RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy14207
(343 letters)
>d1a44a_ b.17.1.1 (A:) Phosphatidylethanolamine binding protein,
PEBP {Cow (Bos taurus) [TaxId: 9913]}
Length = 185
Score = 187 bits (477), Expect = 1e-59
Identities = 84/158 (53%), Positives = 107/158 (67%), Gaps = 8/158 (5%)
Query: 29 KVEYPGGVSVNLGNVLTPTQVKDQPT-VTWNA-DPNQSYVLCMTVNHPIPDPDAPSRKEH 86
+V+Y G LG VLTPTQVK++PT +TW+ DP + Y L +T DPDAPSRK+
Sbjct: 25 QVKYGGAEVDELGKVLTPTQVKNRPTSITWDGLDPGKLYTLVLT------DPDAPSRKDP 78
Query: 87 TYREWHHWLVGNIKGGKLDGADFLSAYVGAGPPPNTGLHRYVFLVYKQPNSITFDEARLP 146
YREWHH+LV N+KG + LS YVG+GPP TGLHRYV+LVY+Q + DE L
Sbjct: 79 KYREWHHFLVVNMKGNNISSGTVLSDYVGSGPPKGTGLHRYVWLVYEQEGPLKCDEPILS 138
Query: 147 NNSQDGRAKFSIANFAEKYKLGEPIAVNFFQAEYDDYV 184
N S D R KF +A+F +KY+LG P+A +QAE+DDYV
Sbjct: 139 NRSGDHRGKFKVASFRKKYELGAPVAGTCYQAEWDDYV 176
Score = 160 bits (406), Expect = 6e-49
Identities = 76/143 (53%), Positives = 95/143 (66%), Gaps = 8/143 (5%)
Query: 184 VEYPGGVSVNLGNVLTPTQVKDQPT-VTWNA-DPNQSYVLCMTVNHPIPDPDAPSRKEHT 241
V+Y G LG VLTPTQVK++PT +TW+ DP + Y L +T DPDAPSRK+
Sbjct: 26 VKYGGAEVDELGKVLTPTQVKNRPTSITWDGLDPGKLYTLVLT------DPDAPSRKDPK 79
Query: 242 YREWHHWLVGNIKGGKLDGADFLSAYVGAGPPPNTGLHRYVFLVYKQPNSITFDEARLPN 301
YREWHH+LV N+KG + LS YVG+GPP TGLHRYV+LVY+Q + DE L N
Sbjct: 80 YREWHHFLVVNMKGNNISSGTVLSDYVGSGPPKGTGLHRYVWLVYEQEGPLKCDEPILSN 139
Query: 302 NSQDGRAKFSIANFAEKYKLGEP 324
S D R KF +A+F +KY+LG P
Sbjct: 140 RSGDHRGKFKVASFRKKYELGAP 162
>d1wpxb1 b.17.1.1 (B:501-719) Carboxypeptidase Y inhibitor {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 219
Score = 146 bits (370), Expect = 3e-43
Identities = 48/188 (25%), Positives = 74/188 (39%), Gaps = 44/188 (23%)
Query: 29 KVEYPGGVSVNLGNVLTPTQVKDQPTVTWN----------------ADPNQSYVLCMTVN 72
VEY V +GN L + + +P + + + L MT
Sbjct: 37 AVEYSSSAPVAMGNTLPTEKARSKPQFQFTFNKQMQKSVPQANAYVPQDDDLFTLVMT-- 94
Query: 73 HPIPDPDAPSRKEHTYREWHHWLVGNIK------------------GGKLDGADFLSAYV 114
DPDAPS+ +H + E+ H + ++K G++ L Y+
Sbjct: 95 ----DPDAPSKTDHKWSEFCHLVECDLKLLNEATHETSGATEFFASEFNTKGSNTLIEYM 150
Query: 115 GAGPPPNTGLHRYVFLVYKQPNSITFDEARLP---NNSQDGRAKFSIANFAEKYKLGEPI 171
G PP +G HRYVFL+YKQP + + N G + +A++ L +
Sbjct: 151 GPAPPKGSGPHRYVFLLYKQPKGVDSSKFSKIKDRPNWGYGTPATGVGKWAKENNLQ-LV 209
Query: 172 AVNFFQAE 179
A NFF AE
Sbjct: 210 ASNFFYAE 217
Score = 131 bits (329), Expect = 3e-37
Identities = 42/176 (23%), Positives = 67/176 (38%), Gaps = 43/176 (24%)
Query: 184 VEYPGGVSVNLGNVLTPTQVKDQPTVTWN----------------ADPNQSYVLCMTVNH 227
VEY V +GN L + + +P + + + L MT
Sbjct: 38 VEYSSSAPVAMGNTLPTEKARSKPQFQFTFNKQMQKSVPQANAYVPQDDDLFTLVMT--- 94
Query: 228 PIPDPDAPSRKEHTYREWHHWLVGNIK------------------GGKLDGADFLSAYVG 269
