Query psy14208
Match_columns 778
No_of_seqs 205 out of 1074
Neff 8.4
Searched_HMMs 29240
Date Fri Aug 16 22:13:15 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14208.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14208hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ldj_A Cullin homolog 1, CUL-1 100.0 4E-135 1E-139 1204.9 65.6 726 10-778 1-760 (760)
2 2hye_C Cullin-4A, CUL-4A; beta 100.0 1E-130 5E-135 1166.0 65.8 699 7-778 56-759 (759)
3 3dpl_C Cullin-5; ubiquitin, NE 100.0 4.7E-86 1.6E-90 723.2 35.4 379 400-778 3-382 (382)
4 2wzk_A Cullin-5, CUL-5; UBL co 100.0 4.2E-67 1.4E-71 578.5 41.7 376 1-385 6-385 (391)
5 4ap2_B Cullin-3, CUL-3; ubiqui 100.0 4.8E-65 1.7E-69 564.0 33.1 361 8-414 28-395 (410)
6 4eoz_B Cullin-3, CUL-3; E3 ubi 100.0 8.7E-63 3E-67 539.4 26.4 348 7-380 10-364 (364)
7 4a64_A Cullin-4B, CUL4B, CUL-4 100.0 2.8E-61 9.5E-66 525.5 33.2 343 6-380 6-352 (354)
8 3o2p_E Cell division control p 99.9 5.9E-27 2E-31 196.3 6.3 81 697-778 8-88 (88)
9 3tdu_C Cullin-1, CUL-1; E2:E3, 99.9 2.8E-27 9.4E-32 193.6 3.9 76 703-778 2-77 (77)
10 1iuy_A Cullin-3 homologue; win 99.9 2.2E-27 7.6E-32 201.2 2.5 86 693-778 7-92 (92)
11 2do7_A Cullin-4B, CUL-4B; heli 99.9 2.1E-26 7.1E-31 197.9 5.3 84 693-778 12-95 (101)
12 1wi9_A Protein C20ORF116 homol 81.4 0.72 2.5E-05 36.3 2.2 55 716-778 11-65 (72)
13 3cuo_A Uncharacterized HTH-typ 80.4 3.6 0.00012 34.2 6.6 49 594-649 23-71 (99)
14 3jth_A Transcription activator 77.4 5.4 0.00018 33.3 6.8 47 595-649 23-69 (98)
15 1p6r_A Penicillinase repressor 73.6 2.6 9E-05 34.0 3.6 58 715-777 12-69 (82)
16 1bby_A RAP30; average structur 72.8 5.1 0.00017 31.4 4.8 57 597-671 10-66 (69)
17 1qgp_A Protein (double strande 72.8 4.6 0.00016 32.5 4.8 48 598-650 17-65 (77)
18 1sfx_A Conserved hypothetical 72.7 3.3 0.00011 34.9 4.3 50 593-649 18-67 (109)
19 3pqk_A Biofilm growth-associat 72.3 8.6 0.00029 32.3 6.8 47 595-649 23-69 (102)
20 1y0u_A Arsenical resistance op 71.7 8.2 0.00028 32.1 6.4 47 594-649 30-76 (96)
21 2k4b_A Transcriptional regulat 70.0 1.5 5E-05 37.4 1.3 60 714-778 37-96 (99)
22 3lwf_A LIN1550 protein, putati 69.5 12 0.0004 34.7 7.5 60 596-669 30-89 (159)
23 3lmm_A Uncharacterized protein 69.1 3.3 0.00011 47.1 4.4 139 594-771 429-567 (583)
24 3t8r_A Staphylococcus aureus C 68.8 12 0.00042 33.8 7.4 47 597-649 15-61 (143)
25 2jt1_A PEFI protein; solution 68.2 5.7 0.0002 31.9 4.4 37 610-651 23-59 (77)
26 3r0a_A Putative transcriptiona 68.1 5.1 0.00017 35.3 4.5 52 592-649 23-75 (123)
27 2fu4_A Ferric uptake regulatio 67.0 5.8 0.0002 32.0 4.3 53 592-650 14-72 (83)
28 1oyi_A Double-stranded RNA-bin 67.0 6.7 0.00023 31.9 4.6 44 599-650 21-64 (82)
29 3hsr_A HTH-type transcriptiona 66.8 6.9 0.00024 34.9 5.3 51 593-650 34-84 (140)
30 3tgn_A ADC operon repressor AD 66.7 8 0.00027 34.5 5.8 51 592-650 35-85 (146)
31 2xub_A DNA-directed RNA polyme 66.3 15 0.00051 41.3 9.0 127 610-769 32-162 (534)
32 2htj_A P fimbrial regulatory p 66.3 12 0.00042 29.9 6.2 44 599-649 4-47 (81)
33 1u2w_A CADC repressor, cadmium 66.2 9.1 0.00031 33.5 5.8 48 595-649 42-89 (122)
34 3eco_A MEPR; mutlidrug efflux 66.0 6.3 0.00022 34.9 4.8 53 593-650 29-81 (139)
35 2dk5_A DNA-directed RNA polyme 65.9 3.5 0.00012 34.4 2.8 47 591-637 16-62 (91)
36 1qbj_A Protein (double-strande 65.7 11 0.00036 30.7 5.6 49 597-650 12-61 (81)
37 2v79_A DNA replication protein 65.3 5.1 0.00017 36.1 4.0 28 739-766 56-83 (135)
38 3r4k_A Transcriptional regulat 65.1 6.4 0.00022 39.7 5.1 59 598-671 9-67 (260)
39 1xn7_A Hypothetical protein YH 64.8 3.9 0.00013 33.0 2.8 44 716-767 6-49 (78)
40 3cdh_A Transcriptional regulat 64.1 11 0.00037 34.1 6.2 50 593-649 41-90 (155)
41 3ech_A MEXR, multidrug resista 63.4 5.9 0.0002 35.4 4.1 51 593-650 35-85 (142)
42 3g3z_A NMB1585, transcriptiona 63.2 6.8 0.00023 35.1 4.5 51 593-650 29-79 (145)
43 3bpv_A Transcriptional regulat 62.1 8.4 0.00029 33.9 4.9 50 593-649 27-76 (138)
44 2kko_A Possible transcriptiona 62.1 6.1 0.00021 33.8 3.7 45 597-649 27-71 (108)
45 1r1u_A CZRA, repressor protein 62.1 10 0.00035 32.2 5.2 47 595-649 26-72 (106)
46 1tbx_A ORF F-93, hypothetical 61.7 8.5 0.00029 32.0 4.5 50 593-649 6-59 (99)
47 2xrn_A HTH-type transcriptiona 61.2 9.3 0.00032 37.9 5.5 58 598-670 9-66 (241)
48 2fu4_A Ferric uptake regulatio 61.2 9.6 0.00033 30.6 4.6 59 715-776 20-80 (83)
49 3nrv_A Putative transcriptiona 60.7 9.4 0.00032 34.2 5.0 51 593-650 38-88 (148)
50 2frh_A SARA, staphylococcal ac 60.6 8.1 0.00028 33.9 4.4 53 593-650 35-87 (127)
51 3bro_A Transcriptional regulat 60.5 10 0.00035 33.5 5.2 53 593-650 32-84 (141)
52 3oop_A LIN2960 protein; protei 60.2 6.8 0.00023 35.0 3.9 51 593-650 35-85 (143)
53 1tbx_A ORF F-93, hypothetical 59.9 8 0.00027 32.2 4.1 56 716-775 12-67 (99)
54 2e1c_A Putative HTH-type trans 59.5 8.2 0.00028 36.2 4.4 63 572-639 7-69 (171)
55 4b8x_A SCO5413, possible MARR- 59.3 8.5 0.00029 34.8 4.4 53 593-650 33-85 (147)
56 2d1h_A ST1889, 109AA long hypo 59.2 8.1 0.00028 32.4 4.0 51 594-650 20-70 (109)
57 2y75_A HTH-type transcriptiona 59.1 22 0.00075 31.2 7.1 35 610-649 25-59 (129)
58 1sfu_A 34L protein; protein/Z- 58.6 15 0.00052 29.2 5.0 35 601-637 21-55 (75)
59 4hbl_A Transcriptional regulat 58.5 8.5 0.00029 34.7 4.3 51 593-650 39-89 (149)
60 3bja_A Transcriptional regulat 58.5 8.6 0.0003 33.9 4.3 50 593-649 31-80 (139)
61 3k69_A Putative transcription 58.4 13 0.00045 34.4 5.6 47 596-649 15-61 (162)
62 2nnn_A Probable transcriptiona 58.4 9.2 0.00031 33.7 4.5 50 593-649 36-85 (140)
63 2fbh_A Transcriptional regulat 58.3 9.7 0.00033 33.9 4.6 51 593-650 35-86 (146)
64 1xn7_A Hypothetical protein YH 58.2 8.5 0.00029 31.0 3.7 37 600-638 7-43 (78)
65 2v79_A DNA replication protein 58.0 10 0.00035 34.0 4.6 55 590-649 27-84 (135)
66 3k0l_A Repressor protein; heli 57.9 8.8 0.0003 35.2 4.3 51 593-650 44-94 (162)
67 2qww_A Transcriptional regulat 57.8 10 0.00035 34.2 4.7 49 593-648 39-87 (154)
68 2k02_A Ferrous iron transport 57.8 4.5 0.00016 33.4 2.0 45 716-768 6-50 (87)
69 2fa5_A Transcriptional regulat 57.4 11 0.00038 34.2 5.0 50 593-649 47-96 (162)
70 2k02_A Ferrous iron transport 57.4 9.8 0.00034 31.3 4.0 38 600-639 7-44 (87)
71 3bj6_A Transcriptional regulat 57.2 11 0.00036 34.0 4.7 51 593-650 38-88 (152)
72 2jsc_A Transcriptional regulat 57.1 14 0.00048 32.0 5.3 48 594-649 20-67 (118)
73 2pex_A Transcriptional regulat 56.7 11 0.00037 34.0 4.8 50 593-649 45-94 (153)
74 3f6o_A Probable transcriptiona 56.7 12 0.00041 32.5 4.8 47 595-649 18-64 (118)
75 3nqo_A MARR-family transcripti 56.4 9.3 0.00032 36.2 4.3 53 593-650 39-91 (189)
76 2l02_A Uncharacterized protein 56.4 19 0.00066 29.0 5.3 40 599-640 12-51 (82)
77 2a61_A Transcriptional regulat 56.1 9.8 0.00034 33.8 4.3 50 593-649 31-80 (145)
78 2yu3_A DNA-directed RNA polyme 56.0 10 0.00034 31.8 3.8 46 592-637 34-79 (95)
79 3fm5_A Transcriptional regulat 56.0 11 0.00037 33.9 4.6 52 593-650 37-88 (150)
80 2gxg_A 146AA long hypothetical 55.5 17 0.00058 32.2 5.8 50 593-650 35-84 (146)
81 4aik_A Transcriptional regulat 55.3 15 0.00051 33.4 5.4 52 593-650 29-80 (151)
82 2bv6_A MGRA, HTH-type transcri 55.3 8.4 0.00029 34.2 3.6 51 593-650 35-85 (142)
83 1jgs_A Multiple antibiotic res 55.2 9.9 0.00034 33.5 4.1 50 593-649 32-81 (138)
84 1sd4_A Penicillinase repressor 55.2 6.9 0.00024 34.2 3.0 59 714-777 12-70 (126)
85 3cjn_A Transcriptional regulat 55.1 11 0.00039 34.2 4.6 50 593-649 50-99 (162)
86 1ub9_A Hypothetical protein PH 55.0 10 0.00036 31.2 4.0 43 594-638 15-57 (100)
87 3e6m_A MARR family transcripti 54.9 9.8 0.00034 34.8 4.1 51 593-650 51-101 (161)
88 3bdd_A Regulatory protein MARR 54.8 10 0.00035 33.5 4.2 51 593-650 29-79 (142)
89 2fbi_A Probable transcriptiona 54.8 10 0.00035 33.5 4.1 50 593-649 34-83 (142)
90 2vn2_A DNAD, chromosome replic 54.7 14 0.0005 32.6 5.0 54 592-650 29-85 (128)
91 2heo_A Z-DNA binding protein 1 54.2 8 0.00027 30.0 2.8 42 596-638 11-52 (67)
92 3mq0_A Transcriptional repress 54.1 11 0.00036 38.4 4.6 57 598-670 33-89 (275)
93 3f8b_A Transcriptional regulat 54.0 22 0.00076 30.8 6.0 58 709-767 9-66 (116)
94 3r0a_A Putative transcriptiona 53.8 10 0.00034 33.3 3.8 58 712-777 26-89 (123)
95 3deu_A Transcriptional regulat 52.9 14 0.00047 34.1 4.8 52 593-650 51-102 (166)
96 2nyx_A Probable transcriptiona 52.5 10 0.00036 35.0 3.9 50 593-649 43-92 (168)
97 1ku9_A Hypothetical protein MJ 52.3 16 0.00056 32.4 5.2 49 594-650 25-75 (152)
98 2rdp_A Putative transcriptiona 51.9 12 0.00041 33.5 4.2 50 593-649 40-89 (150)
99 1lj9_A Transcriptional regulat 51.9 11 0.00036 33.6 3.7 50 593-649 27-76 (144)
100 2eth_A Transcriptional regulat 51.9 12 0.00043 33.7 4.3 50 593-649 42-91 (154)
101 1ylf_A RRF2 family protein; st 51.6 24 0.00081 32.0 6.1 47 596-649 17-63 (149)
102 2oqg_A Possible transcriptiona 51.4 18 0.00061 30.7 5.0 48 594-649 20-67 (114)
103 1s3j_A YUSO protein; structura 51.4 10 0.00036 34.1 3.7 51 593-650 35-85 (155)
104 3s2w_A Transcriptional regulat 51.4 9.2 0.00031 34.9 3.3 50 594-650 49-98 (159)
105 3jw4_A Transcriptional regulat 51.4 7.6 0.00026 34.9 2.7 53 593-650 39-91 (148)
106 2wte_A CSA3; antiviral protein 51.0 18 0.00062 36.0 5.6 50 593-649 150-199 (244)
107 1bja_A Transcription regulator 51.0 17 0.00058 30.4 4.4 44 592-637 13-57 (95)
108 2obp_A Putative DNA-binding pr 50.7 18 0.0006 30.4 4.5 46 593-638 14-63 (96)
109 3f3x_A Transcriptional regulat 50.2 15 0.00051 32.6 4.5 50 593-650 35-84 (144)
110 1r1t_A Transcriptional repress 49.6 27 0.00094 30.4 6.0 41 595-638 46-86 (122)
111 2w25_A Probable transcriptiona 49.2 19 0.00063 32.6 5.0 45 593-639 5-49 (150)
112 2o0y_A Transcriptional regulat 49.2 15 0.00052 36.8 4.8 56 599-670 27-82 (260)
113 3kp7_A Transcriptional regulat 49.1 13 0.00044 33.5 3.8 48 593-648 36-83 (151)
114 1qgp_A Protein (double strande 48.9 11 0.00037 30.2 2.8 52 715-774 17-71 (77)
115 2hr3_A Probable transcriptiona 48.7 17 0.00057 32.4 4.5 52 593-650 33-84 (147)
116 1z91_A Organic hydroperoxide r 48.6 12 0.00042 33.3 3.6 51 593-650 38-88 (147)
117 2vn2_A DNAD, chromosome replic 48.4 11 0.00037 33.4 3.1 28 741-768 58-85 (128)
118 2g9w_A Conserved hypothetical 48.4 14 0.00048 33.0 3.9 59 714-777 11-70 (138)
119 2pn6_A ST1022, 150AA long hypo 48.2 23 0.00077 31.9 5.4 43 595-639 3-45 (150)
120 3boq_A Transcriptional regulat 47.1 13 0.00043 33.8 3.5 50 593-649 45-95 (160)
121 1xd7_A YWNA; structural genomi 47.0 35 0.0012 30.7 6.4 44 597-649 13-56 (145)
122 1okr_A MECI, methicillin resis 46.9 11 0.00037 32.7 2.8 56 717-777 15-70 (123)
123 3u2r_A Regulatory protein MARR 46.7 12 0.00041 34.4 3.3 53 593-650 44-96 (168)
124 1p6r_A Penicillinase repressor 46.0 21 0.00073 28.4 4.3 51 593-650 7-61 (82)
125 2fxa_A Protease production reg 44.8 16 0.00053 35.3 3.9 51 593-650 46-96 (207)
126 1xmk_A Double-stranded RNA-spe 44.5 19 0.00067 28.9 3.7 40 596-637 12-52 (79)
127 2cfx_A HTH-type transcriptiona 44.0 26 0.00088 31.4 5.0 43 594-638 4-46 (144)
128 2g7u_A Transcriptional regulat 43.8 31 0.0011 34.4 6.1 57 597-670 16-72 (257)
129 1mkm_A ICLR transcriptional re 43.7 27 0.00092 34.7 5.6 57 598-670 11-67 (249)
130 2qlz_A Transcription factor PF 43.1 27 0.00092 34.4 5.3 40 596-638 166-205 (232)
131 2ia0_A Putative HTH-type trans 43.0 24 0.00082 32.8 4.8 47 591-639 13-59 (171)
132 2ia2_A Putative transcriptiona 43.0 30 0.001 34.7 5.8 56 598-670 24-79 (265)
133 1qbj_A Protein (double-strande 42.6 23 0.00079 28.6 3.9 53 714-774 12-67 (81)
134 1fse_A GERE; helix-turn-helix 41.5 38 0.0013 25.9 5.1 40 593-636 12-51 (74)
135 2htj_A P fimbrial regulatory p 40.9 35 0.0012 27.1 4.9 44 716-767 4-47 (81)
136 2cg4_A Regulatory protein ASNC 40.9 26 0.0009 31.6 4.6 44 593-638 6-49 (152)
137 3f6v_A Possible transcriptiona 40.8 27 0.00093 31.8 4.6 47 594-648 57-103 (151)
138 1p4x_A Staphylococcal accessor 40.8 29 0.00098 34.6 5.2 53 593-650 156-208 (250)
139 2dbb_A Putative HTH-type trans 40.7 28 0.00097 31.3 4.8 44 593-638 7-50 (151)
140 2p5k_A Arginine repressor; DNA 40.5 31 0.0011 25.7 4.3 37 597-635 7-48 (64)
141 4a5n_A Uncharacterized HTH-typ 40.1 36 0.0012 30.2 5.2 47 596-650 27-74 (131)
142 2hzt_A Putative HTH-type trans 38.3 42 0.0014 28.2 5.2 45 597-649 16-61 (107)
143 1je8_A Nitrate/nitrite respons 38.2 43 0.0015 26.7 5.0 40 593-636 22-61 (82)
144 1i1g_A Transcriptional regulat 38.2 26 0.00091 31.0 4.1 43 594-638 3-45 (141)
145 2jt1_A PEFI protein; solution 38.0 20 0.00069 28.7 2.8 55 709-771 5-61 (77)
146 1p4x_A Staphylococcal accessor 38.0 26 0.00089 34.9 4.4 53 593-650 32-84 (250)
147 2p4w_A Transcriptional regulat 37.9 51 0.0017 31.6 6.3 67 594-670 14-80 (202)
148 2p5v_A Transcriptional regulat 37.8 35 0.0012 31.2 5.0 45 593-639 8-52 (162)
149 1okr_A MECI, methicillin resis 37.2 19 0.00064 31.1 2.8 50 593-649 8-61 (123)
150 3omy_A Protein TRAM; DNA bindi 37.1 32 0.0011 25.0 3.4 42 155-203 9-50 (52)
151 3df8_A Possible HXLR family tr 36.9 42 0.0015 28.6 5.0 47 595-649 27-76 (111)
152 3kp7_A Transcriptional regulat 36.7 16 0.00056 32.7 2.4 52 713-773 39-94 (151)
153 1sfx_A Conserved hypothetical 36.6 22 0.00074 29.5 3.1 49 713-769 21-69 (109)
154 3cuo_A Uncharacterized HTH-typ 36.6 28 0.00097 28.4 3.8 54 713-774 25-78 (99)
155 2lkp_A Transcriptional regulat 36.6 34 0.0012 29.3 4.4 40 595-637 32-71 (119)
156 2cyy_A Putative HTH-type trans 36.5 34 0.0012 30.9 4.6 45 593-639 5-49 (151)
157 1xma_A Predicted transcription 35.8 37 0.0013 30.7 4.6 58 710-768 39-96 (145)
158 1tc3_C Protein (TC3 transposas 35.7 43 0.0015 22.9 4.2 31 599-633 13-43 (51)
159 2qww_A Transcriptional regulat 35.5 33 0.0011 30.7 4.3 45 714-766 43-87 (154)
160 2p7v_B Sigma-70, RNA polymeras 35.5 54 0.0019 24.8 5.0 27 610-636 24-50 (68)
161 2lnb_A Z-DNA-binding protein 1 35.3 24 0.00084 28.0 2.8 40 597-637 21-60 (80)
162 2frh_A SARA, staphylococcal ac 34.3 23 0.00079 30.9 3.0 33 744-776 63-98 (127)
163 1x3u_A Transcriptional regulat 33.6 56 0.0019 25.4 5.0 39 594-636 18-56 (79)
164 1sd4_A Penicillinase repressor 33.5 33 0.0011 29.6 3.9 51 592-649 7-61 (126)
165 3c57_A Two component transcrip 33.3 49 0.0017 27.2 4.7 40 593-636 28-67 (95)
166 2pg4_A Uncharacterized protein 33.2 30 0.001 28.4 3.3 40 597-637 17-57 (95)
167 2zkz_A Transcriptional repress 33.0 41 0.0014 27.9 4.2 41 594-637 26-67 (99)
168 2l01_A Uncharacterized protein 32.8 50 0.0017 26.3 4.2 39 599-639 14-53 (77)
169 4fx0_A Probable transcriptiona 32.8 44 0.0015 30.0 4.7 45 593-637 31-78 (148)
170 2jpc_A SSRB; DNA binding prote 32.6 44 0.0015 24.5 3.9 26 611-636 13-38 (61)
171 2qvo_A Uncharacterized protein 32.2 22 0.00076 29.2 2.4 44 594-637 11-56 (95)
172 3ulq_B Transcriptional regulat 31.9 57 0.0019 26.7 4.8 42 591-636 28-69 (90)
173 1eze_A Cholesteryl ester trans 31.9 17 0.0006 24.7 1.2 25 477-503 9-33 (38)
174 3i4p_A Transcriptional regulat 31.9 44 0.0015 30.6 4.6 40 598-639 6-45 (162)
175 2f2e_A PA1607; transcription f 31.8 48 0.0017 29.8 4.8 36 610-650 36-71 (146)
176 1z7u_A Hypothetical protein EF 31.7 38 0.0013 28.8 3.9 46 596-649 23-69 (112)
177 2dk5_A DNA-directed RNA polyme 31.3 40 0.0014 27.8 3.7 45 717-769 25-73 (91)
178 2o8x_A Probable RNA polymerase 30.9 57 0.002 24.5 4.5 39 594-636 17-56 (70)
179 2x48_A CAG38821; archeal virus 30.6 1.1E+02 0.0038 21.8 5.8 22 611-632 31-52 (55)
180 3i4p_A Transcriptional regulat 30.5 45 0.0016 30.5 4.4 47 713-767 4-50 (162)
181 2fbh_A Transcriptional regulat 30.0 62 0.0021 28.3 5.2 47 714-768 39-86 (146)
182 1yyv_A Putative transcriptiona 29.4 68 0.0023 28.2 5.2 48 594-649 34-82 (131)
183 3k0l_A Repressor protein; heli 29.1 60 0.0021 29.3 5.0 48 713-768 47-94 (162)
184 1hsj_A Fusion protein consisti 28.8 45 0.0015 36.4 4.8 53 593-650 402-454 (487)
185 2g9w_A Conserved hypothetical 28.7 71 0.0024 28.2 5.3 51 593-649 7-61 (138)
186 1q1h_A TFE, transcription fact 28.5 51 0.0017 27.7 4.1 35 610-649 32-66 (110)
187 2nyx_A Probable transcriptiona 28.5 44 0.0015 30.5 4.0 51 714-772 47-99 (168)
188 3hug_A RNA polymerase sigma fa 28.4 62 0.0021 26.3 4.5 38 594-635 39-77 (92)
189 2fsw_A PG_0823 protein; alpha- 28.2 69 0.0024 26.8 4.9 35 610-649 37-72 (107)
190 3tgn_A ADC operon repressor AD 27.9 56 0.0019 28.7 4.5 44 716-768 42-85 (146)
191 3g3z_A NMB1585, transcriptiona 27.7 37 0.0013 29.9 3.2 48 713-768 32-79 (145)
192 3jth_A Transcription activator 27.7 68 0.0023 26.2 4.7 53 715-776 26-78 (98)
193 1lj9_A Transcriptional regulat 26.8 63 0.0021 28.2 4.6 46 715-768 32-77 (144)
194 3cuq_B Vacuolar protein-sortin 26.7 1.4E+02 0.0046 29.0 7.2 85 543-650 113-202 (218)
195 3cdh_A Transcriptional regulat 26.4 54 0.0019 29.2 4.1 48 713-768 44-91 (155)
196 1uly_A Hypothetical protein PH 26.2 90 0.0031 29.5 5.8 48 594-649 19-66 (192)
197 3bpv_A Transcriptional regulat 26.1 45 0.0016 28.9 3.5 47 714-768 31-77 (138)
198 2ozu_A Histone acetyltransfera 26.0 48 0.0016 33.3 3.8 28 609-636 212-239 (284)
199 2pg4_A Uncharacterized protein 25.9 17 0.00057 30.0 0.4 47 720-774 23-71 (95)
200 2x4h_A Hypothetical protein SS 25.6 1E+02 0.0035 26.8 5.8 29 609-637 29-57 (139)
201 1jgs_A Multiple antibiotic res 25.5 63 0.0022 28.0 4.3 45 715-767 37-81 (138)
202 3eyy_A Putative iron uptake re 25.3 43 0.0015 30.1 3.2 57 717-776 24-80 (145)
203 3bja_A Transcriptional regulat 25.2 47 0.0016 28.8 3.4 50 715-772 36-87 (139)
204 1on2_A Transcriptional regulat 24.9 60 0.0021 28.6 4.1 35 610-649 21-55 (142)
205 1p4w_A RCSB; solution structur 24.9 73 0.0025 26.6 4.3 40 593-636 35-74 (99)
206 3cjn_A Transcriptional regulat 24.6 65 0.0022 28.9 4.4 47 714-768 54-100 (162)
207 3b73_A PHIH1 repressor-like pr 24.2 58 0.002 28.0 3.6 49 593-648 11-61 (111)
208 2fe3_A Peroxide operon regulat 24.2 75 0.0026 28.5 4.6 65 592-668 19-88 (145)
209 4dhx_B Enhancer of yellow 2 tr 24.1 97 0.0033 26.1 4.8 34 11-44 39-73 (101)
210 3to7_A Histone acetyltransfera 24.1 54 0.0018 32.8 3.7 40 596-636 194-233 (276)
211 2fa5_A Transcriptional regulat 23.9 63 0.0021 29.0 4.1 48 713-768 50-97 (162)
212 1mzb_A Ferric uptake regulatio 23.9 78 0.0027 28.0 4.6 52 715-769 21-74 (136)
213 3mwm_A ZUR, putative metal upt 23.9 89 0.003 27.7 5.0 58 716-776 18-76 (139)
214 2fbk_A Transcriptional regulat 23.7 29 0.00099 32.3 1.7 52 593-649 67-119 (181)
215 2rnj_A Response regulator prot 23.6 58 0.002 26.4 3.4 39 594-636 31-69 (91)
216 2q2k_A Hypothetical protein; p 23.3 39 0.0013 24.6 1.8 35 289-323 32-68 (70)
217 2rdp_A Putative transcriptiona 23.3 76 0.0026 27.9 4.5 44 716-767 46-89 (150)
218 3t72_q RNA polymerase sigma fa 23.1 97 0.0033 25.9 4.7 24 610-633 38-61 (99)
219 2qvo_A Uncharacterized protein 23.0 37 0.0012 27.9 2.0 28 744-772 40-67 (95)
220 1dp3_A TRAM protein; helix-loo 22.9 29 0.00098 25.6 1.1 44 156-205 9-53 (55)
221 1xsv_A Hypothetical UPF0122 pr 22.9 93 0.0032 26.5 4.7 40 594-636 27-66 (113)
222 3hsr_A HTH-type transcriptiona 22.9 44 0.0015 29.4 2.7 48 713-768 37-84 (140)
223 3bro_A Transcriptional regulat 22.6 53 0.0018 28.6 3.2 47 714-768 36-84 (141)
224 3eco_A MEPR; mutlidrug efflux 22.2 51 0.0017 28.7 3.0 46 714-767 33-80 (139)
225 1ku9_A Hypothetical protein MJ 22.1 46 0.0016 29.3 2.7 43 723-773 38-82 (152)
226 2fe3_A Peroxide operon regulat 21.8 74 0.0025 28.5 4.0 59 715-776 25-84 (145)
227 2eth_A Transcriptional regulat 21.8 68 0.0023 28.6 3.8 46 714-767 46-91 (154)
228 1i1g_A Transcriptional regulat 21.8 70 0.0024 28.1 3.8 48 713-768 5-52 (141)
229 2f2e_A PA1607; transcription f 21.5 76 0.0026 28.5 4.0 50 717-776 29-80 (146)
230 1yg2_A Gene activator APHA; vi 21.4 68 0.0023 29.9 3.8 56 712-768 2-57 (179)
231 2o03_A Probable zinc uptake re 21.2 88 0.003 27.4 4.3 51 593-649 9-64 (131)
232 2xig_A Ferric uptake regulatio 21.1 81 0.0028 28.4 4.2 59 715-776 30-89 (150)
233 4hbl_A Transcriptional regulat 21.1 58 0.002 28.9 3.2 48 713-768 42-89 (149)
234 1ufm_A COP9 complex subunit 4; 21.1 81 0.0028 25.5 3.6 32 609-640 28-59 (84)
235 4esf_A PADR-like transcription 21.0 1.6E+02 0.0053 25.3 5.8 57 708-767 7-63 (117)
236 2oqg_A Possible transcriptiona 20.9 52 0.0018 27.7 2.7 50 713-771 22-71 (114)
237 1s7o_A Hypothetical UPF0122 pr 20.7 89 0.003 26.7 4.1 41 593-636 23-63 (113)
238 1ku3_A Sigma factor SIGA; heli 20.6 1.2E+02 0.0041 23.2 4.5 26 610-635 29-54 (73)
239 2pex_A Transcriptional regulat 20.5 60 0.0021 28.8 3.1 46 715-768 50-95 (153)
240 3ech_A MEXR, multidrug resista 20.4 71 0.0024 27.9 3.6 49 713-769 38-86 (142)
241 2pn6_A ST1022, 150AA long hypo 20.2 93 0.0032 27.7 4.4 46 713-766 4-49 (150)
242 3hhh_A Transcriptional regulat 20.2 1E+02 0.0036 26.4 4.5 57 708-767 9-65 (116)
243 3oop_A LIN2960 protein; protei 20.1 57 0.002 28.6 2.9 46 715-768 40-85 (143)
244 2k4b_A Transcriptional regulat 20.0 32 0.0011 28.8 1.1 51 593-650 33-87 (99)
No 1
>1ldj_A Cullin homolog 1, CUL-1; cullin, ROC1, HRT1, zinc ring finger, ligase, ubiquitin, ubiquitination, SCF; 3.00A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 1u6g_A 1ldk_A 1ldk_B 3rtr_A
Probab=100.00 E-value=4.3e-135 Score=1204.87 Aligned_cols=726 Identities=32% Similarity=0.536 Sum_probs=656.0
Q ss_pred HHhhhhHHHHHHHHHHhcCCCChhHHHHHHHHHHhhcccC-------------------------CCChhHHHHHHHHHH
Q psy14208 10 FEDKWPSMRPIVLKLLQQEPVSQNEWQNLFYAVHVVCLWD-------------------------EKGPSKIVDALKEDI 64 (778)
Q Consensus 10 fe~~W~~L~~ai~~i~~~~~~~~~sy~~lY~~vY~lc~~~-------------------------~~~~~~LY~~l~~~i 64 (778)
||++|..|++||+.|+.+++++..+||+||+.||++|+++ +.+|++||+++++++
T Consensus 1 f~~~W~~L~~ai~~I~~~~~~s~~~~~~LY~~vYn~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~LY~~l~~~l 80 (760)
T 1ldj_A 1 LDQIWDDLRAGIQQVYTRQSMAKSRYMELYTHVYNYCTSVHQSNQARGAGVPPSKSKKGQTPGGAQFVGLELYKRLKEFL 80 (760)
T ss_dssp CHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHTCCC----------------------------TTHHHHHHHHHH
T ss_pred ChhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCcccCCCcccccccccccccccccCcchhHHHHHHHHHHHH
Confidence 6899999999999999876899999999999999999984 127899999999999
Q ss_pred HHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHhhcccCcccccchhhhhccccccccccCCccccccccchhHHHHHHH
Q psy14208 65 MNFIRHAQQRVLAHEEDQALLKAYIQEWSKFLAQCSYLPTPFRQLETSLVNKSVSTSLTNNNNKQKISAEESTVRVLMLD 144 (778)
Q Consensus 65 ~~~l~~~~~~l~~~~~~~~~L~~~~~~W~~y~~~~~~l~~vf~YLdr~yv~~~~~~~~~~~~~~~~~~~~~~~i~~l~l~ 144 (778)
++|+..++..+... .++.||..|..+|.+|+.++.||+++|+||||+||++.+. +|++ ++++|+++||.
T Consensus 81 ~~~l~~~~~~~~~~-~~e~lL~~~~~~W~~~~~~~~~i~~if~YLdR~yv~~~~~------~g~~----~~~~I~~lgL~ 149 (760)
T 1ldj_A 81 KNYLTNLLKDGEDL-MDESVLKFYTQQWEDYRFSSKVLNGICAYLNRHWVRRECD------EGRK----GIYEIYSLALV 149 (760)
T ss_dssp HHHHHHHHHTTCSC-TTTTHHHHHHHHHHHHHHHHHHHHHHTHHHHHHSSSCCC-----------------CCHHHHHHH
T ss_pred HHHHHHHHHHHhhc-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHccccc------ccCC----CcccHHHHHHH
Confidence 99999877655433 4678999999999999999999999999999999998521 1211 24789999999
Q ss_pred hhhhhHHHhhHHHHHHHHHHHHHHHhcCCcCChHhHHHHHHHHHhhcCCCCc------hhhhhHHhHHHHHHHHHHHHHH
Q psy14208 145 SWNQSIFNDIKQRLQDSAMKLVQSERNGEAFDSQLVIGVRESYVNLCSNPED------KLQIYREHFEKAYIAATESFYT 218 (778)
Q Consensus 145 ~f~~~v~~~~~~~l~~~ll~~I~~~R~g~~id~~~i~~v~~~~~~l~~~~~~------~~~~Y~~~FE~~~L~~t~~yY~ 218 (778)
+|+++||.++++++++++|++|.++|+|+.||+.+|+++++||++||.+..+ .+++|.+.||++||++|..||+
T Consensus 150 ~fr~~vf~~l~~~l~~~lL~lI~~eR~Ge~id~~lik~vi~ml~~Lg~~~~~~~~~~~~l~vY~~~FE~~fL~~t~~fY~ 229 (760)
T 1ldj_A 150 TWRDCLFRPLNKQVTNAVLKLIEKERNGETINTRLISGVVQSYVELGLNEDDAFAKGPTLTVYKESFESQFLADTERFYT 229 (760)
T ss_dssp TTHHHHTTTTTTHHHHHHHHHHTTTSCCTTCCTHHHHHHHHHHHHTSCCSSSSSCSSCCCHHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCcccccccccccchhhhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999865433 4789999999999999999999
Q ss_pred HHHHHHHHccChhHHHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHHHHHHHHHHHhhHHHhccchHHHHHHHHH
Q psy14208 219 VKAAEFLQNNGVESYMKYADAKLHEEELRACKYLESSSSVQLLTDCCVTVLVSSFKNTILAECPKMIKMNETLKLELMMK 298 (778)
Q Consensus 219 ~~s~~~l~~~~~~~Yl~~v~~~l~eE~~r~~~yL~~~~t~~kl~~~l~~~LI~~~~~~l~~~~~~ll~~~~~~~L~~ly~ 298 (778)
.+|++|++++++++||++|+.++++|.+||..||++ +|.++|.++|+++||.+|++.|+++|..||++++.++|++||+
T Consensus 230 ~es~~~l~~~~~~~Yl~~~e~~l~eE~~R~~~yL~~-~t~~~l~~~~~~~Li~~~~~~l~~~~~~ll~~~~~~dL~~my~ 308 (760)
T 1ldj_A 230 RESTEFLQQNPVTEYMKKAEARLLEEQRRVQVYLHE-STQDELARKCEQVLIEKHLEIFHTEFQNLLDADKNEDLGRMYN 308 (760)
T ss_dssp HHHHHHHHHSCTTSSHHHHHHHHHHHHHTTTTTTCS-SSSHHHHHHHHHHHSSSSSHHHHHHHHHHHHSCCTTHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHhcCH-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999999999999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred hhhhhcCCchHHHHHHHHHHHHHhHHHHHhhhhhhccCHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcc
Q psy14208 299 LLDRIKDGITPMLQDLEAHIVNAGLADMIASADIITQDSEKYVERLLELFNQFSKLVKDAFKDDPRFLTARDKAYKNVVN 378 (778)
Q Consensus 299 l~~~~~~~~~~l~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~V~~ll~l~~~~~~l~~~~F~~~~~~~~~l~~af~~~lN 378 (778)
||+|+++|++.|+..|++||.+.|.+++....+....+|..||+.|+++|++|+.++..||++|+.|..++++||+.|+|
T Consensus 309 L~~rv~~gl~~l~~~~~~~i~~~G~~~v~~~~~~~~~~~~~~V~~ll~l~~k~~~lv~~~F~~d~~f~~al~~af~~~iN 388 (760)
T 1ldj_A 309 LVSRIQDGLGELKKLLETHIHNQGLAAIEKCGEAALNDPKMYVQTVLDVHKKYNALVMSAFNNDAGFVAALDKACGRFIN 388 (760)
T ss_dssp HHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHTTSGGGCHHHHHHHHHHHHHHHHHHHHTTTTTCHHHHHHHHHHHHHHHH
T ss_pred HhCcCcchHHHHHHHHHHHHHHHHHHHHHHhhcccccCHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999887654444578999999999999999999999999999999999999999999
Q ss_pred ccccccccCCccccCCCCCCCCCchhHHHHHHhHHhhccCCCCCCCChHHHHHHHHhHHHhhhcccChhHHHHHHHHHHH
Q psy14208 379 DTTVFKLELPTKQCTGIKTLPESKCPELLANYCDMLLRKTPLSKRLTADEIESKLRNVLLVLKYVQNKDVFMRFHKAHLT 458 (778)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~La~y~D~~lk~~~~~~~~~~~e~e~~l~~i~~lf~~l~~Kd~F~~~Y~~~La 458 (778)
.+.+.... ++..++||+||+|||.+||++. ++.+++|++..|++++.||+|+++||+|+.+|+++||
T Consensus 389 ~~~~~~~~-----------~~~~~~~E~la~y~D~~Lkk~~--k~~~e~e~e~~L~~i~~lf~~i~~KDvF~~~Y~~~La 455 (760)
T 1ldj_A 389 NNAVTKMA-----------QSSSKSPELLARYCDSLLKKSS--KNPEEAELEDTLNQVMVVFKYIEDKDVFQKFYAKMLA 455 (760)
T ss_dssp SSHHHHHH-----------TSTTHHHHHHHHHHHHHHBCCS--SCCCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred CCcccccc-----------ccccccHHHHHHHhHHHHhCCC--CCCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 86432100 1236899999999999999974 5678999999999999999999999999999999999
Q ss_pred HHHcCCCCCChHHHHHHHHHHH-HcCCChhhHHHHHHHHHhHHHhHHHHHHHHHHhccCCCCCCCceEEEeccCCCCCCC
Q psy14208 459 RRLILDTSADSEKEENMVEWLR-DVGMPADYVNKLARMFQDIKVSQDLNYQFKQSYRGSKGSIGDSINIKILNAGAWARG 537 (778)
Q Consensus 459 kRLL~~~s~s~~~E~~~i~~Lk-~~G~~~~~t~kl~~Ml~D~~~S~~l~~~f~~~~~~~~~~~~~~~~v~VLt~~~WP~~ 537 (778)
+|||.++|.+.+.|+.||++|| +|| .+||+||++||+|+..|++++..|+++..+ +...+++|+|.|||+|+||..
T Consensus 456 kRLL~~~s~s~d~E~~~i~~Lk~~~G--~~~t~kle~M~~Di~~S~~l~~~f~~~~~~-~~~~~~~~~v~VLs~~~WP~~ 532 (760)
T 1ldj_A 456 KRLVHQNSASDDAEASMISKLKQACG--FEYTSKLQRMFQDIGVSKDLNEQFKKHLTN-SEPLDLDFSIQVLSSGSWPFQ 532 (760)
T ss_dssp HHHHTTCBSCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-TCCCSSEEEEEEEETTTSCCC
T ss_pred HHhcCCCCCChHHHHHHHHHHHHHhC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccCCCCCeeEEecCCCCCCCC
Confidence 9999999999999999999999 999 699999999999999999999999998764 122368999999999999998
Q ss_pred CCCccccCChHHHHHHHHHHHHHHhhCCCceeEeccCCceEEEEEEecCeeEEEEecHHHHHHHHhhcCCCCCcccHHHH
Q psy14208 538 SERVTVSLPLELEDYIPEVEDFYKKKHSGRKLQWYHHMSNGTITFSNEVGKYDLDVTTFQMAVLFAWNERPLDRLSFENL 617 (778)
Q Consensus 538 ~~~~~~~lP~~l~~~~~~f~~~Y~~k~~~R~L~w~~~l~~~~i~~~~~~~~~~l~~s~~Q~~ILl~FN~~~~~~~t~~ei 617 (778)
+..++.||++|+.+++.|++||..+|+||+|+|+|++|+|+|++.+++++|+|+||++||+||++||+ .+.+|+++|
T Consensus 533 -~~~~~~lP~~l~~~~~~F~~fY~~~~~~RkL~W~~~lg~~~l~~~~~~~~~~l~vs~~Qa~iLllFn~--~~~~t~~ei 609 (760)
T 1ldj_A 533 -QSCTFALPSELERSYQRFTAFYASRHSGRKLTWLYQLSKGELVTNCFKNRYTLQASTFQMAILLQYNT--EDAYTVQQL 609 (760)
T ss_dssp -CCSCCCCCGGGHHHHHHHHHHTTTTCTTCCEEECGGGCCCEEEESSSSSCCEEECCHHHHHHHHGGGS--SSEEEHHHH
T ss_pred -CCCCCcCCHHHHHHHHHHHHHHHHhCCCCeEEEecccccEEEEEEECCceEEEEEcHHHHHHHHHhcC--CCCcCHHHH
Confidence 46789999999999999999999999999999999999999999998899999999999999999999 489999999
Q ss_pred HHHcCCChHHHHHHHHHhhcccccccceeecccC--CCCCCCCCCCCeEEEccccccccccccccceeeeeccccccccc
Q psy14208 618 LLATELPDPELRRTLWSLVAFPKIKRQILLYSEE--VQSPKDFTEHTSFWINQEFALVKMGKILKRGKINLIGRLQLSTE 695 (778)
Q Consensus 618 ~~~t~i~~~~l~~~L~sL~~~~k~k~~iL~~~~~--~~~~~~~~~~~~f~lN~~F~~~~~~k~~~~~ki~~~~~~~~~~~ 695 (778)
++.|||++++|+++|.+|+. .| ||.+.|+ ...++++.+++.|++|.+|++ + ..|++|+.+ .+.++.
T Consensus 610 ~~~t~i~~~~l~r~L~~l~k---~~--iL~~~~~~~~~~~~~~~~~~~f~lN~~F~~----k-~~ri~i~~~--~~~e~~ 677 (760)
T 1ldj_A 610 TDSTQIKMDILAQVLQILLK---SK--LLVLEDENANVDEVELKPDTLIKLYLGYKN----K-KLRVNINVP--MKTEQK 677 (760)
T ss_dssp HHHTCCCHHHHHHHHHHHHH---TT--TEECSCTTCCTTTCCCCTTCEEEECSSCCC----S-SSSBCCCCC--CTTHHH
T ss_pred HHHHCcCHHHHHHHHHHHHH---CC--cceeCCCccccccCCCCCCCEEEeeccccC----C-ceEEEecCc--cccccc
Confidence 99999999999999999984 34 8986542 124577889999999999994 2 256676532 233444
Q ss_pred hhhhhhhHhHHHhhhhhhhhhhhhhhccCCCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHhhhhcccccCCCCCCceE
Q psy14208 696 KSKEEDNESIVQLRILRVQEAIIKILKMRKRISNAQLQTELVDILKNMFLPSKKMIKEQIEWLIEQKYMRRDDDDINVFV 775 (778)
Q Consensus 696 ~~~~~~~~~v~~~R~~~i~A~IVRiMK~~k~l~~~~L~~~v~~~l~~~F~p~~~~iK~~Ie~LIereyl~Rd~~d~~~y~ 775 (778)
.+.+.+.+.|.+||++.||||||||||+||+|+|++|+.+|+++++++|.|++.+||+|||+||+||||+||++|+++|+
T Consensus 678 ~e~~~~~~~v~~dR~~~i~AaIVRIMK~rK~l~h~~Lv~ev~~ql~~rF~p~~~~IKk~Ie~LIereYl~R~~~~~~~y~ 757 (760)
T 1ldj_A 678 QEQETTHKNIEEDRKLLIQAAIVRIMKMRKVLKHQQLLGEVLTQLSSRFKPRVPVIKKCIDILIEKEYLERVDGEKDTYS 757 (760)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSEEEHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEEECSSSTTEEE
T ss_pred hhhhhHHHHHHHHHHhHheeeehhhhhccCCCcHHHHHHHHHHHHhccCCCCHHHHHHHHHHHhhccceeeCCCCCccee
Confidence 45566788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecC
Q psy14208 776 YLA 778 (778)
Q Consensus 776 Yia 778 (778)
|+|
T Consensus 758 YlA 760 (760)
T 1ldj_A 758 YLA 760 (760)
T ss_dssp ECC
T ss_pred eCC
Confidence 998
No 2
>2hye_C Cullin-4A, CUL-4A; beta propeller, ring finger, zinc finger, propeller cluster, helical repeats, cullin repeats, protein binding; HET: DNA; 3.10A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 4a0k_A* 4a0c_C 4a0l_E*
Probab=100.00 E-value=1.4e-130 Score=1166.00 Aligned_cols=699 Identities=28% Similarity=0.458 Sum_probs=642.5
Q ss_pred CCcHHhhhhHHHHHHHHHHhcCCCChhHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHHHHHHHHHhhc-cchHHHH
Q psy14208 7 TQTFEDKWPSMRPIVLKLLQQEPVSQNEWQNLFYAVHVVCLWDEKGPSKIVDALKEDIMNFIRHAQQRVLAH-EEDQALL 85 (778)
Q Consensus 7 ~~~fe~~W~~L~~ai~~i~~~~~~~~~sy~~lY~~vY~lc~~~~~~~~~LY~~l~~~i~~~l~~~~~~l~~~-~~~~~~L 85 (778)
+.+||++|..|++||+.|+.++ .+..+||+||+.||+||++ ++|++||+++++.+++|+..+++.+.+. .+++.||
T Consensus 56 ~~~~e~~W~~L~~ai~~I~~~~-~~~~s~e~LY~~vy~lc~~--k~~~~LY~~l~~~~~~~l~~~~~~l~~~~~~~~~~L 132 (759)
T 2hye_C 56 DNYTQDTWRKLHEAVRAVQSST-SIRYNLEELYQAVENLCSH--KVSPMLYKQLRQACEDHVQAQILPFREDSLDSVLFL 132 (759)
T ss_dssp CCTTTTHHHHHHHHHHTTSTTC-CCSSCHHHHHHHHHHHCCT--TTHHHHHHHHHHHHHHHHHHHHHHHTSCCCCTTHHH
T ss_pred cchHHHHHHHHHHHHHHHHhCC-CCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHH
Confidence 3566999999999999999865 4567899999999999998 7899999999999999999988777542 2345899
Q ss_pred HHHHHHHHHHHHhhcccCcccccchhhhhccccccccccCCccccccccchhHHHHHHHhhhhhHHHh--hHHHHHHHHH
Q psy14208 86 KAYIQEWSKFLAQCSYLPTPFRQLETSLVNKSVSTSLTNNNNKQKISAEESTVRVLMLDSWNQSIFND--IKQRLQDSAM 163 (778)
Q Consensus 86 ~~~~~~W~~y~~~~~~l~~vf~YLdr~yv~~~~~~~~~~~~~~~~~~~~~~~i~~l~l~~f~~~v~~~--~~~~l~~~ll 163 (778)
..|..+|.+|+.++.+|+++|+||||+||.+++ +.++|+++|+.+|+++||.+ +++++++++|
T Consensus 133 ~~~~~~W~~~~~~~~~i~~if~YLDR~yv~~~~---------------~~~~I~~lgL~lfr~~v~~~~~i~~~l~~~lL 197 (759)
T 2hye_C 133 KKINTCWQDHCRQMIMIRSIFLFLDRTYVLQNS---------------TLPSIWDMGLELFRTHIISDKMVQSKTIDGIL 197 (759)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHTTTTTSCS---------------SSCCHHHHHHHHHHHTTTSSSTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcHHhhCCC---------------CCCcHHHHHHHHHHHHHhcCHhHHHHHHHHHH
Confidence 999999999999999999999999999999752 13789999999999999997 9999999999
Q ss_pred HHHHHHhcCCcCChHhHHHHHHHHHhhcCCCCchhhhhHHhHHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHH
Q psy14208 164 KLVQSERNGEAFDSQLVIGVRESYVNLCSNPEDKLQIYREHFEKAYIAATESFYTVKAAEFLQNNGVESYMKYADAKLHE 243 (778)
Q Consensus 164 ~~I~~~R~g~~id~~~i~~v~~~~~~l~~~~~~~~~~Y~~~FE~~~L~~t~~yY~~~s~~~l~~~~~~~Yl~~v~~~l~e 243 (778)
.+|.++|+|+.||+.+|+++++||+.|+ +|.+.||++||++|.+||+.+|++|+++.++++|+++|+.++++
T Consensus 198 ~lI~~eR~Ge~id~~llk~vi~ml~~L~--------vY~~~FE~~fL~~T~~fY~~e~~~~l~~~~~~~Yl~~~e~rl~e 269 (759)
T 2hye_C 198 LLIERERSGEAVDRSLLRSLLGMLSDLQ--------VYKDSFELKFLEETNCLYAAEGQRLMQEREVPEYLNHVSKRLEE 269 (759)
T ss_dssp HHHHTTTTTCCCCHHHHHHHHHHHHHTT--------CHHHHTHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCcHHHHHHHHHHhhhhh--------HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999998873 79999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcCCCccHHHHHHHHHHHHHHHHHHHHHH-hhHHHhccchHHHHHHHHHhhhhhcCCchHHHHHHHHHHHHHh
Q psy14208 244 EELRACKYLESSSSVQLLTDCCVTVLVSSFKNTILA-ECPKMIKMNETLKLELMMKLLDRIKDGITPMLQDLEAHIVNAG 322 (778)
Q Consensus 244 E~~r~~~yL~~~~t~~kl~~~l~~~LI~~~~~~l~~-~~~~ll~~~~~~~L~~ly~l~~~~~~~~~~l~~~~~~~i~~~g 322 (778)
|.+||..||++ +|.++|.++|+++||.+|++.|++ ++..||.+++.++|++||+|++++++|++.|+..|++||++.|
T Consensus 270 E~~r~~~yL~~-~t~~~l~~~~~~~Li~~~~~~ll~~~~~~lL~~~~~~dL~~mY~L~~rv~~~l~~l~~~~~~~I~~~g 348 (759)
T 2hye_C 270 EGDRVITYLDH-STQKPLIACVEKQLLGEHLTAILQKGLDHLLDENRVPDLAQMYQLFSRVRGGQQALLQHWSEYIKTFG 348 (759)
T ss_dssp THHHHTTTSCT-TTHHHHHHHHHHHHTTTCSHHHHHTTHHHHHTTTCHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCh-hhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhcCCHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHh
Confidence 99999999999 999999999999999999999998 8999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhhccCHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHhccccccccccCCccccCCCCCCCCCc
Q psy14208 323 LADMIASADIITQDSEKYVERLLELFNQFSKLVKDAFKDDPRFLTARDKAYKNVVNDTTVFKLELPTKQCTGIKTLPESK 402 (778)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~V~~ll~l~~~~~~l~~~~F~~~~~~~~~l~~af~~~lN~~~~~~~~~~~~~~~~~~~~~~~~ 402 (778)
.+++... ..+..||+.|+++|++|+.++.+||++|+.|..++++||+.|+|.+ ..+
T Consensus 349 ~~iv~~~-----~~~~~~V~~ll~~~~k~~~lv~~~F~~d~~f~~al~~af~~fiN~~-------------------~~~ 404 (759)
T 2hye_C 349 TAIVINP-----EKDKDMVQDLLDFKDKVDHVIEVCFQKNERFVNLMKESFETFINKR-------------------PNK 404 (759)
T ss_dssp HHHHSCG-----GGTTTHHHHHHHHHHHHHHHHHTTTTTCHHHHHHHHHHHHHHHTTS-------------------CSH
T ss_pred HHHhcCc-----ccHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHCCC-------------------CCc
Confidence 9876431 1245799999999999999999999999999999999999999964 257
Q ss_pred hhHHHHHHhHHhhccCCCCCCCChHHHHHHHHhHHHhhhcccChhHHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHH-H
Q psy14208 403 CPELLANYCDMLLRKTPLSKRLTADEIESKLRNVLLVLKYVQNKDVFMRFHKAHLTRRLILDTSADSEKEENMVEWLR-D 481 (778)
Q Consensus 403 ~~e~La~y~D~~lk~~~~~~~~~~~e~e~~l~~i~~lf~~l~~Kd~F~~~Y~~~LakRLL~~~s~s~~~E~~~i~~Lk-~ 481 (778)
+||+||+|||.+||+|. ++.+++|++..|++++.||+|+++||+|+.+|+++||+|||.+++.+.|.|+.||++|| +
T Consensus 405 ~~E~la~y~D~~Lk~~~--k~~~e~e~e~~L~~i~~lf~~i~~KDvF~~~Y~~~LakRLL~~~s~s~d~E~~~i~~Lk~~ 482 (759)
T 2hye_C 405 PAELIAKHVDSKLRAGN--KEATDEELERTLDKIMILFRFIHGKDVFEAFYKKDLAKRLLVGKSASVDAEKSMLSKLKHE 482 (759)
T ss_dssp HHHHHHHHHHHHHSSCG--GGCCSTTHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHhccCC--CCCCHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHH
Confidence 89999999999999974 56778999999999999999999999999999999999999999999999999999999 9
Q ss_pred cCCChhhHHHHHHHHHhHHHhHHHHHHHHHHhccCCCCCCCceEEEeccCCCCCCCCCCccccCChHHHHHHHHHHHHHH
Q psy14208 482 VGMPADYVNKLARMFQDIKVSQDLNYQFKQSYRGSKGSIGDSINIKILNAGAWARGSERVTVSLPLELEDYIPEVEDFYK 561 (778)
Q Consensus 482 ~G~~~~~t~kl~~Ml~D~~~S~~l~~~f~~~~~~~~~~~~~~~~v~VLt~~~WP~~~~~~~~~lP~~l~~~~~~f~~~Y~ 561 (778)
|| .+||+||++||+|+..|++++..|+++..+.+...+++|+|.|||+|+||.++ ..++.+|++|+.+++.|++||.
