BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14207
(343 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1A44|A Chain A, Phosphatidylethanolamine Binding Protein From Calf Brain
Length = 185
Score = 161 bits (407), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 84/158 (53%), Positives = 107/158 (67%), Gaps = 8/158 (5%)
Query: 29 KVEYPGGVSVNLGNVLTPTQVKDQPT-VTWNA-DPNQSYVLCMTVNHPIPDPDAPSRKEH 86
+V+Y G LG VLTPTQVK++PT +TW+ DP + Y L +T DPDAPSRK+
Sbjct: 25 QVKYGGAEVDELGKVLTPTQVKNRPTSITWDGLDPGKLYTLVLT------DPDAPSRKDP 78
Query: 87 TYREWHHWLVGNIKGGKLDGADFLSAYVGAGPPPNTGLHRYVFLVYKQPNSITFDEARLP 146
YREWHH+LV N+KG + LS YVG+GPP TGLHRYV+LVY+Q + DE L
Sbjct: 79 KYREWHHFLVVNMKGNNISSGTVLSDYVGSGPPKGTGLHRYVWLVYEQEGPLKCDEPILS 138
Query: 147 NNSQDGRAKFSIANFAEKYKLGEPIAVNFFQAEYDDYV 184
N S D R KF +A+F +KY+LG P+A +QAE+DDYV
Sbjct: 139 NRSGDHRGKFKVASFRKKYELGAPVAGTCYQAEWDDYV 176
Score = 143 bits (360), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 76/143 (53%), Positives = 95/143 (66%), Gaps = 8/143 (5%)
Query: 184 VEYPGGVSVNLGNVLTPTQVKDQPT-VTWNA-DPNQSYVLCMTVNHPIPDPDAPSRKEHT 241
V+Y G LG VLTPTQVK++PT +TW+ DP + Y L +T DPDAPSRK+
Sbjct: 26 VKYGGAEVDELGKVLTPTQVKNRPTSITWDGLDPGKLYTLVLT------DPDAPSRKDPK 79
Query: 242 YREWHHWLVGNIKGGKLDGADFLSAYVGAGPPPNTGLHRYVFLVYKQPNSITFDEARLPN 301
YREWHH+LV N+KG + LS YVG+GPP TGLHRYV+LVY+Q + DE L N
Sbjct: 80 YREWHHFLVVNMKGNNISSGTVLSDYVGSGPPKGTGLHRYVWLVYEQEGPLKCDEPILSN 139
Query: 302 NSQDGRAKFSIANFAEKYKLGEP 324
S D R KF +A+F +KY+LG P
Sbjct: 140 RSGDHRGKFKVASFRKKYELGAP 162
>pdb|1B7A|A Chain A, Structure Of The Phosphatidylethanolamine-Binding Protein
From Bovine Brain
pdb|1B7A|B Chain B, Structure Of The Phosphatidylethanolamine-Binding Protein
From Bovine Brain
Length = 186
Score = 160 bits (406), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 84/158 (53%), Positives = 107/158 (67%), Gaps = 8/158 (5%)
Query: 29 KVEYPGGVSVNLGNVLTPTQVKDQPT-VTWNA-DPNQSYVLCMTVNHPIPDPDAPSRKEH 86
+V+Y G LG VLTPTQVK++PT +TW+ DP + Y L +T DPDAPSRK+
Sbjct: 25 QVKYGGAEVDELGKVLTPTQVKNRPTSITWDGLDPGKLYTLVLT------DPDAPSRKDP 78
Query: 87 TYREWHHWLVGNIKGGKLDGADFLSAYVGAGPPPNTGLHRYVFLVYKQPNSITFDEARLP 146
YREWHH+LV N+KG + LS YVG+GPP TGLHRYV+LVY+Q + DE L
Sbjct: 79 KYREWHHFLVVNMKGNNISSGTVLSDYVGSGPPKGTGLHRYVWLVYEQEGPLKCDEPILS 138
Query: 147 NNSQDGRAKFSIANFAEKYKLGEPIAVNFFQAEYDDYV 184
N S D R KF +A+F +KY+LG P+A +QAE+DDYV
Sbjct: 139 NRSGDHRGKFKVASFRKKYELGAPVAGTCYQAEWDDYV 176
Score = 142 bits (359), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 76/143 (53%), Positives = 95/143 (66%), Gaps = 8/143 (5%)
Query: 184 VEYPGGVSVNLGNVLTPTQVKDQPT-VTWNA-DPNQSYVLCMTVNHPIPDPDAPSRKEHT 241
V+Y G LG VLTPTQVK++PT +TW+ DP + Y L +T DPDAPSRK+
Sbjct: 26 VKYGGAEVDELGKVLTPTQVKNRPTSITWDGLDPGKLYTLVLT------DPDAPSRKDPK 79
Query: 242 YREWHHWLVGNIKGGKLDGADFLSAYVGAGPPPNTGLHRYVFLVYKQPNSITFDEARLPN 301
YREWHH+LV N+KG + LS YVG+GPP TGLHRYV+LVY+Q + DE L N
Sbjct: 80 YREWHHFLVVNMKGNNISSGTVLSDYVGSGPPKGTGLHRYVWLVYEQEGPLKCDEPILSN 139
Query: 302 NSQDGRAKFSIANFAEKYKLGEP 324
S D R KF +A+F +KY+LG P
Sbjct: 140 RSGDHRGKFKVASFRKKYELGAP 162
>pdb|1BD9|A Chain A, Human Phosphatidylethanolamine Binding Protein
pdb|1BD9|B Chain B, Human Phosphatidylethanolamine Binding Protein
pdb|1BEH|A Chain A, Human Phosphatidylethanolamine Binding Protein In Complex
With Cacodylate
pdb|1BEH|B Chain B, Human Phosphatidylethanolamine Binding Protein In Complex
