 255
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats,
metal binding protein; 2.10A {Mus musculus} SCOP:
d.211.1.1 g.45.1.1
Length = 278
Score = 70.0 bits (171), Expect = 7e-14
Identities = 31/145 (21%), Positives = 44/145 (30%), Gaps = 12/145 (8%)
Query: 169 AAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPLMLAVKEG---HWAT 225
A + + A G L GH + + L LAV+
Sbjct: 137 AVKTRDIFGLLQAYADGVDLTEK---------IPLANGHEPDETALHLAVRSVDRTSLHI 187
Query: 226 AEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILREDGEGLTALSWACM 285
+ L+Q+ LD+ G T L + L+LLL A I + G T L A
Sbjct: 188 VDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKR 247
Query: 286 RGRIQAVTYLLDRDRGAMIEHVDIN 310
L G HV +
Sbjct: 248 LKHEHCEELLTQALSGRFNSHVHVE 272
Score = 60.4 bits (146), Expect = 1e-10
Identities = 23/102 (22%), Positives = 44/102 (43%), Gaps = 5/102 (4%)
Query: 230 LQHHAPLDQTDGSHKTPLMIA---AQEGHVGLLELLLDKGADILREDGEGLTALSWACMR 286
L PL +T L +A + +++ L+ ++ ++ G+G TAL + C+
Sbjct: 156 LTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLT 215
Query: 287 GRIQAVTYLLDRDRGAMIEHVDINGLRPLDRAISCRNVPVVQ 328
+ + LL A IE + +G PLD A ++ +
Sbjct: 216 DNAECLKLLLRG--KASIEIANESGETPLDIAKRLKHEHCEE 255
Score = 55.8 bits (134), Expect = 5e-09
Identities = 24/142 (16%), Positives = 42/142 (29%), Gaps = 12/142 (8%)
Query: 74 KYSSRDLQAHWISSVCQSPAQALCSLRN-VYSPNVKVSRLLLLSGADANHITEFLGAAP- 131
KY R + A L SL V + ++ G D
Sbjct: 113 KYMERR----YARKKHADTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEP 168
Query: 132 ------ALCLFAHEGNSEMIALLLEFHACIDLANSQGRTPLSLAAGRGHMEAVRTLVAAG 185
+ ++ L++ +D +G T L + E ++ L+
Sbjct: 169 DETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGK 228
Query: 186 ASLGRTDTTGRCALVHAARGGH 207
AS+ + +G L A R H
Sbjct: 229 ASIEIANESGETPLDIAKRLKH 250
Score = 48.1 bits (114), Expect = 2e-06
Identities = 21/81 (25%), Positives = 34/81 (41%), Gaps = 2/81 (2%)
Query: 104 SPNVKVSRLLLLSGADANHITEFLGAAPALCLFAHEGNSEMIALLLEFHACIDLANSQGR 163
++ + L+ + + + T + AL N+E + LLL A I++AN G
Sbjct: 182 RTSLHIVDFLVQNSGNLDKQTG--KGSTALHYCCLTDNAECLKLLLRGKASIEIANESGE 239
Query: 164 TPLSLAAGRGHMEAVRTLVAA 184
TPL +A H L A
Sbjct: 240 TPLDIAKRLKHEHCEELLTQA 260
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing
protein 1; arfgap domain, zinc-binding module, GTPase
activ metal-binding, nitration; 2.30A {Homo sapiens}
Length = 368
Score = 64.8 bits (157), Expect = 8e-12
Identities = 37/189 (19%), Positives = 60/189 (31%), Gaps = 17/189 (8%)
Query: 76 SSRDLQAHWISSVCQSPAQALCSLRNVYSPNVKVSRLLLLSGADANHITEFLGAAPALCL 135
S R + AL + + P++ L GAD N + A L
Sbjct: 182 SLRSKPEPPSEDLGSLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQ 241
Query: 136 FAHEGNSEMIALLLEFHACIDLANSQGRTPLSLAAGRGHMEAVRTLVAAGASLGRTDTTG 195
+ LL+ A ++ A+S GR PL A GH + GA LG D+ G
Sbjct: 242 ATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEG 301
Query: 196 RCALVHAARGGHLQNLSPLMLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGH 255
R PL +A++ + L A + + + + +
Sbjct: 302 R---------------DPLTIAMETANADIVTLLRL--AKMREAEAAQGQAGDETYLDIF 344
Query: 256 VGLLELLLD 264
+ D
Sbjct: 345 RDFSLMASD 353
Score = 64.4 bits (156), Expect = 1e-11
Identities = 38/162 (23%), Positives = 56/162 (34%), Gaps = 13/162 (8%)
Query: 150 EFHACIDLANSQGRTPLSLAAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQ 209