T Consensus 483 ~G--~~~t~kle~M~~Di~~S~~l~~~f~~~~~~~~~~~~~~~~v~VLs~~~WP~~~-~~~~~lP~~l~~~~~~F~~fY~ 559 (759)
T 2hye_C 483 CG--AAFTSKLEGMFKDMELSKDIMVHFKQHMQNQSDSGPIDLTVNILTMGYWPTYT-PMEVHLTPEMIKLQEVFKAFYL 559 (759)
T ss_dssp TC--TTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCEEEEEEEETTTSCCCC-CCCCCCCHHHHHHHHHHHHHHH
T ss_pred hC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCceEEEEeCCCCCCCCC-CCCCcCCHHHHHHHHHHHHHHH
Confidence 99 59999999999999999999999999875433334679999999999999984 5689999999999999999999
Q ss_pred hhCCCceeEeccCCceEEEEEEecCeeEEEEecHHHHHHHHhhcCCCCCcccHHHHHHHcCCChHHHHHHHHHhhccccc
Q psy14208 562 KKHSGRKLQWYHHMSNGTITFSNEVGKYDLDVTTFQMAVLFAWNERPLDRLSFENLLLATELPDPELRRTLWSLVAFPKI 641 (778)
Q Consensus 562 ~k~~~R~L~w~~~l~~~~i~~~~~~~~~~l~~s~~Q~~ILl~FN~~~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~~k~ 641 (778)
.+|+||+|+|+|++|+|+|+++|++|+|+|+||++||+|||+||+ .+.+|+++|++.|||++.+|+++|++|+. +|.
T Consensus 560 ~~~~gRkL~W~~~lg~~~l~~~~~~~~~~l~vs~~Qa~iLllFn~--~~~lt~~ei~~~t~i~~~~l~r~L~sL~~-~k~ 636 (759)
T 2hye_C 560 GKHSGRKLQWQTTLGHAVLKAEFKEGKKEFQVSLFQTLVLLMFNE--GDGFSFEEIKMATGIEDSELRRTLQSLAC-GKA 636 (759)
T ss_dssp TTSCSEECCBCGGGCEEEEECCCSSCCCEEEEEHHHHHHHHHTTS--CCCEEHHHHHHHTCCCHHHHHHHHHTTTT-TTT
T ss_pred hhCCCCEEEeccccCcEEEEEEeCCceEEEEEcHHHHHHHHHhcC--CCCcCHHHHHHHHCcCHHHHHHHHHHHHc-cCC
Confidence 999999999999999999999998899999999999999999999 58899999999999999999999999985 455
Q ss_pred ccceeecccCCCCCCCCCCCCeEEEccccccccccccccceeeeeccccccccchhhhhhhHhHHHhhhhhhhhhhhhhh
Q psy14208 642 KRQILLYSEEVQSPKDFTEHTSFWINQEFALVKMGKILKRGKINLIGRLQLSTEKSKEEDNESIVQLRILRVQEAIIKIL 721 (778)
Q Consensus 642 k~~iL~~~~~~~~~~~~~~~~~f~lN~~F~~~~~~k~~~~~ki~~~~~~~~~~~~~~~~~~~~v~~~R~~~i~A~IVRiM 721 (778)
+ ||.+.|+ ++++.+++.|+||.+|++ + .+|++|+.++. .++..+.+.+.+.|.+||++.|||||||||
T Consensus 637 ~--vL~~~p~---~~~v~~~d~f~lN~~f~~----~-~~riki~~i~~--~e~~~e~~~t~~~v~~dR~~~i~AaIVRIM 704 (759)
T 2hye_C 637 R--VLIKSPK---GKEVEDGDKFIFNGEFKH----K-LFRIKINQIQM--KETVEEQVSTTERVFQDRQYQIDAAIVRIM 704 (759)
T ss_dssp C--SEEETTC---SSSCCSSCEEEECCCCCC----S-CSSEECGGGGG--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred c--eeecCCC---CCCCCCCCEEEeeccccC----C-ceEEEeccccc--cccchhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 5 9998764 467788999999999994 2 36788875432 234455667888999999999999999999
Q ss_pred ccCCCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHhhhhcccccCCCCCCceEecC
Q psy14208 722 KMRKRISNAQLQTELVDILKNMFLPSKKMIKEQIEWLIEQKYMRRDDDDINVFVYLA 778 (778)
Q Consensus 722 K~~k~l~~~~L~~~v~~~l~~~F~p~~~~iK~~Ie~LIereyl~Rd~~d~~~y~Yia 778 (778)
|+||+|+|++|+.+|+++++ |+|++.+||+|||+||+||||+||++|+++|+|+|
T Consensus 705 K~rK~l~h~~Lv~ev~~ql~--F~p~~~~IKk~Ie~LIereYleR~~~~~~~y~YlA 759 (759)
T 2hye_C 705 KMRKTLGHNLLVSELYNQLK--FPVKPGDLKKRIESLIDRDYMERDKDNPNQYHYVA 759 (759)
T ss_dssp HHSSEEETHHHHHHHHHHSS--SCCCHHHHHHHHHHHHHTTSCBCCSSCTTEEECCC
T ss_pred hhcCCCCHHHHHHHHHHHcC--CCCCHHHHHHHHHHHhcccceecCCCCCCeeEecC
Confidence 99999999999999999997 99999999999999999999999999999999998
No 3
>3dpl_C Cullin-5; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} PDB: 3dqv_C
Probab=100.00 E-value=4.7e-86 Score=723.20 Aligned_cols=379 Identities=78% Similarity=1.181 Sum_probs=346.6
Q ss_pred CCchhHHHHHHhHHhhccCCCCCCCChHHHHHHHHhHHHhhhcccChhHHHHHHHHHHHHHHcCCCCCChHHHHHHHHHH
Q psy14208 400 ESKCPELLANYCDMLLRKTPLSKRLTADEIESKLRNVLLVLKYVQNKDVFMRFHKAHLTRRLILDTSADSEKEENMVEWL 479 (778)
Q Consensus 400 ~~~~~e~La~y~D~~lk~~~~~~~~~~~e~e~~l~~i~~lf~~l~~Kd~F~~~Y~~~LakRLL~~~s~s~~~E~~~i~~L 479 (778)
..++||+||+|||.+||++.++++.+++|++..|++++.||+|+++||+|+.+|+++||+|||.++|.+.|.|+.||++|
T Consensus 3 ~~~~~E~la~y~D~~lkk~~~~k~~~~~e~e~~L~~v~~lf~~l~~KDvF~~~Y~~~LakRLL~~~s~s~d~E~~~i~kL 82 (382)
T 3dpl_C 3 ESKCPEELANYCDMLLRKTPLSKKLTSEEIEAKLKEVLKKLKYVQNKDVFMRYHKAHLTRRLILDISADSEIEENMVEWL 82 (382)
T ss_dssp CCCSHHHHHHHHHHHHBSSHHHHTSCHHHHHHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHTTCBSCHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHH
Confidence 35799999999999999974335678999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCChhhHHHHHHHHHhHHHhHHHHHHHHHHhccCCC-CCCCceEEEeccCCCCCCCCCCccccCChHHHHHHHHHHH
Q psy14208 480 RDVGMPADYVNKLARMFQDIKVSQDLNYQFKQSYRGSKG-SIGDSINIKILNAGAWARGSERVTVSLPLELEDYIPEVED 558 (778)
Q Consensus 480 k~~G~~~~~t~kl~~Ml~D~~~S~~l~~~f~~~~~~~~~-~~~~~~~v~VLt~~~WP~~~~~~~~~lP~~l~~~~~~f~~ 558 (778)
|+||++++||+||++||+|+..|++++..|+++..+.+. ..+++|+|.|||+|+||..+++.++.+|++|+.+++.|++
T Consensus 83 K~cG~~~~ft~kle~M~kDi~~S~~l~~~f~~~~~~~~~~~~~~~~~v~VLs~~~WP~~~~~~~~~lP~~l~~~~~~F~~ 162 (382)
T 3dpl_C 83 REVGMPADYVNKLARMFQDIKVSEDLNQAFKEMHKNNKLALPADSVNIKILNAGAWSRSSEKVFVSLPTELEDLIPEVEE 162 (382)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC--CCCGGGEEEEEEEHHHHCCCSCCCCCCCCHHHHTTHHHHHH
T ss_pred HHcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCceEEEEccCCcCCCCCCCCCccCCHHHHHHHHHHHH
Confidence 999976799999999999999999999999998754321 1257899999999999997546799999999999999999
Q ss_pred HHHhhCCCceeEeccCCceEEEEEEecCeeEEEEecHHHHHHHHhhcCCCCCcccHHHHHHHcCCChHHHHHHHHHhhcc
Q psy14208 559 FYKKKHSGRKLQWYHHMSNGTITFSNEVGKYDLDVTTFQMAVLFAWNERPLDRLSFENLLLATELPDPELRRTLWSLVAF 638 (778)
Q Consensus 559 ~Y~~k~~~R~L~w~~~l~~~~i~~~~~~~~~~l~~s~~Q~~ILl~FN~~~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~ 638 (778)
||..+|+||+|+|+|++|+|+|++.+.+|+|+|+||++||+|||+||+.+++.+|+++|++.|||++.+|+++|+||+++
T Consensus 163 fY~~~~~gRkL~W~~~lg~~~l~~~~~~~~~~l~vs~~Qa~ILllFn~~~~~~lt~~ei~~~t~i~~~~L~r~L~sL~~~ 242 (382)
T 3dpl_C 163 FYKKNHSGRKLHWHHLMSNGIITFKNEVGQYDLEVTTFQLAVLFAWNQRPREKISFENLKLATELPDAELRRTLWSLVAF 242 (382)
T ss_dssp HHHTTSSSEEEEECGGGCEEEEEEECSSCEEEEEEEHHHHHHHGGGTTCTTCCEEHHHHHHHHCCCHHHHHHHHHHHHCC
T ss_pred HHHhcCCCCEEEEecCcccEEEEEEeCCceEEEEEcHHHHHHHHHhccCCCCcCcHHHHHHHHCcCHHHHHHHHHHHhcc
Confidence 99999999999999999999999999889999999999999999999853478999999999999999999999999987
Q ss_pred cccccceeecccCCCCCCCCCCCCeEEEccccccccccccccceeeeeccccccccchhhhhhhHhHHHhhhhhhhhhhh
Q psy14208 639 PKIKRQILLYSEEVQSPKDFTEHTSFWINQEFALVKMGKILKRGKINLIGRLQLSTEKSKEEDNESIVQLRILRVQEAII 718 (778)
Q Consensus 639 ~k~k~~iL~~~~~~~~~~~~~~~~~f~lN~~F~~~~~~k~~~~~ki~~~~~~~~~~~~~~~~~~~~v~~~R~~~i~A~IV 718 (778)
||.|.+||.+.|.+.+++++.++|.|+||.+|++.+|+|+.+|+||+++++.|.+++.+.+++.++|.+||++.||||||
T Consensus 243 ~k~k~~iL~~~~~~~~~~~~~~~d~f~~N~~F~~~k~~k~~~r~ki~~~~~~q~~~~~e~~~~~~~v~edR~~~i~AaIV 322 (382)
T 3dpl_C 243 PKLKRQVLLYEPQVNSPKDFTEGTLFSVNQEFSLIKNAKVQKRGKINLIGRLQLTTERMREEENEGIVQLRILRTQEAII 322 (382)
T ss_dssp TTCSSCSEEESSCCSSGGGCCTTCEEEECTTCCEESSSSEESEEEEECCTTTTSCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhcceeeecCCccccCcCCCCCEEEEcCCCcCCcccccceeEEEecccccccccchhhhhhHHHHHHHhhheeeEEEe
Confidence 77666699998876666788899999999999976666655789999887656566666678889999999999999999
Q ss_pred hhhccCCCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHhhhhcccccCCCCCCceEecC
Q psy14208 719 KILKMRKRISNAQLQTELVDILKNMFLPSKKMIKEQIEWLIEQKYMRRDDDDINVFVYLA 778 (778)
Q Consensus 719 RiMK~~k~l~~~~L~~~v~~~l~~~F~p~~~~iK~~Ie~LIereyl~Rd~~d~~~y~Yia 778 (778)
||||+||+|+|++|+.+|++|++++|.|++.+||+|||+|||||||+||++|+++|+|+|
T Consensus 323 RIMK~rK~l~h~~Lv~ev~~ql~~rF~p~~~~IKk~Ie~LIereYleR~~~d~~~y~YlA 382 (382)
T 3dpl_C 323 QIMKMRKKISNAQLQTELVEILKNMFLPQKKMIKEQIEWLIEHKYIRRDESDINTFIYMA 382 (382)
T ss_dssp HHHTTSSEECHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHHHTTSEEEETTEEEEEEECC
T ss_pred hhhhccCcccHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhhhhccCCCCCCeEEEcC
Confidence 999999999999999999999999999999999999999999999999999999999998
No 4
>2wzk_A Cullin-5, CUL-5; UBL conjugation pathway, HIV, phosphoprotein, isopeptide bond, protein binding; 2.05A {Mus musculus}
Probab=100.00 E-value=4.2e-67 Score=578.54 Aligned_cols=376 Identities=67% Similarity=1.078 Sum_probs=342.2
Q ss_pred CCCCCCCCcHHhhhhHHHHHHHHHHhcCCCChhHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHHHHHHHHHhhccc
Q psy14208 1 MLKDKGTQTFEDKWPSMRPIVLKLLQQEPVSQNEWQNLFYAVHVVCLWDEKGPSKIVDALKEDIMNFIRHAQQRVLAHEE 80 (778)
Q Consensus 1 ~~~~~~~~~fe~~W~~L~~ai~~i~~~~~~~~~sy~~lY~~vY~lc~~~~~~~~~LY~~l~~~i~~~l~~~~~~l~~~~~ 80 (778)
|+|++++.+|+++|..|++||.+|+.+++++..+||+||+.||++|++++++|++||+++++.+++|+..+...+....+
T Consensus 6 ~~~~~~~~~~e~~W~~L~~ai~~I~~~~~~~~~s~e~LY~~vy~lc~~~~~~~~~LY~~l~~~~~~~l~~~~~~~~~~~~ 85 (391)
T 2wzk_A 6 LLKNKGSLQFEDKWDFMHPIVLKLLRQESVTKQQWFDLFSDVHAVCLWDDKGSSKIHQALKEDILEFIKQAQARVLSHQD 85 (391)
T ss_dssp ------CCSHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHTCCS
T ss_pred ccCCCccccHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 57888899999999999999999999878999999999999999999866789999999999999999998877765545
Q ss_pred hHHHHHHHHHHHHHHHHhhcccCcccccchhhhhccccccccccCCccccccccchhHHHHHHHhhhhhHHHhhHHHHHH
Q psy14208 81 DQALLKAYIQEWSKFLAQCSYLPTPFRQLETSLVNKSVSTSLTNNNNKQKISAEESTVRVLMLDSWNQSIFNDIKQRLQD 160 (778)
Q Consensus 81 ~~~~L~~~~~~W~~y~~~~~~l~~vf~YLdr~yv~~~~~~~~~~~~~~~~~~~~~~~i~~l~l~~f~~~v~~~~~~~l~~ 160 (778)
++.||+.|..+|.+|+.++.+|+++|+||||+||.+.+. +..+..+.++|+++|+.+|+++||.++++++++
T Consensus 86 ~e~~L~~~~~~W~~~~~~~~~i~~if~YLdR~yv~~~~~--------~~~~~~~~~~I~~lgL~~fr~~v~~~i~~~l~~ 157 (391)
T 2wzk_A 86 DTALLKAYIVEWRKFFTQCDILPKPFCQLEVTLLGKQSS--------NKKSNMEDSIVRKLMLDTWNESIFSNIKNRLQD 157 (391)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTTGGGHHHHTTSTTC----------------CTTCHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--------ccccCCCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999999999999999999999976421 001001237999999999999999999999999
Q ss_pred HHHHHHHHHhcCCcCChHhHHHHHHHHHhhcCCCCchhhhhHHhHHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHH
Q psy14208 161 SAMKLVQSERNGEAFDSQLVIGVRESYVNLCSNPEDKLQIYREHFEKAYIAATESFYTVKAAEFLQNNGVESYMKYADAK 240 (778)
Q Consensus 161 ~ll~~I~~~R~g~~id~~~i~~v~~~~~~l~~~~~~~~~~Y~~~FE~~~L~~t~~yY~~~s~~~l~~~~~~~Yl~~v~~~ 240 (778)
+++.+|.++|+|+.||+++|+++++||+.||.+.++++++|.+.||++||++|.+||+.+|++|+++.++++||++|+.+
T Consensus 158 ~ll~lI~~eR~Ge~id~~llk~vi~~l~~L~~~~~~~l~vY~~~FE~~fL~~T~~fY~~es~~~l~~~~~~~Yl~~ve~r 237 (391)
T 2wzk_A 158 SAMKLVHAERLGEAFDSQLVIGVRESYVNLCSNPEDKLQIYRDNFEKAYLDSTERFYRTQAPSYLQQNGVQNYMKYADAK 237 (391)
T ss_dssp HHHHHHHHHHTTCCCCTHHHHHHHHHHHHSCCCSSCTTHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHccCccccHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 99999999999999999999999999999997766779999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhcC----CCccHHHHHHHHHHHHHHHHHHHHHHhhHHHhccchHHHHHHHHHhhhhhcCCchHHHHHHHH
Q psy14208 241 LHEEELRACKYLE----SSSSVQLLTDCCVTVLVSSFKNTILAECPKMIKMNETLKLELMMKLLDRIKDGITPMLQDLEA 316 (778)
Q Consensus 241 l~eE~~r~~~yL~----~~~t~~kl~~~l~~~LI~~~~~~l~~~~~~ll~~~~~~~L~~ly~l~~~~~~~~~~l~~~~~~ 316 (778)
|++|.+||..||+ + +|.++|.++|+++||.+|++.|++++..||++++.+||++||+|++|+++|+++|+..|++
T Consensus 238 L~eE~~R~~~yL~~~~~~-sT~~kl~~~~e~~LI~~h~~~ll~~~~~lL~~~~~~dL~~mY~L~~rv~~gl~~l~~~~~~ 316 (391)
T 2wzk_A 238 LKEEEKRALRYLETRREC-NSVEALMECCVNALVTSFKETILAECQGMIKRNETEKLHLMFSLMDKVPNGIEPMLKDLEE 316 (391)
T ss_dssp HHHHHHHHHHHSCCTTCC-SHHHHHHHHHHHHHTGGGHHHHHTTHHHHHHTTCHHHHHHHHHHHTTSTTCSHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcCCc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHccCcccHHHHHHHHHH
Confidence 9999999999999 8 8999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhHHHHHhhhhhhccCHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHhccccccccc
Q psy14208 317 HIVNAGLADMIASADIITQDSEKYVERLLELFNQFSKLVKDAFKDDPRFLTARDKAYKNVVNDTTVFKL 385 (778)
Q Consensus 317 ~i~~~g~~~~~~~~~~~~~~~~~~V~~ll~l~~~~~~l~~~~F~~~~~~~~~l~~af~~~lN~~~~~~~ 385 (778)
||++.|.+++....+.+..+|..||+.|+++|++|+.++..||.+|+.|.+++++||+.|+|.+.+|..
T Consensus 317 ~I~~~G~~~v~~~~~~~~~~~~~~V~~LL~l~~k~~~lv~~~F~~d~~f~~al~~af~~fiN~~~~~~~ 385 (391)
T 2wzk_A 317 HIISAGLADMVAAAETITTDSEKYREQLDTLFNRFSKLVKEAFQDDPRFLTARDKAYKAVVNDATIFKA 385 (391)
T ss_dssp HHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCchhhch
Confidence 999999998766555556789999999999999999999999999999999999999999999877653
No 5
>4ap2_B Cullin-3, CUL-3; ubiquitination, E3 ligase, cell cycle; HET: EDO; 2.80A {Homo sapiens}
Probab=100.00 E-value=4.8e-65 Score=563.96 Aligned_cols=361 Identities=19% Similarity=0.344 Sum_probs=321.5
Q ss_pred CcHHhhhhHHHHHHHHHHhcCCCChhHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHHH-HHHHHHhhccchHHHHH
Q psy14208 8 QTFEDKWPSMRPIVLKLLQQEPVSQNEWQNLFYAVHVVCLWDEKGPSKIVDALKEDIMNFIR-HAQQRVLAHEEDQALLK 86 (778)
Q Consensus 8 ~~fe~~W~~L~~ai~~i~~~~~~~~~sy~~lY~~vY~lc~~~~~~~~~LY~~l~~~i~~~l~-~~~~~l~~~~~~~~~L~ 86 (778)
.+|+++|..|++||..|+.+. .++.+||+||+.||++|++ ++|++||+++++.+++|+. .+.+.+.+. .++.||+
T Consensus 28 ~~~~~~W~~L~~ai~~I~~~~-~~~~s~eeLY~~vy~lc~~--k~g~~LY~~l~~~~~~~l~~~v~~~l~~~-~~~~~L~ 103 (410)
T 4ap2_B 28 KYVNSIWDLLKNAIQEIQRKN-NSGLSFEELYRNAYTMVLH--KHGEKLYTGLREVVTEHLINKVREDVLNS-LNNNFLQ 103 (410)
T ss_dssp HHHHHHHHHHHHHHHHHHTTC-CTTCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHTHHHHHHTT-TTSSHHH
T ss_pred hHHHHHHHHHHHHHHHHHhcC-CCCCCHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcHHHHH
Confidence 579999999999999999764 5679999999999999997 8999999999999999998 677777664 3457999
Q ss_pred HHHHHHHHHHHhhcccCcccccchhhhhccccccccccCCccccccccchhHHHHHHHhhhhhHHH--hhHHHHHHHHHH
Q psy14208 87 AYIQEWSKFLAQCSYLPTPFRQLETSLVNKSVSTSLTNNNNKQKISAEESTVRVLMLDSWNQSIFN--DIKQRLQDSAMK 164 (778)
Q Consensus 87 ~~~~~W~~y~~~~~~l~~vf~YLdr~yv~~~~~~~~~~~~~~~~~~~~~~~i~~l~l~~f~~~v~~--~~~~~l~~~ll~ 164 (778)
.|..+|.+|+.++.+|+++|+||||+||.+++ .++|+++|+.+|++.||. +++++++++++.
T Consensus 104 ~~~~~W~~~~~~~~~i~~if~YLDR~yv~~~~----------------~~~I~~lgL~lfr~~v~~~~~i~~~l~~~lL~ 167 (410)
T 4ap2_B 104 TLNQAWNDHQTAMVMIRDILMYMDRVYVQQNN----------------VENVYNLGLIIFRDQVVRYGCIRDHLRQTLLD 167 (410)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHTHHHHTT----------------CCCHHHHHHHHHHHHTTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHhhHHHHhcCC----------------CCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 99999999999999999999999999998752 278999999999999997 699999999999
Q ss_pred HHHHHhcCCcCChHhHHHHHHHHHhhcCCCCchhhhhHHhHHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHH
Q psy14208 165 LVQSERNGEAFDSQLVIGVRESYVNLCSNPEDKLQIYREHFEKAYIAATESFYTVKAAEFLQNNGVESYMKYADAKLHEE 244 (778)
Q Consensus 165 ~I~~~R~g~~id~~~i~~v~~~~~~l~~~~~~~~~~Y~~~FE~~~L~~t~~yY~~~s~~~l~~~~~~~Yl~~v~~~l~eE 244 (778)
+|.++|+|+.||+.+|+++++||++||.+ ++.+|.+.||++||++|.+||+.+|++|+++.++++||++|+.+|++|
T Consensus 168 lI~~eR~Ge~id~~lik~vi~ml~~Lg~~---~~~vY~~~FE~~fL~~T~~fY~~es~~~l~~~~~~~Yl~~ve~rL~eE 244 (410)
T 4ap2_B 168 MIARERKGEVVDRGAIRNACQMLMILGLE---GRSVYEEDFEAPFLEMSAEFFQMESQKFLAENSASVYIKKVEARINEE 244 (410)
T ss_dssp HHHHHHTTCCCCHHHHHHHHHHHHHTTSS---SSHHHHHHTHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCCCHHHHHHHHHHHHHcCCc---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999853 367999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhcCCCccHHHHHHHHHHHHHHHHHHHHHH----hhHHHhccchHHHHHHHHHhhhhhcCCchHHHHHHHHHHHH
Q psy14208 245 ELRACKYLESSSSVQLLTDCCVTVLVSSFKNTILA----ECPKMIKMNETLKLELMMKLLDRIKDGITPMLQDLEAHIVN 320 (778)
Q Consensus 245 ~~r~~~yL~~~~t~~kl~~~l~~~LI~~~~~~l~~----~~~~ll~~~~~~~L~~ly~l~~~~~~~~~~l~~~~~~~i~~ 320 (778)
.+||..||++ +|.++|.++|+++||.+|++.|++ +|..||++++.++|++||+|++|+++|+++|+..|++||++
T Consensus 245 ~~R~~~yL~~-sT~~kL~~~~e~~LI~~h~~~ll~~e~~g~~~lL~~~~~~dL~~mY~L~~rv~~gl~~L~~~~~~~I~~ 323 (410)
T 4ap2_B 245 IERVMHCLDK-STEEPIVKVVERELISKHMKTIVEMENSGLVHMLKNGKTEDLGCMYKLFSRVPNGLKTMCECMSSYLRE 323 (410)
T ss_dssp HHHHHHTSCG-GGHHHHHHHHHHHHTGGGHHHHHTCTTTSHHHHHHTTCHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCh-hhHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhCCCHHHHHHHHHHHhhccccHHHHHHHHHHHHHH
Confidence 9999999999 999999999999999999999985 79999999999999999999999999999999999999999
Q ss_pred HhHHHHHhhhhhhccCHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHhccccccccccCCccccCCCCCCCC
Q psy14208 321 AGLADMIASADIITQDSEKYVERLLELFNQFSKLVKDAFKDDPRFLTARDKAYKNVVNDTTVFKLELPTKQCTGIKTLPE 400 (778)
Q Consensus 321 ~g~~~~~~~~~~~~~~~~~~V~~ll~l~~~~~~l~~~~F~~~~~~~~~l~~af~~~lN~~~~~~~~~~~~~~~~~~~~~~ 400 (778)
.|.+++....+ ..+|..||+.||++|++|+.++..||.+|+.|..++++||+.|+|.+
T Consensus 324 ~G~~iv~~~~~--~~~~~~~V~~LL~l~~k~~~iv~~~F~~d~~f~~al~~AF~~fiN~~-------------------- 381 (410)
T 4ap2_B 324 QGKALVSEEGE--GKNPVDYRQGLDDLKSRFDRFLLESFNNDRLFKQTIAGDFEYFLNLN-------------------- 381 (410)
T ss_dssp HHHHHHHC--------CHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHC--------------------
T ss_pred HHHHHHhcccc--ccChHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC--------------------
Confidence 99998765432 35688999999999999999999999999999999999999999974
Q ss_pred CchhHHHHHHhHHh
Q psy14208 401 SKCPELLANYCDML 414 (778)
Q Consensus 401 ~~~~e~La~y~D~~ 414 (778)
.+.||+||+|||..
T Consensus 382 ~~spElla~y~D~~ 395 (410)
T 4ap2_B 382 SRSPEYLAENLYFQ 395 (410)
T ss_dssp --------------
T ss_pred CCCHHHHHHHccCc
Confidence 36789999999964
No 6
>4eoz_B Cullin-3, CUL-3; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} PDB: 4apf_B
Probab=100.00 E-value=8.7e-63 Score=539.39 Aligned_cols=348 Identities=19% Similarity=0.340 Sum_probs=274.7
Q ss_pred CCcHHhhhhHHHHHHHHHHhcCCCChhHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHHH-HHHHHHhhccchHHHH
Q psy14208 7 TQTFEDKWPSMRPIVLKLLQQEPVSQNEWQNLFYAVHVVCLWDEKGPSKIVDALKEDIMNFIR-HAQQRVLAHEEDQALL 85 (778)
Q Consensus 7 ~~~fe~~W~~L~~ai~~i~~~~~~~~~sy~~lY~~vY~lc~~~~~~~~~LY~~l~~~i~~~l~-~~~~~l~~~~~~~~~L 85 (778)
+.+|+++|..|++||..|+.+. .++.+||+||+.||++|++ ++|++||+++++.+++|+. .+.+.+.+. .++.||
T Consensus 10 ~~~~~~~W~~L~~ai~~I~~~~-~~~~s~e~LY~~vy~lc~~--k~g~~LY~~l~~~~~~~l~~~v~~~~~~~-~~~~~L 85 (364)
T 4eoz_B 10 EKYVNSIWDLLKNAIQEIQRKN-NSGLSFEELYRNAYTMVLH--KHGEKLYTGLREVVTEHLINKVREDVLNS-LNNNFL 85 (364)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTC-GGGCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHTHHHHHHTT-TTSSHH
T ss_pred hhhHHHHHHHHHHHHHHHHhcC-CCCCCHHHHHHHHHHHHhh--hCHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcHHHH
Confidence 3689999999999999999764 5679999999999999997 8999999999999999998 677777654 345799
Q ss_pred HHHHHHHHHHHHhhcccCcccccchhhhhccccccccccCCccccccccchhHHHHHHHhhhhhHHH--hhHHHHHHHHH
Q psy14208 86 KAYIQEWSKFLAQCSYLPTPFRQLETSLVNKSVSTSLTNNNNKQKISAEESTVRVLMLDSWNQSIFN--DIKQRLQDSAM 163 (778)
Q Consensus 86 ~~~~~~W~~y~~~~~~l~~vf~YLdr~yv~~~~~~~~~~~~~~~~~~~~~~~i~~l~l~~f~~~v~~--~~~~~l~~~ll 163 (778)
+.|..+|.+|+.++.+|+++|+||||+||.+++ .++|+++|+.+|+++||. +++++++++++
T Consensus 86 ~~~~~~W~~~~~~~~~i~~if~YLdR~yv~~~~----------------~~~I~~lgl~~fr~~v~~~~~i~~~l~~~ll 149 (364)
T 4eoz_B 86 QTLNQAWNDHQTAMVMIRDILMYMDRVYVQQNN----------------VENVYNLGLIIFRDQVVRYGCIRDHLRQTLL 149 (364)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHHTTGGGT----------------CCCHHHHHHHHHHHHTTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHhcCC----------------CCCHHHHHHHHHHHHHhcCchHHHHHHHHHH
Confidence 999999999999999999999999999999752 278999999999999996 79999999999
Q ss_pred HHHHHHhcCCcCChHhHHHHHHHHHhhcCCCCchhhhhHHhHHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHH
Q psy14208 164 KLVQSERNGEAFDSQLVIGVRESYVNLCSNPEDKLQIYREHFEKAYIAATESFYTVKAAEFLQNNGVESYMKYADAKLHE 243 (778)
Q Consensus 164 ~~I~~~R~g~~id~~~i~~v~~~~~~l~~~~~~~~~~Y~~~FE~~~L~~t~~yY~~~s~~~l~~~~~~~Yl~~v~~~l~e 243 (778)
.+|.++|+|+.||+.+|+++++||++||.+ ++.+|.+.||++||++|.+||+.+|++|+++.++++||++|+.++++
T Consensus 150 ~lI~~eR~Ge~id~~lik~~i~ml~~L~~~---~~~~Y~~~FE~~fL~~t~~fY~~es~~~l~~~~~~~Yl~~ve~rl~e 226 (364)
T 4eoz_B 150 DMIARERKGEVVDRGAIRNACQMLMILGLE---GRSVYEEDFEAPFLEMSAEFFQMESQKFLAENSASVYIKKVEARINE 226 (364)
T ss_dssp HHHHHHHTTCCCCHHHHHHHHHHHHHTTSS---SSHHHHHHTHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCc---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999853 36799999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcCCCccHHHHHHHHHHHHHHHHHHHHHH----hhHHHhccchHHHHHHHHHhhhhhcCCchHHHHHHHHHHH
Q psy14208 244 EELRACKYLESSSSVQLLTDCCVTVLVSSFKNTILA----ECPKMIKMNETLKLELMMKLLDRIKDGITPMLQDLEAHIV 319 (778)
Q Consensus 244 E~~r~~~yL~~~~t~~kl~~~l~~~LI~~~~~~l~~----~~~~ll~~~~~~~L~~ly~l~~~~~~~~~~l~~~~~~~i~ 319 (778)
|.+||..||++ +|.++|.++|+++||.+|++.|++ ++..||++++.++|++||+|++|+++|+++|+..|++||+
T Consensus 227 E~~R~~~yL~~-~T~~~l~~~~e~~LI~~h~~~ll~~e~~g~~~lL~~~~~~dL~~mY~L~~rv~~gl~~l~~~~~~~I~ 305 (364)
T 4eoz_B 227 EIERVMHCLDK-STEEPIVKVVERELISKHMKTIVEMENSGLVHMLKNGKTEDLGCMYKLFSRVPNGLKTMCECMSSYLR 305 (364)
T ss_dssp HHHHHHHHSCG-GGHHHHHHHHHHHHTTTTHHHHHTCTTTSHHHHTTTTCHHHHHHHHHHHTTSTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCc-ccHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHhCCCHHHHHHHHHHHhhccccHHHHHHHHHHHHH
Confidence 99999999999 999999999999999999999985 7999999999999999999999999999999999999999
Q ss_pred HHhHHHHHhhhhhhccCHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccc
Q psy14208 320 NAGLADMIASADIITQDSEKYVERLLELFNQFSKLVKDAFKDDPRFLTARDKAYKNVVNDT 380 (778)
Q Consensus 320 ~~g~~~~~~~~~~~~~~~~~~V~~ll~l~~~~~~l~~~~F~~~~~~~~~l~~af~~~lN~~ 380 (778)
+.|.+++....+ ..+|..||+.|+++|++|+.++.+||.+|+.|..++++||+.|+|.+
T Consensus 306 ~~G~~iv~~~~~--~~~~~~~V~~LL~l~~k~~~iv~~~F~~d~~f~~al~~af~~fiN~n 364 (364)
T 4eoz_B 306 EQGKALVSEEGE--GKNPVDYRQGLDDLKSRFDRFLLESFNNDRLFKQTIAGDFEYFLNLN 364 (364)
T ss_dssp HTC----------------------------------------------------------
T ss_pred HHHHHHHhCccc--cCChHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcCc
Confidence 999988765432 35788999999999999999999999999999999999999999963
No 7
>4a64_A Cullin-4B, CUL4B, CUL-4B; cell cycle; 2.57A {Homo sapiens}
Probab=100.00 E-value=2.8e-61 Score=525.51 Aligned_cols=343 Identities=19% Similarity=0.364 Sum_probs=314.0
Q ss_pred CCCcHHhhhhHHHHHHHHHHhcCCCChhHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHHHHHHHHHHhhc-cchHHH
Q psy14208 6 GTQTFEDKWPSMRPIVLKLLQQEPVSQNEWQNLFYAVHVVCLWDEKGPSKIVDALKEDIMNFIRHAQQRVLAH-EEDQAL 84 (778)
Q Consensus 6 ~~~~fe~~W~~L~~ai~~i~~~~~~~~~sy~~lY~~vY~lc~~~~~~~~~LY~~l~~~i~~~l~~~~~~l~~~-~~~~~~ 84 (778)
++.+|+++|..|++||..|+++. .++.+||+||+.||++|++ ++|++||+++++.+++|+...+..+.+. .+++.|
T Consensus 6 ~~~~~~~~W~~L~~ai~~I~~~~-~~~~s~eeLY~~vy~lc~~--~~g~~LY~~l~~~~~~~l~~~~~~~~~~~~~~~~~ 82 (354)
T 4a64_A 6 PENYTDETWQKLKEAVEAIQNST-SIKYNLEELYQAVENLCSY--KISANLYKQLRQICEDHIKAQIHQFREDSLDSVLF 82 (354)
T ss_dssp CSSSTTHHHHHHHHHHHHHHTTC-CCCSCHHHHHHHHHHHHHH--SCHHHHHHHHHHHHHHHHHHTTGGGGCCSCCHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHhCC-CCCCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHH
Confidence 34699999999999999999765 4668999999999999998 8999999999999999998765444432 235689
Q ss_pred HHHHHHHHHHHHHhhcccCcccccchhhhhccccccccccCCccccccccchhHHHHHHHhhhhhHHH--hhHHHHHHHH
Q psy14208 85 LKAYIQEWSKFLAQCSYLPTPFRQLETSLVNKSVSTSLTNNNNKQKISAEESTVRVLMLDSWNQSIFN--DIKQRLQDSA 162 (778)
Q Consensus 85 L~~~~~~W~~y~~~~~~l~~vf~YLdr~yv~~~~~~~~~~~~~~~~~~~~~~~i~~l~l~~f~~~v~~--~~~~~l~~~l 162 (778)
|+.|..+|.+|+.++.+|+++|+||||+||.+++ +.++|+++|+.+|+++||. ++++++++++
T Consensus 83 L~~~~~~W~~~~~~~~~i~~if~YLdR~yv~~~~---------------~~~~I~~lgL~lfr~~v~~~~~i~~~l~~~l 147 (354)
T 4a64_A 83 LKKIDRCWQNHCRQMIMIRSIFLFLDRTYVLQNS---------------MLPSIWDMGLELFRAHIISDQKVQNKTIDGI 147 (354)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHHHHCSTTTSC---------------CSCCHHHHHHHHHHHHTTTSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHhcCC---------------CCCCHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 9999999999999999999999999999999752 1278999999999999997 6999999999
Q ss_pred HHHHHHHhcCCcCChHhHHHHHHHHHhhcCCCCchhhhhHHhHHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHH
Q psy14208 163 MKLVQSERNGEAFDSQLVIGVRESYVNLCSNPEDKLQIYREHFEKAYIAATESFYTVKAAEFLQNNGVESYMKYADAKLH 242 (778)
Q Consensus 163 l~~I~~~R~g~~id~~~i~~v~~~~~~l~~~~~~~~~~Y~~~FE~~~L~~t~~yY~~~s~~~l~~~~~~~Yl~~v~~~l~ 242 (778)
+.+|+++|+|+.||+.+|+++++|++.| .+|.+.||++||++|.+||+.+|++|+++.++++||++|+.+++
T Consensus 148 l~lI~~eR~Ge~id~~lik~~i~ml~~L--------~vY~~~FE~~fL~~t~~fY~~e~~~~l~~~~~~~Yl~~ve~rl~ 219 (354)
T 4a64_A 148 LLLIERERNGEAIDRSLLRSLLSMLSDL--------QIYQDSFEQRFLEETNRLYAAEGQKLMQEREVPEYLHHVNKRLE 219 (354)
T ss_dssp HHHHHHHHTTCCCCHHHHHHHHHHHHHT--------TCHHHHTHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhhh--------hhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999876 48999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCCCccHHHHHHHHHHHHHHHHHHHHH-HhhHHHhccchHHHHHHHHHhhhhhcCCchHHHHHHHHHHHHH
Q psy14208 243 EEELRACKYLESSSSVQLLTDCCVTVLVSSFKNTIL-AECPKMIKMNETLKLELMMKLLDRIKDGITPMLQDLEAHIVNA 321 (778)
Q Consensus 243 eE~~r~~~yL~~~~t~~kl~~~l~~~LI~~~~~~l~-~~~~~ll~~~~~~~L~~ly~l~~~~~~~~~~l~~~~~~~i~~~ 321 (778)
+|.+||..||++ +|.++|.++|+++||.+|++.|+ +++..||++++.++|++||+|++|+++|+++|+..|++||++.
