RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy14207
(343 letters)
>gnl|CDD|176644 cd00866, PEBP_euk, PhosphatidylEthanolamine-Binding Protein (PEBP)
domain present in eukaryotes.
PhosphatidylEthanolamine-Binding Proteins (PEBPs) are
represented in all three major phylogenetic divisions
(eukaryotes, bacteria, archaea). The members in this
subgroup are present in eukaryotes. Members here
include those in plants such as Arabidopsis thaliana
FLOWERING LOCUS (FT) and TERMINAL FLOWER1 (FT1) which
function as a promoter and a repressor of the floral
transitions, respectively as well as the mammalian Raf
kinase inhibitory protein (RKIP) which inhibits MAP
kinase (Raf-MEK-ERK), G protein-coupled receptor (GPCR)
kinase and NFkappaB signaling cascades. Although their
overall structures are similar, the members of the PEBP
family have very different substrates and
oligomerization states (monomer/dimer/tetramer).
Length = 154
Score = 178 bits (454), Expect = 8e-56
Identities = 68/157 (43%), Positives = 90/157 (57%), Gaps = 13/157 (8%)
Query: 29 KVEYPGGVSVNLGNVLTPTQVKDQPTVTWNA--DPNQSYVLCMTVNHPIPDPDAPSRKEH 86
V Y V GN+LTP++ + PTV++++ P++ Y L M DPDAPSR +
Sbjct: 4 TVSYGSSGVVTPGNLLTPSETQKAPTVSFSSEDPPDKLYTLVMV------DPDAPSRDDP 57
Query: 87 TYREWHHWLVGNIKGGKLDG-----ADFLSAYVGAGPPPNTGLHRYVFLVYKQPNSITFD 141
+REW HWLV NI G + L Y+G GPP TG HRYVFL++KQP + F
Sbjct: 58 KFREWLHWLVTNIPGSDTTTGLVSKGEVLVPYLGPGPPKGTGPHRYVFLLFKQPGGLDFP 117
Query: 142 EARLPNNSQDGRAKFSIANFAEKYKLGEPIAVNFFQA 178
E++LP S GR F + FA+K LG P+A NFFQ
Sbjct: 118 ESKLPPTSGLGRRGFDVREFAKKNGLGLPVAANFFQV 154
Score = 164 bits (416), Expect = 4e-50
Identities = 63/148 (42%), Positives = 84/148 (56%), Gaps = 13/148 (8%)
Query: 184 VEYPGGVSVNLGNVLTPTQVKDQPTVTWNA--DPNQSYVLCMTVNHPIPDPDAPSRKEHT 241
V Y V GN+LTP++ + PTV++++ P++ Y L M DPDAPSR +
Sbjct: 5 VSYGSSGVVTPGNLLTPSETQKAPTVSFSSEDPPDKLYTLVMV------DPDAPSRDDPK 58
Query: 242 YREWHHWLVGNIKGGKLDG-----ADFLSAYVGAGPPPNTGLHRYVFLVYKQPNSITFDE 296
+REW HWLV NI G + L Y+G GPP TG HRYVFL++KQP + F E
Sbjct: 59 FREWLHWLVTNIPGSDTTTGLVSKGEVLVPYLGPGPPKGTGPHRYVFLLFKQPGGLDFPE 118
Query: 297 ARLPNNSQDGRAKFSIANFAEKYKLGEP 324
++LP S GR F + FA+K LG P
Sbjct: 119 SKLPPTSGLGRRGFDVREFAKKNGLGLP 146
>gnl|CDD|216338 pfam01161, PBP, Phosphatidylethanolamine-binding protein.