E + + G + + + +A GA + + G
Sbjct: 188 EPPSEDLGSLHPGALLFRASGHPPSLPTMADALAHGADVNWVN-------------GGQD 234
Query: 210 NLSPLMLAVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADI 269
N +PL+ A E LLQ+ A ++Q D + + PL A GH GL L L +GAD+
Sbjct: 235 NATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADL 294
Query: 270 LREDGEGLTALSWACMRGRIQAVTYLLDRDRGAMIEHVDING 311
D EG L+ A VT L G
Sbjct: 295 GARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAG 336
Score = 63.3 bits (153), Expect = 2e-11
Identities = 30/122 (24%), Positives = 43/122 (35%), Gaps = 4/122 (3%)
Query: 209 QNLSPLMLAVKEGHWATAEKLLQHHAPLDQTDGSHK--TPLMIAAQEGHVGLLELLLDKG 266
+ T L H A ++ +G TPL+ A + E LL G
Sbjct: 199 PGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNG 258
Query: 267 ADILREDGEGLTALSWACMRGRIQAVTYLLDRDRGAMIEHVDINGLRPLDRAISCRNVPV 326
A++ + D G L A + G L R GA + D G PL A+ N +
Sbjct: 259 ANVNQADSAGRGPLHHATILGHTGLACLFLKR--GADLGARDSEGRDPLTIAMETANADI 316
Query: 327 VQ 328
V
Sbjct: 317 VT 318
Score = 43.2 bits (101), Expect = 8e-05
Identities = 23/119 (19%), Positives = 40/119 (33%), Gaps = 4/119 (3%)
Query: 222 HWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADI--LREDGEGLTA 279
+ + + + + + + L GAD+ + + T
Sbjct: 179 RPGSLRSKPEPPSEDLGSLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATP 238
Query: 280 LSWACMRGRIQAVTYLLDRDRGAMIEHVDINGLRPLDRAISCRNVPVVQCFLRKGAKLG 338
L A + A +LL GA + D G PL A + + FL++GA LG
Sbjct: 239 LIQATAANSLLACEFLLQN--GANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLG 295
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing
protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1,
linkers, alternat splicing; HET: GDP; 3.38A {Homo
sapiens} PDB: 3lvr_E*
Length = 497
Score = 56.1 bits (135), Expect = 8e-09
Identities = 27/160 (16%), Positives = 54/160 (33%), Gaps = 18/160 (11%)
Query: 76 SSRDLQAHWISS---------VCQSPAQALCSLRNVYSPNVKVSRLLLLSGADAN-HITE 125
S + +I + C Q L + + ++ +G D +
Sbjct: 107 SDMGTRRDYIMAKYVEHRFARRCTPEPQRLW--TAICNRDLLSVLEAFANGQDFGQPLPG 164
Query: 126 FLGAAP---AL---CLFAHEGNSEMIALLLEFHACIDLANSQGRTPLSLAAGRGHMEAVR 179
AP L A++ + ++ +++ +D + G T L AA + ++
Sbjct: 165 PDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLK 224
Query: 180 TLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPLMLAVK 219
L+ A +G + G AL A + H + L A
Sbjct: 225 LLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQA 264
Score = 53.4 bits (128), Expect = 5e-08
Identities = 28/151 (18%), Positives = 46/151 (30%), Gaps = 18/151 (11%)
Query: 166 LSLAAGRGHMEAVRTLVAAGASLGRT------DTTGRCALVHAARGGHLQNLSPLMLAVK 219
L A + +V A G G+ L A + + +L
Sbjct: 136 LWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASL-------- 187
Query: 220 EGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADILREDGEGLTA 279
+ ++Q+ LD T L AA L+LLL A + + G TA
Sbjct: 188 ----PLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETA 243
Query: 280 LSWACMRGRIQAVTYLLDRDRGAMIEHVDIN 310
L A + + L G + ++
Sbjct: 244 LDIARKKHHKECEELLEQAQAGTFAFPLHVD 274
Score = 49.9 bits (119), Expect = 6e-07
Identities = 21/119 (17%), Positives = 44/119 (36%), Gaps = 11/119 (9%)
Query: 214 LMLAVKEGHWATAEKLLQHHA------PLDQTDGSHKTPLMIA---AQEGHVGLLELLLD 264
L A+ + + + P + L +A A + + L++ ++