T Consensus 220 eE~~R~~~yL~~-~T~~~l~~~~e~~LI~~h~~~ll~~~~~~lL~~~~~~dL~~mY~L~~rv~~gl~~l~~~~~~~I~~~ 298 (354)
T 4a64_A 220 EEADRLITYLDQ-TTQKSLIATVEKQLLGEHLTAILQKGLNNLLDENRIQDLSLLYQLFSRVRGGVQVLLQQWIEYIKAF 298 (354)
T ss_dssp HHHHHHHHTSCG-GGHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHccccccHHHHHHHHHHHHHHH
Confidence 999999999999 99999999999999999999887 4799999999999999999999999999999999999999999
Q ss_pred hHHHHHhhhhhhccCHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccc
Q psy14208 322 GLADMIASADIITQDSEKYVERLLELFNQFSKLVKDAFKDDPRFLTARDKAYKNVVNDT 380 (778)
Q Consensus 322 g~~~~~~~~~~~~~~~~~~V~~ll~l~~~~~~l~~~~F~~~~~~~~~l~~af~~~lN~~ 380 (778)
|.+++... .++..||+.|+++|++|+.++.+||.+|+.|.+++++||+.|+|.+
T Consensus 299 G~~iv~~~-----~~~~~~V~~LL~l~~k~~~iv~~~F~~d~~f~~al~~af~~fiN~~ 352 (354)
T 4a64_A 299 GSTIVINP-----EKDKTMRQELDDFKDKVDHIIDICFLKNEKFINAMKEAFETFINKR 352 (354)
T ss_dssp HHHHHHSC-----CSSSCHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTC----
T ss_pred HHHHHcCc-----cchHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCC
Confidence 99877532 3567899999999999999999999999999999999999999975
No 8
>3o2p_E Cell division control protein 53; ligase, cell cycle; 2.23A {Saccharomyces cerevisiae} PDB: 3o6b_B
Probab=99.93 E-value=5.9e-27 Score=196.27 Aligned_cols=81 Identities=25% Similarity=0.468 Sum_probs=78.2
Q ss_pred hhhhhhHhHHHhhhhhhhhhhhhhhccCCCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHhhhhcccccCCCCCCceEe
Q psy14208 697 SKEEDNESIVQLRILRVQEAIIKILKMRKRISNAQLQTELVDILKNMFLPSKKMIKEQIEWLIEQKYMRRDDDDINVFVY 776 (778)
Q Consensus 697 ~~~~~~~~v~~~R~~~i~A~IVRiMK~~k~l~~~~L~~~v~~~l~~~F~p~~~~iK~~Ie~LIereyl~Rd~~d~~~y~Y 776 (778)
+.+.+.+.+.+||++.||||||||||+||+|+|++|+.+|+++++++|+|++.+||+|||.||+||||+|+++| ++|+|
T Consensus 8 e~~~t~~~v~~dR~~~iqAaIVRIMK~rK~l~h~~Lv~ev~~ql~~rF~p~~~~IKk~IE~LIekeYleR~~~~-~~y~Y 86 (88)
T 3o2p_E 8 EDERIEKELNTERQIFLEACIVRIMKAKRNLPHTTLVNECIAQSHQRFNAKVSMVKRAIDSLIQKGYLQRGDDG-ESYAY 86 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSEEEHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEEECTTS-SEEEE
T ss_pred hHHHHHHHHHHHhhhhhheeeehhhcccccccHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhhhHHhcCCCC-CeEEe
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999998 99999
Q ss_pred cC
Q psy14208 777 LA 778 (778)
Q Consensus 777 ia 778 (778)
+|
T Consensus 87 lA 88 (88)
T 3o2p_E 87 LA 88 (88)
T ss_dssp CC
T ss_pred eC
Confidence 98
No 9
>3tdu_C Cullin-1, CUL-1; E2:E3, ligase-protein binding complex; 1.50A {Homo sapiens} PDB: 3tdz_C
Probab=99.93 E-value=2.8e-27 Score=193.63 Aligned_cols=76 Identities=38% Similarity=0.595 Sum_probs=73.6
Q ss_pred HhHHHhhhhhhhhhhhhhhccCCCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHhhhhcccccCCCCCCceEecC
Q psy14208 703 ESIVQLRILRVQEAIIKILKMRKRISNAQLQTELVDILKNMFLPSKKMIKEQIEWLIEQKYMRRDDDDINVFVYLA 778 (778)
Q Consensus 703 ~~v~~~R~~~i~A~IVRiMK~~k~l~~~~L~~~v~~~l~~~F~p~~~~iK~~Ie~LIereyl~Rd~~d~~~y~Yia 778 (778)
+.+.+||++.|+||||||||+||+|+|++|+.+|+++++++|+|++.+||+|||+|||||||+||++|+++|+|+|
T Consensus 2 k~v~~dR~~~i~AaIVRIMK~rK~l~h~~Lv~ev~~ql~~rF~p~~~~IKk~IE~LIereYl~R~~~~~~~y~Y~A 77 (77)
T 3tdu_C 2 SNIEEDRKLLIQAAIVRIMKMRKVLKHQQLLGEVLTQLSSRFKPRVPVIKKCIDILIEKEYLERVDGEKDTYSYLA 77 (77)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHSEEEHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEEEETTEEEEEEECC
T ss_pred cchhhhhhheEeeEEeeeecccceeeHHHHHHHHHHHHhCcCCCCHHHHHHHHHHHHhhhHhhcCCCCCceEEEeC
Confidence 3578999999999999999999999999999999999999999999999999999999999999999999999998
No 10
>1iuy_A Cullin-3 homologue; winged helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.34
Probab=99.93 E-value=2.2e-27 Score=201.20 Aligned_cols=86 Identities=34% Similarity=0.586 Sum_probs=80.0
Q ss_pred ccchhhhhhhHhHHHhhhhhhhhhhhhhhccCCCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHhhhhcccccCCCCCC
Q psy14208 693 STEKSKEEDNESIVQLRILRVQEAIIKILKMRKRISNAQLQTELVDILKNMFLPSKKMIKEQIEWLIEQKYMRRDDDDIN 772 (778)
Q Consensus 693 ~~~~~~~~~~~~v~~~R~~~i~A~IVRiMK~~k~l~~~~L~~~v~~~l~~~F~p~~~~iK~~Ie~LIereyl~Rd~~d~~ 772 (778)
++..+.+.+.+.+.+||++.||||||||||+||+|+|++|+.+|+++|+++|.|++.+||+|||+||+||||+||++|++
T Consensus 7 e~~~e~~~t~~~v~~dR~~~i~AaIVRIMK~rK~l~h~~Lv~ev~~ql~~rF~p~~~~IKk~IE~LIereYleR~~~d~~ 86 (92)
T 1iuy_A 7 ESDPERKETRQKVDDDRKHEIEAAIVRIMKSRKKMQHNVLVAEVTQQLKARFLPSPVVIKKRIEGLIEREYLARTPEDRK 86 (92)
T ss_dssp CCCCCCCCCCSCSCCCTTTHHHHHHHHHHHHHCEEEHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHTTSEEECSSCSS
T ss_pred ccHHHHHHHHHHHHHHHHHHeeeeeeehhhccccccHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhhhhhhhcCCCCCC
Confidence 34445567788899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEecC
Q psy14208 773 VFVYLA 778 (778)
Q Consensus 773 ~y~Yia 778 (778)
+|+|+|
T Consensus 87 ~y~Y~A 92 (92)
T 1iuy_A 87 VYTYVA 92 (92)
T ss_dssp EEEEC-
T ss_pred eeEecC
Confidence 999998
No 11
>2do7_A Cullin-4B, CUL-4B; helix-turn-helix motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.92 E-value=2.1e-26 Score=197.88 Aligned_cols=84 Identities=35% Similarity=0.556 Sum_probs=79.2
Q ss_pred ccchhhhhhhHhHHHhhhhhhhhhhhhhhccCCCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHhhhhcccccCCCCCC
Q psy14208 693 STEKSKEEDNESIVQLRILRVQEAIIKILKMRKRISNAQLQTELVDILKNMFLPSKKMIKEQIEWLIEQKYMRRDDDDIN 772 (778)
Q Consensus 693 ~~~~~~~~~~~~v~~~R~~~i~A~IVRiMK~~k~l~~~~L~~~v~~~l~~~F~p~~~~iK~~Ie~LIereyl~Rd~~d~~ 772 (778)
++..+.+.+.+.+.+||++.||||||||||+||+|+|++|+.+|+++|+ |.|++.+||+|||.|||||||+||++|++
T Consensus 12 e~~~e~~~t~~~v~~dR~~~iqAaIVRIMK~rK~l~h~~Lv~eV~~ql~--F~p~~~~IKk~IE~LIereYleR~~~d~~ 89 (101)
T 2do7_A 12 ETVEEQASTTERVFQDRQYQIDAAIVRIMKMRKTLSHNLLVSEVYNQLK--FPVKPADLKKRIESLIDRDYMERDKENPN 89 (101)
T ss_dssp CCCCCCSSCCSHHHHHHHHHHHHHHHHHHHHSSEEEHHHHHHHHHHHCS--SCCCHHHHHHHHHHHHHTTSEEECSSCTT
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHcC--CCCCHHHHHHHHHHHhhhhHHhcCCCCCC
Confidence 3445567788999999999999999999999999999999999999997 99999999999999999999999999999
Q ss_pred ceEecC
Q psy14208 773 VFVYLA 778 (778)
Q Consensus 773 ~y~Yia 778 (778)
+|+|+|
T Consensus 90 ~y~YlA 95 (101)
T 2do7_A 90 QYNYIA 95 (101)
T ss_dssp EEEECC
T ss_pred eEEEec
Confidence 999998
No 12
>1wi9_A Protein C20ORF116 homolog; helix-turn-helix motif, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.47
Probab=81.38 E-value=0.72 Score=36.31 Aligned_cols=55 Identities=18% Similarity=0.183 Sum_probs=46.9
Q ss_pred hhhhhhccCCCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHhhhhcccccCCCCCCceEecC
Q psy14208 716 AIIKILKMRKRISNAQLQTELVDILKNMFLPSKKMIKEQIEWLIEQKYMRRDDDDINVFVYLA 778 (778)
Q Consensus 716 ~IVRiMK~~k~l~~~~L~~~v~~~l~~~F~p~~~~iK~~Ie~LIereyl~Rd~~d~~~y~Yia 778 (778)
..|...|.+|.+..++|- ..|..+.+++-.||+.|.+.|-|.---+|+..|+||+
T Consensus 11 ~Fi~yIk~~Kvv~LedLA--------~~F~l~t~~~i~RI~~Le~~g~ltGViDDRGKfIyIs 65 (72)
T 1wi9_A 11 EFINYIKKSKVVLLEDLA--------FQMGLRTQDAINRIQDLLTEGTLTGVIDDRGKFIYIT 65 (72)
T ss_dssp HHHHHHHHCSEECHHHHH--------HHHCSCHHHHHHHHHHHHHHSSSCEEECTTCCEEECC
T ss_pred HHHHHHHHcCeeeHHHHH--------HHhCCChHHHHHHHHHHHHCCCeEEEEeCCCCEEEec
Confidence 347778899988888664 3477899999999999999999999889999999985
No 13
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=80.39 E-value=3.6 Score=34.23 Aligned_cols=49 Identities=12% Similarity=0.004 Sum_probs=39.7
Q ss_pred cHHHHHHHHhhcCCCCCcccHHHHHHHcCCChHHHHHHHHHhhcccccccceeecc
Q psy14208 594 TTFQMAVLFAWNERPLDRLSFENLLLATELPDPELRRTLWSLVAFPKIKRQILLYS 649 (778)
Q Consensus 594 s~~Q~~ILl~FN~~~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~~k~k~~iL~~~ 649 (778)
+..+..||..+.+ .+.+|..+|++.+|++...+.++|..|...| ++...
T Consensus 23 ~~~~~~il~~l~~--~~~~s~~ela~~l~is~~tvs~~l~~L~~~g-----lv~~~ 71 (99)
T 3cuo_A 23 HPKRLLILCMLSG--SPGTSAGELTRITGLSASATSQHLARMRDEG-----LIDSQ 71 (99)
T ss_dssp SHHHHHHHHHHTT--CCSEEHHHHHHHHCCCHHHHHHHHHHHHHTT-----SEEEE
T ss_pred ChHHHHHHHHHHh--CCCcCHHHHHHHHCcCHHHHHHHHHHHHHCC-----CEEEE
Confidence 3567778877766 3579999999999999999999999998533 66654
No 14
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=77.40 E-value=5.4 Score=33.28 Aligned_cols=47 Identities=17% Similarity=0.152 Sum_probs=37.9
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHcCCChHHHHHHHHHhhcccccccceeecc
Q psy14208 595 TFQMAVLFAWNERPLDRLSFENLLLATELPDPELRRTLWSLVAFPKIKRQILLYS 649 (778)
Q Consensus 595 ~~Q~~ILl~FN~~~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~~k~k~~iL~~~ 649 (778)
.....||.++.+ +.+|+.+|++.+|++...+.++|..|...| ++...
T Consensus 23 ~~r~~Il~~L~~---~~~~~~ela~~l~is~~tvs~~L~~L~~~G-----lv~~~ 69 (98)
T 3jth_A 23 ERRLQILCMLHN---QELSVGELCAKLQLSQSALSQHLAWLRRDG-----LVTTR 69 (98)
T ss_dssp HHHHHHHHHTTT---SCEEHHHHHHHHTCCHHHHHHHHHHHHHTT-----SEEEE
T ss_pred HHHHHHHHHHhc---CCCCHHHHHHHHCcCHHHHHHHHHHHHHCC-----CeEEE
Confidence 445667777765 579999999999999999999999998643 66654
No 15
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=73.56 E-value=2.6 Score=34.03 Aligned_cols=58 Identities=22% Similarity=0.286 Sum_probs=43.2
Q ss_pred hhhhhhhccCCCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHhhhhcccccCCCCCCceEec
Q psy14208 715 EAIIKILKMRKRISNAQLQTELVDILKNMFLPSKKMIKEQIEWLIEQKYMRRDDDDINVFVYL 777 (778)
Q Consensus 715 A~IVRiMK~~k~l~~~~L~~~v~~~l~~~F~p~~~~iK~~Ie~LIereyl~Rd~~d~~~y~Yi 777 (778)
..|.+++-....++..+|...+-.. -..+...+...|+.|.++|||.|..+ ...|.|-
T Consensus 12 ~~vL~~L~~~~~~t~~ei~~~l~~~----~~~s~~Tv~~~l~rL~~kGlv~r~~~-gr~~~y~ 69 (82)
T 1p6r_A 12 LEVMKVIWKHSSINTNEVIKELSKT----STWSPKTIQTMLLRLIKKGALNHHKE-GRVFVYT 69 (82)
T ss_dssp HHHHHHHHTSSSEEHHHHHHHHHHH----SCCCHHHHHHHHHHHHHTTSEEEEEE-TTEEEEE
T ss_pred HHHHHHHHcCCCCCHHHHHHHHhhc----CCccHHHHHHHHHHHHHCCCeEEEec-CCEEEEE
Confidence 3445555556789999888777532 23577889999999999999999875 3477774
No 16
>1bby_A RAP30; average structure transcription regulation, DNA- binding domain, transcription; NMR {Homo sapiens} SCOP: a.4.5.15 PDB: 2bby_A
Probab=72.82 E-value=5.1 Score=31.41 Aligned_cols=57 Identities=12% Similarity=0.149 Sum_probs=43.3
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHcCCChHHHHHHHHHhhcccccccceeecccCCCCCCCCCCCCeEEEccccc
Q psy14208 597 QMAVLFAWNERPLDRLSFENLLLATELPDPELRRTLWSLVAFPKIKRQILLYSEEVQSPKDFTEHTSFWINQEFA 671 (778)
Q Consensus 597 Q~~ILl~FN~~~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~~k~k~~iL~~~~~~~~~~~~~~~~~f~lN~~F~ 671 (778)
.-.|+-+|.. +..+|+++|...|+=|+..|+.+|..++ ++.+.++ -.+.+.+-++|.
T Consensus 10 ~d~lF~~Fek--~~yw~lK~L~~~t~QP~~yLKeiL~~Ia--------~~~k~g~--------~~~~weLKpEyr 66 (69)
T 1bby_A 10 LDMLFSAFEK--HQYYNLKDLVDITKQPVVYLKEILKEIG--------VQNVKGI--------HKNTWELKPEYR 66 (69)
T ss_dssp HHHHHHHHHH--CSCBCHHHHHHHCCSCHHHHHHHHHHHC--------CCBCCTT--------CCCBBCCCCSSC
T ss_pred HHHHHHHHhh--cCCCcHHHHHHHHcCcHHHHHHHHHHHH--------HHHcCCC--------CCCeeeCcHHHh
Confidence 3456678888 5789999999999999999999999987 4554432 235666666665
No 17
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=72.80 E-value=4.6 Score=32.46 Aligned_cols=48 Identities=21% Similarity=0.113 Sum_probs=35.4
Q ss_pred HHHHHhhcCCC-CCcccHHHHHHHcCCChHHHHHHHHHhhcccccccceeeccc
Q psy14208 598 MAVLFAWNERP-LDRLSFENLLLATELPDPELRRTLWSLVAFPKIKRQILLYSE 650 (778)
Q Consensus 598 ~~ILl~FN~~~-~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~~k~k~~iL~~~~ 650 (778)
..||.++.+.+ .+.+|..+|++.+|++...+.++|..|...+ ++...+
T Consensus 17 ~~IL~~L~~~~~~~~~t~~eLA~~Lgvs~~tV~~~L~~L~~~G-----~I~~~g 65 (77)
T 1qgp_A 17 QRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKKG-----KLQKEA 65 (77)
T ss_dssp HHHHHHHHHHCSSSCEEHHHHHHHHCCCHHHHHHHHHHHHHHT-----SEEEEC
T ss_pred HHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCC-----CEEecC
Confidence 55655554421 2479999999999999999999999997532 565543
No 18
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=72.73 E-value=3.3 Score=34.92 Aligned_cols=50 Identities=10% Similarity=0.031 Sum_probs=40.9
Q ss_pred ecHHHHHHHHhhcCCCCCcccHHHHHHHcCCChHHHHHHHHHhhcccccccceeecc
Q psy14208 593 VTTFQMAVLFAWNERPLDRLSFENLLLATELPDPELRRTLWSLVAFPKIKRQILLYS 649 (778)
Q Consensus 593 ~s~~Q~~ILl~FN~~~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~~k~k~~iL~~~ 649 (778)
++..|..||..+.. ++.+|..+|++.+|++...+.++|..|...| ++.+.
T Consensus 18 l~~~~~~il~~l~~--~~~~s~~ela~~l~is~~tv~~~l~~L~~~g-----lv~~~ 67 (109)
T 1sfx_A 18 FKPSDVRIYSLLLE--RGGMRVSEIARELDLSARFVRDRLKVLLKRG-----FVRRE 67 (109)
T ss_dssp CCHHHHHHHHHHHH--HCCBCHHHHHHHHTCCHHHHHHHHHHHHHTT-----SEEEE
T ss_pred CCHHHHHHHHHHHH--cCCCCHHHHHHHHCCCHHHHHHHHHHHHHCC-----CEEEE
Confidence 46778888887765 3679999999999999999999999998632 66653
No 19
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=72.31 E-value=8.6 Score=32.29 Aligned_cols=47 Identities=17% Similarity=0.166 Sum_probs=36.4
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHcCCChHHHHHHHHHhhcccccccceeecc
Q psy14208 595 TFQMAVLFAWNERPLDRLSFENLLLATELPDPELRRTLWSLVAFPKIKRQILLYS 649 (778)
Q Consensus 595 ~~Q~~ILl~FN~~~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~~k~k~~iL~~~ 649 (778)
.....||..+.+ +.+|+.+|++.+|++...+.++|..|...| ++...
T Consensus 23 ~~r~~Il~~L~~---~~~~~~ela~~l~is~~tvs~~L~~L~~~G-----lv~~~ 69 (102)
T 3pqk_A 23 PVRLMLVCTLVE---GEFSVGELEQQIGIGQPTLSQQLGVLRESG-----IVETR 69 (102)
T ss_dssp HHHHHHHHHHHT---CCBCHHHHHHHHTCCTTHHHHHHHHHHHTT-----SEEEE
T ss_pred HHHHHHHHHHHh---CCCCHHHHHHHHCcCHHHHHHHHHHHHHCC-----CeEEE
Confidence 344556655544 469999999999999999999999998643 67654
No 20
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=71.69 E-value=8.2 Score=32.06 Aligned_cols=47 Identities=17% Similarity=0.056 Sum_probs=36.9
Q ss_pred cHHHHHHHHhhcCCCCCcccHHHHHHHcCCChHHHHHHHHHhhcccccccceeecc
Q psy14208 594 TTFQMAVLFAWNERPLDRLSFENLLLATELPDPELRRTLWSLVAFPKIKRQILLYS 649 (778)
Q Consensus 594 s~~Q~~ILl~FN~~~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~~k~k~~iL~~~ 649 (778)
+..+..||.++ + +.+|+.+|++.+|++...+.++|..|...+ ++...
T Consensus 30 ~~~r~~Il~~L-~---~~~~~~eLa~~l~is~~tv~~~L~~L~~~G-----lv~~~ 76 (96)
T 1y0u_A 30 NPVRRKILRML-D---KGRSEEEIMQTLSLSKKQLDYHLKVLEAGF-----CIERV 76 (96)
T ss_dssp CHHHHHHHHHH-H---TTCCHHHHHHHHTCCHHHHHHHHHHHHHTT-----SEEEE
T ss_pred CHHHHHHHHHH-c---CCCCHHHHHHHHCcCHHHHHHHHHHHHHCC-----CEEEE
Confidence 34566677666 4 468999999999999999999999998643 66643
No 21
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=70.02 E-value=1.5 Score=37.35 Aligned_cols=60 Identities=10% Similarity=0.190 Sum_probs=43.5
Q ss_pred hhhhhhhhccCCCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHhhhhcccccCCCCCCceEecC
Q psy14208 714 QEAIIKILKMRKRISNAQLQTELVDILKNMFLPSKKMIKEQIEWLIEQKYMRRDDDDINVFVYLA 778 (778)
Q Consensus 714 ~A~IVRiMK~~k~l~~~~L~~~v~~~l~~~F~p~~~~iK~~Ie~LIereyl~Rd~~d~~~y~Yia 778 (778)
|..|.+++-....++..||...+.. .-.++...|...|+.|.++|||+|..+ ...|.|-|
T Consensus 37 e~~VL~~L~~~~~~t~~eL~~~l~~----~~~~s~sTVt~~L~rLe~KGlV~R~~~-gR~~~Y~p 96 (99)
T 2k4b_A 37 ELIVMRVIWSLGEARVDEIYAQIPQ----ELEWSLATVKTLLGRLVKKEMLSTEKE-GRKFVYRP 96 (99)
T ss_dssp CSHHHHHHHHHSCEEHHHHHHTCCG----GGCCCHHHHHHHHHHHHHTTSCEEEEE-TTEEEEEC
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHhc----ccCCCHhhHHHHHHHHHHCCCEEEEeC-CCEEEEEE
Confidence 3445566655667888877755532 123577899999999999999999864 56888865
No 22
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=69.54 E-value=12 Score=34.68 Aligned_cols=60 Identities=13% Similarity=0.149 Sum_probs=41.8
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHcCCChHHHHHHHHHhhcccccccceeecccCCCCCCCCCCCCeEEEccc
Q psy14208 596 FQMAVLFAWNERPLDRLSFENLLLATELPDPELRRTLWSLVAFPKIKRQILLYSEEVQSPKDFTEHTSFWINQE 669 (778)
Q Consensus 596 ~Q~~ILl~FN~~~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~~k~k~~iL~~~~~~~~~~~~~~~~~f~lN~~ 669 (778)
+.+.+.|.-+.. ...+|.++|++.+++|...+.+.|..|...| ++....+ .++-|.+..+
T Consensus 30 lr~L~~LA~~~~-~~~~s~~eIA~~~~i~~~~l~kil~~L~~aG-----lv~s~rG--------~~GGy~Lar~ 89 (159)
T 3lwf_A 30 LTITLELAKRIG-DGPISLRSIAQDKNLSEHYLEQLIGPLRNAG-----IVKSIRG--------AHGGYVLNGD 89 (159)
T ss_dssp HHHHHHHHHTTT-SCCBCHHHHHHHHTCCHHHHHHHHHHHHHTT-----SEEEECS--------TTCEEEECSC
T ss_pred HHHHHHHHhcCC-CCCcCHHHHHHHHCcCHHHHHHHHHHHHHCC-----eEEEecC--------CCCceEecCC
Confidence 444555554431 3569999999999999999999999998543 7765432 3345666553
No 23
>3lmm_A Uncharacterized protein; multi-domained alpha-beta protein, structural genomics, PSI- 2, protein structure initiative; 3.00A {Corynebacterium diphtheriae}
Probab=69.09 E-value=3.3 Score=47.08 Aligned_cols=139 Identities=9% Similarity=0.038 Sum_probs=46.9
Q ss_pred cHHHHHHHHhhcCCCCCcccHHHHHHHcCCChHHHHHHHHHhhcccccccceeecccCCCCCCCCCCCCeEEEccccccc
Q psy14208 594 TTFQMAVLFAWNERPLDRLSFENLLLATELPDPELRRTLWSLVAFPKIKRQILLYSEEVQSPKDFTEHTSFWINQEFALV 673 (778)
Q Consensus 594 s~~Q~~ILl~FN~~~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~~k~k~~iL~~~~~~~~~~~~~~~~~f~lN~~F~~~ 673 (778)
+..+..||..+.+ +..+|..+|++.+|++...+.+.|..|...+-...+++... ++.|.|+......
T Consensus 429 ~~~~~~iL~~l~~--~~~it~~~la~~l~~s~~~~~~~L~~L~~~~~~~~glie~~-----------g~~y~L~~~~~~~ 495 (583)
T 3lmm_A 429 DYRIAIVLYLLFQ--RPFITIDVVARGLQSGKEAARNALEAARQTTVAGAPLIIAH-----------DGVWLLGNACREI 495 (583)
T ss_dssp CHHHHHHHHHHHH--SSSBCHHHHHHHHTSCHHHHHHHHHHHHTCEETTEESEEEE-----------TTEEEECHHHHHH
T ss_pred chhHHHHHHHHHH--CCCcCHHHHHHHhCcCHHHHHHHHHHHHhhhccccceEEEe-----------CCEEEECHHHHHH
Confidence 3567777766555 36899999999999999999999999985110001255542 2579988875410
Q ss_pred cccccccceeeeeccccccccchhhhhhhHhHHHhhhhhhhhhhhhhhccCCCCChHHHHHHHHHHHhcCCCCChhhHHH
Q psy14208 674 KMGKILKRGKINLIGRLQLSTEKSKEEDNESIVQLRILRVQEAIIKILKMRKRISNAQLQTELVDILKNMFLPSKKMIKE 753 (778)
Q Consensus 674 ~~~k~~~~~ki~~~~~~~~~~~~~~~~~~~~v~~~R~~~i~A~IVRiMK~~k~l~~~~L~~~v~~~l~~~F~p~~~~iK~ 753 (778)
... ....+ ... .....+. ....+..|+..++.++.++-.|+.+.+ ..+.....+
T Consensus 496 -----~~~--~~~~~---~~~-----~~~~~~~---~~~~~~~I~~~l~~~g~it~~di~~l~--------~ls~~qa~~ 549 (583)
T 3lmm_A 496 -----LRK--VEPSP---FSP-----VRYLSTD---QAELTNAAMLWLSEVGDLATSDLMAMC--------GVSRGTAKA 549 (583)
T ss_dssp -----HTS--CC--------------------------------------------------------------------
T ss_pred -----hcc--ccccc---ccc-----cccccCC---hhHHHHHHHHHHHHcCCcCHHHHHHHH--------CCCHHHHHH
Confidence 000 00000 000 0000110 234556789999999999988777533 245677899
Q ss_pred HHHHhhhhcccccCCCCC
Q psy14208 754 QIEWLIEQKYMRRDDDDI 771 (778)
Q Consensus 754 ~Ie~LIereyl~Rd~~d~ 771 (778)
.|..|+++|-|++.+..+
T Consensus 550 ~L~~Lv~~G~l~~~G~gr 567 (583)
T 3lmm_A 550 CVDGLVDEERVVAVGGGR 567 (583)
T ss_dssp ------------------
T ss_pred HHHHHHHCCcEEEeCCCC
Confidence 999999999999876544
No 24
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=68.82 E-value=12 Score=33.78 Aligned_cols=47 Identities=15% Similarity=0.131 Sum_probs=34.6
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHcCCChHHHHHHHHHhhcccccccceeecc
Q psy14208 597 QMAVLFAWNERPLDRLSFENLLLATELPDPELRRTLWSLVAFPKIKRQILLYS 649 (778)
Q Consensus 597 Q~~ILl~FN~~~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~~k~k~~iL~~~ 649 (778)
++.+.|.-+.. ...+|.++|++.+|+|...+.+.|..|...| ++...
T Consensus 15 ~~L~~La~~~~-~~~~s~~~IA~~~~i~~~~l~kil~~L~~aG-----lv~s~ 61 (143)
T 3t8r_A 15 TLMISLAKKEG-QGCISLKSIAEENNLSDLYLEQLVGPLRNAG-----LIRSV 61 (143)
T ss_dssp HHHHHHHTTTT-SCCEEHHHHHHHTTCCHHHHHHHHHHHHHTT-----SEEEC
T ss_pred HHHHHHHhCCC-CCCcCHHHHHHHHCcCHHHHHHHHHHHHHCC-----EEEec
Confidence 34444444431 2469999999999999999999999998543 76643
No 25
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=68.18 E-value=5.7 Score=31.91 Aligned_cols=37 Identities=16% Similarity=0.050 Sum_probs=31.6
Q ss_pred CcccHHHHHHHcCCChHHHHHHHHHhhcccccccceeecccC
Q psy14208 610 DRLSFENLLLATELPDPELRRTLWSLVAFPKIKRQILLYSEE 651 (778)
Q Consensus 610 ~~~t~~ei~~~t~i~~~~l~~~L~sL~~~~k~k~~iL~~~~~ 651 (778)
...|+.||++.+|++...+.+.|..|... ++|.+.++
T Consensus 23 ~~psv~EIa~~lgvS~~TVrr~L~~Le~k-----G~I~R~~g 59 (77)
T 2jt1_A 23 APVKTRDIADAAGLSIYQVRLYLEQLHDV-----GVLEKVNA 59 (77)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHHHHHHT-----TSEEEESC
T ss_pred CCcCHHHHHHHHCCCHHHHHHHHHHHHHC-----CcEEecCC
Confidence 57899999999999999999999999853 37777654
No 26
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=68.15 E-value=5.1 Score=35.31 Aligned_cols=52 Identities=21% Similarity=0.249 Sum_probs=41.3
Q ss_pred EecHHHHHHHHhhcCCCCCc-ccHHHHHHHcCCChHHHHHHHHHhhcccccccceeecc
Q psy14208 592 DVTTFQMAVLFAWNERPLDR-LSFENLLLATELPDPELRRTLWSLVAFPKIKRQILLYS 649 (778)
Q Consensus 592 ~~s~~Q~~ILl~FN~~~~~~-~t~~ei~~~t~i~~~~l~~~L~sL~~~~k~k~~iL~~~ 649 (778)
.++..|..||..+-+. .+. +|..+|++.+|++...+.++|..|...| ++.+.
T Consensus 23 gLt~~e~~il~~L~~~-~~~~~t~~eLa~~l~~s~sTV~r~L~~L~~~G-----lV~r~ 75 (123)
T 3r0a_A 23 NLTKADLNVMKSFLNE-PDRWIDTDALSKSLKLDVSTVQRSVKKLHEKE-----ILQRS 75 (123)
T ss_dssp TCCHHHHHHHHHHHHS-TTCCEEHHHHHHHHTSCHHHHHHHHHHHHHTT-----SEEEE
T ss_pred CCCHHHHHHHHHHHHC-CCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCC-----CEEee
Confidence 3577888888777652 234 9999999999999999999999998643 66654
No 27
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=67.05 E-value=5.8 Score=31.97 Aligned_cols=53 Identities=21% Similarity=0.130 Sum_probs=42.7
Q ss_pred EecHHHHHHHHhhcCCCC-CcccHHHHHHHc-----CCChHHHHHHHHHhhcccccccceeeccc
Q psy14208 592 DVTTFQMAVLFAWNERPL-DRLSFENLLLAT-----ELPDPELRRTLWSLVAFPKIKRQILLYSE 650 (778)
Q Consensus 592 ~~s~~Q~~ILl~FN~~~~-~~~t~~ei~~~t-----~i~~~~l~~~L~sL~~~~k~k~~iL~~~~ 650 (778)
..+.-+..||-.+.+. . +.+|.+||++.+ +++...+.++|..|...| ++.+.+
T Consensus 14 ~~t~~r~~IL~~l~~~-~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~G-----lv~~~~ 72 (83)
T 2fu4_A 14 KVTLPRLKILEVLQEP-DNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG-----IVTRHN 72 (83)
T ss_dssp CCCHHHHHHHHHHTSG-GGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT-----SEEEEE
T ss_pred CcCHHHHHHHHHHHhC-CCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC-----CeEEEe
Confidence 3567788899888763 2 579999999999 999999999999999643 666543
No 28
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=67.03 E-value=6.7 Score=31.89 Aligned_cols=44 Identities=11% Similarity=0.140 Sum_probs=33.0
Q ss_pred HHHHhhcCCCCCcccHHHHHHHcCCChHHHHHHHHHhhcccccccceeeccc
Q psy14208 599 AVLFAWNERPLDRLSFENLLLATELPDPELRRTLWSLVAFPKIKRQILLYSE 650 (778)
Q Consensus 599 ~ILl~FN~~~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~~k~k~~iL~~~~ 650 (778)
-||.++.. ++ +|+.+|++.+|++...+.++|..|...| ++.+.+
T Consensus 21 ~IL~lL~~--~g-~sa~eLAk~LgiSk~aVr~~L~~Le~eG-----~I~~~~ 64 (82)
T 1oyi_A 21 EAIKTIGI--EG-ATAAQLTRQLNMEKREVNKALYDLQRSA-----MVYSSD 64 (82)
T ss_dssp HHHHHHSS--ST-EEHHHHHHHSSSCHHHHHHHHHHHHHHT-----SSEECS
T ss_pred HHHHHHHH--cC-CCHHHHHHHHCcCHHHHHHHHHHHHHCC-----CEEeCC
Confidence 34444444 23 9999999999999999999999997532 666543
No 29
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=66.81 E-value=6.9 Score=34.88 Aligned_cols=51 Identities=20% Similarity=0.118 Sum_probs=43.2
Q ss_pred ecHHHHHHHHhhcCCCCCcccHHHHHHHcCCChHHHHHHHHHhhcccccccceeeccc
Q psy14208 593 VTTFQMAVLFAWNERPLDRLSFENLLLATELPDPELRRTLWSLVAFPKIKRQILLYSE 650 (778)
Q Consensus 593 ~s~~Q~~ILl~FN~~~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~~k~k~~iL~~~~ 650 (778)
+|..|..||..... ++++|..+|++.++++...+.+.+..|... +++.+.+
T Consensus 34 lt~~q~~vL~~l~~--~~~~t~~eLa~~l~~~~~tvs~~l~~L~~~-----Glv~r~~ 84 (140)
T 3hsr_A 34 LTYTGYIVLMAIEN--DEKLNIKKLGERVFLDSGTLTPLLKKLEKK-----DYVVRTR 84 (140)
T ss_dssp CCHHHHHHHHHSCT--TCEEEHHHHHHHHTCCHHHHHHHHHHHHHT-----TSEEEEC
T ss_pred CCHHHHHHHHHHHH--cCCcCHHHHHHHHCCChhhHHHHHHHHHHC-----CCeEecC
Confidence 47889999988876 478999999999999999999999999853 2777654
No 30
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=66.72 E-value=8 Score=34.51 Aligned_cols=51 Identities=22% Similarity=0.207 Sum_probs=42.2
Q ss_pred EecHHHHHHHHhhcCCCCCcccHHHHHHHcCCChHHHHHHHHHhhcccccccceeeccc
Q psy14208 592 DVTTFQMAVLFAWNERPLDRLSFENLLLATELPDPELRRTLWSLVAFPKIKRQILLYSE 650 (778)
Q Consensus 592 ~~s~~Q~~ILl~FN~~~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~~k~k~~iL~~~~ 650 (778)
.+|..|..||..+.. ++ +|..+|++.+|++...+.+.|..|... +++.+.+
T Consensus 35 ~lt~~~~~iL~~l~~--~~-~t~~eLa~~l~~s~~tvs~~l~~L~~~-----Glv~r~~ 85 (146)
T 3tgn_A 35 ALTNTQEHILMLLSE--ES-LTNSELARRLNVSQAAVTKAIKSLVKE-----GMLETSK 85 (146)
T ss_dssp CCCHHHHHHHHHHTT--CC-CCHHHHHHHHTCCHHHHHHHHHHHHHT-----TSEEC--
T ss_pred CCCHHHHHHHHHHHh--CC-CCHHHHHHHHCCCHHHHHHHHHHHHHC-----CCeEecc
Confidence 368889999998887 35 999999999999999999999999853 2777643
No 31
>2xub_A DNA-directed RNA polymerase III subunit RPC3; transcription, winged helix; 2.80A {Homo sapiens} PDB: 2xv4_S
Probab=66.31 E-value=15 Score=41.26 Aligned_cols=127 Identities=10% Similarity=0.099 Sum_probs=84.5
Q ss_pred CcccHHHHHHHcCCChHHHHHHHHHhhcccccccceeecccCCCCCCCCCCCCeEEEccccccccccccccceeeeeccc
Q psy14208 610 DRLSFENLLLATELPDPELRRTLWSLVAFPKIKRQILLYSEEVQSPKDFTEHTSFWINQEFALVKMGKILKRGKINLIGR 689 (778)
Q Consensus 610 ~~~t~~ei~~~t~i~~~~l~~~L~sL~~~~k~k~~iL~~~~~~~~~~~~~~~~~f~lN~~F~~~~~~k~~~~~ki~~~~~ 689 (778)
+.+|+.+|...|+++...++.+|..|+++. ++...+.+ . ....|.+|.+=- ..+++.+-.
T Consensus 32 G~ltL~~I~~~t~L~~~~Vk~~L~vLIQh~-----lV~~~~~~---~---~~~~Y~~~~~~i-------l~~lR~pk~-- 91 (534)
T 2xub_A 32 GSQPLRVIAHDTGTSLDQVKKALCVLVQHN-----LVSYQVHK---R---GVVEYEAQCSRV-------LRMLRYPRY-- 91 (534)
T ss_dssp CSEEHHHHHHHHTCCHHHHHHHHHHHHHTT-----SEEEEEET---T---TEEEEEECHHHH-------HGGGGHHHH--
T ss_pred CCcCHHHHHHHhCCCHHHHHHHHHHHHhcC-----CeeEEeCC---C---CcEEEEEChhhH-------HHHHhhHHH--
Confidence 789999999999999999999999999742 66654321 0 124566664322 122332211
Q ss_pred cccccchhhhhhhHhHHHhhhhhhhhhhhhhhccCCCCChHHHHHHHHHHHhcC----CCCChhhHHHHHHHhhhhcccc
Q psy14208 690 LQLSTEKSKEEDNESIVQLRILRVQEAIIKILKMRKRISNAQLQTELVDILKNM----FLPSKKMIKEQIEWLIEQKYMR 765 (778)
Q Consensus 690 ~~~~~~~~~~~~~~~v~~~R~~~i~A~IVRiMK~~k~l~~~~L~~~v~~~l~~~----F~p~~~~iK~~Ie~LIereyl~ 765 (778)
-...+.+---.-|.|+-.+=..+.++.++|+..+...+... =.++...+...+..|++.+||.
T Consensus 92 -------------l~~i~~~~G~~a~~I~~~ll~~G~~t~~~ll~~~~~~~~~~~~~~~~~~~~~l~~~f~~Lv~~~fI~ 158 (534)
T 2xub_A 92 -------------IYTTKTLYSDTGELIVEELLLNGKLTMSAVVKKVADRLTETMEDGKTMDYAEVSNTFVRLADTHFVQ 158 (534)
T ss_dssp -------------HHHHHHHHHHHHHHHHHHHHHHCCBCHHHHHHHHHHHHHHTSSSSCCCCHHHHHHHHHHHHHTTSEE
T ss_pred -------------HHHHHHHhcHHHHHHHHHHHHcCCccHHHHHHHHHhhcccccccccccCHHHHHHHHHHHHhCCCEE
Confidence 00111111123355666667789999999999988765421 1256889999999999999999
Q ss_pred cCCC
Q psy14208 766 RDDD 769 (778)
Q Consensus 766 Rd~~ 769 (778)
|.+.
T Consensus 159 rv~~ 162 (534)
T 2xub_A 159 RCPS 162 (534)
T ss_dssp ECCC
T ss_pred eCCC
Confidence 9764
No 32
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=66.27 E-value=12 Score=29.88 Aligned_cols=44 Identities=18% Similarity=0.041 Sum_probs=33.9
Q ss_pred HHHHhhcCCCCCcccHHHHHHHcCCChHHHHHHHHHhhcccccccceeecc
Q psy14208 599 AVLFAWNERPLDRLSFENLLLATELPDPELRRTLWSLVAFPKIKRQILLYS 649 (778)
Q Consensus 599 ~ILl~FN~~~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~~k~k~~iL~~~ 649 (778)
.||.++.+ .+.+|..||++.+|++...+.+.|..|...| ++...
T Consensus 4 ~Il~~L~~--~~~~s~~eLa~~lgvs~~tv~r~L~~L~~~G-----lI~~~ 47 (81)
T 2htj_A 4 EILEFLNR--HNGGKTAEIAEALAVTDYQARYYLLLLEKAG-----MVQRS 47 (81)
T ss_dssp HHHHHHHH--SCCCCHHHHHHHHTSCHHHHHHHHHHHHHHT-----SEEEE
T ss_pred HHHHHHHH--cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCC-----CEEEe
Confidence 35555544 2569999999999999999999999998633 66643
No 33
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=66.16 E-value=9.1 Score=33.51 Aligned_cols=48 Identities=8% Similarity=0.079 Sum_probs=36.7
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHcCCChHHHHHHHHHhhcccccccceeecc
Q psy14208 595 TFQMAVLFAWNERPLDRLSFENLLLATELPDPELRRTLWSLVAFPKIKRQILLYS 649 (778)
Q Consensus 595 ~~Q~~ILl~FN~~~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~~k~k~~iL~~~ 649 (778)
..+..||..+.. .+.+|+.+|++.+|++...+.++|..|...| ++...
T Consensus 42 ~~rl~IL~~L~~--~~~~s~~eLa~~l~is~stvs~~L~~L~~~G-----lv~~~ 89 (122)
T 1u2w_A 42 ENRAKITYALCQ--DEELCVCDIANILGVTIANASHHLRTLYKQG-----VVNFR 89 (122)
T ss_dssp HHHHHHHHHHHH--SSCEEHHHHHHHHTCCHHHHHHHHHHHHHTT-----SEEEC
T ss_pred HHHHHHHHHHHH--CCCcCHHHHHHHHCcCHHHHHHHHHHHHHCC-----CeEEE
Confidence 445556666653 2579999999999999999999999998643 66543
No 34
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=66.03 E-value=6.3 Score=34.94 Aligned_cols=53 Identities=17% Similarity=0.097 Sum_probs=42.7
Q ss_pred ecHHHHHHHHhhcCCCCCcccHHHHHHHcCCChHHHHHHHHHhhcccccccceeeccc
Q psy14208 593 VTTFQMAVLFAWNERPLDRLSFENLLLATELPDPELRRTLWSLVAFPKIKRQILLYSE 650 (778)
Q Consensus 593 ~s~~Q~~ILl~FN~~~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~~k~k~~iL~~~~ 650 (778)
+|..|..||..+...+.+++|..+|++.+|++...+.+.+..|... +++.+.+
T Consensus 29 lt~~~~~vL~~l~~~~~~~~t~~ela~~l~~~~~tvs~~l~~Le~~-----Gli~r~~ 81 (139)
T 3eco_A 29 ITNEQGHTLGYLYAHQQDGLTQNDIAKALQRTGPTVSNLLRNLERK-----KLIYRYV 81 (139)
T ss_dssp CCHHHHHHHHHHHHSTTTCEEHHHHHHHHTCCHHHHHHHHHHHHHT-----TSEEEEE
T ss_pred CCHHHHHHHHHHHhcCCCCcCHHHHHHHhCCCcccHHHHHHHHHHC-----CCEeecC
Confidence 4678888888776642358999999999999999999999999853 2776654
No 35
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=65.90 E-value=3.5 Score=34.37 Aligned_cols=47 Identities=13% Similarity=0.088 Sum_probs=39.2
Q ss_pred EEecHHHHHHHHhhcCCCCCcccHHHHHHHcCCChHHHHHHHHHhhc
Q psy14208 591 LDVTTFQMAVLFAWNERPLDRLSFENLLLATELPDPELRRTLWSLVA 637 (778)
Q Consensus 591 l~~s~~Q~~ILl~FN~~~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~ 637 (778)
..++..|..||....+..++.++..+|++.++++...+.++|..|..
T Consensus 16 ~~Lt~~q~~Vl~~I~~~g~~gi~qkeLa~~~~l~~~tvt~iLk~LE~ 62 (91)
T 2dk5_A 16 KGSDNQEKLVYQIIEDAGNKGIWSRDVRYKSNLPLTEINKILKNLES 62 (91)
T ss_dssp CCSCSSHHHHHHHHHHHCTTCEEHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHcCCCCcCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34577899999777653235899999999999999999999999985
No 36
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=65.65 E-value=11 Score=30.66 Aligned_cols=49 Identities=20% Similarity=0.130 Sum_probs=35.6
Q ss_pred HHHHHHhhcCC-CCCcccHHHHHHHcCCChHHHHHHHHHhhcccccccceeeccc
Q psy14208 597 QMAVLFAWNER-PLDRLSFENLLLATELPDPELRRTLWSLVAFPKIKRQILLYSE 650 (778)
Q Consensus 597 Q~~ILl~FN~~-~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~~k~k~~iL~~~~ 650 (778)
+..||.++-+. +.+.+|..+|++.+|++...+.++|..|...| ++.+.+
T Consensus 12 ~~~IL~~L~~~~pg~~~t~~eLA~~Lgvsr~tV~~~L~~Le~~G-----~I~~~g 61 (81)
T 1qbj_A 12 EQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKKG-----KLQKEA 61 (81)
T ss_dssp HHHHHHHHHHHCTTCCBCHHHHHHHHTCCHHHHHHHHHHHHHTT-----SEEEES
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCC-----CEEecC
Confidence 44455555442 12479999999999999999999999997533 565543
No 37
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=65.31 E-value=5.1 Score=36.06 Aligned_cols=28 Identities=11% Similarity=0.140 Sum_probs=24.9
Q ss_pred HHhcCCCCChhhHHHHHHHhhhhccccc
Q psy14208 739 ILKNMFLPSKKMIKEQIEWLIEQKYMRR 766 (778)
Q Consensus 739 ~l~~~F~p~~~~iK~~Ie~LIereyl~R 766 (778)
.++.++..++..|-+.|..|+++|||+|
T Consensus 56 ~LA~~~~~s~~~v~~~L~~L~~KGlI~i 83 (135)
T 2v79_A 56 QLQEGMSISVEECTNRLRMFIQKGFLFI 83 (135)
T ss_dssp HHHTTSSSCHHHHHHHHHHHHHHTSCEE
T ss_pred HHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 3456788899999999999999999999
No 38
>3r4k_A Transcriptional regulator, ICLR family; DNA/RNA-binding 3-helical bundle, profilin-like, structural joint center for structural genomics, JCSG; 2.46A {Ruegeria SP}
Probab=65.07 E-value=6.4 Score=39.70 Aligned_cols=59 Identities=12% Similarity=0.149 Sum_probs=45.9
Q ss_pred HHHHHhhcCCCCCcccHHHHHHHcCCChHHHHHHHHHhhcccccccceeecccCCCCCCCCCCCCeEEEccccc
Q psy14208 598 MAVLFAWNERPLDRLSFENLLLATELPDPELRRTLWSLVAFPKIKRQILLYSEEVQSPKDFTEHTSFWINQEFA 671 (778)
Q Consensus 598 ~~ILl~FN~~~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~~k~k~~iL~~~~~~~~~~~~~~~~~f~lN~~F~ 671 (778)
..||.+|.+. ...+|+.||++.+|++...+.+.|..|...+ +|.+.+ .+..|.+-..+-
T Consensus 9 l~IL~~l~~~-~~~lsl~eia~~lgl~ksT~~RlL~tL~~~G-----~v~~~~---------~~~~Y~lG~~~~ 67 (260)
T 3r4k_A 9 LTLLTYFNHG-RLEIGLSDLTRLSGMNKATVYRLMSELQEAG-----FVEQVE---------GARSYRLGPQVL 67 (260)
T ss_dssp HHHHTTCBTT-BSEEEHHHHHHHHCSCHHHHHHHHHHHHHTT-----SEEECS---------SSSEEEECTTHH
T ss_pred HHHHHHHhhC-CCCCCHHHHHHHHCcCHHHHHHHHHHHHHCC-----CEEEcC---------CCCcEEcCHHHH
Confidence 3477788763 3679999999999999999999999999643 787754 235787776553
No 39
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=64.83 E-value=3.9 Score=33.00 Aligned_cols=44 Identities=20% Similarity=0.266 Sum_probs=37.1
Q ss_pred hhhhhhccCCCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHhhhhcccccC
Q psy14208 716 AIIKILKMRKRISNAQLQTELVDILKNMFLPSKKMIKEQIEWLIEQKYMRRD 767 (778)
Q Consensus 716 ~IVRiMK~~k~l~~~~L~~~v~~~l~~~F~p~~~~iK~~Ie~LIereyl~Rd 767 (778)
.|...++.++.++.+||. ..|..++..|.+-|+.|.++|+|+|.
T Consensus 6 ~Il~~L~~~g~vsv~eLa--------~~l~VS~~TIRrdL~~Le~~G~l~R~ 49 (78)
T 1xn7_A 6 QVRDLLALRGRMEAAQIS--------QTLNTPQPMINAMLQQLESMGKAVRI 49 (78)
T ss_dssp HHHHHHHHSCSBCHHHHH--------HHTTCCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHcCCCcHHHHH--------HHHCcCHHHHHHHHHHHHHCCCEEEe
Confidence 466777888888887654 34789999999999999999999997
No 40
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=64.09 E-value=11 Score=34.09 Aligned_cols=50 Identities=12% Similarity=0.078 Sum_probs=41.9
Q ss_pred ecHHHHHHHHhhcCCCCCcccHHHHHHHcCCChHHHHHHHHHhhcccccccceeecc
Q psy14208 593 VTTFQMAVLFAWNERPLDRLSFENLLLATELPDPELRRTLWSLVAFPKIKRQILLYS 649 (778)
Q Consensus 593 ~s~~Q~~ILl~FN~~~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~~k~k~~iL~~~ 649 (778)
++..|..||..+.. .+.+|..+|++.+|++...+.+.|..|... +++.+.
T Consensus 41 lt~~~~~iL~~l~~--~~~~t~~ela~~l~i~~~tvs~~l~~Le~~-----Glv~r~ 90 (155)
T 3cdh_A 41 LRVPEWRVLACLVD--NDAMMITRLAKLSLMEQSRMTRIVDQMDAR-----GLVTRV 90 (155)
T ss_dssp CCHHHHHHHHHHSS--CSCBCHHHHHHHTTCCHHHHHHHHHHHHHT-----TSEEEC
T ss_pred CCHHHHHHHHHHHH--CCCcCHHHHHHHHCCCHHHHHHHHHHHHHC-----CCEEec
Confidence 47789999988876 467999999999999999999999999853 266654
No 41
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=63.40 E-value=5.9 Score=35.36 Aligned_cols=51 Identities=16% Similarity=0.106 Sum_probs=38.9
Q ss_pred ecHHHHHHHHhhcCCCCCcccHHHHHHHcCCChHHHHHHHHHhhcccccccceeeccc
Q psy14208 593 VTTFQMAVLFAWNERPLDRLSFENLLLATELPDPELRRTLWSLVAFPKIKRQILLYSE 650 (778)
Q Consensus 593 ~s~~Q~~ILl~FN~~~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~~k~k~~iL~~~~ 650 (778)
+|..|..||..... ++++|..+|++.+|++...+.+.+..|... +++.+.+
T Consensus 35 lt~~~~~vL~~l~~--~~~~t~~eLa~~l~~~~~tvs~~l~~L~~~-----Glv~r~~ 85 (142)
T 3ech_A 35 LTPPDVHVLKLIDE--QRGLNLQDLGRQMCRDKALITRKIRELEGR-----NLVRRER 85 (142)
T ss_dssp CCHHHHHHHHHHHH--TTTCCHHHHHHHHC---CHHHHHHHHHHHT-----TSEEC--
T ss_pred CCHHHHHHHHHHHh--CCCcCHHHHHHHhCCCHHHHHHHHHHHHHC-----CCEeecc
Confidence 57889999988877 367999999999999999999999999853 2777653
No 42
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=63.17 E-value=6.8 Score=35.06 Aligned_cols=51 Identities=14% Similarity=0.136 Sum_probs=42.1
Q ss_pred ecHHHHHHHHhhcCCCCCcccHHHHHHHcCCChHHHHHHHHHhhcccccccceeeccc
Q psy14208 593 VTTFQMAVLFAWNERPLDRLSFENLLLATELPDPELRRTLWSLVAFPKIKRQILLYSE 650 (778)
Q Consensus 593 ~s~~Q~~ILl~FN~~~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~~k~k~~iL~~~~ 650 (778)
+|..|..||..... .+.+|..+|++.+|++...+.+.+..|... +++.+.+
T Consensus 29 lt~~q~~iL~~l~~--~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~-----Glv~r~~ 79 (145)
T 3g3z_A 29 LNYNLFAVLYTLAT--EGSRTQKHIGEKWSLPKQTVSGVCKTLAGQ-----GLIEWQE 79 (145)
T ss_dssp CCHHHHHHHHHHHH--HCSBCHHHHHHHHTCCHHHHHHHHHHHHHT-----TSEEECC
T ss_pred CCHHHHHHHHHHHH--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHC-----CCEeecc
Confidence 47789999988766 356999999999999999999999999853 2776643
No 43
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=62.15 E-value=8.4 Score=33.93 Aligned_cols=50 Identities=18% Similarity=0.135 Sum_probs=41.5
Q ss_pred ecHHHHHHHHhhcCCCCCcccHHHHHHHcCCChHHHHHHHHHhhcccccccceeecc
Q psy14208 593 VTTFQMAVLFAWNERPLDRLSFENLLLATELPDPELRRTLWSLVAFPKIKRQILLYS 649 (778)
Q Consensus 593 ~s~~Q~~ILl~FN~~~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~~k~k~~iL~~~ 649 (778)
++..|..||..+.. ++.+|..+|++.+|++...+.+.|..|... +++.+.
