RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14207
(343 letters)
>2jyz_A CG7054-PA, GH14779P, PEBP; PEBP/RKIP, molecular modeling, chemical
shift variations, titration, unknown function; NMR
{Drosophila melanogaster}
Length = 179
Score = 164 bits (417), Expect = 3e-50
Identities = 76/160 (47%), Positives = 99/160 (61%), Gaps = 11/160 (6%)
Query: 29 KVEYPGGVSVNLGNVLTPTQVKDQPTVTWNA--DPNQSYVLCMTVNHPIPDPDAPSRKEH 86
KV Y + V GN LTPTQVKDQP V+W+ + L M DPDAP+R++
Sbjct: 18 KVIYGDDLEVKQGNELTPTQVKDQPIVSWSGLEGKSNLLTLLMV------DPDAPTRQDP 71
Query: 87 TYREWHHWLVGNIKGG--KLDGADFLSAYVGAGPPPNTGLHRYVFLVYKQPNSITFDEAR 144
YRE HW V NI G G L+ YVG+GPP +TGLHRY+FL+Y+Q N I +
Sbjct: 72 KYREILHWSVVNIPGSNENPSGGHSLADYVGSGPPKDTGLHRYIFLLYRQENKIE-ETPT 130
Query: 145 LPNNSQDGRAKFSIANFAEKYKLGEPIAVNFFQAEYDDYV 184
+ N ++ GR F+ +FA K+ LGEPIA N++QA+YDDYV
Sbjct: 131 ISNTTRTGRLNFNARDFAAKHGLGEPIAANYYQAQYDDYV 170
Score = 138 bits (349), Expect = 4e-40
Identities = 65/145 (44%), Positives = 85/145 (58%), Gaps = 11/145 (7%)
Query: 184 VEYPGGVSVNLGNVLTPTQVKDQPTVTWNA--DPNQSYVLCMTVNHPIPDPDAPSRKEHT 241
V Y + V GN LTPTQVKDQP V+W+ + L M DPDAP+R++
Sbjct: 19 VIYGDDLEVKQGNELTPTQVKDQPIVSWSGLEGKSNLLTLLMV------DPDAPTRQDPK 72
Query: 242 YREWHHWLVGNIKGG--KLDGADFLSAYVGAGPPPNTGLHRYVFLVYKQPNSITFDEARL 299
YRE HW V NI G G L+ YVG+GPP +TGLHRY+FL+Y+Q N I + +
Sbjct: 73 YREILHWSVVNIPGSNENPSGGHSLADYVGSGPPKDTGLHRYIFLLYRQENKIE-ETPTI 131
Query: 300 PNNSQDGRAKFSIANFAEKYKLGEP 324
N ++ GR F+ +FA K+ LGEP
Sbjct: 132 SNTTRTGRLNFNARDFAAKHGLGEP 156
>2iqy_A Phosphatidylethanolamine-binding protein 1; alpha-beta, hydrolase
inhibitor; 1.40A {Rattus norvegicus} PDB: 2iqx_A 1b7a_A*
1a44_A 1beh_A 1bd9_A 2l7w_A 2qyq_A* 1kn3_A
Length = 190
Score = 164 bits (416), Expect = 6e-50
Identities = 79/158 (50%), Positives = 104/158 (65%), Gaps = 8/158 (5%)
Query: 29 KVEYPGGVSVNLGNVLTPTQVKDQPT-VTWNA-DPNQSYVLCMTVNHPIPDPDAPSRKEH 86
+V+Y G LG VLTPTQV ++P+ ++W+ DP + Y L +T DPDAPSRK+
Sbjct: 29 RVDYGGVTVDELGKVLTPTQVMNRPSSISWDGLDPGKLYTLVLT------DPDAPSRKDP 82
Query: 87 TYREWHHWLVGNIKGGKLDGADFLSAYVGAGPPPNTGLHRYVFLVYKQPNSITFDEARLP 146
+REWHH+LV N+KG + LS YVG+GPP +TGLHRYV+LVY+Q + DE L
Sbjct: 83 KFREWHHFLVVNMKGNDISSGTVLSEYVGSGPPKDTGLHRYVWLVYEQEQPLNCDEPILS 142
Query: 147 NNSQDGRAKFSIANFAEKYKLGEPIAVNFFQAEYDDYV 184