With Cacodylate
pdb|2QYQ|A Chain A, Human Raf Kinase Inhibitor Protein (Rkip) In Complex With
O- Phosphotyrosine
pdb|2L7W|A Chain A, Solution Structure Of The Human Raf-1 Kinase Inhibitor
Protein
Length = 187
Score = 154 bits (390), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 81/157 (51%), Positives = 103/157 (65%), Gaps = 8/157 (5%)
Query: 30 VEYPGGVSVNLGNVLTPTQVKDQPT-VTWNA-DPNQSYVLCMTVNHPIPDPDAPSRKEHT 87
V Y G LG VLTPTQVK++PT ++W+ D + Y L +T DPDAPSRK+
Sbjct: 27 VTYAGAAVDELGKVLTPTQVKNRPTSISWDGLDSGKLYTLVLT------DPDAPSRKDPK 80
Query: 88 YREWHHWLVGNIKGGKLDGADFLSAYVGAGPPPNTGLHRYVFLVYKQPNSITFDEARLPN 147
YREWHH+LV N+KG + LS YVG+GPP TGLHRYV+LVY+Q + DE L N
Sbjct: 81 YREWHHFLVVNMKGNDISSGTVLSDYVGSGPPKGTGLHRYVWLVYEQDRPLKCDEPILSN 140
Query: 148 NSQDGRAKFSIANFAEKYKLGEPIAVNFFQAEYDDYV 184
S D R KF +A+F +KY+L P+A +QAE+DDYV
Sbjct: 141 RSGDHRGKFKVASFRKKYELRAPVAGTCYQAEWDDYV 177
Score = 138 bits (347), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 74/150 (49%), Positives = 96/150 (64%), Gaps = 8/150 (5%)
Query: 177 QAEYDDYVEYPGGVSVNLGNVLTPTQVKDQPT-VTWNA-DPNQSYVLCMTVNHPIPDPDA 234
Q ++ +V Y G LG VLTPTQVK++PT ++W+ D + Y L +T DPDA
Sbjct: 20 QPQHPLHVTYAGAAVDELGKVLTPTQVKNRPTSISWDGLDSGKLYTLVLT------DPDA 73
Query: 235 PSRKEHTYREWHHWLVGNIKGGKLDGADFLSAYVGAGPPPNTGLHRYVFLVYKQPNSITF 294
PSRK+ YREWHH+LV N+KG + LS YVG+GPP TGLHRYV+LVY+Q +
Sbjct: 74 PSRKDPKYREWHHFLVVNMKGNDISSGTVLSDYVGSGPPKGTGLHRYVWLVYEQDRPLKC 133
Query: 295 DEARLPNNSQDGRAKFSIANFAEKYKLGEP 324
DE L N S D R KF +A+F +KY+L P
Sbjct: 134 DEPILSNRSGDHRGKFKVASFRKKYELRAP 163
>pdb|2IQY|A Chain A, Rat Phosphatidylethanolamine-Binding Protein
Length = 190
Score = 154 bits (390), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 82/159 (51%), Positives = 109/159 (68%), Gaps = 10/159 (6%)
Query: 29 KVEYPGGVSVN-LGNVLTPTQVKDQPT-VTWNA-DPNQSYVLCMTVNHPIPDPDAPSRKE 85
+V+Y GGV+V+ LG VLTPTQV ++P+ ++W+ DP + Y L +T DPDAPSRK+
Sbjct: 29 RVDY-GGVTVDELGKVLTPTQVMNRPSSISWDGLDPGKLYTLVLT------DPDAPSRKD 81
Query: 86 HTYREWHHWLVGNIKGGKLDGADFLSAYVGAGPPPNTGLHRYVFLVYKQPNSITFDEARL 145
+REWHH+LV N+KG + LS YVG+GPP +TGLHRYV+LVY+Q + DE L
Sbjct: 82 PKFREWHHFLVVNMKGNDISSGTVLSEYVGSGPPKDTGLHRYVWLVYEQEQPLNCDEPIL 141
Query: 146 PNNSQDGRAKFSIANFAEKYKLGEPIAVNFFQAEYDDYV 184
N S D R KF + +F +KY LG P+A FQAE+DD V
Sbjct: 142 SNKSGDNRGKFKVESFRKKYHLGAPVAGTCFQAEWDDSV 180
Score = 138 bits (347), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 74/144 (51%), Positives = 98/144 (68%), Gaps = 10/144 (6%)
Query: 184 VEYPGGVSVN-LGNVLTPTQVKDQPT-VTWNA-DPNQSYVLCMTVNHPIPDPDAPSRKEH 240
V+Y GGV+V+ LG VLTPTQV ++P+ ++W+ DP + Y L +T DPDAPSRK+
Sbjct: 30 VDY-GGVTVDELGKVLTPTQVMNRPSSISWDGLDPGKLYTLVLT------DPDAPSRKDP 82
Query: 241 TYREWHHWLVGNIKGGKLDGADFLSAYVGAGPPPNTGLHRYVFLVYKQPNSITFDEARLP 300
+REWHH+LV N+KG + LS YVG+GPP +TGLHRYV+LVY+Q + DE L
Sbjct: 83 KFREWHHFLVVNMKGNDISSGTVLSEYVGSGPPKDTGLHRYVWLVYEQEQPLNCDEPILS 142
Query: 301 NNSQDGRAKFSIANFAEKYKLGEP 324
N S D R KF + +F +KY LG P
Sbjct: 143 NKSGDNRGKFKVESFRKKYHLGAP 166
>pdb|2IQX|A Chain A, Rat Phosphatidylethanolamine-Binding Protein Containing
The S153e Mutation In The Complex With
O-Phosphorylethanolamine
pdb|2IQX|B Chain B, Rat Phosphatidylethanolamine-Binding Protein Containing
The S153e Mutation In The Complex With
O-Phosphorylethanolamine
pdb|2IQX|C Chain C, Rat Phosphatidylethanolamine-Binding Protein Containing
