Query psy14207
Match_columns 343
No_of_seqs 244 out of 2467
Neff 6.9
Searched_HMMs 46136
Date Fri Aug 16 22:11:17 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14207.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14207hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3346|consensus 100.0 9.9E-44 2.1E-48 313.4 14.6 176 1-188 1-179 (185)
2 PLN00169 CETS family protein; 100.0 5.8E-40 1.3E-44 289.8 16.3 169 1-186 2-172 (175)
3 KOG3346|consensus 100.0 2.5E-39 5.3E-44 285.5 11.9 141 186-337 31-174 (185)
4 PLN00169 CETS family protein; 100.0 9E-34 1.9E-38 250.5 14.7 133 190-337 35-169 (175)
5 cd00866 PEBP_euk PhosphatidylE 100.0 6.5E-33 1.4E-37 240.6 14.9 138 189-332 10-154 (154)
6 cd00866 PEBP_euk PhosphatidylE 100.0 1.1E-32 2.3E-37 239.3 15.7 146 27-178 2-154 (154)
7 PF01161 PBP: Phosphatidyletha 99.9 2E-24 4.3E-29 185.7 11.8 131 26-177 2-146 (146)
8 PF01161 PBP: Phosphatidyletha 99.9 1.6E-24 3.4E-29 186.3 11.2 122 189-331 11-146 (146)
9 cd00457 PEBP PhosphatidylEthan 99.9 4.4E-22 9.6E-27 174.0 11.7 123 191-331 6-158 (159)
10 cd00457 PEBP PhosphatidylEthan 99.8 7.5E-20 1.6E-24 159.9 12.0 123 37-177 6-158 (159)
11 PRK09818 putative kinase inhib 99.6 9.6E-16 2.1E-20 136.4 10.0 93 192-295 29-154 (183)
12 PRK10257 putative kinase inhib 99.6 1.7E-15 3.7E-20 132.0 10.3 79 205-295 30-131 (158)
13 cd00865 PEBP_bact_arch Phospha 99.6 4.5E-15 9.8E-20 128.5 9.3 91 204-318 25-135 (150)
14 COG1881 Phospholipid-binding p 99.6 1E-14 2.3E-19 128.6 9.2 91 189-291 27-140 (174)
15 PRK09818 putative kinase inhib 99.6 1.8E-14 4E-19 128.2 10.5 101 26-140 20-153 (183)
16 PRK10257 putative kinase inhib 99.5 2.7E-14 5.9E-19 124.4 10.4 93 37-141 7-131 (158)
17 cd00865 PEBP_bact_arch Phospha 99.5 4.2E-14 9.2E-19 122.5 11.0 105 38-166 7-137 (150)
18 TIGR00481 Raf kinase inhibitor 99.5 2.9E-14 6.4E-19 122.2 9.2 77 205-294 14-114 (141)
19 COG1881 Phospholipid-binding p 99.5 7E-14 1.5E-18 123.4 8.5 91 36-138 28-141 (174)
20 TIGR00481 Raf kinase inhibitor 99.4 1.5E-12 3.2E-17 111.7 10.4 91 51-166 14-128 (141)
21 PHA02146 hypothetical protein 23.7 84 0.0018 23.8 2.6 32 310-343 12-43 (86)
No 1
>KOG3346|consensus
Probab=100.00 E-value=9.9e-44 Score=313.44 Aligned_cols=176 Identities=47% Similarity=0.831 Sum_probs=164.3
Q ss_pred ChhHHHhhhCCCcccCCCCCCcCCceeEEEEeCCCcccCCCceeCcccccCCCeEEEe--cCCCCcEEEEEEeCCCCCCC
Q psy14207 1 MVDVAGKTEGARSYPRCHQNSALRTAQGKVEYPGGVSVNLGNVLTPTQVKDQPTVTWN--ADPNQSYVLCMTVNHPIPDP 78 (343)
Q Consensus 1 ~~~~~~~~~~~~i~p~~l~~~f~p~~~L~V~y~~~~~v~~G~~l~~~~t~~~P~i~~~--~~~~~~ytlvmv~~~~~~Dp 78 (343)
|.++.+.+.+.+|++|++. .+.|++.|+|+|+++..|++|+.|+++.++++|.|+|. ++++++|||+|+ ||
T Consensus 1 ~~~~~~~~~~~~iv~Dvl~-~~~p~~~l~V~y~~~~~v~~G~~l~pt~~~~~P~v~~~~~a~~~~~yTLvm~------DP 73 (185)
T KOG3346|consen 1 MSDIRDPLNKHRIVPDVLD-DFEPSVKLNVTYNSDIVVENGNELTPTQVKNRPIVSWDGFADPGSLYTLVMT------DP 73 (185)
T ss_pred CcchhhhhhccCcchhhhc-cCCCceEEEEEeCCCeeecCCCEeCchhhccCCeEEEcCcCCCCCeEEEEEe------CC
Confidence 6788899999999999996 46899999999998889999999999999999999999 578899999999 99
Q ss_pred CCCCCCCCCCcceEEEEEeeecCCC-CCCCcccccccCCCCCCCCCCccEEEEEeecCCCcccccCCCCCCCcCCCccch
Q psy14207 79 DAPSRKEHTYREWHHWLVGNIKGGK-LDGADFLSAYVGAGPPPNTGLHRYVFLVYKQPNSITFDEARLPNNSQDGRAKFS 157 (343)
Q Consensus 79 Dap~~~~~~~~~~lHwl~~ni~~~~-~~~g~~~~~Y~~P~Pp~g~g~HRYvfllf~q~~~~~~~~~~l~~~~~~~r~~Fn 157 (343)
|||+++++++++|||||++|||+++ +++|++++.|++|.||+|+|.|||+|+||+|+++.+..+. ....|++|+
T Consensus 74 DaPsr~~p~~rE~lHWlV~nIPg~~~~~~G~~i~~Y~~P~Pp~~tG~HRyVfll~rQ~~~~~~~~~-----~~~~R~~F~ 148 (185)
T KOG3346|consen 74 DAPSRSDPKFREWLHWLVTNIPGTDGISKGQEISEYLGPGPPKGTGLHRYVFLLYRQPGRLDSDEP-----SPLSRGNFN 148 (185)
T ss_pred CCCCCCCCcceeEEEEEEEeecCCccccCCeEeeeeeCCCCCCCCCceEEEEEEEEcCCccccccC-----CCCccccee
Confidence 9999999999999999999999997 9999999999999999999999999999999999877543 347999999
Q ss_pred HHHHHHHhcCCcccceeeeeeecCCCccccC
Q psy14207 158 IANFAEKYKLGEPIAVNFFQAEYDDYVEYPG 188 (343)
Q Consensus 158 v~~F~~~~gL~~pVa~~~f~~~~d~~V~~~~ 188 (343)
+++|+.+++|+.|||++||+++||+.++...
T Consensus 149 ~~~F~~~~~lg~PvA~~~f~aq~d~~~~~~~ 179 (185)
T KOG3346|consen 149 TRKFAKKYELGTPVAGNFFQAQWDDYVPKLY 179 (185)
T ss_pred HHHHHHHhccCCchhhheehhhcchhhHHHH
Confidence 9999999999999999999999999887543
No 2
>PLN00169 CETS family protein; Provisional
Probab=100.00 E-value=5.8e-40 Score=289.84 Aligned_cols=169 Identities=30% Similarity=0.459 Sum_probs=152.5
Q ss_pred ChhHHHhhhCCCcccCCCCCCcCCceeEEEEeCCCcccCCCceeCcccccCCCeEEEec-CCCCcEEEEEEeCCCCCCCC
Q psy14207 1 MVDVAGKTEGARSYPRCHQNSALRTAQGKVEYPGGVSVNLGNVLTPTQVKDQPTVTWNA-DPNQSYVLCMTVNHPIPDPD 79 (343)
Q Consensus 1 ~~~~~~~~~~~~i~p~~l~~~f~p~~~L~V~y~~~~~v~~G~~l~~~~t~~~P~i~~~~-~~~~~ytlvmv~~~~~~DpD 79 (343)
|.+|++++.+++||||+++ .|.|+..|+|+|++ ..|.+|+.|++++++++|+|+|.+ +.+++|||+|+ |||
T Consensus 2 ~~~~~~~l~~~~iipdvid-~f~P~~~L~V~y~s-~~V~~G~~l~p~~t~~~P~i~~~~~~~~~~ytlim~------DpD 73 (175)
T PLN00169 2 SPRDRDPLVVGRVVGDVLD-PFTRSISLRVTYGS-REVNNGCELKPSQVVNQPRVDIGGEDLRTFYTLVMV------DPD 73 (175)
T ss_pred CcccccchhhCCcCCcccC-CcCCceEEEEEECC-cCcCCcCCCCHHHhccCCEEEEccCCCCceeEEEEE------CCC
Confidence 5689999999999999996 49999999999987 689999999999999999999985 44689999999 999
Q ss_pred CCCCCCCCCcceEEEEEeeecCCC-CCCCcccccccCCCCCCCCCCccEEEEEeecCCCcccccCCCCCCCcCCCccchH
Q psy14207 80 APSRKEHTYREWHHWLVGNIKGGK-LDGADFLSAYVGAGPPPNTGLHRYVFLVYKQPNSITFDEARLPNNSQDGRAKFSI 158 (343)
Q Consensus 80 ap~~~~~~~~~~lHwl~~ni~~~~-~~~g~~~~~Y~~P~Pp~g~g~HRYvfllf~q~~~~~~~~~~l~~~~~~~r~~Fnv 158 (343)
+|++.++++++||||++.||+++. ...|+.+++|+||.|+ +|+|||+|+||+|++.+++. ...+|.+||+
T Consensus 74 aP~~~~~~~~~~~HW~v~nip~~~~~~~g~~~~~Y~~P~Pp--~G~HRYvflly~Q~~~~~~~-------~~~~R~~F~~ 144 (175)
T PLN00169 74 APSPSNPNLREYLHWLVTDIPATTGATFGQEVVCYESPRPT--AGIHRFVFVLFRQLGRQTVY-------APGWRQNFNT 144 (175)
T ss_pred CCCCCCCCcccEEEEEEeCCccccccccCccceeecCCCCC--CCceeEEEEEEEcCCCcccC-------CcccCCCcCH
Confidence 999999999999999999999874 4678999999999998 47999999999999876542 2357999999
Q ss_pred HHHHHHhcCCcccceeeeeeecCCCccc
Q psy14207 159 ANFAEKYKLGEPIAVNFFQAEYDDYVEY 186 (343)
Q Consensus 159 ~~F~~~~gL~~pVa~~~f~~~~d~~V~~ 186 (343)
++|+++++|+.|||+|||+++|++.++.