T Consensus 27 l~~~~~~iL~~l~~--~~~~~~~ela~~l~~s~~tvs~~l~~L~~~-----glv~~~ 76 (138)
T 3bpv_A 27 LTDAQVACLLRIHR--EPGIKQDELATFFHVDKGTIARTLRRLEES-----GFIERE 76 (138)
T ss_dssp CCHHHHHHHHHHHH--STTCBHHHHHHHHTCCHHHHHHHHHHHHHT-----TSEEEE
T ss_pred CCHHHHHHHHHHHH--cCCCCHHHHHHHHCCCHHHHHHHHHHHHHC-----CCEEee
Confidence 47788889887766 367999999999999999999999999853 266654
No 44
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=62.09 E-value=6.1 Score=33.83 Aligned_cols=45 Identities=13% Similarity=0.063 Sum_probs=35.0
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHcCCChHHHHHHHHHhhcccccccceeecc
Q psy14208 597 QMAVLFAWNERPLDRLSFENLLLATELPDPELRRTLWSLVAFPKIKRQILLYS 649 (778)
Q Consensus 597 Q~~ILl~FN~~~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~~k~k~~iL~~~ 649 (778)
+..||.++.+ +.+|+.+|++.+|++...+.++|..|...| ++...
T Consensus 27 r~~IL~~L~~---~~~s~~eLa~~lgis~stvs~~L~~L~~~G-----lV~~~ 71 (108)
T 2kko_A 27 RLQILDLLAQ---GERAVEAIATATGMNLTTASANLQALKSGG-----LVEAR 71 (108)
T ss_dssp THHHHHHHTT---CCEEHHHHHHHHTCCHHHHHHHHHHHHHHT-----SEEEE
T ss_pred HHHHHHHHHc---CCcCHHHHHHHHCcCHHHHHHHHHHHHHCC-----CeEEE
Confidence 3455555554 568999999999999999999999998543 66643
No 45
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=62.08 E-value=10 Score=32.15 Aligned_cols=47 Identities=9% Similarity=0.060 Sum_probs=36.1
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHcCCChHHHHHHHHHhhcccccccceeecc
Q psy14208 595 TFQMAVLFAWNERPLDRLSFENLLLATELPDPELRRTLWSLVAFPKIKRQILLYS 649 (778)
Q Consensus 595 ~~Q~~ILl~FN~~~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~~k~k~~iL~~~ 649 (778)
..+..||.++.+ +.+|+.+|++.+|++...+.++|..|...| ++...
T Consensus 26 ~~r~~IL~~L~~---~~~~~~ela~~l~is~stvs~~L~~L~~~G-----lv~~~ 72 (106)
T 1r1u_A 26 YNRIRIMELLSV---SEASVGHISHQLNLSQSNVSHQLKLLKSVH-----LVKAK 72 (106)
T ss_dssp HHHHHHHHHHHH---CCBCHHHHHHHHTCCHHHHHHHHHHHHHTT-----SEEEE
T ss_pred HHHHHHHHHHHh---CCCCHHHHHHHHCcCHHHHHHHHHHHHHCC-----CeEEE
Confidence 445566655544 468999999999999999999999998543 66543
No 46
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=61.66 E-value=8.5 Score=32.04 Aligned_cols=50 Identities=8% Similarity=-0.076 Sum_probs=40.9
Q ss_pred ecHHHHHHHHhhcCCCCCcccHHHH----HHHcCCChHHHHHHHHHhhcccccccceeecc
Q psy14208 593 VTTFQMAVLFAWNERPLDRLSFENL----LLATELPDPELRRTLWSLVAFPKIKRQILLYS 649 (778)
Q Consensus 593 ~s~~Q~~ILl~FN~~~~~~~t~~ei----~~~t~i~~~~l~~~L~sL~~~~k~k~~iL~~~ 649 (778)
++..|..||..+.. .+.+|..+| ++.++++...+.+.|..|... +++.+.
T Consensus 6 lt~~q~~iL~~l~~--~~~~~~~el~~~la~~l~is~~tvs~~l~~Le~~-----gli~r~ 59 (99)
T 1tbx_A 6 FFYPEAIVLAYLYD--NEGIATYDLYKKVNAEFPMSTATFYDAKKFLIQE-----GFVKER 59 (99)
T ss_dssp SBCHHHHHHHHHTT--CTTCBHHHHHHHHHTTSCCCHHHHHHHHHHHHHT-----TSEEEE
T ss_pred CCHHHHHHHHHHHH--cCCcCHHHHHHHHHHHcCCCHHHHHHHHHHHHHC-----CCEEEE
Confidence 46778889888876 467999999 889999999999999999853 266654
No 47
>2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A
Probab=61.25 E-value=9.3 Score=37.93 Aligned_cols=58 Identities=14% Similarity=0.162 Sum_probs=44.0
Q ss_pred HHHHHhhcCCCCCcccHHHHHHHcCCChHHHHHHHHHhhcccccccceeecccCCCCCCCCCCCCeEEEcccc
Q psy14208 598 MAVLFAWNERPLDRLSFENLLLATELPDPELRRTLWSLVAFPKIKRQILLYSEEVQSPKDFTEHTSFWINQEF 670 (778)
Q Consensus 598 ~~ILl~FN~~~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~~k~k~~iL~~~~~~~~~~~~~~~~~f~lN~~F 670 (778)
..||.+|.+. ...+|+.||++.+|++...+.+.|..|...+ ++.+.+ .+..|.+...+
T Consensus 9 l~iL~~l~~~-~~~~s~~ela~~~gl~~stv~r~l~~L~~~G-----~v~~~~---------~~~~Y~lg~~~ 66 (241)
T 2xrn_A 9 ASIMRALGSH-PHGLSLAAIAQLVGLPRSTVQRIINALEEEF-----LVEALG---------PAGGFRLGPAL 66 (241)
T ss_dssp HHHHHHHHTC-TTCEEHHHHHHHTTSCHHHHHHHHHHHHTTT-----SEEECG---------GGCEEEECSHH
T ss_pred HHHHHHHHhC-CCCCCHHHHHHHHCcCHHHHHHHHHHHHHCC-----CEEEeC---------CCCeEEECHHH
Confidence 3467777663 2479999999999999999999999998643 777654 23567776654
No 48
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=61.18 E-value=9.6 Score=30.59 Aligned_cols=59 Identities=14% Similarity=0.143 Sum_probs=43.1
Q ss_pred hhhhhhhccC--CCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHhhhhcccccCCCCCCceEe
Q psy14208 715 EAIIKILKMR--KRISNAQLQTELVDILKNMFLPSKKMIKEQIEWLIEQKYMRRDDDDINVFVY 776 (778)
Q Consensus 715 A~IVRiMK~~--k~l~~~~L~~~v~~~l~~~F~p~~~~iK~~Ie~LIereyl~Rd~~d~~~y~Y 776 (778)
.+|..++... +.++..+|...+.+.. ...+...|-+.++.|.+.|+|.|...+.+...|
T Consensus 20 ~~IL~~l~~~~~~~~s~~el~~~l~~~~---~~is~~TVyR~L~~L~~~Glv~~~~~~~~~~~y 80 (83)
T 2fu4_A 20 LKILEVLQEPDNHHVSAEDLYKRLIDMG---EEIGLATVYRVLNQFDDAGIVTRHNFEGGKSVF 80 (83)
T ss_dssp HHHHHHHTSGGGSSBCHHHHHHHHHHTT---CCCCHHHHHHHHHHHHHHTSEEEEECGGGCEEE
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHhC---CCCCHhhHHHHHHHHHHCCCeEEEeeCCCceEe
Confidence 3456666554 6899999888775532 246788999999999999999997654344444
No 49
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=60.72 E-value=9.4 Score=34.19 Aligned_cols=51 Identities=10% Similarity=0.061 Sum_probs=41.8
Q ss_pred ecHHHHHHHHhhcCCCCCcccHHHHHHHcCCChHHHHHHHHHhhcccccccceeeccc
Q psy14208 593 VTTFQMAVLFAWNERPLDRLSFENLLLATELPDPELRRTLWSLVAFPKIKRQILLYSE 650 (778)
Q Consensus 593 ~s~~Q~~ILl~FN~~~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~~k~k~~iL~~~~ 650 (778)
+|..|..||..+.. .+.+|..+|++.+|++...+.+.+..|... +++.+.+
T Consensus 38 l~~~~~~iL~~l~~--~~~~t~~ela~~l~~~~~tvs~~l~~Le~~-----Glv~r~~ 88 (148)
T 3nrv_A 38 IGMTEWRIISVLSS--ASDCSVQKISDILGLDKAAVSRTVKKLEEK-----KYIEVNG 88 (148)
T ss_dssp CCHHHHHHHHHHHH--SSSBCHHHHHHHHTCCHHHHHHHHHHHHHT-----TSEEC--
T ss_pred CCHHHHHHHHHHHc--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHC-----CCEEeec
Confidence 57889999988876 368999999999999999999999999853 2776553
No 50
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=60.62 E-value=8.1 Score=33.95 Aligned_cols=53 Identities=11% Similarity=0.111 Sum_probs=41.9
Q ss_pred ecHHHHHHHHhhcCCCCCcccHHHHHHHcCCChHHHHHHHHHhhcccccccceeeccc
Q psy14208 593 VTTFQMAVLFAWNERPLDRLSFENLLLATELPDPELRRTLWSLVAFPKIKRQILLYSE 650 (778)
Q Consensus 593 ~s~~Q~~ILl~FN~~~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~~k~k~~iL~~~~ 650 (778)
+|..|..||......+.+.+|..+|++.++++...+.+.|..|... +++.+.+
T Consensus 35 lt~~q~~vL~~l~~~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~-----Glv~r~~ 87 (127)
T 2frh_A 35 ISFEEFAVLTYISENKEKEYYLKDIINHLNYKQPQVVKAVKILSQE-----DYFDKKR 87 (127)
T ss_dssp CCHHHHHHHHHHHHTCCSEEEHHHHHHHSSSHHHHHHHHHHHHHHT-----TSSCCBC
T ss_pred CCHHHHHHHHHHHhccCCCcCHHHHHHHHCCCHHHHHHHHHHHHHC-----CCEEecC
Confidence 4777888887765522367999999999999999999999999853 2776653
No 51
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=60.52 E-value=10 Score=33.52 Aligned_cols=53 Identities=11% Similarity=0.026 Sum_probs=41.9
Q ss_pred ecHHHHHHHHhhcCCCCCcccHHHHHHHcCCChHHHHHHHHHhhcccccccceeeccc
Q psy14208 593 VTTFQMAVLFAWNERPLDRLSFENLLLATELPDPELRRTLWSLVAFPKIKRQILLYSE 650 (778)
Q Consensus 593 ~s~~Q~~ILl~FN~~~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~~k~k~~iL~~~~ 650 (778)
+|..|..||..+...+...+|..+|++.+|++...+.+.+..|... +++.+.+
T Consensus 32 lt~~~~~iL~~l~~~~~~~~~~~ela~~l~~~~~tvs~~l~~Le~~-----Gli~r~~ 84 (141)
T 3bro_A 32 LTGTQMTIIDYLSRNKNKEVLQRDLESEFSIKSSTATVLLQRMEIK-----KLLYRKV 84 (141)
T ss_dssp CCHHHHHHHHHHHHTTTSCCBHHHHHHHHTCCHHHHHHHHHHHHHT-----TSEEEEE
T ss_pred CCHHHHHHHHHHHHCCCCCcCHHHHHHHHCCCcchHHHHHHHHHHC-----CCEEeeC
Confidence 4677888888776632237999999999999999999999999853 2676543
No 52
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=60.21 E-value=6.8 Score=34.97 Aligned_cols=51 Identities=22% Similarity=0.199 Sum_probs=42.3
Q ss_pred ecHHHHHHHHhhcCCCCCcccHHHHHHHcCCChHHHHHHHHHhhcccccccceeeccc
Q psy14208 593 VTTFQMAVLFAWNERPLDRLSFENLLLATELPDPELRRTLWSLVAFPKIKRQILLYSE 650 (778)
Q Consensus 593 ~s~~Q~~ILl~FN~~~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~~k~k~~iL~~~~ 650 (778)
+|..|..||..... .+++|..+|++.+|++...+.+.+..|... +++.+.+
T Consensus 35 lt~~~~~iL~~l~~--~~~~t~~eLa~~l~~~~~~vs~~l~~L~~~-----Glv~r~~ 85 (143)
T 3oop_A 35 VTPEQWSVLEGIEA--NEPISQKEIALWTKKDTPTVNRIVDVLLRK-----ELIVREI 85 (143)
T ss_dssp SCHHHHHHHHHHHH--HSSEEHHHHHHHHTCCHHHHHHHHHHHHHT-----TSEEEEC
T ss_pred CCHHHHHHHHHHHH--cCCcCHHHHHHHHCCCHhhHHHHHHHHHHC-----CCeeccC
Confidence 47889999887766 368999999999999999999999999853 2776653
No 53
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=59.92 E-value=8 Score=32.21 Aligned_cols=56 Identities=13% Similarity=0.196 Sum_probs=40.0
Q ss_pred hhhhhhccCCCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHhhhhcccccCCCCCCceE
Q psy14208 716 AIIKILKMRKRISNAQLQTELVDILKNMFLPSKKMIKEQIEWLIEQKYMRRDDDDINVFV 775 (778)
Q Consensus 716 ~IVRiMK~~k~l~~~~L~~~v~~~l~~~F~p~~~~iK~~Ie~LIereyl~Rd~~d~~~y~ 775 (778)
.|...+...+.++..+|...+. ..+..+...+-+.|..|.++|||+|..+.+..+.
T Consensus 12 ~iL~~l~~~~~~~~~el~~~la----~~l~is~~tvs~~l~~Le~~gli~r~~~~r~~~~ 67 (99)
T 1tbx_A 12 IVLAYLYDNEGIATYDLYKKVN----AEFPMSTATFYDAKKFLIQEGFVKERQERGEKRL 67 (99)
T ss_dssp HHHHHHTTCTTCBHHHHHHHHH----TTSCCCHHHHHHHHHHHHHTTSEEEEEETTEEEE
T ss_pred HHHHHHHHcCCcCHHHHHHHHH----HHcCCCHHHHHHHHHHHHHCCCEEEEecCCceEE
Confidence 3444444567788777765543 3567889999999999999999999765444433
No 54
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=59.53 E-value=8.2 Score=36.17 Aligned_cols=63 Identities=11% Similarity=0.183 Sum_probs=39.4
Q ss_pred ccCCceEEEEEEecCeeEEEEecHHHHHHHHhhcCCCCCcccHHHHHHHcCCChHHHHHHHHHhhccc
Q psy14208 572 YHHMSNGTITFSNEVGKYDLDVTTFQMAVLFAWNERPLDRLSFENLLLATELPDPELRRTLWSLVAFP 639 (778)
Q Consensus 572 ~~~l~~~~i~~~~~~~~~~l~~s~~Q~~ILl~FN~~~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~~ 639 (778)
.|+.+++.+..... -...++..+..||.++.. +..+|+.+|++.+|++...+.+.|..|...|
T Consensus 7 ~~~~~~~~~~~~~~---m~~~ld~~d~~IL~~L~~--~~~~s~~eLA~~lglS~~tv~~rl~~L~~~G 69 (171)
T 2e1c_A 7 HHHHSSGLVPRGSH---MRVPLDEIDKKIIKILQN--DGKAPLREISKITGLAESTIHERIRKLRESG 69 (171)
T ss_dssp --------------------CCCHHHHHHHHHHHH--CTTCCHHHHHHHHTSCHHHHHHHHHHHHHTT
T ss_pred cccccccccccccc---cccCCCHHHHHHHHHHHH--cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 34556676654321 223467788888888776 3679999999999999999999999998643
No 55
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=59.28 E-value=8.5 Score=34.81 Aligned_cols=53 Identities=11% Similarity=0.009 Sum_probs=40.2
Q ss_pred ecHHHHHHHHhhcCCCCCcccHHHHHHHcCCChHHHHHHHHHhhcccccccceeeccc
Q psy14208 593 VTTFQMAVLFAWNERPLDRLSFENLLLATELPDPELRRTLWSLVAFPKIKRQILLYSE 650 (778)
Q Consensus 593 ~s~~Q~~ILl~FN~~~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~~k~k~~iL~~~~ 650 (778)
+|..|..||..+...+++.+|..+|++.++++...+.+.+..|... +++.+.+
T Consensus 33 Lt~~q~~vL~~L~~~~~~~~t~~eLa~~l~~~~~tvs~~v~~Le~~-----Glv~r~~ 85 (147)
T 4b8x_A 33 LTFARYEALVLLTFSKSGELPMSKIGERLMVHPTSVTNTVDRLVRS-----GLVAKRP 85 (147)
T ss_dssp CCHHHHHHHHHHHTSGGGEEEHHHHHHHHTCCHHHHHHHHHHHHHT-----TSEEEEE
T ss_pred CCHHHHHHHHHHHHCCCCCcCHHHHHHHHCCCHHHHHHHHHHHHhC-----CCEEEee
Confidence 3666777776553211467999999999999999999999999853 3777654
No 56
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=59.22 E-value=8.1 Score=32.41 Aligned_cols=51 Identities=20% Similarity=0.239 Sum_probs=37.7
Q ss_pred cHHHHHHHHhhcCCCCCcccHHHHHHHcCCChHHHHHHHHHhhcccccccceeeccc
Q psy14208 594 TTFQMAVLFAWNERPLDRLSFENLLLATELPDPELRRTLWSLVAFPKIKRQILLYSE 650 (778)
Q Consensus 594 s~~Q~~ILl~FN~~~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~~k~k~~iL~~~~ 650 (778)
+..|..+|+.+-.. ++.+|..+|++.+|++...+.++|..|...| ++...+
T Consensus 20 ~~~~~~~l~~l~~~-~~~~t~~ela~~l~is~~tv~~~l~~L~~~g-----~v~~~~ 70 (109)
T 2d1h_A 20 TDTDVAVLLKMVEI-EKPITSEELADIFKLSKTTVENSLKKLIELG-----LVVRTK 70 (109)
T ss_dssp CHHHHHHHHHHHHH-CSCEEHHHHHHHHTCCHHHHHHHHHHHHHTT-----SEEEEE
T ss_pred CHHHHHHHHHHHHc-CCCCCHHHHHHHHCcCHHHHHHHHHHHHHCC-----CeEeec
Confidence 55566666544221 2579999999999999999999999998633 666543
No 57
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=59.11 E-value=22 Score=31.20 Aligned_cols=35 Identities=11% Similarity=0.094 Sum_probs=30.1
Q ss_pred CcccHHHHHHHcCCChHHHHHHHHHhhcccccccceeecc
Q psy14208 610 DRLSFENLLLATELPDPELRRTLWSLVAFPKIKRQILLYS 649 (778)
Q Consensus 610 ~~~t~~ei~~~t~i~~~~l~~~L~sL~~~~k~k~~iL~~~ 649 (778)
..+|..+|++.+|+|...+.+.|..|...| ++...
T Consensus 25 ~~~s~~ela~~~~i~~~~v~~il~~L~~~G-----lv~~~ 59 (129)
T 2y75_A 25 GPTSLKSIAQTNNLSEHYLEQLVSPLRNAG-----LVKSI 59 (129)
T ss_dssp CCBCHHHHHHHTTSCHHHHHHHHHHHHHTT-----SEEEC
T ss_pred CcCCHHHHHHHHCcCHHHHHHHHHHHHHCC-----ceEec
Confidence 579999999999999999999999998543 76654
No 58
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=58.56 E-value=15 Score=29.20 Aligned_cols=35 Identities=14% Similarity=0.192 Sum_probs=29.3
Q ss_pred HHhhcCCCCCcccHHHHHHHcCCChHHHHHHHHHhhc
Q psy14208 601 LFAWNERPLDRLSFENLLLATELPDPELRRTLWSLVA 637 (778)
Q Consensus 601 Ll~FN~~~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~ 637 (778)
+..+.+ ++..|..+|+.++|++...+.++|-+|..
T Consensus 21 i~~L~~--~~~~Ta~~IAkkLg~sK~~vNr~LY~L~k 55 (75)
T 1sfu_A 21 VLSLNT--NDYTTAISLSNRLKINKKKINQQLYKLQK 55 (75)
T ss_dssp HHTSCT--TCEECHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHhCCC--CcchHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 344554 35599999999999999999999999985
No 59
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=58.53 E-value=8.5 Score=34.68 Aligned_cols=51 Identities=16% Similarity=0.072 Sum_probs=41.5
Q ss_pred ecHHHHHHHHhhcCCCCCcccHHHHHHHcCCChHHHHHHHHHhhcccccccceeeccc
Q psy14208 593 VTTFQMAVLFAWNERPLDRLSFENLLLATELPDPELRRTLWSLVAFPKIKRQILLYSE 650 (778)
Q Consensus 593 ~s~~Q~~ILl~FN~~~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~~k~k~~iL~~~~ 650 (778)
+|..|..||..... ++++|..+|++.++++...+.+.+..|... +++.+.+
T Consensus 39 lt~~q~~iL~~l~~--~~~~~~~eLa~~l~~~~~~vs~~l~~L~~~-----Glv~r~~ 89 (149)
T 4hbl_A 39 ITYSQYLVMLTLWE--ENPQTLNSIGRHLDLSSNTLTPMLKRLEQS-----GWVKRER 89 (149)
T ss_dssp CCHHHHHHHHHHHH--SSSEEHHHHHHHHTCCHHHHHHHHHHHHHH-----TSEEC--
T ss_pred CCHHHHHHHHHHHH--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHC-----CCEeeCC
Confidence 47789999988766 368999999999999999999999999853 3777653
No 60
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=58.45 E-value=8.6 Score=33.85 Aligned_cols=50 Identities=8% Similarity=0.114 Sum_probs=41.4
Q ss_pred ecHHHHHHHHhhcCCCCCcccHHHHHHHcCCChHHHHHHHHHhhcccccccceeecc
Q psy14208 593 VTTFQMAVLFAWNERPLDRLSFENLLLATELPDPELRRTLWSLVAFPKIKRQILLYS 649 (778)
Q Consensus 593 ~s~~Q~~ILl~FN~~~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~~k~k~~iL~~~ 649 (778)
++..|..||..+.. ++.+|..+|++.+|++...+.+.|..|...| ++.+.
T Consensus 31 l~~~~~~iL~~l~~--~~~~~~~ela~~l~~~~~tvs~~l~~L~~~g-----li~r~ 80 (139)
T 3bja_A 31 ISYVQFGVIQVLAK--SGKVSMSKLIENMGCVPSNMTTMIQRMKRDG-----YVMTE 80 (139)
T ss_dssp CCHHHHHHHHHHHH--SCSEEHHHHHHHCSSCCTTHHHHHHHHHHTT-----SEEEE
T ss_pred CCHHHHHHHHHHHH--cCCcCHHHHHHHHCCChhHHHHHHHHHHHCC-----Ceeec
Confidence 47789889887766 3679999999999999999999999998532 66654
No 61
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=58.41 E-value=13 Score=34.43 Aligned_cols=47 Identities=13% Similarity=0.055 Sum_probs=35.5
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHcCCChHHHHHHHHHhhcccccccceeecc
Q psy14208 596 FQMAVLFAWNERPLDRLSFENLLLATELPDPELRRTLWSLVAFPKIKRQILLYS 649 (778)
Q Consensus 596 ~Q~~ILl~FN~~~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~~k~k~~iL~~~ 649 (778)
+.+.+.|.-+. ...+|.++|++.+++|...+.+.|..|...| ++...
T Consensus 15 lr~l~~La~~~--~~~~s~~~IA~~~~is~~~l~kil~~L~~aG-----lv~s~ 61 (162)
T 3k69_A 15 VHSILYLDAHR--DSKVASRELAQSLHLNPVMIRNILSVLHKHG-----YLTGT 61 (162)
T ss_dssp HHHHHHHHTTT--TSCBCHHHHHHHHTSCGGGTHHHHHHHHHTT-----SSEEE
T ss_pred HHHHHHHHhCC--CCCcCHHHHHHHHCcCHHHHHHHHHHHHHCC-----CEEee
Confidence 34444455443 4679999999999999999999999998543 66544
No 62
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=58.39 E-value=9.2 Score=33.72 Aligned_cols=50 Identities=18% Similarity=0.081 Sum_probs=41.0
Q ss_pred ecHHHHHHHHhhcCCCCCcccHHHHHHHcCCChHHHHHHHHHhhcccccccceeecc
Q psy14208 593 VTTFQMAVLFAWNERPLDRLSFENLLLATELPDPELRRTLWSLVAFPKIKRQILLYS 649 (778)
Q Consensus 593 ~s~~Q~~ILl~FN~~~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~~k~k~~iL~~~ 649 (778)
++..|..||..+.. ++.+|..+|++.+|++...+.+.|..|...| ++.+.
T Consensus 36 l~~~~~~iL~~l~~--~~~~t~~ela~~l~~~~~tvs~~l~~L~~~g-----lv~r~ 85 (140)
T 2nnn_A 36 LTPTQWAALVRLGE--TGPCPQNQLGRLTAMDAATIKGVVERLDKRG-----LIQRS 85 (140)
T ss_dssp CCHHHHHHHHHHHH--HSSBCHHHHHHHTTCCHHHHHHHHHHHHHTT-----CEEEE
T ss_pred CCHHHHHHHHHHHH--cCCCCHHHHHHHHCCCHHHHHHHHHHHHHCC-----CEEee
Confidence 46778888887765 3579999999999999999999999998532 66654
No 63
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=58.34 E-value=9.7 Score=33.87 Aligned_cols=51 Identities=18% Similarity=0.156 Sum_probs=40.7
Q ss_pred ecHHHHHHHHhh-cCCCCCcccHHHHHHHcCCChHHHHHHHHHhhcccccccceeeccc
Q psy14208 593 VTTFQMAVLFAW-NERPLDRLSFENLLLATELPDPELRRTLWSLVAFPKIKRQILLYSE 650 (778)
Q Consensus 593 ~s~~Q~~ILl~F-N~~~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~~k~k~~iL~~~~ 650 (778)
++..|..||..+ .. .+.+|..+|++.+|++...+.+.+..|... +++.+.+
T Consensus 35 l~~~~~~iL~~l~~~--~~~~t~~~la~~l~~s~~~vs~~l~~L~~~-----glv~r~~ 86 (146)
T 2fbh_A 35 LSQARWLVLLHLARH--RDSPTQRELAQSVGVEGPTLARLLDGLESQ-----GLVRRLA 86 (146)
T ss_dssp CTTTHHHHHHHHHHC--SSCCBHHHHHHHHTCCHHHHHHHHHHHHHT-----TSEEEEC
T ss_pred CCHHHHHHHHHHHHc--CCCCCHHHHHHHhCCChhhHHHHHHHHHHC-----CCeeecC
Confidence 366688888777 54 367999999999999999999999999853 2666543
No 64
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=58.17 E-value=8.5 Score=30.96 Aligned_cols=37 Identities=16% Similarity=0.146 Sum_probs=31.7
Q ss_pred HHHhhcCCCCCcccHHHHHHHcCCChHHHHHHHHHhhcc
Q psy14208 600 VLFAWNERPLDRLSFENLLLATELPDPELRRTLWSLVAF 638 (778)
Q Consensus 600 ILl~FN~~~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~ 638 (778)
|+.+.++ ++.++++||++.+++++..+.+-|..|...
T Consensus 7 Il~~L~~--~g~vsv~eLa~~l~VS~~TIRrdL~~Le~~ 43 (78)
T 1xn7_A 7 VRDLLAL--RGRMEAAQISQTLNTPQPMINAMLQQLESM 43 (78)
T ss_dssp HHHHHHH--SCSBCHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHH--cCCCcHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 4555666 478999999999999999999999999863
No 65
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=57.99 E-value=10 Score=34.01 Aligned_cols=55 Identities=13% Similarity=0.096 Sum_probs=42.2
Q ss_pred EEEecHHHHHHHHh---hcCCCCCcccHHHHHHHcCCChHHHHHHHHHhhcccccccceeecc
Q psy14208 590 DLDVTTFQMAVLFA---WNERPLDRLSFENLLLATELPDPELRRTLWSLVAFPKIKRQILLYS 649 (778)
Q Consensus 590 ~l~~s~~Q~~ILl~---FN~~~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~~k~k~~iL~~~ 649 (778)
+|-+|.-++.+|+. ||+......|.++|++.+|++..++.+.|..|... ++|...
T Consensus 27 ~LgLs~~E~~lLl~L~~~~~~g~~~ps~~~LA~~~~~s~~~v~~~L~~L~~K-----GlI~i~ 84 (135)
T 2v79_A 27 QLGLNETELILLLKIKMHLEKGSYFPTPNQLQEGMSISVEECTNRLRMFIQK-----GFLFIE 84 (135)
T ss_dssp HHTCCHHHHHHHHHHHHHHTTTCCSCCHHHHHTTSSSCHHHHHHHHHHHHHH-----TSCEEE
T ss_pred HhCCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHC-----CCEEEE
Confidence 45567788887764 45533456899999999999999999999999962 266653
No 66
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=57.93 E-value=8.8 Score=35.17 Aligned_cols=51 Identities=16% Similarity=0.058 Sum_probs=42.3
Q ss_pred ecHHHHHHHHhhcCCCCCcccHHHHHHHcCCChHHHHHHHHHhhcccccccceeeccc
Q psy14208 593 VTTFQMAVLFAWNERPLDRLSFENLLLATELPDPELRRTLWSLVAFPKIKRQILLYSE 650 (778)
Q Consensus 593 ~s~~Q~~ILl~FN~~~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~~k~k~~iL~~~~ 650 (778)
+|..|..||..... ++.+|..+|++.+|++...+.+.+..|... +++.+.+
T Consensus 44 lt~~q~~iL~~l~~--~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~-----Glv~r~~ 94 (162)
T 3k0l_A 44 ISLPQFTALSVLAA--KPNLSNAKLAERSFIKPQSANKILQDLLAN-----GWIEKAP 94 (162)
T ss_dssp CCHHHHHHHHHHHH--CTTCCHHHHHHHHTSCGGGHHHHHHHHHHT-----TSEEEEE
T ss_pred CCHHHHHHHHHHHH--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHC-----cCeEecC
Confidence 46789999988776 367999999999999999999999999853 2777654
No 67
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=57.84 E-value=10 Score=34.22 Aligned_cols=49 Identities=12% Similarity=0.138 Sum_probs=41.3
Q ss_pred ecHHHHHHHHhhcCCCCCcccHHHHHHHcCCChHHHHHHHHHhhcccccccceeec
Q psy14208 593 VTTFQMAVLFAWNERPLDRLSFENLLLATELPDPELRRTLWSLVAFPKIKRQILLY 648 (778)
Q Consensus 593 ~s~~Q~~ILl~FN~~~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~~k~k~~iL~~ 648 (778)
+|..|..||..+.. .+.+|..+|++.++++...+.+.+..|... +++.+
T Consensus 39 lt~~~~~iL~~l~~--~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~-----Glv~r 87 (154)
T 2qww_A 39 LTIQQLAMINVIYS--TPGISVADLTKRLIITGSSAAANVDGLISL-----GLVVK 87 (154)
T ss_dssp CCHHHHHHHHHHHH--STTEEHHHHHHHHTCCHHHHHHHHHHHHHT-----TSEEE
T ss_pred CCHHHHHHHHHHHH--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHC-----CCEEe
Confidence 47889999988876 367999999999999999999999999853 26765
No 68
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=57.78 E-value=4.5 Score=33.35 Aligned_cols=45 Identities=16% Similarity=0.238 Sum_probs=36.8
Q ss_pred hhhhhhccCCCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHhhhhcccccCC
Q psy14208 716 AIIKILKMRKRISNAQLQTELVDILKNMFLPSKKMIKEQIEWLIEQKYMRRDD 768 (778)
Q Consensus 716 ~IVRiMK~~k~l~~~~L~~~v~~~l~~~F~p~~~~iK~~Ie~LIereyl~Rd~ 768 (778)
.|...++.++.++.+||. ..|..+...|.+=|+.|.++|+|+|..
T Consensus 6 ~Il~~L~~~g~vsv~eLA--------~~l~VS~~TIRrDL~~Le~~G~l~R~~ 50 (87)
T 2k02_A 6 EVRDMLALQGRMEAKQLS--------ARLQTPQPLIDAMLERMEAMGKVVRIS 50 (87)
T ss_dssp HHHHHHHHSCSEEHHHHH--------HHTTCCHHHHHHHHHHHHTTCCSEEEE
T ss_pred HHHHHHHHcCCCcHHHHH--------HHHCcCHHHHHHHHHHHHHCCCEEEEe
Confidence 466677777888777654 357899999999999999999999973
No 69
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=57.38 E-value=11 Score=34.24 Aligned_cols=50 Identities=10% Similarity=-0.001 Sum_probs=41.2
Q ss_pred ecHHHHHHHHhhcCCCCCcccHHHHHHHcCCChHHHHHHHHHhhcccccccceeecc
Q psy14208 593 VTTFQMAVLFAWNERPLDRLSFENLLLATELPDPELRRTLWSLVAFPKIKRQILLYS 649 (778)
Q Consensus 593 ~s~~Q~~ILl~FN~~~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~~k~k~~iL~~~ 649 (778)
++..|..||..+.. ++.+|..+|++.+|++...+.+.|..|... +++.+.
T Consensus 47 lt~~~~~iL~~l~~--~~~~t~~ela~~l~is~~tvs~~l~~Le~~-----glv~r~ 96 (162)
T 2fa5_A 47 MAIPEWRVITILAL--YPGSSASEVSDRTAMDKVAVSRAVARLLER-----GFIRRE 96 (162)
T ss_dssp CCHHHHHHHHHHHH--STTCCHHHHHHHHTCCHHHHHHHHHHHHHT-----TSEEC-
T ss_pred CCHHHHHHHHHHHh--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHC-----CCEeee
Confidence 47789999888776 367999999999999999999999999853 277654
No 70
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=57.37 E-value=9.8 Score=31.32 Aligned_cols=38 Identities=18% Similarity=0.130 Sum_probs=32.1
Q ss_pred HHHhhcCCCCCcccHHHHHHHcCCChHHHHHHHHHhhccc
Q psy14208 600 VLFAWNERPLDRLSFENLLLATELPDPELRRTLWSLVAFP 639 (778)
Q Consensus 600 ILl~FN~~~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~~ 639 (778)
|+.+.++ .+.+++++|++.+++++..+.+-|.-|...|
T Consensus 7 Il~~L~~--~g~vsv~eLA~~l~VS~~TIRrDL~~Le~~G 44 (87)
T 2k02_A 7 VRDMLAL--QGRMEAKQLSARLQTPQPLIDAMLERMEAMG 44 (87)
T ss_dssp HHHHHHH--SCSEEHHHHHHHTTCCHHHHHHHHHHHHTTC
T ss_pred HHHHHHH--cCCCcHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 4555566 4789999999999999999999999998643
No 71
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=57.17 E-value=11 Score=33.96 Aligned_cols=51 Identities=18% Similarity=0.041 Sum_probs=42.0
Q ss_pred ecHHHHHHHHhhcCCCCCcccHHHHHHHcCCChHHHHHHHHHhhcccccccceeeccc
Q psy14208 593 VTTFQMAVLFAWNERPLDRLSFENLLLATELPDPELRRTLWSLVAFPKIKRQILLYSE 650 (778)
Q Consensus 593 ~s~~Q~~ILl~FN~~~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~~k~k~~iL~~~~ 650 (778)
++..|..||..+.. .+.+|..+|++.+|++...+.+.|..|... +++.+.+
T Consensus 38 lt~~~~~iL~~l~~--~~~~t~~ela~~l~~~~~~vs~~l~~Le~~-----Glv~r~~ 88 (152)
T 3bj6_A 38 VTVGQRAILEGLSL--TPGATAPQLGAALQMKRQYISRILQEVQRA-----GLIERRT 88 (152)
T ss_dssp CCHHHHHHHHHHHH--STTEEHHHHHHHHTCCHHHHHHHHHHHHHT-----TSEEEEC
T ss_pred CCHHHHHHHHHHHh--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHC-----CCeeecC
Confidence 47789999988866 367999999999999999999999999853 2666543
No 72
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=57.07 E-value=14 Score=32.04 Aligned_cols=48 Identities=13% Similarity=0.067 Sum_probs=37.4
Q ss_pred cHHHHHHHHhhcCCCCCcccHHHHHHHcCCChHHHHHHHHHhhcccccccceeecc
Q psy14208 594 TTFQMAVLFAWNERPLDRLSFENLLLATELPDPELRRTLWSLVAFPKIKRQILLYS 649 (778)
Q Consensus 594 s~~Q~~ILl~FN~~~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~~k~k~~iL~~~ 649 (778)
+..+..||.++.+ +..++.+|++.+|++...+.++|..|...| ++...
T Consensus 20 ~~~r~~IL~~L~~---~~~~~~eLa~~lgis~stvs~~L~~L~~~G-----lV~~~ 67 (118)
T 2jsc_A 20 DPTRCRILVALLD---GVCYPGQLAAHLGLTRSNVSNHLSCLRGCG-----LVVAT 67 (118)
T ss_dssp SHHHHHHHHHHHT---TCCSTTTHHHHHSSCHHHHHHHHHHHTTTT-----SEEEE
T ss_pred CHHHHHHHHHHHc---CCCCHHHHHHHHCcCHHHHHHHHHHHHHCC-----ceEEE
Confidence 4556667766654 458999999999999999999999998643 66644
No 73
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=56.73 E-value=11 Score=33.98 Aligned_cols=50 Identities=22% Similarity=0.096 Sum_probs=41.4
Q ss_pred ecHHHHHHHHhhcCCCCCcccHHHHHHHcCCChHHHHHHHHHhhcccccccceeecc
Q psy14208 593 VTTFQMAVLFAWNERPLDRLSFENLLLATELPDPELRRTLWSLVAFPKIKRQILLYS 649 (778)
Q Consensus 593 ~s~~Q~~ILl~FN~~~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~~k~k~~iL~~~ 649 (778)
++..|..||..... ++.+|..+|++.++++...+.+.|..|... +++.+.
T Consensus 45 l~~~~~~iL~~l~~--~~~~t~~ela~~l~~s~~tvs~~l~~Le~~-----glv~r~ 94 (153)
T 2pex_A 45 LTYPQYLVMLVLWE--TDERSVSEIGERLYLDSATLTPLLKRLQAA-----GLVTRT 94 (153)
T ss_dssp CCHHHHHHHHHHHH--SCSEEHHHHHHHHTCCHHHHHHHHHHHHHT-----TSEEEE
T ss_pred CCHHHHHHHHHHHh--CCCcCHHHHHHHhCCCcccHHHHHHHHHHC-----CCEeec
Confidence 47789888887766 367999999999999999999999999853 266654
No 74
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=56.67 E-value=12 Score=32.45 Aligned_cols=47 Identities=13% Similarity=0.055 Sum_probs=36.5
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHcCCChHHHHHHHHHhhcccccccceeecc
Q psy14208 595 TFQMAVLFAWNERPLDRLSFENLLLATELPDPELRRTLWSLVAFPKIKRQILLYS 649 (778)
Q Consensus 595 ~~Q~~ILl~FN~~~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~~k~k~~iL~~~ 649 (778)
.....||.++.+ +.+|+.+|++.+|++...+.++|..|...| ++...
T Consensus 18 ~~R~~Il~~L~~---~~~~~~eLa~~l~is~~tvs~hL~~L~~~G-----lV~~~ 64 (118)
T 3f6o_A 18 PTRRAVLGRLSR---GPATVSELAKPFDMALPSFMKHIHFLEDSG-----WIRTH 64 (118)
T ss_dssp HHHHHHHHHHHT---CCEEHHHHHTTCCSCHHHHHHHHHHHHHTT-----SEEEE
T ss_pred HHHHHHHHHHHh---CCCCHHHHHHHhCcCHHHHHHHHHHHHHCC-----CeEEE
Confidence 344556655554 568999999999999999999999998643 66644
No 75
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=56.41 E-value=9.3 Score=36.21 Aligned_cols=53 Identities=11% Similarity=0.086 Sum_probs=42.9
Q ss_pred ecHHHHHHHHhhcCCCCCcccHHHHHHHcCCChHHHHHHHHHhhcccccccceeeccc
Q psy14208 593 VTTFQMAVLFAWNERPLDRLSFENLLLATELPDPELRRTLWSLVAFPKIKRQILLYSE 650 (778)
Q Consensus 593 ~s~~Q~~ILl~FN~~~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~~k~k~~iL~~~~ 650 (778)
+|..|..||......+.+++|..+|++.+|++...+.+.+..|... +++.+.+
T Consensus 39 lt~~q~~vL~~L~~~~~~~~t~~eLa~~l~is~~tvs~~l~~Le~~-----GlV~r~~ 91 (189)
T 3nqo_A 39 LTSRQYMTILSILHLPEEETTLNNIARKMGTSKQNINRLVANLEKN-----GYVDVIP 91 (189)
T ss_dssp SCHHHHHHHHHHHHSCGGGCCHHHHHHHHTSCHHHHHHHHHHHHHT-----TSEEEEE
T ss_pred CCHHHHHHHHHHHhccCCCcCHHHHHHHHCCCHHHHHHHHHHHHHC-----CCEEecc
Confidence 5788999988776422367999999999999999999999999853 2777654
No 76
>2l02_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=56.40 E-value=19 Score=29.03 Aligned_cols=40 Identities=25% Similarity=0.130 Sum_probs=32.6
Q ss_pred HHHHhhcCCCCCcccHHHHHHHcCCChHHHHHHHHHhhcccc
Q psy14208 599 AVLFAWNERPLDRLSFENLLLATELPDPELRRTLWSLVAFPK 640 (778)
Q Consensus 599 ~ILl~FN~~~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~~k 640 (778)
.|--++|+ .+.+|+++|++.||+++.++..++--|+.-+|
T Consensus 12 ~VW~~L~~--~~~~s~~el~k~t~l~d~el~lAIGWLaREdK 51 (82)
T 2l02_A 12 KVWHALNE--ADGISIPELARKVNLSVESTALAVGWLARENK 51 (82)
T ss_dssp HHHHHHHH--CCSBCHHHHHHHHTCCHHHHHHHHHHHHTTTS
T ss_pred HHHHHHhc--cCCCCHHHHHHHhCCCHHHHHHHHHHHhccCc
Confidence 34456676 36899999999999999999999999985443
No 77
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=56.11 E-value=9.8 Score=33.81 Aligned_cols=50 Identities=14% Similarity=-0.023 Sum_probs=41.2
Q ss_pred ecHHHHHHHHhhcCCCCCcccHHHHHHHcCCChHHHHHHHHHhhcccccccceeecc
Q psy14208 593 VTTFQMAVLFAWNERPLDRLSFENLLLATELPDPELRRTLWSLVAFPKIKRQILLYS 649 (778)
Q Consensus 593 ~s~~Q~~ILl~FN~~~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~~k~k~~iL~~~ 649 (778)
++..|+.||..+.. ++.+|..+|++.+|++...+.+.|..|... +++.+.
T Consensus 31 l~~~~~~iL~~l~~--~~~~~~~~la~~l~~s~~tvs~~l~~L~~~-----glv~r~ 80 (145)
T 2a61_A 31 ITPAQFDILQKIYF--EGPKRPGELSVLLGVAKSTVTGLVKRLEAD-----GYLTRT 80 (145)
T ss_dssp CCHHHHHHHHHHHH--HCCBCHHHHHHHHTCCHHHHHHHHHHHHHT-----TSEEEE
T ss_pred CCHHHHHHHHHHHH--cCCCCHHHHHHHHCCCchhHHHHHHHHHHC-----CCeeec
Confidence 47788888887765 367999999999999999999999999853 266654
No 78
>2yu3_A DNA-directed RNA polymerase III 39 kDa polypeptide F variant; winged helix domain, RNA polymerase III C39 subunit, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=56.00 E-value=10 Score=31.84 Aligned_cols=46 Identities=13% Similarity=0.105 Sum_probs=40.3
Q ss_pred EecHHHHHHHHhhcCCCCCcccHHHHHHHcCCChHHHHHHHHHhhc
Q psy14208 592 DVTTFQMAVLFAWNERPLDRLSFENLLLATELPDPELRRTLWSLVA 637 (778)
Q Consensus 592 ~~s~~Q~~ILl~FN~~~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~ 637 (778)
.++..|..|+-+..+..+++++..+|...|+++...+.++|..|..
T Consensus 34 ~Lt~~E~lVy~~I~~aGn~GIw~kdL~~~tnL~~~~vtkiLK~LE~ 79 (95)
T 2yu3_A 34 GSDNQEKLVYQIIEDAGNKGIWSRDVRYKSNLPLTEINKILKNLES 79 (95)
T ss_dssp SCSHHHHHHHHHHHHHTTSCEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 4588999999888664457899999999999999999999999985
No 79
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=55.95 E-value=11 Score=33.90 Aligned_cols=52 Identities=10% Similarity=0.045 Sum_probs=40.2
Q ss_pred ecHHHHHHHHhhcCCCCCcccHHHHHHHcCCChHHHHHHHHHhhcccccccceeeccc
Q psy14208 593 VTTFQMAVLFAWNERPLDRLSFENLLLATELPDPELRRTLWSLVAFPKIKRQILLYSE 650 (778)
Q Consensus 593 ~s~~Q~~ILl~FN~~~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~~k~k~~iL~~~~ 650 (778)
+|..|..||...... .+.+|..+|++.++++...+.+.+..|... +++.+.+
T Consensus 37 lt~~q~~vL~~l~~~-~~~~t~~eLa~~l~i~~~tvs~~l~~Le~~-----Glv~r~~ 88 (150)
T 3fm5_A 37 LRVRSYSVLVLACEQ-AEGVNQRGVAATMGLDPSQIVGLVDELEER-----GLVVRTL 88 (150)
T ss_dssp CCHHHHHHHHHHHHS-TTCCCSHHHHHHHTCCHHHHHHHHHHHHTT-----TSEEC--
T ss_pred CCHHHHHHHHHHHhC-CCCcCHHHHHHHHCCCHhHHHHHHHHHHHC-----CCEEeeC
Confidence 367788888877542 256899999999999999999999999853 2776643
No 80
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=55.46 E-value=17 Score=32.23 Aligned_cols=50 Identities=10% Similarity=0.074 Sum_probs=40.6
Q ss_pred ecHHHHHHHHhhcCCCCCcccHHHHHHHcCCChHHHHHHHHHhhcccccccceeeccc
Q psy14208 593 VTTFQMAVLFAWNERPLDRLSFENLLLATELPDPELRRTLWSLVAFPKIKRQILLYSE 650 (778)
Q Consensus 593 ~s~~Q~~ILl~FN~~~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~~k~k~~iL~~~~ 650 (778)
+|..|..||..+. . +.+|..+|++.+|++...+.+.|..|... +++.+.+
T Consensus 35 l~~~~~~iL~~l~-~--~~~~~~ela~~l~~s~~tvs~~l~~Le~~-----glv~r~~ 84 (146)
T 2gxg_A 35 LSYLDFLVLRATS-D--GPKTMAYLANRYFVTQSAITASVDKLEEM-----GLVVRVR 84 (146)
T ss_dssp CCHHHHHHHHHHT-T--SCBCHHHHHHHTTCCHHHHHHHHHHHHHT-----TSEEEEE
T ss_pred CCHHHHHHHHHHh-c--CCcCHHHHHHHhCCCchhHHHHHHHHHHC-----CCEEeec
Confidence 3677888887776 3 67999999999999999999999999853 2666543
No 81
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=55.32 E-value=15 Score=33.36 Aligned_cols=52 Identities=23% Similarity=0.167 Sum_probs=41.5
Q ss_pred ecHHHHHHHHhhcCCCCCcccHHHHHHHcCCChHHHHHHHHHhhcccccccceeeccc
Q psy14208 593 VTTFQMAVLFAWNERPLDRLSFENLLLATELPDPELRRTLWSLVAFPKIKRQILLYSE 650 (778)
Q Consensus 593 ~s~~Q~~ILl~FN~~~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~~k~k~~iL~~~~ 650 (778)
+|..|..||...... .+..+..+|++.++++...+.+.+..|... +++.+.+
T Consensus 29 Lt~~q~~vL~~L~~~-~~~~~~~eLa~~l~~~~~tvs~~v~~Le~~-----GlV~R~~ 80 (151)
T 4aik_A 29 LTQTHWVTLYNINRL-PPEQSQIQLAKAIGIEQPSLVRTLDQLEEK-----GLITRHT 80 (151)
T ss_dssp CCHHHHHHHHHHHHS-CTTSCHHHHHHHHTSCHHHHHHHHHHHHHT-----TSEEEEE
T ss_pred CCHHHHHHHHHHHHc-CCCCcHHHHHHHHCcCHHHHHHHHHHHHhC-----CCeEeec
Confidence 477898888877542 356788999999999999999999999853 2777654
No 82
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=55.29 E-value=8.4 Score=34.23 Aligned_cols=51 Identities=12% Similarity=0.083 Sum_probs=41.9
Q ss_pred ecHHHHHHHHhhcCCCCCcccHHHHHHHcCCChHHHHHHHHHhhcccccccceeeccc
Q psy14208 593 VTTFQMAVLFAWNERPLDRLSFENLLLATELPDPELRRTLWSLVAFPKIKRQILLYSE 650 (778)
Q Consensus 593 ~s~~Q~~ILl~FN~~~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~~k~k~~iL~~~~ 650 (778)
++..|..||..+.. .+.+|..+|++.+|++...+.+.|..|... +++.+.+
T Consensus 35 l~~~~~~iL~~l~~--~~~~~~~ela~~l~~~~~tvs~~l~~L~~~-----gli~r~~ 85 (142)
T 2bv6_A 35 LTYPQFLVLTILWD--ESPVNVKKVVTELALDTGTVSPLLKRMEQV-----DLIKRER 85 (142)
T ss_dssp CCHHHHHHHHHHHH--SSEEEHHHHHHHTTCCTTTHHHHHHHHHHT-----TSEEEEE
T ss_pred CCHHHHHHHHHHHH--cCCcCHHHHHHHHCCChhhHHHHHHHHHHC-----CCEEeec
Confidence 47789999988766 367999999999999999999999999853 2666543
No 83
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=55.24 E-value=9.9 Score=33.49 Aligned_cols=50 Identities=20% Similarity=0.032 Sum_probs=41.0
Q ss_pred ecHHHHHHHHhhcCCCCCcccHHHHHHHcCCChHHHHHHHHHhhcccccccceeecc
Q psy14208 593 VTTFQMAVLFAWNERPLDRLSFENLLLATELPDPELRRTLWSLVAFPKIKRQILLYS 649 (778)
Q Consensus 593 ~s~~Q~~ILl~FN~~~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~~k~k~~iL~~~ 649 (778)
+|..|+.||..... ++.+|..+|++.+|++...+.+.+..|... +++.+.