N S D R KF + +F +KY LG P+A FQAE+DD V
Sbjct: 143 NKSGDNRGKFKVESFRKKYHLGAPVAGTCFQAEWDDSV 180
Score = 137 bits (346), Expect = 1e-39
Identities = 71/143 (49%), Positives = 93/143 (65%), Gaps = 8/143 (5%)
Query: 184 VEYPGGVSVNLGNVLTPTQVKDQPT-VTWNA-DPNQSYVLCMTVNHPIPDPDAPSRKEHT 241
V+Y G LG VLTPTQV ++P+ ++W+ DP + Y L +T DPDAPSRK+
Sbjct: 30 VDYGGVTVDELGKVLTPTQVMNRPSSISWDGLDPGKLYTLVLT------DPDAPSRKDPK 83
Query: 242 YREWHHWLVGNIKGGKLDGADFLSAYVGAGPPPNTGLHRYVFLVYKQPNSITFDEARLPN 301
+REWHH+LV N+KG + LS YVG+GPP +TGLHRYV+LVY+Q + DE L N
Sbjct: 84 FREWHHFLVVNMKGNDISSGTVLSEYVGSGPPKDTGLHRYVWLVYEQEQPLNCDEPILSN 143
Query: 302 NSQDGRAKFSIANFAEKYKLGEP 324
S D R KF + +F +KY LG P
Sbjct: 144 KSGDNRGKFKVESFRKKYHLGAP 166
>2gzq_A Phosphatidylethanolamine-binding protein; structural genomics, PSI,
protein structure initiative; HET: MSE; 1.30A
{Plasmodium vivax} PDB: 2r77_A
Length = 200
Score = 157 bits (397), Expect = 5e-47
Identities = 40/166 (24%), Positives = 58/166 (34%), Gaps = 20/166 (12%)
Query: 29 KVEYPGGVSVNLGNVLTPTQVKDQPT---VTWNADPNQSYVLCMTVNHPIPDPDAPSRKE 85
+ + G VN GN+L P + + Y+L M DPD PSR+
Sbjct: 40 YISFKSGKEVNHGNILDLAGTGSVPRNIKFSEEPPEDYCYILFMI------DPDFPSRRR 93
Query: 86 HTYREWHHWLVGNIKG-----GKLDGADFLSAYVGAGPPPNTGLHRYVFLVYKQPNSITF 140
R++ HW V IK G L YVG TGLHR F++
Sbjct: 94 PDGRDYVHWAVSGIKSKELVKGTDKNCITLLPYVGPSIKKGTGLHRISFILSLVKEENKG 153
Query: 141 DEARLPNNSQD---GRAKFSIANFAEKYKLG---EPIAVNFFQAEY 180
+ +P + R KF+ A + + N+ Q
Sbjct: 154 NVTGVPLYRGEHYITRVKFNNCQSAYNVIQMNDMKIVGFNWCQMRR 199
Score = 143 bits (363), Expect = 6e-42
Identities = 41/182 (22%), Positives = 59/182 (32%), Gaps = 17/182 (9%)
Query: 154 AKFSIANFAEKYKLGEPIAVNFFQAEYDDYVEYPGGVSVNLGNVLTPTQVKDQPT---VT 210
+I + + D Y+ + G VN GN+L P +
Sbjct: 11 GPPTIEELKREKIIPHVFPDENVDLTVDMYISFKSGKEVNHGNILDLAGTGSVPRNIKFS 70
Query: 211 WNADPNQSYVLCMTVNHPIPDPDAPSRKEHTYREWHHWLVGNIKG-----GKLDGADFLS 265
+ Y+L M DPD PSR+ R++ HW V IK G L
Sbjct: 71 EEPPEDYCYILFMI------DPDFPSRRRPDGRDYVHWAVSGIKSKELVKGTDKNCITLL 124
Query: 266 AYVGAGPPPNTGLHRYVFLVYKQPNSITFDEARLPNNSQD---GRAKFSIANFAEKYKLG 322
YVG TGLHR F++ + +P + R KF+ A
Sbjct: 125 PYVGPSIKKGTGLHRISFILSLVKEENKGNVTGVPLYRGEHYITRVKFNNCQSAYNVIQM 184
Query: 323 EP 324
Sbjct: 185 ND 186
>1wpx_B Carboxypeptidase Y inhibitor; carboxypeptidase inhibitor, serine