T Consensus 145 ~~Fa~~~~L~~PvA~nfF~a~~~~~~~~ 172 (175)
T PLN00169 145 RDFAELYNLGSPVAAVYFNCQRESGSGG 172 (175)
T ss_pred HHHHHHhCCCCceEEEEEEEecCCcCCc
Confidence 9999999999999999999999987653
No 3
>KOG3346|consensus
Probab=100.00 E-value=2.5e-39 Score=285.54 Aligned_cols=141 Identities=48% Similarity=0.884 Sum_probs=131.0
Q ss_pred ccCcccccCCCccCchhhccCCccccc--CCCCcEEEEEEeeCCCCCCCCCCCCCCCCccceeEEEEEecCCCc-cCCCc
Q psy14207 186 YPGGVSVNLGNVLTPTQVKDQPTVTWN--ADPNQSYVLCMTVNHPIPDPDAPSRKEHTYREWHHWLVGNIKGGK-LDGAD 262 (343)
Q Consensus 186 ~~~~~~v~~G~~l~~~~~~~~P~~~~~--~~~~~~y~l~m~~~~~~~DpD~p~~~~~~~~~~~Hwl~~ni~~~~-~~~g~ 262 (343)
+.++..|.+|++|++++++.+|+|+|. ++.++.|||+|+ |||||+++++++++|||||+.|||++. ++.|+
T Consensus 31 y~~~~~v~~G~~l~pt~~~~~P~v~~~~~a~~~~~yTLvm~------DPDaPsr~~p~~rE~lHWlV~nIPg~~~~~~G~ 104 (185)
T KOG3346|consen 31 YNSDIVVENGNELTPTQVKNRPIVSWDGFADPGSLYTLVMT------DPDAPSRSDPKFREWLHWLVTNIPGTDGISKGQ 104 (185)
T ss_pred eCCCeeecCCCEeCchhhccCCeEEEcCcCCCCCeEEEEEe------CCCCCCCCCCcceeEEEEEEEeecCCccccCCe
Confidence 334578999999999999999999999 588999999999 999999999999999999999999998 89999
Q ss_pred eeecccCCCCCCCCCCceEEEEEEeeCCCCCCCCcCCCCCCcCCCCCcCHHHHHHHcCCCCceEEEEEEEecCCC
Q psy14207 263 FLSAYVGAGPPPNTGLHRYVFLVYKQPNSITFDEARLPNNSQDGRAKFSIANFAEKYKLGEPKKICKVRVRFPPE 337 (343)
Q Consensus 263 ~~~~Y~~P~P~~g~g~HRYvf~l~~q~~~~~~~~~~~~~~~~~~R~~F~~~~F~~~~~L~~pva~~~f~~~~~~~ 337 (343)
+++.|+||.||+|+|.|||||+||+|+.++++.+. ....|.+|++++|+++++||.||||+||+.+||+.
T Consensus 105 ~i~~Y~~P~Pp~~tG~HRyVfll~rQ~~~~~~~~~-----~~~~R~~F~~~~F~~~~~lg~PvA~~~f~aq~d~~ 174 (185)
T KOG3346|consen 105 EISEYLGPGPPKGTGLHRYVFLLYRQPGRLDSDEP-----SPLSRGNFNTRKFAKKYELGTPVAGNFFQAQWDDY 174 (185)
T ss_pred EeeeeeCCCCCCCCCceEEEEEEEEcCCccccccC-----CCCcccceeHHHHHHHhccCCchhhheehhhcchh
Confidence 99999999999999999999999999998877543 23689999999999999999999999999999974
No 4
>PLN00169 CETS family protein; Provisional
Probab=100.00 E-value=9e-34 Score=250.46 Aligned_cols=133 Identities=34% Similarity=0.539 Sum_probs=119.4
Q ss_pred ccccCCCccCchhhccCCcccccC-CCCcEEEEEEeeCCCCCCCCCCCCCCCCccceeEEEEEecCCCcc-CCCceeecc
Q psy14207 190 VSVNLGNVLTPTQVKDQPTVTWNA-DPNQSYVLCMTVNHPIPDPDAPSRKEHTYREWHHWLVGNIKGGKL-DGADFLSAY 267 (343)
Q Consensus 190 ~~v~~G~~l~~~~~~~~P~~~~~~-~~~~~y~l~m~~~~~~~DpD~p~~~~~~~~~~~Hwl~~ni~~~~~-~~g~~~~~Y 267 (343)
..|.+|+.|++++++.+|+|+|.+ +.+++|||+|+ |||+|++.++.+++|+||++.||+.+.. ..|+.+++|
T Consensus 35 ~~V~~G~~l~p~~t~~~P~i~~~~~~~~~~ytlim~------DpDaP~~~~~~~~~~~HW~v~nip~~~~~~~g~~~~~Y 108 (175)
T PLN00169 35 REVNNGCELKPSQVVNQPRVDIGGEDLRTFYTLVMV------DPDAPSPSNPNLREYLHWLVTDIPATTGATFGQEVVCY 108 (175)
T ss_pred cCcCCcCCCCHHHhccCCEEEEccCCCCceeEEEEE------CCCCCCCCCCCcccEEEEEEeCCccccccccCccceee
Confidence 468999999999999999999985 55789999999 9999999999999999999999998753 578899999
Q ss_pred cCCCCCCCCCCceEEEEEEeeCCCCCCCCcCCCCCCcCCCCCcCHHHHHHHcCCCCceEEEEEEEecCCC
Q psy14207 268 VGAGPPPNTGLHRYVFLVYKQPNSITFDEARLPNNSQDGRAKFSIANFAEKYKLGEPKKICKVRVRFPPE 337 (343)
Q Consensus 268 ~~P~P~~g~g~HRYvf~l~~q~~~~~~~~~~~~~~~~~~R~~F~~~~F~~~~~L~~pva~~~f~~~~~~~ 337 (343)
.||.|+. |+|||+|+||+|++.+++. ...+|.+||+++|++++||+.|||||||+++++..
T Consensus 109 ~~P~Pp~--G~HRYvflly~Q~~~~~~~-------~~~~R~~F~~~~Fa~~~~L~~PvA~nfF~a~~~~~ 169 (175)
T PLN00169 109 ESPRPTA--GIHRFVFVLFRQLGRQTVY-------APGWRQNFNTRDFAELYNLGSPVAAVYFNCQRESG 169 (175)
T ss_pred cCCCCCC--CceeEEEEEEEcCCCcccC-------CcccCCCcCHHHHHHHhCCCCceEEEEEEEecCCc
Confidence 9999984 6999999999999876432 23579999999999999999999999999999983
No 5
>cd00866 PEBP_euk PhosphatidylEthanolamine-Binding Protein (PEBP) domain present in eukaryotes. PhosphatidylEthanolamine-Binding Proteins (PEBPs) are represented in all three major phylogenetic divisions (eukaryotes, bacteria, archaea). The members in this subgroup are present in eukaryotes. Members here include those in plants such as Arabidopsis thaliana FLOWERING LOCUS (FT) and TERMINAL FLOWER1 (FT1) which function as a promoter and a repressor of the floral transitions, respectively as well as the mammalian Raf kinase inhibitory protein (RKIP) which inhibits MAP kinase (Raf-MEK-ERK), G protein-coupled receptor (GPCR) kinase and NFkappaB signaling cascades. Although their overall structures are similar, the members of the PEBP family have very different substrates and oligomerization states (monomer/dimer/tetramer).