DPDAPS+ +H + E+ H + ++K G++ L Y+G
Sbjct: 95 ---DPDAPSKTDHKWSEFCHLVECDLKLLNEATHETSGATEFFASEFNTKGSNTLIEYMG 151
Query: 270 AGPPPNTGLHRYVFLVYKQPNSITFDEARLP---NNSQDGRAKFSIANFAEKYKLG 322
PP +G HRYVFL+YKQP + + N G + +A++ L
Sbjct: 152 PAPPKGSGPHRYVFLLYKQPKGVDSSKFSKIKDRPNWGYGTPATGVGKWAKENNLQ 207
>d1qoua_ b.17.1.1 (A:) Centroradialis protein Cen {Garden snapdragon
(Antirrhinum majus) [TaxId: 4151]}
Length = 164
Score = 141 bits (356), Expect = 9e-42
Identities = 45/155 (29%), Positives = 63/155 (40%), Gaps = 15/155 (9%)
Query: 29 KVEYPGGVS---VNLGNVLTPTQVKDQPTVTW-NADPNQSYVLCMTVNHPIPDPDAPSRK 84
V Y S V G+ L P+ V P V D + L MT DPD P
Sbjct: 18 SVIYNSNNSIKHVYNGHELFPSAVTSTPRVEVHGGDMRSFFTLIMT------DPDVPGPS 71
Query: 85 EHTYREWHHWLVGNIKGGKLDGADFLSAYVGAGPPPNTGLHRYVFLVYKQPNSITFDEAR 144
+ RE HW+V +I G P PN G+HR+VFL++KQ
Sbjct: 72 DPYLREHLHWIVTDIPGTTDSSFGK-EVVSYEMPRPNIGIHRFVFLLFKQKK----RGQA 126
Query: 145 LPNNSQDGRAKFSIANFAEKYKLGEPIAVNFFQAE 179
+ + R F+ F ++ +LG P+A FF +
Sbjct: 127 MLSPPVVCRDGFNTRKFTQENELGLPVAAVFFNCQ 161
Score = 124 bits (312), Expect = 2e-35
Identities = 42/145 (28%), Positives = 58/145 (40%), Gaps = 15/145 (10%)
Query: 184 VEYPGGVS---VNLGNVLTPTQVKDQPTVTW-NADPNQSYVLCMTVNHPIPDPDAPSRKE 239
V Y S V G+ L P+ V P V D + L MT DPD P +
Sbjct: 19 VIYNSNNSIKHVYNGHELFPSAVTSTPRVEVHGGDMRSFFTLIMT------DPDVPGPSD 72
Query: 240 HTYREWHHWLVGNIKGGKLDGADFLSAYVGAGPPPNTGLHRYVFLVYKQPNSITFDEARL 299
RE HW+V +I G P PN G+HR+VFL++KQ +
Sbjct: 73 PYLREHLHWIVTDIPGTTDSSFGK-EVVSYEMPRPNIGIHRFVFLLFKQKK----RGQAM 127
Query: 300 PNNSQDGRAKFSIANFAEKYKLGEP 324
+ R F+ F ++ +LG P
Sbjct: 128 LSPPVVCRDGFNTRKFTQENELGLP 152
>d1fuxa_ b.17.1.2 (A:) Hypothetical protein YbcL {Escherichia coli
[TaxId: 562]}
Length = 165
Score = 53.2 bits (127), Expect = 3e-09
Identities = 31/128 (24%), Positives = 45/128 (35%), Gaps = 43/128 (33%)
Query: 37 SVNLGNVLTPTQVKDQ---------PTVTWNADP--NQSYVLCMTVNHPIPDPDAPSRKE 85
+ G LT + V P++TW+ P +S+ + + DPDAP+
Sbjct: 8 EIKTGEQLTTSHVFSGFGCEGGNTSPSLTWSGVPEGTKSFAVTVY------DPDAPTG-- 59
Query: 86 HTYREWHHWLVGNIKG---------GKLDGADFLS------------AYVGAGPPPNTGL 124
W HW V NI G+ DG + + GA PP
Sbjct: 60 ---SGWWHWTVVNIPATVTYLPVDAGRRDGTKLPTGAVQGRNDFGYAGFGGACPPKGDKP 116
Query: 125 HRYVFLVY 132
H Y F V+
Sbjct: 117 HHYQFKVW 124
Score = 53.2 bits (127), Expect = 3e-09
Identities = 31/128 (24%), Positives = 45/128 (35%), Gaps = 43/128 (33%)
Query: 191 SVNLGNVLTPTQVKDQ---------PTVTWNADP--NQSYVLCMTVNHPIPDPDAPSRKE 239
+ G LT + V P++TW+ P +S+ + + DPDAP+
Sbjct: 8 EIKTGEQLTTSHVFSGFGCEGGNTSPSLTWSGVPEGTKSFAVTVY------DPDAPTG-- 59
Query: 240 HTYREWHHWLVGNIKG---------GKLDGADFLS------------AYVGAGPPPNTGL 278
W HW V NI G+ DG + + GA PP