The S153e Mutation In The Complex With
O-Phosphorylethanolamine
Length = 187
Score = 154 bits (389), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 82/159 (51%), Positives = 108/159 (67%), Gaps = 10/159 (6%)
Query: 29 KVEYPGGVSVN-LGNVLTPTQVKDQPT-VTWNA-DPNQSYVLCMTVNHPIPDPDAPSRKE 85
+V+Y GGV+V+ LG VLTPTQV ++P+ ++W+ DP + Y L +T DPDAPSRK+
Sbjct: 26 RVDY-GGVTVDELGKVLTPTQVMNRPSSISWDGLDPGKLYTLVLT------DPDAPSRKD 78
Query: 86 HTYREWHHWLVGNIKGGKLDGADFLSAYVGAGPPPNTGLHRYVFLVYKQPNSITFDEARL 145
+REWHH+LV N+KG + LS YVG+GPP +TGLHRYV+LVY+Q + DE L
Sbjct: 79 PKFREWHHFLVVNMKGNDISSGTVLSEYVGSGPPKDTGLHRYVWLVYEQEQPLNCDEPIL 138
Query: 146 PNNSQDGRAKFSIANFAEKYKLGEPIAVNFFQAEYDDYV 184
N S D R KF + F +KY LG P+A FQAE+DD V
Sbjct: 139 SNKSGDNRGKFKVEEFRKKYHLGAPVAGTCFQAEWDDSV 177
Score = 137 bits (346), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 74/144 (51%), Positives = 97/144 (67%), Gaps = 10/144 (6%)
Query: 184 VEYPGGVSVN-LGNVLTPTQVKDQPT-VTWNA-DPNQSYVLCMTVNHPIPDPDAPSRKEH 240
V+Y GGV+V+ LG VLTPTQV ++P+ ++W+ DP + Y L +T DPDAPSRK+
Sbjct: 27 VDY-GGVTVDELGKVLTPTQVMNRPSSISWDGLDPGKLYTLVLT------DPDAPSRKDP 79
Query: 241 TYREWHHWLVGNIKGGKLDGADFLSAYVGAGPPPNTGLHRYVFLVYKQPNSITFDEARLP 300
+REWHH+LV N+KG + LS YVG+GPP +TGLHRYV+LVY+Q + DE L
Sbjct: 80 KFREWHHFLVVNMKGNDISSGTVLSEYVGSGPPKDTGLHRYVWLVYEQEQPLNCDEPILS 139
Query: 301 NNSQDGRAKFSIANFAEKYKLGEP 324
N S D R KF + F +KY LG P
Sbjct: 140 NKSGDNRGKFKVEEFRKKYHLGAP 163
>pdb|1KN3|A Chain A, Murine Pebp-2 (Phosphatidylethanolamine-Binding Protein-2)
Length = 183
Score = 151 bits (382), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 80/158 (50%), Positives = 101/158 (63%), Gaps = 8/158 (5%)
Query: 29 KVEYPGGVSVNLGNVLTPTQVKDQP-TVTWNA-DPNQSYVLCMTVNHPIPDPDAPSRKEH 86
+V Y LG VLTPTQVK +P +++W+ DP + Y L +T DPDAPSRK+
Sbjct: 22 RVTYTEAEVEELGQVLTPTQVKHRPGSISWDGLDPGKLYTLILT------DPDAPSRKKP 75
Query: 87 TYREWHHWLVGNIKGGKLDGADFLSAYVGAGPPPNTGLHRYVFLVYKQPNSITFDEARLP 146
YREWHH+LV N+KG + + LS YVG+GPP TGLHRYV+LVY+Q + DE L
Sbjct: 76 VYREWHHFLVVNMKGNDISSGNVLSDYVGSGPPKGTGLHRYVWLVYQQDKPLRCDEPILT 135
Query: 147 NNSQDGRAKFSIANFAEKYKLGEPIAVNFFQAEYDDYV 184
N S D R KF A F +KY LG P+A +QAE+D YV
Sbjct: 136 NRSGDHRGKFKTAAFRKKYHLGAPVAGTCYQAEWDSYV 173
Score = 135 bits (340), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 73/143 (51%), Positives = 90/143 (62%), Gaps = 8/143 (5%)
Query: 184 VEYPGGVSVNLGNVLTPTQVKDQP-TVTWNA-DPNQSYVLCMTVNHPIPDPDAPSRKEHT 241
V Y LG VLTPTQVK +P +++W+ DP + Y L +T DPDAPSRK+
Sbjct: 23 VTYTEAEVEELGQVLTPTQVKHRPGSISWDGLDPGKLYTLILT------DPDAPSRKKPV 76
Query: 242 YREWHHWLVGNIKGGKLDGADFLSAYVGAGPPPNTGLHRYVFLVYKQPNSITFDEARLPN 301
YREWHH+LV N+KG + + LS YVG+GPP TGLHRYV+LVY+Q + DE L N
Sbjct: 77 YREWHHFLVVNMKGNDISSGNVLSDYVGSGPPKGTGLHRYVWLVYQQDKPLRCDEPILTN 136
Query: 302 NSQDGRAKFSIANFAEKYKLGEP 324
S D R KF A F +KY LG P
Sbjct: 137 RSGDHRGKFKTAAFRKKYHLGAP 159
>pdb|2JYZ|A Chain A, Cg7054 Solution Structure
Length = 179
Score = 143 bits (361), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 76/158 (48%), Positives = 103/158 (65%), Gaps = 7/158 (4%)
Query: 29 KVEYPGGVSVNLGNVLTPTQVKDQPTVTWNADPNQSYVLCMTVNHPIPDPDAPSRKEHTY 88
KV Y + V GN LTPTQVKDQP V+W+ +S +L + + DPDAP+R++ Y
Sbjct: 18 KVIYGDDLEVKQGNELTPTQVKDQPIVSWSGLEGKSNLLTLL----MVDPDAPTRQDPKY 73
Query: 89 REWHHWLVGNIKGGKLD--GADFLSAYVGAGPPPNTGLHRYVFLVYKQPNSITFDEARLP 146