Probab=100.00 E-value=6.5e-33 Score=240.60 Aligned_cols=138 Identities=45% Similarity=0.861 Sum_probs=124.2
Q ss_pred cccccCCCccCchhhccCCcccccCC--CCcEEEEEEeeCCCCCCCCCCCCCCCCccceeEEEEEecCCCc-----cCCC
Q psy14207 189 GVSVNLGNVLTPTQVKDQPTVTWNAD--PNQSYVLCMTVNHPIPDPDAPSRKEHTYREWHHWLVGNIKGGK-----LDGA 261 (343)
Q Consensus 189 ~~~v~~G~~l~~~~~~~~P~~~~~~~--~~~~y~l~m~~~~~~~DpD~p~~~~~~~~~~~Hwl~~ni~~~~-----~~~g 261 (343)
...+.+|+.|++++++.+|+|+|... .+++|+|+|+ |||+|.+.++.++++||||+.||+.+. ...|
T Consensus 10 ~~~v~~G~~l~~~~~~~~P~i~~~~~~~~~~~y~lvm~------DpD~p~~~~~~~~~~lHwl~~ni~~~~~~~~~~~~~ 83 (154)
T cd00866 10 SGVVTPGNLLTPSETQKAPTVSFSSEDPPDKLYTLVMV------DPDAPSRDDPKFREWLHWLVTNIPGSDTTTGLVSKG 83 (154)
T ss_pred CcCcCCCCCCCHHHhCcCCeEEEecCCCCCCeEEEEEE------CCCCCCCCCCCCCCEEEEEEeCcCCccccccccCCC
Confidence 35789999999999999999999873 5899999999 999999998899999999999999876 3467
Q ss_pred ceeecccCCCCCCCCCCceEEEEEEeeCCCCCCCCcCCCCCCcCCCCCcCHHHHHHHcCCCCceEEEEEEE
Q psy14207 262 DFLSAYVGAGPPPNTGLHRYVFLVYKQPNSITFDEARLPNNSQDGRAKFSIANFAEKYKLGEPKKICKVRV 332 (343)
Q Consensus 262 ~~~~~Y~~P~P~~g~g~HRYvf~l~~q~~~~~~~~~~~~~~~~~~R~~F~~~~F~~~~~L~~pva~~~f~~ 332 (343)
..+++|.||.|++|+|+|||+|+||+|++.+++...........+|.+||+++|++++||+.|||+|||++
T Consensus 84 ~~~~~Y~~P~Pp~g~g~HRY~fll~~q~~~~~~~~~~~~~~~~~~r~~F~~~~F~~~~~L~~pva~~~f~~ 154 (154)
T cd00866 84 EVLVPYLGPGPPKGTGPHRYVFLLFKQPGGLDFPESKLPPTSGLGRRGFDVREFAKKNGLGLPVAANFFQV 154 (154)
T ss_pred CCcceeeCCCCCCCCCCccEEEEEEEeCCccCccccccccCCccccCCcCHHHHHHHhCCCCcEEEEEEeC
Confidence 88999999999999999999999999999888766544334568899999999999999999999999985
No 6
>cd00866 PEBP_euk PhosphatidylEthanolamine-Binding Protein (PEBP) domain present in eukaryotes. PhosphatidylEthanolamine-Binding Proteins (PEBPs) are represented in all three major phylogenetic divisions (eukaryotes, bacteria, archaea). The members in this subgroup are present in eukaryotes. Members here include those in plants such as Arabidopsis thaliana FLOWERING LOCUS (FT) and TERMINAL FLOWER1 (FT1) which function as a promoter and a repressor of the floral transitions, respectively as well as the mammalian Raf kinase inhibitory protein (RKIP) which inhibits MAP kinase (Raf-MEK-ERK), G protein-coupled receptor (GPCR) kinase and NFkappaB signaling cascades. Although their overall structures are similar, the members of the PEBP family have very different substrates and oligomerization states (monomer/dimer/tetramer).
Probab=100.00 E-value=1.1e-32 Score=239.31 Aligned_cols=146 Identities=46% Similarity=0.877 Sum_probs=131.5
Q ss_pred eEEEEeCCCcccCCCceeCcccccCCCeEEEecCC--CCcEEEEEEeCCCCCCCCCCCCCCCCCcceEEEEEeeecCCC-
Q psy14207 27 QGKVEYPGGVSVNLGNVLTPTQVKDQPTVTWNADP--NQSYVLCMTVNHPIPDPDAPSRKEHTYREWHHWLVGNIKGGK- 103 (343)
Q Consensus 27 ~L~V~y~~~~~v~~G~~l~~~~t~~~P~i~~~~~~--~~~ytlvmv~~~~~~DpDap~~~~~~~~~~lHwl~~ni~~~~- 103 (343)
.|.|+|+++..+.+|+.|++++++.+|+|+|.... +++|+|+|+ |||+|.+.++..+++||||++||+.+.
T Consensus 2 ~l~v~y~~~~~v~~G~~l~~~~~~~~P~i~~~~~~~~~~~y~lvm~------DpD~p~~~~~~~~~~lHwl~~ni~~~~~ 75 (154)
T cd00866 2 DLTVSYGSSGVVTPGNLLTPSETQKAPTVSFSSEDPPDKLYTLVMV------DPDAPSRDDPKFREWLHWLVTNIPGSDT 75 (154)
T ss_pred eEEEEECCCcCcCCCCCCCHHHhCcCCeEEEecCCCCCCeEEEEEE------CCCCCCCCCCCCCCEEEEEEeCcCCccc
Confidence 68999997668999999999999999999998755 699999999 999999999999999999999999874
Q ss_pred ----CCCCcccccccCCCCCCCCCCccEEEEEeecCCCcccccCCCCCCCcCCCccchHHHHHHHhcCCcccceeeeee
Q psy14207 104 ----LDGADFLSAYVGAGPPPNTGLHRYVFLVYKQPNSITFDEARLPNNSQDGRAKFSIANFAEKYKLGEPIAVNFFQA 178 (343)
Q Consensus 104 ----~~~g~~~~~Y~~P~Pp~g~g~HRYvfllf~q~~~~~~~~~~l~~~~~~~r~~Fnv~~F~~~~gL~~pVa~~~f~~ 178 (343)
...+..+++|+||.|+.|+|+|||+|+||+|++.+++............|.+||+++|++++||+.|||++||++
T Consensus 76 ~~~~~~~~~~~~~Y~~P~Pp~g~g~HRY~fll~~q~~~~~~~~~~~~~~~~~~r~~F~~~~F~~~~~L~~pva~~~f~~ 154 (154)
T cd00866 76 TTGLVSKGEVLVPYLGPGPPKGTGPHRYVFLLFKQPGGLDFPESKLPPTSGLGRRGFDVREFAKKNGLGLPVAANFFQV 154 (154)
T ss_pred cccccCCCCCcceeeCCCCCCCCCCccEEEEEEEeCCccCccccccccCCccccCCcCHHHHHHHhCCCCcEEEEEEeC
Confidence 456889999999999999999999999999999988765433234678999999999999999998899999975
No 7
>PF01161 PBP: Phosphatidylethanolamine-binding protein; InterPro: IPR008914 The PEBP (PhosphatidylEthanolamine-Binding Protein) family is a highly conserved group of proteins that have been identified in numerous tissues in a wide variety of organisms, including bacteria, yeast, nematodes, plants, drosophila and mammals. The various functions described for members of this family include lipid binding, neuronal development [], serine protease inhibition [], the control of the morphological switch between shoot growth and flower structures [], and the regulation of several signalling pathways such as the MAP kinase pathway [], and the NF-kappaB pathway []. The control of the latter two pathways involves the PEBP protein RKIP, which interacts with MEK and Raf-1 to inhibit the MAP kinase pathway, and with TAK1, NIK, IKKalpha and IKKbeta to inhibit the NF-kappaB pathway. Other PEBP-like proteins that show strong structural homology to PEBP include Escherichia coli YBHB and YBCL, the Rattus norvegicus (Rat) neuropeptide HCNP, and Antirrhinum majus (Garden snapdragon) protein centroradialis (CEN). Structures have been determined for several members of the PEBP-like family, all of which show extensive fold conservation. The structure consists of a large central beta-sheet flanked by a smaller beta-sheet on one side, and an alpha helix on the other. Sequence alignments show two conserved central regions, CR1 and CR2, that form a consensus signature for the PEBP family. These two regions form part of the ligand-binding site, which can accommodate various anionic groups. The N- and C-terminal regions are the least conserved, and may be involved in interactions with different protein partners. The N-terminal residues 2-12 form the natural cleavage peptide HCNP involved in neuronal development. The C-terminal region is deleted in plant and bacterial PEBP homologues, and may help control accessibility to the active site. ; PDB: 1BD9_A 1BEH_A 2QYQ_A 2L7W_A 3AXY_A 2IQX_C 2IQY_A 1KN3_A 1FUX_A 1B7A_A ....