Length = 147
Score = 113 bits (285), Expect = 7e-31
Identities = 56/162 (34%), Positives = 71/162 (43%), Gaps = 32/162 (19%)
Query: 29 KVEYPGGVSVNLGNVLTPTQ-VKDQPTVTWNADPNQSYVLCMTVNHPIPDPDAPSRKEHT 87
VEY G V GN L+P D PT+ +D +SY L M DPDAPSR +
Sbjct: 5 PVEYTGAF-VCPGNNLSPPLSWSDAPTI---SDGTKSYALVMV------DPDAPSRSDPK 54
Query: 88 YREWHHWLVGNIKG-----------GKLDGADFLSAYVGAGPPPNTGLHRYVFLVYKQPN 136
E+ HWLV NI G D L+ Y+G PPP TG HRYVFL+Y
Sbjct: 55 GSEFLHWLVTNIPASVTELPGGGVQGVNDFGQTLAGYIGPCPPPGTGPHRYVFLLYALDE 114
Query: 137 SITFDEARLPNNSQDGRAKFSIANFAEKYKLGEP-IAVNFFQ 177
+ + R F + + LG +A NFF+
Sbjct: 115 KLDLPA---GVTRAELREAF------KGHVLGPATLAGNFFR 147
Score = 107 bits (269), Expect = 2e-28
Identities = 52/153 (33%), Positives = 65/153 (42%), Gaps = 31/153 (20%)
Query: 184 VEYPGGVSVNLGNVLTPTQ-VKDQPTVTWNADPNQSYVLCMTVNHPIPDPDAPSRKEHTY 242
VEY G V GN L+P D PT+ +D +SY L M DPDAPSR +
Sbjct: 6 VEYTGAF-VCPGNNLSPPLSWSDAPTI---SDGTKSYALVMV------DPDAPSRSDPKG 55
Query: 243 REWHHWLVGNIKG-----------GKLDGADFLSAYVGAGPPPNTGLHRYVFLVYKQPNS 291
E+ HWLV NI G D L+ Y+G PPP TG HRYVFL+Y
Sbjct: 56 SEFLHWLVTNIPASVTELPGGGVQGVNDFGQTLAGYIGPCPPPGTGPHRYVFLLYALDEK 115
Query: 292 ITFDEARLPNNSQDGRAKFSIANFAEKYKLGEP 324
+ + R F + + LG
Sbjct: 116 LDLPA---GVTRAELREAF------KGHVLGPA 139
>gnl|CDD|176642 cd00457, PEBP, PhosphatidylEthanolamine-Binding Protein (PEBP)
domain. PhosphatidylEthanolamine-Binding Proteins
(PEBPs) are represented in all three major phylogenetic
divisions (eukaryotes, bacteria, archaea). A number of
biological roles for members of the PEBP family include
serine protease inhibition, membrane biogenesis,
regulation of flowering plant stem architecture, and
Raf-1 kinase inhibition. Although their overall
structures are similar, the members of the PEBP family
bind very different substrates including phospholipids,
opioids, and hydrophobic odorant molecules as well as
having different oligomerization states
(monomer/dimer/tetramer).
Length = 159
Score = 89.0 bits (221), Expect = 2e-21
Identities = 45/169 (26%), Positives = 58/169 (34%), Gaps = 47/169 (27%)
Query: 39 NLGNVLTPTQVKDQ----PTVTW--NADPNQSYVLCMTVNHPIPDPDAPSRKEHTYREWH 92
G+VL P + P+++W + YVL M DPDAP R
Sbjct: 9 PSGSVLPPEYSFEGVGRFPSLSWDGPPPDVKEYVLVME------DPDAP-----LGRPIV 57
Query: 93 HWLVGNIKGGKLD------------------GADF-----LSAYVGAGPPPNTGLHRYVF 129
H LV I K G + + Y+G PP G HRY F
Sbjct: 58 HGLVYGIPANKTSLSNDDFVVTDNGKGGLQGGFKYGKNRGGTVYIGPRPPLGHGPHRYFF 117
Query: 130 LVYKQPNSITFDEARLPNNSQDGRAKFSIANFAEKYKLGEPIAVNFFQA 178
VY + + DGR KF +A FAE LG + Q
Sbjct: 118 QVYALDEPLDRSK------LGDGRTKFEVARFAEGNVLG-AVGEWVGQF 159
Score = 85.9 bits (213), Expect = 2e-20
Identities = 44/159 (27%), Positives = 56/159 (35%), Gaps = 46/159 (28%)
Query: 193 NLGNVLTPTQVKDQ----PTVTW--NADPNQSYVLCMTVNHPIPDPDAPSRKEHTYREWH 246
G+VL P + P+++W + YVL M DPDAP R
Sbjct: 9 PSGSVLPPEYSFEGVGRFPSLSWDGPPPDVKEYVLVME------DPDAP-----LGRPIV 57
Query: 247 HWLVGNIKGGKLD------------------GADF-----LSAYVGAGPPPNTGLHRYVF 283
H LV I K G + + Y+G PP G HRY F
Sbjct: 58 HGLVYGIPANKTSLSNDDFVVTDNGKGGLQGGFKYGKNRGGTVYIGPRPPLGHGPHRYFF 117
Query: 284 LVYKQPNSITFDEARLPNNSQDGRAKFSIANFAEKYKLG 322
VY + + DGR KF +A FAE LG
Sbjct: 118 QVYALDEPLDRSK------LGDGRTKFEVARFAEGNVLG 150
>gnl|CDD|177765 PLN00169, PLN00169, CETS family protein; Provisional.