RE HW V NI G + G L+ YVG+GPP +TGLHRY+FL+Y+Q N I + +
Sbjct: 74 REILHWSVVNIPGSNENPSGGHSLADYVGSGPPKDTGLHRYIFLLYRQENKIE-ETPTIS 132
Query: 147 NNSQDGRAKFSIANFAEKYKLGEPIAVNFFQAEYDDYV 184
N ++ GR F+ +FA K+ LGEPIA N++QA+YDDYV
Sbjct: 133 NTTRTGRLNFNARDFAAKHGLGEPIAANYYQAQYDDYV 170
Score = 118 bits (296), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 65/143 (45%), Positives = 89/143 (62%), Gaps = 7/143 (4%)
Query: 184 VEYPGGVSVNLGNVLTPTQVKDQPTVTWNADPNQSYVLCMTVNHPIPDPDAPSRKEHTYR 243
V Y + V GN LTPTQVKDQP V+W+ +S +L + + DPDAP+R++ YR
Sbjct: 19 VIYGDDLEVKQGNELTPTQVKDQPIVSWSGLEGKSNLLTLL----MVDPDAPTRQDPKYR 74
Query: 244 EWHHWLVGNIKGGKLD--GADFLSAYVGAGPPPNTGLHRYVFLVYKQPNSITFDEARLPN 301
E HW V NI G + G L+ YVG+GPP +TGLHRY+FL+Y+Q N I + + N
Sbjct: 75 EILHWSVVNIPGSNENPSGGHSLADYVGSGPPKDTGLHRYIFLLYRQENKIE-ETPTISN 133
Query: 302 NSQDGRAKFSIANFAEKYKLGEP 324
++ GR F+ +FA K+ LGEP
Sbjct: 134 TTRTGRLNFNARDFAAKHGLGEP 156
>pdb|3AXY|A Chain A, Structure Of Florigen Activation Complex Consisting Of
Rice Florigen Hd3a, 14-3-3 Protein Gf14 And Rice Fd
Homolog Osfd1
pdb|3AXY|B Chain B, Structure Of Florigen Activation Complex Consisting Of
Rice Florigen Hd3a, 14-3-3 Protein Gf14 And Rice Fd
Homolog Osfd1
pdb|3AXY|G Chain G, Structure Of Florigen Activation Complex Consisting Of
Rice Florigen Hd3a, 14-3-3 Protein Gf14 And Rice Fd
Homolog Osfd1
pdb|3AXY|H Chain H, Structure Of Florigen Activation Complex Consisting Of
Rice Florigen Hd3a, 14-3-3 Protein Gf14 And Rice Fd
Homolog Osfd1
Length = 170
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 78/161 (48%), Gaps = 16/161 (9%)
Query: 20 NSALRTAQGKVEYPGGVSVNLGNVLTPTQVKDQPTVTWNADPNQSYVLCMTVNHPIPDPD 79
++ +R+ KV Y G +V+ G L P+ V QP V + +++ + V DPD
Sbjct: 22 DAFVRSTNLKVTY-GSKTVSNGLELKPSMVTHQPRVEVGGNDMRTFYTLVMV-----DPD 75
Query: 80 APSRKEHTYREWHHWLVGNIKGGKLDGADFLSAYVG-AGPPPNTGLHRYVFLVYKQPNSI 138
APS + RE+ HWLV +I G A F + P P G+HR VF++++Q
Sbjct: 76 APSPSDPNLREYLHWLVTDIPGTT--AASFGQEVMSYESPRPTMGIHRLVFVLFQQ---- 129
Query: 139 TFDEARLPNNSQDGRAKFSIANFAEKYKLGEPIAVNFFQAE 179
R + R F+ +FAE Y LG P+A +F ++
Sbjct: 130 ---LGRQTVYAPGWRQNFNTKDFAELYNLGSPVAAVYFNSQ 167
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 64/138 (46%), Gaps = 15/138 (10%)
Query: 188 GGVSVNLGNVLTPTQVKDQPTVTWNADPNQSYVLCMTVNHPIPDPDAPSRKEHTYREWHH 247
G +V+ G L P+ V QP V + +++ + V DPDAPS + RE+ H
Sbjct: 35 GSKTVSNGLELKPSMVTHQPRVEVGGNDMRTFYTLVMV-----DPDAPSPSDPNLREYLH 89
Query: 248 WLVGNIKGGKLDGADFLSAYVG-AGPPPNTGLHRYVFLVYKQPNSITFDEARLPNNSQDG 306
WLV +I G A F + P P G+HR VF++++Q R +
Sbjct: 90 WLVTDIPGTT--AASFGQEVMSYESPRPTMGIHRLVFVLFQQ-------LGRQTVYAPGW 140
Query: 307 RAKFSIANFAEKYKLGEP 324
R F+ +FAE Y LG P
Sbjct: 141 RQNFNTKDFAELYNLGSP 158
>pdb|1WKP|A Chain A, Flowering Locus T (Ft) From Arabidopsis Thaliana
pdb|1WKP|B Chain B, Flowering Locus T (Ft) From Arabidopsis Thaliana
pdb|1WKP|C Chain C, Flowering Locus T (Ft) From Arabidopsis Thaliana
pdb|1WKP|D Chain D, Flowering Locus T (Ft) From Arabidopsis Thaliana
Length = 171
Score = 65.5 bits (158), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 72/161 (44%), Gaps = 18/161 (11%)
Query: 24 RTAQGKVEYPGGVSVNLGNVLTPTQVKDQPTVTWNA-DPNQSYVLCMTVNHPIPDPDAPS 82
R+ KV Y G V G L P+QV+++P V D Y L M DPD PS
Sbjct: 27 RSITLKVTY-GQREVTNGLNLRPSQVQNKPRVEIGGEDLRNFYTLVMV------DPDVPS 79
Query: 83 RKEHTYREWHHWLVGNIKGGKLDGADFLSAYVG-AGPPPNTGLHRYVFLVYKQPNSITFD 141