Sbjct: 136 LWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQ 195
Query: 265 KGADILREDGEGLTALSWACMRGRIQAVTYLLDRDRGAMIEHVDINGLRPLDRAISCRN 323
G + + +G TAL +A + + + LL A++ V+ G LD A +
Sbjct: 196 NGGHLDAKAADGNTALHYAALYNQPDCLKLLLKG--RALVGTVNEAGETALDIARKKHH 252
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 53.1 bits (127), Expect = 8e-08
Identities = 44/240 (18%), Positives = 72/240 (30%), Gaps = 64/240 (26%)
Query: 51 ADKSLE--LGHHILKAHVYKNMTLVK-----YSSRDLQAHWISSVCQSPAQALCSLRNVY 103
AD + G IL V N + + ++ ++ + + ++ ++
Sbjct: 1649 ADNHFKDTYGFSILDI-VINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIF 1707
Query: 104 SP-NVKVSRLLLLSGADANHITEFLGAAPALCLFAHEGNSEMIALLLEFHACIDLANSQG 162
N + S T+F PAL L+E A + S+G
Sbjct: 1708 KEINEHSTSYTFRSEKGLLSATQF--TQPAL-------------TLMEK-AAFEDLKSKG 1751
Query: 163 RTPL-SLAAGRGHMEAVRTLVAAGASLGRTDTTGR--CALVHAARGGHLQNLSPLMLAVK 219
P + AG H SLG AL A + ++ L+ V
Sbjct: 1752 LIPADATFAG--H------------SLG-------EYAALASLA--DVM-SIESLVEVVF 1787
Query: 220 E-GHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGL---LELLLDKGADILREDGE 275
G +Q P D+ S+ MIA G V E L + + G
Sbjct: 1788 YRG------MTMQVAVPRDELGRSN--YGMIAINPGRVAASFSQEALQYVVERVGKRTGW 1839
Score = 43.1 bits (101), Expect = 1e-04
Identities = 45/302 (14%), Positives = 78/302 (25%), Gaps = 115/302 (38%)
Query: 23 ESNKFLC--DLRAGHAGIAFRLSRLQAPLDADKSLELGHHILKAHVYKNMTLVKYSSRDL 80
E+ +L D+ HA +A +L + D +L ++K Y ++R +
Sbjct: 92 ENC-YLEGNDI---HA-LAAKL-----LQENDTTLVKTKELIKN--Y-------ITARIM 132
Query: 81 QAHWISSVCQSP----AQA---------------------LCSLRNVYSPNVK-----VS 110
S L L Y V +
Sbjct: 133 AKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSA 192
Query: 111 RLLL----------------------LSGADANHITEFLGAAPALCLFAHEGNSEMIALL 148
L L ++L + P C +I ++
Sbjct: 193 ETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISC--------PLIGVI 244
Query: 149 LEFHACIDLANSQGRTPL----SLAAGRGHMEAVRT--LVAAGAS--------------- 187
H + A G TP L GH + + T +A S
Sbjct: 245 QLAHYVV-TAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVL 303
Query: 188 --LG-R-TDTTGRCALVHAARGGHLQN----LSPLMLAVKEGHWATAEKLLQH---HAPL 236
+G R + +L + L+N SP ML++ + + H P
Sbjct: 304 FFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSP-MLSISNLTQEQVQDYVNKTNSHLPA 362
Query: 237 DQ 238
+
Sbjct: 363 GK 364
Score = 39.6 bits (92), Expect = 0.002
Identities = 49/289 (16%), Positives = 79/289 (27%), Gaps = 101/289 (34%)
Query: 27 FLCDLRAGHAGIAFRLSRLQAPLDADKSLELGH----HIL------KAHVYKNMTLV-KY 75
F +R + A+ + L + D SLE +L + V + +
Sbjct: 304 FFIGVRC-Y--EAYPNTSLPPSILED-SLENNEGVPSPMLSISNLTQEQVQDYVNKTNSH 359
Query: 76 SSRDLQAHWIS-------SVCQSPAQALC----SLRNVYSPNVKVSRLLLLSGADANHI- 123
Q IS V P Q+L +LR +P SG D + I
Sbjct: 360 LPAGKQVE-ISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAP----------SGLDQSRIP 408
Query: 124 ---------TEFLG-AAPALCLFAHEGNSEMIALLLEFHACIDLANSQGRTPLSLAAGRG 173
FL A+P FH + L + A
Sbjct: 409 FSERKLKFSNRFLPVASP-------------------FH-----------SHLLVPASDL 438
Query: 174 HMEAV--RTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPL-------MLAVKEGHWA 224
+ + + + + + G L+ LS + W
Sbjct: 439 INKDLVKNNVSFNAKDI-------QIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWE 491
Query: 225 TAEKLLQHHAPLDQTDG--SHKTPLMIAAQEGHVGLLELL---LDKGAD 268
T + H LD G S L ++G G+ ++ LD D