Length = 175
Score = 72.5 bits (178), Expect = 3e-15
Identities = 54/156 (34%), Positives = 74/156 (47%), Gaps = 18/156 (11%)
Query: 23 LRTAQGKVEYPGGVSVNLGNVLTPTQVKDQPTVTWNADPNQS-YVLCMTVNHPIPDPDAP 81
R+ +V Y G VN G L P+QV +QP V + ++ Y L M DPDAP
Sbjct: 23 TRSISLRVTY-GSREVNNGCELKPSQVVNQPRVDIGGEDLRTFYTLVMV------DPDAP 75
Query: 82 SRKEHTYREWHHWLVGNIKGGKLDGADFLSAYVG-AGPPPNTGLHRYVFLVYKQPNSITF 140
S RE+ HWLV +I GA F V P P G+HR+VF++++Q T
Sbjct: 76 SPSNPNLREYLHWLVTDIPA--TTGATFGQEVVCYESPRPTAGIHRFVFVLFRQLGRQTV 133
Query: 141 DEARLPNNSQDGRAKFSIANFAEKYKLGEPIAVNFF 176
+ R F+ +FAE Y LG P+A +F
Sbjct: 134 -------YAPGWRQNFNTRDFAELYNLGSPVAAVYF 162
Score = 65.6 bits (160), Expect = 8e-13
Identities = 48/135 (35%), Positives = 64/135 (47%), Gaps = 17/135 (12%)
Query: 192 VNLGNVLTPTQVKDQPTVTWNADPNQS-YVLCMTVNHPIPDPDAPSRKEHTYREWHHWLV 250
VN G L P+QV +QP V + ++ Y L M DPDAPS RE+ HWLV
Sbjct: 37 VNNGCELKPSQVVNQPRVDIGGEDLRTFYTLVMV------DPDAPSPSNPNLREYLHWLV 90
Query: 251 GNIKGGKLDGADFLSAYVG-AGPPPNTGLHRYVFLVYKQPNSITFDEARLPNNSQDGRAK 309
+I GA F V P P G+HR+VF++++Q T + R
Sbjct: 91 TDIPA--TTGATFGQEVVCYESPRPTAGIHRFVFVLFRQLGRQTV-------YAPGWRQN 141
Query: 310 FSIANFAEKYKLGEP 324
F+ +FAE Y LG P
Sbjct: 142 FNTRDFAELYNLGSP 156
>gnl|CDD|224793 COG1881, COG1881, Phospholipid-binding protein [General function
prediction only].