RE+ HWLV +I G F + V P P G+HR VF++++Q
Sbjct: 80 PSNPHLREYLHWLVTDIPATT--GTTFGNEIVSYENPSPTAGIHRVVFILFRQ------- 130
Query: 142 EARLPNNSQDGRAKFSIANFAEKYKLGEPIAVNFFQAEYDD 182
R + R F+ FAE Y LG P+A F+ ++ +
Sbjct: 131 LGRQTVYAPGWRQNFNTREFAEIYNLGLPVAAVFYNSQRES 171
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 60/139 (43%), Gaps = 17/139 (12%)
Query: 188 GGVSVNLGNVLTPTQVKDQPTVTWNA-DPNQSYVLCMTVNHPIPDPDAPSRKEHTYREWH 246
G V G L P+QV+++P V D Y L M DPD PS RE+
Sbjct: 36 GQREVTNGLNLRPSQVQNKPRVEIGGEDLRNFYTLVMV------DPDVPSPSNPHLREYL 89
Query: 247 HWLVGNIKGGKLDGADFLSAYVG-AGPPPNTGLHRYVFLVYKQPNSITFDEARLPNNSQD 305
HWLV +I G F + V P P G+HR VF++++Q R +
Sbjct: 90 HWLVTDIPATT--GTTFGNEIVSYENPSPTAGIHRVVFILFRQ-------LGRQTVYAPG 140
Query: 306 GRAKFSIANFAEKYKLGEP 324
R F+ FAE Y LG P
Sbjct: 141 WRQNFNTREFAEIYNLGLP 159
>pdb|1WKO|A Chain A, Terminal Flower 1 (Tfl1) From Arabidopsis Thaliana
pdb|1WKO|B Chain B, Terminal Flower 1 (Tfl1) From Arabidopsis Thaliana
Length = 180
Score = 64.3 bits (155), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 71/145 (48%), Gaps = 14/145 (9%)
Query: 38 VNLGNVLTPTQVKDQPTVTWNADPNQSYVLCMTVNHPIPDPDAPSRKEHTYREWHHWLVG 97
V+ G+ L P+ V +P V + +S+ + ++ +P P P KEH HW+V
Sbjct: 43 VSNGHELFPSSVSSKPRVEIHGGDLRSFFTLVMIDPDVPGPSDPFLKEHL-----HWIVT 97
Query: 98 NIKGGKLDGADFLSAYVG-AGPPPNTGLHRYVFLVYKQPNSITFDEARLPNNSQDGRAKF 156
NI G A F V P P+ G+HR+VF++++Q + R+ + R F
Sbjct: 98 NIPGTT--DATFGKEVVSYELPRPSIGIHRFVFVLFRQ------KQRRVIFPNIPSRDHF 149
Query: 157 SIANFAEKYKLGEPIAVNFFQAEYD 181
+ FA +Y LG P+A FF A+ +
Sbjct: 150 NTRKFAVEYDLGLPVAAVFFNAQRE 174
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 64/134 (47%), Gaps = 14/134 (10%)
Query: 192 VNLGNVLTPTQVKDQPTVTWNADPNQSYVLCMTVNHPIPDPDAPSRKEHTYREWHHWLVG 251
V+ G+ L P+ V +P V + +S+ + ++ +P P P KEH HW+V
Sbjct: 43 VSNGHELFPSSVSSKPRVEIHGGDLRSFFTLVMIDPDVPGPSDPFLKEHL-----HWIVT 97
Query: 252 NIKGGKLDGADFLSAYVG-AGPPPNTGLHRYVFLVYKQPNSITFDEARLPNNSQDGRAKF 310
NI G A F V P P+ G+HR+VF++++Q + R+ + R F
Sbjct: 98 NIPGTT--DATFGKEVVSYELPRPSIGIHRFVFVLFRQ------KQRRVIFPNIPSRDHF 149
Query: 311 SIANFAEKYKLGEP 324
+ FA +Y LG P
Sbjct: 150 NTRKFAVEYDLGLP 163
>pdb|1WPX|B Chain B, Crystal Structure Of Carboxypeptidase Y Inhibitor
Complexed With The Cognate Proteinase
Length = 220
Score = 61.6 bits (148), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 83/187 (44%), Gaps = 44/187 (23%)
Query: 30 VEYPGGVSVNLGNVLTPTQVKDQPTV--TWNADPNQS--------------YVLCMTVNH 73
VEY V +GN L + + +P T+N +S + L MT
Sbjct: 39 VEYSSSAPVAMGNTLPTEKARSKPQFQFTFNKQMQKSVPQANAYVPQDDDLFTLVMT--- 95
Query: 74 PIPDPDAPSRKEHTYREWHHWLVGNIK---------GGKLD---------GADFLSAYVG 115
DPDAPS+ +H + E+ H + ++K G + G++ L Y+G
Sbjct: 96 ---DPDAPSKTDHKWSEFCHLVECDLKLLNEATHETSGATEFFASEFNTKGSNTLIEYMG 152
Query: 116 AGPPPNTGLHRYVFLVYKQP---NSITFDEARLPNNSQDGRAKFSIANFAEKYKLGEPIA 172
PP +G HRYVFL+YKQP +S F + + N G + +A++ L + +A
Sbjct: 153 PAPPKGSGPHRYVFLLYKQPKGVDSSKFSKIKDRPNWGYGTPATGVGKWAKENNL-QLVA 211
Query: 173 VNFFQAE 179
NFF AE
Sbjct: 212 SNFFYAE 218
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 75/173 (43%), Gaps = 40/173 (23%)
Query: 154 AKFSIANFAEKYKLGEPIAVNFFQAEYDDYVEYPGGVSVNLGNVLTPTQVKDQPTV--TW 211
A+ SI ++ + L + I FQ VEY V +GN L + + +P T+
Sbjct: 9 AQASIDSYKKHGILEDVIHDTSFQPSGILAVEYSSSAPVAMGNTLPTEKARSKPQFQFTF 68
Query: 212 NADPNQS--------------YVLCMTVNHPIPDPDAPSRKEHTYREWHHWLVGNIK--- 254