T Consensus 32 lt~~~~~iL~~l~~--~~~~~~~~la~~l~~~~~tvs~~l~~L~~~-----gli~r~ 81 (138)
T 1jgs_A 32 ITAAQFKVLCSIRC--AACITPVELKKVLSVDLGALTRMLDRLVCK-----GWVERL 81 (138)
T ss_dssp SCHHHHHHHHHHHH--HSSBCHHHHHHHHTCCHHHHHHHHHHHHHT-----TSEEEE
T ss_pred CCHHHHHHHHHHHh--cCCCCHHHHHHHHCCChHHHHHHHHHHHHC-----CCEEec
Confidence 46778888887765 367999999999999999999999999853 266654
No 84
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=55.18 E-value=6.9 Score=34.16 Aligned_cols=59 Identities=20% Similarity=0.353 Sum_probs=42.5
Q ss_pred hhhhhhhhccCCCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHhhhhcccccCCCCCCceEec
Q psy14208 714 QEAIIKILKMRKRISNAQLQTELVDILKNMFLPSKKMIKEQIEWLIEQKYMRRDDDDINVFVYL 777 (778)
Q Consensus 714 ~A~IVRiMK~~k~l~~~~L~~~v~~~l~~~F~p~~~~iK~~Ie~LIereyl~Rd~~d~~~y~Yi 777 (778)
|..|.+++-....++..+|...+.. ...++...+...|+.|.++|||.|..++ ..+.|.
T Consensus 12 q~~vL~~L~~~~~~t~~el~~~l~~----~~~~~~~Tvt~~l~rLe~kGlv~R~~~~-r~~~~~ 70 (126)
T 1sd4_A 12 EWDVMNIIWDKKSVSANEIVVEIQK----YKEVSDKTIRTLITRLYKKEIIKRYKSE-NIYFYS 70 (126)
T ss_dssp HHHHHHHHHHSSSEEHHHHHHHHHT----TSCCCHHHHHHHHHHHHHTTSEEEEEET-TEEEEE
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHhh----cCCCChhhHHHHHHHHHHCCceEEEeCC-CeEEEE
Confidence 3445555655677888877766632 2335788999999999999999998754 466664
No 85
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=55.11 E-value=11 Score=34.24 Aligned_cols=50 Identities=22% Similarity=0.178 Sum_probs=41.5
Q ss_pred ecHHHHHHHHhhcCCCCCcccHHHHHHHcCCChHHHHHHHHHhhcccccccceeecc
Q psy14208 593 VTTFQMAVLFAWNERPLDRLSFENLLLATELPDPELRRTLWSLVAFPKIKRQILLYS 649 (778)
Q Consensus 593 ~s~~Q~~ILl~FN~~~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~~k~k~~iL~~~ 649 (778)
++..|..||..+.. .+.+|..+|++.+|++...+.+.|..|... +++.+.
T Consensus 50 lt~~~~~iL~~l~~--~~~~t~~ela~~l~is~~tvs~~l~~Le~~-----Gli~r~ 99 (162)
T 3cjn_A 50 LSTAKMRALAILSA--KDGLPIGTLGIFAVVEQSTLSRALDGLQAD-----GLVRRE 99 (162)
T ss_dssp CCHHHHHHHHHHHH--SCSEEHHHHHHHHTCCHHHHHHHHHHHHHT-----TSEEEE
T ss_pred CCHHHHHHHHHHHH--CCCCCHHHHHHHHCCChhHHHHHHHHHHHC-----CCEEec
Confidence 47789999988776 367999999999999999999999999853 266654
No 86
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=55.00 E-value=10 Score=31.24 Aligned_cols=43 Identities=9% Similarity=0.144 Sum_probs=35.3
Q ss_pred cHHHHHHHHhhcCCCCCcccHHHHHHHcCCChHHHHHHHHHhhcc
Q psy14208 594 TTFQMAVLFAWNERPLDRLSFENLLLATELPDPELRRTLWSLVAF 638 (778)
Q Consensus 594 s~~Q~~ILl~FN~~~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~ 638 (778)
+..+..||..+.. ++.+|+.+|++.+|++...+.++|..|...
T Consensus 15 ~~~~~~iL~~L~~--~~~~~~~ela~~l~is~~tvs~~l~~L~~~ 57 (100)
T 1ub9_A 15 NPVRLGIMIFLLP--RRKAPFSQIQKVLDLTPGNLDSHIRVLERN 57 (100)
T ss_dssp SHHHHHHHHHHHH--HSEEEHHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHh--cCCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 4567777766643 257999999999999999999999999853
No 87
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=54.94 E-value=9.8 Score=34.78 Aligned_cols=51 Identities=18% Similarity=0.121 Sum_probs=42.3
Q ss_pred ecHHHHHHHHhhcCCCCCcccHHHHHHHcCCChHHHHHHHHHhhcccccccceeeccc
Q psy14208 593 VTTFQMAVLFAWNERPLDRLSFENLLLATELPDPELRRTLWSLVAFPKIKRQILLYSE 650 (778)
Q Consensus 593 ~s~~Q~~ILl~FN~~~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~~k~k~~iL~~~~ 650 (778)
+|..|..||..... .+.+|..+|++.+|++...+.+.+..|... +++.+.+
T Consensus 51 lt~~q~~vL~~l~~--~~~~t~~eLa~~l~~~~~~vs~~l~~Le~~-----Glv~r~~ 101 (161)
T 3e6m_A 51 LPTPKLRLLSSLSA--YGELTVGQLATLGVMEQSTTSRTVDQLVDE-----GLAARSI 101 (161)
T ss_dssp CCHHHHHHHHHHHH--HSEEEHHHHHHHTTCCHHHHHHHHHHHHHT-----TSEEECC
T ss_pred CCHHHHHHHHHHHh--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHC-----CCEEeeC
Confidence 46779999988876 368999999999999999999999999853 2777653
No 88
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=54.79 E-value=10 Score=33.48 Aligned_cols=51 Identities=12% Similarity=0.043 Sum_probs=41.7
Q ss_pred ecHHHHHHHHhhcCCCCCcccHHHHHHHcCCChHHHHHHHHHhhcccccccceeeccc
Q psy14208 593 VTTFQMAVLFAWNERPLDRLSFENLLLATELPDPELRRTLWSLVAFPKIKRQILLYSE 650 (778)
Q Consensus 593 ~s~~Q~~ILl~FN~~~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~~k~k~~iL~~~~ 650 (778)
++..|..||..+.. ++.+|..+|++.+|++...+.+.|..|...| ++.+.+
T Consensus 29 l~~~~~~iL~~l~~--~~~~~~~ela~~l~is~~~vs~~l~~L~~~g-----li~~~~ 79 (142)
T 3bdd_A 29 ISLTRYSILQTLLK--DAPLHQLALQERLQIDRAAVTRHLKLLEESG-----YIIRKR 79 (142)
T ss_dssp SCHHHHHHHHHHHH--HCSBCHHHHHHHHTCCHHHHHHHHHHHHHTT-----SEEEEE
T ss_pred CCHHHHHHHHHHHh--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCC-----CEEecC
Confidence 57788888887766 3679999999999999999999999998532 666543
No 89
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=54.75 E-value=10 Score=33.49 Aligned_cols=50 Identities=16% Similarity=0.034 Sum_probs=41.1
Q ss_pred ecHHHHHHHHhhcCCCCCcccHHHHHHHcCCChHHHHHHHHHhhcccccccceeecc
Q psy14208 593 VTTFQMAVLFAWNERPLDRLSFENLLLATELPDPELRRTLWSLVAFPKIKRQILLYS 649 (778)
Q Consensus 593 ~s~~Q~~ILl~FN~~~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~~k~k~~iL~~~ 649 (778)
+|..|..||..+.. .+.+|..+|++.+|++...+.+.|..|... +++.+.
T Consensus 34 lt~~~~~iL~~l~~--~~~~t~~ela~~l~~s~~~vs~~l~~Le~~-----glv~r~ 83 (142)
T 2fbi_A 34 LTEQQWRVIRILRQ--QGEMESYQLANQACILRPSMTGVLARLERD-----GIVRRW 83 (142)
T ss_dssp CCHHHHHHHHHHHH--HCSEEHHHHHHHTTCCHHHHHHHHHHHHHT-----TSEEEE
T ss_pred CCHHHHHHHHHHHH--cCCCCHHHHHHHHCCCHhHHHHHHHHHHHC-----CCEEee
Confidence 47789888887765 357999999999999999999999999853 266654
No 90
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=54.72 E-value=14 Score=32.58 Aligned_cols=54 Identities=11% Similarity=0.039 Sum_probs=39.8
Q ss_pred EecHHHHHHHHhh---cCCCCCcccHHHHHHHcCCChHHHHHHHHHhhcccccccceeeccc
Q psy14208 592 DVTTFQMAVLFAW---NERPLDRLSFENLLLATELPDPELRRTLWSLVAFPKIKRQILLYSE 650 (778)
Q Consensus 592 ~~s~~Q~~ILl~F---N~~~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~~k~k~~iL~~~~ 650 (778)
-++.-|+.||+.+ ++.+....|..+|++.+|++..++.+.|..|... ++|.+.+
T Consensus 29 gLt~~e~~vll~L~~~~~~~~~~ps~~~LA~~l~~s~~~V~~~l~~Le~k-----GlI~~~~ 85 (128)
T 2vn2_A 29 GLGEGELVLLLHMQSFFEEGVLFPTPAELAERMTVSAAECMEMVRRLLQK-----GMIAIEE 85 (128)
T ss_dssp TCCHHHHHHHHHHHHHHTTTCSSCCHHHHHHTSSSCHHHHHHHHHHHHHT-----TSSEECC
T ss_pred CCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHC-----CCEEEEe
Confidence 3566677666544 3322244899999999999999999999999963 2777654
No 91
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=54.20 E-value=8 Score=29.97 Aligned_cols=42 Identities=14% Similarity=0.243 Sum_probs=33.0
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHcCCChHHHHHHHHHhhcc
Q psy14208 596 FQMAVLFAWNERPLDRLSFENLLLATELPDPELRRTLWSLVAF 638 (778)
Q Consensus 596 ~Q~~ILl~FN~~~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~ 638 (778)
..--||.+|.+. ...+|..+|++.+|++...+.+.|..|...
T Consensus 11 ~~~~IL~~L~~~-~~~~s~~eLA~~lglsr~tv~~~l~~L~~~ 52 (67)
T 2heo_A 11 LEQKILQVLSDD-GGPVAIFQLVKKCQVPKKTLNQVLYRLKKE 52 (67)
T ss_dssp HHHHHHHHHHHH-CSCEEHHHHHHHHCSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHc-CCCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 344566666441 246999999999999999999999999853
No 92
>3mq0_A Transcriptional repressor of the blcabc operon; helix-turn-helix, GAF fold, transcription repressor; 1.79A {Agrobacterium tumefaciens}
Probab=54.07 E-value=11 Score=38.39 Aligned_cols=57 Identities=16% Similarity=0.128 Sum_probs=42.1
Q ss_pred HHHHHhhcCCCCCcccHHHHHHHcCCChHHHHHHHHHhhcccccccceeecccCCCCCCCCCCCCeEEEcccc
Q psy14208 598 MAVLFAWNERPLDRLSFENLLLATELPDPELRRTLWSLVAFPKIKRQILLYSEEVQSPKDFTEHTSFWINQEF 670 (778)
Q Consensus 598 ~~ILl~FN~~~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~~k~k~~iL~~~~~~~~~~~~~~~~~f~lN~~F 670 (778)
..||.+|.+. ...+|+.||++.+|+|...+.+.|..|...+ +|.+.+ +..|.+-..+
T Consensus 33 l~IL~~l~~~-~~~ltl~eia~~lgl~ksTv~RlL~tL~~~G-----~v~~~~----------~~~Y~LG~~~ 89 (275)
T 3mq0_A 33 VRILDLVAGS-PRDLTAAELTRFLDLPKSSAHGLLAVMTELD-----LLARSA----------DGTLRIGPHS 89 (275)
T ss_dssp HHHHHHHHHC-SSCEEHHHHHHHHTCC--CHHHHHHHHHHTT-----SEEECT----------TSEEEECTHH
T ss_pred HHHHHHHhhC-CCCCCHHHHHHHHCcCHHHHHHHHHHHHHCC-----CEEECC----------CCcEEehHHH
Confidence 4478888874 3579999999999999999999999999643 787653 2467776543
No 93
>3f8b_A Transcriptional regulator, PADR-like family; winged helix turn helix, transcription regulator; 2.00A {Lactococcus lactis subsp} SCOP: a.4.5.0 PDB: 3f8c_A* 3f8f_A*
Probab=54.02 E-value=22 Score=30.75 Aligned_cols=58 Identities=5% Similarity=0.003 Sum_probs=50.4
Q ss_pred hhhhhhhhhhhhhccCCCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHhhhhcccccC
Q psy14208 709 RILRVQEAIIKILKMRKRISNAQLQTELVDILKNMFLPSKKMIKEQIEWLIEQKYMRRD 767 (778)
Q Consensus 709 R~~~i~A~IVRiMK~~k~l~~~~L~~~v~~~l~~~F~p~~~~iK~~Ie~LIereyl~Rd 767 (778)
++-.++.+|..++. ++.++--+|...+.+.....+.++...+-..+..|-++|+|++.
T Consensus 9 ~~g~l~~~IL~~L~-~~~~~Gyei~~~l~~~~~~~~~i~~gtly~~L~rLe~~GlI~~~ 66 (116)
T 3f8b_A 9 LRAQTNVILLNVLK-QGDNYVYGIIKQVKEASNGEMELNEATLYTIFKRLEKDGIISSY 66 (116)
T ss_dssp HHHHHHHHHHHHHH-HCCBCHHHHHHHHHHHTTTCCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HhchHHHHHHHHHH-hCCCCHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHCCCEEEE
Confidence 45568888888886 47889999999998877667899999999999999999999985
No 94
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=53.82 E-value=10 Score=33.32 Aligned_cols=58 Identities=17% Similarity=0.286 Sum_probs=41.6
Q ss_pred hhhhhhhhhhccCCC--CChHHHHHHHHHHHhcCCCCChhhHHHHHHHhhhhcccccCC--CCCC--ceEec
Q psy14208 712 RVQEAIIKILKMRKR--ISNAQLQTELVDILKNMFLPSKKMIKEQIEWLIEQKYMRRDD--DDIN--VFVYL 777 (778)
Q Consensus 712 ~i~A~IVRiMK~~k~--l~~~~L~~~v~~~l~~~F~p~~~~iK~~Ie~LIereyl~Rd~--~d~~--~y~Yi 777 (778)
..+..|.+++..... ++..+|-..+ ..+...+-+.|+.|.++|||.|.. .|+. .|.|.
T Consensus 26 ~~e~~il~~L~~~~~~~~t~~eLa~~l--------~~s~sTV~r~L~~L~~~GlV~r~~~~~d~~~~~~~y~ 89 (123)
T 3r0a_A 26 KADLNVMKSFLNEPDRWIDTDALSKSL--------KLDVSTVQRSVKKLHEKEILQRSQQNLDGGGYVYIYK 89 (123)
T ss_dssp HHHHHHHHHHHHSTTCCEEHHHHHHHH--------TSCHHHHHHHHHHHHHTTSEEEEEEECTTSCEEEEEE
T ss_pred HHHHHHHHHHHHCCCCCcCHHHHHHHH--------CcCHHHHHHHHHHHHHCCCEEeeCCccCCCcceEEEe
Confidence 345667777776655 8988776554 257899999999999999999853 3333 45554
No 95
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=52.93 E-value=14 Score=34.11 Aligned_cols=52 Identities=21% Similarity=0.116 Sum_probs=41.2
Q ss_pred ecHHHHHHHHhhcCCCCCcccHHHHHHHcCCChHHHHHHHHHhhcccccccceeeccc
Q psy14208 593 VTTFQMAVLFAWNERPLDRLSFENLLLATELPDPELRRTLWSLVAFPKIKRQILLYSE 650 (778)
Q Consensus 593 ~s~~Q~~ILl~FN~~~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~~k~k~~iL~~~~ 650 (778)
+|..|..||..+... .+.+|..+|++.++++...+.+.+..|... +++.+.+
T Consensus 51 lt~~q~~vL~~L~~~-~~~~t~~eLa~~l~i~~~tvs~~l~~Le~~-----GlV~r~~ 102 (166)
T 3deu_A 51 LTQTHWVTLHNIHQL-PPDQSQIQLAKAIGIEQPSLVRTLDQLEDK-----GLISRQT 102 (166)
T ss_dssp CCHHHHHHHHHHHHS-CSSEEHHHHHHHHTSCHHHHHHHHHHHHHT-----TSEEEC-
T ss_pred CCHHHHHHHHHHHHc-CCCCCHHHHHHHHCCCHhhHHHHHHHHHHC-----CCEEeeC
Confidence 467788888877542 256999999999999999999999999853 2777653
No 96
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=52.55 E-value=10 Score=34.96 Aligned_cols=50 Identities=14% Similarity=0.106 Sum_probs=41.7
Q ss_pred ecHHHHHHHHhhcCCCCCcccHHHHHHHcCCChHHHHHHHHHhhcccccccceeecc
Q psy14208 593 VTTFQMAVLFAWNERPLDRLSFENLLLATELPDPELRRTLWSLVAFPKIKRQILLYS 649 (778)
Q Consensus 593 ~s~~Q~~ILl~FN~~~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~~k~k~~iL~~~ 649 (778)
++..|..||..+.. .+.+|..+|++.+|++...+.+.+..|... +++.+.
T Consensus 43 lt~~~~~iL~~L~~--~~~~t~~eLa~~l~is~~tvs~~l~~Le~~-----GlV~r~ 92 (168)
T 2nyx_A 43 ITIPQFRTLVILSN--HGPINLATLATLLGVQPSATGRMVDRLVGA-----ELIDRL 92 (168)
T ss_dssp CCHHHHHHHHHHHH--HCSEEHHHHHHHHTSCHHHHHHHHHHHHHT-----TSEEEE
T ss_pred CCHHHHHHHHHHHH--cCCCCHHHHHHHhCCCHHHHHHHHHHHHHC-----CCEEec
Confidence 47889999988766 367999999999999999999999999853 267654
No 97
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=52.33 E-value=16 Score=32.40 Aligned_cols=49 Identities=10% Similarity=0.072 Sum_probs=37.1
Q ss_pred cHHHHHHHHhh--cCCCCCcccHHHHHHHcCCChHHHHHHHHHhhcccccccceeeccc
Q psy14208 594 TTFQMAVLFAW--NERPLDRLSFENLLLATELPDPELRRTLWSLVAFPKIKRQILLYSE 650 (778)
Q Consensus 594 s~~Q~~ILl~F--N~~~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~~k~k~~iL~~~~ 650 (778)
+..|..||..+ .+ +++|..+|++.+|++...+.+.|..|...| ++.+.+
T Consensus 25 ~~~~~~il~~L~~~~---~~~t~~ela~~l~~~~stvs~~l~~L~~~G-----~v~r~~ 75 (152)
T 1ku9_A 25 NKSVGAVYAILYLSD---KPLTISDIMEELKISKGNVSMSLKKLEELG-----FVRKVW 75 (152)
T ss_dssp CHHHHHHHHHHHHCS---SCEEHHHHHHHHTCCHHHHHHHHHHHHHTT-----SEEEEC
T ss_pred ChhHHHHHHHHHHcC---CCCCHHHHHHHHCcCHHHHHHHHHHHHHCC-----CEEEEe
Confidence 45565555433 33 579999999999999999999999998632 777653
No 98
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=51.90 E-value=12 Score=33.47 Aligned_cols=50 Identities=14% Similarity=-0.045 Sum_probs=41.2
Q ss_pred ecHHHHHHHHhhcCCCCCcccHHHHHHHcCCChHHHHHHHHHhhcccccccceeecc
Q psy14208 593 VTTFQMAVLFAWNERPLDRLSFENLLLATELPDPELRRTLWSLVAFPKIKRQILLYS 649 (778)
Q Consensus 593 ~s~~Q~~ILl~FN~~~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~~k~k~~iL~~~ 649 (778)
++..|..||..+.. ++.+|..+|++.+|++...+.+.|..|...| ++.+.
T Consensus 40 l~~~~~~iL~~l~~--~~~~t~~ela~~l~~~~~tvs~~l~~Le~~G-----lv~r~ 89 (150)
T 2rdp_A 40 ITPPQFVALQWLLE--EGDLTVGELSNKMYLACSTTTDLVDRMERNG-----LVARV 89 (150)
T ss_dssp SCHHHHHHHHHHHH--HCSBCHHHHHHHHTCCHHHHHHHHHHHHHTT-----SEEEE
T ss_pred CCHHHHHHHHHHHH--cCCCCHHHHHHHHCCCchhHHHHHHHHHHCC-----Ceeec
Confidence 46788888887766 3679999999999999999999999998532 66654
No 99
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=51.88 E-value=11 Score=33.59 Aligned_cols=50 Identities=14% Similarity=0.017 Sum_probs=40.6
Q ss_pred ecHHHHHHHHhhcCCCCCcccHHHHHHHcCCChHHHHHHHHHhhcccccccceeecc
Q psy14208 593 VTTFQMAVLFAWNERPLDRLSFENLLLATELPDPELRRTLWSLVAFPKIKRQILLYS 649 (778)
Q Consensus 593 ~s~~Q~~ILl~FN~~~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~~k~k~~iL~~~ 649 (778)
+|..|..||..... ++.+|..+|++.++++...+.+.+..|... +++.+.
T Consensus 27 lt~~~~~iL~~l~~--~~~~t~~~la~~l~~s~~~vs~~l~~Le~~-----gli~r~ 76 (144)
T 1lj9_A 27 LTRGQYLYLVRVCE--NPGIIQEKIAELIKVDRTTAARAIKRLEEQ-----GFIYRQ 76 (144)
T ss_dssp CTTTHHHHHHHHHH--STTEEHHHHHHHHTCCHHHHHHHHHHHHHT-----TSEEEE
T ss_pred CCHHHHHHHHHHHH--CcCcCHHHHHHHHCCCHhHHHHHHHHHHHC-----CCEEee
Confidence 46678888877766 367999999999999999999999999853 266654
No 100
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=51.87 E-value=12 Score=33.71 Aligned_cols=50 Identities=6% Similarity=0.019 Sum_probs=41.1
Q ss_pred ecHHHHHHHHhhcCCCCCcccHHHHHHHcCCChHHHHHHHHHhhcccccccceeecc
Q psy14208 593 VTTFQMAVLFAWNERPLDRLSFENLLLATELPDPELRRTLWSLVAFPKIKRQILLYS 649 (778)
Q Consensus 593 ~s~~Q~~ILl~FN~~~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~~k~k~~iL~~~ 649 (778)
++..|..||..+.. .+.+|..+|++.++++...+.+.|..|... +++.+.
T Consensus 42 lt~~~~~iL~~l~~--~~~~t~~ela~~l~is~~tvs~~l~~Le~~-----Gli~r~ 91 (154)
T 2eth_A 42 MKTTELYAFLYVAL--FGPKKMKEIAEFLSTTKSNVTNVVDSLEKR-----GLVVRE 91 (154)
T ss_dssp SBHHHHHHHHHHHH--HCCBCHHHHHHHTTSCHHHHHHHHHHHHHT-----TSEEEE
T ss_pred CCHHHHHHHHHHHH--cCCCCHHHHHHHHCCCHHHHHHHHHHHHHC-----CCEEee
Confidence 47788888887765 357999999999999999999999999853 266654
No 101
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=51.63 E-value=24 Score=32.02 Aligned_cols=47 Identities=6% Similarity=0.021 Sum_probs=35.1
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHcCCChHHHHHHHHHhhcccccccceeecc
Q psy14208 596 FQMAVLFAWNERPLDRLSFENLLLATELPDPELRRTLWSLVAFPKIKRQILLYS 649 (778)
Q Consensus 596 ~Q~~ILl~FN~~~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~~k~k~~iL~~~ 649 (778)
+.+.+.+.-+. ...+|.++|++.+++|...+.+.|..|...| ++...
T Consensus 17 l~~L~~La~~~--~~~~~~~~iA~~~~i~~~~l~kil~~L~~~G-----lv~s~ 63 (149)
T 1ylf_A 17 VHILSILKNNP--SSLCTSDYMAESVNTNPVVIRKIMSYLKQAG-----FVYVN 63 (149)
T ss_dssp HHHHHHHHHSC--GGGCCHHHHHHHHTSCHHHHHHHHHHHHHTT-----SEEEC
T ss_pred HHHHHHHHhCC--CCCcCHHHHHHHHCcCHHHHHHHHHHHHHCC-----cEEEc
Confidence 34444444433 3579999999999999999999999998543 76643
No 102
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=51.41 E-value=18 Score=30.74 Aligned_cols=48 Identities=13% Similarity=0.074 Sum_probs=37.5
Q ss_pred cHHHHHHHHhhcCCCCCcccHHHHHHHcCCChHHHHHHHHHhhcccccccceeecc
Q psy14208 594 TTFQMAVLFAWNERPLDRLSFENLLLATELPDPELRRTLWSLVAFPKIKRQILLYS 649 (778)
Q Consensus 594 s~~Q~~ILl~FN~~~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~~k~k~~iL~~~ 649 (778)
+..+..||..+.+ +.+|+.+|++.+|++...+.++|..|...| ++...
T Consensus 20 ~~~r~~IL~~L~~---~~~~~~ela~~l~is~~tv~~~l~~L~~~g-----li~~~ 67 (114)
T 2oqg_A 20 DETRWEILTELGR---ADQSASSLATRLPVSRQAIAKHLNALQACG-----LVESV 67 (114)
T ss_dssp CHHHHHHHHHHHH---SCBCHHHHHHHSSSCHHHHHHHHHHHHHTT-----SEEEE
T ss_pred ChHHHHHHHHHHc---CCCCHHHHHHHHCcCHHHHHHHHHHHHHCC-----CeeEE
Confidence 3456677776643 569999999999999999999999998533 66543
No 103
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=51.40 E-value=10 Score=34.12 Aligned_cols=51 Identities=16% Similarity=0.105 Sum_probs=41.9
Q ss_pred ecHHHHHHHHhhcCCCCCcccHHHHHHHcCCChHHHHHHHHHhhcccccccceeeccc
Q psy14208 593 VTTFQMAVLFAWNERPLDRLSFENLLLATELPDPELRRTLWSLVAFPKIKRQILLYSE 650 (778)
Q Consensus 593 ~s~~Q~~ILl~FN~~~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~~k~k~~iL~~~~ 650 (778)
++..|..||..+.. .+.+|..+|++.+|++...+.+.|..|... +++.+.+
T Consensus 35 l~~~~~~iL~~l~~--~~~~t~~ela~~l~~s~~tvs~~l~~Le~~-----glv~r~~ 85 (155)
T 1s3j_A 35 VTPAQLFVLASLKK--HGSLKVSEIAERMEVKPSAVTLMADRLEQK-----NLIARTH 85 (155)
T ss_dssp CCHHHHHHHHHHHH--HSEEEHHHHHHHHTSCHHHHHHHHHHHHHT-----TSEEEEE
T ss_pred CCHHHHHHHHHHHH--cCCCCHHHHHHHHCCCHHHHHHHHHHHHHC-----CCEeecC
Confidence 47789888888766 367999999999999999999999999853 2666543
No 104
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=51.37 E-value=9.2 Score=34.86 Aligned_cols=50 Identities=16% Similarity=0.095 Sum_probs=40.4
Q ss_pred cHHHHHHHHhhcCCCCCcccHHHHHHHcCCChHHHHHHHHHhhcccccccceeeccc
Q psy14208 594 TTFQMAVLFAWNERPLDRLSFENLLLATELPDPELRRTLWSLVAFPKIKRQILLYSE 650 (778)
Q Consensus 594 s~~Q~~ILl~FN~~~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~~k~k~~iL~~~~ 650 (778)
|..|..||..... ++++|..+|++.++++...+.+.+..|... +++.+.+
T Consensus 49 t~~q~~vL~~l~~--~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~-----Glv~r~~ 98 (159)
T 3s2w_A 49 GSGQFPFLMRLYR--EDGINQESLSDYLKIDKGTTARAIQKLVDE-----GYVFRQR 98 (159)
T ss_dssp CTTTHHHHHHHHH--SCSEEHHHHHHHHTCCHHHHHHHHHHHHHT-----TSEEEEE
T ss_pred CHHHHHHHHHHHH--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHC-----CCEEEec
Confidence 5567888877765 367999999999999999999999999853 2776653
No 105
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=51.36 E-value=7.6 Score=34.89 Aligned_cols=53 Identities=9% Similarity=-0.093 Sum_probs=35.8
Q ss_pred ecHHHHHHHHhhcCCCCCcccHHHHHHHcCCChHHHHHHHHHhhcccccccceeeccc
Q psy14208 593 VTTFQMAVLFAWNERPLDRLSFENLLLATELPDPELRRTLWSLVAFPKIKRQILLYSE 650 (778)
Q Consensus 593 ~s~~Q~~ILl~FN~~~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~~k~k~~iL~~~~ 650 (778)
+|..|..||......+.+++|..+|++.++++...+.+.+..|... +++.+.+
T Consensus 39 lt~~q~~vL~~l~~~~~~~~t~~eLa~~l~~~~~~vs~~l~~L~~~-----Glv~r~~ 91 (148)
T 3jw4_A 39 LNSQQGRMIGYIYENQESGIIQKDLAQFFGRRGASITSMLQGLEKK-----GYIERRI 91 (148)
T ss_dssp CCHHHHHHHHHHHHHTTTCCCHHHHHHC------CHHHHHHHHHHT-----TSBCCC-
T ss_pred CCHHHHHHHHHHHhCCCCCCCHHHHHHHHCCChhHHHHHHHHHHHC-----CCEEeeC
Confidence 4678888888776532368999999999999999999999999853 2676543
No 106
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=51.04 E-value=18 Score=35.95 Aligned_cols=50 Identities=18% Similarity=0.141 Sum_probs=40.8
Q ss_pred ecHHHHHHHHhhcCCCCCcccHHHHHHHcCCChHHHHHHHHHhhcccccccceeecc
Q psy14208 593 VTTFQMAVLFAWNERPLDRLSFENLLLATELPDPELRRTLWSLVAFPKIKRQILLYS 649 (778)
Q Consensus 593 ~s~~Q~~ILl~FN~~~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~~k~k~~iL~~~ 649 (778)
++..|..||..+.. ++.+|..+|++.+|++...+.+.|..|...| ++.+.
T Consensus 150 L~~~~~~IL~~L~~--~~~~s~~eLA~~lglsksTv~r~L~~Le~~G-----lV~r~ 199 (244)
T 2wte_A 150 YSREEMKLLNVLYE--TKGTGITELAKMLDKSEKTLINKIAELKKFG-----ILTQK 199 (244)
T ss_dssp CCHHHHHHHHHHHH--HTCBCHHHHHHHHTCCHHHHHHHHHHHHHTT-----SEEEE
T ss_pred CCHHHHHHHHHHHH--cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCC-----CEEEe
Confidence 46678888887754 3679999999999999999999999998533 67654
No 107
>1bja_A Transcription regulatory protein MOTA; activation domain, middle mode transcription, alpha helical structure, transcription regulation; 2.19A {Enterobacteria phage T4} SCOP: a.4.5.9 PDB: 1i1s_A
Probab=51.04 E-value=17 Score=30.42 Aligned_cols=44 Identities=9% Similarity=0.150 Sum_probs=38.4
Q ss_pred EecHHHHHHHHhhcCCCCCcccHHHHHH-HcCCChHHHHHHHHHhhc
Q psy14208 592 DVTTFQMAVLFAWNERPLDRLSFENLLL-ATELPDPELRRTLWSLVA 637 (778)
Q Consensus 592 ~~s~~Q~~ILl~FN~~~~~~~t~~ei~~-~t~i~~~~l~~~L~sL~~ 637 (778)
.++.-|..||...... +..|..+|++ ..+++...+-+++.+|..
T Consensus 13 ~L~~~QfsiL~~L~~~--~~~t~~~Lae~~l~~drstvsrnl~~L~r 57 (95)
T 1bja_A 13 VLNEKTATILITIAKK--DFITAAEVREVHPDLGNAVVNSNIGVLIK 57 (95)
T ss_dssp SSCHHHHHHHHHHHHS--TTBCHHHHHHTCTTSCHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHC--CCCCHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 4577899999887663 5899999999 999999999999999985
No 108
>2obp_A Putative DNA-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.70A {Ralstonia eutropha} SCOP: a.4.5.71
Probab=50.75 E-value=18 Score=30.40 Aligned_cols=46 Identities=26% Similarity=0.276 Sum_probs=38.1
Q ss_pred ecHHHHHHHHhhcCC----CCCcccHHHHHHHcCCChHHHHHHHHHhhcc
Q psy14208 593 VTTFQMAVLFAWNER----PLDRLSFENLLLATELPDPELRRTLWSLVAF 638 (778)
Q Consensus 593 ~s~~Q~~ILl~FN~~----~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~ 638 (778)
+++.|..+|..+.+. +...+++.+|++.++++...|.++|..|...
T Consensus 14 l~~~q~~vL~~L~~~~~~~~g~~~s~~eLa~~l~l~~stLsR~l~rLe~~ 63 (96)
T 2obp_A 14 IDPAIVEVLLVLREAGIENGATPWSLPKIAKRAQLPMSVLRRVLTQLQAA 63 (96)
T ss_dssp CCHHHHHHHHHHHHHTSSTTCCCCBHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHhhCCCCCcCHHHHHHHhCCchhhHHHHHHHHHHC
Confidence 578888888866542 2356999999999999999999999999853
No 109
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=50.19 E-value=15 Score=32.62 Aligned_cols=50 Identities=16% Similarity=0.098 Sum_probs=40.8
Q ss_pred ecHHHHHHHHhhcCCCCCcccHHHHHHHcCCChHHHHHHHHHhhcccccccceeeccc
Q psy14208 593 VTTFQMAVLFAWNERPLDRLSFENLLLATELPDPELRRTLWSLVAFPKIKRQILLYSE 650 (778)
Q Consensus 593 ~s~~Q~~ILl~FN~~~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~~k~k~~iL~~~~ 650 (778)
+|..|..||...... +. |..+|++.+|++...+.+.+..|... +++.+.+
T Consensus 35 lt~~~~~iL~~l~~~--~~-~~~~la~~l~~~~~tvs~~l~~Le~~-----Glv~r~~ 84 (144)
T 3f3x_A 35 LSYLDFSILKATSEE--PR-SMVYLANRYFVTQSAITAAVDKLEAK-----GLVRRIR 84 (144)
T ss_dssp CCHHHHHHHHHHHHS--CE-EHHHHHHHHTCCHHHHHHHHHHHHHT-----TSEEEEE
T ss_pred CCHHHHHHHHHHHHC--CC-CHHHHHHHHCCChhHHHHHHHHHHHC-----CCEEecc
Confidence 577899999887763 45 99999999999999999999999853 2666543
No 110
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=49.55 E-value=27 Score=30.41 Aligned_cols=41 Identities=17% Similarity=0.217 Sum_probs=33.3
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHcCCChHHHHHHHHHhhcc
Q psy14208 595 TFQMAVLFAWNERPLDRLSFENLLLATELPDPELRRTLWSLVAF 638 (778)
Q Consensus 595 ~~Q~~ILl~FN~~~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~ 638 (778)
..+..||..+.+ +.+++.+|++.+|++...+.++|..|...
T Consensus 46 ~~rl~IL~~L~~---~~~s~~ela~~lgis~stvs~~L~~Le~~ 86 (122)
T 1r1t_A 46 PNRLRLLSLLAR---SELCVGDLAQAIGVSESAVSHQLRSLRNL 86 (122)
T ss_dssp HHHHHHHHHHTT---CCBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 345566666654 46899999999999999999999999864
No 111
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=49.23 E-value=19 Score=32.61 Aligned_cols=45 Identities=9% Similarity=0.067 Sum_probs=37.5
Q ss_pred ecHHHHHHHHhhcCCCCCcccHHHHHHHcCCChHHHHHHHHHhhccc
Q psy14208 593 VTTFQMAVLFAWNERPLDRLSFENLLLATELPDPELRRTLWSLVAFP 639 (778)
Q Consensus 593 ~s~~Q~~ILl~FN~~~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~~ 639 (778)
++..+..||.++.+ ++.+|+.+|++.+|++...+.+.|..|...|
T Consensus 5 ld~~~~~iL~~L~~--~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G 49 (150)
T 2w25_A 5 LDDIDRILVRELAA--DGRATLSELATRAGLSVSAVQSRVRRLESRG 49 (150)
T ss_dssp CCHHHHHHHHHHHH--CTTCCHHHHHHHHTSCHHHHHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHHH--cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 45667778877765 3679999999999999999999999998643
No 112
>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP}
Probab=49.20 E-value=15 Score=36.83 Aligned_cols=56 Identities=20% Similarity=0.291 Sum_probs=42.7
Q ss_pred HHHHhhcCCCCCcccHHHHHHHcCCChHHHHHHHHHhhcccccccceeecccCCCCCCCCCCCCeEEEcccc
Q psy14208 599 AVLFAWNERPLDRLSFENLLLATELPDPELRRTLWSLVAFPKIKRQILLYSEEVQSPKDFTEHTSFWINQEF 670 (778)
Q Consensus 599 ~ILl~FN~~~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~~k~k~~iL~~~~~~~~~~~~~~~~~f~lN~~F 670 (778)
.||.+|... ...+|+.||++.+|++...+.+.|..|...+ ++.+.+ .+ .|.+...+
T Consensus 27 ~iL~~l~~~-~~~~~~~eia~~~gl~kstv~r~l~tL~~~G-----~v~~~~---------~~-~Y~lg~~~ 82 (260)
T 2o0y_A 27 DLLELFDAA-HPTRSLKELVEGTKLPKTTVVRLVATMCARS-----VLTSRA---------DG-SYSLGPEM 82 (260)
T ss_dssp HHHTTCBTT-BSSBCHHHHHHHHCCCHHHHHHHHHHHHHTT-----SEEECT---------TS-CEEECHHH
T ss_pred HHHHHHhhC-CCCcCHHHHHHHHCcCHHHHHHHHHHHHHCC-----CEEECC---------CC-eEEecHHH
Confidence 467677642 3579999999999999999999999998643 777643 22 78876544
No 113
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=49.06 E-value=13 Score=33.46 Aligned_cols=48 Identities=13% Similarity=0.185 Sum_probs=40.6
Q ss_pred ecHHHHHHHHhhcCCCCCcccHHHHHHHcCCChHHHHHHHHHhhcccccccceeec
Q psy14208 593 VTTFQMAVLFAWNERPLDRLSFENLLLATELPDPELRRTLWSLVAFPKIKRQILLY 648 (778)
Q Consensus 593 ~s~~Q~~ILl~FN~~~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~~k~k~~iL~~ 648 (778)
+|..|..||... . .+++|..+|++.+|++...+.+.+..|... +++.+
T Consensus 36 lt~~q~~iL~~l-~--~~~~t~~eLa~~l~~~~~~vs~~l~~Le~~-----Glv~r 83 (151)
T 3kp7_A 36 ISAEQSHVLNML-S--IEALTVGQITEKQGVNKAAVSRRVKKLLNA-----ELVKL 83 (151)
T ss_dssp CCHHHHHHHHHH-H--HSCBCHHHHHHHHCSCSSHHHHHHHHHHHT-----TSEEC
T ss_pred CCHHHHHHHHHH-H--cCCcCHHHHHHHHCCCHHHHHHHHHHHHHC-----CCEEe
Confidence 478898898877 5 478999999999999999999999999853 26665
No 114
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=48.90 E-value=11 Score=30.22 Aligned_cols=52 Identities=17% Similarity=0.229 Sum_probs=39.9
Q ss_pred hhhhhhhccCC---CCChHHHHHHHHHHHhcCCCCChhhHHHHHHHhhhhcccccCCCCCCce
Q psy14208 715 EAIIKILKMRK---RISNAQLQTELVDILKNMFLPSKKMIKEQIEWLIEQKYMRRDDDDINVF 774 (778)
Q Consensus 715 A~IVRiMK~~k---~l~~~~L~~~v~~~l~~~F~p~~~~iK~~Ie~LIereyl~Rd~~d~~~y 774 (778)
-.|..+|+... .++..+|-..+ ..+...|.++|..|.+.|+|+|.++.+..|
T Consensus 17 ~~IL~~L~~~~~~~~~t~~eLA~~L--------gvs~~tV~~~L~~L~~~G~I~~~g~~~~~W 71 (77)
T 1qgp_A 17 QRILKFLEELGEGKATTAHDLSGKL--------GTPKKEINRVLYSLAKKGKLQKEAGTPPLW 71 (77)
T ss_dssp HHHHHHHHHHCSSSCEEHHHHHHHH--------CCCHHHHHHHHHHHHHHTSEEEECSSSCEE
T ss_pred HHHHHHHHHcCCCCCcCHHHHHHHH--------CcCHHHHHHHHHHHHHCCCEEecCCCCCce
Confidence 34667788888 88888665443 267789999999999999999977665443
No 115
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=48.70 E-value=17 Score=32.37 Aligned_cols=52 Identities=19% Similarity=0.105 Sum_probs=41.3
Q ss_pred ecHHHHHHHHhhcCCCCCcccHHHHHHHcCCChHHHHHHHHHhhcccccccceeeccc
Q psy14208 593 VTTFQMAVLFAWNERPLDRLSFENLLLATELPDPELRRTLWSLVAFPKIKRQILLYSE 650 (778)
Q Consensus 593 ~s~~Q~~ILl~FN~~~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~~k~k~~iL~~~~ 650 (778)
++..|..||..+... .+.+|..+|++.+|++...+.+.+..|... +++.+.+
T Consensus 33 l~~~~~~iL~~l~~~-~~~~~~~~la~~l~i~~~~vs~~l~~Le~~-----glv~r~~ 84 (147)
T 2hr3_A 33 VQFSQLVVLGAIDRL-GGDVTPSELAAAERMRSSNLAALLRELERG-----GLIVRHA 84 (147)
T ss_dssp HHHHHHHHHHHHHHT-TSCBCHHHHHHHTTCCHHHHHHHHHHHHHT-----TSEEEEC
T ss_pred CCHHHHHHHHHHHHc-CCCCCHHHHHHHhCCChhhHHHHHHHHHHC-----CCEeeCC
Confidence 467788888777641 257999999999999999999999999853 2666543
No 116
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=48.60 E-value=12 Score=33.31 Aligned_cols=51 Identities=16% Similarity=0.066 Sum_probs=41.8
Q ss_pred ecHHHHHHHHhhcCCCCCcccHHHHHHHcCCChHHHHHHHHHhhcccccccceeeccc
Q psy14208 593 VTTFQMAVLFAWNERPLDRLSFENLLLATELPDPELRRTLWSLVAFPKIKRQILLYSE 650 (778)
Q Consensus 593 ~s~~Q~~ILl~FN~~~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~~k~k~~iL~~~~ 650 (778)
++..|..||..+.. .+.+|..+|++.++++...+.+.+..|... +++.+.+
T Consensus 38 l~~~~~~iL~~l~~--~~~~~~~~la~~l~~~~~tvs~~l~~L~~~-----glv~r~~ 88 (147)
T 1z91_A 38 ITYPQYLALLLLWE--HETLTVKKMGEQLYLDSGTLTPMLKRMEQQ-----GLITRKR 88 (147)
T ss_dssp CCHHHHHHHHHHHH--HSEEEHHHHHHTTTCCHHHHHHHHHHHHHH-----TSEECCB
T ss_pred CCHHHHHHHHHHHH--CCCCCHHHHHHHHCCCcCcHHHHHHHHHHC-----CCEEecc
Confidence 47789888887766 367999999999999999999999999853 2776543
No 117
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=48.42 E-value=11 Score=33.43 Aligned_cols=28 Identities=11% Similarity=0.149 Sum_probs=24.1
Q ss_pred hcCCCCChhhHHHHHHHhhhhcccccCC
Q psy14208 741 KNMFLPSKKMIKEQIEWLIEQKYMRRDD 768 (778)
Q Consensus 741 ~~~F~p~~~~iK~~Ie~LIereyl~Rd~ 768 (778)
..+...+...|.++|..|+++|||.|..
T Consensus 58 A~~l~~s~~~V~~~l~~Le~kGlI~~~~ 85 (128)
T 2vn2_A 58 AERMTVSAAECMEMVRRLLQKGMIAIEE 85 (128)
T ss_dssp HHTSSSCHHHHHHHHHHHHHTTSSEECC
T ss_pred HHHHCcCHHHHHHHHHHHHHCCCEEEEe
Confidence 3456789999999999999999999954
No 118
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=48.41 E-value=14 Score=33.01 Aligned_cols=59 Identities=14% Similarity=0.120 Sum_probs=41.0
Q ss_pred hhhhhhhhcc-CCCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHhhhhcccccCCCCCCceEec
Q psy14208 714 QEAIIKILKM-RKRISNAQLQTELVDILKNMFLPSKKMIKEQIEWLIEQKYMRRDDDDINVFVYL 777 (778)
Q Consensus 714 ~A~IVRiMK~-~k~l~~~~L~~~v~~~l~~~F~p~~~~iK~~Ie~LIereyl~Rd~~d~~~y~Yi 777 (778)
+..|.+++-. ...++..+|...+.. .-..+...+...|+.|.++|||.|..++ ..+.|.
T Consensus 11 e~~vL~~L~~~~~~~t~~el~~~l~~----~~~~~~~Tvt~~l~rLe~kGlv~r~~~~-r~~~~~ 70 (138)
T 2g9w_A 11 ERAVMDHLWSRTEPQTVRQVHEALSA----RRDLAYTTVMAVLQRLAKKNLVLQIRDD-RAHRYA 70 (138)
T ss_dssp HHHHHHHHHTCSSCEEHHHHHHHHTT----TCCCCHHHHHHHHHHHHHTTSEEEEC----CCEEE
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHhc----cCCCCHHHHHHHHHHHHHCCCEEEEecC-CeEEEE
Confidence 4455666655 478888877766532 2235788999999999999999998754 466663
No 119
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=48.20 E-value=23 Score=31.94 Aligned_cols=43 Identities=12% Similarity=0.146 Sum_probs=36.0
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHcCCChHHHHHHHHHhhccc
Q psy14208 595 TFQMAVLFAWNERPLDRLSFENLLLATELPDPELRRTLWSLVAFP 639 (778)
Q Consensus 595 ~~Q~~ILl~FN~~~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~~ 639 (778)
..+..||.++.+ +..+|+.+|++.+|++...+.+.|..|...|
T Consensus 3 ~~~~~il~~L~~--~~~~~~~ela~~lg~s~~tv~~~l~~L~~~G 45 (150)
T 2pn6_A 3 EIDLRILKILQY--NAKYSLDEIAREIRIPKATLSYRIKKLEKDG 45 (150)
T ss_dssp HHHHHHHHHHTT--CTTSCHHHHHHHHTSCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHH--cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 456677777776 4679999999999999999999999998643
No 120
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=47.12 E-value=13 Score=33.83 Aligned_cols=50 Identities=12% Similarity=0.131 Sum_probs=41.2
Q ss_pred ecHHHHHHHHhh-cCCCCCcccHHHHHHHcCCChHHHHHHHHHhhcccccccceeecc
Q psy14208 593 VTTFQMAVLFAW-NERPLDRLSFENLLLATELPDPELRRTLWSLVAFPKIKRQILLYS 649 (778)
Q Consensus 593 ~s~~Q~~ILl~F-N~~~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~~k~k~~iL~~~ 649 (778)
++..|..||..+ .. .+.+|..+|++.+|++...+.+.+..|... +++.+.