Length = 174
Score = 52.4 bits (126), Expect = 3e-08
Identities = 28/102 (27%), Positives = 37/102 (36%), Gaps = 31/102 (30%)
Query: 53 PTVTWNADP--NQSYVLCMTVNHPIPDPDAPSRKEHTYREWHHWLVGNIK---------G 101
P ++W+ P +S+ L + DPDAP+ W HW+V NI
Sbjct: 49 PPLSWSGVPEGTKSFALTVD------DPDAPTGGG-----WVHWVVANIPADVTELPEGS 97
Query: 102 GKLDGADFLS--------AYVGAGPPPNTGLHRYVFLVYKQP 135
G + Y G PP G HRY F VY
Sbjct: 98 GPKSKIGIVQGINDFGSRGYGGPCPPKGHG-HRYYFTVYALD 138
Score = 52.4 bits (126), Expect = 3e-08
Identities = 28/102 (27%), Positives = 37/102 (36%), Gaps = 31/102 (30%)
Query: 207 PTVTWNADP--NQSYVLCMTVNHPIPDPDAPSRKEHTYREWHHWLVGNIK---------G 255
P ++W+ P +S+ L + DPDAP+ W HW+V NI
Sbjct: 49 PPLSWSGVPEGTKSFALTVD------DPDAPTGGG-----WVHWVVANIPADVTELPEGS 97
Query: 256 GKLDGADFLS--------AYVGAGPPPNTGLHRYVFLVYKQP 289
G + Y G PP G HRY F VY
Sbjct: 98 GPKSKIGIVQGINDFGSRGYGGPCPPKGHG-HRYYFTVYALD 138
>gnl|CDD|176643 cd00865, PEBP_bact_arch, PhosphatidylEthanolamine-Binding Protein
(PEBP) domain present in bacteria and archaea.
PhosphatidylEthanolamine-Binding Proteins (PEBPs) are
represented in all three major phylogenetic divisions
(eukaryotes, bacteria, archaea). The members in this
subgroup are present in bacterial and archaea. Members
here include Escherichia coli YBHB and YBCL which are
thought to regulate protein phosphorylation as well as
Sulfolobus solfataricus SsCEI which inhibits serine
proteases alpha-chymotrypsin and elastase. Although
their overall structures are similar, the members of the
PEBP family have very different substrates and
oligomerization states (monomer/dimer/tetramer). In a
few of the bacterial members present here the
dimerization interface is proposed to form the ligand
binding site, unlike in other PEBP members.
Length = 150
Score = 46.8 bits (112), Expect = 2e-06
Identities = 34/100 (34%), Positives = 42/100 (42%), Gaps = 32/100 (32%)
Query: 53 PTVTWNADPN--QSYVLCMTVNHPIPDPDAPSRKEHTYREWHHWLVGNI----------- 99
P ++W+ P +S L + DPDAP T + HW+V NI
Sbjct: 28 PPLSWSGVPAGTKSLALIVE------DPDAP-----TGGGFVHWVVWNIPADTTELPEGA 76
Query: 100 -KGGKLDGA-----DFLSA-YVGAGPPPNTGLHRYVFLVY 132
+G GA DF A Y G PP G HRYVF VY
Sbjct: 77 SRGALPAGAVQGRNDFGEAGYGGPCPPD-GGPHRYVFTVY 115
Score = 46.8 bits (112), Expect = 2e-06
Identities = 34/100 (34%), Positives = 42/100 (42%), Gaps = 32/100 (32%)
Query: 207 PTVTWNADPN--QSYVLCMTVNHPIPDPDAPSRKEHTYREWHHWLVGNI----------- 253
P ++W+ P +S L + DPDAP T + HW+V NI
Sbjct: 28 PPLSWSGVPAGTKSLALIVE------DPDAP-----TGGGFVHWVVWNIPADTTELPEGA 76
Query: 254 -KGGKLDGA-----DFLSA-YVGAGPPPNTGLHRYVFLVY 286
+G GA DF A Y G PP G HRYVF VY
Sbjct: 77 SRGALPAGAVQGRNDFGEAGYGGPCPPD-GGPHRYVFTVY 115
>gnl|CDD|182339 PRK10257, PRK10257, putative kinase inhibitor protein; Provisional.