Probab=99.91 E-value=2e-24 Score=185.70 Aligned_cols=131 Identities=38% Similarity=0.747 Sum_probs=107.1
Q ss_pred eeEEEEeCCCcccCCCceeCccc-ccCCCeEEEecCCCCcEEEEEEeCCCCCCCCCCCCCCCCCcceEEEEEeeec----
Q psy14207 26 AQGKVEYPGGVSVNLGNVLTPTQ-VKDQPTVTWNADPNQSYVLCMTVNHPIPDPDAPSRKEHTYREWHHWLVGNIK---- 100 (343)
Q Consensus 26 ~~L~V~y~~~~~v~~G~~l~~~~-t~~~P~i~~~~~~~~~ytlvmv~~~~~~DpDap~~~~~~~~~~lHwl~~ni~---- 100 (343)
..|.|+|.++..+.+|+.++++. ++..|+ ..++|+|+|+ |||+|.+.+++.+++||||++||+
T Consensus 2 ~~L~v~f~~~~~~~~G~~~sp~~~~~~~P~------~~~~y~lim~------D~D~P~~~~~~~~~~~Hwl~~ni~~~~~ 69 (146)
T PF01161_consen 2 GKLPVKFTGNKSVCPGNNVSPPLSWQNAPT------GTKSYTLIMV------DPDAPSRENPSFGPFLHWLVTNIPSTEL 69 (146)
T ss_dssp CEEEEEECTTEECSTTEEEEGGGECSS-TC------TTSEEEEEEE------ETTSSBTTSCTTTSEEEEEEEEEETSEE
T ss_pred cCcCceeEcccccCCCCCCCcCcccccCCC------CCcEEEEEEE------CCCCCccccCCCCcEEEEEEcCCCCccC
Confidence 57999995447999999999999 889998 6789999999 999999888889999999999999
Q ss_pred -----CC--CCC-CCcccccccCCCCCCCCCCccEEEEEeecCCCcccccCCCCCCCcCCCccchHHHHHHHhcCCcc-c
Q psy14207 101 -----GG--KLD-GADFLSAYVGAGPPPNTGLHRYVFLVYKQPNSITFDEARLPNNSQDGRAKFSIANFAEKYKLGEP-I 171 (343)
Q Consensus 101 -----~~--~~~-~g~~~~~Y~~P~Pp~g~g~HRYvfllf~q~~~~~~~~~~l~~~~~~~r~~Fnv~~F~~~~gL~~p-V 171 (343)
.. .++ .|+.+++|.||+|++|+|.|||+|+||+|++.+.+. .....+++++.+++++|+.+ +
T Consensus 70 ~~~~~~~~~~~~~~g~~~~~Y~~P~Pp~g~g~HrY~f~ly~q~~~~~l~---------~~~~~~~~~~~~~~~~L~~~~l 140 (146)
T PF01161_consen 70 PEGSDGARQGINSSGQVIAPYLGPCPPKGSGPHRYVFLLYAQPSPLPLS---------DGATKFDLREAFKGHGLGPASL 140 (146)
T ss_dssp -TTSSTCETSBGGTSEEEES--SB-SSTTSSCEEEEEEEEEESSSSTSG---------BSSTHHTHHHHHHHTTEESEES
T ss_pred CCCCCccEecccccCccccEEcCCcCcCcCCCceEEEEEEEcCCCCCCC---------CCCCHHHHHHHHHcCCCCCceE
Confidence 10 122 266789999999999999999999999999965542 23335788888899999877 8
Q ss_pred ceeeee
Q psy14207 172 AVNFFQ 177 (343)
Q Consensus 172 a~~~f~ 177 (343)
+++||+
T Consensus 141 ~~~y~r 146 (146)
T PF01161_consen 141 AGNYFR 146 (146)
T ss_dssp EEEEEE
T ss_pred EEEEEC
Confidence 999986
No 8
>PF01161 PBP: Phosphatidylethanolamine-binding protein; InterPro: IPR008914 The PEBP (PhosphatidylEthanolamine-Binding Protein) family is a highly conserved group of proteins that have been identified in numerous tissues in a wide variety of organisms, including bacteria, yeast, nematodes, plants, drosophila and mammals. The various functions described for members of this family include lipid binding, neuronal development [], serine protease inhibition [], the control of the morphological switch between shoot growth and flower structures [], and the regulation of several signalling pathways such as the MAP kinase pathway [], and the NF-kappaB pathway []. The control of the latter two pathways involves the PEBP protein RKIP, which interacts with MEK and Raf-1 to inhibit the MAP kinase pathway, and with TAK1, NIK, IKKalpha and IKKbeta to inhibit the NF-kappaB pathway. Other PEBP-like proteins that show strong structural homology to PEBP include Escherichia coli YBHB and YBCL, the Rattus norvegicus (Rat) neuropeptide HCNP, and Antirrhinum majus (Garden snapdragon) protein centroradialis (CEN). Structures have been determined for several members of the PEBP-like family, all of which show extensive fold conservation. The structure consists of a large central beta-sheet flanked by a smaller beta-sheet on one side, and an alpha helix on the other. Sequence alignments show two conserved central regions, CR1 and CR2, that form a consensus signature for the PEBP family. These two regions form part of the ligand-binding site, which can accommodate various anionic groups. The N- and C-terminal regions are the least conserved, and may be involved in interactions with different protein partners. The N-terminal residues 2-12 form the natural cleavage peptide HCNP involved in neuronal development. The C-terminal region is deleted in plant and bacterial PEBP homologues, and may help control accessibility to the active site. ; PDB: 1BD9_A 1BEH_A 2QYQ_A 2L7W_A 3AXY_A 2IQX_C 2IQY_A 1KN3_A 1FUX_A 1B7A_A ....
Probab=99.91 E-value=1.6e-24 Score=186.31 Aligned_cols=122 Identities=38% Similarity=0.688 Sum_probs=98.9
Q ss_pred cccccCCCccCchh-hccCCcccccCCCCcEEEEEEeeCCCCCCCCCCCCCCCCccceeEEEEEecC---------C--C
Q psy14207 189 GVSVNLGNVLTPTQ-VKDQPTVTWNADPNQSYVLCMTVNHPIPDPDAPSRKEHTYREWHHWLVGNIK---------G--G 256 (343)
Q Consensus 189 ~~~v~~G~~l~~~~-~~~~P~~~~~~~~~~~y~l~m~~~~~~~DpD~p~~~~~~~~~~~Hwl~~ni~---------~--~ 256 (343)
+..+++|+.+++.. ++..|+ ++++|+|+|+ |+|+|.+.++..++++|||++||+ . .
T Consensus 11 ~~~~~~G~~~sp~~~~~~~P~------~~~~y~lim~------D~D~P~~~~~~~~~~~Hwl~~ni~~~~~~~~~~~~~~ 78 (146)
T PF01161_consen 11 NKSVCPGNNVSPPLSWQNAPT------GTKSYTLIMV------DPDAPSRENPSFGPFLHWLVTNIPSTELPEGSDGARQ 78 (146)
T ss_dssp TEECSTTEEEEGGGECSS-TC------TTSEEEEEEE------ETTSSBTTSCTTTSEEEEEEEEEETSEE-TTSSTCET
T ss_pred ccccCCCCCCCcCcccccCCC------CCcEEEEEEE------CCCCCccccCCCCcEEEEEEcCCCCccCCCCCCccEe
Confidence 46789999998888 777777 6789999999 999999888899999999999999 1 0
Q ss_pred cc-CCCceeecccCCCCCCCCCCceEEEEEEeeCCCCCCCCcCCCCCCcCCCCCcCHHHHHHHcCCCCc-eEEEEEE
Q psy14207 257 KL-DGADFLSAYVGAGPPPNTGLHRYVFLVYKQPNSITFDEARLPNNSQDGRAKFSIANFAEKYKLGEP-KKICKVR 331 (343)
Q Consensus 257 ~~-~~g~~~~~Y~~P~P~~g~g~HRYvf~l~~q~~~~~~~~~~~~~~~~~~R~~F~~~~F~~~~~L~~p-va~~~f~ 331 (343)
.+ +.|+.+++|.||+|++|+|.|||+|+||+|++.+.++ .....++++.+.++++|+.+ +||+|||
T Consensus 79 ~~~~~g~~~~~Y~~P~Pp~g~g~HrY~f~ly~q~~~~~l~---------~~~~~~~~~~~~~~~~L~~~~l~~~y~r 146 (146)
T PF01161_consen 79 GINSSGQVIAPYLGPCPPKGSGPHRYVFLLYAQPSPLPLS---------DGATKFDLREAFKGHGLGPASLAGNYFR 146 (146)
T ss_dssp SBGGTSEEEES--SB-SSTTSSCEEEEEEEEEESSSSTSG---------BSSTHHTHHHHHHHTTEESEESEEEEEE
T ss_pred cccccCccccEEcCCcCcCcCCCceEEEEEEEcCCCCCCC---------CCCCHHHHHHHHHcCCCCCceEEEEEEC
Confidence 11 2366789999999999999999999999999855441 23345788899999999988 9999997
No 9
>cd00457 PEBP PhosphatidylEthanolamine-Binding Protein (PEBP) domain. PhosphatidylEthanolamine-Binding Proteins (PEBPs) are represented in all three major phylogenetic divisions (eukaryotes, bacteria, archaea). A number of biological roles for members of the PEBP family include serine protease inhibition, membrane biogenesis, regulation of flowering plant stem architecture, and Raf-1 kinase inhibition. Although their overall structures are similar, the members of the PEBP family bind very different substrates including phospholipids, opioids, and hydrophobic odorant molecules as well as having different oligomerization states (monomer/dimer/tetramer).