T Consensus 45 l~~~~~~iL~~L~~~--~~~~~~~ela~~l~i~~~tvs~~l~~Le~~-----Gli~r~ 95 (160)
T 3boq_A 45 LSLAKFDAMAQLARN--PDGLSMGKLSGALKVTNGNVSGLVNRLIKD-----GMVVKA 95 (160)
T ss_dssp CCHHHHHHHHHHHHC--TTCEEHHHHHHHCSSCCSCHHHHHHHHHHH-----TSEEEC
T ss_pred CCHHHHHHHHHHHHc--CCCCCHHHHHHHHCCChhhHHHHHHHHHHC-----CCEEee
Confidence 477899998887 44 367999999999999999999999999853 277654
No 121
>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=46.98 E-value=35 Score=30.72 Aligned_cols=44 Identities=20% Similarity=0.134 Sum_probs=33.2
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHcCCChHHHHHHHHHhhcccccccceeecc
Q psy14208 597 QMAVLFAWNERPLDRLSFENLLLATELPDPELRRTLWSLVAFPKIKRQILLYS 649 (778)
Q Consensus 597 Q~~ILl~FN~~~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~~k~k~~iL~~~ 649 (778)
.+++.|.-+. +. |.++|++.+++|...|.+.|..|...| ++...
T Consensus 13 ~~L~~La~~~---~~-s~~~IA~~~~i~~~~l~kIl~~L~~aG-----lv~s~ 56 (145)
T 1xd7_A 13 HILSLISMDE---KT-SSEIIADSVNTNPVVVRRMISLLKKAD-----ILTSR 56 (145)
T ss_dssp HHHHHHHTCS---CC-CHHHHHHHHTSCHHHHHHHHHHHHHTT-----SEECC
T ss_pred HHHHHHHhCC---CC-CHHHHHHHHCcCHHHHHHHHHHHHHCC-----ceEee
Confidence 4444445443 35 999999999999999999999998543 77643
No 122
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=46.90 E-value=11 Score=32.71 Aligned_cols=56 Identities=25% Similarity=0.368 Sum_probs=40.5
Q ss_pred hhhhhccCCCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHhhhhcccccCCCCCCceEec
Q psy14208 717 IIKILKMRKRISNAQLQTELVDILKNMFLPSKKMIKEQIEWLIEQKYMRRDDDDINVFVYL 777 (778)
Q Consensus 717 IVRiMK~~k~l~~~~L~~~v~~~l~~~F~p~~~~iK~~Ie~LIereyl~Rd~~d~~~y~Yi 777 (778)
|..++...+.++..+|...+-.. ...+...+.+.|+.|.++|||+|..+| ..+.|+
T Consensus 15 vL~~l~~~~~~t~~ela~~l~~~----~~~s~~tv~~~l~~L~~~Glv~r~~~~-rr~~~~ 70 (123)
T 1okr_A 15 VMNIIWMKKYASANNIIEEIQMQ----KDWSPKTIRTLITRLYKKGFIDRKKDN-KIFQYY 70 (123)
T ss_dssp HHHHHHHHSSEEHHHHHHHHHHH----CCCCHHHHHHHHHHHHHHTSEEEEEET-TEEEEE
T ss_pred HHHHHHhCCCcCHHHHHHHHhcc----CCCcHhhHHHHHHHHHHCCCeEEEecC-CeEEEE
Confidence 34444446788888888776432 235678899999999999999998764 455554
No 123
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=46.74 E-value=12 Score=34.43 Aligned_cols=53 Identities=11% Similarity=0.050 Sum_probs=38.8
Q ss_pred ecHHHHHHHHhhcCCCCCcccHHHHHHHcCCChHHHHHHHHHhhcccccccceeeccc
Q psy14208 593 VTTFQMAVLFAWNERPLDRLSFENLLLATELPDPELRRTLWSLVAFPKIKRQILLYSE 650 (778)
Q Consensus 593 ~s~~Q~~ILl~FN~~~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~~k~k~~iL~~~~ 650 (778)
+|..|..||..+...+.+.+|..+|++.++++...+.+.+..|... +++.+.+
T Consensus 44 lt~~q~~vL~~l~~~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~-----Glv~r~~ 96 (168)
T 3u2r_A 44 LSAQQYNTLRLLRSVHPEGMATLQIADRLISRAPDITRLIDRLDDR-----GLVLRTR 96 (168)
T ss_dssp CCHHHHHHHHHHHHHTTSCEEHHHHHHHC---CTHHHHHHHHHHHT-----TSEEEEE
T ss_pred CCHHHHHHHHHHHhcCCCCcCHHHHHHHHCCChhhHHHHHHHHHHC-----CCEeecC
Confidence 4677888888776521257999999999999999999999999853 2777653
No 124
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=45.96 E-value=21 Score=28.39 Aligned_cols=51 Identities=8% Similarity=0.100 Sum_probs=40.6
Q ss_pred ecHHHHHHHHhhcCCCCCcccHHHHHHHcC----CChHHHHHHHHHhhcccccccceeeccc
Q psy14208 593 VTTFQMAVLFAWNERPLDRLSFENLLLATE----LPDPELRRTLWSLVAFPKIKRQILLYSE 650 (778)
Q Consensus 593 ~s~~Q~~ILl~FN~~~~~~~t~~ei~~~t~----i~~~~l~~~L~sL~~~~k~k~~iL~~~~ 650 (778)
+|..|..||..+-+ .+.+|..+|++.++ ++...+.+.|..|... +++.+.+
T Consensus 7 lt~~e~~vL~~L~~--~~~~t~~ei~~~l~~~~~~s~~Tv~~~l~rL~~k-----Glv~r~~ 61 (82)
T 1p6r_A 7 ISDAELEVMKVIWK--HSSINTNEVIKELSKTSTWSPKTIQTMLLRLIKK-----GALNHHK 61 (82)
T ss_dssp CCHHHHHHHHHHHT--SSSEEHHHHHHHHHHHSCCCHHHHHHHHHHHHHT-----TSEEEEE
T ss_pred CCHHHHHHHHHHHc--CCCCCHHHHHHHHhhcCCccHHHHHHHHHHHHHC-----CCeEEEe
Confidence 57888888887765 36799999999986 6889999999999863 2676543
No 125
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=44.80 E-value=16 Score=35.30 Aligned_cols=51 Identities=12% Similarity=0.016 Sum_probs=41.9
Q ss_pred ecHHHHHHHHhhcCCCCCcccHHHHHHHcCCChHHHHHHHHHhhcccccccceeeccc
Q psy14208 593 VTTFQMAVLFAWNERPLDRLSFENLLLATELPDPELRRTLWSLVAFPKIKRQILLYSE 650 (778)
Q Consensus 593 ~s~~Q~~ILl~FN~~~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~~k~k~~iL~~~~ 650 (778)
+|..|..||..+.. .+.+|..+|++.++++...+.+.|..|... +++.+.+
T Consensus 46 Lt~~q~~iL~~L~~--~~~~t~~eLa~~l~i~~stvs~~l~~Le~~-----GlV~r~~ 96 (207)
T 2fxa_A 46 LNINEHHILWIAYQ--LNGASISEIAKFGVMHVSTAFNFSKKLEER-----GYLRFSK 96 (207)
T ss_dssp CCHHHHHHHHHHHH--HTSEEHHHHHHHTTCCHHHHHHHHHHHHHH-----TSEEEEC
T ss_pred CCHHHHHHHHHHHH--CCCcCHHHHHHHHCCCHHHHHHHHHHHHHC-----CCEEEec
Confidence 47889888887765 367999999999999999999999999853 2777654
No 126
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=44.50 E-value=19 Score=28.93 Aligned_cols=40 Identities=13% Similarity=0.044 Sum_probs=32.3
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHcCCChH-HHHHHHHHhhc
Q psy14208 596 FQMAVLFAWNERPLDRLSFENLLLATELPDP-ELRRTLWSLVA 637 (778)
Q Consensus 596 ~Q~~ILl~FN~~~~~~~t~~ei~~~t~i~~~-~l~~~L~sL~~ 637 (778)
.+--||.+... .+..|..+|++.+||+.. .+.++|..|..
T Consensus 12 ~~~~IL~~Lk~--~g~~ta~eiA~~Lgit~~~aVr~hL~~Le~ 52 (79)
T 1xmk_A 12 IKEKICDYLFN--VSDSSALNLAKNIGLTKARDINAVLIDMER 52 (79)
T ss_dssp HHHHHHHHHHH--TCCEEHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--cCCcCHHHHHHHcCCCcHHHHHHHHHHHHH
Confidence 34455555544 368999999999999998 99999999985
No 127
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=44.01 E-value=26 Score=31.44 Aligned_cols=43 Identities=19% Similarity=0.308 Sum_probs=35.7
Q ss_pred cHHHHHHHHhhcCCCCCcccHHHHHHHcCCChHHHHHHHHHhhcc
Q psy14208 594 TTFQMAVLFAWNERPLDRLSFENLLLATELPDPELRRTLWSLVAF 638 (778)
Q Consensus 594 s~~Q~~ILl~FN~~~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~ 638 (778)
+..+-.||.++.+ +..+|+.+|++.+|++...+.+.|..|...
T Consensus 4 d~~d~~il~~L~~--~~~~s~~ela~~lg~s~~tv~~~l~~L~~~ 46 (144)
T 2cfx_A 4 DQIDLNIIEELKK--DSRLSMRELGRKIKLSPPSVTERVRQLESF 46 (144)
T ss_dssp CHHHHHHHHHHHH--CSCCCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHH--cCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 4556677776665 367999999999999999999999999864
No 128
>2g7u_A Transcriptional regulator; ICLR family, structural genomics, PSI, protein structure initiative, midwest center for struc genomics; 2.30A {Rhodococcus SP}
Probab=43.84 E-value=31 Score=34.41 Aligned_cols=57 Identities=21% Similarity=0.304 Sum_probs=43.5
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHcCCChHHHHHHHHHhhcccccccceeecccCCCCCCCCCCCCeEEEcccc
Q psy14208 597 QMAVLFAWNERPLDRLSFENLLLATELPDPELRRTLWSLVAFPKIKRQILLYSEEVQSPKDFTEHTSFWINQEF 670 (778)
Q Consensus 597 Q~~ILl~FN~~~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~~k~k~~iL~~~~~~~~~~~~~~~~~f~lN~~F 670 (778)
...||.+|... ...+|+.||++.+|++...+.+.|..|...+ ++.+. +..|.+...+
T Consensus 16 ~l~iL~~l~~~-~~~~~~~eia~~~gl~~stv~r~l~~L~~~G-----~v~~~-----------~~~Y~Lg~~~ 72 (257)
T 2g7u_A 16 GFAVLLAFDAQ-RPNPTLAELATEAGLSRPAVRRILLTLQKLG-----YVAGS-----------GGRWSLTPRV 72 (257)
T ss_dssp HHHHHHTCSSS-CSSCBHHHHHHHHTCCHHHHHHHHHHHHHTT-----SEEEE-----------TTEEEECGGG
T ss_pred HHHHHHHHHhC-CCCCCHHHHHHHHCcCHHHHHHHHHHHHHCC-----CEEeC-----------CCEEEEcHHH
Confidence 34577788753 3579999999999999999999999998643 67653 2467776654
No 129
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=43.72 E-value=27 Score=34.66 Aligned_cols=57 Identities=7% Similarity=0.022 Sum_probs=42.4
Q ss_pred HHHHHhhcCCCCCcccHHHHHHHcCCChHHHHHHHHHhhcccccccceeecccCCCCCCCCCCCCeEEEcccc
Q psy14208 598 MAVLFAWNERPLDRLSFENLLLATELPDPELRRTLWSLVAFPKIKRQILLYSEEVQSPKDFTEHTSFWINQEF 670 (778)
Q Consensus 598 ~~ILl~FN~~~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~~k~k~~iL~~~~~~~~~~~~~~~~~f~lN~~F 670 (778)
..||.+|.+. ...+|+.||++.+|++...+.+.|..|...+ ++.+. .+..|.+...+
T Consensus 11 l~iL~~l~~~-~~~~~~~ela~~~gl~~stv~r~l~~L~~~G-----~v~~~----------~~~~Y~lg~~~ 67 (249)
T 1mkm_A 11 FEILDFIVKN-PGDVSVSEIAEKFNMSVSNAYKYMVVLEEKG-----FVLRK----------KDKRYVPGYKL 67 (249)
T ss_dssp HHHHHHHHHC-SSCBCHHHHHHHTTCCHHHHHHHHHHHHHTT-----SEEEC----------TTSCEEECTHH
T ss_pred HHHHHHHHhC-CCCCCHHHHHHHHCcCHHHHHHHHHHHHHCC-----cEEEC----------CCCcEEECHHH
Confidence 4577777653 2469999999999999999999999998643 67653 23467776543
No 130
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=43.06 E-value=27 Score=34.44 Aligned_cols=40 Identities=18% Similarity=0.224 Sum_probs=33.0
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHcCCChHHHHHHHHHhhcc
Q psy14208 596 FQMAVLFAWNERPLDRLSFENLLLATELPDPELRRTLWSLVAF 638 (778)
Q Consensus 596 ~Q~~ILl~FN~~~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~ 638 (778)
.-+.|+.+... ++.|.++|++.+|++..++..+|..|...
T Consensus 166 ~~~~l~~~l~~---~~~t~~~la~~~~l~~~~V~~~l~~L~~~ 205 (232)
T 2qlz_A 166 QLAILHYLLLN---GRATVEELSDRLNLKEREVREKISEMARF 205 (232)
T ss_dssp HHHHHHHHHHS---SEEEHHHHHHHHTCCHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHhc---CCCCHHHHHHHhCcCHHHHHHHHHHHHhc
Confidence 34555555654 68999999999999999999999999854
No 131
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=43.02 E-value=24 Score=32.84 Aligned_cols=47 Identities=13% Similarity=0.160 Sum_probs=38.6
Q ss_pred EEecHHHHHHHHhhcCCCCCcccHHHHHHHcCCChHHHHHHHHHhhccc
Q psy14208 591 LDVTTFQMAVLFAWNERPLDRLSFENLLLATELPDPELRRTLWSLVAFP 639 (778)
Q Consensus 591 l~~s~~Q~~ILl~FN~~~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~~ 639 (778)
..++..+..||.++.. +..+|+.+|++.+|++...+.+.|..|...|
T Consensus 13 ~~ld~~d~~IL~~L~~--~~~~s~~eLA~~lglS~~tv~~~l~~L~~~G 59 (171)
T 2ia0_A 13 IHLDDLDRNILRLLKK--DARLTISELSEQLKKPESTIHFRIKKLQERG 59 (171)
T ss_dssp -CCCHHHHHHHHHHHH--CTTCCHHHHHHHHTSCHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHH--cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 3456777788887776 3679999999999999999999999998643
No 132
>2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, structure initiative, midwest center for structural genomic transcription; 2.10A {Rhodococcus SP}
Probab=42.95 E-value=30 Score=34.70 Aligned_cols=56 Identities=25% Similarity=0.471 Sum_probs=42.8
Q ss_pred HHHHHhhcCCCCCcccHHHHHHHcCCChHHHHHHHHHhhcccccccceeecccCCCCCCCCCCCCeEEEcccc
Q psy14208 598 MAVLFAWNERPLDRLSFENLLLATELPDPELRRTLWSLVAFPKIKRQILLYSEEVQSPKDFTEHTSFWINQEF 670 (778)
Q Consensus 598 ~~ILl~FN~~~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~~k~k~~iL~~~~~~~~~~~~~~~~~f~lN~~F 670 (778)
..||.+|... ...+|+.||++.+|++...+.+.|..|...+ ++.+. +..|.+...+
T Consensus 24 l~iL~~l~~~-~~~~~~~eia~~~gl~~stv~r~l~tL~~~G-----~v~~~-----------~~~Y~Lg~~~ 79 (265)
T 2ia2_A 24 LAVIRCFDHR-NQRRTLSDVARATDLTRATARRFLLTLVELG-----YVATD-----------GSAFWLTPRV 79 (265)
T ss_dssp HHHHHTCCSS-CSSEEHHHHHHHHTCCHHHHHHHHHHHHHHT-----SEEES-----------SSEEEECGGG
T ss_pred HHHHHHHHhC-CCCCCHHHHHHHHCcCHHHHHHHHHHHHHCC-----CEEec-----------CCEEEEcHHH
Confidence 3577788653 3679999999999999999999999998632 67653 2467776554
No 133
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=42.63 E-value=23 Score=28.60 Aligned_cols=53 Identities=17% Similarity=0.236 Sum_probs=40.2
Q ss_pred hhhhhhhhccCC---CCChHHHHHHHHHHHhcCCCCChhhHHHHHHHhhhhcccccCCCCCCce
Q psy14208 714 QEAIIKILKMRK---RISNAQLQTELVDILKNMFLPSKKMIKEQIEWLIEQKYMRRDDDDINVF 774 (778)
Q Consensus 714 ~A~IVRiMK~~k---~l~~~~L~~~v~~~l~~~F~p~~~~iK~~Ie~LIereyl~Rd~~d~~~y 774 (778)
+-.|..+|+... .++..+|-.++ ..+...|.++|..|.+.|+|++.+..+..|
T Consensus 12 ~~~IL~~L~~~~pg~~~t~~eLA~~L--------gvsr~tV~~~L~~Le~~G~I~~~g~~~~~W 67 (81)
T 1qbj_A 12 EQRILKFLEELGEGKATTAHDLSGKL--------GTPKKEINRVLYSLAKKGKLQKEAGTPPLW 67 (81)
T ss_dssp HHHHHHHHHHHCTTCCBCHHHHHHHH--------TCCHHHHHHHHHHHHHTTSEEEESSSSCEE
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHH--------CcCHHHHHHHHHHHHHCCCEEecCCCCCee
Confidence 344667788877 88888666443 267789999999999999999876655443
No 134
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=41.48 E-value=38 Score=25.92 Aligned_cols=40 Identities=8% Similarity=0.046 Sum_probs=32.4
Q ss_pred ecHHHHHHHHhhcCCCCCcccHHHHHHHcCCChHHHHHHHHHhh
Q psy14208 593 VTTFQMAVLFAWNERPLDRLSFENLLLATELPDPELRRTLWSLV 636 (778)
Q Consensus 593 ~s~~Q~~ILl~FN~~~~~~~t~~ei~~~t~i~~~~l~~~L~sL~ 636 (778)
+|.-|..|+.++- .+.|.++|++.+|++...+..++..+.
T Consensus 12 L~~~e~~il~~~~----~g~s~~eIA~~l~is~~tV~~~~~~~~ 51 (74)
T 1fse_A 12 LTKREREVFELLV----QDKTTKEIASELFISEKTVRNHISNAM 51 (74)
T ss_dssp CCHHHHHHHHHHT----TTCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH----cCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4667777777763 357999999999999999998887765
No 135
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=40.94 E-value=35 Score=27.07 Aligned_cols=44 Identities=14% Similarity=0.163 Sum_probs=32.9
Q ss_pred hhhhhhccCCCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHhhhhcccccC
Q psy14208 716 AIIKILKMRKRISNAQLQTELVDILKNMFLPSKKMIKEQIEWLIEQKYMRRD 767 (778)
Q Consensus 716 ~IVRiMK~~k~l~~~~L~~~v~~~l~~~F~p~~~~iK~~Ie~LIereyl~Rd 767 (778)
.|.+.+...+.++..||-..+ ..+...+.+.+..|.+.|+|++.
T Consensus 4 ~Il~~L~~~~~~s~~eLa~~l--------gvs~~tv~r~L~~L~~~GlI~~~ 47 (81)
T 2htj_A 4 EILEFLNRHNGGKTAEIAEAL--------AVTDYQARYYLLLLEKAGMVQRS 47 (81)
T ss_dssp HHHHHHHHSCCCCHHHHHHHH--------TSCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHcCCCCHHHHHHHH--------CcCHHHHHHHHHHHHHCCCEEEe
Confidence 355666666778877665433 35788899999999999999954
No 136
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=40.88 E-value=26 Score=31.64 Aligned_cols=44 Identities=9% Similarity=0.080 Sum_probs=36.9
Q ss_pred ecHHHHHHHHhhcCCCCCcccHHHHHHHcCCChHHHHHHHHHhhcc
Q psy14208 593 VTTFQMAVLFAWNERPLDRLSFENLLLATELPDPELRRTLWSLVAF 638 (778)
Q Consensus 593 ~s~~Q~~ILl~FN~~~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~ 638 (778)
++..+..||.++.+ +..+|+.+|++.+|++...+.+.|..|...
T Consensus 6 ld~~d~~il~~L~~--~~~~s~~ela~~lg~s~~tv~~~l~~L~~~ 49 (152)
T 2cg4_A 6 IDNLDRGILEALMG--NARTAYAELAKQFGVSPETIHVRVEKMKQA 49 (152)
T ss_dssp CCHHHHHHHHHHHH--CTTSCHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHH--cCCCCHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 45667778877766 367999999999999999999999999864
No 137
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=40.82 E-value=27 Score=31.80 Aligned_cols=47 Identities=9% Similarity=0.037 Sum_probs=37.8
Q ss_pred cHHHHHHHHhhcCCCCCcccHHHHHHHcCCChHHHHHHHHHhhcccccccceeec
Q psy14208 594 TTFQMAVLFAWNERPLDRLSFENLLLATELPDPELRRTLWSLVAFPKIKRQILLY 648 (778)
Q Consensus 594 s~~Q~~ILl~FN~~~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~~k~k~~iL~~ 648 (778)
+.....||.++.+ +.+|+.+|++.+|++...+.++|..|...| ++..
T Consensus 57 ~p~R~~IL~~L~~---~~~t~~eLa~~lgls~stvs~hL~~L~~aG-----lV~~ 103 (151)
T 3f6v_A 57 EPTRRRLVQLLTS---GEQTVNNLAAHFPASRSAISQHLRVLTEAG-----LVTP 103 (151)
T ss_dssp SHHHHHHHHHGGG---CCEEHHHHHTTSSSCHHHHHHHHHHHHHTT-----SEEE
T ss_pred CHHHHHHHHHHHh---CCCCHHHHHHHHCcCHHHHHHHHHHHHHCC-----CEEE
Confidence 3556677776664 569999999999999999999999998643 6654
No 138
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=40.75 E-value=29 Score=34.62 Aligned_cols=53 Identities=13% Similarity=0.165 Sum_probs=42.4
Q ss_pred ecHHHHHHHHhhcCCCCCcccHHHHHHHcCCChHHHHHHHHHhhcccccccceeeccc
Q psy14208 593 VTTFQMAVLFAWNERPLDRLSFENLLLATELPDPELRRTLWSLVAFPKIKRQILLYSE 650 (778)
Q Consensus 593 ~s~~Q~~ILl~FN~~~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~~k~k~~iL~~~~ 650 (778)
+|..|..||......+.+.+|..+|++.++++...+.+.+..|... +++.+.+
T Consensus 156 Lt~~q~~vL~~L~~~~~~~~t~~eLa~~l~i~~~tvt~~v~rLe~~-----GlV~R~~ 208 (250)
T 1p4x_A 156 LSFVEFTILAIITSQNKNIVLLKDLIETIHHKYPQTVRALNNLKKQ-----GYLIKER 208 (250)
T ss_dssp SCHHHHHHHHHHHTTTTCCEEHHHHHHHSSSCHHHHHHHHHHHHHH-----TSSEEEE
T ss_pred CCHHHHHHHHHHHhCCCCCcCHHHHHHHHCCChhhHHHHHHHHHHC-----CCEEeeC
Confidence 4778999988776532235999999999999999999999999852 3777664
No 139
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=40.74 E-value=28 Score=31.34 Aligned_cols=44 Identities=16% Similarity=0.219 Sum_probs=36.9
Q ss_pred ecHHHHHHHHhhcCCCCCcccHHHHHHHcCCChHHHHHHHHHhhcc
Q psy14208 593 VTTFQMAVLFAWNERPLDRLSFENLLLATELPDPELRRTLWSLVAF 638 (778)
Q Consensus 593 ~s~~Q~~ILl~FN~~~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~ 638 (778)
++..+-.||.++.+ +..+|+.+|++.+|++...+.+.|..|...
T Consensus 7 ld~~d~~il~~L~~--~~~~s~~ela~~lg~s~~tv~~~l~~L~~~ 50 (151)
T 2dbb_A 7 LDRVDMQLVKILSE--NSRLTYRELADILNTTRQRIARRIDKLKKL 50 (151)
T ss_dssp CCHHHHHHHHHHHH--CTTCCHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH--cCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 45567778877776 467999999999999999999999999853
No 140
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=40.47 E-value=31 Score=25.71 Aligned_cols=37 Identities=8% Similarity=0.085 Sum_probs=29.3
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHc-----CCChHHHHHHHHHh
Q psy14208 597 QMAVLFAWNERPLDRLSFENLLLAT-----ELPDPELRRTLWSL 635 (778)
Q Consensus 597 Q~~ILl~FN~~~~~~~t~~ei~~~t-----~i~~~~l~~~L~sL 635 (778)
+..|+.+++. ++.+|.++|++.+ +++...+.+.|..+
T Consensus 7 ~~~i~~ll~~--~~~~t~~el~~~l~~~~~~vs~~Tv~R~L~~l 48 (64)
T 2p5k_A 7 HIKIREIITS--NEIETQDELVDMLKQDGYKVTQATVSRDIKEL 48 (64)
T ss_dssp HHHHHHHHHH--SCCCSHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHc--CCCCCHHHHHHHHHHhCCCcCHHHHHHHHHHc
Confidence 4445555555 3679999999999 99999999999855
No 141
>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A
Probab=40.06 E-value=36 Score=30.20 Aligned_cols=47 Identities=13% Similarity=0.126 Sum_probs=36.3
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHc-CCChHHHHHHHHHhhcccccccceeeccc
Q psy14208 596 FQMAVLFAWNERPLDRLSFENLLLAT-ELPDPELRRTLWSLVAFPKIKRQILLYSE 650 (778)
Q Consensus 596 ~Q~~ILl~FN~~~~~~~t~~ei~~~t-~i~~~~l~~~L~sL~~~~k~k~~iL~~~~ 650 (778)
..+.||..... +..++.||++.+ ||+...|.+.|..|...| ++.+.+
T Consensus 27 W~l~IL~~L~~---g~~rf~eL~~~l~gIs~~~Ls~~L~~Le~~G-----LV~R~~ 74 (131)
T 4a5n_A 27 WKGILFYHMID---GKKRFNEFRRICPSITQRMLTLQLRELEADG-----IVHREV 74 (131)
T ss_dssp SHHHHHHHHTT---SCBCHHHHHHHCTTSCHHHHHHHHHHHHHTT-----SEEEEE
T ss_pred CHHHHHHHHhc---CCcCHHHHHHHhcccCHHHHHHHHHHHHHCC-----CEEEEe
Confidence 34555555443 579999999999 999999999999998643 777653
No 142
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=38.34 E-value=42 Score=28.24 Aligned_cols=45 Identities=13% Similarity=0.084 Sum_probs=34.6
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHc-CCChHHHHHHHHHhhcccccccceeecc
Q psy14208 597 QMAVLFAWNERPLDRLSFENLLLAT-ELPDPELRRTLWSLVAFPKIKRQILLYS 649 (778)
Q Consensus 597 Q~~ILl~FN~~~~~~~t~~ei~~~t-~i~~~~l~~~L~sL~~~~k~k~~iL~~~ 649 (778)
...||....+ +.+++.+|++.+ |++...+.+.|..|...| ++.+.
T Consensus 16 ~~~IL~~L~~---~~~~~~eLa~~l~~is~~tls~~L~~Le~~G-----lI~r~ 61 (107)
T 2hzt_A 16 KXVILXHLTH---GKKRTSELKRLMPNITQKMLTQQLRELEADG-----VINRI 61 (107)
T ss_dssp HHHHHHHHTT---CCBCHHHHHHHCTTSCHHHHHHHHHHHHHTT-----SEEEE
T ss_pred HHHHHHHHHh---CCCCHHHHHHHhcCCCHHHHHHHHHHHHHCC-----CEEEe
Confidence 3445544433 568999999999 999999999999998633 77654
No 143
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=38.24 E-value=43 Score=26.72 Aligned_cols=40 Identities=8% Similarity=0.107 Sum_probs=32.2
Q ss_pred ecHHHHHHHHhhcCCCCCcccHHHHHHHcCCChHHHHHHHHHhh
Q psy14208 593 VTTFQMAVLFAWNERPLDRLSFENLLLATELPDPELRRTLWSLV 636 (778)
Q Consensus 593 ~s~~Q~~ILl~FN~~~~~~~t~~ei~~~t~i~~~~l~~~L~sL~ 636 (778)
+|.-|.-|+.++- .++|.+||++.+|++...++.++....
T Consensus 22 Lt~~e~~vl~l~~----~g~s~~eIA~~l~is~~tV~~~l~r~~ 61 (82)
T 1je8_A 22 LTPRERDILKLIA----QGLPNKMIARRLDITESTVKVHVKHML 61 (82)
T ss_dssp SCHHHHHHHHHHT----TTCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH----cCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 4666777776663 458999999999999999998887665
No 144
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=38.21 E-value=26 Score=31.02 Aligned_cols=43 Identities=12% Similarity=0.132 Sum_probs=35.3
Q ss_pred cHHHHHHHHhhcCCCCCcccHHHHHHHcCCChHHHHHHHHHhhcc
Q psy14208 594 TTFQMAVLFAWNERPLDRLSFENLLLATELPDPELRRTLWSLVAF 638 (778)
Q Consensus 594 s~~Q~~ILl~FN~~~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~ 638 (778)
+..+..||..+.. ++.+|+.+|++.+|++...+.+.|..|...
T Consensus 3 d~~~~~il~~L~~--~~~~~~~ela~~lg~s~~tv~~~l~~L~~~ 45 (141)
T 1i1g_A 3 DERDKIILEILEK--DARTPFTEIAKKLGISETAVRKRVKALEEK 45 (141)
T ss_dssp CSHHHHHHHHHHH--CTTCCHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH--cCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 3456677777765 367899999999999999999999999853
No 145
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=38.01 E-value=20 Score=28.66 Aligned_cols=55 Identities=7% Similarity=0.057 Sum_probs=37.1
Q ss_pred hhhhhhhhhhhhhccC--CCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHhhhhcccccCCCCC
Q psy14208 709 RILRVQEAIIKILKMR--KRISNAQLQTELVDILKNMFLPSKKMIKEQIEWLIEQKYMRRDDDDI 771 (778)
Q Consensus 709 R~~~i~A~IVRiMK~~--k~l~~~~L~~~v~~~l~~~F~p~~~~iK~~Ie~LIereyl~Rd~~d~ 771 (778)
|...|-..|-+-++.+ ...+..||...+ ..++..|.+-|..|-++|||+|+..-+
T Consensus 5 r~~~IL~~I~~~i~~~~g~~psv~EIa~~l--------gvS~~TVrr~L~~Le~kG~I~R~~ggr 61 (77)
T 2jt1_A 5 IVTKIISIVQERQNMDDGAPVKTRDIADAA--------GLSIYQVRLYLEQLHDVGVLEKVNAGK 61 (77)
T ss_dssp HHHHHHHHHHHHHHHHTTSCEEHHHHHHHH--------TCCHHHHHHHHHHHHHTTSEEEESCSS
T ss_pred HHHHHHHHHHHHHhhccCCCcCHHHHHHHH--------CCCHHHHHHHHHHHHHCCcEEecCCCC
Confidence 4444444555544443 667777655433 236777999999999999999987543
No 146
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=37.98 E-value=26 Score=34.93 Aligned_cols=53 Identities=13% Similarity=0.139 Sum_probs=43.0
Q ss_pred ecHHHHHHHHhhcCCCCCcccHHHHHHHcCCChHHHHHHHHHhhcccccccceeeccc
Q psy14208 593 VTTFQMAVLFAWNERPLDRLSFENLLLATELPDPELRRTLWSLVAFPKIKRQILLYSE 650 (778)
Q Consensus 593 ~s~~Q~~ILl~FN~~~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~~k~k~~iL~~~~ 650 (778)
+|..|..||+.+.+.+.+++|..+|++.++++...+.+.|..|... +++.+.+
T Consensus 32 lt~~q~~vL~~L~~~~~~~~~~~el~~~l~~~~~t~t~~l~rLe~~-----G~i~R~~ 84 (250)
T 1p4x_A 32 MTIKEFILLTYLFHQQENTLPFKKIVSDLCYKQSDLVQHIKVLVKH-----SYISKVR 84 (250)
T ss_dssp SCHHHHHHHHHHHSCSCSEEEHHHHHHHSSSCGGGTHHHHHHHHHT-----TSCEEEE
T ss_pred CCHHHHHHHHHHHhcCCCCcCHHHHHHHHCCCHhhHHHHHHHHHHC-----CCEEecC
Confidence 5788999998886532357999999999999999999999999853 2777654
No 147
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=37.93 E-value=51 Score=31.62 Aligned_cols=67 Identities=12% Similarity=0.122 Sum_probs=45.7
Q ss_pred cHHHHHHHHhhcCCCCCcccHHHHHHHcCCChHHHHHHHHHhhcccccccceeecccCCCCCCCCCCCCeEEEcccc
Q psy14208 594 TTFQMAVLFAWNERPLDRLSFENLLLATELPDPELRRTLWSLVAFPKIKRQILLYSEEVQSPKDFTEHTSFWINQEF 670 (778)
Q Consensus 594 s~~Q~~ILl~FN~~~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~~k~k~~iL~~~~~~~~~~~~~~~~~f~lN~~F 670 (778)
+..+..||.++.+ +++|+.+|++.+|++...+.++|..|...| ++...... .+.+ .....|+++...
T Consensus 14 ~~~rl~IL~~L~~---~~~s~~eLa~~l~is~stvs~hLk~Le~~G-----LV~~~~~~-~~~g-~~~~~Y~Lt~~~ 80 (202)
T 2p4w_A 14 NETRRRILFLLTK---RPYFVSELSRELGVGQKAVLEHLRILEEAG-----LIESRVEK-IPRG-RPRKYYMIKKGL 80 (202)
T ss_dssp SHHHHHHHHHHHH---SCEEHHHHHHHHTCCHHHHHHHHHHHHHTT-----SEEEEECC-BTTB-CCCEEEEECTTE
T ss_pred CHHHHHHHHHHHh---CCCCHHHHHHHHCcCHHHHHHHHHHHHHCC-----ceEEEeec-cCCC-CceEEEEEChHH
Confidence 4556677766654 579999999999999999999999998643 77654321 0000 133467766544
No 148
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=37.76 E-value=35 Score=31.19 Aligned_cols=45 Identities=20% Similarity=0.118 Sum_probs=36.8
Q ss_pred ecHHHHHHHHhhcCCCCCcccHHHHHHHcCCChHHHHHHHHHhhccc
Q psy14208 593 VTTFQMAVLFAWNERPLDRLSFENLLLATELPDPELRRTLWSLVAFP 639 (778)
Q Consensus 593 ~s~~Q~~ILl~FN~~~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~~ 639 (778)
++..+..||.++.+ +..+|+.+|++.+|++...+.+.|..|...|
T Consensus 8 ld~~~~~il~~L~~--~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G 52 (162)
T 2p5v_A 8 LDKTDIKILQVLQE--NGRLTNVELSERVALSPSPCLRRLKQLEDAG 52 (162)
T ss_dssp CCHHHHHHHHHHHH--CTTCCHHHHHHHHTSCHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHH--cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 45566677777765 3679999999999999999999999998643
No 149
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=37.15 E-value=19 Score=31.10 Aligned_cols=50 Identities=10% Similarity=0.023 Sum_probs=40.5
Q ss_pred ecHHHHHHHHhhcCCCCCcccHHHHHHHcC----CChHHHHHHHHHhhcccccccceeecc
Q psy14208 593 VTTFQMAVLFAWNERPLDRLSFENLLLATE----LPDPELRRTLWSLVAFPKIKRQILLYS 649 (778)
Q Consensus 593 ~s~~Q~~ILl~FN~~~~~~~t~~ei~~~t~----i~~~~l~~~L~sL~~~~k~k~~iL~~~ 649 (778)
+|..|..||..+.+ .+.+|..+|++.++ ++...+.+.|..|... +++.+.
T Consensus 8 lt~~~~~vL~~l~~--~~~~t~~ela~~l~~~~~~s~~tv~~~l~~L~~~-----Glv~r~ 61 (123)
T 1okr_A 8 ISSAEWEVMNIIWM--KKYASANNIIEEIQMQKDWSPKTIRTLITRLYKK-----GFIDRK 61 (123)
T ss_dssp CCHHHHHHHHHHHH--HSSEEHHHHHHHHHHHCCCCHHHHHHHHHHHHHH-----TSEEEE
T ss_pred CCHHHHHHHHHHHh--CCCcCHHHHHHHHhccCCCcHhhHHHHHHHHHHC-----CCeEEE
Confidence 57888888887765 36799999999998 7899999999999852 266654
No 150
>3omy_A Protein TRAM; DNA binding protein, dimer, bacterial conjugation, ribbon-HE helix, transcriptional repressor, DNA; 1.30A {Escherichia coli} SCOP: a.55.1.0
Probab=37.08 E-value=32 Score=24.97 Aligned_cols=42 Identities=14% Similarity=0.245 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHhcCCcCChHhHHHHHHHHHhhcCCCCchhhhhHH
Q psy14208 155 KQRLQDSAMKLVQSERNGEAFDSQLVIGVRESYVNLCSNPEDKLQIYRE 203 (778)
Q Consensus 155 ~~~l~~~ll~~I~~~R~g~~id~~~i~~v~~~~~~l~~~~~~~~~~Y~~ 203 (778)
++.+.+.+-+++...|.... ..-.+.++..||++|| +.+|+-
T Consensus 9 s~~v~~~I~~iVe~r~qeGA-~dvs~Ssv~smLleLG------LrVYe~ 50 (52)
T 3omy_A 9 NNNVYEQITDLVTIRKQEGI-EEASLSNVSSMLLELG------LRVYMI 50 (52)
T ss_dssp CHHHHHHHHHHHHHHHHTTC-TTCCHHHHHHHHHHHH------HHHHHH
T ss_pred chHHHHHHHHHHHHHHHcCc-ccccHHHHHHHHHHhh------hhhhhc
Confidence 34555666667777776544 3334668888999998 678863
No 151
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=36.93 E-value=42 Score=28.56 Aligned_cols=47 Identities=11% Similarity=0.216 Sum_probs=35.2
Q ss_pred HHHHHHHHhhcCCCCCccc--HHHHHHHc-CCChHHHHHHHHHhhcccccccceeecc
Q psy14208 595 TFQMAVLFAWNERPLDRLS--FENLLLAT-ELPDPELRRTLWSLVAFPKIKRQILLYS 649 (778)
Q Consensus 595 ~~Q~~ILl~FN~~~~~~~t--~~ei~~~t-~i~~~~l~~~L~sL~~~~k~k~~iL~~~ 649 (778)
.....||....+ +..+ +.||++.+ |++...+.++|..|...| ++.+.
T Consensus 27 ~wrl~IL~~L~~---g~~~~~~~eL~~~l~gis~~~ls~~L~~Le~~G-----lV~r~ 76 (111)
T 3df8_A 27 KYTMLIISVLGN---GSTRQNFNDIRSSIPGISSTILSRRIKDLIDSG-----LVERR 76 (111)
T ss_dssp TTHHHHHHHHTS---SSSCBCHHHHHHTSTTCCHHHHHHHHHHHHHTT-----SEEEE
T ss_pred ccHHHHHHHHhc---CCCCCCHHHHHHHccCCCHHHHHHHHHHHHHCC-----CEEEe
Confidence 344556655544 3445 99999999 999999999999998643 77754
No 152
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=36.73 E-value=16 Score=32.74 Aligned_cols=52 Identities=12% Similarity=0.251 Sum_probs=34.5
Q ss_pred hhhhhhhhhccCCCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHhhhhccccc----CCCCCCc
Q psy14208 713 VQEAIIKILKMRKRISNAQLQTELVDILKNMFLPSKKMIKEQIEWLIEQKYMRR----DDDDINV 773 (778)
Q Consensus 713 i~A~IVRiMK~~k~l~~~~L~~~v~~~l~~~F~p~~~~iK~~Ie~LIereyl~R----d~~d~~~ 773 (778)
-+..|...+ ..+.++..+|-..+ ..+.+.+-+.|+.|.++|||+| ++.|+..
T Consensus 39 ~q~~iL~~l-~~~~~t~~eLa~~l--------~~~~~~vs~~l~~Le~~Glv~r~~~~~~~D~R~ 94 (151)
T 3kp7_A 39 EQSHVLNML-SIEALTVGQITEKQ--------GVNKAAVSRRVKKLLNAELVKLEKPDSNTDQRL 94 (151)
T ss_dssp HHHHHHHHH-HHSCBCHHHHHHHH--------CSCSSHHHHHHHHHHHTTSEEC-----------
T ss_pred HHHHHHHHH-HcCCcCHHHHHHHH--------CCCHHHHHHHHHHHHHCCCEEeeCCCCCCCCCe
Confidence 344566666 77888888776544 2566789999999999999998 6676543
No 153
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=36.64 E-value=22 Score=29.53 Aligned_cols=49 Identities=18% Similarity=0.346 Sum_probs=36.7
Q ss_pred hhhhhhhhhccCCCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHhhhhcccccCCC
Q psy14208 713 VQEAIIKILKMRKRISNAQLQTELVDILKNMFLPSKKMIKEQIEWLIEQKYMRRDDD 769 (778)
Q Consensus 713 i~A~IVRiMK~~k~l~~~~L~~~v~~~l~~~F~p~~~~iK~~Ie~LIereyl~Rd~~ 769 (778)
.+..|...+...+.++..+|...+ ..+...+-+.|..|.++|||.|..+
T Consensus 21 ~~~~il~~l~~~~~~s~~ela~~l--------~is~~tv~~~l~~L~~~glv~~~~~ 69 (109)
T 1sfx_A 21 SDVRIYSLLLERGGMRVSEIAREL--------DLSARFVRDRLKVLLKRGFVRREIV 69 (109)
T ss_dssp HHHHHHHHHHHHCCBCHHHHHHHH--------TCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHH--------CCCHHHHHHHHHHHHHCCCEEEEee
Confidence 345566666666778887765444 3678999999999999999999643
No 154
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=36.60 E-value=28 Score=28.45 Aligned_cols=54 Identities=11% Similarity=0.105 Sum_probs=39.9
Q ss_pred hhhhhhhhhccCCCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHhhhhcccccCCCCCCce
Q psy14208 713 VQEAIIKILKMRKRISNAQLQTELVDILKNMFLPSKKMIKEQIEWLIEQKYMRRDDDDINVF 774 (778)
Q Consensus 713 i~A~IVRiMK~~k~l~~~~L~~~v~~~l~~~F~p~~~~iK~~Ie~LIereyl~Rd~~d~~~y 774 (778)
.+..|.+.+.....++..+|-..+ ..+...+-+.+..|.+.|+|.+..+.+..|
T Consensus 25 ~~~~il~~l~~~~~~s~~ela~~l--------~is~~tvs~~l~~L~~~glv~~~~~~r~~~ 78 (99)
T 3cuo_A 25 KRLLILCMLSGSPGTSAGELTRIT--------GLSASATSQHLARMRDEGLIDSQRDAQRIL 78 (99)
T ss_dssp HHHHHHHHHTTCCSEEHHHHHHHH--------CCCHHHHHHHHHHHHHTTSEEEEECSSCEE
T ss_pred HHHHHHHHHHhCCCcCHHHHHHHH--------CcCHHHHHHHHHHHHHCCCEEEEecCCEEE
Confidence 445566777666678887665433 357888999999999999999877655444
No 155
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=36.57 E-value=34 Score=29.30 Aligned_cols=40 Identities=15% Similarity=0.184 Sum_probs=34.0
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHcCCChHHHHHHHHHhhc
Q psy14208 595 TFQMAVLFAWNERPLDRLSFENLLLATELPDPELRRTLWSLVA 637 (778)
Q Consensus 595 ~~Q~~ILl~FN~~~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~ 637 (778)
..|..||..+.+ +..|+.+|++.+|++...+.++|..|..
T Consensus 32 ~~~~~il~~L~~---~~~s~~ela~~l~is~stvsr~l~~Le~ 71 (119)
T 2lkp_A 32 PSRLMILTQLRN---GPLPVTDLAEAIGMEQSAVSHQLRVLRN 71 (119)
T ss_dssp HHHHHHHHHHHH---CCCCHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH---CCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 557777777765 4689999999999999999999999985
No 156
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=36.52 E-value=34 Score=30.86 Aligned_cols=45 Identities=7% Similarity=0.114 Sum_probs=37.2
Q ss_pred ecHHHHHHHHhhcCCCCCcccHHHHHHHcCCChHHHHHHHHHhhccc
Q psy14208 593 VTTFQMAVLFAWNERPLDRLSFENLLLATELPDPELRRTLWSLVAFP 639 (778)
Q Consensus 593 ~s~~Q~~ILl~FN~~~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~~ 639 (778)
++..+..||.++.. +..+|+.+|++.+|++...+.+.|..|...|
T Consensus 5 ld~~~~~il~~L~~--~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G 49 (151)
T 2cyy_A 5 LDEIDKKIIKILQN--DGKAPLREISKITGLAESTIHERIRKLRESG 49 (151)
T ss_dssp CCHHHHHHHHHHHH--CTTCCHHHHHHHHCSCHHHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHH--cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 45567777877766 3679999999999999999999999998643
No 157
>1xma_A Predicted transcriptional regulator; southea collaboratory for structural genomics, secsg, protein struc initiative, PSI; 2.30A {Clostridium thermocellum} SCOP: a.4.5.61
Probab=35.76 E-value=37 Score=30.69 Aligned_cols=58 Identities=9% Similarity=0.105 Sum_probs=48.4
Q ss_pred hhhhhhhhhhhhccCCCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHhhhhcccccCC
Q psy14208 710 ILRVQEAIIKILKMRKRISNAQLQTELVDILKNMFLPSKKMIKEQIEWLIEQKYMRRDD 768 (778)
Q Consensus 710 ~~~i~A~IVRiMK~~k~l~~~~L~~~v~~~l~~~F~p~~~~iK~~Ie~LIereyl~Rd~ 768 (778)
+..++.+|..++. .+.+.-.+|..++.+.....+.++...+-..+..|.++|||+|..
T Consensus 39 ~g~~~~~IL~~L~-~~~~~gyeI~~~l~~~~~~~~~is~gtLy~~L~rLE~~GlI~~~~ 96 (145)
T 1xma_A 39 RGYVDTIILSLLI-EGDSYGYEISKNIRIKTDELYVIKETTLYSAFARLEKNGYIKSYY 96 (145)
T ss_dssp GGTHHHHHHHHHH-HCCEEHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred cCcHHHHHHHHHH-hCCCCHHHHHHHHHHhhCCccCcChhHHHHHHHHHHHCCCEEEEE
Confidence 3456777888885 477889999999987776678899999999999999999998863
No 158
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=35.66 E-value=43 Score=22.89 Aligned_cols=31 Identities=10% Similarity=-0.095 Sum_probs=24.3
Q ss_pred HHHHhhcCCCCCcccHHHHHHHcCCChHHHHHHHH
Q psy14208 599 AVLFAWNERPLDRLSFENLLLATELPDPELRRTLW 633 (778)
Q Consensus 599 ~ILl~FN~~~~~~~t~~ei~~~t~i~~~~l~~~L~ 633 (778)
.|+.++.+ .+|..+|++.+|++...+.+.+.
T Consensus 13 ~i~~~~~~----g~s~~~IA~~lgis~~Tv~~~~~ 43 (51)
T 1tc3_C 13 QLDVMKLL----NVSLHEMSRKISRSRHCIRVYLK 43 (51)
T ss_dssp HHHHHHHT----TCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHc----CCCHHHHHHHHCcCHHHHHHHHh
Confidence 45555543 47999999999999999988765
No 159
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=35.46 E-value=33 Score=30.66 Aligned_cols=45 Identities=22% Similarity=0.257 Sum_probs=33.5
Q ss_pred hhhhhhhhccCCCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHhhhhccccc
Q psy14208 714 QEAIIKILKMRKRISNAQLQTELVDILKNMFLPSKKMIKEQIEWLIEQKYMRR 766 (778)
Q Consensus 714 ~A~IVRiMK~~k~l~~~~L~~~v~~~l~~~F~p~~~~iK~~Ie~LIereyl~R 766 (778)
+..|...+...+.++..+|-..+ ..+.+.+-+.|..|.++|||+|
T Consensus 43 ~~~iL~~l~~~~~~t~~eLa~~l--------~~~~~tvs~~l~~Le~~Glv~r 87 (154)
T 2qww_A 43 QLAMINVIYSTPGISVADLTKRL--------IITGSSAAANVDGLISLGLVVK 87 (154)
T ss_dssp HHHHHHHHHHSTTEEHHHHHHHH--------TCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHCCCCCHHHHHHHH--------CCCHHHHHHHHHHHHHCCCEEe
Confidence 34455555556677777666544 2577889999999999999999
No 160
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=35.45 E-value=54 Score=24.84 Aligned_cols=27 Identities=7% Similarity=0.095 Sum_probs=22.6
Q ss_pred CcccHHHHHHHcCCChHHHHHHHHHhh
Q psy14208 610 DRLSFENLLLATELPDPELRRTLWSLV 636 (778)
Q Consensus 610 ~~~t~~ei~~~t~i~~~~l~~~L~sL~ 636 (778)
+++|++||++.+|++...+...+....
T Consensus 24 ~g~s~~eIA~~lgis~~tV~~~~~ra~ 50 (68)
T 2p7v_B 24 TDYTLEEVGKQFDVTRERIRQIEAKAL 50 (68)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 468999999999999998887776544
No 161
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=35.30 E-value=24 Score=28.05 Aligned_cols=40 Identities=18% Similarity=0.303 Sum_probs=32.8
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHcCCChHHHHHHHHHhhc
Q psy14208 597 QMAVLFAWNERPLDRLSFENLLLATELPDPELRRTLWSLVA 637 (778)
Q Consensus 597 Q~~ILl~FN~~~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~ 637 (778)
.=-||-.+.+. ...++-.+|++.+|++.+++.++|..|-.