Length = 158
Score = 38.6 bits (90), Expect = 0.001
Identities = 26/76 (34%), Positives = 30/76 (39%), Gaps = 26/76 (34%)
Query: 77 DPDAPSRKEHTYREWHHWLVGNI--------------KGGKLDGA-----DFLSA-YVGA 116
DPDAP T W HW+V N+ DG DF A Y GA
Sbjct: 52 DPDAP-----TGSGWWHWVVVNLPADTRVLPQGFGSGLVALPDGVLQTRTDFGKAGYGGA 106
Query: 117 GPPPNTGLHRYVFLVY 132
PP HRY+F V+
Sbjct: 107 APPKGET-HRYIFTVH 121
Score = 38.6 bits (90), Expect = 0.001
Identities = 26/76 (34%), Positives = 30/76 (39%), Gaps = 26/76 (34%)
Query: 231 DPDAPSRKEHTYREWHHWLVGNI--------------KGGKLDGA-----DFLSA-YVGA 270
DPDAP T W HW+V N+ DG DF A Y GA
Sbjct: 52 DPDAP-----TGSGWWHWVVVNLPADTRVLPQGFGSGLVALPDGVLQTRTDFGKAGYGGA 106
Query: 271 GPPPNTGLHRYVFLVY 286
PP HRY+F V+
Sbjct: 107 APPKGET-HRYIFTVH 121
>gnl|CDD|182092 PRK09818, PRK09818, putative kinase inhibitor; Provisional.
Length = 183
Score = 36.8 bits (85), Expect = 0.007
Identities = 31/101 (30%), Positives = 40/101 (39%), Gaps = 30/101 (29%)
Query: 53 PTVTWNADPNQSYVLCMTVNHPIPDPDAPSRKEHTYREWHHWLVGNIKG---------GK 103
P++TW+ P + +TV DPDAP T W HW V NI G+
Sbjct: 53 PSLTWSGAPEGTKSFAVTVY----DPDAP-----TGSGWWHWTVANIPATVTYLPADAGR 103
Query: 104 LDGA-----------DF-LSAYVGAGPPPNTGLHRYVFLVY 132
DG DF + + GA PP H Y F V+
Sbjct: 104 RDGTKLPTGAVQGRNDFGYAGFGGACPPKGDKPHHYQFKVW 144
Score = 36.8 bits (85), Expect = 0.007
Identities = 31/101 (30%), Positives = 40/101 (39%), Gaps = 30/101 (29%)
Query: 207 PTVTWNADPNQSYVLCMTVNHPIPDPDAPSRKEHTYREWHHWLVGNIKG---------GK 257
P++TW+ P + +TV DPDAP T W HW V NI G+
Sbjct: 53 PSLTWSGAPEGTKSFAVTVY----DPDAP-----TGSGWWHWTVANIPATVTYLPADAGR 103
Query: 258 LDGA-----------DF-LSAYVGAGPPPNTGLHRYVFLVY 286
DG DF + + GA PP H Y F V+
Sbjct: 104 RDGTKLPTGAVQGRNDFGYAGFGGACPPKGDKPHHYQFKVW 144
>gnl|CDD|129572 TIGR00481, TIGR00481, Raf kinase inhibitor-like protein, YbhB/YbcL
family. [Unknown function, General].
Length = 141
Score = 34.0 bits (78), Expect = 0.035
Identities = 31/101 (30%), Positives = 40/101 (39%), Gaps = 32/101 (31%)
Query: 53 PTVTWNADPNQSYVLCMTVNHPIPDPDAPSRKEHTYREWHHWLVGNI------------- 99
P ++W+ P + L +T DPDAP T W HW+V NI
Sbjct: 16 PPLSWDGVPEGAKSLALTCI----DPDAP-----TGCGWWHWVVVNIPADTTVLPENASS 66
Query: 100 KGGKLDGADFL--------SAYVGAGPPPNTGLHRYVFLVY 132
+L L S Y+G PP G HRY+F VY
Sbjct: 67 DDKRLPQGVPLQGRNDFGKSGYIGPCPP--KGDHRYLFTVY 105
Score = 34.0 bits (78), Expect = 0.035
Identities = 31/101 (30%), Positives = 40/101 (39%), Gaps = 32/101 (31%)
Query: 207 PTVTWNADPNQSYVLCMTVNHPIPDPDAPSRKEHTYREWHHWLVGNI------------- 253
P ++W+ P + L +T DPDAP T W HW+V NI
Sbjct: 16 PPLSWDGVPEGAKSLALTCI----DPDAP-----TGCGWWHWVVVNIPADTTVLPENASS 66
Query: 254 KGGKLDGADFL--------SAYVGAGPPPNTGLHRYVFLVY 286
+L L S Y+G PP G HRY+F VY
Sbjct: 67 DDKRLPQGVPLQGRNDFGKSGYIGPCPP--KGDHRYLFTVY 105
>gnl|CDD|232854 TIGR00170, leuC, 3-isopropylmalate dehydratase, large subunit.