Sbjct: 60 ---SGWWHWTVVNIPATVTYLPVDAGRRDGTKLPTGAVQGRNDFGYAGFGGACPPKGDKP 116
Query: 279 HRYVFLVY 286
H Y F V+
Sbjct: 117 HHYQFKVW 124
>d1fjja_ b.17.1.2 (A:) Hypothetical protein YbhB {Escherichia coli
[TaxId: 562]}
Length = 159
Score = 46.5 bits (110), Expect = 5e-07
Identities = 25/101 (24%), Positives = 35/101 (34%), Gaps = 32/101 (31%)
Query: 53 PTVTWNADPN--QSYVLCMTVNHPIPDPDAPSRKEHTYREWHHWLVGNI----------- 99
P + W+ P +S+V+ DPDAP+ W HW+V N+
Sbjct: 33 PHLAWDDVPAGTKSFVVTCY------DPDAPTG-----SGWWHWVVVNLPADTRVLPQGF 81
Query: 100 --------KGGKLDGADFLSAYVGAGPPPNTGLHRYVFLVY 132
G DF PP HRY+F V+
Sbjct: 82 GSGLVAMPDGVLQTRTDFGKTGYDGAAPPKGETHRYIFTVH 122
Score = 46.5 bits (110), Expect = 5e-07
Identities = 25/101 (24%), Positives = 35/101 (34%), Gaps = 32/101 (31%)
Query: 207 PTVTWNADPN--QSYVLCMTVNHPIPDPDAPSRKEHTYREWHHWLVGNI----------- 253
P + W+ P +S+V+ DPDAP+ W HW+V N+
Sbjct: 33 PHLAWDDVPAGTKSFVVTCY------DPDAPTG-----SGWWHWVVVNLPADTRVLPQGF 81
Query: 254 --------KGGKLDGADFLSAYVGAGPPPNTGLHRYVFLVY 286
G DF PP HRY+F V+
Sbjct: 82 GSGLVAMPDGVLQTRTDFGKTGYDGAAPPKGETHRYIFTVH 122
>d2pxrc1 a.73.1.1 (C:1-145) HIV-1 capsid protein {Human
immunodeficiency virus type 1 [TaxId: 11676]}
Length = 145
Score = 27.0 bits (60), Expect = 1.8
Identities = 21/83 (25%), Positives = 28/83 (33%), Gaps = 24/83 (28%)
Query: 9 EGARSYPRCHQNSALRTAQGKVEYPGGVSVNLGNVLTPTQVKDQPTVTWNADPNQSYVLC 68
E A + R H A A G++ P G + G T Q + W
Sbjct: 75 EEAAEWDRLHPVHAGPIAPGQMREPRGSDI-AGTTSTL-----QEQIGW----------- 117
Query: 69 MTVNHPIPDPDAPSRKEHTYREW 91
MT N PIP + Y+ W
Sbjct: 118 MTHNPPIPVGE-------IYKRW 133
>d1frfl_ e.18.1.1 (L:) Nickel-iron hydrogenase, large subunit
{Desulfovibrio fructosovorans [TaxId: 878]}
Length = 543
Score = 27.1 bits (59), Expect = 3.4
Identities = 13/53 (24%), Positives = 19/53 (35%), Gaps = 13/53 (24%)
Query: 42 NVLTPTQVKDQPTVTWNADP-----NQSYVLCMTVNHPIPDPDAPSRKEHTYR 89
++ P+ TWN P ++S V + PI DP P T
Sbjct: 488 QLVVPS--------TWNLGPRGPQGDKSPVEEALIGTPIADPKRPVEILRTVH 532
Score = 27.1 bits (59), Expect = 3.4
Identities = 13/53 (24%), Positives = 19/53 (35%), Gaps = 13/53 (24%)
Query: 196 NVLTPTQVKDQPTVTWNADP-----NQSYVLCMTVNHPIPDPDAPSRKEHTYR 243
++ P+ TWN P ++S V + PI DP P T
Sbjct: 488 QLVVPS--------TWNLGPRGPQGDKSPVEEALIGTPIADPKRPVEILRTVH 532
>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId:
161736]}
Length = 321
Score = 26.9 bits (59), Expect = 3.7
Identities = 6/39 (15%), Positives = 9/39 (23%), Gaps = 4/39 (10%)
Query: 104 LDGADFLSAYVGAGPPPNTGLHRYVFLVYKQPNSITFDE 142
+ + LS Y + Q I D
Sbjct: 156 VRFGEPLSGYNTDFN----VFVDDIARAMLQHRVIVIDS 190
Score = 26.9 bits (59), Expect = 3.7
Identities = 6/39 (15%), Positives = 9/39 (23%), Gaps = 4/39 (10%)