T Consensus 21 eekVLe~Lkea-G~PlkageIae~~GvdKKeVdKaik~LKk 60 (80)
T 2lnb_A 21 EQRILQVLTEA-GSPVKLAQLVKECQAPKRELNQVLYRMKK 60 (80)
T ss_dssp HHHHHHHHHHH-TSCEEHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHc-CCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 33567666663 46899999999999999999999999963
No 162
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=34.33 E-value=23 Score=30.89 Aligned_cols=33 Identities=12% Similarity=0.355 Sum_probs=24.7
Q ss_pred CCCChhhHHHHHHHhhhhccccc--CCCCC-CceEe
Q psy14208 744 FLPSKKMIKEQIEWLIEQKYMRR--DDDDI-NVFVY 776 (778)
Q Consensus 744 F~p~~~~iK~~Ie~LIereyl~R--d~~d~-~~y~Y 776 (778)
+..+.+.+-+.|+.|.++|||+| ++.|+ ..+.+
T Consensus 63 l~~~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~i~ 98 (127)
T 2frh_A 63 LNYKQPQVVKAVKILSQEDYFDKKRNEHDERTVLIL 98 (127)
T ss_dssp SSSHHHHHHHHHHHHHHTTSSCCBCCSSSSCCCEEE
T ss_pred HCCCHHHHHHHHHHHHHCCCEEecCCCCCCCeeEEE
Confidence 44677889999999999999999 44443 34443
No 163
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=33.64 E-value=56 Score=25.37 Aligned_cols=39 Identities=10% Similarity=0.044 Sum_probs=30.9
Q ss_pred cHHHHHHHHhhcCCCCCcccHHHHHHHcCCChHHHHHHHHHhh
Q psy14208 594 TTFQMAVLFAWNERPLDRLSFENLLLATELPDPELRRTLWSLV 636 (778)
Q Consensus 594 s~~Q~~ILl~FN~~~~~~~t~~ei~~~t~i~~~~l~~~L~sL~ 636 (778)
|.-|--|+.++- .++|.++|++.+|++...+...+....
T Consensus 18 ~~~e~~vl~l~~----~g~s~~eIA~~l~is~~tV~~~~~r~~ 56 (79)
T 1x3u_A 18 SERERQVLSAVV----AGLPNKSIAYDLDISPRTVEVHRANVM 56 (79)
T ss_dssp CHHHHHHHHHHT----TTCCHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH----cCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 555666776663 468999999999999999998887665
No 164
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=33.52 E-value=33 Score=29.59 Aligned_cols=51 Identities=12% Similarity=0.177 Sum_probs=40.7
Q ss_pred EecHHHHHHHHhhcCCCCCcccHHHHHHHcC----CChHHHHHHHHHhhcccccccceeecc
Q psy14208 592 DVTTFQMAVLFAWNERPLDRLSFENLLLATE----LPDPELRRTLWSLVAFPKIKRQILLYS 649 (778)
Q Consensus 592 ~~s~~Q~~ILl~FN~~~~~~~t~~ei~~~t~----i~~~~l~~~L~sL~~~~k~k~~iL~~~ 649 (778)
.+|..|..||..+-+ .+++|..+|++.++ ++...+.+.|..|... +++.+.
T Consensus 7 ~Lt~~q~~vL~~L~~--~~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~k-----Glv~R~ 61 (126)
T 1sd4_A 7 EISMAEWDVMNIIWD--KKSVSANEIVVEIQKYKEVSDKTIRTLITRLYKK-----EIIKRY 61 (126)
T ss_dssp CCCHHHHHHHHHHHH--SSSEEHHHHHHHHHTTSCCCHHHHHHHHHHHHHT-----TSEEEE
T ss_pred CCCHHHHHHHHHHHh--cCCCCHHHHHHHHhhcCCCChhhHHHHHHHHHHC-----CceEEE
Confidence 357889999987766 36799999999987 5789999999999852 267654
No 165
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=33.26 E-value=49 Score=27.21 Aligned_cols=40 Identities=13% Similarity=0.110 Sum_probs=32.6
Q ss_pred ecHHHHHHHHhhcCCCCCcccHHHHHHHcCCChHHHHHHHHHhh
Q psy14208 593 VTTFQMAVLFAWNERPLDRLSFENLLLATELPDPELRRTLWSLV 636 (778)
Q Consensus 593 ~s~~Q~~ILl~FN~~~~~~~t~~ei~~~t~i~~~~l~~~L~sL~ 636 (778)
+|.-|.-|+.++ - .++|.+||++.+|++...++.++....
T Consensus 28 Lt~~e~~vl~l~-~---~g~s~~eIA~~l~is~~tV~~~l~r~~ 67 (95)
T 3c57_A 28 LTDQERTLLGLL-S---EGLTNKQIADRMFLAEKTVKNYVSRLL 67 (95)
T ss_dssp CCHHHHHHHHHH-H---TTCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHH-H---cCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 467777777766 3 468999999999999999998887765
No 166
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=33.15 E-value=30 Score=28.38 Aligned_cols=40 Identities=10% Similarity=0.155 Sum_probs=32.0
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHcCCChHH-HHHHHHHhhc
Q psy14208 597 QMAVLFAWNERPLDRLSFENLLLATELPDPE-LRRTLWSLVA 637 (778)
Q Consensus 597 Q~~ILl~FN~~~~~~~t~~ei~~~t~i~~~~-l~~~L~sL~~ 637 (778)
+..+|..+... ...+|..+|++.+|++... +.+.|..|..
T Consensus 17 ~l~~L~~l~~~-~~~~t~~eLa~~l~is~~t~vs~~l~~Le~ 57 (95)
T 2pg4_A 17 ILPTLLEFEKK-GYEPSLAEIVKASGVSEKTFFMGLKDRLIR 57 (95)
T ss_dssp HHHHHHHHHHT-TCCCCHHHHHHHHCCCHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHhc-CCCCCHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 44566666552 2379999999999999999 9999999985
No 167
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=33.05 E-value=41 Score=27.87 Aligned_cols=41 Identities=10% Similarity=0.318 Sum_probs=32.0
Q ss_pred cHHHHHHH-HhhcCCCCCcccHHHHHHHcCCChHHHHHHHHHhhc
Q psy14208 594 TTFQMAVL-FAWNERPLDRLSFENLLLATELPDPELRRTLWSLVA 637 (778)
Q Consensus 594 s~~Q~~IL-l~FN~~~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~ 637 (778)
++....|| .+..+ +++|+.+|++.+|++...+.++|..|..
T Consensus 26 ~~~Rl~IL~~l~~~---~~~~~~ela~~l~is~stvs~hL~~L~~ 67 (99)
T 2zkz_A 26 HPMRLKIVNELYKH---KALNVTQIIQILKLPQSTVSQHLCKMRG 67 (99)
T ss_dssp SHHHHHHHHHHHHH---SCEEHHHHHHHHTCCHHHHHHHHHHHBT
T ss_pred CHHHHHHHHHHHHC---CCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 34455566 33333 5699999999999999999999999974
No 168
>2l01_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Bacteroides vulgatus}
Probab=32.77 E-value=50 Score=26.32 Aligned_cols=39 Identities=23% Similarity=0.146 Sum_probs=32.6
Q ss_pred HHHHhhcCCCCCcccHHHHHHHcCC-ChHHHHHHHHHhhccc
Q psy14208 599 AVLFAWNERPLDRLSFENLLLATEL-PDPELRRTLWSLVAFP 639 (778)
Q Consensus 599 ~ILl~FN~~~~~~~t~~ei~~~t~i-~~~~l~~~L~sL~~~~ 639 (778)
.|--++|+ .+.+|+++|++.||+ ++.++..++.-|+.-+
T Consensus 14 ~VW~~L~~--~~~~s~~el~k~t~l~~d~el~lAiGWLaREd 53 (77)
T 2l01_A 14 QIWEALNG--TEGLTQKQIKKATKLKADKDFFLGLGWLLRED 53 (77)
T ss_dssp HHHHHHTT--SSCEEHHHHHHHHTCSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhc--CCCCCHHHHHHHHCCCCHHHHHHHHHHHhhcC
Confidence 45556777 368999999999999 9999999999998533
No 169
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=32.76 E-value=44 Score=29.96 Aligned_cols=45 Identities=18% Similarity=0.103 Sum_probs=34.3
Q ss_pred ecHHHHHHHHhhcCCC---CCcccHHHHHHHcCCChHHHHHHHHHhhc
Q psy14208 593 VTTFQMAVLFAWNERP---LDRLSFENLLLATELPDPELRRTLWSLVA 637 (778)
Q Consensus 593 ~s~~Q~~ILl~FN~~~---~~~~t~~ei~~~t~i~~~~l~~~L~sL~~ 637 (778)
+|..|..||......+ .+.+|..+|++.++++...+.+.+..|..
T Consensus 31 Lt~~q~~vL~~l~~~~~~~~~~~t~~eLa~~l~~~~~tvsr~v~~Le~ 78 (148)
T 4fx0_A 31 LTNTQFSTLAVISLSEGSAGIDLTMSELAARIGVERTTLTRNLEVMRR 78 (148)
T ss_dssp CCHHHHHHHHHHHC---------CHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHCCChhhHHHHHHHHHH
Confidence 4677888887765421 24599999999999999999999999984
No 170
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=32.57 E-value=44 Score=24.54 Aligned_cols=26 Identities=0% Similarity=-0.032 Sum_probs=23.3
Q ss_pred cccHHHHHHHcCCChHHHHHHHHHhh
Q psy14208 611 RLSFENLLLATELPDPELRRTLWSLV 636 (778)
Q Consensus 611 ~~t~~ei~~~t~i~~~~l~~~L~sL~ 636 (778)
++|.+||++.+|++...+..++..+.
T Consensus 13 g~s~~eIA~~l~is~~tV~~~~~~~~ 38 (61)
T 2jpc_A 13 GYTNHGISEKLHISIKTVETHRMNMM 38 (61)
T ss_dssp SCCSHHHHHHTCSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 57999999999999999998888775
No 171
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=32.25 E-value=22 Score=29.24 Aligned_cols=44 Identities=5% Similarity=-0.012 Sum_probs=32.7
Q ss_pred cHHHHHHHHhhcC--CCCCcccHHHHHHHcCCChHHHHHHHHHhhc
Q psy14208 594 TTFQMAVLFAWNE--RPLDRLSFENLLLATELPDPELRRTLWSLVA 637 (778)
Q Consensus 594 s~~Q~~ILl~FN~--~~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~ 637 (778)
+.-+..||+.+-. .+...+|..+|++.++++...+.+.|..|..
T Consensus 11 ~~~~~~iL~~l~~~~~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le~ 56 (95)
T 2qvo_A 11 KEKALEILMTIYYESLGGNDVYIQYIASKVNSPHSYVWLIIKKFEE 56 (95)
T ss_dssp CHHHHHHHHHHHHHHHTTCCEEHHHHHHHSSSCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHccCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4456666655522 1112399999999999999999999999985
No 172
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=31.95 E-value=57 Score=26.66 Aligned_cols=42 Identities=14% Similarity=0.095 Sum_probs=34.1
Q ss_pred EEecHHHHHHHHhhcCCCCCcccHHHHHHHcCCChHHHHHHHHHhh
Q psy14208 591 LDVTTFQMAVLFAWNERPLDRLSFENLLLATELPDPELRRTLWSLV 636 (778)
Q Consensus 591 l~~s~~Q~~ILl~FN~~~~~~~t~~ei~~~t~i~~~~l~~~L~sL~ 636 (778)
...|.-|.-||.++-+ ++|.+||++.+|++...++.++..+.
T Consensus 28 ~~Lt~rE~~Vl~l~~~----G~s~~eIA~~L~iS~~TV~~~~~~i~ 69 (90)
T 3ulq_B 28 DVLTPRECLILQEVEK----GFTNQEIADALHLSKRSIEYSLTSIF 69 (90)
T ss_dssp -CCCHHHHHHHHHHHT----TCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHc----CCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 3457777778777654 58999999999999999999998776
No 173
>1eze_A Cholesteryl ester transferase inhibitor protein; amphipathic helix; NMR {Synthetic} SCOP: j.39.1.1 PDB: 1opp_A
Probab=31.94 E-value=17 Score=24.71 Aligned_cols=25 Identities=24% Similarity=0.357 Sum_probs=22.0
Q ss_pred HHHHHcCCChhhHHHHHHHHHhHHHhH
Q psy14208 477 EWLRDVGMPADYVNKLARMFQDIKVSQ 503 (778)
Q Consensus 477 ~~Lk~~G~~~~~t~kl~~Ml~D~~~S~ 503 (778)
.+++++| .....|...+|+|+..|.
T Consensus 9 dkvke~g--~tl~eK~k~~~~~i~~Se 33 (38)
T 1eze_A 9 DKLKEFG--NTLEDKAWEVINRIKQSE 33 (38)
T ss_dssp HHHHHHT--THHHHHHHHHHHHHHTTT
T ss_pred HHHHHHH--HHHHHHHHHHHHHhhccc
Confidence 8899989 588999999999998874
No 174
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=31.93 E-value=44 Score=30.63 Aligned_cols=40 Identities=15% Similarity=0.071 Sum_probs=33.5
Q ss_pred HHHHHhhcCCCCCcccHHHHHHHcCCChHHHHHHHHHhhccc
Q psy14208 598 MAVLFAWNERPLDRLSFENLLLATELPDPELRRTLWSLVAFP 639 (778)
Q Consensus 598 ~~ILl~FN~~~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~~ 639 (778)
..||.++.. +..+|+.+|++.+|++...+.+.|..|...|
T Consensus 6 ~~il~~L~~--~~~~s~~~la~~lg~s~~tv~~rl~~L~~~g 45 (162)
T 3i4p_A 6 RKILRILQE--DSTLAVADLAKKVGLSTTPCWRRIQKMEEDG 45 (162)
T ss_dssp HHHHHHHTT--CSCSCHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHH--CCCCCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 456666666 4689999999999999999999999998643
No 175
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=31.77 E-value=48 Score=29.79 Aligned_cols=36 Identities=17% Similarity=0.165 Sum_probs=31.0
Q ss_pred CcccHHHHHHHcCCChHHHHHHHHHhhcccccccceeeccc
Q psy14208 610 DRLSFENLLLATELPDPELRRTLWSLVAFPKIKRQILLYSE 650 (778)
Q Consensus 610 ~~~t~~ei~~~t~i~~~~l~~~L~sL~~~~k~k~~iL~~~~ 650 (778)
+.+++.+|++.+|++...+.+.|..|...| ++.+.+
T Consensus 36 g~~~~~eLa~~lgis~~tls~~L~~Le~~G-----lI~r~~ 71 (146)
T 2f2e_A 36 GLTRFGEFQKSLGLAKNILAARLRNLVEHG-----VMVAVP 71 (146)
T ss_dssp TCCSHHHHHHHHCCCHHHHHHHHHHHHHTT-----SEEEEE
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHCC-----CEEEEe
Confidence 468999999999999999999999998643 777654
No 176
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=31.73 E-value=38 Score=28.81 Aligned_cols=46 Identities=9% Similarity=0.067 Sum_probs=35.2
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHc-CCChHHHHHHHHHhhcccccccceeecc
Q psy14208 596 FQMAVLFAWNERPLDRLSFENLLLAT-ELPDPELRRTLWSLVAFPKIKRQILLYS 649 (778)
Q Consensus 596 ~Q~~ILl~FN~~~~~~~t~~ei~~~t-~i~~~~l~~~L~sL~~~~k~k~~iL~~~ 649 (778)
....||....+ +.+++.+|++.+ |++...+.++|..|...| ++.+.
T Consensus 23 ~~~~IL~~L~~---~~~~~~eLa~~l~~is~~tvs~~L~~Le~~G-----lI~r~ 69 (112)
T 1z7u_A 23 WKLSLMDELFQ---GTKRNGELMRALDGITQRVLTDRLREMEKDG-----LVHRE 69 (112)
T ss_dssp THHHHHHHHHH---SCBCHHHHHHHSTTCCHHHHHHHHHHHHHHT-----SEEEE
T ss_pred cHHHHHHHHHh---CCCCHHHHHHHhccCCHHHHHHHHHHHHHCC-----CEEEe
Confidence 44555554433 468999999999 999999999999998532 77654
No 177
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=31.29 E-value=40 Score=27.83 Aligned_cols=45 Identities=13% Similarity=0.151 Sum_probs=31.0
Q ss_pred hhhhhcc--CCCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHhhhhcccc--cCCC
Q psy14208 717 IIKILKM--RKRISNAQLQTELVDILKNMFLPSKKMIKEQIEWLIEQKYMR--RDDD 769 (778)
Q Consensus 717 IVRiMK~--~k~l~~~~L~~~v~~~l~~~F~p~~~~iK~~Ie~LIereyl~--Rd~~ 769 (778)
|.+++.. .+.+...+|-.. ...+...+.++|..|.++|||+ ++..
T Consensus 25 Vl~~I~~~g~~gi~qkeLa~~--------~~l~~~tvt~iLk~LE~kglIkr~~~~~ 73 (91)
T 2dk5_A 25 VYQIIEDAGNKGIWSRDVRYK--------SNLPLTEINKILKNLESKKLIKAVKSVA 73 (91)
T ss_dssp HHHHHHHHCTTCEEHHHHHHH--------TTCCHHHHHHHHHHHHHTTSEEEECCSS
T ss_pred HHHHHHHcCCCCcCHHHHHHH--------HCCCHHHHHHHHHHHHHCCCEEEecCCC
Confidence 3444444 446766655533 3467888999999999999999 4444
No 178
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=30.88 E-value=57 Score=24.52 Aligned_cols=39 Identities=21% Similarity=0.069 Sum_probs=27.6
Q ss_pred cHHHHHHHHh-hcCCCCCcccHHHHHHHcCCChHHHHHHHHHhh
Q psy14208 594 TTFQMAVLFA-WNERPLDRLSFENLLLATELPDPELRRTLWSLV 636 (778)
Q Consensus 594 s~~Q~~ILl~-FN~~~~~~~t~~ei~~~t~i~~~~l~~~L~sL~ 636 (778)
+.-|-.|+.+ |- +++|+++|++.+|++...+.+.+....
T Consensus 17 ~~~~r~il~l~~~----~g~s~~eIA~~lgis~~tv~~~~~ra~ 56 (70)
T 2o8x_A 17 TTDQREALLLTQL----LGLSYADAAAVCGCPVGTIRSRVARAR 56 (70)
T ss_dssp CHHHHHHHHHHHT----SCCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH----cCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 4445555543 43 358999999999999988877665443
No 179
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=30.58 E-value=1.1e+02 Score=21.75 Aligned_cols=22 Identities=18% Similarity=0.311 Sum_probs=19.6
Q ss_pred cccHHHHHHHcCCChHHHHHHH
Q psy14208 611 RLSFENLLLATELPDPELRRTL 632 (778)
Q Consensus 611 ~~t~~ei~~~t~i~~~~l~~~L 632 (778)
.+|..+|++.+|++...+.+.+
T Consensus 31 g~s~~eIA~~lgis~~TV~~~l 52 (55)
T 2x48_A 31 GYTVQQIANALGVSERKVRRYL 52 (55)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHH
Confidence 4799999999999999988766
No 180
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=30.54 E-value=45 Score=30.50 Aligned_cols=47 Identities=21% Similarity=0.271 Sum_probs=39.9
Q ss_pred hhhhhhhhhccCCCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHhhhhcccccC
Q psy14208 713 VQEAIIKILKMRKRISNAQLQTELVDILKNMFLPSKKMIKEQIEWLIEQKYMRRD 767 (778)
Q Consensus 713 i~A~IVRiMK~~k~l~~~~L~~~v~~~l~~~F~p~~~~iK~~Ie~LIereyl~Rd 767 (778)
+|-.|.+.+.....++..+|-..+ ..+...+.++|..|.++|+|+|-
T Consensus 4 ~d~~il~~L~~~~~~s~~~la~~l--------g~s~~tv~~rl~~L~~~g~i~~~ 50 (162)
T 3i4p_A 4 LDRKILRILQEDSTLAVADLAKKV--------GLSTTPCWRRIQKMEEDGVIRRR 50 (162)
T ss_dssp HHHHHHHHHTTCSCSCHHHHHHHH--------TCCHHHHHHHHHHHHHTTSSCCC
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHH--------CcCHHHHHHHHHHHHHCCCeeec
Confidence 566789999999999999776554 36889999999999999999973
No 181
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=30.00 E-value=62 Score=28.26 Aligned_cols=47 Identities=15% Similarity=0.135 Sum_probs=35.2
Q ss_pred hhhhhhhh-ccCCCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHhhhhcccccCC
Q psy14208 714 QEAIIKIL-KMRKRISNAQLQTELVDILKNMFLPSKKMIKEQIEWLIEQKYMRRDD 768 (778)
Q Consensus 714 ~A~IVRiM-K~~k~l~~~~L~~~v~~~l~~~F~p~~~~iK~~Ie~LIereyl~Rd~ 768 (778)
+..|...+ .....++..+|...+ ..+.+.+-+.|..|.++|||.|..
T Consensus 39 ~~~iL~~l~~~~~~~t~~~la~~l--------~~s~~~vs~~l~~L~~~glv~r~~ 86 (146)
T 2fbh_A 39 RWLVLLHLARHRDSPTQRELAQSV--------GVEGPTLARLLDGLESQGLVRRLA 86 (146)
T ss_dssp HHHHHHHHHHCSSCCBHHHHHHHH--------TCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHh--------CCChhhHHHHHHHHHHCCCeeecC
Confidence 34455555 566778888766443 367888999999999999999854
No 182
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=29.41 E-value=68 Score=28.25 Aligned_cols=48 Identities=17% Similarity=0.202 Sum_probs=36.2
Q ss_pred cHHHHHHHHhhcCCCCCcccHHHHHHHc-CCChHHHHHHHHHhhcccccccceeecc
Q psy14208 594 TTFQMAVLFAWNERPLDRLSFENLLLAT-ELPDPELRRTLWSLVAFPKIKRQILLYS 649 (778)
Q Consensus 594 s~~Q~~ILl~FN~~~~~~~t~~ei~~~t-~i~~~~l~~~L~sL~~~~k~k~~iL~~~ 649 (778)
......||....+ +.+++.+|++.+ |++...+.++|..|...| ++.+.
T Consensus 34 ~~w~l~IL~~L~~---g~~~~~eLa~~l~gis~~tls~~L~~Le~~G-----lV~r~ 82 (131)
T 1yyv_A 34 SRWGVLILVALRD---GTHRFSDLRRXMGGVSEXMLAQSLQALEQDG-----FLNRV 82 (131)
T ss_dssp SHHHHHHHHHGGG---CCEEHHHHHHHSTTCCHHHHHHHHHHHHHHT-----CEEEE
T ss_pred CCcHHHHHHHHHc---CCCCHHHHHHHhccCCHHHHHHHHHHHHHCC-----cEEEE
Confidence 3444556654443 579999999999 799999999999998533 77654
No 183
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=29.09 E-value=60 Score=29.26 Aligned_cols=48 Identities=15% Similarity=0.248 Sum_probs=36.1
Q ss_pred hhhhhhhhhccCCCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHhhhhcccccCC
Q psy14208 713 VQEAIIKILKMRKRISNAQLQTELVDILKNMFLPSKKMIKEQIEWLIEQKYMRRDD 768 (778)
Q Consensus 713 i~A~IVRiMK~~k~l~~~~L~~~v~~~l~~~F~p~~~~iK~~Ie~LIereyl~Rd~ 768 (778)
-+..|...+.....++..+|-..+ ..+...+-+.|..|.++|||+|..
T Consensus 47 ~q~~iL~~l~~~~~~t~~eLa~~l--------~~~~~tvs~~l~~Le~~Glv~r~~ 94 (162)
T 3k0l_A 47 PQFTALSVLAAKPNLSNAKLAERS--------FIKPQSANKILQDLLANGWIEKAP 94 (162)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHH--------TSCGGGHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHH--------CCCHHHHHHHHHHHHHCcCeEecC
Confidence 345566677677788887765433 357788999999999999999854
No 184
>1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28 c.94.1.1
Probab=28.79 E-value=45 Score=36.43 Aligned_cols=53 Identities=13% Similarity=0.118 Sum_probs=43.3
Q ss_pred ecHHHHHHHHhhcCCCCCcccHHHHHHHcCCChHHHHHHHHHhhcccccccceeeccc
Q psy14208 593 VTTFQMAVLFAWNERPLDRLSFENLLLATELPDPELRRTLWSLVAFPKIKRQILLYSE 650 (778)
Q Consensus 593 ~s~~Q~~ILl~FN~~~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~~k~k~~iL~~~~ 650 (778)
+|.-|..||..+.+.+.+.+|..+|++.++++...+.+.|..|... +++.+.+
T Consensus 402 lt~~q~~vl~~l~~~~~~~~~~~~l~~~~~~~~~~~t~~~~~le~~-----g~v~r~~ 454 (487)
T 1hsj_A 402 LNYEEIYILNHILRSESNEISSKEIAKCSEFKPYYLTKALQKLKDL-----KLLSKKR 454 (487)
T ss_dssp CCHHHHHHHHHHHTCSCSEEEHHHHHHSSCCCHHHHHHHHHHHHTT-----TTSCCEE
T ss_pred CCHHHHHHHHHHHhCCCCCcCHHHHHHHHCCCHHHHHHHHHHHHHC-----CCEeecC
Confidence 4788999998886632378999999999999999999999999852 3776654
No 185
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=28.70 E-value=71 Score=28.17 Aligned_cols=51 Identities=16% Similarity=0.100 Sum_probs=40.5
Q ss_pred ecHHHHHHHHhhcCCCCCcccHHHHHHHcC----CChHHHHHHHHHhhcccccccceeecc
Q psy14208 593 VTTFQMAVLFAWNERPLDRLSFENLLLATE----LPDPELRRTLWSLVAFPKIKRQILLYS 649 (778)
Q Consensus 593 ~s~~Q~~ILl~FN~~~~~~~t~~ei~~~t~----i~~~~l~~~L~sL~~~~k~k~~iL~~~ 649 (778)
+|..|..||..+-+. ++.+|..+|++.++ ++...+.+.|..|... +++.+.
T Consensus 7 lt~~e~~vL~~L~~~-~~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~k-----Glv~r~ 61 (138)
T 2g9w_A 7 LGDLERAVMDHLWSR-TEPQTVRQVHEALSARRDLAYTTVMAVLQRLAKK-----NLVLQI 61 (138)
T ss_dssp CCHHHHHHHHHHHTC-SSCEEHHHHHHHHTTTCCCCHHHHHHHHHHHHHT-----TSEEEE
T ss_pred CCHHHHHHHHHHHhc-CCCCCHHHHHHHHhccCCCCHHHHHHHHHHHHHC-----CCEEEE
Confidence 577899898877542 26799999999997 7999999999999852 267654
No 186
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=28.51 E-value=51 Score=27.75 Aligned_cols=35 Identities=14% Similarity=0.170 Sum_probs=29.8
Q ss_pred CcccHHHHHHHcCCChHHHHHHHHHhhcccccccceeecc
Q psy14208 610 DRLSFENLLLATELPDPELRRTLWSLVAFPKIKRQILLYS 649 (778)
Q Consensus 610 ~~~t~~ei~~~t~i~~~~l~~~L~sL~~~~k~k~~iL~~~ 649 (778)
+.+|..+|++.+|++...+.++|..|...| ++...
T Consensus 32 ~~~s~~eLa~~lgvs~~tV~~~L~~L~~~G-----lV~~~ 66 (110)
T 1q1h_A 32 TEMTDEEIANQLNIKVNDVRKKLNLLEEQG-----FVSYR 66 (110)
T ss_dssp SCBCHHHHHHTTTSCHHHHHHHHHHHHHHT-----SCEEE
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCC-----CEEEE
Confidence 469999999999999999999999998643 66544
No 187
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=28.49 E-value=44 Score=30.48 Aligned_cols=51 Identities=20% Similarity=0.146 Sum_probs=34.4
Q ss_pred hhhhhhhhccCCCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHhhhhccccc--CCCCCC
Q psy14208 714 QEAIIKILKMRKRISNAQLQTELVDILKNMFLPSKKMIKEQIEWLIEQKYMRR--DDDDIN 772 (778)
Q Consensus 714 ~A~IVRiMK~~k~l~~~~L~~~v~~~l~~~F~p~~~~iK~~Ie~LIereyl~R--d~~d~~ 772 (778)
+..|...+.....++..+|-..+ ..+...+-+.|..|.++|||.| ++.|+.
T Consensus 47 ~~~iL~~L~~~~~~t~~eLa~~l--------~is~~tvs~~l~~Le~~GlV~r~~~~~DrR 99 (168)
T 2nyx_A 47 QFRTLVILSNHGPINLATLATLL--------GVQPSATGRMVDRLVGAELIDRLPHPTSRR 99 (168)
T ss_dssp HHHHHHHHHHHCSEEHHHHHHHH--------TSCHHHHHHHHHHHHHTTSEEEEECSSCSS
T ss_pred HHHHHHHHHHcCCCCHHHHHHHh--------CCCHHHHHHHHHHHHHCCCEEeccCCCCCC
Confidence 34445555555566666554333 3678899999999999999998 444443
No 188
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=28.39 E-value=62 Score=26.27 Aligned_cols=38 Identities=11% Similarity=0.096 Sum_probs=27.2
Q ss_pred cHHHHHHHHh-hcCCCCCcccHHHHHHHcCCChHHHHHHHHHh
Q psy14208 594 TTFQMAVLFA-WNERPLDRLSFENLLLATELPDPELRRTLWSL 635 (778)
Q Consensus 594 s~~Q~~ILl~-FN~~~~~~~t~~ei~~~t~i~~~~l~~~L~sL 635 (778)
+.-|--|+.+ |- .++|++||++.+|++...++..+.-.
T Consensus 39 ~~~~r~vl~l~~~----~g~s~~eIA~~lgis~~tV~~~l~ra 77 (92)
T 3hug_A 39 SAEHRAVIQRSYY----RGWSTAQIATDLGIAEGTVKSRLHYA 77 (92)
T ss_dssp CHHHHHHHHHHHT----SCCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH----cCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 4445555544 43 35899999999999998888776544
No 189
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=28.24 E-value=69 Score=26.81 Aligned_cols=35 Identities=14% Similarity=0.089 Sum_probs=29.6
Q ss_pred CcccHHHHHHHc-CCChHHHHHHHHHhhcccccccceeecc
Q psy14208 610 DRLSFENLLLAT-ELPDPELRRTLWSLVAFPKIKRQILLYS 649 (778)
Q Consensus 610 ~~~t~~ei~~~t-~i~~~~l~~~L~sL~~~~k~k~~iL~~~ 649 (778)
+.+++.+|++.+ |++...+.++|..|...| ++.+.
T Consensus 37 ~~~~~~eL~~~l~gis~~~ls~~L~~Le~~G-----lV~r~ 72 (107)
T 2fsw_A 37 RIIRYGELKRAIPGISEKMLIDELKFLCGKG-----LIKKK 72 (107)
T ss_dssp SCEEHHHHHHHSTTCCHHHHHHHHHHHHHTT-----SEEEE
T ss_pred CCcCHHHHHHHcccCCHHHHHHHHHHHHHCC-----CEEEe
Confidence 569999999999 599999999999998643 77654
No 190
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=27.94 E-value=56 Score=28.66 Aligned_cols=44 Identities=18% Similarity=0.346 Sum_probs=32.1
Q ss_pred hhhhhhccCCCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHhhhhcccccCC
Q psy14208 716 AIIKILKMRKRISNAQLQTELVDILKNMFLPSKKMIKEQIEWLIEQKYMRRDD 768 (778)
Q Consensus 716 ~IVRiMK~~k~l~~~~L~~~v~~~l~~~F~p~~~~iK~~Ie~LIereyl~Rd~ 768 (778)
.|...+.... ++..+|-..+ ..+.+.+-+.|..|.++|||.|..
T Consensus 42 ~iL~~l~~~~-~t~~eLa~~l--------~~s~~tvs~~l~~L~~~Glv~r~~ 85 (146)
T 3tgn_A 42 HILMLLSEES-LTNSELARRL--------NVSQAAVTKAIKSLVKEGMLETSK 85 (146)
T ss_dssp HHHHHHTTCC-CCHHHHHHHH--------TCCHHHHHHHHHHHHHTTSEEC--
T ss_pred HHHHHHHhCC-CCHHHHHHHH--------CCCHHHHHHHHHHHHHCCCeEecc
Confidence 3445555566 8888766544 357888999999999999999865
No 191
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=27.73 E-value=37 Score=29.95 Aligned_cols=48 Identities=10% Similarity=0.067 Sum_probs=35.3
Q ss_pred hhhhhhhhhccCCCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHhhhhcccccCC
Q psy14208 713 VQEAIIKILKMRKRISNAQLQTELVDILKNMFLPSKKMIKEQIEWLIEQKYMRRDD 768 (778)
Q Consensus 713 i~A~IVRiMK~~k~l~~~~L~~~v~~~l~~~F~p~~~~iK~~Ie~LIereyl~Rd~ 768 (778)
-+..|...+.....++..+|-..+ ..+.+.+-+.|..|.++|||+|..
T Consensus 32 ~q~~iL~~l~~~~~~t~~eLa~~l--------~~~~~tvs~~l~~Le~~Glv~r~~ 79 (145)
T 3g3z_A 32 NLFAVLYTLATEGSRTQKHIGEKW--------SLPKQTVSGVCKTLAGQGLIEWQE 79 (145)
T ss_dssp HHHHHHHHHHHHCSBCHHHHHHHH--------TCCHHHHHHHHHHHHHTTSEEECC
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHH--------CCCHHHHHHHHHHHHHCCCEeecc
Confidence 345556666566678877765433 357888999999999999999854
No 192
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=27.69 E-value=68 Score=26.19 Aligned_cols=53 Identities=17% Similarity=0.328 Sum_probs=39.7
Q ss_pred hhhhhhhccCCCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHhhhhcccccCCCCCCceEe
Q psy14208 715 EAIIKILKMRKRISNAQLQTELVDILKNMFLPSKKMIKEQIEWLIEQKYMRRDDDDINVFVY 776 (778)
Q Consensus 715 A~IVRiMK~~k~l~~~~L~~~v~~~l~~~F~p~~~~iK~~Ie~LIereyl~Rd~~d~~~y~Y 776 (778)
..|++.+.. +.++..+|...+ ..+...+-+.+..|.+.|+|.+..+.+..|.+
T Consensus 26 ~~Il~~L~~-~~~~~~ela~~l--------~is~~tvs~~L~~L~~~Glv~~~~~g~~~~y~ 78 (98)
T 3jth_A 26 LQILCMLHN-QELSVGELCAKL--------QLSQSALSQHLAWLRRDGLVTTRKEAQTVYYT 78 (98)
T ss_dssp HHHHHHTTT-SCEEHHHHHHHH--------TCCHHHHHHHHHHHHHTTSEEEECCTTCCEEE
T ss_pred HHHHHHHhc-CCCCHHHHHHHH--------CcCHHHHHHHHHHHHHCCCeEEEEeCCEEEEE
Confidence 456677765 778888766544 25778899999999999999987766655544
No 193
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=26.79 E-value=63 Score=28.25 Aligned_cols=46 Identities=13% Similarity=0.138 Sum_probs=32.5
Q ss_pred hhhhhhhccCCCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHhhhhcccccCC
Q psy14208 715 EAIIKILKMRKRISNAQLQTELVDILKNMFLPSKKMIKEQIEWLIEQKYMRRDD 768 (778)
Q Consensus 715 A~IVRiMK~~k~l~~~~L~~~v~~~l~~~F~p~~~~iK~~Ie~LIereyl~Rd~ 768 (778)
..|...+.....++..+|-..+ ..+.+.+-+.|..|.++|||.|..
T Consensus 32 ~~iL~~l~~~~~~t~~~la~~l--------~~s~~~vs~~l~~Le~~gli~r~~ 77 (144)
T 1lj9_A 32 YLYLVRVCENPGIIQEKIAELI--------KVDRTTAARAIKRLEEQGFIYRQE 77 (144)
T ss_dssp HHHHHHHHHSTTEEHHHHHHHH--------TCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHCcCcCHHHHHHHH--------CCCHhHHHHHHHHHHHCCCEEeec
Confidence 3344455555667766555433 357889999999999999999853
No 194
>3cuq_B Vacuolar protein-sorting-associated protein 36; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_B
Probab=26.72 E-value=1.4e+02 Score=29.00 Aligned_cols=85 Identities=12% Similarity=0.030 Sum_probs=58.4
Q ss_pred ccCChHHHHHHHHHHHHHHhhCCCceeEeccCCceEEEEEEecCeeEEEEe-----cHHHHHHHHhhcCCCCCcccHHHH
Q psy14208 543 VSLPLELEDYIPEVEDFYKKKHSGRKLQWYHHMSNGTITFSNEVGKYDLDV-----TTFQMAVLFAWNERPLDRLSFENL 617 (778)
Q Consensus 543 ~~lP~~l~~~~~~f~~~Y~~k~~~R~L~w~~~l~~~~i~~~~~~~~~~l~~-----s~~Q~~ILl~FN~~~~~~~t~~ei 617 (778)
..-|..+..+.+.++. ||.+.--.++.+|.+-++- +..|..||-+... .+.+|..++
T Consensus 113 lVSp~Dl~~A~~~l~~----------------Lg~~~~l~~~~sg~~vvqs~~~~~~~~~~~il~~~~~--~g~vt~~~l 174 (218)
T 3cuq_B 113 LLSPEDLVNACKMLEA----------------LKLPLRLRVFDSGVMVIELQSHKEEEMVASALETVSE--KGSLTSEEF 174 (218)
T ss_dssp CCCHHHHHHHHHTTTT----------------TTCSEEEEECTTSBEEEEETTCCGGGGHHHHHHHHHH--TSCBCHHHH
T ss_pred CCCHHHHHHHHHHHHH----------------cCCCEEEEEECCCcEEEEcCCCchHHHHHHHHHHHHH--CCCcCHHHH
Confidence 3457778888776553 4433211244445554433 3588888876665 478999999
Q ss_pred HHHcCCChHHHHHHHHHhhcccccccceeeccc
Q psy14208 618 LLATELPDPELRRTLWSLVAFPKIKRQILLYSE 650 (778)
Q Consensus 618 ~~~t~i~~~~l~~~L~sL~~~~k~k~~iL~~~~ 650 (778)
+...|.+....+..|..+... +++..+.
T Consensus 175 a~~l~ws~~~a~e~L~~~e~~-----G~l~~D~ 202 (218)
T 3cuq_B 175 AKLVGMSVLLAKERLLLAEKM-----GHLCRDD 202 (218)
T ss_dssp HHHHTCCHHHHHHHHHHHHHT-----TSEEEEE
T ss_pred HHHhCCCHHHHHHHHHHHHHc-----CCEEEEC
Confidence 999999999999999988753 3777663
No 195
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=26.36 E-value=54 Score=29.20 Aligned_cols=48 Identities=8% Similarity=0.043 Sum_probs=36.2
Q ss_pred hhhhhhhhhccCCCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHhhhhcccccCC
Q psy14208 713 VQEAIIKILKMRKRISNAQLQTELVDILKNMFLPSKKMIKEQIEWLIEQKYMRRDD 768 (778)
Q Consensus 713 i~A~IVRiMK~~k~l~~~~L~~~v~~~l~~~F~p~~~~iK~~Ie~LIereyl~Rd~ 768 (778)
-+..|...+.....++..+|-.. +..+...+-+.|..|.++|||+|..
T Consensus 44 ~~~~iL~~l~~~~~~t~~ela~~--------l~i~~~tvs~~l~~Le~~Glv~r~~ 91 (155)
T 3cdh_A 44 PEWRVLACLVDNDAMMITRLAKL--------SLMEQSRMTRIVDQMDARGLVTRVA 91 (155)
T ss_dssp HHHHHHHHHSSCSCBCHHHHHHH--------TTCCHHHHHHHHHHHHHTTSEEECC
T ss_pred HHHHHHHHHHHCCCcCHHHHHHH--------HCCCHHHHHHHHHHHHHCCCEEecc
Confidence 34556666766777887766543 3467889999999999999999854
No 196
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=26.23 E-value=90 Score=29.52 Aligned_cols=48 Identities=6% Similarity=-0.000 Sum_probs=37.9
Q ss_pred cHHHHHHHHhhcCCCCCcccHHHHHHHcCCChHHHHHHHHHhhcccccccceeecc
Q psy14208 594 TTFQMAVLFAWNERPLDRLSFENLLLATELPDPELRRTLWSLVAFPKIKRQILLYS 649 (778)
Q Consensus 594 s~~Q~~ILl~FN~~~~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~~k~k~~iL~~~ 649 (778)
+..+..||.++.+ +.+|..+|++.+|++...+.++|..|...| ++...
T Consensus 19 d~~~~~IL~~L~~---~~~s~~eLA~~lglS~stv~~~l~~Le~~G-----lI~~~ 66 (192)
T 1uly_A 19 EDTRRKILKLLRN---KEMTISQLSEILGKTPQTIYHHIEKLKEAG-----LVEVK 66 (192)
T ss_dssp SHHHHHHHHHHTT---CCBCHHHHHHHHTCCHHHHHHHHHHHHHTT-----SEEEE
T ss_pred CHHHHHHHHHHHc---CCCCHHHHHHHHCcCHHHHHHHHHHHHHCC-----CEEEE
Confidence 4556667766654 579999999999999999999999998643 66644
No 197
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=26.08 E-value=45 Score=28.91 Aligned_cols=47 Identities=21% Similarity=0.255 Sum_probs=34.6
Q ss_pred hhhhhhhhccCCCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHhhhhcccccCC
Q psy14208 714 QEAIIKILKMRKRISNAQLQTELVDILKNMFLPSKKMIKEQIEWLIEQKYMRRDD 768 (778)
Q Consensus 714 ~A~IVRiMK~~k~l~~~~L~~~v~~~l~~~F~p~~~~iK~~Ie~LIereyl~Rd~ 768 (778)
+..|...+.....++..+|-..+ ..+.+.+.+.|..|.++|||+|.+
T Consensus 31 ~~~iL~~l~~~~~~~~~ela~~l--------~~s~~tvs~~l~~L~~~glv~~~~ 77 (138)
T 3bpv_A 31 QVACLLRIHREPGIKQDELATFF--------HVDKGTIARTLRRLEESGFIEREQ 77 (138)
T ss_dssp HHHHHHHHHHSTTCBHHHHHHHH--------TCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHcCCCCHHHHHHHH--------CCCHHHHHHHHHHHHHCCCEEeec
Confidence 34455555556778877666443 357889999999999999999953
No 198
>2ozu_A Histone acetyltransferase MYST3; structural genomics, structural G consortium, SGC; HET: ALY ACO; 2.30A {Homo sapiens} SCOP: d.108.1.1 PDB: 2rc4_A* 1m36_A
Probab=25.96 E-value=48 Score=33.26 Aligned_cols=28 Identities=21% Similarity=0.213 Sum_probs=22.8
Q ss_pred CCcccHHHHHHHcCCChHHHHHHHHHhh
Q psy14208 609 LDRLSFENLLLATELPDPELRRTLWSLV 636 (778)
Q Consensus 609 ~~~~t~~ei~~~t~i~~~~l~~~L~sL~ 636 (778)
.+.+|+++|++.|||..+++..+|+.|-
T Consensus 212 ~~~isi~~is~~T~i~~~DIi~tL~~l~ 239 (284)
T 2ozu_A 212 DKQISIKKLSKLTGICPQDITSTLHHLR 239 (284)
T ss_dssp ----CHHHHHHHHCBCHHHHHHHHHHTT
T ss_pred CCcEeHHHHHHHhCCCHHHHHHHHHHCC
Confidence 3679999999999999999999999884
No 199
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=25.85 E-value=17 Score=29.97 Aligned_cols=47 Identities=15% Similarity=0.058 Sum_probs=34.4
Q ss_pred hhccCC-CCChHHHHHHHHHHHhcCCCCChhh-HHHHHHHhhhhcccccCCCCCCce
Q psy14208 720 ILKMRK-RISNAQLQTELVDILKNMFLPSKKM-IKEQIEWLIEQKYMRRDDDDINVF 774 (778)
Q Consensus 720 iMK~~k-~l~~~~L~~~v~~~l~~~F~p~~~~-iK~~Ie~LIereyl~Rd~~d~~~y 774 (778)
.+.... .++..+|-..+ ..+... +-+.|..|.++|||++++.|+...
T Consensus 23 ~l~~~~~~~t~~eLa~~l--------~is~~t~vs~~l~~Le~~Glv~~~~~drR~~ 71 (95)
T 2pg4_A 23 EFEKKGYEPSLAEIVKAS--------GVSEKTFFMGLKDRLIRAGLVKEETLSYRVK 71 (95)
T ss_dssp HHHHTTCCCCHHHHHHHH--------CCCHHHHHTTHHHHHHHTTSEEEEEEETTEE
T ss_pred HHHhcCCCCCHHHHHHHH--------CCCchHHHHHHHHHHHHCCCeecCCCCCCeE
Confidence 334444 78888765443 257788 999999999999999887776433
No 200
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=25.58 E-value=1e+02 Score=26.80 Aligned_cols=29 Identities=3% Similarity=0.000 Sum_probs=26.7
Q ss_pred CCcccHHHHHHHcCCChHHHHHHHHHhhc
Q psy14208 609 LDRLSFENLLLATELPDPELRRTLWSLVA 637 (778)
Q Consensus 609 ~~~~t~~ei~~~t~i~~~~l~~~L~sL~~ 637 (778)
++.+|..+|++.+|++...+.+.|..|..
T Consensus 29 ~~~~s~~ela~~l~is~~tv~~~l~~Le~ 57 (139)
T 2x4h_A 29 GEGAKINRIAKDLKIAPSSVFEEVSHLEE 57 (139)
T ss_dssp TSCBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHhCCChHHHHHHHHHHHH
Confidence 36799999999999999999999999985
No 201
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=25.47 E-value=63 Score=27.99 Aligned_cols=45 Identities=11% Similarity=0.207 Sum_probs=32.1
Q ss_pred hhhhhhhccCCCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHhhhhcccccC
Q psy14208 715 EAIIKILKMRKRISNAQLQTELVDILKNMFLPSKKMIKEQIEWLIEQKYMRRD 767 (778)
Q Consensus 715 A~IVRiMK~~k~l~~~~L~~~v~~~l~~~F~p~~~~iK~~Ie~LIereyl~Rd 767 (778)
..|...+.....++..+|.. .+ ..+.+.+-+.|..|.++|||+|.
T Consensus 37 ~~iL~~l~~~~~~~~~~la~----~l----~~~~~tvs~~l~~L~~~gli~r~ 81 (138)
T 1jgs_A 37 FKVLCSIRCAACITPVELKK----VL----SVDLGALTRMLDRLVCKGWVERL 81 (138)
T ss_dssp HHHHHHHHHHSSBCHHHHHH----HH----TCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHhcCCCCHHHHHH----HH----CCChHHHHHHHHHHHHCCCEEec
Confidence 34444555556677776653 22 36788999999999999999984
No 202
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=25.32 E-value=43 Score=30.12 Aligned_cols=57 Identities=9% Similarity=0.052 Sum_probs=39.7
Q ss_pred hhhhhccCCCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHhhhhcccccCCCCCCceEe
Q psy14208 717 IIKILKMRKRISNAQLQTELVDILKNMFLPSKKMIKEQIEWLIEQKYMRRDDDDINVFVY 776 (778)
Q Consensus 717 IVRiMK~~k~l~~~~L~~~v~~~l~~~F~p~~~~iK~~Ie~LIereyl~Rd~~d~~~y~Y 776 (778)
|.++|...+.++.++|...+.+.. ..++...|=+.++.|.+.|.|.+-..+.+...|
T Consensus 24 Il~~l~~~~h~ta~ei~~~l~~~~---~~is~~TVYR~L~~L~e~Glv~~i~~~~~~~~Y 80 (145)
T 3eyy_A 24 VLEAVDTLEHATPDDILGEVRKTA---SGINISTVYRTLELLEELGLVSHAHLGHGAPTY 80 (145)
T ss_dssp HHHHHHHHSSBCHHHHHHHHHTTC---TTCCHHHHHHHHHHHHHHTSEEEEECGGGCEEE
T ss_pred HHHHHHhcCCCCHHHHHHHHHhhC---CCCCHhHHHHHHHHHHHCCcEEEEEeCCCceEE
Confidence 344444444889998887775432 346789999999999999999986543333334
No 203
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=25.19 E-value=47 Score=28.81 Aligned_cols=50 Identities=14% Similarity=0.217 Sum_probs=33.4
Q ss_pred hhhhhhhccCCCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHhhhhcccccC--CCCCC
Q psy14208 715 EAIIKILKMRKRISNAQLQTELVDILKNMFLPSKKMIKEQIEWLIEQKYMRRD--DDDIN 772 (778)
Q Consensus 715 A~IVRiMK~~k~l~~~~L~~~v~~~l~~~F~p~~~~iK~~Ie~LIereyl~Rd--~~d~~ 772 (778)
..|...+...+.++..+|-.. +..+.+.+-+.|..|.++|||.|. +.|+.
T Consensus 36 ~~iL~~l~~~~~~~~~ela~~--------l~~~~~tvs~~l~~L~~~gli~r~~~~~d~r 87 (139)
T 3bja_A 36 FGVIQVLAKSGKVSMSKLIEN--------MGCVPSNMTTMIQRMKRDGYVMTEKNPNDQR 87 (139)
T ss_dssp HHHHHHHHHSCSEEHHHHHHH--------CSSCCTTHHHHHHHHHHTTSEEEEECSSCTT
T ss_pred HHHHHHHHHcCCcCHHHHHHH--------HCCChhHHHHHHHHHHHCCCeeeccCCCCCc
Confidence 334444445566666655432 345677899999999999999984 44443
No 204
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=24.92 E-value=60 Score=28.56 Aligned_cols=35 Identities=11% Similarity=0.143 Sum_probs=29.8
Q ss_pred CcccHHHHHHHcCCChHHHHHHHHHhhcccccccceeecc
Q psy14208 610 DRLSFENLLLATELPDPELRRTLWSLVAFPKIKRQILLYS 649 (778)
Q Consensus 610 ~~~t~~ei~~~t~i~~~~l~~~L~sL~~~~k~k~~iL~~~ 649 (778)
+.+|..+|++.+|++...+.+.|..|... +++.+.