Members of this family are 3-isopropylmalate
dehydratase, large subunit, or the large subunit domain
of single-chain forms. Homoaconitase, aconitase, and
3-isopropylmalate dehydratase have similar overall
structures. All are dehydratases (EC 4.2.1.-) and bind a
Fe-4S iron-sulfur cluster. 3-isopropylmalate dehydratase
is split into large (leuC) and small (leuD) chains in
eubacteria. Several pairs of archaeal proteins resemble
the leuC and leuD pair in length and sequence but even
more closely resemble the respective domains of
homoaconitase, and their identity is uncertain. These
homologs are now described by a separate model of
subfamily (rather than equivalog) homology type, and the
priors and cutoffs for this model have been changed to
focus this equivalog family more narrowly [Amino acid
biosynthesis, Pyruvate family].
Length = 465
Score = 31.7 bits (72), Expect = 0.57
Identities = 21/77 (27%), Positives = 30/77 (38%), Gaps = 11/77 (14%)
Query: 178 AEYDDYVEYPGGVSVNLG----NVLTPTQVKDQPTVTWNADPNQSYVLCMTVNHPIPDPD 233
E+D V Y + + G V+T P VTW +P Q + VN +PDP+
Sbjct: 253 KEFDKAVAYWKTLKTDEGAVFDTVITLEANDISPQVTWGTNPGQV----LPVNSEVPDPE 308
Query: 234 ---APSRKEHTYREWHH 247
P K R +
Sbjct: 309 SFADPVDKASAERALAY 325
Score = 28.3 bits (63), Expect = 7.3
Identities = 16/54 (29%), Positives = 22/54 (40%), Gaps = 7/54 (12%)
Query: 43 VLTPTQVKDQPTVTWNADPNQSYVLCMTVNHPIPDPD---APSRKEHTYREWHH 93
V+T P VTW +P Q + VN +PDP+ P K R +
Sbjct: 276 VITLEANDISPQVTWGTNPGQV----LPVNSEVPDPESFADPVDKASAERALAY 325
>gnl|CDD|184826 PRK14799, thrS, threonyl-tRNA synthetase; Provisional.
Length = 545
Score = 29.4 bits (66), Expect = 3.0
Identities = 23/115 (20%), Positives = 42/115 (36%), Gaps = 34/115 (29%)
Query: 119 PPNTGL-HRYVFLVYKQPNSITFDEARLPNNSQDGRAKFSIANFAEKYKLGEPIAVNFFQ 177
P GL R ++ K SIT DE + K N +
Sbjct: 26 PVAVGLGERDFYIDVKSDTSITLDEVK----------KAINENVLANVSIE--------- 66
Query: 178 AEYDDYVEYPGG-VSVNLGNVLTPTQVKDQPTVTWNADPNQSYVLCMTVNHPIPD 231
++ + Y G VS+ +D+ +++ N +P +L ++ +HP P+
Sbjct: 67 ---NNQIVYKGNKVSII----------EDKVSISTNLNPKYFEILNISTHHPNPN 108
>gnl|CDD|183543 PRK12466, PRK12466, isopropylmalate isomerase large subunit;
Provisional.