N +S + L MT DPDAPS+ +H + E+ H + ++K
Sbjct: 69 NKQMQKSVPQANAYVPQDDDLFTLVMT------DPDAPSKTDHKWSEFCHLVECDLKLLN 122
Query: 255 ------GGKLD---------GADFLSAYVGAGPPPNTGLHRYVFLVYKQPNSI 292
G + G++ L Y+G PP +G HRYVFL+YKQP +
Sbjct: 123 EATHETSGATEFFASEFNTKGSNTLIEYMGPAPPKGSGPHRYVFLLYKQPKGV 175
>pdb|1QOU|A Chain A, Cen (Centroradialis) Protein From Antirrhinum
pdb|1QOU|B Chain B, Cen (Centroradialis) Protein From Antirrhinum
Length = 181
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 66/144 (45%), Gaps = 16/144 (11%)
Query: 41 GNVLTPTQVKDQPTV-TWNADPNQSYVLCMTVNHPIPDPDAPSRKEHTYREWHHWLVGNI 99
G+ L P+ V P V D + L MT DPD P + RE HW+V +I
Sbjct: 45 GHELFPSAVTSTPRVEVHGGDMRSFFTLIMT------DPDVPGPSDPYLREHLHWIVTDI 98
Query: 100 KGGKLDGADFLSAYVGAGPPPNTGLHRYVFLVYKQPNSITFDEARL--PNNSQDGRAKFS 157
G D + P PN G+HR+VFL++KQ +A L P +DG F+
Sbjct: 99 PG-TTDSSFGKEVVSYEMPRPNIGIHRFVFLLFKQKKR---GQAMLSPPVVCRDG---FN 151
Query: 158 IANFAEKYKLGEPIAVNFFQAEYD 181
F ++ +LG P+A FF + +
Sbjct: 152 TRKFTQENELGLPVAAVFFNCQRE 175
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 60/133 (45%), Gaps = 16/133 (12%)
Query: 195 GNVLTPTQVKDQPTV-TWNADPNQSYVLCMTVNHPIPDPDAPSRKEHTYREWHHWLVGNI 253
G+ L P+ V P V D + L MT DPD P + RE HW+V +I
Sbjct: 45 GHELFPSAVTSTPRVEVHGGDMRSFFTLIMT------DPDVPGPSDPYLREHLHWIVTDI 98
Query: 254 KGGKLDGADFLSAYVGAGPPPNTGLHRYVFLVYKQPNSITFDEARL--PNNSQDGRAKFS 311
G D + P PN G+HR+VFL++KQ +A L P +DG F+
Sbjct: 99 PG-TTDSSFGKEVVSYEMPRPNIGIHRFVFLLFKQKKR---GQAMLSPPVVCRDG---FN 151
Query: 312 IANFAEKYKLGEP 324
F ++ +LG P
Sbjct: 152 TRKFTQENELGLP 164
>pdb|2GZQ|A Chain A, Phosphatidylethanolamine-Binding Protein From Plasmodium
Vivax
Length = 200
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 51/111 (45%), Gaps = 10/111 (9%)
Query: 181 DDYVEYPGGVSVNLGNVLTPTQVKDQP-TVTWNADPNQSYVLCMTVNHPIPDPDAPSRKE 239
D Y+ + G VN GN+L P + ++ +P + Y + DPD PSR+
Sbjct: 38 DXYISFKSGKEVNHGNILDLAGTGSVPRNIKFSEEPPEDYCYILFX----IDPDFPSRRR 93
Query: 240 HTYREWHHWLVGNIKGGKL-DGAD----FLSAYVGAGPPPNTGLHRYVFLV 285
R++ HW V IK +L G D L YVG TGLHR F++
Sbjct: 94 PDGRDYVHWAVSGIKSKELVKGTDKNCITLLPYVGPSIKKGTGLHRISFIL 144
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 50/113 (44%), Gaps = 10/113 (8%)
Query: 25 TAQGKVEYPGGVSVNLGNVLTPTQVKDQP-TVTWNADPNQSYVLCMTVNHPIPDPDAPSR 83
T + + G VN GN+L P + ++ +P + Y + DPD PSR
Sbjct: 36 TVDXYISFKSGKEVNHGNILDLAGTGSVPRNIKFSEEPPEDYCYILFX----IDPDFPSR 91
Query: 84 KEHTYREWHHWLVGNIKGGKL-DGAD----FLSAYVGAGPPPNTGLHRYVFLV 131
+ R++ HW V IK +L G D L YVG TGLHR F++
Sbjct: 92 RRPDGRDYVHWAVSGIKSKELVKGTDKNCITLLPYVGPSIKKGTGLHRISFIL 144
>pdb|2R77|A Chain A, Crystal Structure Of Phosphatidylethanolamine-Binding
Protein, Pfl0955c, From Plasmodium Falciparum
Length = 205
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 49/111 (44%), Gaps = 10/111 (9%)
Query: 181 DDYVEYPGGVSVNLGNVLTPTQVKDQP-TVTWNADPNQSYVLCMTVNHPIPDPDAPSRKE 239
D ++ + G VN GNVL P + ++ +P Y + + DPD PSR
Sbjct: 45 DLFISFKAGKEVNHGNVLDIAGTGSVPRNIKFSEEPPDGYCFVLF----MVDPDYPSRLR 100
Query: 240 HTYREWHHWLVGNIKGGKL-----DGADFLSAYVGAGPPPNTGLHRYVFLV 285
+E+ HW+V IK +L + YVG TGLHR F++
Sbjct: 101 PDGKEYIHWVVSGIKTKELIKGTQKNCVTILPYVGPSIKKGTGLHRISFII 151
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 47/108 (43%), Gaps = 10/108 (9%)
Query: 30 VEYPGGVSVNLGNVLTPTQVKDQP-TVTWNADPNQSYVLCMTVNHPIPDPDAPSRKEHTY 88
+ + G VN GNVL P + ++ +P Y + + DPD PSR