Probab=99.87 E-value=4.4e-22 Score=174.00 Aligned_cols=123 Identities=37% Similarity=0.545 Sum_probs=99.6
Q ss_pred cccC-CCccCc----hhhccCCcccccC--CCCcEEEEEEeeCCCCCCCCCCCCCCCCccceeEEEEEecCCCcc--CC-
Q psy14207 191 SVNL-GNVLTP----TQVKDQPTVTWNA--DPNQSYVLCMTVNHPIPDPDAPSRKEHTYREWHHWLVGNIKGGKL--DG- 260 (343)
Q Consensus 191 ~v~~-G~~l~~----~~~~~~P~~~~~~--~~~~~y~l~m~~~~~~~DpD~p~~~~~~~~~~~Hwl~~ni~~~~~--~~- 260 (343)
.+.. |+.|++ .....+|.|+|+. +++++|+|+|+ |||+|. .++|+||+++||+.+.. ..
T Consensus 6 ~~~~~g~~lp~~~~~~g~~~sP~l~w~~~p~~t~s~ali~~------DpDap~-----~~~~~HWvv~nIp~~~~~~~~~ 74 (159)
T cd00457 6 EVGPSGSVLPPEYSFEGVGRFPSLSWDGPPPDVKEYVLVME------DPDAPL-----GRPIVHGLVYGIPANKTSLSND 74 (159)
T ss_pred CcCCCCCccChhhccCCCCcCCceEecCCCCCCeEEEEEEE------CCCCCC-----CCCceEEEEeccCccccccccc
Confidence 3556 888888 7777899999987 36889999999 999984 34699999999998652 11
Q ss_pred ----------Cc----------eeecccCCCCCCCCCCceEEEEEEeeCCCCCCCCcCCCCCCcCCCCCcCHHHHHHHcC
Q psy14207 261 ----------AD----------FLSAYVGAGPPPNTGLHRYVFLVYKQPNSITFDEARLPNNSQDGRAKFSIANFAEKYK 320 (343)
Q Consensus 261 ----------g~----------~~~~Y~~P~P~~g~g~HRYvf~l~~q~~~~~~~~~~~~~~~~~~R~~F~~~~F~~~~~ 320 (343)
+. ....|.||+||+|+|.|||+|+||+|+..+.+.+ ....|..|++++|+++|.
T Consensus 75 ~~~~~~~~~~~~~~~n~~g~~~~~~~Y~GP~PP~G~g~HrY~f~lyald~~~~~~~------~~~~~~~~~~~~~~~~~v 148 (159)
T cd00457 75 DFVVTDNGKGGLQGGFKYGKNRGGTVYIGPRPPLGHGPHRYFFQVYALDEPLDRSK------LGDGRTKFEVARFAEGNV 148 (159)
T ss_pred ccccCCCCccceeccccccccCCCcCCcCCCCCCCCCCeeEEEEEEEecCcccccc------ccCCCCHHHHHHHHHhCe
Confidence 11 1349999999999999999999999998765431 124788999999999999
Q ss_pred CCCceEEEEEE
Q psy14207 321 LGEPKKICKVR 331 (343)
Q Consensus 321 L~~pva~~~f~ 331 (343)
|+ ++|.++++
T Consensus 149 L~-~~a~~~~~ 158 (159)
T cd00457 149 LG-AVGEWVGQ 158 (159)
T ss_pred ee-EEEEEEEE
Confidence 97 78998876
No 10
>cd00457 PEBP PhosphatidylEthanolamine-Binding Protein (PEBP) domain. PhosphatidylEthanolamine-Binding Proteins (PEBPs) are represented in all three major phylogenetic divisions (eukaryotes, bacteria, archaea). A number of biological roles for members of the PEBP family include serine protease inhibition, membrane biogenesis, regulation of flowering plant stem architecture, and Raf-1 kinase inhibition. Although their overall structures are similar, the members of the PEBP family bind very different substrates including phospholipids, opioids, and hydrophobic odorant molecules as well as having different oligomerization states (monomer/dimer/tetramer).
Probab=99.82 E-value=7.5e-20 Score=159.93 Aligned_cols=123 Identities=39% Similarity=0.605 Sum_probs=97.6
Q ss_pred ccCC-CceeCc----ccccCCCeEEEecCC--CCcEEEEEEeCCCCCCCCCCCCCCCCCcceEEEEEeeecCCC--CCC-
Q psy14207 37 SVNL-GNVLTP----TQVKDQPTVTWNADP--NQSYVLCMTVNHPIPDPDAPSRKEHTYREWHHWLVGNIKGGK--LDG- 106 (343)
Q Consensus 37 ~v~~-G~~l~~----~~t~~~P~i~~~~~~--~~~ytlvmv~~~~~~DpDap~~~~~~~~~~lHwl~~ni~~~~--~~~- 106 (343)
.+.. |+.|+. ......|.|+|+..+ .++|+|+|+ |||+|.. ++|+||++.||+.+. +.+
T Consensus 6 ~~~~~g~~lp~~~~~~g~~~sP~l~w~~~p~~t~s~ali~~------DpDap~~-----~~~~HWvv~nIp~~~~~~~~~ 74 (159)
T cd00457 6 EVGPSGSVLPPEYSFEGVGRFPSLSWDGPPPDVKEYVLVME------DPDAPLG-----RPIVHGLVYGIPANKTSLSND 74 (159)
T ss_pred CcCCCCCccChhhccCCCCcCCceEecCCCCCCeEEEEEEE------CCCCCCC-----CCceEEEEeccCccccccccc
Confidence 4666 888888 566669999998754 589999999 9999843 589999999999763 211
Q ss_pred ----------Cc----------ccccccCCCCCCCCCCccEEEEEeecCCCcccccCCCCCCCcCCCccchHHHHHHHhc
Q psy14207 107 ----------AD----------FLSAYVGAGPPPNTGLHRYVFLVYKQPNSITFDEARLPNNSQDGRAKFSIANFAEKYK 166 (343)
Q Consensus 107 ----------g~----------~~~~Y~~P~Pp~g~g~HRYvfllf~q~~~~~~~~~~l~~~~~~~r~~Fnv~~F~~~~g 166 (343)
+. ..+.|.||+||.|+|.|||+|+||+|+..+.... ...+|..+++++|++.+.
T Consensus 75 ~~~~~~~~~~~~~~~n~~g~~~~~~~Y~GP~PP~G~g~HrY~f~lyald~~~~~~~------~~~~~~~~~~~~~~~~~v 148 (159)
T cd00457 75 DFVVTDNGKGGLQGGFKYGKNRGGTVYIGPRPPLGHGPHRYFFQVYALDEPLDRSK------LGDGRTKFEVARFAEGNV 148 (159)
T ss_pred ccccCCCCccceeccccccccCCCcCCcCCCCCCCCCCeeEEEEEEEecCcccccc------ccCCCCHHHHHHHHHhCe
Confidence 11 2349999999999999999999999998776431 125788899999999999
Q ss_pred CCcccceeeee
Q psy14207 167 LGEPIAVNFFQ 177 (343)
Q Consensus 167 L~~pVa~~~f~ 177 (343)
|+ ++|..++.