proteinase inhibitor, Pro inhibitor complex; HET: NAG
NDG; 2.70A {Saccharomyces cerevisiae} SCOP: b.17.1.1
Length = 220
Score = 148 bits (375), Expect = 1e-43
Identities = 48/188 (25%), Positives = 74/188 (39%), Gaps = 44/188 (23%)
Query: 29 KVEYPGGVSVNLGNVLTPTQVKDQPTVTWN----------------ADPNQSYVLCMTVN 72
VEY V +GN L + + +P + + + L MT
Sbjct: 38 AVEYSSSAPVAMGNTLPTEKARSKPQFQFTFNKQMQKSVPQANAYVPQDDDLFTLVMT-- 95
Query: 73 HPIPDPDAPSRKEHTYREWHHWLVGNIKG------------------GKLDGADFLSAYV 114
DPDAPS+ +H + E+ H + ++K G++ L Y+
Sbjct: 96 ----DPDAPSKTDHKWSEFCHLVECDLKLLNEATHETSGATEFFASEFNTKGSNTLIEYM 151
Query: 115 GAGPPPNTGLHRYVFLVYKQPNSITFDEARLP---NNSQDGRAKFSIANFAEKYKLGEPI 171
G PP +G HRYVFL+YKQP + + N G + +A++ L +
Sbjct: 152 GPAPPKGSGPHRYVFLLYKQPKGVDSSKFSKIKDRPNWGYGTPATGVGKWAKENNLQ-LV 210
Query: 172 AVNFFQAE 179
A NFF AE
Sbjct: 211 ASNFFYAE 218
Score = 133 bits (335), Expect = 1e-37
Identities = 45/192 (23%), Positives = 71/192 (36%), Gaps = 43/192 (22%)
Query: 168 GEPIAVNFFQAEYDDYVEYPGGVSVNLGNVLTPTQVKDQPTVTWN--------------- 212
+ I FQ VEY V +GN L + + +P +
Sbjct: 23 EDVIHDTSFQPSGILAVEYSSSAPVAMGNTLPTEKARSKPQFQFTFNKQMQKSVPQANAY 82
Query: 213 -ADPNQSYVLCMTVNHPIPDPDAPSRKEHTYREWHHWLVGNIKG---------------- 255
+ + L MT DPDAPS+ +H + E+ H + ++K
Sbjct: 83 VPQDDDLFTLVMT------DPDAPSKTDHKWSEFCHLVECDLKLLNEATHETSGATEFFA 136
Query: 256 --GKLDGADFLSAYVGAGPPPNTGLHRYVFLVYKQPNSITFDEARLP---NNSQDGRAKF 310
G++ L Y+G PP +G HRYVFL+YKQP + + N G
Sbjct: 137 SEFNTKGSNTLIEYMGPAPPKGSGPHRYVFLLYKQPKGVDSSKFSKIKDRPNWGYGTPAT 196
Query: 311 SIANFAEKYKLG 322
+ +A++ L
Sbjct: 197 GVGKWAKENNLQ 208
>1wko_A Terminal flower 1 protein; CIS-peptide, PEBP, signaling protein;
1.80A {Arabidopsis thaliana} PDB: 1qou_A
Length = 180
Score = 145 bits (366), Expect = 1e-42
Identities = 45/158 (28%), Positives = 69/158 (43%), Gaps = 17/158 (10%)
Query: 29 KVEYPGGVSVNLGNVLTPTQVKDQPTVTW-NADPNQSYVLCMTVNHPIPDPDAPSRKEHT 87
V Y V+ G+ L P+ V +P V D + L M DPD P +
Sbjct: 35 NVSY-NKKQVSNGHELFPSSVSSKPRVEIHGGDLRSFFTLVMI------DPDVPGPSDPF 87
Query: 88 YREWHHWLVGNIKGGK-LDGADFLSAYVGAGPPPNTGLHRYVFLVYKQPNSITFDEARLP 146
+E HW+V NI G + +Y P P+ G+HR+VF++++Q R+
Sbjct: 88 LKEHLHWIVTNIPGTTDATFGKEVVSYEL--PRPSIGIHRFVFVLFRQKQR------RVI 139
Query: 147 NNSQDGRAKFSIANFAEKYKLGEPIAVNFFQAEYDDYV 184
+ R F+ FA +Y LG P+A FF A+ +