Sbjct: 492 TTTQFKATHI-LDFGPGGASGLGVLTHRNKDG-TGVRVIVAGTLDINPD 538
Score = 29.6 bits (66), Expect = 1.9
Identities = 32/180 (17%), Positives = 53/180 (29%), Gaps = 60/180 (33%)
Query: 143 EMIALLLEFHACIDLANSQGRTPLSLAAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHA 202
E++ L + + + + G+ L E L D +HA
Sbjct: 59 ELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFEN--------CYLEGND-------IHA 103
Query: 203 ARGGHLQNLSPLMLAVKEG--HWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGLL- 259
LQ ++ KE ++ TA + + P D+ + L A EG+ L+
Sbjct: 104 LAAKLLQENDTTLVKTKELIKNYITARIMAKR--PFDK---KSNSALFRAVGEGNAQLVA 158
Query: 260 -------------EL-------------LLDKGADILRED-----------GEGLTALSW 282
EL L+ A+ L E +GL L W
Sbjct: 159 IFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEW 218
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 36.8 bits (84), Expect = 0.011
Identities = 19/101 (18%), Positives = 38/101 (37%), Gaps = 14/101 (13%)
Query: 258 LLELLLDKGADILREDGEGLTALSWACMRGRIQAVTYLLDRDRGAMIEHVD--INGLRPL 315
L LL K +++++ E + +++ + I+ IE D N +
Sbjct: 67 LFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVF 126
Query: 316 DRAISCRNVPVVQCF--LRKGA-KLGPTTW----SMA-AGK 348
+ NV +Q + LR+ +L P + +GK
Sbjct: 127 AK----YNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGK 163
Score = 35.2 bits (80), Expect = 0.034
Identities = 35/175 (20%), Positives = 60/175 (34%), Gaps = 49/175 (28%)
Query: 15 WL--IRRDEGES-----NKFLCDLRAGHAGIAFRLSRLQAPLDADKSLELGHHILKAHVY 67
WL + E+ K L + + S ++ + + ++ EL +LK+ Y
Sbjct: 186 WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQA-EL-RRLLKSKPY 243
Query: 68 KNMTLVKYSSRDLQAHWISSVCQSPAQALCSLRNVYSPNV-KV----SRLLLLSGADANH 122
+N LV L NV + ++LL +
Sbjct: 244 ENCLLV-------------------------LLNVQNAKAWNAFNLSCKILLTT-RFKQ- 276
Query: 123 ITEFLGAAPA--LCLFAHEGN---SEMIALLLEFHACI--DLANS-QGRTPLSLA 169
+T+FL AA + L H E+ +LLL++ C DL P L+
Sbjct: 277 VTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLS 331
Score = 32.5 bits (73), Expect = 0.26
Identities = 26/119 (21%), Positives = 46/119 (38%), Gaps = 23/119 (19%)
Query: 57 LGHHILKAHVYKNMTLVKYSSRDLQAHWI-------SSVCQSPAQALCSLRNV--YSPNV 107
+GHH+ + MTL + D ++ S+ + L +L+ + Y P +
Sbjct: 477 IGHHLKNIEHPERMTLFRMVFLDF--RFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYI 534
Query: 108 -----KVSRLLLLSGADANHITEFLGAAPALCLFAHEGNSEMIALLLEFHACIDLANSQ 161
K RL+ N I +FL + + + IAL+ E A + A+ Q
Sbjct: 535 CDNDPKYERLV-------NAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQ 586
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.0 bits (74), Expect = 0.069
Identities = 12/64 (18%), Positives = 20/64 (31%), Gaps = 38/64 (59%)
Query: 74 KYSSRDLQAHWISSVCQSPAQALCSLRNVYSPNVKVSRLLLLSGADANHITEFLGAAPAL 133
K + + LQA SL+ +Y+ + +APAL
Sbjct: 19 KQALKKLQA---------------SLK-LYADD----------------------SAPAL 40
Query: 134 CLFA 137
+ A
Sbjct: 41 AIKA 44
>2bfd_B 2-oxoisovalerate dehydrogenase beta subunit; oxidoreductase,
multi-enzyme complex, acylation, oxidative
decarboxylation, maple syrup urine disease; HET: TDP;
1.39A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB:
1dtw_B* 1olu_B* 1ols_B* 1v11_B* 1v16_B* 1v1m_B* 1u5b_B*
1wci_B* 1v1r_B* 1x7x_B* 1x7w_B* 1x7z_B* 1x80_B* 2beu_B*
2bev_B* 2bew_B* 2bfb_B* 2bfc_B* 1x7y_B* 2bfe_B* ...