Sbjct: 48 ISFKAGKEVNHGNVLDIAGTGSVPRNIKFSEEPPDGYCFVLF----MVDPDYPSRLRPDG 103
Query: 89 REWHHWLVGNIKGGKL-----DGADFLSAYVGAGPPPNTGLHRYVFLV 131
+E+ HW+V IK +L + YVG TGLHR F++
Sbjct: 104 KEYIHWVVSGIKTKELIKGTQKNCVTILPYVGPSIKKGTGLHRISFII 151
>pdb|2VN4|A Chain A, Glycoside Hydrolase Family 15 Glucoamylase From Hypocrea
Jecorina
pdb|2VN7|A Chain A, Glycoside Hydrolase Family 15 Glucoamylase From Hypocrea
Jecorina
Length = 599
Score = 32.0 bits (71), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 41/105 (39%), Gaps = 20/105 (19%)
Query: 124 LHRYVFLVYKQPNSITFDEARLPNNSQDGRAKFSIANFAEKYKLGEPIAVNFFQAEYDDY 183
H V + Q + + A L N S N+A+ + P+ + E D
Sbjct: 501 FHELVSTQFGQTVKVAGNAAALGNWSTSAAVALDAVNYADNH----PLWIGTVNLEAGDV 556
Query: 184 VEYPGGVSVNLGNVLTPTQVKDQPTVTWNADPNQSY----VLCMT 224
VEY +N+G +VTW +DPN +Y V C+T
Sbjct: 557 VEYK---YINVGQ---------DGSVTWESDPNHTYTVPAVACVT 589
>pdb|3LML|A Chain A, Crystal Structure Of The Sheath Tail Protein Lin1278 From
Listeria Innocua, Northeast Structural Genomics
Consortium Target Lkr115
pdb|3LML|B Chain B, Crystal Structure Of The Sheath Tail Protein Lin1278 From
Listeria Innocua, Northeast Structural Genomics
Consortium Target Lkr115
pdb|3LML|C Chain C, Crystal Structure Of The Sheath Tail Protein Lin1278 From
Listeria Innocua, Northeast Structural Genomics
Consortium Target Lkr115
pdb|3LML|D Chain D, Crystal Structure Of The Sheath Tail Protein Lin1278 From
Listeria Innocua, Northeast Structural Genomics
Consortium Target Lkr115
pdb|3LML|E Chain E, Crystal Structure Of The Sheath Tail Protein Lin1278 From
Listeria Innocua, Northeast Structural Genomics
Consortium Target Lkr115
pdb|3LML|F Chain F, Crystal Structure Of The Sheath Tail Protein Lin1278 From
Listeria Innocua, Northeast Structural Genomics
Consortium Target Lkr115
Length = 460
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 46/112 (41%), Gaps = 11/112 (9%)
Query: 111 SAYVGAGPPPNTGLHRYVFLVYKQPNSITFDEARLPNNSQDGRAKFSIANFAEKYKLGEP 170
+ VG P T L FLV + FD P +S D K S +F ++ + +
Sbjct: 178 TTLVGGTDQPVTNLDYTQFLVSAEGEY--FDTIAFPVSSSDVALKTSFVSFVKRXRDEQG 235
Query: 171 IAVNFFQA----EYDDYVEYPGGVSVNLGNVLTPTQVKDQPTVTWNADPNQS 218
+ + A +Y+ + GV++ G +L P QV V W A + S
Sbjct: 236 VKIKGVVANXPADYEGIINVRNGVTLRDGTILEPHQV-----VAWVAGADAS 282
>pdb|3TKB|A Chain A, Crystal Structure Of Human Uracil-Dna Glycosylase
D183gK302R MUTANT
Length = 223
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 39/83 (46%), Gaps = 14/83 (16%)
Query: 42 NVLTPTQ---VKDQPTVTWNADP----NQSYVLCMTVNHPIPDPDAPSRKEHTYREWHHW 94
V T TQ +KD V DP NQ++ LC +V P+P P PS E+ Y+E
Sbjct: 43 QVFTWTQMCDIKDVKVVILGQDPYHGPNQAHGLCFSVQRPVPPP--PSL-ENIYKE---- 95
Query: 95 LVGNIKGGKLDGADFLSAYVGAG 117
L +I+G G LS + G
Sbjct: 96 LSTDIEGFVHPGHGDLSGWAKQG 118
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 39/83 (46%), Gaps = 14/83 (16%)
Query: 196 NVLTPTQ---VKDQPTVTWNADP----NQSYVLCMTVNHPIPDPDAPSRKEHTYREWHHW 248
V T TQ +KD V DP NQ++ LC +V P+P P PS E+ Y+E
Sbjct: 43 QVFTWTQMCDIKDVKVVILGQDPYHGPNQAHGLCFSVQRPVPPP--PSL-ENIYKE---- 95
Query: 249 LVGNIKGGKLDGADFLSAYVGAG 271
L +I+G G LS + G
Sbjct: 96 LSTDIEGFVHPGHGDLSGWAKQG 118
>pdb|2SSP|E Chain E, Leucine-272-Alanine Uracil-Dna Glycosylase Bound To
Abasic Site-Containing Dna
Length = 223
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 10/56 (17%)
Query: 42 NVLTPTQ---VKDQPTVTWNADP----NQSYVLCMTVNHPIPDPDAPSRKEHTYRE 90