Sbjct: 140 FPNIPSRDHFNTRKFAVEYDLGLPVAAVFFNAQRETAA 177
Score = 118 bits (298), Expect = 1e-32
Identities = 41/144 (28%), Positives = 62/144 (43%), Gaps = 17/144 (11%)
Query: 183 YVEYPGGVSVNLGNVLTPTQVKDQPTVTW-NADPNQSYVLCMTVNHPIPDPDAPSRKEHT 241
V Y V+ G+ L P+ V +P V D + L M DPD P +
Sbjct: 35 NVSY-NKKQVSNGHELFPSSVSSKPRVEIHGGDLRSFFTLVMI------DPDVPGPSDPF 87
Query: 242 YREWHHWLVGNIKGGK-LDGADFLSAYVGAGPPPNTGLHRYVFLVYKQPNSITFDEARLP 300
+E HW+V NI G + +Y P P+ G+HR+VF++++Q R+
Sbjct: 88 LKEHLHWIVTNIPGTTDATFGKEVVSYE--LPRPSIGIHRFVFVLFRQKQR------RVI 139
Query: 301 NNSQDGRAKFSIANFAEKYKLGEP 324
+ R F+ FA +Y LG P
Sbjct: 140 FPNIPSRDHFNTRKFAVEYDLGLP 163
>3axy_A Protein heading DATE 3A; phosphatidylethanolamine-binding protein,
14-3-3 protein, BZ protein, floral induction; HET: SEP;
2.40A {Oryza sativa japonica group} PDB: 1wkp_A
Length = 170
Score = 129 bits (326), Expect = 9e-37
Identities = 49/155 (31%), Positives = 69/155 (44%), Gaps = 18/155 (11%)
Query: 29 KVEYPGGVSVNLGNVLTPTQVKDQPTVTWNA-DPNQSYVLCMTVNHPIPDPDAPSRKEHT 87
KV Y +V+ G L P+ V QP V D Y L M DPDAPS +
Sbjct: 31 KVTYGSK-TVSNGLELKPSMVTHQPRVEVGGNDMRTFYTLVMV------DPDAPSPSDPN 83
Query: 88 YREWHHWLVGNIK-GGKLDGADFLSAYVGAGPPPNTGLHRYVFLVYKQPNSITFDEARLP 146
RE+ HWLV +I + +Y P P G+HR VF++++Q T
Sbjct: 84 LREYLHWLVTDIPGTTAASFGQEVMSYES--PRPTMGIHRLVFVLFQQLGRQTVYAP--- 138
Query: 147 NNSQDGRAKFSIANFAEKYKLGEPIAVNFFQAEYD 181
R F+ +FAE Y LG P+A +F ++ +
Sbjct: 139 ----GWRQNFNTKDFAELYNLGSPVAAVYFNSQRE 169
Score = 111 bits (279), Expect = 7e-30
Identities = 46/144 (31%), Positives = 61/144 (42%), Gaps = 18/144 (12%)
Query: 183 YVEYPGGVSVNLGNVLTPTQVKDQPTVTWNA-DPNQSYVLCMTVNHPIPDPDAPSRKEHT 241
V Y +V+ G L P+ V QP V D Y L M DPDAPS +
Sbjct: 31 KVTYGSK-TVSNGLELKPSMVTHQPRVEVGGNDMRTFYTLVMV------DPDAPSPSDPN 83
Query: 242 YREWHHWLVGNIK-GGKLDGADFLSAYVGAGPPPNTGLHRYVFLVYKQPNSITFDEARLP 300
RE+ HWLV +I + +Y P P G+HR VF++++Q T
Sbjct: 84 LREYLHWLVTDIPGTTAASFGQEVMSYE--SPRPTMGIHRLVFVLFQQLGRQTVYAP--- 138
Query: 301 NNSQDGRAKFSIANFAEKYKLGEP 324
R F+ +FAE Y LG P
Sbjct: 139 ----GWRQNFNTKDFAELYNLGSP 158
>1fux_A Hypothetical 19.5 kDa protein in EMRE-RUS intergenic region; beta
protein, unknown function; 1.81A {Escherichia coli}
SCOP: b.17.1.2
Length = 166
Score = 51.7 bits (124), Expect = 3e-08