Length = 342
Score = 31.3 bits (72), Expect = 0.39
Identities = 13/55 (23%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 263 LDKGADILREDGEGLTALSWACMRGRIQAVTYLLDRDRGAMIEHVDINGLRPLDR 317
L + A++++E G +T ++W I+ V + G E +D+ + P D
Sbjct: 210 LSQ-AEVIQE-GSDVTLVAWGTQVHVIREVASMAKEKLGVSCEVIDLRTIIPWDV 262
>2hpi_A DNA polymerase III alpha subunit; POL-beta-like
nucleotidyltransferase fold, transferase; HET: DNA;
3.00A {Thermus aquaticus} PDB: 2hpm_A* 3e0d_A*
Length = 1220
Score = 28.0 bits (63), Expect = 6.4
Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 3/32 (9%)
Query: 268 DILREDGEGLTALSWACMRGRIQAVTYLLDRD 299
+ILRE +GL ALS C+ I ++L
Sbjct: 130 EILREHAQGLIALS-GCLGAEIP--QFILQDR 158
>2i5h_A Hypothetical protein AF1531; PFAM:DUF655, PSI-2, structural
genomics, protein structure initiative; 1.74A
{Archaeoglobus fulgidus} SCOP: e.71.1.1
Length = 205
Score = 27.3 bits (60), Expect = 6.5
Identities = 10/40 (25%), Positives = 17/40 (42%)
Query: 230 LQHHAPLDQTDGSHKTPLMIAAQEGHVGLLELLLDKGADI 269
+ + P D+ + PL E + LLE+ + KG
Sbjct: 27 MPYGHPDDKRPIHRREPLAQVVGERNFTLLEVSIRKGKQP 66
>2hxo_A Putative TETR-family transcriptional regulator; TETR
transcriptional regulator, structural genomics, PSI-2,
structure initiative; 2.40A {Streptomyces coelicolor}
Length = 237
Score = 27.5 bits (61), Expect = 6.9
Identities = 28/127 (22%), Positives = 38/127 (29%), Gaps = 11/127 (8%)
Query: 157 LANSQGRTPLSLAAGRGHMEAVRTLVAAGASLGRTDTTGRCALVHAARGGHLQNLSPLML 216
LA RTP A R R + A G T AL+H G QN +
Sbjct: 112 LATQLSRTPWGTVAPRIFESLGRQVQAMGVPEAHWFTASS-ALMHYILGAAGQNAANSAS 170
Query: 217 AVKEGHWATAEKLLQHHAPLDQTDGSHKTPLMIAAQEGHVGL---------LELLLDKGA 267
A G ++ L + + P A + G + L+L G
Sbjct: 171 AGPVGADVDRDEFLDTVSTAWEGLDPDAYPFTRAVADQVRGHDDREQFLAGITLVLT-GI 229
Query: 268 DILREDG 274
L G
Sbjct: 230 TALHRPG 236
>2hnh_A DNA polymerase III alpha subunit; DNA replication,
nucleotidyltransferase, beta, PHP, transferase; HET:
DNA; 2.30A {Escherichia coli} PDB: 2hqa_A*
Length = 910
Score = 27.5 bits (62), Expect = 8.2
Identities = 9/23 (39%), Positives = 10/23 (43%), Gaps = 1/23 (4%)
Query: 268 DILREDGEGLTALSWACMRGRIQ 290
D L E EGL LS G +
Sbjct: 119 DWLIELNEGLILLS-GGRMGDVG 140
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.135 0.414
Gapped
Lambda K H
0.267 0.0672 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,491,411
Number of extensions: 328983
Number of successful extensions: 2087
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1024
Number of HSP's successfully gapped: 301
Length of query: 356
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 261
Effective length of database: 4,049,298
Effective search space: 1056866778
Effective search space used: 1056866778
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.2 bits)