T Consensus 149 L~-~~a~~~~~ 158 (159)
T cd00457 149 LG-AVGEWVGQ 158 (159)
T ss_pred ee-EEEEEEEE
Confidence 96 67777664
No 11
>PRK09818 putative kinase inhibitor; Provisional
Probab=99.64 E-value=9.6e-16 Score=136.40 Aligned_cols=93 Identities=32% Similarity=0.665 Sum_probs=71.1
Q ss_pred ccCCCccCchhh---------ccCCcccccC--CCCcEEEEEEeeCCCCCCCCCCCCCCCCccceeEEEEEecCCCc--c
Q psy14207 192 VNLGNVLTPTQV---------KDQPTVTWNA--DPNQSYVLCMTVNHPIPDPDAPSRKEHTYREWHHWLVGNIKGGK--L 258 (343)
Q Consensus 192 v~~G~~l~~~~~---------~~~P~~~~~~--~~~~~y~l~m~~~~~~~DpD~p~~~~~~~~~~~Hwl~~ni~~~~--~ 258 (343)
+..|..|+...+ ..+|.|+|+. +++++|+|+|. |||+|... .|+||+++|||.+. +
T Consensus 29 f~~G~~ip~~~~~~~~~~~G~n~SP~L~W~~~P~gtks~aLi~~------DpDaP~g~-----~~~HWvv~nIP~~~~~l 97 (183)
T PRK09818 29 IKTGEQLTTSHVFSGFGCEGGNTSPSLTWSGAPEGTKSFAVTVY------DPDAPTGS-----GWWHWTVANIPATVTYL 97 (183)
T ss_pred ccCcCCCCHHHcccccCCCCCCcceeEEEccCCCCcEEEEEEEE------CCCCCCCC-----cEEEEEEEcCCCCcccc
Confidence 445666665432 2589999996 56799999999 99998743 49999999999753 2
Q ss_pred CC------------Cc-------eeecccCCCCCCCCCCceEEEEEEeeC-CCCCCC
Q psy14207 259 DG------------AD-------FLSAYVGAGPPPNTGLHRYVFLVYKQP-NSITFD 295 (343)
Q Consensus 259 ~~------------g~-------~~~~Y~~P~P~~g~g~HRYvf~l~~q~-~~~~~~ 295 (343)
.+ |. ....|.||+||.|+|.|||+|.||+++ +.+.++
T Consensus 98 ~eg~~~~~~~~~~~g~~~g~N~~g~~gY~GP~PP~G~g~HrY~F~vyALd~~~l~l~ 154 (183)
T PRK09818 98 PADAGRRDGTKLPTGAVQGRNDFGYAGFGGACPPKGDKPHHYQFKVWALKTDKIPVD 154 (183)
T ss_pred CCCCcccccccCCCCCEEeecCCCCCceECCCCccCCCCEEEEEEEEEecCcccCCC
Confidence 11 11 246899999999999999999999998 555543
No 12
>PRK10257 putative kinase inhibitor protein; Provisional
Probab=99.63 E-value=1.7e-15 Score=131.98 Aligned_cols=79 Identities=34% Similarity=0.665 Sum_probs=64.1
Q ss_pred cCCcccccC--CCCcEEEEEEeeCCCCCCCCCCCCCCCCccceeEEEEEecCCCc--cCC-----------Cc-------
Q psy14207 205 DQPTVTWNA--DPNQSYVLCMTVNHPIPDPDAPSRKEHTYREWHHWLVGNIKGGK--LDG-----------AD------- 262 (343)
Q Consensus 205 ~~P~~~~~~--~~~~~y~l~m~~~~~~~DpD~p~~~~~~~~~~~Hwl~~ni~~~~--~~~-----------g~------- 262 (343)
.+|.|+|+. +++++|+|+|. |||+|... .|+||+++|||.+. +.+ |.
T Consensus 30 ~SP~L~w~~~P~~t~s~ali~~------DpDap~~~-----~~~HWvv~nIP~~~~~l~eg~~~~~~~~p~g~~~g~n~~ 98 (158)
T PRK10257 30 ISPHLAWDDVPAGTKSFVVTCY------DPDAPTGS-----GWWHWVVVNLPADTRVLPQGFGSGLVALPDGVLQTRTDF 98 (158)
T ss_pred CCceEEEcCCCCCceEEEEEEE------CCCCCCCC-----cEEEEEEEcCCCCcccccCCCCcccccCCCCceeccccC
Confidence 489999987 56799999999 99998643 49999999999753 221 21
Q ss_pred eeecccCCCCCCCCCCceEEEEEEeeC-CCCCCC
Q psy14207 263 FLSAYVGAGPPPNTGLHRYVFLVYKQP-NSITFD 295 (343)
Q Consensus 263 ~~~~Y~~P~P~~g~g~HRYvf~l~~q~-~~~~~~ 295 (343)
....|.||+||.|+ .|||+|.||+++ ..++++
T Consensus 99 g~~gY~GP~PP~g~-~HrY~f~vyALd~~~L~l~ 131 (158)
T PRK10257 99 GKAGYGGAAPPKGE-THRYIFTVHALDVERIDVD 131 (158)
T ss_pred CCccCcCCCCccCC-CceEEEEEEEecCcccCCC
Confidence 24689999999998 699999999999 567664
No 13
>cd00865 PEBP_bact_arch PhosphatidylEthanolamine-Binding Protein (PEBP) domain present in bacteria and archaea. PhosphatidylEthanolamine-Binding Proteins (PEBPs) are represented in all three major phylogenetic divisions (eukaryotes, bacteria, archaea). The members in this subgroup are present in bacterial and archaea. Members here include Escherichia coli YBHB and YBCL which are thought to regulate protein phosphorylation as well as Sulfolobus solfataricus SsCEI which inhibits serine proteases alpha-chymotrypsin and elastase. Although their overall structures are similar, the members of the PEBP family have very different substrates and oligomerization states (monomer/dimer/tetramer). In a few of the bacterial members present here the dimerization interface is proposed to form the ligand binding site, unlike in other PEBP members.
Probab=99.59 E-value=4.5e-15 Score=128.53 Aligned_cols=91 Identities=31% Similarity=0.523 Sum_probs=71.6
Q ss_pred ccCCcccccC--CCCcEEEEEEeeCCCCCCCCCCCCCCCCccceeEEEEEecCCC--ccCCCc----------------e
Q psy14207 204 KDQPTVTWNA--DPNQSYVLCMTVNHPIPDPDAPSRKEHTYREWHHWLVGNIKGG--KLDGAD----------------F 263 (343)
Q Consensus 204 ~~~P~~~~~~--~~~~~y~l~m~~~~~~~DpD~p~~~~~~~~~~~Hwl~~ni~~~--~~~~g~----------------~ 263 (343)
..+|.|+|+. +++++|+|+|+ |+|+|. ..+++||+++||+.+ .+..|. .
T Consensus 25 ~~SP~l~w~~~p~~t~s~al~m~------D~Dap~-----~~~~~HW~~~nIp~~~~~i~~g~~~~~~~~~~~~g~n~~~ 93 (150)
T cd00865 25 NVSPPLSWSGVPAGTKSLALIVE------DPDAPT-----GGGFVHWVVWNIPADTTELPEGASRGALPAGAVQGRNDFG 93 (150)
T ss_pred CcCCCeEEcCCCCCCeEEEEEEE------cCCCCC-----CCCEEEEEEeccCcccccccCCcccccCCCCCeEeecCCC
Confidence 4689999997 46899999999 999983 345999999999986 333322 4
Q ss_pred eecccCCCCCCCCCCceEEEEEEeeCCCCCCCCcCCCCCCcCCCCCcCHHHHHHH
Q psy14207 264 LSAYVGAGPPPNTGLHRYVFLVYKQPNSITFDEARLPNNSQDGRAKFSIANFAEK 318 (343)
Q Consensus 264 ~~~Y~~P~P~~g~g~HRYvf~l~~q~~~~~~~~~~~~~~~~~~R~~F~~~~F~~~ 318 (343)
...|.||+||. ++.|||+|.||+|+..+.++ ..+...++.++
T Consensus 94 ~~~Y~gP~Pp~-~~~HrY~f~vyAld~~l~~~------------~~~~~~~l~~a 135 (150)
T cd00865 94 EAGYGGPCPPD-GGPHRYVFTVYALDVPLLLP------------PGATRAELLFA 135 (150)
T ss_pred CCeecCCCCcC-CCceEEEEEEEEeCCccCCC------------CCCCHHHHHHH
Confidence 68999999999 78999999999999876541 34556666665
No 14
>COG1881 Phospholipid-binding protein [General function prediction only]
Probab=99.56 E-value=1e-14 Score=128.64 Aligned_cols=91 Identities=31% Similarity=0.601 Sum_probs=71.2
Q ss_pred cccccCCCccCchhh----ccCCcccccC--CCCcEEEEEEeeCCCCCCCCCCCCCCCCccceeEEEEEecCCC--ccCC
Q psy14207 189 GVSVNLGNVLTPTQV----KDQPTVTWNA--DPNQSYVLCMTVNHPIPDPDAPSRKEHTYREWHHWLVGNIKGG--KLDG 260 (343)
Q Consensus 189 ~~~v~~G~~l~~~~~----~~~P~~~~~~--~~~~~y~l~m~~~~~~~DpD~p~~~~~~~~~~~Hwl~~ni~~~--~~~~ 260 (343)
...+..|+.++...+ ..+|.|+|+. +++++|+|+|. |||||... .|+||+++||+.. .+..
T Consensus 27 s~~f~~g~~ip~~~t~~g~~~sPpl~ws~~P~~tkS~AL~v~------DpDAP~g~-----~~~HWvv~nIp~~~~~~~~ 95 (174)
T COG1881 27 SNAFADGAPIPDEYTCGGPNISPPLSWSGVPEGTKSFALTVD------DPDAPTGG-----GWVHWVVANIPADVTELPE 95 (174)
T ss_pred chhhhCCCccchhhhcCCCCcCCceeecCCCCCCeeEEEEEE------CCCCCCCC-----cEEEEEEEccCCccccccc
Confidence 445666777766654 4589999996 67899999999 99999744 4999999999973 2211
Q ss_pred C---------------ceeecccCCCCCCCCCCceEEEEEEeeCCC
Q psy14207 261 A---------------DFLSAYVGAGPPPNTGLHRYVFLVYKQPNS 291 (343)
Q Consensus 261 g---------------~~~~~Y~~P~P~~g~g~HRYvf~l~~q~~~ 291 (343)
| -.-..|.||+||.|+| |||.|.||+++-.