Query: 258 LDGADFLSAYVGAGPPPNTGLHRYVFLVYKQPNSITFDE 296
+ + LS Y + Q I D
Sbjct: 156 VRFGEPLSGYNTDFN----VFVDDIARAMLQHRVIVIDS 190
>d1e3db_ e.18.1.1 (B:) Nickel-iron hydrogenase, large subunit
{Desulfovibrio desulfuricans [TaxId: 876]}
Length = 537
Score = 26.7 bits (58), Expect = 4.9
Identities = 12/53 (22%), Positives = 16/53 (30%), Gaps = 13/53 (24%)
Query: 42 NVLTPTQVKDQPTVTWNADPNQSYVLC-----MTVNHPIPDPDAPSRKEHTYR 89
++ PT TWN P + V P+ DP P T
Sbjct: 482 QLVVPT--------TWNLGPRDDKGVPSAAEAALVGTPVADPKRPVEILRTIH 526
Score = 26.7 bits (58), Expect = 4.9
Identities = 12/53 (22%), Positives = 16/53 (30%), Gaps = 13/53 (24%)
Query: 196 NVLTPTQVKDQPTVTWNADPNQSYVLC-----MTVNHPIPDPDAPSRKEHTYR 243
++ PT TWN P + V P+ DP P T
Sbjct: 482 QLVVPT--------TWNLGPRDDKGVPSAAEAALVGTPVADPKRPVEILRTIH 526
>d1wuil1 e.18.1.1 (L:19-552) Nickel-iron hydrogenase, large subunit
{Desulfovibrio vulgaris [TaxId: 881]}
Length = 534
Score = 26.3 bits (57), Expect = 6.2
Identities = 8/53 (15%), Positives = 13/53 (24%), Gaps = 13/53 (24%)
Query: 42 NVLTPTQVKDQPTVTWNADPNQSYVLC-----MTVNHPIPDPDAPSRKEHTYR 89
++ P+ TW P + P+ D P T
Sbjct: 479 QLVVPS--------TWTLGPRCDKNKLSPVEASLIGTPVADAKRPVEILRTVH 523
Score = 26.3 bits (57), Expect = 6.2
Identities = 8/53 (15%), Positives = 13/53 (24%), Gaps = 13/53 (24%)
Query: 196 NVLTPTQVKDQPTVTWNADPNQSYVLC-----MTVNHPIPDPDAPSRKEHTYR 243
++ P+ TW P + P+ D P T
Sbjct: 479 QLVVPS--------TWTLGPRCDKNKLSPVEASLIGTPVADAKRPVEILRTVH 523
>d1yq9h1 e.18.1.1 (H:7-536) Nickel-iron hydrogenase, large subunit
{Desulfovibrio gigas [TaxId: 879]}
Length = 530
Score = 26.0 bits (56), Expect = 7.3
Identities = 13/53 (24%), Positives = 17/53 (32%), Gaps = 13/53 (24%)
Query: 42 NVLTPTQVKDQPTVTWNADP-----NQSYVLCMTVNHPIPDPDAPSRKEHTYR 89
++ P+ TWN P S V + PI DP P T
Sbjct: 475 QLVVPS--------TWNLGPRCAEGKLSAVEQALIGTPIADPKRPVEILRTVH 519
Score = 26.0 bits (56), Expect = 7.3
Identities = 13/53 (24%), Positives = 17/53 (32%), Gaps = 13/53 (24%)
Query: 196 NVLTPTQVKDQPTVTWNADP-----NQSYVLCMTVNHPIPDPDAPSRKEHTYR 243
++ P+ TWN P S V + PI DP P T
Sbjct: 475 QLVVPS--------TWNLGPRCAEGKLSAVEQALIGTPIADPKRPVEILRTVH 519
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.136 0.429
Gapped
Lambda K H
0.267 0.0660 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,399,895
Number of extensions: 68147
Number of successful extensions: 180
Number of sequences better than 10.0: 1
Number of HSP's gapped: 158
Number of HSP's successfully gapped: 23
Length of query: 343
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 257
Effective length of database: 1,226,816
Effective search space: 315291712
Effective search space used: 315291712
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.3 bits)