Identities = 27/103 (26%), Positives = 39/103 (37%), Gaps = 34/103 (33%)
Query: 53 PTVTWNADPN--QSYVLCMTVNHPIPDPDAPSRKEHTYREWHHWLVGNIKG--------- 101
P++TW+ P +S+ + + DPDAP+ W HW V NI
Sbjct: 34 PSLTWSGVPEGTKSFAVTVY------DPDAPTGSG-----WWHWTVVNIPATVTYLPVDA 82
Query: 102 GKLDGADFLS------------AYVGAGPPPNTGLHRYVFLVY 132
G+ DG + + GA PP H Y F V+
Sbjct: 83 GRRDGTKLPTGAVQGRNDFGYAGFGGACPPKGDKPHHYQFKVW 125
Score = 51.7 bits (124), Expect = 3e-08
Identities = 27/103 (26%), Positives = 39/103 (37%), Gaps = 34/103 (33%)
Query: 207 PTVTWNADPN--QSYVLCMTVNHPIPDPDAPSRKEHTYREWHHWLVGNIKG--------- 255
P++TW+ P +S+ + + DPDAP+ W HW V NI
Sbjct: 34 PSLTWSGVPEGTKSFAVTVY------DPDAPTGSG-----WWHWTVVNIPATVTYLPVDA 82
Query: 256 GKLDGADFLS------------AYVGAGPPPNTGLHRYVFLVY 286
G+ DG + + GA PP H Y F V+
Sbjct: 83 GRRDGTKLPTGAVQGRNDFGYAGFGGACPPKGDKPHHYQFKVW 125
>3n08_A Putative phosphatidylethanolamine-binding protein; eukarytic
homolog RAF kinase inhibitor protein (RKIP). csgid
structural genomics; 1.25A {Chlamydia trachomatis}
Length = 153
Score = 48.9 bits (117), Expect = 2e-07
Identities = 23/94 (24%), Positives = 31/94 (32%), Gaps = 22/94 (23%)
Query: 53 PTVTWNADPN--QSYVLCMTVNHPIPDPDAPSRKEHTYREWHHWLVGNIKG-------GK 103
P ++++ P +S VL + DPD P W HW+V N+ G
Sbjct: 30 PPLSFSDVPREAKSLVLIVE------DPDVPPSVRED-GLWIHWIVYNLSPVVSNLAEGA 82
Query: 104 LDGA-----DFLSAYVGAGPPPNTGLHRYVFLVY 132
A P P HRY F Y
Sbjct: 83 QIFAVQGLNTAGEIG-YCPPCPPDAKHRYYFYAY 115
Score = 48.9 bits (117), Expect = 2e-07
Identities = 23/94 (24%), Positives = 31/94 (32%), Gaps = 22/94 (23%)
Query: 207 PTVTWNADPN--QSYVLCMTVNHPIPDPDAPSRKEHTYREWHHWLVGNIKG-------GK 257
P ++++ P +S VL + DPD P W HW+V N+ G
Sbjct: 30 PPLSFSDVPREAKSLVLIVE------DPDVPPSVRED-GLWIHWIVYNLSPVVSNLAEGA 82
Query: 258 LDGA-----DFLSAYVGAGPPPNTGLHRYVFLVY 286
A P P HRY F Y
Sbjct: 83 QIFAVQGLNTAGEIG-YCPPCPPDAKHRYYFYAY 115
>1fjj_A Hypothetical 17.1 kDa protein in MODC-BIOA intergenic region; PEPB
family, lipid binding protein; HET: MSE EPE; 1.66A
{Escherichia coli} SCOP: b.17.1.2 PDB: 1vi3_A*
Length = 159
Score = 43.7 bits (103), Expect = 1e-05
Identities = 26/101 (25%), Positives = 36/101 (35%), Gaps = 32/101 (31%)
Query: 53 PTVTWNADPN--QSYVLCMTVNHPIPDPDAPSRKEHTYREWHHWLVGNIK---------- 100
P + W+ P +S+V+ DPDAP+ W HW+V N+