T Consensus 96 ~~~~~~~~~~~qg~Nd~g~~~Y~Gp~PP~g~~-HrY~f~vyALd~~ 140 (174)
T COG1881 96 GSGPKSKIGIVQGINDFGSRGYGGPCPPKGHG-HRYYFTVYALDVE 140 (174)
T ss_pred ccccccccceEEeeccccccCcccCCCCCCCC-eEEEEEEEEcccc
Confidence 1 1236699999999999 9999999999853
No 15
>PRK09818 putative kinase inhibitor; Provisional
Probab=99.56 E-value=1.8e-14 Score=128.23 Aligned_cols=101 Identities=32% Similarity=0.599 Sum_probs=78.5
Q ss_pred eeEEEEeCCCcccCCCceeCccccc---------CCCeEEEecCC--CCcEEEEEEeCCCCCCCCCCCCCCCCCcceEEE
Q psy14207 26 AQGKVEYPGGVSVNLGNVLTPTQVK---------DQPTVTWNADP--NQSYVLCMTVNHPIPDPDAPSRKEHTYREWHHW 94 (343)
Q Consensus 26 ~~L~V~y~~~~~v~~G~~l~~~~t~---------~~P~i~~~~~~--~~~ytlvmv~~~~~~DpDap~~~~~~~~~~lHw 94 (343)
..|.|+.+ .+..|..|+.+.+. .+|.|+|...+ .++|+|+|. |||+|.. ..|+||
T Consensus 20 ~~~~ltS~---~f~~G~~ip~~~~~~~~~~~G~n~SP~L~W~~~P~gtks~aLi~~------DpDaP~g-----~~~~HW 85 (183)
T PRK09818 20 AAFQVTSN---EIKTGEQLTTSHVFSGFGCEGGNTSPSLTWSGAPEGTKSFAVTVY------DPDAPTG-----SGWWHW 85 (183)
T ss_pred CcEEEECc---CccCcCCCCHHHcccccCCCCCCcceeEEEccCCCCcEEEEEEEE------CCCCCCC-----CcEEEE
Confidence 34788775 47899999876433 38999998754 488999999 9999864 369999
Q ss_pred EEeeecCC--CCCC------------Cc-------ccccccCCCCCCCCCCccEEEEEeecC-CCccc
Q psy14207 95 LVGNIKGG--KLDG------------AD-------FLSAYVGAGPPPNTGLHRYVFLVYKQP-NSITF 140 (343)
Q Consensus 95 l~~ni~~~--~~~~------------g~-------~~~~Y~~P~Pp~g~g~HRYvfllf~q~-~~~~~ 140 (343)
+++|||.+ .+.+ |. ....|.||+||.|+|.|||+|.||+.+ ..+.+
T Consensus 86 vv~nIP~~~~~l~eg~~~~~~~~~~~g~~~g~N~~g~~gY~GP~PP~G~g~HrY~F~vyALd~~~l~l 153 (183)
T PRK09818 86 TVANIPATVTYLPADAGRRDGTKLPTGAVQGRNDFGYAGFGGACPPKGDKPHHYQFKVWALKTDKIPV 153 (183)
T ss_pred EEEcCCCCccccCCCCcccccccCCCCCEEeecCCCCCceECCCCccCCCCEEEEEEEEEecCcccCC
Confidence 99999875 2221 11 145899999999999999999999997 44554
No 16
>PRK10257 putative kinase inhibitor protein; Provisional
Probab=99.55 E-value=2.7e-14 Score=124.41 Aligned_cols=93 Identities=33% Similarity=0.617 Sum_probs=72.7
Q ss_pred ccCCCceeCccccc---------CCCeEEEecCC--CCcEEEEEEeCCCCCCCCCCCCCCCCCcceEEEEEeeecCC--C
Q psy14207 37 SVNLGNVLTPTQVK---------DQPTVTWNADP--NQSYVLCMTVNHPIPDPDAPSRKEHTYREWHHWLVGNIKGG--K 103 (343)
Q Consensus 37 ~v~~G~~l~~~~t~---------~~P~i~~~~~~--~~~ytlvmv~~~~~~DpDap~~~~~~~~~~lHwl~~ni~~~--~ 103 (343)
.+..|..|+...+. .+|.|+|...+ .++|+|+|. |||+|.. .+|+||++.|||.+ .
T Consensus 7 ~f~~g~~ip~~~~~~~~~~~G~n~SP~L~w~~~P~~t~s~ali~~------DpDap~~-----~~~~HWvv~nIP~~~~~ 75 (158)
T PRK10257 7 DLRDGDKLPHRHVFNGMGYDGDNISPHLAWDDVPAGTKSFVVTCY------DPDAPTG-----SGWWHWVVVNLPADTRV 75 (158)
T ss_pred CccCcCCCCHHHcccccCCCCCCCCceEEEcCCCCCceEEEEEEE------CCCCCCC-----CcEEEEEEEcCCCCccc
Confidence 47778888766554 38999998755 489999999 9999864 47999999999976 2
Q ss_pred CCC-----------Cc-------ccccccCCCCCCCCCCccEEEEEeecC-CCcccc
Q psy14207 104 LDG-----------AD-------FLSAYVGAGPPPNTGLHRYVFLVYKQP-NSITFD 141 (343)
Q Consensus 104 ~~~-----------g~-------~~~~Y~~P~Pp~g~g~HRYvfllf~q~-~~~~~~ 141 (343)
+.+ |. ....|.||+||.|. .|||+|.||+++ ..+.++
T Consensus 76 l~eg~~~~~~~~p~g~~~g~n~~g~~gY~GP~PP~g~-~HrY~f~vyALd~~~L~l~ 131 (158)
T PRK10257 76 LPQGFGSGLVALPDGVLQTRTDFGKAGYGGAAPPKGE-THRYIFTVHALDVERIDVD 131 (158)
T ss_pred ccCCCCcccccCCCCceeccccCCCccCcCCCCccCC-CceEEEEEEEecCcccCCC
Confidence 222 21 14689999999997 699999999998 457654
No 17
>cd00865 PEBP_bact_arch PhosphatidylEthanolamine-Binding Protein (PEBP) domain present in bacteria and archaea. PhosphatidylEthanolamine-Binding Proteins (PEBPs) are represented in all three major phylogenetic divisions (eukaryotes, bacteria, archaea). The members in this subgroup are present in bacterial and archaea. Members here include Escherichia coli YBHB and YBCL which are thought to regulate protein phosphorylation as well as Sulfolobus solfataricus SsCEI which inhibits serine proteases alpha-chymotrypsin and elastase. Although their overall structures are similar, the members of the PEBP family have very different substrates and oligomerization states (monomer/dimer/tetramer). In a few of the bacterial members present here the dimerization interface is proposed to form the ligand binding site, unlike in other PEBP members.
Probab=99.54 E-value=4.2e-14 Score=122.46 Aligned_cols=105 Identities=30% Similarity=0.478 Sum_probs=78.6
Q ss_pred cCCCceeCccc--cc----CCCeEEEecCC--CCcEEEEEEeCCCCCCCCCCCCCCCCCcceEEEEEeeecCC--CCCCC
Q psy14207 38 VNLGNVLTPTQ--VK----DQPTVTWNADP--NQSYVLCMTVNHPIPDPDAPSRKEHTYREWHHWLVGNIKGG--KLDGA 107 (343)
Q Consensus 38 v~~G~~l~~~~--t~----~~P~i~~~~~~--~~~ytlvmv~~~~~~DpDap~~~~~~~~~~lHwl~~ni~~~--~~~~g 107 (343)
+..|..++... +. ..|.|+|...+ .++|+|+|+ |||+|.. .+++||++.||+.. .+.+|
T Consensus 7 ~~~g~~~p~~~~~~~~g~~~SP~l~w~~~p~~t~s~al~m~------D~Dap~~-----~~~~HW~~~nIp~~~~~i~~g 75 (150)
T cd00865 7 FFDGGPIPKKYAFTCDGENVSPPLSWSGVPAGTKSLALIVE------DPDAPTG-----GGFVHWVVWNIPADTTELPEG 75 (150)
T ss_pred ccCcCCCChhhcccCCCCCcCCCeEEcCCCCCCeEEEEEEE------cCCCCCC-----CCEEEEEEeccCcccccccCC
Confidence 44455555555 33 48999998764 589999999 9999832 68999999999986 34333
Q ss_pred c----------------ccccccCCCCCCCCCCccEEEEEeecCCCcccccCCCCCCCcCCCccchHHHHHHHhc
Q psy14207 108 D----------------FLSAYVGAGPPPNTGLHRYVFLVYKQPNSITFDEARLPNNSQDGRAKFSIANFAEKYK 166 (343)
Q Consensus 108 ~----------------~~~~Y~~P~Pp~g~g~HRYvfllf~q~~~~~~~~~~l~~~~~~~r~~Fnv~~F~~~~g 166 (343)
. ....|.||+||. .+.|||+|.||++...+.++ ..+...+++++..