V T TQ +KD V DP NQ++ LC +V P+P P PS E+ Y+E
Sbjct: 43 QVFTWTQMCDIKDVKVVILGQDPYHGPNQAHGLCFSVQRPVPPP--PSL-ENIYKE 95
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 10/56 (17%)
Query: 196 NVLTPTQ---VKDQPTVTWNADP----NQSYVLCMTVNHPIPDPDAPSRKEHTYRE 244
V T TQ +KD V DP NQ++ LC +V P+P P PS E+ Y+E
Sbjct: 43 QVFTWTQMCDIKDVKVVILGQDPYHGPNQAHGLCFSVQRPVPPP--PSL-ENIYKE 95
>pdb|1UGH|E Chain E, Crystal Structure Of Human Uracil-Dna Glycosylase In
Complex With A Protein Inhibitor: Protein Mimicry Of
Dna
pdb|1SSP|E Chain E, Wild-Type Uracil-Dna Glycosylase Bound To
Uracil-Containing Dna
pdb|1EMH|A Chain A, Crystal Structure Of Human Uracil-Dna Glycosylase Bound
To Uncleaved Substrate-Containing Dna
pdb|1EMJ|A Chain A, Uracil-Dna Glycosylase Bound To Dna Containing A
4'-Thio- 2'deoxyuridine Analog Product
pdb|1Q3F|A Chain A, Uracil Dna Glycosylase Bound To A Cationic 1-Aza-2'-
Deoxyribose-Contianing Dna
pdb|2HXM|A Chain A, Complex Of Ung2 And A Small Molecule Synthetic Inhibitor
pdb|1AKZ|A Chain A, Human Uracil-Dna Glycosylase
pdb|2OXM|A Chain A, Crystal Structure Of A Ung2MODIFIED DNA COMPLEX THAT
Represent A Stabilized Short-Lived Extrahelical State
In Ezymatic Dna Base Flipping
pdb|2OYT|A Chain A, Crystal Structure Of Ung2DNA(TM)
pdb|3FCF|A Chain A, Complex Of Ung2 And A Fragment-Based Designed Inhibitor
pdb|3FCI|A Chain A, Complex Of Ung2 And A Fragment-Based Designed Inhibitor
pdb|3FCK|B Chain B, Complex Of Ung2 And A Fragment-Based Design Inhibitor
pdb|3FCL|A Chain A, Complex Of Ung2 And A Fragment-Based Designed Inhibitor
pdb|3FCL|B Chain B, Complex Of Ung2 And A Fragment-Based Designed Inhibitor
Length = 223
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 10/56 (17%)
Query: 42 NVLTPTQ---VKDQPTVTWNADP----NQSYVLCMTVNHPIPDPDAPSRKEHTYRE 90
V T TQ +KD V DP NQ++ LC +V P+P P PS E+ Y+E
Sbjct: 43 QVFTWTQMCDIKDVKVVILGQDPYHGPNQAHGLCFSVQRPVPPP--PSL-ENIYKE 95
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 10/56 (17%)
Query: 196 NVLTPTQ---VKDQPTVTWNADP----NQSYVLCMTVNHPIPDPDAPSRKEHTYRE 244
V T TQ +KD V DP NQ++ LC +V P+P P PS E+ Y+E
Sbjct: 43 QVFTWTQMCDIKDVKVVILGQDPYHGPNQAHGLCFSVQRPVPPP--PSL-ENIYKE 95
>pdb|1YUO|A Chain A, Optimisation Of The Surface Electrostatics As A Strategy
For Cold Adaptation Of Uracil-Dna N-Glycosylase
(Ung)from Atlantic Cod (Gadus Morhua)
Length = 223
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 7/44 (15%)
Query: 42 NVLTPTQ---VKDQPTVTWNADP----NQSYVLCMTVNHPIPDP 78
V T TQ +KD V DP NQ++ LC +V P+P P
Sbjct: 43 QVFTWTQMCDIKDVKVVILGQDPYHGPNQAHGLCFSVQRPVPPP 86
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 7/44 (15%)
Query: 196 NVLTPTQ---VKDQPTVTWNADP----NQSYVLCMTVNHPIPDP 232
V T TQ +KD V DP NQ++ LC +V P+P P
Sbjct: 43 QVFTWTQMCDIKDVKVVILGQDPYHGPNQAHGLCFSVQRPVPPP 86
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.136 0.429
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,947,115
Number of Sequences: 62578
Number of extensions: 626565
Number of successful extensions: 1433
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 1341
Number of HSP's gapped (non-prelim): 58
length of query: 343
length of database: 14,973,337
effective HSP length: 100
effective length of query: 243
effective length of database: 8,715,537
effective search space: 2117875491
effective search space used: 2117875491
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)