Sbjct: 33 PHLAWDDVPAGTKSFVVTCY------DPDAPTGSG-----WWHWVVVNLPADTRVLPQGF 81
Query: 101 --------GGKLDGA-DFLSAYVGAGPPPNTGLHRYVFLVY 132
G L DF PP HRY+F V+
Sbjct: 82 GSGLVAMPDGVLQTRTDFGKTGYDGAAPPKGETHRYIFTVH 122
Score = 43.7 bits (103), Expect = 1e-05
Identities = 26/101 (25%), Positives = 36/101 (35%), Gaps = 32/101 (31%)
Query: 207 PTVTWNADPN--QSYVLCMTVNHPIPDPDAPSRKEHTYREWHHWLVGNIK---------- 254
P + W+ P +S+V+ DPDAP+ W HW+V N+
Sbjct: 33 PHLAWDDVPAGTKSFVVTCY------DPDAPTGSG-----WWHWVVVNLPADTRVLPQGF 81
Query: 255 --------GGKLDGA-DFLSAYVGAGPPPNTGLHRYVFLVY 286
G L DF PP HRY+F V+
Sbjct: 82 GSGLVAMPDGVLQTRTDFGKTGYDGAAPPKGETHRYIFTVH 122
>2evv_A Hypothetical protein HP0218; alpha-beta structure, dimer,
structural genomics, PSI, prote structure initiative;
HET: MSE; 2.59A {Helicobacter pylori}
Length = 207
Score = 38.8 bits (90), Expect = 0.001
Identities = 26/114 (22%), Positives = 36/114 (31%), Gaps = 45/114 (39%)
Query: 53 PTVTWNADPN-QSYVLCMTVNHPIPDPDAPSRKEHTYREWHHWLVGNIK----------- 100
P ++W QSY L + D DA + HW+VGNI
Sbjct: 61 PKISWQKVEGAQSYALELI------DHDAQKVCGMP---FVHWVVGNIAHNVLEENASMM 111
Query: 101 ----------------GGKLDGADFL------SAYVGAGPPPNTGLHRYVFLVY 132
L+ ++ S Y+G PP G H Y+ VY
Sbjct: 112 DKRIVQGVNSLTQGFIRSPLNESEKQRSNLNNSVYIGPMPPN--GDHHYLIQVY 163
Score = 38.8 bits (90), Expect = 0.001
Identities = 26/114 (22%), Positives = 36/114 (31%), Gaps = 45/114 (39%)
Query: 207 PTVTWNADPN-QSYVLCMTVNHPIPDPDAPSRKEHTYREWHHWLVGNIK----------- 254
P ++W QSY L + D DA + HW+VGNI
Sbjct: 61 PKISWQKVEGAQSYALELI------DHDAQKVCGMP---FVHWVVGNIAHNVLEENASMM 111
Query: 255 ----------------GGKLDGADFL------SAYVGAGPPPNTGLHRYVFLVY 286
L+ ++ S Y+G PP G H Y+ VY
Sbjct: 112 DKRIVQGVNSLTQGFIRSPLNESEKQRSNLNNSVYIGPMPPN--GDHHYLIQVY 163
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.1 bits (88), Expect = 0.004
Identities = 54/318 (16%), Positives = 88/318 (27%), Gaps = 126/318 (39%)
Query: 16 RCHQNSALRTAQGKVEYPGGVSVNLGNVLTPTQVKD-------QPT----VTWNADPNQS 64
RC++ YP L P+ ++D P+ ++ + Q
Sbjct: 309 RCYE-----------AYPN-------TSLPPSILEDSLENNEGVPSPMLSIS---NLTQE 347
Query: 65 YVLCM--TVNHPIPDPDAPSRKEHTYREWHHWLVGNIKGGKLDGADFLSAYVGAGPPPNT 122
V N +P ++ LV N GA V +GPP
Sbjct: 348 QVQDYVNKTNSHLP----AGKQVEIS------LV-N-------GAK---NLVVSGPP--Q 384
Query: 123 GLHRYVFLVYKQPNSITFDEARLPNNSQDGRA-KFSIANFAEKYKLGEPIAVNF------ 175