T Consensus 76 ~~~~~~~~~~~~g~n~~~~~~Y~gP~Pp~-~~~HrY~f~vyAld~~l~~~------------~~~~~~~l~~ai~ 137 (150)
T cd00865 76 ASRGALPAGAVQGRNDFGEAGYGGPCPPD-GGPHRYVFTVYALDVPLLLP------------PGATRAELLFAMK 137 (150)
T ss_pred cccccCCCCCeEeecCCCCCeecCCCCcC-CCceEEEEEEEEeCCccCCC------------CCCCHHHHHHHHh
Confidence 2 468999999999 88999999999998876541 2455666666553
No 18
>TIGR00481 Raf kinase inhibitor-like protein, YbhB/YbcL family.
Probab=99.53 E-value=2.9e-14 Score=122.21 Aligned_cols=77 Identities=35% Similarity=0.712 Sum_probs=62.3
Q ss_pred cCCcccccC--CCCcEEEEEEeeCCCCCCCCCCCCCCCCccceeEEEEEecCCCc--cCC-----------Cc-------
Q psy14207 205 DQPTVTWNA--DPNQSYVLCMTVNHPIPDPDAPSRKEHTYREWHHWLVGNIKGGK--LDG-----------AD------- 262 (343)
Q Consensus 205 ~~P~~~~~~--~~~~~y~l~m~~~~~~~DpD~p~~~~~~~~~~~Hwl~~ni~~~~--~~~-----------g~------- 262 (343)
.+|.|+|+. +++++|+|+|+ |+|+|.... |+||+++|||.+. +.+ |.
T Consensus 14 ~SP~l~w~~~P~~t~s~al~~~------D~Dap~~~~-----~~HWv~~nIp~~~~~l~e~~~~~~~~~~~g~~~~g~n~ 82 (141)
T TIGR00481 14 ISPPLSWDGVPEGAKSLALTCI------DPDAPTGCG-----WWHWVVVNIPADTTVLPENASSDDKRLPQGVPLQGRND 82 (141)
T ss_pred CCcEEEEcCCCCCceEEEEEEE------CCCCCCCCC-----eEEEEEecCCCCcccccCCccccccccCCcceeEeecc
Confidence 489999986 56789999999 999987553 9999999999742 211 21
Q ss_pred -eeecccCCCCCCCCCCceEEEEEEeeCCC-CCC
Q psy14207 263 -FLSAYVGAGPPPNTGLHRYVFLVYKQPNS-ITF 294 (343)
Q Consensus 263 -~~~~Y~~P~P~~g~g~HRYvf~l~~q~~~-~~~ 294 (343)
....|.||+||.|+ |||+|.||+++.. +++
T Consensus 83 ~g~~~Y~GP~PP~g~--HrY~f~vyALd~~~l~l 114 (141)
T TIGR00481 83 FGKSGYIGPCPPKGD--HRYLFTVYALDTEKLDL 114 (141)
T ss_pred CCCccEeCCCCcCCC--EEEEEEEEEecCCCCCC
Confidence 24789999999997 9999999999865 654
No 19
>COG1881 Phospholipid-binding protein [General function prediction only]
Probab=99.49 E-value=7e-14 Score=123.39 Aligned_cols=91 Identities=31% Similarity=0.576 Sum_probs=72.4
Q ss_pred cccCCCceeCccccc----CCCeEEEecC--CCCcEEEEEEeCCCCCCCCCCCCCCCCCcceEEEEEeeecCC--CCCCC
Q psy14207 36 VSVNLGNVLTPTQVK----DQPTVTWNAD--PNQSYVLCMTVNHPIPDPDAPSRKEHTYREWHHWLVGNIKGG--KLDGA 107 (343)
Q Consensus 36 ~~v~~G~~l~~~~t~----~~P~i~~~~~--~~~~ytlvmv~~~~~~DpDap~~~~~~~~~~lHwl~~ni~~~--~~~~g 107 (343)
..+..|+.++...|. ..|.++|+.. ..++|+|+|. |||||.. ..|+||++.||+.+ .+.++
T Consensus 28 ~~f~~g~~ip~~~t~~g~~~sPpl~ws~~P~~tkS~AL~v~------DpDAP~g-----~~~~HWvv~nIp~~~~~~~~~ 96 (174)
T COG1881 28 NAFADGAPIPDEYTCGGPNISPPLSWSGVPEGTKSFALTVD------DPDAPTG-----GGWVHWVVANIPADVTELPEG 96 (174)
T ss_pred hhhhCCCccchhhhcCCCCcCCceeecCCCCCCeeEEEEEE------CCCCCCC-----CcEEEEEEEccCCcccccccc
Confidence 478899998887764 3888999864 4589999999 9999974 68999999999973 22111
Q ss_pred ---------------cccccccCCCCCCCCCCccEEEEEeecCCCc
Q psy14207 108 ---------------DFLSAYVGAGPPPNTGLHRYVFLVYKQPNSI 138 (343)
Q Consensus 108 ---------------~~~~~Y~~P~Pp~g~g~HRYvfllf~q~~~~ 138 (343)
-.-..|.||+||.|+| |||.|.||+++-..
T Consensus 97 ~~~~~~~~~~qg~Nd~g~~~Y~Gp~PP~g~~-HrY~f~vyALd~~~ 141 (174)
T COG1881 97 SGPKSKIGIVQGINDFGSRGYGGPCPPKGHG-HRYYFTVYALDVEL 141 (174)
T ss_pred cccccccceEEeeccccccCcccCCCCCCCC-eEEEEEEEEccccc
Confidence 1134599999999999 99999999997643
No 20
>TIGR00481 Raf kinase inhibitor-like protein, YbhB/YbcL family.
Probab=99.41 E-value=1.5e-12 Score=111.73 Aligned_cols=91 Identities=35% Similarity=0.706 Sum_probs=68.2
Q ss_pred CCCeEEEecCC--CCcEEEEEEeCCCCCCCCCCCCCCCCCcceEEEEEeeecCC--CCCC-----------Cc-------
Q psy14207 51 DQPTVTWNADP--NQSYVLCMTVNHPIPDPDAPSRKEHTYREWHHWLVGNIKGG--KLDG-----------AD------- 108 (343)
Q Consensus 51 ~~P~i~~~~~~--~~~ytlvmv~~~~~~DpDap~~~~~~~~~~lHwl~~ni~~~--~~~~-----------g~------- 108 (343)
..|.|+|...+ .++|+|+|. |||+|... .|+||++.|||.+ .+.+ |+
T Consensus 14 ~SP~l~w~~~P~~t~s~al~~~------D~Dap~~~-----~~~HWv~~nIp~~~~~l~e~~~~~~~~~~~g~~~~g~n~ 82 (141)
T TIGR00481 14 ISPPLSWDGVPEGAKSLALTCI------DPDAPTGC-----GWWHWVVVNIPADTTVLPENASSDDKRLPQGVPLQGRND 82 (141)
T ss_pred CCcEEEEcCCCCCceEEEEEEE------CCCCCCCC-----CeEEEEEecCCCCcccccCCccccccccCCcceeEeecc
Confidence 38999998753 489999999 99998653 4999999999974 2221 10
Q ss_pred -ccccccCCCCCCCCCCccEEEEEeecCCC-cccccCCCCCCCcCCCccchHHHHHHHhc
Q psy14207 109 -FLSAYVGAGPPPNTGLHRYVFLVYKQPNS-ITFDEARLPNNSQDGRAKFSIANFAEKYK 166 (343)
Q Consensus 109 -~~~~Y~~P~Pp~g~g~HRYvfllf~q~~~-~~~~~~~l~~~~~~~r~~Fnv~~F~~~~g 166 (343)
....|.||+||.|+ |||+|.||+++.. ++++ .++...++.++..
T Consensus 83 ~g~~~Y~GP~PP~g~--HrY~f~vyALd~~~l~l~------------~~~~~~~l~~ai~ 128 (141)
T TIGR00481 83 FGKSGYIGPCPPKGD--HRYLFTVYALDTEKLDLD------------PGFSLADLGDAME 128 (141)
T ss_pred CCCccEeCCCCcCCC--EEEEEEEEEecCCCCCCC------------CCCCHHHHHHHHh
Confidence 14689999999987 9999999999865 6542 1455566666553
No 21
>PHA02146 hypothetical protein
Probab=23.66 E-value=84 Score=23.76 Aligned_cols=32 Identities=13% Similarity=0.180 Sum_probs=25.8
Q ss_pred cCHHHHHHHcCCCCceEEEEEEEecCCCCCcccC
Q psy14207 310 FSIANFAEKYKLGEPKKICKVRVRFPPEGELYAR 343 (343)
Q Consensus 310 F~~~~F~~~~~L~~pva~~~f~~~~~~~~~~~~~ 343 (343)
-|.+.|.++||+.. +--||....|+.|.+|.|
T Consensus 12 ~da~rf~~ehgi~n--g~ef~v~~~d~dgd~~s~ 43 (86)
T PHA02146 12 TDAERFMAEHGITN--GTEFTVTNIDDDGDLYTY 43 (86)
T ss_pred ccHHHHHHHhCcCC--CcEEEeeccccCCCeEee
Confidence 46788999999984 667777788989988754
Done!