T Consensus 21 ~~~~~~ela~~l~vs~~tvs~~l~~Le~~-----Glv~r~ 55 (142)
T 1on2_A 21 GYARVSDIAEALAVHPSSVTKMVQKLDKD-----EYLIYE 55 (142)
T ss_dssp SSCCHHHHHHHHTSCHHHHHHHHHHHHHT-----TSEEEE
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHC-----CCEEEe
Confidence 56999999999999999999999999853 266654
No 205
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=24.91 E-value=73 Score=26.58 Aligned_cols=40 Identities=10% Similarity=0.018 Sum_probs=31.8
Q ss_pred ecHHHHHHHHhhcCCCCCcccHHHHHHHcCCChHHHHHHHHHhh
Q psy14208 593 VTTFQMAVLFAWNERPLDRLSFENLLLATELPDPELRRTLWSLV 636 (778)
Q Consensus 593 ~s~~Q~~ILl~FN~~~~~~~t~~ei~~~t~i~~~~l~~~L~sL~ 636 (778)
+|.-|..||.++-+ ++|.+||++.+|++...++..+..+.
T Consensus 35 Lt~re~~Vl~l~~~----G~s~~EIA~~L~iS~~TV~~~l~ri~ 74 (99)
T 1p4w_A 35 LSPKESEVLRLFAE----GFLVTEIAKKLNRSIKTISSQKKSAM 74 (99)
T ss_dssp CCHHHHHHHHHHHH----TCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHc----CCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 46667777766543 58999999999999999998887765
No 206
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=24.65 E-value=65 Score=28.92 Aligned_cols=47 Identities=13% Similarity=0.192 Sum_probs=34.0
Q ss_pred hhhhhhhhccCCCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHhhhhcccccCC
Q psy14208 714 QEAIIKILKMRKRISNAQLQTELVDILKNMFLPSKKMIKEQIEWLIEQKYMRRDD 768 (778)
Q Consensus 714 ~A~IVRiMK~~k~l~~~~L~~~v~~~l~~~F~p~~~~iK~~Ie~LIereyl~Rd~ 768 (778)
+..|...+.....++..+|-..+ ..+...+-+.|..|.++|||+|..
T Consensus 54 ~~~iL~~l~~~~~~t~~ela~~l--------~is~~tvs~~l~~Le~~Gli~r~~ 100 (162)
T 3cjn_A 54 KMRALAILSAKDGLPIGTLGIFA--------VVEQSTLSRALDGLQADGLVRREV 100 (162)
T ss_dssp HHHHHHHHHHSCSEEHHHHHHHH--------TCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHCCCCCHHHHHHHH--------CCChhHHHHHHHHHHHCCCEEecC
Confidence 44455555556677777665432 367889999999999999999853
No 207
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=24.21 E-value=58 Score=27.95 Aligned_cols=49 Identities=18% Similarity=0.115 Sum_probs=38.9
Q ss_pred ecHHHHHHHHhhcCCCCCcccHHHHHHHc--CCChHHHHHHHHHhhcccccccceeec
Q psy14208 593 VTTFQMAVLFAWNERPLDRLSFENLLLAT--ELPDPELRRTLWSLVAFPKIKRQILLY 648 (778)
Q Consensus 593 ~s~~Q~~ILl~FN~~~~~~~t~~ei~~~t--~i~~~~l~~~L~sL~~~~k~k~~iL~~ 648 (778)
+....-.||.++.+ ++.+|..+|++.+ |++...+.++|..|...| ++..
T Consensus 11 md~~d~~IL~~L~~--~g~~s~~eLA~~l~~giS~~aVs~rL~~Le~~G-----LV~~ 61 (111)
T 3b73_A 11 MTIWDDRILEIIHE--EGNGSPKELEDRDEIRISKSSVSRRLKKLADHD-----LLQP 61 (111)
T ss_dssp CCHHHHHHHHHHHH--HSCBCHHHHHTSTTCCSCHHHHHHHHHHHHHTT-----SEEE
T ss_pred cCHHHHHHHHHHHH--cCCCCHHHHHHHHhcCCCHHHHHHHHHHHHHCC-----CEEe
Confidence 34556677777755 3689999999999 999999999999998643 6664
No 208
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=24.20 E-value=75 Score=28.46 Aligned_cols=65 Identities=9% Similarity=0.020 Sum_probs=46.7
Q ss_pred EecHHHHHHHHhhcCCCCCcccHHHHHHHc-----CCChHHHHHHHHHhhcccccccceeecccCCCCCCCCCCCCeEEE
Q psy14208 592 DVTTFQMAVLFAWNERPLDRLSFENLLLAT-----ELPDPELRRTLWSLVAFPKIKRQILLYSEEVQSPKDFTEHTSFWI 666 (778)
Q Consensus 592 ~~s~~Q~~ILl~FN~~~~~~~t~~ei~~~t-----~i~~~~l~~~L~sL~~~~k~k~~iL~~~~~~~~~~~~~~~~~f~l 666 (778)
.+|.--..||-.+.+. ...+|.++|.+.+ +++...+-|+|..|...| ++.+...+ .....|.+
T Consensus 19 r~T~qR~~Il~~L~~~-~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G-----lv~~~~~~------~~~~~Y~~ 86 (145)
T 2fe3_A 19 RITPQRHAILEYLVNS-MAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESG-----LVKELTYG------DASSRFDF 86 (145)
T ss_dssp CCCHHHHHHHHHHHHC-SSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTT-----SEEEECCT------TSCCEEEE
T ss_pred CCCHHHHHHHHHHHhC-CCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCC-----CEEEEeeC------CCceEEEC
Confidence 3567777888777553 3679999999988 899999999999999754 66654311 02346776
Q ss_pred cc
Q psy14208 667 NQ 668 (778)
Q Consensus 667 N~ 668 (778)
+.
T Consensus 87 ~~ 88 (145)
T 2fe3_A 87 VT 88 (145)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 209
>4dhx_B Enhancer of yellow 2 transcription factor homolog, 80 kDa MCM3-associated protein; mRNA export, transport protein-DNA binding protein complex; 2.10A {Homo sapiens}
Probab=24.10 E-value=97 Score=26.09 Aligned_cols=34 Identities=9% Similarity=0.270 Sum_probs=17.8
Q ss_pred Hhhh-hHHHHHHHHHHhcCCCChhHHHHHHHHHHh
Q psy14208 11 EDKW-PSMRPIVLKLLQQEPVSQNEWQNLFYAVHV 44 (778)
Q Consensus 11 e~~W-~~L~~ai~~i~~~~~~~~~sy~~lY~~vY~ 44 (778)
+.|| ..++..+..++...+..+.+|.+|+..|--
T Consensus 39 EcGW~Devr~~~r~~i~~~g~~~vt~~~L~~~I~P 73 (101)
T 4dhx_B 39 ECGWKDQLKAHCKEVIKEKGLEHVTVDDLVAEITP 73 (101)
T ss_dssp HTTHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHHH
T ss_pred HCCcHHHHHHHHHHHHHHcCCCCCCHHHHHHHHhH
Confidence 3455 445555555554434445566666655543
No 210
>3to7_A Histone acetyltransferase ESA1; MYST family; HET: ALY COA; 1.90A {Saccharomyces cerevisiae} SCOP: d.108.1.1 PDB: 3to6_A* 1fy7_A* 1mja_A* 1mjb_A* 3to9_A* 1mj9_A*
Probab=24.07 E-value=54 Score=32.76 Aligned_cols=40 Identities=10% Similarity=0.174 Sum_probs=30.6
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHcCCChHHHHHHHHHhh
Q psy14208 596 FQMAVLFAWNERPLDRLSFENLLLATELPDPELRRTLWSLV 636 (778)
Q Consensus 596 ~Q~~ILl~FN~~~~~~~t~~ei~~~t~i~~~~l~~~L~sL~ 636 (778)
....|+-.+-+. .+.+|+++|++.|||..+++..+|+.|-
T Consensus 194 W~~~i~~~L~~~-~~~isi~~is~~Tgi~~~Dii~tL~~l~ 233 (276)
T 3to7_A 194 WSDTLITLLVEH-QKEITIDEISSMTSMTTTDILHTAKTLN 233 (276)
T ss_dssp HHHHHHHHHHHT-CSEEEHHHHHHHHCBCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhc-CCceeHHHHHHHhCCCHHHHHHHHHHCC
Confidence 344444444332 3689999999999999999999999884
No 211
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=23.94 E-value=63 Score=28.99 Aligned_cols=48 Identities=19% Similarity=0.323 Sum_probs=34.7
Q ss_pred hhhhhhhhhccCCCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHhhhhcccccCC
Q psy14208 713 VQEAIIKILKMRKRISNAQLQTELVDILKNMFLPSKKMIKEQIEWLIEQKYMRRDD 768 (778)
Q Consensus 713 i~A~IVRiMK~~k~l~~~~L~~~v~~~l~~~F~p~~~~iK~~Ie~LIereyl~Rd~ 768 (778)
-+..|...+.....++..+|-..+ ..+...+-+.|..|.++|||+|..
T Consensus 50 ~~~~iL~~l~~~~~~t~~ela~~l--------~is~~tvs~~l~~Le~~glv~r~~ 97 (162)
T 2fa5_A 50 PEWRVITILALYPGSSASEVSDRT--------AMDKVAVSRAVARLLERGFIRRET 97 (162)
T ss_dssp HHHHHHHHHHHSTTCCHHHHHHHH--------TCCHHHHHHHHHHHHHTTSEEC--
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHH--------CCCHHHHHHHHHHHHHCCCEeeec
Confidence 345566666667778877665433 357788999999999999999954
No 212
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=23.94 E-value=78 Score=27.96 Aligned_cols=52 Identities=10% Similarity=0.078 Sum_probs=39.3
Q ss_pred hhhhhhhcc-C-CCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHhhhhcccccCCC
Q psy14208 715 EAIIKILKM-R-KRISNAQLQTELVDILKNMFLPSKKMIKEQIEWLIEQKYMRRDDD 769 (778)
Q Consensus 715 A~IVRiMK~-~-k~l~~~~L~~~v~~~l~~~F~p~~~~iK~~Ie~LIereyl~Rd~~ 769 (778)
-+|..++.. . +.++.++|...+.+.. -..+...|=+.++.|.+.|.|.+-..
T Consensus 21 ~~Il~~L~~~~~~~~sa~ei~~~l~~~~---~~is~aTVYR~L~~L~e~Glv~~~~~ 74 (136)
T 1mzb_A 21 VKILQMLDSAEQRHMSAEDVYKALMEAG---EDVGLATVYRVLTQFEAAGLVVRHNF 74 (136)
T ss_dssp HHHHHHHHCC-CCSBCHHHHHHHHHHTT---CCCCHHHHHHHHHHHHHHTSEEEECS
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHhhC---CCCCHHHHHHHHHHHHHCCcEEEEEe
Confidence 345555554 3 5799999998886542 24678899999999999999998654
No 213
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=23.88 E-value=89 Score=27.75 Aligned_cols=58 Identities=14% Similarity=-0.006 Sum_probs=41.8
Q ss_pred hhhhhhcc-CCCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHhhhhcccccCCCCCCceEe
Q psy14208 716 AIIKILKM-RKRISNAQLQTELVDILKNMFLPSKKMIKEQIEWLIEQKYMRRDDDDINVFVY 776 (778)
Q Consensus 716 ~IVRiMK~-~k~l~~~~L~~~v~~~l~~~F~p~~~~iK~~Ie~LIereyl~Rd~~d~~~y~Y 776 (778)
+|.++|.. .+.++.++|...+.+.. -.++...|=+.++.|.+.|.|.+-..+.+...|
T Consensus 18 ~Il~~L~~~~~h~sa~eI~~~l~~~~---~~is~aTVYR~L~~L~e~Glv~~~~~~~g~~~Y 76 (139)
T 3mwm_A 18 AVSAALQEVEEFRSAQELHDMLKHKG---DAVGLTTVYRTLQSLADAGEVDVLRTAEGESVY 76 (139)
T ss_dssp HHHHHHTTCSSCEEHHHHHHHHHHTT---CCCCHHHHHHHHHHHHHTTSSEEEECTTSCEEE
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhC---CCCCHHHHHHHHHHHHHCCCEEEEEcCCCceEE
Confidence 44555554 45799999998886532 346889999999999999999986543333344
No 214
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=23.69 E-value=29 Score=32.26 Aligned_cols=52 Identities=10% Similarity=0.114 Sum_probs=40.0
Q ss_pred ecHHHHHHHHhhcCCCC-CcccHHHHHHHcCCChHHHHHHHHHhhcccccccceeecc
Q psy14208 593 VTTFQMAVLFAWNERPL-DRLSFENLLLATELPDPELRRTLWSLVAFPKIKRQILLYS 649 (778)
Q Consensus 593 ~s~~Q~~ILl~FN~~~~-~~~t~~ei~~~t~i~~~~l~~~L~sL~~~~k~k~~iL~~~ 649 (778)
+|..|..||..+...+. +.+|..+|++.++++...+.+.|..|... +++.+.
T Consensus 67 lt~~~~~iL~~L~~~~~~~~~t~~eLa~~l~is~~tvs~~l~~Le~~-----GlV~r~ 119 (181)
T 2fbk_A 67 LNAAGWDLLLTLYRSAPPEGLRPTELSALAAISGPSTSNRIVRLLEK-----GLIERR 119 (181)
T ss_dssp CCHHHHHHHHHHHHHCCSSCBCHHHHHHHCSCCSGGGSSHHHHHHHH-----TSEECC
T ss_pred CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC-----cCEEec
Confidence 46778888877755211 24999999999999999999999999852 267654
No 215
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=23.58 E-value=58 Score=26.39 Aligned_cols=39 Identities=13% Similarity=0.193 Sum_probs=30.6
Q ss_pred cHHHHHHHHhhcCCCCCcccHHHHHHHcCCChHHHHHHHHHhh
Q psy14208 594 TTFQMAVLFAWNERPLDRLSFENLLLATELPDPELRRTLWSLV 636 (778)
Q Consensus 594 s~~Q~~ILl~FN~~~~~~~t~~ei~~~t~i~~~~l~~~L~sL~ 636 (778)
|.-|.-|+.++- .++|.+||++.+|++...++.++....
T Consensus 31 t~~e~~vl~l~~----~g~s~~eIA~~l~is~~tV~~~l~r~~ 69 (91)
T 2rnj_A 31 TEREMEILLLIA----KGYSNQEIASASHITIKTVKTHVSNIL 69 (91)
T ss_dssp CSHHHHHHHHHH----TTCCTTHHHHHHTCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH----cCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 555666666653 358999999999999999998887665
No 216
>2q2k_A Hypothetical protein; protein-DNA, partition, segregation, PARB, DNA binding protein/DNA complex; HET: DNA 5IU EPE; 3.00A {Staphylococcus aureus}
Probab=23.34 E-value=39 Score=24.61 Aligned_cols=35 Identities=14% Similarity=0.259 Sum_probs=27.9
Q ss_pred hHHHHHHHHHhhhhhcCCch--HHHHHHHHHHHHHhH
Q psy14208 289 ETLKLELMMKLLDRIKDGIT--PMLQDLEAHIVNAGL 323 (778)
Q Consensus 289 ~~~~L~~ly~l~~~~~~~~~--~l~~~~~~~i~~~g~ 323 (778)
+.+|.-.+|.++..++.|.. .++++++.||.+.|.
T Consensus 32 kkedypqifdflenvprgtktahirealrryieeige 68 (70)
T 2q2k_A 32 KKEDYPQIFDFLENVPRGTKTAHIREALRRYIEEIGE 68 (70)
T ss_dssp ETTTSHHHHHHHTTSCTTCHHHHHHHHHHHHHHHCC-
T ss_pred hhhhchHHHHHHHcCCCccchHHHHHHHHHHHHHhcc
Confidence 34667788999999987764 578999999998885
No 217
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=23.34 E-value=76 Score=27.89 Aligned_cols=44 Identities=7% Similarity=0.121 Sum_probs=30.9
Q ss_pred hhhhhhccCCCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHhhhhcccccC
Q psy14208 716 AIIKILKMRKRISNAQLQTELVDILKNMFLPSKKMIKEQIEWLIEQKYMRRD 767 (778)
Q Consensus 716 ~IVRiMK~~k~l~~~~L~~~v~~~l~~~F~p~~~~iK~~Ie~LIereyl~Rd 767 (778)
.|...+.....++..+|-.. +..+...+-+.|..|.++|||+|.
T Consensus 46 ~iL~~l~~~~~~t~~ela~~--------l~~~~~tvs~~l~~Le~~Glv~r~ 89 (150)
T 2rdp_A 46 VALQWLLEEGDLTVGELSNK--------MYLACSTTTDLVDRMERNGLVARV 89 (150)
T ss_dssp HHHHHHHHHCSBCHHHHHHH--------HTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHcCCCCHHHHHHH--------HCCCchhHHHHHHHHHHCCCeeec
Confidence 34444444456666655433 346788999999999999999985
No 218
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=23.09 E-value=97 Score=25.85 Aligned_cols=24 Identities=8% Similarity=0.097 Sum_probs=20.6
Q ss_pred CcccHHHHHHHcCCChHHHHHHHH
Q psy14208 610 DRLSFENLLLATELPDPELRRTLW 633 (778)
Q Consensus 610 ~~~t~~ei~~~t~i~~~~l~~~L~ 633 (778)
+.+|++||++.+|++...++..+.
T Consensus 38 e~~s~~EIA~~lgiS~~tVr~~~~ 61 (99)
T 3t72_q 38 TDYTLEEVGKQFDVTRERIRQIEA 61 (99)
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHH
Confidence 579999999999999988876654
No 219
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=22.97 E-value=37 Score=27.88 Aligned_cols=28 Identities=11% Similarity=-0.036 Sum_probs=22.5
Q ss_pred CCCChhhHHHHHHHhhhhcccccCCCCCC
Q psy14208 744 FLPSKKMIKEQIEWLIEQKYMRRDDDDIN 772 (778)
Q Consensus 744 F~p~~~~iK~~Ie~LIereyl~Rd~~d~~ 772 (778)
+..+.+.+-+.|..|.++||| +++.|+.
T Consensus 40 l~i~~~tvs~~l~~Le~~Glv-~~~~d~R 67 (95)
T 2qvo_A 40 VNSPHSYVWLIIKKFEEAKMV-ECELEGR 67 (95)
T ss_dssp SSSCHHHHHHHHHHHHHTTSE-EEEEETT
T ss_pred HCcCHHHHHHHHHHHHHCcCc-cCCCCCC
Confidence 456788999999999999999 5555543
No 220
>1dp3_A TRAM protein; helix-loop-helix, DNA binding protein; NMR {Escherichia coli} SCOP: a.55.1.2
Probab=22.92 E-value=29 Score=25.56 Aligned_cols=44 Identities=16% Similarity=0.243 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHhcCCcCC-hHhHHHHHHHHHhhcCCCCchhhhhHHhH
Q psy14208 156 QRLQDSAMKLVQSERNGEAFD-SQLVIGVRESYVNLCSNPEDKLQIYREHF 205 (778)
Q Consensus 156 ~~l~~~ll~~I~~~R~g~~id-~~~i~~v~~~~~~l~~~~~~~~~~Y~~~F 205 (778)
+++.+.+-+++...|....-+ .-.+.++..||++|| +.+|+-.-
T Consensus 9 ~~v~~~I~~ive~r~qeGA~~~dvs~Ssv~smLleLG------LrVYe~q~ 53 (55)
T 1dp3_A 9 DEIVYKINKIVERRRAEGAKSTDVSFSSISTMLLELG------LRVYEAQM 53 (55)
T ss_dssp CTHHHHHHHHHHHHHHHTCCSTTCCHHHHHHHHHHHT------TSHHHHTT
T ss_pred hHHHHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHh------HHHHHHhh
Confidence 334455556677777543321 223557788999998 56887543
No 221
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=22.90 E-value=93 Score=26.54 Aligned_cols=40 Identities=10% Similarity=0.007 Sum_probs=27.9
Q ss_pred cHHHHHHHHhhcCCCCCcccHHHHHHHcCCChHHHHHHHHHhh
Q psy14208 594 TTFQMAVLFAWNERPLDRLSFENLLLATELPDPELRRTLWSLV 636 (778)
Q Consensus 594 s~~Q~~ILl~FN~~~~~~~t~~ei~~~t~i~~~~l~~~L~sL~ 636 (778)
|.-|-.|+.+.-- .++|++||++.+|++...+...+....
T Consensus 27 ~~~~r~vl~l~~~---~g~s~~EIA~~lgiS~~tV~~~l~ra~ 66 (113)
T 1xsv_A 27 TNKQRNYLELFYL---EDYSLSEIADTFNVSRQAVYDNIRRTG 66 (113)
T ss_dssp CHHHHHHHHHHHT---SCCCHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH---cCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 4445555544321 358999999999999998887766443
No 222
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=22.86 E-value=44 Score=29.36 Aligned_cols=48 Identities=8% Similarity=0.196 Sum_probs=35.4
Q ss_pred hhhhhhhhhccCCCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHhhhhcccccCC
Q psy14208 713 VQEAIIKILKMRKRISNAQLQTELVDILKNMFLPSKKMIKEQIEWLIEQKYMRRDD 768 (778)
Q Consensus 713 i~A~IVRiMK~~k~l~~~~L~~~v~~~l~~~F~p~~~~iK~~Ie~LIereyl~Rd~ 768 (778)
-+..|..++...+.++..+|-..+ ..+.+.+.+.|+.|.++|||+|.+
T Consensus 37 ~q~~vL~~l~~~~~~t~~eLa~~l--------~~~~~tvs~~l~~L~~~Glv~r~~ 84 (140)
T 3hsr_A 37 TGYIVLMAIENDEKLNIKKLGERV--------FLDSGTLTPLLKKLEKKDYVVRTR 84 (140)
T ss_dssp HHHHHHHHSCTTCEEEHHHHHHHH--------TCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHHHHHcCCcCHHHHHHHH--------CCChhhHHHHHHHHHHCCCeEecC
Confidence 344555666666777777665443 357889999999999999999864
No 223
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=22.64 E-value=53 Score=28.57 Aligned_cols=47 Identities=19% Similarity=0.210 Sum_probs=33.5
Q ss_pred hhhhhhhhccCC--CCChHHHHHHHHHHHhcCCCCChhhHHHHHHHhhhhcccccCC
Q psy14208 714 QEAIIKILKMRK--RISNAQLQTELVDILKNMFLPSKKMIKEQIEWLIEQKYMRRDD 768 (778)
Q Consensus 714 ~A~IVRiMK~~k--~l~~~~L~~~v~~~l~~~F~p~~~~iK~~Ie~LIereyl~Rd~ 768 (778)
+..|...+.... .++..+|-..+ ..+...+.+.|..|.++|||+|.+
T Consensus 36 ~~~iL~~l~~~~~~~~~~~ela~~l--------~~~~~tvs~~l~~Le~~Gli~r~~ 84 (141)
T 3bro_A 36 QMTIIDYLSRNKNKEVLQRDLESEF--------SIKSSTATVLLQRMEIKKLLYRKV 84 (141)
T ss_dssp HHHHHHHHHHTTTSCCBHHHHHHHH--------TCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHCCCCCcCHHHHHHHH--------CCCcchHHHHHHHHHHCCCEEeeC
Confidence 344455555554 67877665433 357888999999999999999853
No 224
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=22.23 E-value=51 Score=28.70 Aligned_cols=46 Identities=13% Similarity=0.175 Sum_probs=32.3
Q ss_pred hhhhhhhhccCC--CCChHHHHHHHHHHHhcCCCCChhhHHHHHHHhhhhcccccC
Q psy14208 714 QEAIIKILKMRK--RISNAQLQTELVDILKNMFLPSKKMIKEQIEWLIEQKYMRRD 767 (778)
Q Consensus 714 ~A~IVRiMK~~k--~l~~~~L~~~v~~~l~~~F~p~~~~iK~~Ie~LIereyl~Rd 767 (778)
+..|...+-... .++..+|-..+ ..+.+.+-+.|+.|.++|||+|.
T Consensus 33 ~~~vL~~l~~~~~~~~t~~ela~~l--------~~~~~tvs~~l~~Le~~Gli~r~ 80 (139)
T 3eco_A 33 QGHTLGYLYAHQQDGLTQNDIAKAL--------QRTGPTVSNLLRNLERKKLIYRY 80 (139)
T ss_dssp HHHHHHHHHHSTTTCEEHHHHHHHH--------TCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHhcCCCCcCHHHHHHHh--------CCCcccHHHHHHHHHHCCCEeec
Confidence 344444444443 77777665433 36788999999999999999985
No 225
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=22.14 E-value=46 Score=29.29 Aligned_cols=43 Identities=19% Similarity=0.200 Sum_probs=31.9
Q ss_pred cCCCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHhhhhcccccC--CCCCCc
Q psy14208 723 MRKRISNAQLQTELVDILKNMFLPSKKMIKEQIEWLIEQKYMRRD--DDDINV 773 (778)
Q Consensus 723 ~~k~l~~~~L~~~v~~~l~~~F~p~~~~iK~~Ie~LIereyl~Rd--~~d~~~ 773 (778)
..+.++..+|-..+ ..+.+.+-+.+..|.++|||+|. +.|+..
T Consensus 38 ~~~~~t~~ela~~l--------~~~~stvs~~l~~L~~~G~v~r~~~~~d~r~ 82 (152)
T 1ku9_A 38 SDKPLTISDIMEEL--------KISKGNVSMSLKKLEELGFVRKVWIKGERKN 82 (152)
T ss_dssp CSSCEEHHHHHHHH--------TCCHHHHHHHHHHHHHTTSEEEECCTTCSSC
T ss_pred cCCCCCHHHHHHHH--------CcCHHHHHHHHHHHHHCCCEEEEecCCCceE
Confidence 34678877666444 25778899999999999999996 445443
No 226
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=21.81 E-value=74 Score=28.50 Aligned_cols=59 Identities=10% Similarity=0.004 Sum_probs=42.0
Q ss_pred hhhhhhhcc-CCCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHhhhhcccccCCCCCCceEe
Q psy14208 715 EAIIKILKM-RKRISNAQLQTELVDILKNMFLPSKKMIKEQIEWLIEQKYMRRDDDDINVFVY 776 (778)
Q Consensus 715 A~IVRiMK~-~k~l~~~~L~~~v~~~l~~~F~p~~~~iK~~Ie~LIereyl~Rd~~d~~~y~Y 776 (778)
-+|..++.. .+.++.++|...+.+.. -..+...|=+.++.|.+.|+|.+-..+.....|
T Consensus 25 ~~Il~~L~~~~~~~sa~ei~~~l~~~~---~~is~aTVYR~L~~L~e~Glv~~~~~~~~~~~Y 84 (145)
T 2fe3_A 25 HAILEYLVNSMAHPTADDIYKALEGKF---PNMSVATVYNNLRVFRESGLVKELTYGDASSRF 84 (145)
T ss_dssp HHHHHHHHHCSSCCCHHHHHHHHGGGC---TTCCHHHHHHHHHHHHHTTSEEEECCTTSCCEE
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhC---CCCChhhHHHHHHHHHHCCCEEEEeeCCCceEE
Confidence 345555544 56799998887775431 245788999999999999999987654334444
No 227
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=21.77 E-value=68 Score=28.58 Aligned_cols=46 Identities=7% Similarity=0.049 Sum_probs=33.6
Q ss_pred hhhhhhhhccCCCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHhhhhcccccC
Q psy14208 714 QEAIIKILKMRKRISNAQLQTELVDILKNMFLPSKKMIKEQIEWLIEQKYMRRD 767 (778)
Q Consensus 714 ~A~IVRiMK~~k~l~~~~L~~~v~~~l~~~F~p~~~~iK~~Ie~LIereyl~Rd 767 (778)
+..|...+.....++..+|... +..+...+-+.|..|.++|||+|.
T Consensus 46 ~~~iL~~l~~~~~~t~~ela~~--------l~is~~tvs~~l~~Le~~Gli~r~ 91 (154)
T 2eth_A 46 ELYAFLYVALFGPKKMKEIAEF--------LSTTKSNVTNVVDSLEKRGLVVRE 91 (154)
T ss_dssp HHHHHHHHHHHCCBCHHHHHHH--------TTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHcCCCCHHHHHHH--------HCCCHHHHHHHHHHHHHCCCEEee
Confidence 4445555555567777766533 346788999999999999999984
No 228
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=21.76 E-value=70 Score=28.12 Aligned_cols=48 Identities=17% Similarity=0.243 Sum_probs=37.0
Q ss_pred hhhhhhhhhccCCCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHhhhhcccccCC
Q psy14208 713 VQEAIIKILKMRKRISNAQLQTELVDILKNMFLPSKKMIKEQIEWLIEQKYMRRDD 768 (778)
Q Consensus 713 i~A~IVRiMK~~k~l~~~~L~~~v~~~l~~~F~p~~~~iK~~Ie~LIereyl~Rd~ 768 (778)
++..|.+.+.....++..+|-..+ ..+...+.+++..|.+.|+|+|-.
T Consensus 5 ~~~~il~~L~~~~~~~~~ela~~l--------g~s~~tv~~~l~~L~~~G~i~~~~ 52 (141)
T 1i1g_A 5 RDKIILEILEKDARTPFTEIAKKL--------GISETAVRKRVKALEEKGIIEGYT 52 (141)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHH--------TSCHHHHHHHHHHHHHHTSSCCCC
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHH--------CcCHHHHHHHHHHHHHCCCEeccc
Confidence 345567777777788888766544 257899999999999999998753
No 229
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=21.53 E-value=76 Score=28.46 Aligned_cols=50 Identities=16% Similarity=0.118 Sum_probs=36.5
Q ss_pred hhhhhccCCCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHhhhhcccccCCC--CCCceEe
Q psy14208 717 IIKILKMRKRISNAQLQTELVDILKNMFLPSKKMIKEQIEWLIEQKYMRRDDD--DINVFVY 776 (778)
Q Consensus 717 IVRiMK~~k~l~~~~L~~~v~~~l~~~F~p~~~~iK~~Ie~LIereyl~Rd~~--d~~~y~Y 776 (778)
|++.+. .+.++..+|-..+ ..+...+-++|..|.++|+|+|... |+ ...|
T Consensus 29 IL~~L~-~g~~~~~eLa~~l--------gis~~tls~~L~~Le~~GlI~r~~~~~d~-~~~y 80 (146)
T 2f2e_A 29 IVRDAF-EGLTRFGEFQKSL--------GLAKNILAARLRNLVEHGVMVAVPAESGS-HQEY 80 (146)
T ss_dssp HHHHHH-TTCCSHHHHHHHH--------CCCHHHHHHHHHHHHHTTSEEEEECSSSS-CEEE
T ss_pred HHHHHH-hCCCCHHHHHHHh--------CCCHHHHHHHHHHHHHCCCEEEEecCCCC-eEEE
Confidence 555553 5678888776443 2578899999999999999998543 55 4444
No 230
>1yg2_A Gene activator APHA; virulence factor, winged helix, transcripti factor, transcription; 2.20A {Vibrio cholerae} SCOP: a.4.5.61
Probab=21.36 E-value=68 Score=29.86 Aligned_cols=56 Identities=11% Similarity=0.175 Sum_probs=45.5
Q ss_pred hhhhhhhhhhccCCCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHhhhhcccccCC
Q psy14208 712 RVQEAIIKILKMRKRISNAQLQTELVDILKNMFLPSKKMIKEQIEWLIEQKYMRRDD 768 (778)
Q Consensus 712 ~i~A~IVRiMK~~k~l~~~~L~~~v~~~l~~~F~p~~~~iK~~Ie~LIereyl~Rd~ 768 (778)
.++-+|..++.. +.++-.+|...+.......+.++...|-..+..|-+.|+|++..
T Consensus 2 ~l~~~iL~lL~~-~~~~gyel~~~l~~~~~~~~~~s~~~ly~~L~~Le~~GlI~~~~ 57 (179)
T 1yg2_A 2 SLPHVILTVLST-RDATGYDITKEFSASIGYFWKASHQQVYRELNKMGEQGLVTCVL 57 (179)
T ss_dssp CHHHHHHHHHHH-CCBCHHHHHHHHTTGGGGTCCCCHHHHHHHHHHHHHTTSEEECC
T ss_pred chHHHHHHHHhc-CCCCHHHHHHHHHHHhCCccCCCcCcHHHHHHHHHHCCCeEEEe
Confidence 355667777764 78999999988866665556899999999999999999999864
No 231
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=21.17 E-value=88 Score=27.39 Aligned_cols=51 Identities=18% Similarity=-0.017 Sum_probs=39.3
Q ss_pred ecHHHHHHHHhhcCCCCCcccHHHHHHHc-----CCChHHHHHHHHHhhcccccccceeecc
Q psy14208 593 VTTFQMAVLFAWNERPLDRLSFENLLLAT-----ELPDPELRRTLWSLVAFPKIKRQILLYS 649 (778)
Q Consensus 593 ~s~~Q~~ILl~FN~~~~~~~t~~ei~~~t-----~i~~~~l~~~L~sL~~~~k~k~~iL~~~ 649 (778)
+|.--..||-.|.+. .+.+|.+||.+.+ +++...+-|+|..|...| ++.+.
T Consensus 9 ~T~qR~~Il~~l~~~-~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~G-----lv~~~ 64 (131)
T 2o03_A 9 STRQRAAISTLLETL-DDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSG-----LVDTL 64 (131)
T ss_dssp HHHHHHHHHHHHHHC-CSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTT-----SEEEE
T ss_pred CCHHHHHHHHHHHhC-CCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC-----CEEEE
Confidence 345556777777542 3679999999988 899999999999999754 66654
No 232
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=21.15 E-value=81 Score=28.43 Aligned_cols=59 Identities=10% Similarity=0.138 Sum_probs=43.1
Q ss_pred hhhhhhhcc-CCCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHhhhhcccccCCCCCCceEe
Q psy14208 715 EAIIKILKM-RKRISNAQLQTELVDILKNMFLPSKKMIKEQIEWLIEQKYMRRDDDDINVFVY 776 (778)
Q Consensus 715 A~IVRiMK~-~k~l~~~~L~~~v~~~l~~~F~p~~~~iK~~Ie~LIereyl~Rd~~d~~~y~Y 776 (778)
.+|..++.. .+.++.++|...+.+.. -.++...|=+.++.|.+.|+|.+-..+.+...|
T Consensus 30 ~~IL~~l~~~~~~~sa~ei~~~l~~~~---~~is~aTVYR~L~~L~e~Glv~~~~~~~~~~~Y 89 (150)
T 2xig_A 30 EEVVSVLYRSGTHLSPEEITHSIRQKD---KNTSISSVYRILNFLEKENFISVLETSKSGRRY 89 (150)
T ss_dssp HHHHHHHHHCSSCBCHHHHHHHHHHHS---TTCCHHHHHHHHHHHHHTTSEEEEEETTTEEEE
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhC---CCCCHhhHHHHHHHHHHCCcEEEEEeCCCceEE
Confidence 345555554 46799999998887643 246788999999999999999986544344444
No 233
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=21.06 E-value=58 Score=28.90 Aligned_cols=48 Identities=13% Similarity=0.138 Sum_probs=33.5
Q ss_pred hhhhhhhhhccCCCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHhhhhcccccCC
Q psy14208 713 VQEAIIKILKMRKRISNAQLQTELVDILKNMFLPSKKMIKEQIEWLIEQKYMRRDD 768 (778)
Q Consensus 713 i~A~IVRiMK~~k~l~~~~L~~~v~~~l~~~F~p~~~~iK~~Ie~LIereyl~Rd~ 768 (778)
-+..|...+.....++..+|-..+ ..+.+.+-+.|..|.++|||+|..
T Consensus 42 ~q~~iL~~l~~~~~~~~~eLa~~l--------~~~~~~vs~~l~~L~~~Glv~r~~ 89 (149)
T 4hbl_A 42 SQYLVMLTLWEENPQTLNSIGRHL--------DLSSNTLTPMLKRLEQSGWVKRER 89 (149)
T ss_dssp HHHHHHHHHHHSSSEEHHHHHHHH--------TCCHHHHHHHHHHHHHHTSEEC--
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHH--------CCCHHHHHHHHHHHHHCCCEeeCC
Confidence 344555555556677776655443 367889999999999999999864
No 234
>1ufm_A COP9 complex subunit 4; helix-turn-helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.4.5.47
Probab=21.05 E-value=81 Score=25.52 Aligned_cols=32 Identities=16% Similarity=0.315 Sum_probs=28.5
Q ss_pred CCcccHHHHHHHcCCChHHHHHHHHHhhcccc
Q psy14208 609 LDRLSFENLLLATELPDPELRRTLWSLVAFPK 640 (778)
Q Consensus 609 ~~~~t~~ei~~~t~i~~~~l~~~L~sL~~~~k 640 (778)
+..++++.|++.++++.+++...|..|+..++
T Consensus 28 Y~~Isl~~La~ll~ls~~~vE~~ls~mI~~~~ 59 (84)
T 1ufm_A 28 YNNITFEELGALLEIPAAKAEKIASQMITEGR 59 (84)
T ss_dssp CSEEEHHHHHHHTTSCHHHHHHHHHHHHHTTS
T ss_pred cCeeeHHHHHHHHCcCHHHHHHHHHHHHhCCc
Confidence 57899999999999999999999999986544
No 235
>4esf_A PADR-like transcriptional regulator; PADR family, DNA binding protein, HTH fold; 2.20A {Bacillus cereus}
Probab=20.97 E-value=1.6e+02 Score=25.29 Aligned_cols=57 Identities=11% Similarity=0.177 Sum_probs=48.0
Q ss_pred hhhhhhhhhhhhhhccCCCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHhhhhcccccC
Q psy14208 708 LRILRVQEAIIKILKMRKRISNAQLQTELVDILKNMFLPSKKMIKEQIEWLIEQKYMRRD 767 (778)
Q Consensus 708 ~R~~~i~A~IVRiMK~~k~l~~~~L~~~v~~~l~~~F~p~~~~iK~~Ie~LIereyl~Rd 767 (778)
-++-.++.+|..++. .+.++--+|...+.+. +.+.++...+=..+..|-++|+|++.
T Consensus 7 l~~g~l~~~IL~lL~-~~p~~Gyei~~~l~~~--g~~~is~gtlY~~L~rLe~~GlI~~~ 63 (117)
T 4esf_A 7 MLKGSLEGCVLEIIS-RRETYGYEITRHLNDL--GFTEVVEGTVYTILVRLEKKKLVNIE 63 (117)
T ss_dssp HHHHHHHHHHHHHHH-HSCBCHHHHHHHHHHH--TCTTCCHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHChHHHHHHHHHH-cCCCCHHHHHHHHHHc--CCCCCCccHHHHHHHHHHHCCCEEEE
Confidence 355678888888887 4788899999998764 55688999999999999999999985
No 236
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=20.92 E-value=52 Score=27.67 Aligned_cols=50 Identities=18% Similarity=0.112 Sum_probs=35.9
Q ss_pred hhhhhhhhhccCCCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHhhhhcccccCCCCC
Q psy14208 713 VQEAIIKILKMRKRISNAQLQTELVDILKNMFLPSKKMIKEQIEWLIEQKYMRRDDDDI 771 (778)
Q Consensus 713 i~A~IVRiMK~~k~l~~~~L~~~v~~~l~~~F~p~~~~iK~~Ie~LIereyl~Rd~~d~ 771 (778)
....|.+.+ ..+.++..+|... +..+...+.+.+..|.+.|+|.+..+.+
T Consensus 22 ~r~~IL~~L-~~~~~~~~ela~~--------l~is~~tv~~~l~~L~~~gli~~~~~gr 71 (114)
T 2oqg_A 22 TRWEILTEL-GRADQSASSLATR--------LPVSRQAIAKHLNALQACGLVESVKVGR 71 (114)
T ss_dssp HHHHHHHHH-HHSCBCHHHHHHH--------SSSCHHHHHHHHHHHHHTTSEEEEEETT
T ss_pred HHHHHHHHH-HcCCCCHHHHHHH--------HCcCHHHHHHHHHHHHHCCCeeEEecCC
Confidence 334556666 4566777765533 4578899999999999999999865533
No 237
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=20.67 E-value=89 Score=26.73 Aligned_cols=41 Identities=12% Similarity=0.075 Sum_probs=28.6
Q ss_pred ecHHHHHHHHhhcCCCCCcccHHHHHHHcCCChHHHHHHHHHhh
Q psy14208 593 VTTFQMAVLFAWNERPLDRLSFENLLLATELPDPELRRTLWSLV 636 (778)
Q Consensus 593 ~s~~Q~~ILl~FN~~~~~~~t~~ei~~~t~i~~~~l~~~L~sL~ 636 (778)
.|.-|..|+.+.-- +++|++||++.+|++...+...+....
T Consensus 23 L~~~~r~vl~l~y~---~g~s~~EIA~~lgiS~~tV~~~l~ra~ 63 (113)
T 1s7o_A 23 LTDKQMNYIELYYA---DDYSLAEIADEFGVSRQAVYDNIKRTE 63 (113)
T ss_dssp SCHHHHHHHHHHHH---TCCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH---cCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 35555555544311 358999999999999998887776543
No 238
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=20.63 E-value=1.2e+02 Score=23.20 Aligned_cols=26 Identities=8% Similarity=-0.003 Sum_probs=21.5
Q ss_pred CcccHHHHHHHcCCChHHHHHHHHHh
Q psy14208 610 DRLSFENLLLATELPDPELRRTLWSL 635 (778)
Q Consensus 610 ~~~t~~ei~~~t~i~~~~l~~~L~sL 635 (778)
+++|++||++.+|++...+...+..-
T Consensus 29 ~~~s~~eIA~~l~is~~tV~~~~~ra 54 (73)
T 1ku3_A 29 REHTLEEVGAYFGVTRERIRQIENKA 54 (73)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 46899999999999998887765543
No 239
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=20.45 E-value=60 Score=28.82 Aligned_cols=46 Identities=9% Similarity=0.100 Sum_probs=32.2
Q ss_pred hhhhhhhccCCCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHhhhhcccccCC
Q psy14208 715 EAIIKILKMRKRISNAQLQTELVDILKNMFLPSKKMIKEQIEWLIEQKYMRRDD 768 (778)
Q Consensus 715 A~IVRiMK~~k~l~~~~L~~~v~~~l~~~F~p~~~~iK~~Ie~LIereyl~Rd~ 768 (778)
..|...+.....++..+|... +..+...+.+.|..|.++|||+|..
T Consensus 50 ~~iL~~l~~~~~~t~~ela~~--------l~~s~~tvs~~l~~Le~~glv~r~~ 95 (153)
T 2pex_A 50 YLVMLVLWETDERSVSEIGER--------LYLDSATLTPLLKRLQAAGLVTRTR 95 (153)
T ss_dssp HHHHHHHHHSCSEEHHHHHHH--------HTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHHhCCCcCHHHHHHH--------hCCCcccHHHHHHHHHHCCCEeecC
Confidence 344444444556666655433 2367889999999999999999854
No 240
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=20.41 E-value=71 Score=27.90 Aligned_cols=49 Identities=16% Similarity=0.340 Sum_probs=32.4
Q ss_pred hhhhhhhhhccCCCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHhhhhcccccCCC
Q psy14208 713 VQEAIIKILKMRKRISNAQLQTELVDILKNMFLPSKKMIKEQIEWLIEQKYMRRDDD 769 (778)
Q Consensus 713 i~A~IVRiMK~~k~l~~~~L~~~v~~~l~~~F~p~~~~iK~~Ie~LIereyl~Rd~~ 769 (778)
-+..|...+-....++..+|-..+ ..+.+.+-+.|+.|.++|||+|..+
T Consensus 38 ~~~~vL~~l~~~~~~t~~eLa~~l--------~~~~~tvs~~l~~L~~~Glv~r~~~ 86 (142)
T 3ech_A 38 PDVHVLKLIDEQRGLNLQDLGRQM--------CRDKALITRKIRELEGRNLVRRERN 86 (142)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHH--------C---CHHHHHHHHHHHTTSEEC---
T ss_pred HHHHHHHHHHhCCCcCHHHHHHHh--------CCCHHHHHHHHHHHHHCCCEeeccC
Confidence 445556666666778887765443 2466789999999999999999643
No 241
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=20.22 E-value=93 Score=27.69 Aligned_cols=46 Identities=20% Similarity=0.276 Sum_probs=37.2
Q ss_pred hhhhhhhhhccCCCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHhhhhccccc
Q psy14208 713 VQEAIIKILKMRKRISNAQLQTELVDILKNMFLPSKKMIKEQIEWLIEQKYMRR 766 (778)
Q Consensus 713 i~A~IVRiMK~~k~l~~~~L~~~v~~~l~~~F~p~~~~iK~~Ie~LIereyl~R 766 (778)
++-.|.+.+.....++..+|-..+ ..+...+.++|..|.++|+|+|
T Consensus 4 ~~~~il~~L~~~~~~~~~ela~~l--------g~s~~tv~~~l~~L~~~G~i~~ 49 (150)
T 2pn6_A 4 IDLRILKILQYNAKYSLDEIAREI--------RIPKATLSYRIKKLEKDGVIKG 49 (150)
T ss_dssp HHHHHHHHHTTCTTSCHHHHHHHH--------TSCHHHHHHHHHHHHHTTSSCC
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHH--------CcCHHHHHHHHHHHHHCCcEEE
Confidence 345677888878889988776544 2578899999999999999998
No 242
>3hhh_A Transcriptional regulator, PADR family; PF03551, structural PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.70A {Enterococcus faecalis} SCOP: a.4.5.0
Probab=20.19 E-value=1e+02 Score=26.39 Aligned_cols=57 Identities=12% Similarity=0.134 Sum_probs=47.8
Q ss_pred hhhhhhhhhhhhhhccCCCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHhhhhcccccC
Q psy14208 708 LRILRVQEAIIKILKMRKRISNAQLQTELVDILKNMFLPSKKMIKEQIEWLIEQKYMRRD 767 (778)
Q Consensus 708 ~R~~~i~A~IVRiMK~~k~l~~~~L~~~v~~~l~~~F~p~~~~iK~~Ie~LIereyl~Rd 767 (778)
-++-.++.+|..++. .+.+.--+|...+.+ .+.+.++...+=..+..|-++|+|++.
T Consensus 9 l~~g~l~~~IL~lL~-~~p~~Gyei~~~l~~--~g~~~is~gtlY~~L~rLe~~GlI~~~ 65 (116)
T 3hhh_A 9 LLKGILEGLVLAIIQ-RKETYGYEITKILND--QGFTEIVEGTVYTILLRLEKNQWVIAE 65 (116)
T ss_dssp HHTTHHHHHHHHHHH-HSCBCHHHHHHHHHT--TSCSSCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHhhhHHHHHHHHHh-cCCCCHHHHHHHHHH--cCCCCCCccHHHHHHHHHHHCCCEEEE
Confidence 345678889999887 567888899988876 455689999999999999999999885
No 243
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=20.08 E-value=57 Score=28.56 Aligned_cols=46 Identities=9% Similarity=0.172 Sum_probs=32.3
Q ss_pred hhhhhhhccCCCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHhhhhcccccCC
Q psy14208 715 EAIIKILKMRKRISNAQLQTELVDILKNMFLPSKKMIKEQIEWLIEQKYMRRDD 768 (778)
Q Consensus 715 A~IVRiMK~~k~l~~~~L~~~v~~~l~~~F~p~~~~iK~~Ie~LIereyl~Rd~ 768 (778)
..|...+...+.++..+|-..+ ..+.+.+-+.|+.|.++|||+|..
T Consensus 40 ~~iL~~l~~~~~~t~~eLa~~l--------~~~~~~vs~~l~~L~~~Glv~r~~ 85 (143)
T 3oop_A 40 WSVLEGIEANEPISQKEIALWT--------KKDTPTVNRIVDVLLRKELIVREI 85 (143)
T ss_dssp HHHHHHHHHHSSEEHHHHHHHH--------TCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHHHcCCcCHHHHHHHH--------CCCHhhHHHHHHHHHHCCCeeccC
Confidence 3344444445667766655433 357888999999999999999854
No 244
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=20.01 E-value=32 Score=28.85 Aligned_cols=51 Identities=14% Similarity=0.132 Sum_probs=38.6
Q ss_pred ecHHHHHHHHhhcCCCCCcccHHHHHHHcC----CChHHHHHHHHHhhcccccccceeeccc
Q psy14208 593 VTTFQMAVLFAWNERPLDRLSFENLLLATE----LPDPELRRTLWSLVAFPKIKRQILLYSE 650 (778)
Q Consensus 593 ~s~~Q~~ILl~FN~~~~~~~t~~ei~~~t~----i~~~~l~~~L~sL~~~~k~k~~iL~~~~ 650 (778)
+|..|..||..+-+ .+.+|..||++.++ ++...+.+.|..|... +++.+.+
T Consensus 33 LT~~e~~VL~~L~~--~~~~t~~eL~~~l~~~~~~s~sTVt~~L~rLe~K-----GlV~R~~ 87 (99)
T 2k4b_A 33 VSNAELIVMRVIWS--LGEARVDEIYAQIPQELEWSLATVKTLLGRLVKK-----EMLSTEK 87 (99)
T ss_dssp CCCSCSHHHHHHHH--HSCEEHHHHHHTCCGGGCCCHHHHHHHHHHHHHT-----TSCEEEE
T ss_pred CCHHHHHHHHHHHh--CCCCCHHHHHHHHhcccCCCHhhHHHHHHHHHHC-----CCEEEEe
Confidence 46667777776655 36799999999987 4578999999999852 2666543
Done!