L+ + K D++R+P S+ R KFS F L P+A F
Sbjct: 385 SLYGLNLTLRKAKAPSGLDQSRIP-FSE--RKLKFS-NRF-----L--PVASPFHSHLLV 433
Query: 176 ------FQAEYDDYVEYPG---GVSV----------NLGNVLTPT---QVKDQPTVTWNA 213
+ + V + + V L ++ + P V W
Sbjct: 434 PASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLP-VKWET 492
Query: 214 --DPNQSYVLCMTVNHPIPDPDAPSRKEHTYREWHHWLVGNIKGGKLDGADFLSA-YVGA 270
+++L P S L K G G + A +
Sbjct: 493 TTQFKATHILDF-------GPGGASGLGV--------LTHRNKDGT--GVRVIVAGTLDI 535
Query: 271 GPPPNTGLHRYVFLVYKQ 288
P + G +KQ
Sbjct: 536 NPDDDYG--------FKQ 545
>3t24_A Porin; beta-barrel, channel, bacterial outer membrane, membrane
Pro; HET: C8E; 2.40A {Pseudomonas aeruginosa}
Length = 401
Score = 27.1 bits (59), Expect = 8.8
Identities = 8/81 (9%), Positives = 23/81 (28%), Gaps = 6/81 (7%)
Query: 109 FLSAYVGAGPPPNTGLHRYVFLVYKQPNSITFDEARLPNNSQDGRAKFS------IANFA 162
F + + L Q +S ++ + + S
Sbjct: 137 FQGGALNSMEIDGLTLDAGRLKKVNQRDSSDNEDMTITGGGKRQIVVRSGLTSDKFDFAG 196
Query: 163 EKYKLGEPIAVNFFQAEYDDY 183
YK + ++ ++ + D++
Sbjct: 197 GSYKWTDNLSTSYHYGKLDNF 217
>1vq8_D 50S ribosomal protein L5P; ribosome 50S, protein-protein complex,
RNA-RNA complex, PROT complex, peptidyl transferase
reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A
{Haloarcula marismortui} SCOP: d.77.1.1 PDB: 1vq4_D*
1vq5_D* 1vq6_D* 1vq7_D* 1s72_D* 1vq9_D* 1vqk_D* 1vql_D*
1vqm_D* 1vqn_D* 1vqo_D* 1vqp_D* 1yhq_D* 1yi2_D* 1yij_D*
1yit_D* 1yj9_D* 1yjn_D* 1yjw_D* 2otj_D* ...
Length = 177
Score = 26.8 bits (60), Expect = 9.0
Identities = 6/21 (28%), Positives = 11/21 (52%), Gaps = 2/21 (9%)
Query: 153 RAKFSIANFAEKYKLGEPIAV 173
+AK ++ F + G+PI
Sbjct: 54 KAKRTVGEF--DIREGDPIGA 72
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.136 0.429
Gapped
Lambda K H
0.267 0.0470 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,646,631
Number of extensions: 342009
Number of successful extensions: 809
Number of sequences better than 10.0: 1
Number of HSP's gapped: 757
Number of HSP's successfully gapped: 36
Length of query: 343
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 249
Effective length of database: 4,077,219
Effective search space: 1015227531
Effective search space used: 1015227531
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.8 bits)