Length = 471
Score = 29.5 bits (67), Expect = 3.2
Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 7/40 (17%)
Query: 53 PTVTWNADPNQSYVLCMTVNHPIPDPDA---PSRKEHTYR 89
P VTW P+Q+ + + +PDP A P+R+ R
Sbjct: 288 PQVTWGTSPDQA----VPITGRVPDPAAEADPARRAAMER 323
Score = 29.5 bits (67), Expect = 3.2
Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 7/40 (17%)
Query: 207 PTVTWNADPNQSYVLCMTVNHPIPDPDA---PSRKEHTYR 243
P VTW P+Q+ + + +PDP A P+R+ R
Sbjct: 288 PQVTWGTSPDQA----VPITGRVPDPAAEADPARRAAMER 323
>gnl|CDD|225698 COG3156, PulK, Type II secretory pathway, component PulK
[Intracellular trafficking and secretion].
Length = 323
Score = 28.9 bits (65), Expect = 3.5
Identities = 10/41 (24%), Positives = 17/41 (41%)
Query: 293 TFDEARLPNNSQDGRAKFSIANFAEKYKLGEPKKICKVRVR 333
D + D + F++ K +LGE +K V+V
Sbjct: 86 LLDGGTVRFKLIDEQGCFNLNALLTKQRLGEYRKTDSVQVF 126
>gnl|CDD|226453 COG3944, COG3944, Capsular polysaccharide biosynthesis protein
[Cell envelope biogenesis, outer membrane].
Length = 226
Score = 28.1 bits (63), Expect = 5.9
Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
Query: 36 VSVNLGNVLTPTQVKDQPTVTWNADPNQSYVLCMTVNHPIPD 77
V LG LT +Q+ + +VT + ++ +TVN P+
Sbjct: 90 VVSELGLELTASQLSSKISVT---SETDTQIINITVNDGSPE 128
Score = 28.1 bits (63), Expect = 5.9
Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
Query: 190 VSVNLGNVLTPTQVKDQPTVTWNADPNQSYVLCMTVNHPIPD 231
V LG LT +Q+ + +VT + ++ +TVN P+
Sbjct: 90 VVSELGLELTASQLSSKISVT---SETDTQIINITVNDGSPE 128
>gnl|CDD|149916 pfam09002, DUF1887, Domain of unknown function (DUF1887). This
domain is found in a set of hypothetical bacterial
proteins.
Length = 379
Score = 28.2 bits (63), Expect = 7.5
Identities = 10/41 (24%), Positives = 19/41 (46%)
Query: 134 QPNSITFDEARLPNNSQDGRAKFSIANFAEKYKLGEPIAVN 174
+ I D +P+ + ++ AE+YK GE + +N
Sbjct: 50 KIRGIDVDFFEIPDGVDIEAIEEALLGLAEEYKAGEEVKLN 90
>gnl|CDD|227391 COG5058, LAG1, Protein transporter of the TRAM (translocating
chain-associating membrane) superfamily, longevity
assurance factor [Intracellular trafficking and
secretion].
Length = 395
Score = 27.9 bits (62), Expect = 8.2
Identities = 11/36 (30%), Positives = 19/36 (52%)
Query: 110 LSAYVGAGPPPNTGLHRYVFLVYKQPNSITFDEARL 145
SAY + LHR++FL Y+ P++ + + L
Sbjct: 80 YSAYFLSSNSTRNYLHRFIFLSYQIPDTNQYGKGIL 115
Score = 27.9 bits (62), Expect = 8.2
Identities = 11/36 (30%), Positives = 19/36 (52%)
Query: 264 LSAYVGAGPPPNTGLHRYVFLVYKQPNSITFDEARL 299
SAY + LHR++FL Y+ P++ + + L
Sbjct: 80 YSAYFLSSNSTRNYLHRFIFLSYQIPDTNQYGKGIL 115
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.316 0.136 0.429
Gapped
Lambda K H
0.267 0.0756 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 18,034,001
Number of extensions: 1724266
Number of successful extensions: 1238
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1210
Number of HSP's successfully gapped: 35
Length of query: 343
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 245
Effective length of database: 6,590,910
Effective search space: 1614772950
Effective search space used: 1614772950
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (26.5 bits)